Query 030904
Match_columns 169
No_of_seqs 140 out of 1544
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 09:44:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030904.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030904hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gpm_A Engineered protein OR26 100.0 7E-33 2.4E-37 184.3 15.3 142 12-163 14-160 (169)
2 2y1l_E Darpin-8.4; hydrolase-i 100.0 1.4E-28 5E-33 163.3 15.5 140 13-162 25-169 (169)
3 3twr_A Tankyrase-2; ankyrin re 100.0 2.1E-28 7.1E-33 161.8 15.6 140 15-163 21-164 (165)
4 1ihb_A P18-INK4C(INK6), cyclin 100.0 1.3E-28 4.3E-33 162.2 12.8 140 13-162 16-160 (162)
5 1d9s_A Cyclin-dependent kinase 100.0 5.1E-29 1.7E-33 160.0 10.6 125 29-162 4-134 (136)
6 1awc_B Protein (GA binding pro 100.0 3.1E-28 1.1E-32 159.2 14.2 135 13-158 13-152 (153)
7 4b93_B Ankyrin repeat domain-c 100.0 1.3E-28 4.3E-33 175.1 12.2 128 16-152 67-226 (269)
8 3v31_A Ankyrin repeat family A 100.0 9.1E-28 3.1E-32 159.0 14.5 141 12-162 13-158 (167)
9 4gpm_A Engineered protein OR26 100.0 8.3E-28 2.9E-32 159.8 14.3 116 39-162 6-126 (169)
10 3f6q_A Integrin-linked protein 100.0 3E-27 1E-31 158.2 17.1 139 14-162 17-161 (179)
11 3v30_A DNA-binding protein rfx 100.0 1.2E-27 4.1E-32 159.1 14.7 141 13-162 13-158 (172)
12 4b93_B Ankyrin repeat domain-c 100.0 6.7E-28 2.3E-32 171.3 14.1 114 14-130 131-245 (269)
13 2rfm_A Putative ankyrin repeat 100.0 4.7E-28 1.6E-32 163.8 12.6 138 15-162 48-190 (192)
14 2jab_A H10-2-G3; HER2, darpin, 100.0 9.1E-28 3.1E-32 154.1 13.1 122 33-162 10-136 (136)
15 2vge_A RELA-associated inhibit 100.0 2.2E-27 7.6E-32 165.0 15.1 136 19-162 2-146 (229)
16 1bd8_A P19INK4D CDK4/6 inhibit 100.0 2.2E-27 7.6E-32 155.4 13.6 137 14-161 14-155 (156)
17 3c5r_A BARD-1, BRCA1-associate 100.0 9.4E-28 3.2E-32 154.1 11.5 112 33-152 6-117 (137)
18 2dzn_A Probable 26S proteasome 100.0 3.6E-27 1.2E-31 163.0 14.9 140 13-160 47-195 (228)
19 3hra_A Ankyrin repeat family p 100.0 4.8E-27 1.6E-31 159.6 15.1 136 16-160 53-199 (201)
20 3jxi_A Vanilloid receptor-rela 100.0 4.3E-28 1.5E-32 171.0 10.1 152 12-164 59-250 (260)
21 2pnn_A Transient receptor pote 100.0 6.1E-28 2.1E-32 171.5 10.9 153 13-166 68-260 (273)
22 2dzn_A Probable 26S proteasome 100.0 6.8E-27 2.3E-31 161.6 15.4 141 13-161 83-227 (228)
23 1ycs_B 53BP2, P53BP2; ankyrin 99.9 1.1E-27 3.8E-32 167.4 11.2 140 12-162 15-162 (239)
24 1yyh_A HN1;, notch 1, ankyrin 99.9 7.7E-27 2.6E-31 164.2 14.0 141 13-162 68-213 (253)
25 2etb_A Transient receptor pote 99.9 1.1E-27 3.6E-32 168.7 9.5 150 13-163 57-245 (256)
26 3aaa_C Myotrophin, protein V-1 99.9 9E-27 3.1E-31 147.0 12.8 111 34-152 4-114 (123)
27 3aji_A 26S proteasome non-ATPa 99.9 1.5E-26 5E-31 160.3 15.0 138 14-161 52-194 (231)
28 1bi7_B P16INK4A, MTS1, multipl 99.9 1.5E-27 5.2E-32 156.4 9.1 122 32-162 7-134 (156)
29 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1.2E-26 4E-31 146.4 12.5 118 37-162 2-124 (126)
30 2rfa_A Transient receptor pote 99.9 1.6E-26 5.6E-31 160.3 14.3 146 15-162 50-220 (232)
31 1ikn_D Protein (I-kappa-B-alph 99.9 1.1E-26 3.8E-31 161.6 13.3 141 13-163 56-208 (236)
32 2f8y_A Notch homolog 1, transl 99.9 3.2E-26 1.1E-30 157.8 15.3 139 14-161 37-180 (223)
33 1oy3_D Transcription factor in 99.9 1.4E-26 4.8E-31 164.6 13.9 137 15-161 58-247 (282)
34 3aji_A 26S proteasome non-ATPa 99.9 3.1E-26 1E-30 158.7 14.6 139 13-161 84-227 (231)
35 2f8y_A Notch homolog 1, transl 99.9 5.8E-26 2E-30 156.5 15.8 144 12-165 68-217 (223)
36 2rfa_A Transient receptor pote 99.9 3.5E-26 1.2E-30 158.6 14.7 141 13-163 14-182 (232)
37 1oy3_D Transcription factor in 99.9 2E-26 6.8E-31 163.8 13.3 143 12-162 19-215 (282)
38 2xai_A ASB-9, ankyrin repeat a 99.9 6.7E-26 2.3E-30 160.1 15.6 138 14-163 81-221 (261)
39 4hbd_A KN motif and ankyrin re 99.9 1.5E-26 5E-31 164.9 12.3 142 13-164 122-275 (276)
40 1s70_B 130 kDa myosin-binding 99.9 4.3E-26 1.5E-30 163.6 14.8 140 13-162 51-255 (299)
41 1yyh_A HN1;, notch 1, ankyrin 99.9 3.2E-26 1.1E-30 161.0 13.1 140 13-162 101-246 (253)
42 3hra_A Ankyrin repeat family p 99.9 9.1E-26 3.1E-30 153.3 14.8 141 12-162 16-168 (201)
43 3d9h_A CDNA FLJ77766, highly s 99.9 1.1E-25 3.8E-30 161.0 15.8 138 14-163 137-277 (285)
44 1k1a_A B-cell lymphoma 3-encod 99.9 6.9E-26 2.3E-30 157.7 14.2 139 13-161 57-205 (241)
45 2rfm_A Putative ankyrin repeat 99.9 1.7E-26 5.8E-31 156.1 10.8 124 31-162 29-157 (192)
46 2xai_A ASB-9, ankyrin repeat a 99.9 8.1E-26 2.8E-30 159.7 14.7 126 15-151 16-141 (261)
47 3v31_A Ankyrin repeat family A 99.9 3.3E-26 1.1E-30 151.4 11.9 119 36-162 2-125 (167)
48 2y1l_E Darpin-8.4; hydrolase-i 99.9 1.1E-25 3.8E-30 149.3 13.8 122 33-162 10-136 (169)
49 3b7b_A Euchromatic histone-lys 99.9 1.6E-25 5.3E-30 155.7 15.1 139 14-161 56-199 (237)
50 1k1a_A B-cell lymphoma 3-encod 99.9 1.9E-25 6.5E-30 155.5 15.3 139 14-160 91-237 (241)
51 3kea_A K1L; tropism, ANK repea 99.9 4.1E-26 1.4E-30 163.3 12.2 141 9-163 7-153 (285)
52 2etb_A Transient receptor pote 99.9 2.6E-26 8.8E-31 161.6 10.7 139 16-162 20-204 (256)
53 3f6q_A Integrin-linked protein 99.9 9.5E-26 3.2E-30 150.9 12.3 121 35-162 3-128 (179)
54 3twr_A Tankyrase-2; ankyrin re 99.9 1.3E-25 4.4E-30 148.3 12.7 122 34-162 5-131 (165)
55 1wdy_A 2-5A-dependent ribonucl 99.9 4.8E-25 1.6E-29 156.5 16.3 143 13-162 116-276 (285)
56 3ljn_A Hypothetical protein; a 99.9 5.9E-26 2E-30 167.2 12.0 143 13-163 95-268 (364)
57 3b7b_A Euchromatic histone-lys 99.9 4E-25 1.4E-29 153.6 15.1 140 13-162 22-167 (237)
58 3d9h_A CDNA FLJ77766, highly s 99.9 2.6E-25 8.9E-30 159.1 14.4 137 14-161 71-212 (285)
59 1bd8_A P19INK4D CDK4/6 inhibit 99.9 2.9E-25 1E-29 145.2 13.4 122 37-166 2-128 (156)
60 3jxi_A Vanilloid receptor-rela 99.9 6.9E-26 2.4E-30 159.7 10.7 138 17-162 24-208 (260)
61 3ljn_A Hypothetical protein; a 99.9 3.1E-25 1.1E-29 163.4 14.6 139 14-162 32-234 (364)
62 1s70_B 130 kDa myosin-binding 99.9 8.5E-25 2.9E-29 156.8 15.7 140 12-161 83-286 (299)
63 1ihb_A P18-INK4C(INK6), cyclin 99.9 2.1E-25 7.1E-30 146.7 11.5 120 36-164 4-128 (162)
64 3t8k_A Uncharacterized protein 99.9 5.9E-26 2E-30 153.1 8.8 118 35-160 36-175 (186)
65 1wdy_A 2-5A-dependent ribonucl 99.9 1.2E-24 4.1E-29 154.5 16.0 149 12-162 15-171 (285)
66 3ehr_A Osteoclast-stimulating 99.9 7E-26 2.4E-30 156.4 9.3 121 35-163 71-197 (222)
67 3deo_A Signal recognition part 99.9 3.3E-25 1.1E-29 148.9 12.1 111 34-153 41-152 (183)
68 1n11_A Ankyrin; clathrin, BAND 99.9 5E-25 1.7E-29 165.7 14.3 135 16-160 226-365 (437)
69 1awc_B Protein (GA binding pro 99.9 6.5E-25 2.2E-29 143.3 12.9 117 37-162 2-123 (153)
70 3utm_A Tankyrase-1; tankyrase, 99.9 1.3E-24 4.4E-29 158.6 15.7 76 15-93 71-146 (351)
71 4hbd_A KN motif and ankyrin re 99.9 1.2E-25 3.9E-30 160.3 9.7 136 18-161 92-238 (276)
72 1bi7_B P16INK4A, MTS1, multipl 99.9 6.8E-26 2.3E-30 148.6 7.8 131 13-154 23-154 (156)
73 3v30_A DNA-binding protein rfx 99.9 3.6E-25 1.2E-29 147.1 11.1 118 38-162 3-125 (172)
74 1sw6_A Regulatory protein SWI6 99.9 1.4E-25 4.7E-30 163.4 9.6 147 14-162 109-306 (327)
75 1ikn_D Protein (I-kappa-B-alph 99.9 5.7E-26 1.9E-30 158.1 7.0 125 30-162 38-174 (236)
76 1n11_A Ankyrin; clathrin, BAND 99.9 1.2E-24 3.9E-29 163.8 14.6 139 12-160 255-398 (437)
77 3kea_A K1L; tropism, ANK repea 99.9 3.1E-25 1.1E-29 158.7 10.1 144 13-161 42-217 (285)
78 4g8k_A 2-5A-dependent ribonucl 99.9 3.2E-24 1.1E-28 156.4 15.1 146 13-165 136-300 (337)
79 3ui2_A Signal recognition part 99.9 1.2E-24 4E-29 152.5 11.1 109 35-152 43-152 (244)
80 1n0q_A 3ANK, 3 ankyrin repeats 99.9 3E-24 1E-28 129.0 11.3 92 37-129 2-93 (93)
81 3lvq_E ARF-GAP with SH3 domain 99.9 5E-24 1.7E-28 163.0 15.4 143 12-162 107-263 (497)
82 2b0o_E UPLC1; arfgap, structur 99.9 5.7E-24 1.9E-28 153.3 14.6 144 11-162 125-282 (301)
83 2pnn_A Transient receptor pote 99.9 1.7E-24 5.8E-29 153.7 11.2 134 20-161 35-215 (273)
84 3utm_A Tankyrase-1; tankyrase, 99.9 6.7E-24 2.3E-28 154.8 14.6 121 35-163 209-333 (351)
85 2vge_A RELA-associated inhibit 99.9 2.7E-25 9.3E-30 154.4 6.5 137 13-152 32-196 (229)
86 3eu9_A Huntingtin-interacting 99.9 7.5E-24 2.6E-28 147.0 13.7 138 15-162 89-233 (240)
87 1dcq_A PYK2-associated protein 99.9 1.2E-23 4E-28 150.1 14.8 122 34-163 127-262 (278)
88 2fo1_E LIN-12 protein; beta-ba 99.9 4.6E-24 1.6E-28 157.9 12.3 138 13-160 177-334 (373)
89 2fo1_E LIN-12 protein; beta-ba 99.9 9.7E-24 3.3E-28 156.2 13.6 143 18-163 149-303 (373)
90 1sw6_A Regulatory protein SWI6 99.9 1.3E-24 4.3E-29 158.4 8.7 133 12-153 141-325 (327)
91 2jab_A H10-2-G3; HER2, darpin, 99.9 2.2E-23 7.5E-28 133.6 13.2 112 13-127 25-136 (136)
92 2l6b_A NR1C; ankyrin, consensu 99.9 3.9E-24 1.3E-28 133.2 9.0 108 33-148 5-112 (115)
93 1d9s_A Cyclin-dependent kinase 99.9 4.2E-24 1.4E-28 136.9 9.2 114 12-129 22-136 (136)
94 3eu9_A Huntingtin-interacting 99.9 3.8E-23 1.3E-27 143.4 14.8 116 12-130 19-135 (240)
95 2b0o_E UPLC1; arfgap, structur 99.9 1.6E-23 5.5E-28 150.9 12.2 125 15-153 164-295 (301)
96 3jue_A Arfgap with coiled-coil 99.9 2.9E-23 9.8E-28 153.2 12.2 118 37-162 199-324 (368)
97 1ycs_B 53BP2, P53BP2; ankyrin 99.9 3.6E-24 1.2E-28 149.5 6.7 118 36-162 4-126 (239)
98 4g8k_A 2-5A-dependent ribonucl 99.9 1.3E-22 4.6E-27 147.9 15.0 148 13-162 36-191 (337)
99 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1.6E-22 5.6E-27 127.2 13.4 114 13-129 13-126 (126)
100 3lvq_E ARF-GAP with SH3 domain 99.9 1.5E-22 5.1E-27 154.9 13.8 117 13-130 143-266 (497)
101 3t8k_A Uncharacterized protein 99.9 6.4E-23 2.2E-27 138.2 9.9 114 37-160 6-141 (186)
102 1dcq_A PYK2-associated protein 99.9 4E-22 1.4E-26 142.2 13.6 114 16-130 144-264 (278)
103 3jue_A Arfgap with coiled-coil 99.9 4.3E-22 1.5E-26 146.9 13.2 135 13-152 211-345 (368)
104 1n0q_A 3ANK, 3 ankyrin repeats 99.9 3.1E-22 1.1E-26 120.1 9.1 87 70-163 1-92 (93)
105 3ehr_A Osteoclast-stimulating 99.9 5.7E-22 1.9E-26 136.7 8.6 115 14-130 85-199 (222)
106 3aaa_C Myotrophin, protein V-1 99.9 3.3E-21 1.1E-25 121.3 9.5 105 12-119 17-121 (123)
107 2zgd_A 3 repeat synthetic anky 99.8 1.7E-20 5.8E-25 115.9 11.4 91 32-123 19-109 (110)
108 3c5r_A BARD-1, BRCA1-associate 99.8 1.4E-21 4.9E-26 125.1 6.6 113 13-128 21-133 (137)
109 3deo_A Signal recognition part 99.8 7.4E-20 2.5E-24 122.7 11.7 120 14-161 56-181 (183)
110 3ui2_A Signal recognition part 99.8 6E-20 2.1E-24 128.5 11.3 96 13-112 56-152 (244)
111 2aja_A Ankyrin repeat family p 99.8 5.1E-22 1.7E-26 146.9 0.7 117 37-162 92-222 (376)
112 2l6b_A NR1C; ankyrin, consensu 99.8 4.2E-20 1.4E-24 114.8 8.1 90 66-162 4-98 (115)
113 2aja_A Ankyrin repeat family p 99.8 1.9E-21 6.6E-26 143.8 0.5 134 13-162 103-248 (376)
114 2zgd_A 3 repeat synthetic anky 99.8 2.4E-19 8.2E-24 110.7 7.6 88 64-158 17-109 (110)
115 1gp8_A Protein (scaffolding pr 53.5 12 0.00043 17.5 2.2 18 41-58 17-34 (40)
116 3zrh_A Ubiquitin thioesterase 42.9 92 0.0031 23.4 6.4 47 45-92 30-90 (454)
No 1
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=7e-33 Score=184.34 Aligned_cols=142 Identities=29% Similarity=0.449 Sum_probs=131.3
Q ss_pred CChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHH
Q 030904 12 DDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLL 91 (169)
Q Consensus 12 ~~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll 91 (169)
.+..++++.|++.|++++.. +..|.||||+|+..++.+++++|++. |++++.++..|+||||+|+..|+.+++++|+
T Consensus 14 ~G~~~~v~~Ll~~Gadvn~~--d~~g~t~l~~a~~~~~~~~~~~ll~~-gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll 90 (169)
T 4gpm_A 14 NGNKDRVKDLIENGADVNAS--DSDGRTPLHHAAENGHKEVVKLLISK-GADVNAKDSDGRTPLHHAAENGHKEVVKLLI 90 (169)
T ss_dssp TTCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHCCCCCCCc--CCCCCCHHHHHHHcCCHHHHHHHHhc-ccchhhhccCCCCHHHHHHHcCCHHHHHHHH
Confidence 45667888899999998754 56888999999999999999999998 9999999999999999999999999999999
Q ss_pred HcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhccc
Q 030904 92 ERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQE 163 (169)
Q Consensus 92 ~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~~ 163 (169)
++|++++.+|..|+||||+|++.|+.+++++|+++|+++ +.+|.+|+|||++|+ +++++|++.|.
T Consensus 91 ~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~-------~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA 160 (169)
T 4gpm_A 91 SKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADV-------NTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160 (169)
T ss_dssp HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-------TCCCTTSCCHHHHHHHTTCHHHHHHHHTC--
T ss_pred HCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-------cccCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence 999999999999999999999999999999999999998 799999999999995 99999999653
No 2
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.96 E-value=1.4e-28 Score=163.29 Aligned_cols=140 Identities=27% Similarity=0.431 Sum_probs=128.5
Q ss_pred ChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 030904 13 DSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLE 92 (169)
Q Consensus 13 ~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~ 92 (169)
...++++++++.|.+++.. +..|.||||+|+..|+.+++++|++. +++++.++..|.||||+|+..++.+++++|++
T Consensus 25 g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~ 101 (169)
T 2y1l_E 25 GRDDEVRILMANGADVNAE--DASGWTPLHLAAFNGHLEIVEVLLKN-GADVNAVDHAGMTPLRLAALFGHLEIVEVLLK 101 (169)
T ss_dssp TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 4566788899999888754 55788999999999999999999998 99999999999999999999999999999999
Q ss_pred cCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904 93 RGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ 162 (169)
Q Consensus 93 ~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~ 162 (169)
.|++++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||+++|+ +++++|++.|
T Consensus 102 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-------~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 102 NGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV-------NAQDKFGKTAFDISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-------TCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-------CCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 99999999999999999999999999999999999998 789999999999995 8899998754
No 3
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.96 E-value=2.1e-28 Score=161.75 Aligned_cols=140 Identities=23% Similarity=0.293 Sum_probs=123.4
Q ss_pred HHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcC
Q 030904 15 EEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERG 94 (169)
Q Consensus 15 ~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g 94 (169)
...++.+++.+ ..+....+..+.||||+|+..|+.+++++|++. +++++.++..|.||||+|+..++.+++++|++.|
T Consensus 21 ~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 98 (165)
T 3twr_A 21 VETVKKLCTVQ-SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH-GADVHAKDKGGLVPLHNACSYGHYEVAELLVKHG 98 (165)
T ss_dssp HHHHHHHCCTT-TTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHcC-CCCccccccCCCCHHHHHHHcChHHHHHHHHhc-CCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCC
Confidence 34555555532 233445566788999999999999999999998 9999999999999999999999999999999999
Q ss_pred CCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh----hHHHHhhhccc
Q 030904 95 ASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN----DLVSLFIMQQE 163 (169)
Q Consensus 95 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~----~~~~~li~~~~ 163 (169)
++++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||+++|. +++++|++.|.
T Consensus 99 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-------~~~~~~g~t~l~~a~~~~~~i~~~L~~~gA 164 (165)
T 3twr_A 99 AVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP-------TKKNRDGNTPLDLVKDGDTDIQDLLRGDAA 164 (165)
T ss_dssp CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-------TCCCTTSCCTGGGSCTTCHHHHHHHHTC--
T ss_pred CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-------cccCCCCCChhHhHhcCChHHHHHHhhccc
Confidence 999999999999999999999999999999999998 799999999999994 99999998764
No 4
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.96 E-value=1.3e-28 Score=162.21 Aligned_cols=140 Identities=24% Similarity=0.352 Sum_probs=128.3
Q ss_pred ChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 030904 13 DSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLE 92 (169)
Q Consensus 13 ~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~ 92 (169)
...++++.+++.|.+++.. +..+.||||+|+. |+.+++++|++. +++++.++..|.||||+|+..++.+++++|++
T Consensus 16 g~~~~v~~Ll~~~~~~~~~--~~~g~t~L~~A~~-~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 91 (162)
T 1ihb_A 16 GDLEQLTSLLQNNVNVNAQ--NGFGRTALQVMKL-GNPEIARRLLLR-GANPDLKDRTGFAVIHDAARAGFLDTLQTLLE 91 (162)
T ss_dssp TCHHHHHHHTTSCCCTTCC--CTTSCCHHHHCCS-SCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred CCHHHHHHHHhCCCCcccc--CccCccHHHHHHc-CcHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 4566788888888887644 5678899999999 999999999998 99999999999999999999999999999999
Q ss_pred cCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904 93 RGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ 162 (169)
Q Consensus 93 ~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~ 162 (169)
.|++++.++..|.||||+|+..|+.+++++|+++|.+. ++.++..|.||||+|+ +++++|++.|
T Consensus 92 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 160 (162)
T 1ihb_A 92 FQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN------VGHRNHKGDTACDLARLYGRNEVVSLMQANG 160 (162)
T ss_dssp TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCC------CCCcCCCCCcHHHHHHHcCCHHHHHHHHHhC
Confidence 99999999999999999999999999999999999985 4789999999999995 9999999876
No 5
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.96 E-value=5.1e-29 Score=159.99 Aligned_cols=125 Identities=22% Similarity=0.303 Sum_probs=117.0
Q ss_pred cccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCC-CCCh
Q 030904 29 DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDED-GAIP 107 (169)
Q Consensus 29 ~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~-~~t~ 107 (169)
++...+..+.||||+|+..|+.+++++|++. +++++.++..|+||||+|+. ++.+++++|++.|++++.++.. |.||
T Consensus 4 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~ 81 (136)
T 1d9s_A 4 GIHMLGGSSDAGLATAAARGQVETVRQLLEA-GADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRP 81 (136)
T ss_dssp CCSCCCCCCSCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCH
T ss_pred CccCCCCCCccHHHHHHHcCCHHHHHHHHHc-CCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCH
Confidence 3445567888999999999999999999998 99999999999999999999 9999999999999999999999 9999
Q ss_pred HHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904 108 LHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ 162 (169)
Q Consensus 108 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~ 162 (169)
||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+ +++++|++.|
T Consensus 82 L~~A~~~~~~~~v~~Ll~~ga~~-------~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~G 134 (136)
T 1d9s_A 82 VHDAAREGFLDTLVVLHRAGARL-------DVCDAWGRLPVDLAEEQGHRDIARYLHAAT 134 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHTCCCC-------CCCSSSSSCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCC-------CccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 99999999999999999999998 799999999999995 8999999865
No 6
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.96 E-value=3.1e-28 Score=159.15 Aligned_cols=135 Identities=25% Similarity=0.270 Sum_probs=123.3
Q ss_pred ChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 030904 13 DSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLE 92 (169)
Q Consensus 13 ~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~ 92 (169)
+...+++.+++.|.+++ .+..|.||||+|+..|+.+++++|++. +++++.++..|.||||+|+..++.+++++|++
T Consensus 13 g~~~~v~~Ll~~g~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 88 (153)
T 1awc_B 13 GQDDEVRILMANGAPFT---TDWLGTSPLHLAAQYGHFSTTEVLLRA-GVSRDARTKVDRTPLHMAASEGHANIVEVLLK 88 (153)
T ss_dssp TCHHHHHHHHHHTCCCC---CCTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHT
T ss_pred CCHHHHHHHHHcCCCCC---cCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcChHHHHHHHHH
Confidence 35567788888888765 356788999999999999999999988 99999999999999999999999999999999
Q ss_pred cCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHh
Q 030904 93 RGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLF 158 (169)
Q Consensus 93 ~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~l 158 (169)
.|++++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||+++|+ +++++|
T Consensus 89 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-------~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 89 HGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV-------HTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-------TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-------cccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 99999999999999999999999999999999999998 789999999999995 666654
No 7
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.96 E-value=1.3e-28 Score=175.07 Aligned_cols=128 Identities=23% Similarity=0.328 Sum_probs=74.6
Q ss_pred HHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHh--------------------------------CCCC
Q 030904 16 EDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDN--------------------------------LSGS 63 (169)
Q Consensus 16 ~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~--------------------------------~~~~ 63 (169)
.+++++++.|++++.. +..|.||||+|+..|+.+++++|++. .|++
T Consensus 67 ~~v~~Ll~~Gadvn~~--d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~ 144 (269)
T 4b93_B 67 KRLAKVPASGLGVNVT--SQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAK 144 (269)
T ss_dssp --------CCCCTTCC--CTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred HHHHHHHHCCCCCCCc--CCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCC
Confidence 4555666666666543 33556666666666666666665554 1445
Q ss_pred CcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCC
Q 030904 64 IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAE 143 (169)
Q Consensus 64 ~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~ 143 (169)
++.+|..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|+++ +.+|.+
T Consensus 145 ~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~-------~~~d~~ 217 (269)
T 4b93_B 145 PNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASV-------QVLNKR 217 (269)
T ss_dssp SCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCS-------CCCCTT
T ss_pred CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCC-------CCcCCC
Confidence 5555566666666666666666666666666666666666666666666666666666666666665 566666
Q ss_pred CCCcccchh
Q 030904 144 GDTDCDDQN 152 (169)
Q Consensus 144 g~tpl~~A~ 152 (169)
|+||||+|+
T Consensus 218 G~TpL~~A~ 226 (269)
T 4b93_B 218 QRTAVDCAE 226 (269)
T ss_dssp SCCSGGGSC
T ss_pred CCCHHHHHH
Confidence 666666663
No 8
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.96 E-value=9.1e-28 Score=158.96 Aligned_cols=141 Identities=21% Similarity=0.249 Sum_probs=128.3
Q ss_pred CChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHH
Q 030904 12 DDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLL 91 (169)
Q Consensus 12 ~~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll 91 (169)
.+...+++.+++.+.+++. .+..|.||||+|+..|+.+++++|++. +++++.++..|.||||+|+..++.+++++|+
T Consensus 13 ~g~~~~v~~ll~~~~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 89 (167)
T 3v31_A 13 QGEMLYLATRIEQENVINH--TDEEGFTPLMWAAAHGQIAVVEFLLQN-GADPQLLGKGRESALSLACSKGYTDIVKMLL 89 (167)
T ss_dssp TTCHHHHHHHHHHSSCTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCcCC--CCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 3456677778888877654 466888999999999999999999998 9999999999999999999999999999999
Q ss_pred HcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904 92 ERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ 162 (169)
Q Consensus 92 ~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~ 162 (169)
+.|++++.+|..|.||||+|+..|+.+++++|+++|+++ +.++..|.||+++|+ +++++|++.+
T Consensus 90 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-------~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~ 158 (167)
T 3v31_A 90 DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADP-------TIETDSGYNSMDLAVALGYRSVQQVIESHL 158 (167)
T ss_dssp HHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-------TCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-------CCcCCCCCCHHHHHHHcCcHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998 789999999999995 8889988754
No 9
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.96 E-value=8.3e-28 Score=159.81 Aligned_cols=116 Identities=32% Similarity=0.534 Sum_probs=111.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHhcChHH
Q 030904 39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIE 118 (169)
Q Consensus 39 t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~ 118 (169)
+.|+.||..|+.++++.|++. |+++|.+|..|+||||+|+..++.+++++|++.|++++.+|..|+||||+|+..|+.+
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~-Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~ 84 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIEN-GADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKE 84 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHH
Confidence 479999999999999999998 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904 119 IVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ 162 (169)
Q Consensus 119 ~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~ 162 (169)
++++|+++|+++ +.+|.+|+||||+|+ +++++|++.+
T Consensus 85 ~v~~Ll~~gadv-------n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~g 126 (169)
T 4gpm_A 85 VVKLLISKGADV-------NAKDSDGRTPLHHAAENGHKEVVKLLISKG 126 (169)
T ss_dssp HHHHHHHTTCCT-------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHCcCCC-------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 999999999998 899999999999995 9999999954
No 10
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.96 E-value=3e-27 Score=158.23 Aligned_cols=139 Identities=21% Similarity=0.240 Sum_probs=124.3
Q ss_pred hHHHHHHHHhc-CCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 030904 14 SEEDNALFEED-GVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLE 92 (169)
Q Consensus 14 ~~~~~~~l~~~-g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~ 92 (169)
...+++.+++. +.+++ ..+..|.||||+|+..|+.+++++|++. +++++.++..|.||||+|+..++.+++++|++
T Consensus 17 ~~~~v~~ll~~~~~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 93 (179)
T 3f6q_A 17 NAVAVRLWLDNTENDLN--QGDDHGFSPLHWACREGRSAVVEMLIMR-GARINVMNRGDDTPLHLAASHGHRDIVQKLLQ 93 (179)
T ss_dssp CHHHHHHHHHCTTSCTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHhcCccccc--ccCCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 34455556555 55554 4566888999999999999999999998 99999999999999999999999999999999
Q ss_pred cCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904 93 RGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ 162 (169)
Q Consensus 93 ~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~ 162 (169)
.|++++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||+++|+ +++++|++.+
T Consensus 94 ~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-------~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g 161 (179)
T 3f6q_A 94 YKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALV-------SICNKYGEMPVDKAKAPLRELLRERAEKMG 161 (179)
T ss_dssp TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-------SBCCTTSCCGGGGSCHHHHHHHHHHHHHTT
T ss_pred cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-------chhccCCCCcHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999998 799999999999994 8888888854
No 11
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=1.2e-27 Score=159.07 Aligned_cols=141 Identities=21% Similarity=0.275 Sum_probs=125.7
Q ss_pred ChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 030904 13 DSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLE 92 (169)
Q Consensus 13 ~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~ 92 (169)
.....++.+++.+... ....+..|.||||+|+..|+.+++++|++. +++++.++..|.||||+|+..++.+++++|++
T Consensus 13 g~~~~v~~ll~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 90 (172)
T 3v30_A 13 GELDQLKEHLRKGDNL-VNKPDERGFTPLIWASAFGEIETVRFLLEW-GADPHILAKERESALSLASTGGYTDIVGLLLE 90 (172)
T ss_dssp TCHHHHHHHHTTCSGG-GGCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT
T ss_pred CCHHHHHHHHHcCccc-ccCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCchhhcccCCCHHHHHHHCCCHHHHHHHHH
Confidence 3445566666666552 234466888999999999999999999998 99999999999999999999999999999999
Q ss_pred cCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904 93 RGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ 162 (169)
Q Consensus 93 ~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~ 162 (169)
+|++++.++..|.||||+|+..|+.+++++|+++|+++ +.++..|.||||+|+ +++++|++.+
T Consensus 91 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-------~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~ 158 (172)
T 3v30_A 91 RDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADL-------TTEADSGYTPMDLAVALGYRKVQQVIENHI 158 (172)
T ss_dssp TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-------TCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-------cccCCCCCCHHHHHHHhCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998 789999999999995 8899998854
No 12
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.96 E-value=6.7e-28 Score=171.30 Aligned_cols=114 Identities=19% Similarity=0.190 Sum_probs=95.3
Q ss_pred hHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHc
Q 030904 14 SEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLER 93 (169)
Q Consensus 14 ~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~ 93 (169)
...++++|++.|++++.. +..|.||||+|+..|+.+++++|++. |++++.++..|.||||+|+..|+.+++++|+++
T Consensus 131 ~~~~~~~Ll~~g~~~n~~--d~~g~TpL~~A~~~g~~~~v~~Ll~~-gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~ 207 (269)
T 4b93_B 131 HFQVVKCLLDSNAKPNKK--DLSGNTPLIYACSGGHHELVALLLQH-GASINASNNKGNTALHEAVIEKHVFVVELLLLH 207 (269)
T ss_dssp CHHHHHHHHHTTCCSCCC--CTTCCCHHHHHHHTTCGGGHHHHHHT-TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHT
T ss_pred hHHHHHHHHHCCCCCCCC--CCCCCCHHHHHHHCCCHHHHHHHHHC-CCCCCccccCCCcHHHHHHHcCCHHHHHHHHHC
Confidence 456788888888887654 56788999999999999999999998 999999999999999999999999999999999
Q ss_pred CCCCCccCCCCCChHHHHHhcCh-HHHHHHHHhcCCCc
Q 030904 94 GASLEAKDEDGAIPLHDACAGGF-IEIVQLLINSASGT 130 (169)
Q Consensus 94 g~~~~~~~~~~~t~l~~a~~~~~-~~~~~~ll~~~~~~ 130 (169)
|++++.+|..|+||||+|+++++ .++++.+.+.+...
T Consensus 208 Gad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~~~~ 245 (269)
T 4b93_B 208 GASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCVASL 245 (269)
T ss_dssp TCCSCCCCTTSCCSGGGSCTTCHHHHHTTC--------
T ss_pred CCCCCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhchhh
Confidence 99999999999999999998886 35555555554443
No 13
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.95 E-value=4.7e-28 Score=163.78 Aligned_cols=138 Identities=20% Similarity=0.248 Sum_probs=122.6
Q ss_pred HHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcC
Q 030904 15 EEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERG 94 (169)
Q Consensus 15 ~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g 94 (169)
..+++.+++.|.+++. .+..|.||||+|+..|+.+++++|++. +++++.++..|.||||+|+..++.+++++|++.|
T Consensus 48 ~~~v~~Ll~~~~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 124 (192)
T 2rfm_A 48 ENAIDKLVENFDKLED--KDIEGSTALIWAVKNNRLGIAEKLLSK-GSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHG 124 (192)
T ss_dssp GGGHHHHHHHHCCTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccc--ccccCccHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCC
Confidence 4467777887877664 355688999999999999999999998 8999999999999999999999999999999999
Q ss_pred CCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904 95 ASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ 162 (169)
Q Consensus 95 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~ 162 (169)
++++.++..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||+++|+ +++++|++.+
T Consensus 125 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-------~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 125 ANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADI-------SARDLTGLTAEASARIFGRQEVIKIFTEVR 190 (192)
T ss_dssp CCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-------TCBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-------CCcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence 999999999999999999999999999999999997 788999999999995 8899988754
No 14
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.95 E-value=9.1e-28 Score=154.12 Aligned_cols=122 Identities=29% Similarity=0.362 Sum_probs=113.7
Q ss_pred CCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHH
Q 030904 33 ETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDAC 112 (169)
Q Consensus 33 ~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~ 112 (169)
....+.||||+|+..|+.+++++|++. +++++.++..|.||||+|+..++.+++++|++.|++++..|..|.||||+|+
T Consensus 10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~ 88 (136)
T 2jab_A 10 HGSDLGKKLLEAARAGQDDEVRILMAN-GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAA 88 (136)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred ccccccHHHHHHHHhCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH
Confidence 355688999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred hcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904 113 AGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ 162 (169)
Q Consensus 113 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~ 162 (169)
..|+.+++++|+++|+++ +.+|..|.||||+|+ +++++|++.|
T Consensus 89 ~~~~~~~v~~Ll~~g~~~-------~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 89 FIGHLEIAEVLLKHGADV-------NAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHTCHHHHHHHHHTTCCT-------TCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHcCCCC-------cCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 999999999999999997 789999999999995 8999998754
No 15
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.95 E-value=2.2e-27 Score=164.98 Aligned_cols=136 Identities=21% Similarity=0.215 Sum_probs=117.7
Q ss_pred HHHHhcCCCCccc-CCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCC
Q 030904 19 ALFEEDGVNMDLE-SETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASL 97 (169)
Q Consensus 19 ~~l~~~g~~~~~~-~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~ 97 (169)
+.+++.|.+++.. .....+.||||+|+..|+.+++++|++. |++++.++..|.||||+|+..++.+++++|++.|+++
T Consensus 2 ~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~ 80 (229)
T 2vge_A 2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKE-MNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV 80 (229)
T ss_dssp --------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHH-SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred eehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence 4567777877653 3456789999999999999999999998 9999999999999999999999999999999999999
Q ss_pred CccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhccc-CCCCCcccch--h-----hHHHHhhhcc
Q 030904 98 EAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVD-AEGDTDCDDQ--N-----DLVSLFIMQQ 162 (169)
Q Consensus 98 ~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~-~~g~tpl~~A--~-----~~~~~li~~~ 162 (169)
+.+|..|.||||+|+..|+.+++++|++.|+++ +.++ ..|.||||+| + +++++|++.|
T Consensus 81 n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-------~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~g 146 (229)
T 2vge_A 81 NSPDSHGWTPLHCAASCNDTVICMALVQHGAAI-------FATTLSDGATAFEKCDPYREGYADCATYLADVE 146 (229)
T ss_dssp TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-------TCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-------ccccCCCCCCHHHHHHHHhcChHHHHHHHHHcC
Confidence 999999999999999999999999999999998 6665 6999999998 4 9999999853
No 16
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.95 E-value=2.2e-27 Score=155.38 Aligned_cols=137 Identities=21% Similarity=0.258 Sum_probs=121.1
Q ss_pred hHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHc
Q 030904 14 SEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLER 93 (169)
Q Consensus 14 ~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~ 93 (169)
....++.+++. ...+....+..|.||||+ +..|+.+++++|++. |++++.++..|.||||+|+..++.+++++|++.
T Consensus 14 ~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 90 (156)
T 1bd8_A 14 DVQEVRRLLHR-ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQ-GASPNVQDTSGTSPVHDAARTGFLDTLKVLVEH 90 (156)
T ss_dssp CHHHHHHHHHT-TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CHHHHHHHHHh-hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHc
Confidence 34455666665 433444556688999999 999999999999998 999999999999999999999999999999999
Q ss_pred CCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhc
Q 030904 94 GASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQ 161 (169)
Q Consensus 94 g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~ 161 (169)
|++++.+|..|.||||+|+..|+.+++++|++. +++ +.+|..|.||||+|+ +++++|+++
T Consensus 91 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~-------~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 91 GADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDL-------HRRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCT-------TCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred CCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCC-------CCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 999999999999999999999999999999998 776 789999999999995 889988864
No 17
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.95 E-value=9.4e-28 Score=154.14 Aligned_cols=112 Identities=29% Similarity=0.369 Sum_probs=107.4
Q ss_pred CCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHH
Q 030904 33 ETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDAC 112 (169)
Q Consensus 33 ~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~ 112 (169)
.+..|.||||+|+..|+.+++++|++. +++++.++..|.||||+|+..++.+++++|++.|++++.+|..|.||||+|+
T Consensus 6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~ 84 (137)
T 3c5r_A 6 TNHRGETLLHIASIKGDIPSVEYLLQN-GSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAA 84 (137)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHH
Confidence 466788999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred hcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh
Q 030904 113 AGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN 152 (169)
Q Consensus 113 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~ 152 (169)
..|+.+++++|+++|+++ +.+|..|.||+++|.
T Consensus 85 ~~~~~~~v~~Ll~~ga~~-------~~~~~~g~tpl~~A~ 117 (137)
T 3c5r_A 85 KNGHVDIVKLLLSYGASR-------NAVNIFGLRPVDYTD 117 (137)
T ss_dssp HTTCHHHHHHHHHTTCCT-------TCCCTTSCCGGGGCC
T ss_pred HcCCHHHHHHHHHcCCCC-------CCCCCCCCCHHHHHh
Confidence 999999999999999998 799999999999995
No 18
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.95 E-value=3.6e-27 Score=163.03 Aligned_cols=140 Identities=24% Similarity=0.336 Sum_probs=112.6
Q ss_pred ChHHHHHHHHhcCCCCcccC-CCcchhHHHHHHHHcCCHHHHHHHHHhCC--CCCcccCCCCCcHHHHHHhcCCHHHHHH
Q 030904 13 DSEEDNALFEEDGVNMDLES-ETPPHLRDLAAAAQLGDVHSLRLALDNLS--GSIDEPVEDGDTALHLTCLYGYLPCVQL 89 (169)
Q Consensus 13 ~~~~~~~~l~~~g~~~~~~~-~~~~~~t~l~~a~~~g~~~~~~~ll~~~~--~~~~~~~~~g~~~L~~a~~~~~~~~~~~ 89 (169)
...++++++++.|.+++... .+..|.||||+|+..|+.+++++|++. + ++++.++..|.||||+|+..++.+++++
T Consensus 47 ~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ 125 (228)
T 2dzn_A 47 QAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDR-PLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125 (228)
T ss_dssp TCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSS-SSCCCTTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCcccccCCcCCCCHHHHHHHcCCHhHHHH
Confidence 45567788888886666555 566778888888888888888888877 5 7777778888888888888888888888
Q ss_pred HHHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcC-CCchhhhhhhhcccCCCCCcccchh-----hHHHHhhh
Q 030904 90 LLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSA-SGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIM 160 (169)
Q Consensus 90 ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~ 160 (169)
|++.|++++.++..|.||||+|+..|+.+++++|++.| .++ +.+|..|+||||+|+ +++++|++
T Consensus 126 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------~~~d~~g~t~L~~A~~~~~~~~v~~Ll~ 195 (228)
T 2dzn_A 126 LIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAV-------NWQDKQGWTPLFHALAEGHGDAAVLLVE 195 (228)
T ss_dssp HHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCS-------CCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccc-------cCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 88888888888888888888888888888888888888 665 677888888888884 88888883
No 19
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.95 E-value=4.8e-27 Score=159.62 Aligned_cols=136 Identities=21% Similarity=0.282 Sum_probs=66.5
Q ss_pred HHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcC-
Q 030904 16 EDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERG- 94 (169)
Q Consensus 16 ~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g- 94 (169)
+++++|++.|++++.. +..+.||||+|+..|+.+++++|++..+.+++.++..|.||||+|+..++.+++++|++.|
T Consensus 53 ~~v~~Ll~~g~~~~~~--~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 130 (201)
T 3hra_A 53 EIAKALIDRGADINLQ--NSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGR 130 (201)
T ss_dssp HHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence 3444444444444332 2234445555555555555555554334444444445555555555555555555555554
Q ss_pred CCCCccCCCCCChHHHHHhcCh-----HHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhh
Q 030904 95 ASLEAKDEDGAIPLHDACAGGF-----IEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIM 160 (169)
Q Consensus 95 ~~~~~~~~~~~t~l~~a~~~~~-----~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~ 160 (169)
++++.++..|.||||+|+..++ .+++++|+++|+++ +.+|..|.||||+|+ +++++|++
T Consensus 131 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~-------~~~~~~g~t~l~~A~~~~~~~~~~~Ll~ 199 (201)
T 3hra_A 131 EDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQ-------SIKDNSGRTAMDYANQKGYTEISKILAQ 199 (201)
T ss_dssp CCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCT-------TCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred CCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCC-------CccCCCCCCHHHHHHHcCCHhHHHHHHh
Confidence 4455555555555555554443 45555555555544 444555555555552 44555444
No 20
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.95 E-value=4.3e-28 Score=170.99 Aligned_cols=152 Identities=14% Similarity=0.104 Sum_probs=130.5
Q ss_pred CChHHHHHHHHhcCCC---------CcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccC--------------
Q 030904 12 DDSEEDNALFEEDGVN---------MDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPV-------------- 68 (169)
Q Consensus 12 ~~~~~~~~~l~~~g~~---------~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~-------------- 68 (169)
....+++++|++.|.+ .+....+..|.||||+|+..|+.+++++|++. |++++.++
T Consensus 59 ~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~ 137 (260)
T 3jxi_A 59 AGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEK-GADVHAQARGRFFQPKDEGGYF 137 (260)
T ss_dssp TTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCEECCCSSSCCCCSC
T ss_pred cCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhC-CCCcCccccccccCcccccccc
Confidence 3456678888887754 33445566899999999999999999999998 99999988
Q ss_pred CCCCcHHHHHHhcCCHHHHHHHHH---cCCCCCccCCCCCChHHHHHhcCh---------HHHHHHHHhcCCCchhhhhh
Q 030904 69 EDGDTALHLTCLYGYLPCVQLLLE---RGASLEAKDEDGAIPLHDACAGGF---------IEIVQLLINSASGTECVKRM 136 (169)
Q Consensus 69 ~~g~~~L~~a~~~~~~~~~~~ll~---~g~~~~~~~~~~~t~l~~a~~~~~---------~~~~~~ll~~~~~~~~~~~~ 136 (169)
..|.||||+|+..++.+++++|++ .|++++.+|..|+||||+|+..++ .+++++|+++|++++....+
T Consensus 138 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~ 217 (260)
T 3jxi_A 138 YFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNL 217 (260)
T ss_dssp CSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCG
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccch
Confidence 689999999999999999999999 899999999999999999998777 68999999999886322233
Q ss_pred hhcccCCCCCcccchh-----hHHHHhhhcccc
Q 030904 137 LETVDAEGDTDCDDQN-----DLVSLFIMQQEV 164 (169)
Q Consensus 137 ~~~~~~~g~tpl~~A~-----~~~~~li~~~~~ 164 (169)
++.+|..|.||||+|+ +++++|++++..
T Consensus 218 ~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~ 250 (260)
T 3jxi_A 218 EALLNNDGLSPLMMAAKTGKIGIFQHIIRREIA 250 (260)
T ss_dssp GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence 3679999999999995 999999997654
No 21
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.95 E-value=6.1e-28 Score=171.46 Aligned_cols=153 Identities=14% Similarity=0.163 Sum_probs=130.0
Q ss_pred ChHHHHHHHHhcCCCC---------cccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCC--------------
Q 030904 13 DSEEDNALFEEDGVNM---------DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVE-------------- 69 (169)
Q Consensus 13 ~~~~~~~~l~~~g~~~---------~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~-------------- 69 (169)
...+++++|++.|++. .....+..|.||||+|+..|+.+++++|++. |++++.++.
T Consensus 68 g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~ 146 (273)
T 2pnn_A 68 GQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVEN-GADVQAAANGDFFKKTKGRPGFY 146 (273)
T ss_dssp TBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCBCSGGGSSCSSSCCCC
T ss_pred CChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHC-CCCcCcccccccccccccccccc
Confidence 5567888888887542 2233456899999999999999999999998 999999886
Q ss_pred CCCcHHHHHHhcCCHHHHHHHHH---cCCCCCccCCCCCChHHHHHhcCh---------HHHHHHHHhcCCCchhhhhhh
Q 030904 70 DGDTALHLTCLYGYLPCVQLLLE---RGASLEAKDEDGAIPLHDACAGGF---------IEIVQLLINSASGTECVKRML 137 (169)
Q Consensus 70 ~g~~~L~~a~~~~~~~~~~~ll~---~g~~~~~~~~~~~t~l~~a~~~~~---------~~~~~~ll~~~~~~~~~~~~~ 137 (169)
.|.||||+|+..++.+++++|++ .|++++.+|..|+||||+|+..|+ .+++++|+++|++++....++
T Consensus 147 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~ 226 (273)
T 2pnn_A 147 FGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLE 226 (273)
T ss_dssp SCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGG
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccc
Confidence 79999999999999999999999 999999999999999999999887 799999999998873222223
Q ss_pred hcccCCCCCcccchh-----hHHHHhhhcccccc
Q 030904 138 ETVDAEGDTDCDDQN-----DLVSLFIMQQEVNT 166 (169)
Q Consensus 138 ~~~~~~g~tpl~~A~-----~~~~~li~~~~~~~ 166 (169)
+.+|..|.||||+|+ +++++|++.|..+.
T Consensus 227 ~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp 260 (273)
T 2pnn_A 227 EITNRKGLTPLALAASSGKIGVLAYILQREIHEP 260 (273)
T ss_dssp GCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC--
T ss_pred cccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCc
Confidence 468999999999995 99999999876543
No 22
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.95 E-value=6.8e-27 Score=161.64 Aligned_cols=141 Identities=21% Similarity=0.214 Sum_probs=128.9
Q ss_pred ChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 030904 13 DSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLE 92 (169)
Q Consensus 13 ~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~ 92 (169)
....+++++++.|...+....+..|.||||+|+..|+.+++++|++. |++++.++..|.||||+|+..++.+++++|++
T Consensus 83 ~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 161 (228)
T 2dzn_A 83 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIEN-GASVRIKDKFNQIPLHRAASVGSLKLIELLCG 161 (228)
T ss_dssp CCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred CCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHc-CCCccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 34668889999986666666677899999999999999999999998 99999999999999999999999999999999
Q ss_pred cC-CCCCccCCCCCChHHHHHhcChHHHHHHHH-hcCCCchhhhhhhhcccCCCCCcccchh--hHHHHhhhc
Q 030904 93 RG-ASLEAKDEDGAIPLHDACAGGFIEIVQLLI-NSASGTECVKRMLETVDAEGDTDCDDQN--DLVSLFIMQ 161 (169)
Q Consensus 93 ~g-~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll-~~~~~~~~~~~~~~~~~~~g~tpl~~A~--~~~~~li~~ 161 (169)
.| ++++.+|..|.||||+|+..|+.+++++|+ ++|+++ +.+|..|.||+++|. +++++|++.
T Consensus 162 ~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~-------~~~~~~g~t~l~~A~~~~~~~~l~~~ 227 (228)
T 2dzn_A 162 LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEY-------DLVDNKGAKAEDVALNEQVKKFFLNN 227 (228)
T ss_dssp TTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCS-------CCBCTTSCBGGGGCSSTTHHHHHHTT
T ss_pred cCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCC-------CccCCCCCcHHHHHHHHHHHHHHHhc
Confidence 99 999999999999999999999999999999 899998 799999999999995 777887753
No 23
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.95 E-value=1.1e-27 Score=167.36 Aligned_cols=140 Identities=20% Similarity=0.267 Sum_probs=111.7
Q ss_pred CChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHH
Q 030904 12 DDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLL 91 (169)
Q Consensus 12 ~~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll 91 (169)
....+.++.+++.|+++++ ++.+.||||.|+..|+.+++++|++. +++++.++..|.||||+|+..|+.+++++|+
T Consensus 15 ~~~~~~~~~ll~~g~~~~~---~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll 90 (239)
T 1ycs_B 15 TNLRKTGSERIAHGMRVKF---NPLPLALLLDSSLEGEFDLVQRIIYE-VDDPSLPNDEGITALHNAVCAGHTEIVKFLV 90 (239)
T ss_dssp -------------------------CHHHHHHHHHHTCHHHHHHHTST-TSSCCCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred hhhHHHHHHHhccCCCccc---CchhhHHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 3455678888999999986 46789999999999999999999988 8899999999999999999999999999999
Q ss_pred HcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCC-Ccccch-------hhHHHHhhhcc
Q 030904 92 ERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGD-TDCDDQ-------NDLVSLFIMQQ 162 (169)
Q Consensus 92 ~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~-tpl~~A-------~~~~~~li~~~ 162 (169)
++|++++.+|..|.||||+|+..|+.+++++|+++|+++ +.++..|. ||+|+| .+++++|+..+
T Consensus 91 ~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-------~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~ 162 (239)
T 1ycs_B 91 QFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV-------FAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ 162 (239)
T ss_dssp HHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-------TCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred HcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-------ceecCCCCcchHHHHHHhhhccHHHHHHHHHhh
Confidence 999999999999999999999999999999999999998 78887777 999998 38999999843
No 24
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.95 E-value=7.7e-27 Score=164.20 Aligned_cols=141 Identities=16% Similarity=0.185 Sum_probs=106.0
Q ss_pred ChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 030904 13 DSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLE 92 (169)
Q Consensus 13 ~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~ 92 (169)
...+++++|++.|++++.. +..|.||||+|+..|+.+++++|++....+++.++..|.||||+|+..++.+++++|++
T Consensus 68 g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 145 (253)
T 1yyh_A 68 SRSDAAKRLLEASADANIQ--DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN 145 (253)
T ss_dssp TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHH
Confidence 3455677777777776543 44667778888888888888887777334777777777888888887777778888888
Q ss_pred cCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904 93 RGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ 162 (169)
Q Consensus 93 ~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~ 162 (169)
.|++++.++..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+ +++++|++.|
T Consensus 146 ~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-------~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g 213 (253)
T 1yyh_A 146 SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK-------DMQNNREETPLFLAAREGSYETAKVLLDHF 213 (253)
T ss_dssp TTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-------TCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-------CCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 88888877777888888888888888888888888776 677788888888874 7778887753
No 25
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.95 E-value=1.1e-27 Score=168.69 Aligned_cols=150 Identities=17% Similarity=0.127 Sum_probs=128.4
Q ss_pred ChHHHHHHHHhcCCCCcc---------cCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCC-------------
Q 030904 13 DSEEDNALFEEDGVNMDL---------ESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVED------------- 70 (169)
Q Consensus 13 ~~~~~~~~l~~~g~~~~~---------~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~------------- 70 (169)
...+++++|++.|++++. ...+..|.||||+|+..|+.+++++|++. |++++.++..
T Consensus 57 g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~ 135 (256)
T 2etb_A 57 GVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVEN-GADVHLRACGRFFQKHQGTCFYF 135 (256)
T ss_dssp TBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCCSGGGSCCSSSCCCS
T ss_pred chHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcccccccccccccccccC
Confidence 445678888888777652 12346789999999999999999999998 9999998876
Q ss_pred CCcHHHHHHhcCCHHHHHHHHH---cCCCCCccCCCCCChHHHHHh--cChHH-------HHHHHHhcCCCchhhhhhhh
Q 030904 71 GDTALHLTCLYGYLPCVQLLLE---RGASLEAKDEDGAIPLHDACA--GGFIE-------IVQLLINSASGTECVKRMLE 138 (169)
Q Consensus 71 g~~~L~~a~~~~~~~~~~~ll~---~g~~~~~~~~~~~t~l~~a~~--~~~~~-------~~~~ll~~~~~~~~~~~~~~ 138 (169)
|.||||+|+..++.+++++|++ .|++++.+|..|+||||+|+. .++.+ ++++|+++|++++....+.+
T Consensus 136 g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~ 215 (256)
T 2etb_A 136 GELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEE 215 (256)
T ss_dssp CSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGG
T ss_pred CCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCccccccccc
Confidence 9999999999999999999999 999999999999999999998 78888 99999999988622222226
Q ss_pred cccCCCCCcccchh-----hHHHHhhhccc
Q 030904 139 TVDAEGDTDCDDQN-----DLVSLFIMQQE 163 (169)
Q Consensus 139 ~~~~~g~tpl~~A~-----~~~~~li~~~~ 163 (169)
.+|..|.||||+|+ +++++|++++.
T Consensus 216 ~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~ 245 (256)
T 2etb_A 216 ISNHQGLTPLKLAAKEGKIEIFRHILQREF 245 (256)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHhCCHHHHHHHHhCCC
Confidence 88999999999995 99999999764
No 26
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.95 E-value=9e-27 Score=146.97 Aligned_cols=111 Identities=22% Similarity=0.360 Sum_probs=104.5
Q ss_pred CcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHh
Q 030904 34 TPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACA 113 (169)
Q Consensus 34 ~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~ 113 (169)
...+.||||+|+..|+.+++++|++. +++++.++..|+||||+|+..++.+++++|++.|++++.+|..|+||||+|+.
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~ 82 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAK-GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVY 82 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHT-TCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHc-CCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Confidence 34677999999999999999999998 89999999999999999999999999999999999999999999999999999
Q ss_pred cChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh
Q 030904 114 GGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN 152 (169)
Q Consensus 114 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~ 152 (169)
.++.+++++|+++|+++ +.+|..|.||+|+|.
T Consensus 83 ~~~~~~v~~Ll~~ga~~-------~~~~~~g~t~l~~A~ 114 (123)
T 3aaa_C 83 EGHVSCVKLLLSKGADK-------TVKGPDGLTAFEATD 114 (123)
T ss_dssp HTCHHHHHHHHHTTCCT-------TCCCTTSCCHHHHCC
T ss_pred cCCHHHHHHHHHcCCCC-------CCcCCCCCCHHHHhC
Confidence 99999999999999998 799999999999995
No 27
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.95 E-value=1.5e-26 Score=160.34 Aligned_cols=138 Identities=24% Similarity=0.288 Sum_probs=100.9
Q ss_pred hHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHc
Q 030904 14 SEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLER 93 (169)
Q Consensus 14 ~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~ 93 (169)
..++++++++.|.+++. .+..|.||||+|+..|+.+++++|++. +++++.++..|.||||+|+..++.+++++|++.
T Consensus 52 ~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 128 (231)
T 3aji_A 52 HTEIVEFLLQLGVPVND--KDDAGWSPLHIAASAGXDEIVKALLVK-GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 128 (231)
T ss_dssp CHHHHHHHHHTTCCSCC--CCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred cHHHHHHHHHhCCCCCC--cCCCCCCHHHHHHHcCHHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 34566677777766654 344566777777777777777777776 777777777777777777777777777777777
Q ss_pred CCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhc
Q 030904 94 GASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQ 161 (169)
Q Consensus 94 g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~ 161 (169)
|++++..+..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+ +++++|++.
T Consensus 129 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 194 (231)
T 3aji_A 129 GANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAST-------NIQDTEGNTPLHLACDEERVEEAKFLVTQ 194 (231)
T ss_dssp TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-------CCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCc-------cccCCCCCCHHHHHHHCCCHHHHHHHHHC
Confidence 7777777777777777777777777777777777776 667777777777774 777777774
No 28
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.95 E-value=1.5e-27 Score=156.45 Aligned_cols=122 Identities=25% Similarity=0.353 Sum_probs=106.6
Q ss_pred CCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCC-hHHH
Q 030904 32 SETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAI-PLHD 110 (169)
Q Consensus 32 ~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t-~l~~ 110 (169)
.....+.||||+|+..|+.+++++|++. +++++.++..|.||||+|+ .++.+++++|++.|++++.++..|.| |||+
T Consensus 7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~ 84 (156)
T 1bi7_B 7 SSMEPSADWLATAAARGRVEEVRALLEA-GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHD 84 (156)
T ss_dssp ---CCSTTHHHHHHHHTCHHHHHHHHTT-TCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHH
T ss_pred CCCccchHHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence 3455677899999999999999999988 8899999999999999985 88999999999999999999999998 9999
Q ss_pred HHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904 111 ACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ 162 (169)
Q Consensus 111 a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~ 162 (169)
|+..|+.+++++|+++|+++ +.+|..|.||||+|+ +++++|++.|
T Consensus 85 A~~~~~~~~v~~Ll~~ga~~-------~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~g 134 (156)
T 1bi7_B 85 AAREGFLDTLVVLHRAGARL-------DVRDAWGRLPVDLAEELGHRDVARYLRAAA 134 (156)
T ss_dssp HHHHTCHHHHHHHHHHTCCS-------SCCCTTCCCHHHHHHHHTCHHHHHHHSSCC
T ss_pred HHHCCCHHHHHHHHHcCCCC-------cccCCCCCCHHHHHHHhCHHHHHHHHHHcC
Confidence 99999999999999999987 788999999999984 8899998854
No 29
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.94 E-value=1.2e-26 Score=146.40 Aligned_cols=118 Identities=32% Similarity=0.514 Sum_probs=112.5
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHhcCh
Q 030904 37 HLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGF 116 (169)
Q Consensus 37 ~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~ 116 (169)
|.||||+|+..|+.+++++|++. +++++.++..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+..++
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 80 (126)
T 1n0r_A 2 GRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 80 (126)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CccHHHHHHHcCcHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCh
Confidence 56899999999999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904 117 IEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ 162 (169)
Q Consensus 117 ~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~ 162 (169)
.+++++|+++|+++ +.+|..|.||+++|+ +++++|++.|
T Consensus 81 ~~~~~~Ll~~g~~~-------~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 124 (126)
T 1n0r_A 81 LEVVKLLLEAGADV-------NAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124 (126)
T ss_dssp HHHHHHHHHTTCCT-------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCC-------cccCCCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence 99999999999998 789999999999995 8999999875
No 30
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.94 E-value=1.6e-26 Score=160.26 Aligned_cols=146 Identities=21% Similarity=0.221 Sum_probs=79.7
Q ss_pred HHHHHHHHhcCCCCcc---cCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCC-------------CCCcHHHHH
Q 030904 15 EEDNALFEEDGVNMDL---ESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVE-------------DGDTALHLT 78 (169)
Q Consensus 15 ~~~~~~l~~~g~~~~~---~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~-------------~g~~~L~~a 78 (169)
.+++++|++.|.++.. ...+..|.||||+|+..|+.+++++|++. +++++.++. .|.||||+|
T Consensus 50 ~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A 128 (232)
T 2rfa_A 50 LEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLAR-GASVSARATGSVFHYRPHNLIYYGEHPLSFA 128 (232)
T ss_dssp HHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCCSGGGSCCTTCSCCCCSSHHHHH
T ss_pred HHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhC-CCCCCcccCCcceeecccccccCCCCHHHHH
Confidence 4455555555554321 22233455666666666666666666655 555554433 456666666
Q ss_pred HhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHhcChHHHH----HHHHhcCCCchhhhhhhhcccCCCCCcccchh--
Q 030904 79 CLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIV----QLLINSASGTECVKRMLETVDAEGDTDCDDQN-- 152 (169)
Q Consensus 79 ~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~----~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-- 152 (169)
+..++.+++++|+++|++++.+|..|.||||+|+..++.+++ ++|+++|++.. ...+.+.+|..|.||||+|+
T Consensus 129 ~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~-~~~~~~~~~~~g~tpl~~A~~~ 207 (232)
T 2rfa_A 129 ACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDH-LKSLELVPNNQGLTPFKLAGVE 207 (232)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCS-SCCGGGCCCTTSCCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchh-hhhhhccCCCCCCCHHHHHHHc
Confidence 666666666666666666666666666666666666665555 55555555431 00111355666666666663
Q ss_pred ---hHHHHhhhcc
Q 030904 153 ---DLVSLFIMQQ 162 (169)
Q Consensus 153 ---~~~~~li~~~ 162 (169)
+++++|++++
T Consensus 208 g~~~~v~~Ll~~g 220 (232)
T 2rfa_A 208 GNIVMFQHLMQKR 220 (232)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcC
Confidence 6666666644
No 31
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.94 E-value=1.1e-26 Score=161.64 Aligned_cols=141 Identities=21% Similarity=0.259 Sum_probs=127.2
Q ss_pred ChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCC------CcccCCCCCcHHHHHHhcCCHHH
Q 030904 13 DSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGS------IDEPVEDGDTALHLTCLYGYLPC 86 (169)
Q Consensus 13 ~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~------~~~~~~~g~~~L~~a~~~~~~~~ 86 (169)
....++++|++.|++++.. +..|.||||+|+..|+.+++++|++. +.+ ++..+..|.||||+|+..++.++
T Consensus 56 ~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~ 132 (236)
T 1ikn_D 56 NQPEIAEALLGAGCDPELR--DFRGNTPLHLACEQGCLASVGVLTQS-CTTPHLHSILKATNYNGHTCLHLASIHGYLGI 132 (236)
T ss_dssp TCHHHHHCCCSCCCCSCCC--CTTCCCHHHHHHHHTCHHHHHHHHHS-TTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHcCCCCCCc--CCCCCCHHHHHHHcCCHHHHHHHHhc-ccchhHHHHhhccCCCCCCHHHHHHHcCCHHH
Confidence 4467888899999888754 55788999999999999999999987 544 56678889999999999999999
Q ss_pred HHHHHHcCCCCCccCC-CCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhh
Q 030904 87 VQLLLERGASLEAKDE-DGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIM 160 (169)
Q Consensus 87 ~~~ll~~g~~~~~~~~-~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~ 160 (169)
+++|++.|++++.++. .|.||||+|+..|+.+++++|+++|+++ +.+|..|.|||++|+ +++++|++
T Consensus 133 v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-------~~~~~~g~tpl~~A~~~~~~~~~~~Ll~ 205 (236)
T 1ikn_D 133 VELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV-------NRVTYQGYSPYQLTWGRPSTRIQQQLGQ 205 (236)
T ss_dssp HHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCS-------CCCCTTCCCGGGGCTTSSCHHHHHHHHT
T ss_pred HHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-------CcccCCCCCHHHHHHccCchHHHHHHHH
Confidence 9999999999999997 9999999999999999999999999998 799999999999995 99999999
Q ss_pred ccc
Q 030904 161 QQE 163 (169)
Q Consensus 161 ~~~ 163 (169)
.|.
T Consensus 206 ~ga 208 (236)
T 1ikn_D 206 LTL 208 (236)
T ss_dssp TSC
T ss_pred cch
Confidence 765
No 32
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.94 E-value=3.2e-26 Score=157.84 Aligned_cols=139 Identities=16% Similarity=0.193 Sum_probs=88.6
Q ss_pred hHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHc
Q 030904 14 SEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLER 93 (169)
Q Consensus 14 ~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~ 93 (169)
..++++++++.|.+++.. +..+.||||+|+..|+.+++++|++....+++.++..|.||||+|+..++.+++++|++.
T Consensus 37 ~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 114 (223)
T 2f8y_A 37 RSDAAKRLLEASADANIQ--DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS 114 (223)
T ss_dssp CHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred CHHHHHHHHHcCCCCCCc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHc
Confidence 445666666666665533 345566677777777777777666663335666666666666666666666666666666
Q ss_pred CCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhc
Q 030904 94 GASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQ 161 (169)
Q Consensus 94 g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~ 161 (169)
|++++..+..|.||||+|+..|+.+++++|+++|+++ +.++..|.||||+|+ +++++|++.
T Consensus 115 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 180 (223)
T 2f8y_A 115 HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK-------DMQNNREETPLFLAAREGSYETAKVLLDH 180 (223)
T ss_dssp TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCT-------TCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred CCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-------CCcCCCCcCHHHHHHHcCCHHHHHHHHHc
Confidence 6666666666666666666666666666666666665 556666666666663 566666653
No 33
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.94 E-value=1.4e-26 Score=164.57 Aligned_cols=137 Identities=20% Similarity=0.214 Sum_probs=92.1
Q ss_pred HHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCC-------------------------------
Q 030904 15 EEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGS------------------------------- 63 (169)
Q Consensus 15 ~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~------------------------------- 63 (169)
..++++|++.|++++.. +..|.||||+|+..|+.+++++|++. ++.
T Consensus 58 ~~~v~~Ll~~ga~~~~~--~~~g~tpL~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (282)
T 1oy3_D 58 ASTVEKLYAAGAGVLVA--ERGGHTALHLACRVRAHTCACVLLQP-RPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQP 134 (282)
T ss_dssp HHHHHHHHHTTCCSSCC--CTTSCCHHHHHTTTTCHHHHHHHSSS-CCSSCCCC--------------------------
T ss_pred HHHHHHHHHcCCCCCCC--CCCCCCHHHHHHHcCCcchhHhhhcc-CCCCchhhHHHHhhcccccCcchhcchhhhcccc
Confidence 44555666666655433 33555666666666666666666654 322
Q ss_pred ----------------CcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCC-CCCChHHHHHhcChHHHHHHHHhc
Q 030904 64 ----------------IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDE-DGAIPLHDACAGGFIEIVQLLINS 126 (169)
Q Consensus 64 ----------------~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~-~~~t~l~~a~~~~~~~~~~~ll~~ 126 (169)
++.++..|.||||+|+..++.+++++|++.|++++..+. .|.||||+|+..|+.+++++|+++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ 214 (282)
T 1oy3_D 135 NPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA 214 (282)
T ss_dssp ---------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred ccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHc
Confidence 444556667777777777777777777777777777664 377777777777777777777777
Q ss_pred CCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhc
Q 030904 127 ASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQ 161 (169)
Q Consensus 127 ~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~ 161 (169)
|+++ +.+|..|+||||+|+ +++++|++.
T Consensus 215 gad~-------~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ 247 (282)
T 1oy3_D 215 GADP-------TARMYGGRTPLGSALLRPNPILARLLRAH 247 (282)
T ss_dssp TCCT-------TCCCTTSCCHHHHHHTSSCHHHHHHHHHT
T ss_pred CCCC-------cccccCCCCHHHHHHHcCCcHHHHHHHHc
Confidence 7776 677777888888774 777777774
No 34
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.94 E-value=3.1e-26 Score=158.72 Aligned_cols=139 Identities=22% Similarity=0.199 Sum_probs=127.2
Q ss_pred ChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 030904 13 DSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLE 92 (169)
Q Consensus 13 ~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~ 92 (169)
...++++++++.|.+++.. +..|.||||+|+..|+.+++++|++. +++++.++..|.||||+|+..++.+++++|++
T Consensus 84 ~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 160 (231)
T 3aji_A 84 GXDEIVKALLVKGAHVNAV--NQNGCTPLHYAASKNRHEIAVMLLEG-GANPDAKDHYDATAMHRAAAKGNLKMVHILLF 160 (231)
T ss_dssp TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 3456888999999888754 55788999999999999999999998 99999999999999999999999999999999
Q ss_pred cCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhc
Q 030904 93 RGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQ 161 (169)
Q Consensus 93 ~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~ 161 (169)
.|++++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||+++|. +++++|++.
T Consensus 161 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-------~~~~~~g~t~l~~A~~~~~~~i~~lL~~~ 227 (231)
T 3aji_A 161 YKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASI-------YIENKEEKTPLQVAKGGLGLILKRLAEGE 227 (231)
T ss_dssp TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-------CCCCTTSCCHHHHSCHHHHHHHHHHHHHH
T ss_pred cCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCC-------CCCCCCCCCHHHHHHhhHHHHHHHHHccc
Confidence 99999999999999999999999999999999999998 799999999999994 677777664
No 35
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.94 E-value=5.8e-26 Score=156.54 Aligned_cols=144 Identities=19% Similarity=0.228 Sum_probs=130.0
Q ss_pred CChHHHHHHHHhcCC-CCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHH
Q 030904 12 DDSEEDNALFEEDGV-NMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLL 90 (169)
Q Consensus 12 ~~~~~~~~~l~~~g~-~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~l 90 (169)
....++++++++.+. +++. .+..+.||||+|+..|+.+++++|++. +++++.++..|.||||+|+..++.+++++|
T Consensus 68 ~~~~~~v~~Ll~~~~~~~~~--~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 144 (223)
T 2f8y_A 68 ADAQGVFQILIRNRATDLDA--RMHDGTTPLILAARLAVEGMLEDLINS-HADVNAVDDLGKSALHWAAAVNNVDAAVVL 144 (223)
T ss_dssp TTCHHHHHHHHHBTTSCTTC--CCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCBCTTSCBHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHcCCCCccc--CCCCCCcHHHHHHHhCcHHHHHHHHHc-CCCCcCcCCCCCcHHHHHHHcCCHHHHHHH
Confidence 345668888888776 5543 456788999999999999999999998 999999999999999999999999999999
Q ss_pred HHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhccccc
Q 030904 91 LERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQEVN 165 (169)
Q Consensus 91 l~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~~~~ 165 (169)
++.|++++.++..|.||||+|+..|+.+++++|+++|+++ +.++..|.||+++|+ +++++|++.+...
T Consensus 145 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-------~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~ 217 (223)
T 2f8y_A 145 LKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANR-------DITDHMDRLPRDIAQERMHHDIVRLLDEYNLVR 217 (223)
T ss_dssp HHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSS
T ss_pred HHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCC-------ccccccCCCHHHHHHHhcchHHHHHHHHcCCCc
Confidence 9999999999999999999999999999999999999998 789999999999995 9999999976543
No 36
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.94 E-value=3.5e-26 Score=158.64 Aligned_cols=141 Identities=23% Similarity=0.279 Sum_probs=122.4
Q ss_pred ChHHHHHHHHhc-CCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCC-----cccCCCCCcHHHHHHhcCCHHH
Q 030904 13 DSEEDNALFEED-GVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSI-----DEPVEDGDTALHLTCLYGYLPC 86 (169)
Q Consensus 13 ~~~~~~~~l~~~-g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~-----~~~~~~g~~~L~~a~~~~~~~~ 86 (169)
....+++.+++. |.+++.. +..|.||||+|+..|+.+++++|++. ++++ +.++..|.||||+|+..++.++
T Consensus 14 g~~~~v~~Ll~~~g~~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~ 90 (232)
T 2rfa_A 14 NDVQALSKLLKFEGCEVHQR--GAMGETALHIAALYDNLEAAMVLMEA-APELVFEPMTSELYEGQTALHIAVINQNVNL 90 (232)
T ss_dssp TCHHHHHHHHTTTCSCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHH-CGGGGGCCCCSTTTTTCCHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHhcCCCcccC--CCCCCCHHHHHHHcCCHHHHHHHHHc-CchhccccccccCCCCcCHHHHHHHcCCHHH
Confidence 345566666665 8887654 56888999999999999999999998 7665 5667899999999999999999
Q ss_pred HHHHHHcCCCCCccCC-------------CCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-
Q 030904 87 VQLLLERGASLEAKDE-------------DGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN- 152 (169)
Q Consensus 87 ~~~ll~~g~~~~~~~~-------------~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~- 152 (169)
+++|++.|++++..+. .|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+
T Consensus 91 v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-------~~~d~~g~t~L~~A~~ 163 (232)
T 2rfa_A 91 VRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADI-------RAQDSLGNTVLHILIL 163 (232)
T ss_dssp HHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCT-------TCCCTTSCCHHHHHHT
T ss_pred HHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCC-------CCCCCCCCCHHHHHHH
Confidence 9999999999988765 7999999999999999999999999998 799999999999995
Q ss_pred ----hHH----HHhhhccc
Q 030904 153 ----DLV----SLFIMQQE 163 (169)
Q Consensus 153 ----~~~----~~li~~~~ 163 (169)
+++ ++|++.+.
T Consensus 164 ~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 164 QPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp CSCHHHHHHHHHHHHHTTC
T ss_pred cCChHHHHHHHHHHHhcCC
Confidence 554 99998654
No 37
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.94 E-value=2e-26 Score=163.75 Aligned_cols=143 Identities=24% Similarity=0.283 Sum_probs=126.7
Q ss_pred CChHHHHHHHHhcCCCCc-ccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHH
Q 030904 12 DDSEEDNALFEEDGVNMD-LESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLL 90 (169)
Q Consensus 12 ~~~~~~~~~l~~~g~~~~-~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~l 90 (169)
.....++++|++.|.+.+ ....+..|.||||+|+..|+.+++++|++. |++++.++..|.||||+|+..++.+++++|
T Consensus 19 ~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~tpL~~A~~~~~~~~v~~L 97 (282)
T 1oy3_D 19 HQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA-GAGVLVAERGGHTALHLACRVRAHTCACVL 97 (282)
T ss_dssp TTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSSCCCTTSCCHHHHHTTTTCHHHHHHH
T ss_pred cCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCcchhHhh
Confidence 445678888998888854 345667889999999999999999999998 999999999999999999999999999999
Q ss_pred HHcCCC-----------------------------------------------CCccCCCCCChHHHHHhcChHHHHHHH
Q 030904 91 LERGAS-----------------------------------------------LEAKDEDGAIPLHDACAGGFIEIVQLL 123 (169)
Q Consensus 91 l~~g~~-----------------------------------------------~~~~~~~~~t~l~~a~~~~~~~~~~~l 123 (169)
++.|++ ++..+..|.||||+|+..|+.+++++|
T Consensus 98 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L 177 (282)
T 1oy3_D 98 LQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLL 177 (282)
T ss_dssp SSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred hccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHH
Confidence 998755 667788999999999999999999999
Q ss_pred HhcCCCchhhhhhhhcccC-CCCCcccchh-----hHHHHhhhcc
Q 030904 124 INSASGTECVKRMLETVDA-EGDTDCDDQN-----DLVSLFIMQQ 162 (169)
Q Consensus 124 l~~~~~~~~~~~~~~~~~~-~g~tpl~~A~-----~~~~~li~~~ 162 (169)
+++|+++ +.++. .|.||||+|+ +++++|++.|
T Consensus 178 l~~g~~~-------~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g 215 (282)
T 1oy3_D 178 RDAGADL-------NKPEPTCGRTPLHLAVEAQAASVLELLLKAG 215 (282)
T ss_dssp HHHTCCT-------TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHcCCCC-------CCCCCCCCcCHHHHHHHcCCHHHHHHHHHcC
Confidence 9999998 67764 4999999995 8999999953
No 38
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.94 E-value=6.7e-26 Score=160.14 Aligned_cols=138 Identities=25% Similarity=0.346 Sum_probs=92.7
Q ss_pred hHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHc
Q 030904 14 SEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLER 93 (169)
Q Consensus 14 ~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~ 93 (169)
..++++++++.|++++. ...+.||||+|+..|+.+++++|++. +++++.++..|.||||+|+..++.+++++|++.
T Consensus 81 ~~~~v~~Ll~~g~~~~~---~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 156 (261)
T 2xai_A 81 SWDCVNLLLQHGASVQP---ESDLASPIHEAARRGHVECVNSLIAY-GGNIDHKISHLGTPLYLACENQQRACVKKLLES 156 (261)
T ss_dssp CHHHHHHHHHTTCCSSC---SCTTCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCCCC---CCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence 34456666666666543 22355677777777777777777766 666776777777777777777777777777777
Q ss_pred CCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh---hHHHHhhhccc
Q 030904 94 GASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN---DLVSLFIMQQE 163 (169)
Q Consensus 94 g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~---~~~~~li~~~~ 163 (169)
|++++. +..|.||||+|+..|+.+++++|+++|+++ +.+|..|+||+|+|+ +++++|++.+.
T Consensus 157 g~~~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~-------~~~d~~g~tpl~~A~~~~~~~~~ll~~~~ 221 (261)
T 2xai_A 157 GADVNQ-GKGQDSPLHAVARTASEELACLLMDFGADT-------QAKNAEGKRPVELVPPESPLAQLFLEREG 221 (261)
T ss_dssp TCCTTC-CBTTBCHHHHHHHHTCHHHHHHHHHTTCCT-------TCCCTTSCCGGGGSCTTCTHHHHHHHC-C
T ss_pred CCCCCC-CCCCCChHHHHHHcCCHHHHHHHHHcCCCC-------CCcCCCCCChhhhccccccHHHHHHhccC
Confidence 777664 566777777777777777777777777776 677777777777774 66677666543
No 39
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.94 E-value=1.5e-26 Score=164.91 Aligned_cols=142 Identities=21% Similarity=0.288 Sum_probs=117.3
Q ss_pred ChHHHHHHHHhcCC-CCcccCCCcchhHHHHHHH-----HcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHH
Q 030904 13 DSEEDNALFEEDGV-NMDLESETPPHLRDLAAAA-----QLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPC 86 (169)
Q Consensus 13 ~~~~~~~~l~~~g~-~~~~~~~~~~~~t~l~~a~-----~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~ 86 (169)
....++++|++.|. +++. .+..|.||||+|+ ..++.++++.|++. +...+..+..|.||||+|+..|+.++
T Consensus 122 g~~~~v~~Ll~~g~~~~~~--~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~-g~~~~~~~~~g~tpLh~A~~~g~~~~ 198 (276)
T 4hbd_A 122 ANFPVVQQLLDSGVCKVDK--QNRAGYSPIMLTALATLKTQDDIETVLQLFRL-GNINAKASQAGQTALMLAVSHGRVDV 198 (276)
T ss_dssp TCHHHHHHHHHTSCCCTTC--CCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHH-SCTTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHCCCCcCCC--CCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHc-CCCccccCCCCCCHHHHHHHcCCHHH
Confidence 34556677777766 5543 3456667777777 45667777777777 66677777789999999999999999
Q ss_pred HHHHHHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHh-cCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhh
Q 030904 87 VQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLIN-SASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIM 160 (169)
Q Consensus 87 ~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~-~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~ 160 (169)
+++|++.|++++.+|..|.||||+|+..|+.+++++|++ .|+++ +.+|..|.||||+|+ +++++|++
T Consensus 199 v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~-------~~~d~~g~TpL~~A~~~g~~~iv~~Ll~ 271 (276)
T 4hbd_A 199 VKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDI-------SLTDRDGSTALMVALDAGQSEIASMLYS 271 (276)
T ss_dssp HHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCT-------TCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCC-------cCcCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 999999999999999999999999999999999999999 89887 789999999999995 89999998
Q ss_pred cccc
Q 030904 161 QQEV 164 (169)
Q Consensus 161 ~~~~ 164 (169)
+.++
T Consensus 272 ~~~i 275 (276)
T 4hbd_A 272 RMNI 275 (276)
T ss_dssp HCCC
T ss_pred ccCC
Confidence 7664
No 40
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.94 E-value=4.3e-26 Score=163.55 Aligned_cols=140 Identities=24% Similarity=0.393 Sum_probs=111.8
Q ss_pred ChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 030904 13 DSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLE 92 (169)
Q Consensus 13 ~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~ 92 (169)
+...+++.+++.|++++.. +..|.||||+|+..|+.+++++|++. |++++.++..|.||||+|+..|+.+++++|++
T Consensus 51 g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 127 (299)
T 1s70_B 51 GDTEEVLRLLERGADINYA--NVDGLTALHQACIDDNVDMVKFLVEN-GANINQPDNEGWIPLHAAASCGYLDIAEYLIS 127 (299)
T ss_dssp TCHHHHHHHHHHCCCTTCB--CTTCCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCccc--CCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 3455677777888877653 45677889999998899999988887 88888888888899999888888888888888
Q ss_pred cCCCCCccCC------------------------------------------------------------CCCChHHHHH
Q 030904 93 RGASLEAKDE------------------------------------------------------------DGAIPLHDAC 112 (169)
Q Consensus 93 ~g~~~~~~~~------------------------------------------------------------~~~t~l~~a~ 112 (169)
+|++++..+. .|.||||+|+
T Consensus 128 ~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~ 207 (299)
T 1s70_B 128 QGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAA 207 (299)
T ss_dssp TTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHH
T ss_pred CCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHH
Confidence 8887766553 3567777788
Q ss_pred hcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904 113 AGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ 162 (169)
Q Consensus 113 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~ 162 (169)
..|+.+++++|+++|+++ +.+|..|.||||+|+ +++++|++.|
T Consensus 208 ~~g~~~~v~~Ll~~g~d~-------~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g 255 (299)
T 1s70_B 208 AKGYTEVLKLLIQARYDV-------NIKDYDGWTPLHAAAHWGKEEACRILVENL 255 (299)
T ss_dssp HHTCHHHHHHHHTTTCCT-------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HCCcHHHHHHHHHcCCCC-------CCcCCCCCcHHHHHHhcCCHHHHHHHHHcC
Confidence 888888888888888887 678888888888884 8888888853
No 41
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.94 E-value=3.2e-26 Score=161.02 Aligned_cols=140 Identities=19% Similarity=0.254 Sum_probs=126.7
Q ss_pred ChHHHHHHHHhcCC-CCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHH
Q 030904 13 DSEEDNALFEEDGV-NMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLL 91 (169)
Q Consensus 13 ~~~~~~~~l~~~g~-~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll 91 (169)
....++++|++.+. +++. .+..|.||||+|+..|+.+++++|++. +++++.++..|.||||+|+..++.+++++|+
T Consensus 101 ~~~~~v~~Ll~~~~~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll 177 (253)
T 1yyh_A 101 DAQGVFQILIRNRATDLDA--RMHDGTTPLILAARLAVEGMLEDLINS-HADVNAVDDLGKSALHWAAAVNNVDAAVVLL 177 (253)
T ss_dssp TCHHHHHHHHHSTTSCTTC--CCTTCCCHHHHHHHHTCSSHHHHHHHT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCccc--cCCCCCcHHHHHHHcChHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 34567888888776 5543 456788999999999999999999998 9999999999999999999999999999999
Q ss_pred HcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904 92 ERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ 162 (169)
Q Consensus 92 ~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~ 162 (169)
+.|++++.++..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||+++|+ +++++|....
T Consensus 178 ~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-------~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~ 246 (253)
T 1yyh_A 178 KNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANR-------DITDHMDRLPRDIAQERMHHDIVRLLDLEH 246 (253)
T ss_dssp HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-------TCCCTTCCCHHHHHHHTTCHHHHHHHHC--
T ss_pred HcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCc-------cccccCCCCHHHHHHHcCCHHHHHHHHHHh
Confidence 999999999999999999999999999999999999998 799999999999995 9999988743
No 42
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.94 E-value=9.1e-26 Score=153.27 Aligned_cols=141 Identities=17% Similarity=0.219 Sum_probs=123.2
Q ss_pred CChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHH
Q 030904 12 DDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLL 91 (169)
Q Consensus 12 ~~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll 91 (169)
++.+.+..++...+.+++. .+..|.||||+|+..|+.+++++|++. |++++.++..|.||||+|+..++.+++++|+
T Consensus 16 g~~~~v~~ll~~~~~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll 92 (201)
T 3hra_A 16 RDTKKVKEILQDTTYQVDE--VDTEGNTPLNIAVHNNDIEIAKALIDR-GADINLQNSISDSPYLYAGAQGRTEILAYML 92 (201)
T ss_dssp TCHHHHHHHHTCTTCCTTC--CCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHcCCCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 4455555555554446654 455788999999999999999999998 9999999999999999999999999999999
Q ss_pred -HcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcC-CCchhhhhhhhcccCCCCCcccchh----------hHHHHhh
Q 030904 92 -ERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSA-SGTECVKRMLETVDAEGDTDCDDQN----------DLVSLFI 159 (169)
Q Consensus 92 -~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~~~~~g~tpl~~A~----------~~~~~li 159 (169)
..+++++..+..|.||||+|+..|+.+++++|++.| .++ +.++..|.||||+|+ +++++|+
T Consensus 93 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll 165 (201)
T 3hra_A 93 KHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDI-------DFQNDFGYTALIEAVGLREGNQLYQDIVKLLM 165 (201)
T ss_dssp HHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCT-------TCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHH
T ss_pred hccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc-------CCCCCCCCCHHHHHHHhccchhhHHHHHHHHH
Confidence 456799999999999999999999999999999999 776 789999999999995 7899999
Q ss_pred hcc
Q 030904 160 MQQ 162 (169)
Q Consensus 160 ~~~ 162 (169)
+.|
T Consensus 166 ~~g 168 (201)
T 3hra_A 166 ENG 168 (201)
T ss_dssp HTT
T ss_pred HCC
Confidence 854
No 43
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.94 E-value=1.1e-25 Score=161.00 Aligned_cols=138 Identities=25% Similarity=0.354 Sum_probs=108.0
Q ss_pred hHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHc
Q 030904 14 SEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLER 93 (169)
Q Consensus 14 ~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~ 93 (169)
...++++|++.|.+++.. ..+.||||+|+..|+.+++++|++. +++++.++..|.||||+|+..++.+++++|++.
T Consensus 137 ~~~~v~~Ll~~g~~~~~~---~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ 212 (285)
T 3d9h_A 137 SWDCVNLLLQHGASVQPE---SDLASPIHEAARRGHVECVNSLIAY-GGNIDHKISHLGTPLYLACENQQRACVKKLLES 212 (285)
T ss_dssp CHHHHHHHHHTTCCSSCS---CTTSCHHHHHHHHTCHHHHHHHHHT-TCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCCCCC---CCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHC
Confidence 345677777777776532 2367788888888888888888877 778888888888888888888888888888888
Q ss_pred CCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh---hHHHHhhhccc
Q 030904 94 GASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN---DLVSLFIMQQE 163 (169)
Q Consensus 94 g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~---~~~~~li~~~~ 163 (169)
|++++. +..|.||||+|+..++.+++++|+++|+++ +.+|..|.|||++|+ +++++|++..+
T Consensus 213 ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~-------~~~d~~g~t~l~~A~~~~~~~~~Ll~~~~ 277 (285)
T 3d9h_A 213 GADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADT-------QAKNAEGKRPVELVPPESPLAQLFLEREG 277 (285)
T ss_dssp TCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCT-------TCCCTTSCCGGGGSCTTSHHHHHHHHHC-
T ss_pred CCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-------CCcCCCCCCHHHHhcCccHHHHHHHHhhc
Confidence 888874 777888888888888888888888888887 788888888888884 88888888643
No 44
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.94 E-value=6.9e-26 Score=157.70 Aligned_cols=139 Identities=25% Similarity=0.286 Sum_probs=94.3
Q ss_pred ChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCC----CCcccCCCCCcHHHHHHhcCCHHHHH
Q 030904 13 DSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSG----SIDEPVEDGDTALHLTCLYGYLPCVQ 88 (169)
Q Consensus 13 ~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~----~~~~~~~~g~~~L~~a~~~~~~~~~~ 88 (169)
...+++++|++.|.+++.. +..+.||||+|+..|+.+++++|++. +. +++.++..|.||||+|+..++.++++
T Consensus 57 ~~~~~v~~Ll~~g~~~~~~--~~~g~t~l~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~ 133 (241)
T 1k1a_A 57 TLPSVVRLLVTAGASPMAL--DRHGQTAAHLACEHRSPTCLRALLDS-AAPGTLDLEARNYDGLTALHVAVNTECQETVQ 133 (241)
T ss_dssp TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHH-SCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred CCHHHHHHHHHcCCCcccc--CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccccccCcCCCcHHHHHHHcCCHHHHH
Confidence 3455666777777666543 44566777777777777777777766 43 56666666777777777777777777
Q ss_pred HHHHcCCCCCccC-CCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhc
Q 030904 89 LLLERGASLEAKD-EDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQ 161 (169)
Q Consensus 89 ~ll~~g~~~~~~~-~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~ 161 (169)
+|++.|++++..+ ..|.||||+|+..|+.+++++|+++|+++ +.++..|.||||+|+ +++++|++.
T Consensus 134 ~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 205 (241)
T 1k1a_A 134 LLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANV-------NAQMYSGSSALHSASGRGLLPLVRTLVRS 205 (241)
T ss_dssp HHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-------TCBCTTSCBHHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCC-------CCcCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 7777777776666 56777777777777777777777777665 566667777777763 666777663
No 45
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.94 E-value=1.7e-26 Score=156.14 Aligned_cols=124 Identities=20% Similarity=0.266 Sum_probs=116.6
Q ss_pred cCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHH
Q 030904 31 ESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHD 110 (169)
Q Consensus 31 ~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~ 110 (169)
+..+..|.||||+|+..|+.+++++|++. +++++.++..|.||||+|+..++.+++++|++.|++++..+..|.||||+
T Consensus 29 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 107 (192)
T 2rfm_A 29 NYRDSYNRTPLMVACMLGMENAIDKLVEN-FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMW 107 (192)
T ss_dssp TCCCTTCCCHHHHHHHHTCGGGHHHHHHH-HCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHH
T ss_pred hCcCCCCCCHHHHHHHcCCHHHHHHHHHh-ccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHH
Confidence 34566888999999999999999999998 89999999999999999999999999999999999999999999999999
Q ss_pred HHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904 111 ACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ 162 (169)
Q Consensus 111 a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~ 162 (169)
|+..|+.+++++|+++|+++ +.++..|.||||+|+ +++++|++.+
T Consensus 108 A~~~~~~~~v~~Ll~~g~~~-------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 157 (192)
T 2rfm_A 108 SIIFGYSEMSYFLLEHGANV-------NDRNLEGETPLIVASKYGRSEIVKKLLELG 157 (192)
T ss_dssp HHHHTCHHHHHHHHHTTCCS-------SCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHCCCCC-------CCCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 99999999999999999998 799999999999995 8999999853
No 46
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.94 E-value=8.1e-26 Score=159.71 Aligned_cols=126 Identities=25% Similarity=0.345 Sum_probs=66.3
Q ss_pred HHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcC
Q 030904 15 EEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERG 94 (169)
Q Consensus 15 ~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g 94 (169)
.++++.+++.|.+++.. +..|.||||+|+..|+.+++++|++. |++++.++..|.||||+|+..++.+++++|++.|
T Consensus 16 ~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 92 (261)
T 2xai_A 16 QLSLRNLISQGWAVNII--TADHVSPLHEACLGGHLSCVKILLKH-GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHG 92 (261)
T ss_dssp HHHHHHHHHTTCCSSCC--CTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCCCCCc--CCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 34455555555554432 33455556666655565555555555 5555555555555555555555555555555555
Q ss_pred CCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccch
Q 030904 95 ASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQ 151 (169)
Q Consensus 95 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A 151 (169)
++++.. ..|.||||+|+..|+.+++++|+++|+++ +.++..|.||||+|
T Consensus 93 ~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-------~~~~~~g~t~L~~A 141 (261)
T 2xai_A 93 ASVQPE-SDLASPIHEAARRGHVECVNSLIAYGGNI-------DHKISHLGTPLYLA 141 (261)
T ss_dssp CCSSCS-CTTCCHHHHHHHTTCHHHHHHHHHTTCCT-------TCCBTTTBCHHHHH
T ss_pred CCCCCC-CCCCCHHHHHHHcCcHHHHHHHHHcCCCC-------CcCCCCCCCHHHHH
Confidence 555432 23555555555555555555555555544 34444444444444
No 47
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.94 E-value=3.3e-26 Score=151.41 Aligned_cols=119 Identities=21% Similarity=0.313 Sum_probs=112.9
Q ss_pred chhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHhcC
Q 030904 36 PHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGG 115 (169)
Q Consensus 36 ~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~ 115 (169)
.+.||||.|+..|+.+++++|++. +.+++.++..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+..|
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 80 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQ-ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKG 80 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHH-SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred CCcchHHHHHHCCCHHHHHHHHHc-CCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC
Confidence 466899999999999999999999 8899999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904 116 FIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ 162 (169)
Q Consensus 116 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~ 162 (169)
+.+++++|+++|+++ +.++..|.||||+|+ +++++|++.+
T Consensus 81 ~~~~v~~Ll~~g~~~-------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 125 (167)
T 3v31_A 81 YTDIVKMLLDCGVDV-------NEYDWNGGTPLLYAVHGNHVKCVKMLLESG 125 (167)
T ss_dssp CHHHHHHHHHHTCCT-------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred CHHHHHHHHHCCCCC-------CcCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 999999999999998 789999999999995 9999999853
No 48
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.94 E-value=1.1e-25 Score=149.34 Aligned_cols=122 Identities=28% Similarity=0.424 Sum_probs=113.8
Q ss_pred CCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHH
Q 030904 33 ETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDAC 112 (169)
Q Consensus 33 ~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~ 112 (169)
....+.++|+.|+..|+.+++++|++. +++++.++..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+
T Consensus 10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 88 (169)
T 2y1l_E 10 HGSDLGKKLLEAARAGRDDEVRILMAN-GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAA 88 (169)
T ss_dssp ---CHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred CCCcccchHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH
Confidence 355678999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred hcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904 113 AGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ 162 (169)
Q Consensus 113 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~ 162 (169)
..|+.+++++|+++|+++ +.+|..|.||||+|+ +++++|++.+
T Consensus 89 ~~~~~~~~~~Ll~~g~~~-------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 136 (169)
T 2y1l_E 89 LFGHLEIVEVLLKNGADV-------NANDMEGHTPLHLAAMFGHLEIVEVLLKNG 136 (169)
T ss_dssp HTTCHHHHHHHHHTTCCT-------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHcCCCC-------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 999999999999999997 789999999999995 9999999854
No 49
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.94 E-value=1.6e-25 Score=155.71 Aligned_cols=139 Identities=23% Similarity=0.309 Sum_probs=91.4
Q ss_pred hHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHc
Q 030904 14 SEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLER 93 (169)
Q Consensus 14 ~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~ 93 (169)
..++++++++.|.+++.. +..+.||||+|+..|+.+++++|++.+..+++.++..|.||||+|+..++.+++++|++.
T Consensus 56 ~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 133 (237)
T 3b7b_A 56 HLEAVKYLIKAGALVDPK--DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK 133 (237)
T ss_dssp CHHHHHHHHTTTCCCCCC--CTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CHHHHHHHHhCCCCCCCC--CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence 344556666666655432 334556666666666666666666663356666666666777777666666677777766
Q ss_pred CCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhc
Q 030904 94 GASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQ 161 (169)
Q Consensus 94 g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~ 161 (169)
|++++.++..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+ +++++|++.
T Consensus 134 g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 199 (237)
T 3b7b_A 134 GSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL-------HAVNIHGDSPLHIAARENRYDCVVLFLSR 199 (237)
T ss_dssp TCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCT-------TCCCTTCCCHHHHHHHTTCHHHHHHHHTT
T ss_pred CCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-------CCcCCCCCCHHHHHHHhCCHhHHHHHHHc
Confidence 6666666666777777777777777777777766665 566777777777774 677777764
No 50
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.94 E-value=1.9e-25 Score=155.48 Aligned_cols=139 Identities=24% Similarity=0.289 Sum_probs=96.0
Q ss_pred hHHHHHHHHhcCCC--CcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccC-CCCCcHHHHHHhcCCHHHHHHH
Q 030904 14 SEEDNALFEEDGVN--MDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPV-EDGDTALHLTCLYGYLPCVQLL 90 (169)
Q Consensus 14 ~~~~~~~l~~~g~~--~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~-~~g~~~L~~a~~~~~~~~~~~l 90 (169)
...+++.+++.+.. .+....+..+.||||+|+..|+.+++++|++. +++++..+ ..|.||||+|+..++.+++++|
T Consensus 91 ~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 169 (241)
T 1k1a_A 91 SPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLER-GADIDAVDIKSGRSPLIHAVENNSLSMVQLL 169 (241)
T ss_dssp CHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHc-CCCcccccccCCCcHHHHHHHcCCHHHHHHH
Confidence 44566666666652 23334455666777777777777777777776 77777666 6677777777777777777777
Q ss_pred HHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhh
Q 030904 91 LERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIM 160 (169)
Q Consensus 91 l~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~ 160 (169)
++.|++++.++..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||+++|+ ++++.|.+
T Consensus 170 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-------~~~~~~g~tpl~~A~~~~~~~i~~~l~~ 237 (241)
T 1k1a_A 170 LQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADS-------SLKNCHNDTPLMVARSRRVIDILRGKAT 237 (241)
T ss_dssp HHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-------TCCCTTSCCTTTTCSSHHHHHHHTC---
T ss_pred HHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCC-------CCcCCCCCCHHHHHHhcCcHHHHhhhcc
Confidence 7777777777777777777777777777777777777776 677777777777774 55555544
No 51
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.94 E-value=4.1e-26 Score=163.27 Aligned_cols=141 Identities=16% Similarity=0.121 Sum_probs=119.7
Q ss_pred CCCCChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHH
Q 030904 9 MEEDDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ 88 (169)
Q Consensus 9 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~ 88 (169)
+...+...+.+++.+.+ + ...+..|.||||+|+..|+.+++++|++. |++++.+ +|.||||+|+..|+.++++
T Consensus 7 i~~~~~~~v~~lL~~~~--~--~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~--~g~t~L~~A~~~g~~~~v~ 79 (285)
T 3kea_A 7 INTWKSKQLKSFLSSKD--T--FKADVHGHSASYYAIADNNVRLVCTLLNA-GALKNLL--ENEFPLHQAATLEDTKIVK 79 (285)
T ss_dssp GGGCCHHHHHHHHHSTT--T--TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TGGGSCC--TTCCHHHHHTTSSSCHHHH
T ss_pred HHhcCHHHHHHHHHhCC--C--CccCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCC--CCCCHHHHHHHcCCHHHHH
Confidence 34556777888777653 3 34566888999999999999999999988 8888876 4899999999999999999
Q ss_pred HHHHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCC-CCcccchh-----hHHHHhhhcc
Q 030904 89 LLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEG-DTDCDDQN-----DLVSLFIMQQ 162 (169)
Q Consensus 89 ~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g-~tpl~~A~-----~~~~~li~~~ 162 (169)
+|++.|++++.++..|.||||+|+..|+.+++++|+++|+++ +.++..| .||||+|+ +++++|++.+
T Consensus 80 ~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-------~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g 152 (285)
T 3kea_A 80 ILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL-------MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEI 152 (285)
T ss_dssp HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGG-------GGCSSSGGGSHHHHHHHTTCHHHHHHHHTTS
T ss_pred HHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC-------CccCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999887 7888888 79999885 8888888865
Q ss_pred c
Q 030904 163 E 163 (169)
Q Consensus 163 ~ 163 (169)
.
T Consensus 153 ~ 153 (285)
T 3kea_A 153 P 153 (285)
T ss_dssp C
T ss_pred C
Confidence 4
No 52
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.94 E-value=2.6e-26 Score=161.60 Aligned_cols=139 Identities=19% Similarity=0.199 Sum_probs=121.6
Q ss_pred HHHHHHHhcCCCCccc--CCCcchhHHHHHHHHc---CCHHHHHHHHHhCCCCCcc-----------cCCCCCcHHHHHH
Q 030904 16 EDNALFEEDGVNMDLE--SETPPHLRDLAAAAQL---GDVHSLRLALDNLSGSIDE-----------PVEDGDTALHLTC 79 (169)
Q Consensus 16 ~~~~~l~~~g~~~~~~--~~~~~~~t~l~~a~~~---g~~~~~~~ll~~~~~~~~~-----------~~~~g~~~L~~a~ 79 (169)
.+++++++.|.+++.. ..+..|.||||+|+.. |+.+++++|++. +++++. ++..|.||||+|+
T Consensus 20 ~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~ 98 (256)
T 2etb_A 20 GLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQI-DKDSGNPKPLVNAQCTDEFYQGHSALHIAI 98 (256)
T ss_dssp THHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHH-HHHTTCSSCGGGCCCCSTTTTTCCHHHHHH
T ss_pred HHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhc-CCcccchhhhcccccccccccCCCHHHHHH
Confidence 4677888889888741 1466888999999999 999999999988 665542 3467999999999
Q ss_pred hcCCHHHHHHHHHcCCCCCccCCC-------------CCChHHHHHhcChHHHHHHHHh---cCCCchhhhhhhhcccCC
Q 030904 80 LYGYLPCVQLLLERGASLEAKDED-------------GAIPLHDACAGGFIEIVQLLIN---SASGTECVKRMLETVDAE 143 (169)
Q Consensus 80 ~~~~~~~~~~ll~~g~~~~~~~~~-------------~~t~l~~a~~~~~~~~~~~ll~---~~~~~~~~~~~~~~~~~~ 143 (169)
..++.+++++|++.|++++.++.. |.||||+|+..|+.+++++|++ .|+++ +.+|..
T Consensus 99 ~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~-------n~~d~~ 171 (256)
T 2etb_A 99 EKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASL-------EATDSL 171 (256)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT-------TCCCTT
T ss_pred HcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCc-------CccCCC
Confidence 999999999999999999998876 9999999999999999999999 89998 899999
Q ss_pred CCCcccchhh--------------HHHHhhhcc
Q 030904 144 GDTDCDDQND--------------LVSLFIMQQ 162 (169)
Q Consensus 144 g~tpl~~A~~--------------~~~~li~~~ 162 (169)
|+||||+|+. ++++|++.|
T Consensus 172 g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~g 204 (256)
T 2etb_A 172 GNTVLHALVMIADNSPENSALVIHMYDGLLQMG 204 (256)
T ss_dssp SCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHcccCCchhhHHHHHHHHHHHHcC
Confidence 9999999963 999999853
No 53
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.93 E-value=9.5e-26 Score=150.92 Aligned_cols=121 Identities=24% Similarity=0.415 Sum_probs=111.9
Q ss_pred cchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHhc
Q 030904 35 PPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAG 114 (169)
Q Consensus 35 ~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~ 114 (169)
+.+.++|+.|+..|+.+.+++|++..+.+++.++..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+..
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 82 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASH 82 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence 35678899999999999999999987788999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904 115 GFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ 162 (169)
Q Consensus 115 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~ 162 (169)
|+.+++++|+++|+++ +.+|..|.||||+|+ +++++|++.+
T Consensus 83 ~~~~~v~~Ll~~g~~~-------~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g 128 (179)
T 3f6q_A 83 GHRDIVQKLLQYKADI-------NAVNEHGNVPLHYACFWGQDQVAEDLVANG 128 (179)
T ss_dssp TCHHHHHHHHHTTCCT-------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred CCHHHHHHHHHcCCCC-------CccCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 9999999999999998 799999999999995 9999999854
No 54
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.93 E-value=1.3e-25 Score=148.28 Aligned_cols=122 Identities=27% Similarity=0.411 Sum_probs=114.1
Q ss_pred CcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHh
Q 030904 34 TPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACA 113 (169)
Q Consensus 34 ~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~ 113 (169)
+..+.++||.|+..|+.+.++.|++..+.+++..+..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+.
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 84 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACS 84 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHH
Confidence 55788999999999999999999997677888888999999999999999999999999999999999999999999999
Q ss_pred cChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904 114 GGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ 162 (169)
Q Consensus 114 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~ 162 (169)
.|+.+++++|+++|+++ +.+|..|.||||+|+ +++++|++.+
T Consensus 85 ~~~~~~v~~Ll~~g~~~-------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 131 (165)
T 3twr_A 85 YGHYEVAELLVKHGAVV-------NVADLWKFTPLHEAAAKGKYEICKLLLQHG 131 (165)
T ss_dssp TTCHHHHHHHHHTTCCT-------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred cCcHHHHHHHHhCCCCC-------CCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 99999999999999998 789999999999995 9999999854
No 55
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.93 E-value=4.8e-25 Score=156.51 Aligned_cols=143 Identities=22% Similarity=0.295 Sum_probs=130.1
Q ss_pred ChHHHHHHHHhcCCCCcccCC--------CcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCC-
Q 030904 13 DSEEDNALFEEDGVNMDLESE--------TPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGY- 83 (169)
Q Consensus 13 ~~~~~~~~l~~~g~~~~~~~~--------~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~- 83 (169)
....+++++++.|.+++.... +..+.||||+|+..|+.+++++|++..+++++.++..|.||||+|+..++
T Consensus 116 ~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~ 195 (285)
T 1wdy_A 116 GKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD 195 (285)
T ss_dssp TCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCT
T ss_pred CCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcccc
Confidence 456788889999998876432 45678999999999999999999988789999999999999999999998
Q ss_pred ---HHHHHHHHHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHh-cCCCchhhhhhhhcccCCCCCcccchh-----hH
Q 030904 84 ---LPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLIN-SASGTECVKRMLETVDAEGDTDCDDQN-----DL 154 (169)
Q Consensus 84 ---~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~-~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~ 154 (169)
.+++++|++.|++++.++..|.||||+|+..|+.+++++|++ .|+++ +.+|..|.||||+|+ ++
T Consensus 196 ~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-------~~~~~~g~t~l~~A~~~~~~~i 268 (285)
T 1wdy_A 196 SDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEI-------NDTDSDGKTALLLAVELKLKKI 268 (285)
T ss_dssp TTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCT-------TCCCTTSCCHHHHHHHTTCHHH
T ss_pred chHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCc-------cccCCCCCcHHHHHHHcCcHHH
Confidence 889999999999999999999999999999999999999999 88887 799999999999995 89
Q ss_pred HHHhhhcc
Q 030904 155 VSLFIMQQ 162 (169)
Q Consensus 155 ~~~li~~~ 162 (169)
+++|++.|
T Consensus 269 ~~~Ll~~G 276 (285)
T 1wdy_A 269 AELLCKRG 276 (285)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHcC
Confidence 99999954
No 56
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.93 E-value=5.9e-26 Score=167.22 Aligned_cols=143 Identities=13% Similarity=0.106 Sum_probs=126.7
Q ss_pred ChHHHHHHHHhc----CCCCcc---------------cCCCcchhHHHHHHHHcC--CHHHHHHHHHhCCCCCcccCCCC
Q 030904 13 DSEEDNALFEED----GVNMDL---------------ESETPPHLRDLAAAAQLG--DVHSLRLALDNLSGSIDEPVEDG 71 (169)
Q Consensus 13 ~~~~~~~~l~~~----g~~~~~---------------~~~~~~~~t~l~~a~~~g--~~~~~~~ll~~~~~~~~~~~~~g 71 (169)
....++++|++. |.+++. ...+..|.||||+|+..| +.+++++|++. |++++.++..|
T Consensus 95 g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~-ga~~~~~d~~g 173 (364)
T 3ljn_A 95 NKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL-GASPTAKDKAD 173 (364)
T ss_dssp TCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHH-TCCTTCCCTTS
T ss_pred CCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHc-CCCCcccCCCC
Confidence 345566677766 555442 113556889999999999 99999999999 99999999999
Q ss_pred CcHHHHHHhcCCHHHHHHHHHcCCC-----CCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCC
Q 030904 72 DTALHLTCLYGYLPCVQLLLERGAS-----LEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDT 146 (169)
Q Consensus 72 ~~~L~~a~~~~~~~~~~~ll~~g~~-----~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~t 146 (169)
.||||+|+..++.+++++|++.|++ ++..+..|.||||+|+..|+.+++++|+++|+++ +.+|..|.|
T Consensus 174 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~-------~~~d~~g~t 246 (364)
T 3ljn_A 174 ETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDV-------NMEDNEHTV 246 (364)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCT-------TCCCTTSCC
T ss_pred CCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-------CCCCCCCCC
Confidence 9999999999999999999999998 9999999999999999999999999999999998 799999999
Q ss_pred cccchh-----hHHHHhhhccc
Q 030904 147 DCDDQN-----DLVSLFIMQQE 163 (169)
Q Consensus 147 pl~~A~-----~~~~~li~~~~ 163 (169)
|||+|+ +++++|++.+.
T Consensus 247 pL~~A~~~g~~~~v~~Ll~~~~ 268 (364)
T 3ljn_A 247 PLYLSVRAAMVLLTKELLQKTD 268 (364)
T ss_dssp HHHHHHHTCCHHHHHHHHHHSC
T ss_pred HHHHHHHhChHHHHHHHHHcCC
Confidence 999995 99999999753
No 57
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.93 E-value=4e-25 Score=153.64 Aligned_cols=140 Identities=21% Similarity=0.320 Sum_probs=128.1
Q ss_pred ChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 030904 13 DSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLE 92 (169)
Q Consensus 13 ~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~ 92 (169)
+..++++.+++.|.+++.. +..|.||||+|+..|+.+++++|++. +++++.++..|.||||+|+..++.+++++|++
T Consensus 22 g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~ 98 (237)
T 3b7b_A 22 GHVDICHMLVQAGANIDTC--SEDQRTPLMEAAENNHLEAVKYLIKA-GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLS 98 (237)
T ss_dssp TCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHHTTCHHHHHHHHTT-TCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred CcHHHHHHHHHcCCCcCcc--CCCCCCHHHHHHHhCCHHHHHHHHhC-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 4456888899999888654 55788999999999999999999988 99999999999999999999999999999999
Q ss_pred cC-CCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904 93 RG-ASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ 162 (169)
Q Consensus 93 ~g-~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~ 162 (169)
.| .+++..+..|.||||+|+..++.+++++|++.|.++ +.++..|.||||+|+ +++++|++.+
T Consensus 99 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 167 (237)
T 3b7b_A 99 NGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI-------NIRDNEENICLHWAAFSGCVDIAEILLAAK 167 (237)
T ss_dssp TTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-------TCCCTTSCCHHHHHHHHCCHHHHHHHHTTT
T ss_pred CCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-------CccCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 98 899999999999999999999999999999999997 789999999999995 8999999853
No 58
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.93 E-value=2.6e-25 Score=159.07 Aligned_cols=137 Identities=23% Similarity=0.320 Sum_probs=97.0
Q ss_pred hHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHc
Q 030904 14 SEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLER 93 (169)
Q Consensus 14 ~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~ 93 (169)
...+++.|++.|.+++.. +..|.||||+|+..|+.+++++|++. +++++.++..|.||||+|+..++.+++++|++.
T Consensus 71 ~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 147 (285)
T 3d9h_A 71 HQLSLRNLISQGWAVNII--TADHVSPLHEACLGGHLSCVKILLKH-GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQH 147 (285)
T ss_dssp CHHHHHHHHHTTCCSCEE--CTTCCCHHHHHHHTTCHHHHHHHHHT-TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred CHHHHHHHHHCCCCCCCc--CCCCCCHHHHHHHCCcHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHC
Confidence 445677777777776543 44667788888888888888888877 777777777777777777777777777777777
Q ss_pred CCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhc
Q 030904 94 GASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQ 161 (169)
Q Consensus 94 g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~ 161 (169)
|++++..+ .|.||||+|+..|+.+++++|++.|+++ +.++..|.||||+|+ +++++|++.
T Consensus 148 g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-------~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ 212 (285)
T 3d9h_A 148 GASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNI-------DHKISHLGTPLYLACENQQRACVKKLLES 212 (285)
T ss_dssp TCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCT-------TCCBTTTBCHHHHHHHTTCHHHHHHHHHT
T ss_pred CCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCC-------CCcCCCCCCHHHHHHHcCcHHHHHHHHHC
Confidence 77766543 3677777777777777777777777665 566666666666663 566666653
No 59
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.93 E-value=2.9e-25 Score=145.23 Aligned_cols=122 Identities=26% Similarity=0.386 Sum_probs=113.1
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHhcCh
Q 030904 37 HLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGF 116 (169)
Q Consensus 37 ~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~ 116 (169)
+.++||.|+..|+.+.+++|++..+.+++.++..|.||||+ +..++.+++++|++.|++++.+|..|.||||+|+..|+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 80 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF 80 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence 46899999999999999999998566899999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcccccc
Q 030904 117 IEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQEVNT 166 (169)
Q Consensus 117 ~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~~~~~ 166 (169)
.+++++|++.|+++ +.+|..|.||||+|+ +++++|++..+++.
T Consensus 81 ~~~v~~Ll~~g~~~-------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~ 128 (156)
T 1bd8_A 81 LDTLKVLVEHGADV-------NVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHR 128 (156)
T ss_dssp HHHHHHHHHTTCCS-------CCCCTTSCCHHHHHHHHTCHHHHHHHHTTSCTTC
T ss_pred HHHHHHHHHcCCCC-------CCcCCCCCcHHHHHHHhChHHHHHHHHhccCCCC
Confidence 99999999999998 789999999999995 99999998755443
No 60
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.93 E-value=6.9e-26 Score=159.67 Aligned_cols=138 Identities=21% Similarity=0.234 Sum_probs=120.2
Q ss_pred HHHHHHhcCCCCcccCC--CcchhHHHHHHH---HcCCHHHHHHHHHhCCC-----------CCcccCCCCCcHHHHHHh
Q 030904 17 DNALFEEDGVNMDLESE--TPPHLRDLAAAA---QLGDVHSLRLALDNLSG-----------SIDEPVEDGDTALHLTCL 80 (169)
Q Consensus 17 ~~~~l~~~g~~~~~~~~--~~~~~t~l~~a~---~~g~~~~~~~ll~~~~~-----------~~~~~~~~g~~~L~~a~~ 80 (169)
+++++.+.|.+++.... +..|.||||+|+ ..|+.+++++|++. ++ ..+..+..|+||||+|+.
T Consensus 24 ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~ 102 (260)
T 3jxi_A 24 LLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDI-AEKTGNMREFINSPFRDVYYRGQTALHIAIE 102 (260)
T ss_dssp HHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH-HHHTTCHHHHHTCCBCCSSEESBCHHHHHHH
T ss_pred HHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh-cccccchHhhhcccccccccCCCCHHHHHHH
Confidence 56666678888876542 367899999999 67999999999987 43 344455689999999999
Q ss_pred cCCHHHHHHHHHcCCCCCccC--------------CCCCChHHHHHhcChHHHHHHHHh---cCCCchhhhhhhhcccCC
Q 030904 81 YGYLPCVQLLLERGASLEAKD--------------EDGAIPLHDACAGGFIEIVQLLIN---SASGTECVKRMLETVDAE 143 (169)
Q Consensus 81 ~~~~~~~~~ll~~g~~~~~~~--------------~~~~t~l~~a~~~~~~~~~~~ll~---~~~~~~~~~~~~~~~~~~ 143 (169)
.|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++ .|+++ +.+|..
T Consensus 103 ~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~-------~~~d~~ 175 (260)
T 3jxi_A 103 RRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADL-------RRQDSR 175 (260)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT-------TCCCTT
T ss_pred cCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCC-------cccCCC
Confidence 999999999999999999998 689999999999999999999999 89997 899999
Q ss_pred CCCcccchh--------------hHHHHhhhcc
Q 030904 144 GDTDCDDQN--------------DLVSLFIMQQ 162 (169)
Q Consensus 144 g~tpl~~A~--------------~~~~~li~~~ 162 (169)
|+||||+|+ +++++|++.|
T Consensus 176 g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~g 208 (260)
T 3jxi_A 176 GNTVLHALVAIADNTRENTKFVTKMYDLLLIKC 208 (260)
T ss_dssp SCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHhccCchhHHHHHHHHHHHHHHhC
Confidence 999999997 7999999853
No 61
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.93 E-value=3.1e-25 Score=163.39 Aligned_cols=139 Identities=22% Similarity=0.268 Sum_probs=112.0
Q ss_pred hHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcc---------------------------
Q 030904 14 SEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDE--------------------------- 66 (169)
Q Consensus 14 ~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~--------------------------- 66 (169)
...++++|++.|++++.. +..|.||||+|+..|+.+++++|++. +++++.
T Consensus 32 ~~~~v~~Ll~~g~~~~~~--d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~ 108 (364)
T 3ljn_A 32 QTDEVRRLIETGVSPTIQ--NRFGCTALHLACKFGCVDTAKYLASV-GEVHSLWHGQKPIHLAVMANKTDLVVALVEGAK 108 (364)
T ss_dssp CHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHHHCCHHHHHHHHHH-CCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCcccc--CCCCCcHHHHHHHcCCHHHHHHHHHC-CCCccccCCCCHHHHHHHcCCHHHHHHHHHhcc
Confidence 345677777777766543 44667778877777777777777776 554443
Q ss_pred -------------------------cCCCCCcHHHHHHhcC--CHHHHHHHHHcCCCCCccCCCCCChHHHHHhcChHHH
Q 030904 67 -------------------------PVEDGDTALHLTCLYG--YLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEI 119 (169)
Q Consensus 67 -------------------------~~~~g~~~L~~a~~~~--~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~ 119 (169)
++..|.||||+|+..| +.+++++|++.|++++.+|..|.||||+|+..|+.++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~ 188 (364)
T 3ljn_A 109 ERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREA 188 (364)
T ss_dssp HHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred ccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHH
Confidence 6667889999999998 8899999999999999999999999999999999999
Q ss_pred HHHHHhcCCC-----chhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904 120 VQLLINSASG-----TECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ 162 (169)
Q Consensus 120 ~~~ll~~~~~-----~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~ 162 (169)
+++|+++|++ + +.++..|.||||+|+ +++++|++.|
T Consensus 189 v~~Ll~~g~~~~~~~~-------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 234 (364)
T 3ljn_A 189 LDLMMDTVPSKSSLRL-------DYANKQGNSHLHWAILINWEDVAMRFVEMG 234 (364)
T ss_dssp HHHHHHHCSCSSSCCT-------TCCCTTCCCTTHHHHTTTCHHHHHHHHTTT
T ss_pred HHHHHhcccccccccc-------cccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence 9999998887 6 788899999999995 8999999853
No 62
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.93 E-value=8.5e-25 Score=156.81 Aligned_cols=140 Identities=25% Similarity=0.352 Sum_probs=121.9
Q ss_pred CChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccC-----------------------
Q 030904 12 DDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPV----------------------- 68 (169)
Q Consensus 12 ~~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~----------------------- 68 (169)
.....++++|++.|++++.. +..|.||||+|+..|+.+++++|++. |++++.++
T Consensus 83 ~g~~~~v~~Ll~~ga~~~~~--~~~g~tpL~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll 159 (299)
T 1s70_B 83 DDNVDMVKFLVENGANINQP--DNEGWIPLHAAASCGYLDIAEYLISQ-GAHVGAVNSEGDTPLDIAEEEAMEELLQNEV 159 (299)
T ss_dssp TTCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHCCSHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHCCCCCCCC--CCCCCcHHHHHHHcCCHHHHHHHHhC-CCCCCCcCCCCCCHHHHHHhcchHHHHHHHH
Confidence 34567899999999988754 55788999999999999999999998 87776544
Q ss_pred -------------------------------------CCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHH
Q 030904 69 -------------------------------------EDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDA 111 (169)
Q Consensus 69 -------------------------------------~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a 111 (169)
..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A 239 (299)
T 1s70_B 160 NRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAA 239 (299)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHH
T ss_pred hhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence 3477889999999999999999999999999999999999999
Q ss_pred HhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh----hHHHHhhhc
Q 030904 112 CAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN----DLVSLFIMQ 161 (169)
Q Consensus 112 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~----~~~~~li~~ 161 (169)
+..|+.+++++|+++|+++ +.+|..|.||+++|. +++..++.+
T Consensus 240 ~~~~~~~~v~~Ll~~gad~-------~~~d~~g~t~l~~A~~~~~~~l~~l~~~ 286 (299)
T 1s70_B 240 AHWGKEEACRILVENLCDM-------EAVNKVGQTAFDVADEDILGYLEELQKK 286 (299)
T ss_dssp HHTTCHHHHHHHHHTTCCT-------TCCCTTSCCTTTSCCSGGGHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHcCCCC-------CCcCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998 799999999999995 455554443
No 63
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.93 E-value=2.1e-25 Score=146.73 Aligned_cols=120 Identities=29% Similarity=0.405 Sum_probs=112.4
Q ss_pred chhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHhcC
Q 030904 36 PHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGG 115 (169)
Q Consensus 36 ~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~ 115 (169)
...+|||.|+..|+.+++++|++. +++++.++..|.||||+|+. ++.+++++|++.|++++.++..|.||||+|+..|
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 81 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQN-NVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAG 81 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTS-CCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhC-CCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence 345899999999999999999987 99999999999999999999 9999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcccc
Q 030904 116 FIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQEV 164 (169)
Q Consensus 116 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~~~ 164 (169)
+.+++++|+++|+++ +.++..|.||||+|+ +++++|++.+..
T Consensus 82 ~~~~v~~Ll~~g~~~-------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 128 (162)
T 1ihb_A 82 FLDTLQTLLEFQADV-------NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128 (162)
T ss_dssp CHHHHHHHHHTTCCT-------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHcCCCC-------CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCC
Confidence 999999999999997 799999999999995 999999997653
No 64
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.93 E-value=5.9e-26 Score=153.08 Aligned_cols=118 Identities=14% Similarity=0.068 Sum_probs=106.2
Q ss_pred cchhHHHHHHHHcCCH----HHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCC------HHHHHHHHHcCCCCCccCCCC
Q 030904 35 PPHLRDLAAAAQLGDV----HSLRLALDNLSGSIDEPVEDGDTALHLTCLYGY------LPCVQLLLERGASLEAKDEDG 104 (169)
Q Consensus 35 ~~~~t~l~~a~~~g~~----~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~------~~~~~~ll~~g~~~~~~~~~~ 104 (169)
..|.||||+|+..|+. +++++|++. |++++.++..|+||||+|+..++ .+++++|++.|++++.+|..|
T Consensus 36 ~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~-Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g 114 (186)
T 3t8k_A 36 VLKSNILYDVLRNNNDEARYKISMFLINK-GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPY 114 (186)
T ss_dssp HHTTTHHHHHTTCSCHHHHHHHHHHHHHT-TCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGG
T ss_pred cCCCCHHHHHHHcCCcchHHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCc
Confidence 5689999999999975 589999998 99999999999999999999886 478999999999999999999
Q ss_pred C-ChHHHHHhcC-----hHHHHHHHHh-cCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhh
Q 030904 105 A-IPLHDACAGG-----FIEIVQLLIN-SASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIM 160 (169)
Q Consensus 105 ~-t~l~~a~~~~-----~~~~~~~ll~-~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~ 160 (169)
. ||||+|+..+ +.+++++|++ +|+++ +.+|..|.||||+|+ +++++|..
T Consensus 115 ~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~-------~~~d~~G~TpL~~A~~~~~~~~v~~L~~ 175 (186)
T 3t8k_A 115 KIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQL-------LIKDKWGLTALEFVKRCQKPIALKMMED 175 (186)
T ss_dssp TBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCT-------TCCCTTSCCHHHHHHTTTCHHHHHHHHH
T ss_pred CchHHHHHHHcCCChhhHHHHHHHHHHhcCCCC-------cccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 9 9999999844 4679999999 99998 899999999999995 67777765
No 65
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.93 E-value=1.2e-24 Score=154.48 Aligned_cols=149 Identities=17% Similarity=0.261 Sum_probs=127.7
Q ss_pred CChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHH
Q 030904 12 DDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLL 91 (169)
Q Consensus 12 ~~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll 91 (169)
.+..++++.+++.|.+++.. .+..|.||||+|+..|+.+++++|++. |++++.++..|.||||+|+..++.+++++|+
T Consensus 15 ~g~~~~v~~Ll~~g~~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 92 (285)
T 1wdy_A 15 NEDVDLVQQLLEGGANVNFQ-EEEGGWTPLHNAVQMSREDIVELLLRH-GADPVLRKKNGATPFLLAAIAGSVKLLKLFL 92 (285)
T ss_dssp TTCHHHHHHHHHTTCCTTCC-CTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred cCCHHHHHHHHHcCCCcccc-cCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 34566888888989888753 245678999999999999999999998 9999999999999999999999999999999
Q ss_pred HcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhh---hhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904 92 ERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVK---RMLETVDAEGDTDCDDQN-----DLVSLFIMQQ 162 (169)
Q Consensus 92 ~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~---~~~~~~~~~g~tpl~~A~-----~~~~~li~~~ 162 (169)
++|++++..+..|.||||+|+..|+.+++++|++.|.+++... ......+..|.||||.|+ +++++|++..
T Consensus 93 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~ 171 (285)
T 1wdy_A 93 SKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEM 171 (285)
T ss_dssp HTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTS
T ss_pred HcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999873100 001112788999999995 8999999863
No 66
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.93 E-value=7e-26 Score=156.39 Aligned_cols=121 Identities=26% Similarity=0.319 Sum_probs=108.2
Q ss_pred cchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHc-CCCCCccCCCCCChHHHHHh
Q 030904 35 PPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLER-GASLEAKDEDGAIPLHDACA 113 (169)
Q Consensus 35 ~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~-g~~~~~~~~~~~t~l~~a~~ 113 (169)
..+.||||+|+..|+.+++++|++. +++++.++..|+||||+|+..++.+++++|++. |++++.+|..|.||||+|+.
T Consensus 71 ~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~ 149 (222)
T 3ehr_A 71 ESIDNPLHEAAKRGNLSWLRECLDN-RVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAW 149 (222)
T ss_dssp EEESCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHH
T ss_pred cccccccccccccCcHHHHHHHHhC-CCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHH
Confidence 3567999999999999999999998 999999999999999999999999999999999 99999999999999999999
Q ss_pred cChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhccc
Q 030904 114 GGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQE 163 (169)
Q Consensus 114 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~~ 163 (169)
.|+.+++++|+++|+++ +.+|..|.|||++|+ ++++.|+..+.
T Consensus 150 ~~~~~~v~~Ll~~ga~~-------~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~ 197 (222)
T 3ehr_A 150 KGYADIVQLLLAKGART-------DLRNIEKKLAFDMATNAACASLLKKKQGTDA 197 (222)
T ss_dssp HTCHHHHHHHHHHTCCS-------CCCCTTSCCHHHHCCSHHHHHHHC-------
T ss_pred cCCHHHHHHHHHcCCCC-------ccccCCCCCHHHHhcchhHHHHHHHHhccch
Confidence 99999999999999998 799999999999994 77777766543
No 67
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.93 E-value=3.3e-25 Score=148.91 Aligned_cols=111 Identities=29% Similarity=0.330 Sum_probs=105.0
Q ss_pred CcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccC-CCCCChHHHHH
Q 030904 34 TPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKD-EDGAIPLHDAC 112 (169)
Q Consensus 34 ~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~-~~~~t~l~~a~ 112 (169)
+..|.||||+|+..|+.++++.|++ +++++.++..|+||||+|+..++.+++++|+++|++++.++ ..|.||||+|+
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~ 118 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA 118 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT--TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh--cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence 3478899999999999999999998 78999999999999999999999999999999999999888 89999999999
Q ss_pred hcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchhh
Q 030904 113 AGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQND 153 (169)
Q Consensus 113 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~~ 153 (169)
..|+.+++++|+++|+++ +.+|..|+||||+|++
T Consensus 119 ~~~~~~~v~~Ll~~ga~~-------~~~d~~g~tpl~~A~~ 152 (183)
T 3deo_A 119 GYVRPEVVEALVELGADI-------EVEDERGLTALELARE 152 (183)
T ss_dssp HTTCHHHHHHHHHHTCCT-------TCCCTTSCCHHHHHHH
T ss_pred hcCcHHHHHHHHHcCCCC-------cCCCCCCCCHHHHHHH
Confidence 999999999999999998 7999999999999953
No 68
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.93 E-value=5e-25 Score=165.74 Aligned_cols=135 Identities=24% Similarity=0.330 Sum_probs=70.1
Q ss_pred HHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCC
Q 030904 16 EDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGA 95 (169)
Q Consensus 16 ~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~ 95 (169)
.+++.|++.|.+++.. +..|.||||+|+..|+.+++++|++. +++++..+..|.||||+|+..++.+++++|+++|+
T Consensus 226 ~~~~~Ll~~g~~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ 302 (437)
T 1n11_A 226 EVARSLLQYGGSANAE--SVQGVTPLHLAAQEGHAEMVALLLSK-QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGV 302 (437)
T ss_dssp HHHHHHHHTTCCTTCC--CTTCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCCCCC--CCCCCCHHHHHHHCCCHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCc
Confidence 3444444544444322 23444555555555555555555554 55555555555555555555555555555555555
Q ss_pred CCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhh
Q 030904 96 SLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIM 160 (169)
Q Consensus 96 ~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~ 160 (169)
+++.++..|.||||+|+..|+.+++++|+++|+++ +.++..|.||||+|+ +++++|++
T Consensus 303 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~-------n~~~~~g~t~L~~A~~~g~~~iv~~Ll~ 365 (437)
T 1n11_A 303 MVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADV-------NAKTKLGYSPLHQAAQQGHTDIVTLLLK 365 (437)
T ss_dssp CTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCT-------TCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred cCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCC-------CCCCCCCCCHHHHHHHCChHHHHHHHHH
Confidence 55555555555555555555555555555555554 455555555555553 55555555
No 69
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.93 E-value=6.5e-25 Score=143.33 Aligned_cols=117 Identities=26% Similarity=0.361 Sum_probs=109.4
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHhcCh
Q 030904 37 HLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGF 116 (169)
Q Consensus 37 ~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~ 116 (169)
..++|+.|+..|+.+++++|++. +.+++ .+..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+..|+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~-g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 79 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMAN-GAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGH 79 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHH-TCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred ccHHHHHHHHcCCHHHHHHHHHc-CCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCh
Confidence 34899999999999999999998 77766 57889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904 117 IEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ 162 (169)
Q Consensus 117 ~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~ 162 (169)
.+++++|+++|+++ +.+|..|.||||+|+ +++++|++.+
T Consensus 80 ~~~v~~Ll~~g~~~-------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 123 (153)
T 1awc_B 80 ANIVEVLLKHGADV-------NAKDMLKMTALHWATEHNHQEVVELLIKYG 123 (153)
T ss_dssp HHHHHHHHTTTCCT-------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCC-------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 99999999999998 789999999999995 9999999864
No 70
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.93 E-value=1.3e-24 Score=158.59 Aligned_cols=76 Identities=18% Similarity=0.144 Sum_probs=37.8
Q ss_pred HHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHc
Q 030904 15 EEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLER 93 (169)
Q Consensus 15 ~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~ 93 (169)
..++++|++.|++++.. +..|.||||+|+..|+.+++++|++. +++++.++..|.||||+|+..++.+++++|+++
T Consensus 71 ~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~g~~~iv~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 146 (351)
T 3utm_A 71 VRIVQLLLQHGADVHAK--DKGGLVPLHNACSYGHYEVTELLLKH-GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSH 146 (351)
T ss_dssp HHHHHHHHHTTCCTTCC--CTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCCcc--CCCCCcHHHHHHHCCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 34455555555544332 23444555555555555555555554 555555555555555555554444444444433
No 71
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.93 E-value=1.2e-25 Score=160.29 Aligned_cols=136 Identities=15% Similarity=0.175 Sum_probs=120.1
Q ss_pred HHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCC-CCcccCCCCCcHHHHHH-----hcCCHHHHHHHH
Q 030904 18 NALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSG-SIDEPVEDGDTALHLTC-----LYGYLPCVQLLL 91 (169)
Q Consensus 18 ~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~-~~~~~~~~g~~~L~~a~-----~~~~~~~~~~ll 91 (169)
++.+.+.+.+..++..+..|.||||+|+..|+.+++++|++. |+ +++..+..|.||||+|+ ..++.+++++|+
T Consensus 92 ~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll 170 (276)
T 4hbd_A 92 FRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDS-GVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLF 170 (276)
T ss_dssp HHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-SCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHC-CCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHH
Confidence 333444444433455677899999999999999999999999 65 99999999999999999 557889999999
Q ss_pred HcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhc
Q 030904 92 ERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQ 161 (169)
Q Consensus 92 ~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~ 161 (169)
+.|...+..+..|.||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+ +++++|++.
T Consensus 171 ~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~-------n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~ 238 (276)
T 4hbd_A 171 RLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADV-------NVQDDDGSTALMCACEHGHKEIAGLLLAV 238 (276)
T ss_dssp HHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-------TCCCTTSCCHHHHHHHHTCHHHHHHHHTS
T ss_pred HcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-------CCCCCCCCCHHHHHHHCCCHHHHHHHHhc
Confidence 999999999999999999999999999999999999998 899999999999995 999999983
No 72
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.93 E-value=6.8e-26 Score=148.56 Aligned_cols=131 Identities=20% Similarity=0.240 Sum_probs=102.4
Q ss_pred ChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCc-HHHHHHhcCCHHHHHHHH
Q 030904 13 DSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDT-ALHLTCLYGYLPCVQLLL 91 (169)
Q Consensus 13 ~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~-~L~~a~~~~~~~~~~~ll 91 (169)
....++++|++.|.+++.. +..|.||||+|+ .|+.+++++|++. |++++.++..|.| |||+|+..++.+++++|+
T Consensus 23 g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~-~~~~~~v~~Ll~~-g~~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll 98 (156)
T 1bi7_B 23 GRVEEVRALLEAGANPNAP--NSYGRRPIQVMM-MGSARVAELLLLH-GAEPNCADPATLTRPVHDAAREGFLDTLVVLH 98 (156)
T ss_dssp TCHHHHHHHHTTTCCTTCC--CSSSCCTTTSSC-TTCHHHHHHHHTT-TCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCC--CCCCCCHHHHHH-cCCHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHHCCCHHHHHHHH
Confidence 3456888888889887754 557889999985 8999999999998 9999999999999 999999999999999999
Q ss_pred HcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchhhH
Q 030904 92 ERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQNDL 154 (169)
Q Consensus 92 ~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~~~ 154 (169)
++|++++.+|..|.||||+|+..|+.+++++|+++|+++ +.++..|.||.+.+.++
T Consensus 99 ~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~-------~~~~~~g~t~~~~~~~i 154 (156)
T 1bi7_B 99 RAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGT-------RGSNHARIDAAEGPSDI 154 (156)
T ss_dssp HHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC---------------------------
T ss_pred HcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCC-------CccCcCcCcccccCCCC
Confidence 999999999999999999999999999999999999998 78999999998866544
No 73
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.93 E-value=3.6e-25 Score=147.06 Aligned_cols=118 Identities=24% Similarity=0.309 Sum_probs=109.8
Q ss_pred hHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHhcChH
Q 030904 38 LRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFI 117 (169)
Q Consensus 38 ~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~ 117 (169)
.+|||.|+..|+.+.++.|++.....++.++..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+..|+.
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 82 (172)
T 3v30_A 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYT 82 (172)
T ss_dssp -CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred hhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCH
Confidence 47899999999999999999984444888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904 118 EIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ 162 (169)
Q Consensus 118 ~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~ 162 (169)
+++++|+++|+++ +.++..|.||||+|+ +++++|++.+
T Consensus 83 ~~v~~Ll~~g~~~-------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 125 (172)
T 3v30_A 83 DIVGLLLERDVDI-------NIYDWNGGTPLLYAVRGNHVKCVEALLARG 125 (172)
T ss_dssp HHHHHHHTTTCCT-------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCC-------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 9999999999997 789999999999995 9999999853
No 74
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.93 E-value=1.4e-25 Score=163.43 Aligned_cols=147 Identities=14% Similarity=0.109 Sum_probs=122.6
Q ss_pred hHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCC---HHHHHHH
Q 030904 14 SEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGY---LPCVQLL 90 (169)
Q Consensus 14 ~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~---~~~~~~l 90 (169)
...+++++.+.|++++.. .+..|.||||+|+..|+.+++++|++. |++++.++..|+||||+|+..|+ .++++.|
T Consensus 109 ~~~~~~~l~~~g~dvn~~-~d~~g~TpLh~Aa~~g~~~~v~~Ll~~-Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~l 186 (327)
T 1sw6_A 109 LQEVNDAFPNTQLNLNIP-VDEHGNTPLHWLTSIANLELVKHLVKH-GSNRLYGDNMGESCLVKAVKSVNNYDSGTFEAL 186 (327)
T ss_dssp HHHHHHHCTTSCCCSCSC-CSTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHH
T ss_pred HHHHHHHHHhcCCCcccc-cCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHhcccccHHHHHHH
Confidence 356778888888888751 456788999999999999999999998 99999999999999999999998 6788888
Q ss_pred HHcC-CCCCccCCCCCChHHHHHh----cChHHHHHHHHhcCC--------------------Cchhh------------
Q 030904 91 LERG-ASLEAKDEDGAIPLHDACA----GGFIEIVQLLINSAS--------------------GTECV------------ 133 (169)
Q Consensus 91 l~~g-~~~~~~~~~~~t~l~~a~~----~~~~~~~~~ll~~~~--------------------~~~~~------------ 133 (169)
++.+ ++++.+|..|+||||+|+. .|+.+++++|++.+. +++..
T Consensus 187 l~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~ 266 (327)
T 1sw6_A 187 LDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENL 266 (327)
T ss_dssp HHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHC
T ss_pred HHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHH
Confidence 8886 7899999999999999998 899999999988742 22100
Q ss_pred ------hhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904 134 ------KRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ 162 (169)
Q Consensus 134 ------~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~ 162 (169)
..-++.+|..|+||||+|+ +++++|++.|
T Consensus 267 ~~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~G 306 (327)
T 1sw6_A 267 DLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYG 306 (327)
T ss_dssp SHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 0015788999999999995 9999999853
No 75
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.92 E-value=5.7e-26 Score=158.08 Aligned_cols=125 Identities=26% Similarity=0.310 Sum_probs=114.2
Q ss_pred ccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCC------CCccCCC
Q 030904 30 LESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGAS------LEAKDED 103 (169)
Q Consensus 30 ~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~------~~~~~~~ 103 (169)
+...+..|.||||+|+..|+.+++++|++. |++++.++..|.||||+|+..++.+++++|++.|++ ++..+..
T Consensus 38 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~ 116 (236)
T 1ikn_D 38 LNFQNNLQQTPLHLAVITNQPEIAEALLGA-GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYN 116 (236)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHCCCSC-CCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTT
T ss_pred hhccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCC
Confidence 344566789999999999999999999988 999999999999999999999999999999999875 4677889
Q ss_pred CCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccC-CCCCcccchh-----hHHHHhhhcc
Q 030904 104 GAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDA-EGDTDCDDQN-----DLVSLFIMQQ 162 (169)
Q Consensus 104 ~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~-~g~tpl~~A~-----~~~~~li~~~ 162 (169)
|.||||+|+..|+.+++++|+++|+++ +.++. .|.||||+|+ +++++|++.|
T Consensus 117 g~t~L~~A~~~~~~~~v~~Ll~~g~~~-------~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g 174 (236)
T 1ikn_D 117 GHTCLHLASIHGYLGIVELLVSLGADV-------NAQEPCNGRTALHLAVDLQNPDLVSLLLKCG 174 (236)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHHTCCT-------TCCCTTTCCCHHHHHHHTTCHHHHHHHHTTT
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCC-------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 999999999999999999999999998 78887 9999999995 9999999953
No 76
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.92 E-value=1.2e-24 Score=163.76 Aligned_cols=139 Identities=27% Similarity=0.381 Sum_probs=127.0
Q ss_pred CChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHH
Q 030904 12 DDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLL 91 (169)
Q Consensus 12 ~~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll 91 (169)
.....++++|++.|.+++.. +..|.||||+|+..|+.+++++|++. +++++.++..|.||||+|+..++.+++++|+
T Consensus 255 ~g~~~~v~~Ll~~~~~~~~~--~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 331 (437)
T 1n11_A 255 EGHAEMVALLLSKQANGNLG--NKSGLTPLHLVAQEGHVPVADVLIKH-GVMVDATTRMGYTPLHVASHYGNIKLVKFLL 331 (437)
T ss_dssp TTCHHHHHHHHTTTCCTTCC--CTTCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCCCSSCCCHHHHHHHSSCSHHHHHHH
T ss_pred CCCHHHHHHHHhcCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHhC-CccCCCCCCCCCCHHHHHHHcCcHHHHHHHH
Confidence 34567889999999988754 55778999999999999999999999 9999999999999999999999999999999
Q ss_pred HcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhh
Q 030904 92 ERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIM 160 (169)
Q Consensus 92 ~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~ 160 (169)
++|++++.++..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||+++|. +++++|..
T Consensus 332 ~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~-------~~~~~~g~t~l~~A~~~g~~~~~~~l~~ 398 (437)
T 1n11_A 332 QHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASP-------NEVSSDGTTPLAIAKRLGYISVTDVLKV 398 (437)
T ss_dssp HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-------CCCCSSSCCHHHHHHHTTCHHHHHHHHH
T ss_pred hcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCC-------CCCCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence 999999999999999999999999999999999999998 799999999999995 66666644
No 77
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.92 E-value=3.1e-25 Score=158.68 Aligned_cols=144 Identities=15% Similarity=0.092 Sum_probs=92.6
Q ss_pred ChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 030904 13 DSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLE 92 (169)
Q Consensus 13 ~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~ 92 (169)
...+++++|++.|++++.. .|.||||+|+..|+.+++++|++. |++++.++..|.||||+|+..++.+++++|++
T Consensus 42 g~~~~v~~Ll~~g~~~~~~----~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~ 116 (285)
T 3kea_A 42 NNVRLVCTLLNAGALKNLL----ENEFPLHQAATLEDTKIVKILLFS-GLDDSQFDDKGNTALYYAVDSGNMQTVKLFVK 116 (285)
T ss_dssp TCHHHHHHHHHTTGGGSCC----TTCCHHHHHTTSSSCHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHhCCCCCCCC----CCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 3445666666666665543 256667777777777777777666 66666666667777777777777777777776
Q ss_pred cCCCCCccCCCC-CChHHHHHhcChHHHHHHHHhcCCCch-------------------hhhhh------hhcccCCCCC
Q 030904 93 RGASLEAKDEDG-AIPLHDACAGGFIEIVQLLINSASGTE-------------------CVKRM------LETVDAEGDT 146 (169)
Q Consensus 93 ~g~~~~~~~~~~-~t~l~~a~~~~~~~~~~~ll~~~~~~~-------------------~~~~~------~~~~~~~g~t 146 (169)
.|++++.++..| .||||+|+..|+.+++++|+++|.+.. .++.+ ++.++..|.|
T Consensus 117 ~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t 196 (285)
T 3kea_A 117 KNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFI 196 (285)
T ss_dssp HCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCC
T ss_pred cCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCC
Confidence 676666666666 566666666666666666666655441 00111 1567777878
Q ss_pred c-ccchh-----hHHHHhhhc
Q 030904 147 D-CDDQN-----DLVSLFIMQ 161 (169)
Q Consensus 147 p-l~~A~-----~~~~~li~~ 161 (169)
| ||+|+ +++++|++.
T Consensus 197 ~~L~~A~~~~~~~~v~~Ll~~ 217 (285)
T 3kea_A 197 PDIKLAIDNKDIEMLQALFKY 217 (285)
T ss_dssp TTHHHHHHHTCHHHHHHHTTS
T ss_pred hHHHHHHHcCCHHHHHHHHHc
Confidence 6 88774 777777774
No 78
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.92 E-value=3.2e-24 Score=156.43 Aligned_cols=146 Identities=22% Similarity=0.295 Sum_probs=119.5
Q ss_pred ChHHHHHHHHhcCCCCcccCC--------CcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCC-
Q 030904 13 DSEEDNALFEEDGVNMDLESE--------TPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGY- 83 (169)
Q Consensus 13 ~~~~~~~~l~~~g~~~~~~~~--------~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~- 83 (169)
....+++++++.|++++.... ...|.||||+|+..|+.+++++|+++.|++++.++..|.++++.++..+.
T Consensus 136 ~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~ 215 (337)
T 4g8k_A 136 GKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD 215 (337)
T ss_dssp TCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCT
T ss_pred CcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCc
Confidence 356688888899988875332 34578999999999999999999987689999999999999987765443
Q ss_pred ---HHHHHHHHHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhc-CCCchhhhhhhhcccCCCCCcccchh-----hH
Q 030904 84 ---LPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINS-ASGTECVKRMLETVDAEGDTDCDDQN-----DL 154 (169)
Q Consensus 84 ---~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~ 154 (169)
..++++|+++|++++.++..|.||||+|+..|+.++++.|++. |+++ +.+|.+|+||||+|+ ++
T Consensus 216 ~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~v-------n~~d~~G~TpL~~A~~~g~~~i 288 (337)
T 4g8k_A 216 SDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEI-------NDTDSDGKTALLLAVELKLKKI 288 (337)
T ss_dssp TTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCT-------TCBCTTSCBHHHHHHHTTCHHH
T ss_pred ccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcc-------cCcCCCCCCHHHHHHHcCCHHH
Confidence 3577889999999999999999999999999999999988875 6776 788999999999985 88
Q ss_pred HHHhhhcc-ccc
Q 030904 155 VSLFIMQQ-EVN 165 (169)
Q Consensus 155 ~~~li~~~-~~~ 165 (169)
+++||+.| ++|
T Consensus 289 v~~Ll~~GAd~n 300 (337)
T 4g8k_A 289 AELLCKRGASTD 300 (337)
T ss_dssp HHHHHTTSCSST
T ss_pred HHHHHHCCCCCC
Confidence 88888854 443
No 79
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.92 E-value=1.2e-24 Score=152.54 Aligned_cols=109 Identities=29% Similarity=0.327 Sum_probs=103.6
Q ss_pred cchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccC-CCCCChHHHHHh
Q 030904 35 PPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKD-EDGAIPLHDACA 113 (169)
Q Consensus 35 ~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~-~~~~t~l~~a~~ 113 (169)
..|.||||+|+..|+.++++.|++ +++++.++..|+||||+|+..|+.+++++|+++|++++.++ ..|.||||+|+.
T Consensus 43 ~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~ 120 (244)
T 3ui2_A 43 SEYETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 120 (244)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHTTT--TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHH
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHH
Confidence 468899999999999999999997 78999999999999999999999999999999999999988 889999999999
Q ss_pred cChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh
Q 030904 114 GGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN 152 (169)
Q Consensus 114 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~ 152 (169)
.|+.+++++|+++|+++ +.+|..|.||||+|+
T Consensus 121 ~g~~~~v~~Ll~~ga~~-------~~~d~~g~t~l~~A~ 152 (244)
T 3ui2_A 121 YVRPEVVEALVELGADI-------EVEDERGLTALELAR 152 (244)
T ss_dssp TTCHHHHHHHHHTTCCT-------TCCCTTCCCHHHHHH
T ss_pred cCCHHHHHHHHHCCCCC-------CCCCCCCCcHHHHHH
Confidence 99999999999999998 789999999999984
No 80
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.92 E-value=3e-24 Score=129.02 Aligned_cols=92 Identities=36% Similarity=0.568 Sum_probs=87.9
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHhcCh
Q 030904 37 HLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGF 116 (169)
Q Consensus 37 ~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~ 116 (169)
|.||||+|+..|+.+++++|++. +++++.++..|.||||+|+..++.+++++|++.|++++.+|..|.||||+|+..|+
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~-g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~ 80 (93)
T 1n0q_A 2 GRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 80 (93)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CCcHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence 57999999999999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCC
Q 030904 117 IEIVQLLINSASG 129 (169)
Q Consensus 117 ~~~~~~ll~~~~~ 129 (169)
.+++++|+++|++
T Consensus 81 ~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 81 LEVVKLLLEAGAY 93 (93)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCC
Confidence 9999999999864
No 81
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.92 E-value=5e-24 Score=163.04 Aligned_cols=143 Identities=24% Similarity=0.292 Sum_probs=119.0
Q ss_pred CChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCccc------CCCCCcHHHHHHh---cC
Q 030904 12 DDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEP------VEDGDTALHLTCL---YG 82 (169)
Q Consensus 12 ~~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~------~~~g~~~L~~a~~---~~ 82 (169)
++.+...+++..+-....+........+.||.|+..|+.+.++.|++. |++++.+ +..|.||||+|+. .|
T Consensus 107 s~~~~re~fIraky~~~~f~~~~~~~~~~L~~A~~~g~~~~v~~ll~~-g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g 185 (497)
T 3lvq_E 107 SDMGTRRDYIMAKYVEHRFARRCTPEPQRLWTAICNRDLLSVLEAFAN-GQDFGQPLPGPDAQAPEELVLHLAVKVANQA 185 (497)
T ss_dssp CCHHHHHHHHHHHHTTCTTSCCCC-CHHHHHHHHHHTCHHHHHHHHHT-TCCSSSCBCCSSSCCSCBCHHHHHHHTCCTT
T ss_pred CcHHHHHHHHHHHhhcccccccccccHHHHHHHHhccCHHHHHHHHhh-cccccCCCCCcccccccchHHHHHHHhcccc
Confidence 344445555554444433333333444779999999999999999998 8998877 7889999999965 88
Q ss_pred CHHHHHHHHHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHH
Q 030904 83 YLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSL 157 (169)
Q Consensus 83 ~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~ 157 (169)
+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+ +++++
T Consensus 186 ~~~~v~~Ll~~ga~vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~-------~~~d~~g~tpl~~A~~~~~~~~~~~ 258 (497)
T 3lvq_E 186 SLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALV-------GTVNEAGETALDIARKKHHKECEEL 258 (497)
T ss_dssp THHHHHHHHHHSCCTTCCCSSSCCHHHHHTTTTCHHHHHHHHHTCCCC-------SCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-------CCcCCCCCCHHHHHHHcCCHHHHHH
Confidence 999999999999999999999999999999999999999999999998 799999999999995 89999
Q ss_pred hhhcc
Q 030904 158 FIMQQ 162 (169)
Q Consensus 158 li~~~ 162 (169)
|++.|
T Consensus 259 Ll~~g 263 (497)
T 3lvq_E 259 LEQAQ 263 (497)
T ss_dssp HHHTC
T ss_pred HHHhC
Confidence 99854
No 82
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.92 E-value=5.7e-24 Score=153.31 Aligned_cols=144 Identities=24% Similarity=0.283 Sum_probs=119.9
Q ss_pred CCChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcc------cCCCCCcHHHHHHhc---
Q 030904 11 EDDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDE------PVEDGDTALHLTCLY--- 81 (169)
Q Consensus 11 ~~~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~------~~~~g~~~L~~a~~~--- 81 (169)
+++.+...+++...-....+........++|+.|+..|+.+.++.|+.. +++++. .+..|.||||+|+..
T Consensus 125 ~s~~~~r~~~I~~Ky~~~~f~~~~~~~~~~L~~A~~~g~~~~v~~ll~~-g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~ 203 (301)
T 2b0o_E 125 ESDMGTRRDYIMAKYVEHRFARRCTPEPQRLWTAICNRDLLSVLEAFAN-GQDFGQPLPGPDAQAPEELVLHLAVKVANQ 203 (301)
T ss_dssp TCCHHHHHHHHHHHHTSCTTSCCCC-CHHHHHHHHHTTCHHHHHHHHHT-TCCTTSCEECSSSCSCEECHHHHHHHTCCT
T ss_pred cccHHHHHHHHHHHHHhhhhhcccCchHHHHhhhhhccCHHHHHHHHhc-CCcccccCCCcccCCCCccHHHHHHHhccc
Confidence 3444555555554433323333344456789999999999999999987 888887 588999999999987
Q ss_pred CCHHHHHHHHHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHH
Q 030904 82 GYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVS 156 (169)
Q Consensus 82 ~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~ 156 (169)
++.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+ ++++
T Consensus 204 ~~~~iv~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~-------~~~d~~G~TpL~~A~~~~~~~iv~ 276 (301)
T 2b0o_E 204 ASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALV-------GTVNEAGETALDIARKKHHKECEE 276 (301)
T ss_dssp TTHHHHHHHHHHSSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCC-------SCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred CcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-------CCcCCCCCCHHHHHHHcCCHHHHH
Confidence 8899999999999999999999999999999999999999999999998 799999999999995 8999
Q ss_pred Hhhhcc
Q 030904 157 LFIMQQ 162 (169)
Q Consensus 157 ~li~~~ 162 (169)
+|++.+
T Consensus 277 ~Ll~~g 282 (301)
T 2b0o_E 277 LLEQAQ 282 (301)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 999854
No 83
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.92 E-value=1.7e-24 Score=153.66 Aligned_cols=134 Identities=21% Similarity=0.284 Sum_probs=113.2
Q ss_pred HHHhcCCCCccc--CCCcchhHHHHHHHHc---CCHHHHHHHHHhCCCC-----------CcccCCCCCcHHHHHHhcCC
Q 030904 20 LFEEDGVNMDLE--SETPPHLRDLAAAAQL---GDVHSLRLALDNLSGS-----------IDEPVEDGDTALHLTCLYGY 83 (169)
Q Consensus 20 ~l~~~g~~~~~~--~~~~~~~t~l~~a~~~---g~~~~~~~ll~~~~~~-----------~~~~~~~g~~~L~~a~~~~~ 83 (169)
...+.+.+++.. ..+..|.||||+|+.. |+.+++++|++. +++ ...++..|.||||+|+..++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~-ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~ 113 (273)
T 2pnn_A 35 FLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDV-ARKTDSLKQFVNASYTDSYYKGQTALHIAIERRN 113 (273)
T ss_dssp HHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHH-HHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTC
T ss_pred HHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHh-hccccchhHHhhcccccccCCCCCHHHHHHHcCC
Confidence 333455555321 2366889999999986 999999999997 543 22256789999999999999
Q ss_pred HHHHHHHHHcCCCCCccCC--------------CCCChHHHHHhcChHHHHHHHHh---cCCCchhhhhhhhcccCCCCC
Q 030904 84 LPCVQLLLERGASLEAKDE--------------DGAIPLHDACAGGFIEIVQLLIN---SASGTECVKRMLETVDAEGDT 146 (169)
Q Consensus 84 ~~~~~~ll~~g~~~~~~~~--------------~~~t~l~~a~~~~~~~~~~~ll~---~~~~~~~~~~~~~~~~~~g~t 146 (169)
.+++++|++.|++++.++. .|.||||+|+..|+.+++++|++ .|+++ +.+|..|+|
T Consensus 114 ~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~-------~~~d~~g~t 186 (273)
T 2pnn_A 114 MTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADI-------SARDSVGNT 186 (273)
T ss_dssp HHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCT-------TCCCTTSCC
T ss_pred HHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCc-------eeeCCCCCc
Confidence 9999999999999999887 79999999999999999999999 89998 799999999
Q ss_pred cccchh--------------hHHHHhhhc
Q 030904 147 DCDDQN--------------DLVSLFIMQ 161 (169)
Q Consensus 147 pl~~A~--------------~~~~~li~~ 161 (169)
|||+|+ +++++|++.
T Consensus 187 pLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ 215 (273)
T 2pnn_A 187 VLHALVEVADNTVDNTKFVTSMYNEILIL 215 (273)
T ss_dssp HHHHHHHHCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCcchhHHHHHHHHHHHHHHh
Confidence 999985 577888884
No 84
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.92 E-value=6.7e-24 Score=154.78 Aligned_cols=121 Identities=21% Similarity=0.270 Sum_probs=109.4
Q ss_pred cchhHHHHHHHHc---CCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHH
Q 030904 35 PPHLRDLAAAAQL---GDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDA 111 (169)
Q Consensus 35 ~~~~t~l~~a~~~---g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a 111 (169)
..+.||||+|+.. +..+++++|++. +++++.++..|.||||+|+..++.+++++|+++|++++.+|..|.||||+|
T Consensus 209 ~~~~t~L~~A~~~~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A 287 (351)
T 3utm_A 209 QSHETALHCAVASLHPKRKQVAELLLRK-GANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRA 287 (351)
T ss_dssp TTCCCHHHHHHHCCSTTHHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred CCCCCHHHHHHHHhCccHHHHHHHHHHc-CCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence 4567999999999 558999999988 999999999999999999999999999999999999999999999999999
Q ss_pred HhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-hHHHHhhhccc
Q 030904 112 CAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-DLVSLFIMQQE 163 (169)
Q Consensus 112 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-~~~~~li~~~~ 163 (169)
+..|+.+++++|+++|+++ +.+|..|.||+++|. +++++|.+...
T Consensus 288 ~~~~~~~~v~~Ll~~gad~-------~~~~~~g~tal~~a~~~~~~~l~~~~~ 333 (351)
T 3utm_A 288 ALAGHLQTCRLLLSYGSDP-------SIISLQGFTAAQMGNEAVQQILSESTP 333 (351)
T ss_dssp HHHTCHHHHHHHHHTTCCT-------TCCCTTSCCHHHHSCHHHHHHHHHC--
T ss_pred HHcCcHHHHHHHHHcCCCC-------CCcCCCCCChhhhhhHHHHHHHHhccc
Confidence 9999999999999999998 799999999999996 55555555443
No 85
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.91 E-value=2.7e-25 Score=154.42 Aligned_cols=137 Identities=15% Similarity=0.133 Sum_probs=118.4
Q ss_pred ChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 030904 13 DSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLE 92 (169)
Q Consensus 13 ~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~ 92 (169)
....+++.+++.|++++. .+..|.||||+|+..|+.+++++|++. |++++.++..|+||||+|+..++.+++++|++
T Consensus 32 g~~~~v~~Ll~~g~~~~~--~d~~g~tpLh~A~~~g~~~~v~~Ll~~-ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~ 108 (229)
T 2vge_A 32 GELEVVQQAVKEMNDPSQ--PNEEGITALHNAICGANYSIVDFLITA-GANVNSPDSHGWTPLHCAASCNDTVICMALVQ 108 (229)
T ss_dssp TCHHHHHHHHHHSSCTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT
T ss_pred CCHHHHHHHHhcCCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 345678888899998875 456788999999999999999999998 99999999999999999999999999999999
Q ss_pred cCCCCCccC-CCCCChHHHH--HhcChHHHHHHHHhcCCCchhhhh-------------------------hhhcccCCC
Q 030904 93 RGASLEAKD-EDGAIPLHDA--CAGGFIEIVQLLINSASGTECVKR-------------------------MLETVDAEG 144 (169)
Q Consensus 93 ~g~~~~~~~-~~~~t~l~~a--~~~~~~~~~~~ll~~~~~~~~~~~-------------------------~~~~~~~~g 144 (169)
.|++++..+ ..|.||||+| +..|+.+++++|++.|++++.... -++.+|.+|
T Consensus 109 ~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~ll~~ga~~~~~~~d~~G 188 (229)
T 2vge_A 109 HGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELSFREGESVTVLRRDGPE 188 (229)
T ss_dssp TTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSSTTBCCBCTTCEEEEEESSCTT
T ss_pred cCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhccccccCccccccccccccCCCc
Confidence 999999986 6999999999 999999999999998876631110 034567888
Q ss_pred CCcccchh
Q 030904 145 DTDCDDQN 152 (169)
Q Consensus 145 ~tpl~~A~ 152 (169)
+||||+|+
T Consensus 189 ~TpL~~A~ 196 (229)
T 2vge_A 189 ETDWWWAA 196 (229)
T ss_dssp CSSEEEEE
T ss_pred ccHHHHHH
Confidence 99999885
No 86
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.91 E-value=7.5e-24 Score=146.99 Aligned_cols=138 Identities=17% Similarity=0.187 Sum_probs=89.4
Q ss_pred HHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCC-HHHHHHHHHc
Q 030904 15 EEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGY-LPCVQLLLER 93 (169)
Q Consensus 15 ~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~-~~~~~~ll~~ 93 (169)
..+++++++.|.+++.. +..+.||||+|+..|+.+++++|++. +++++.++..|.||||+|+..+. .+++++|++.
T Consensus 89 ~~~v~~Ll~~g~~~~~~--~~~g~t~l~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~ 165 (240)
T 3eu9_A 89 LSMVVQLMKYGADPSLI--DGEGCSCIHLAAQFGHTSIVAYLIAK-GQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTF 165 (240)
T ss_dssp HHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHT
T ss_pred HHHHHHHHHcCCCCccc--CCCCCCHHHHHHHcCHHHHHHHHHhc-CCCccccCCCCCcHHHHHHHhCChHHHHHHHHhc
Confidence 34555555655555432 33455666666666666666666665 66666666666666666664443 5566666666
Q ss_pred CCCCCccCC-CCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904 94 GASLEAKDE-DGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ 162 (169)
Q Consensus 94 g~~~~~~~~-~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~ 162 (169)
|++++..+. .|.||||+|+..|+.+++++|+++|+++ +.++..|.||+++|+ +++++|++.+
T Consensus 166 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-------~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~ 233 (240)
T 3eu9_A 166 NVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANV-------DAQNIKGESALDLAKQRKNVWMINHLQEAR 233 (240)
T ss_dssp TCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCT-------TCBCTTSCBHHHHHHHTTCHHHHHHHHHHC
T ss_pred CCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCC-------CCcCCCCCCHHHHHHHcCcHHHHHHHHHhh
Confidence 666666654 6677777777777777777777777776 677777777777774 7777777744
No 87
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.91 E-value=1.2e-23 Score=150.11 Aligned_cols=122 Identities=24% Similarity=0.339 Sum_probs=111.3
Q ss_pred CcchhHHHHHHHHcCCHHHHHHHHHhCCCCCc------ccCCCCCcHHHHHHhc---CCHHHHHHHHHcCCCCCccCCCC
Q 030904 34 TPPHLRDLAAAAQLGDVHSLRLALDNLSGSID------EPVEDGDTALHLTCLY---GYLPCVQLLLERGASLEAKDEDG 104 (169)
Q Consensus 34 ~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~------~~~~~g~~~L~~a~~~---~~~~~~~~ll~~g~~~~~~~~~~ 104 (169)
.....++|+.|+..|+.+.++.++.. |.+++ ..+..|.||||+|+.. ++.+++++|++.|++++.+|..|
T Consensus 127 ~~~~l~~l~~a~~~~d~~~~~~ll~~-g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g 205 (278)
T 1dcq_A 127 TAAKLHSLCEAVKTRDIFGLLQAYAD-GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKG 205 (278)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHT-TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTC
T ss_pred cchhhhhhhhHhhhcccHHHHHHHHh-hcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCC
Confidence 34567899999999999999999988 77744 4478899999999999 89999999999999999999999
Q ss_pred CChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhccc
Q 030904 105 AIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQE 163 (169)
Q Consensus 105 ~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~~ 163 (169)
.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+ +++++|++.+.
T Consensus 206 ~TpLh~A~~~g~~~~v~~Ll~~gad~-------~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga 262 (278)
T 1dcq_A 206 STALHYCCLTDNAECLKLLLRGKASI-------EIANESGETPLDIAKRLKHEHCEELLTQALS 262 (278)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCT-------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCC-------CCccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 99999999999999999999999998 899999999999995 99999999654
No 88
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.91 E-value=4.6e-24 Score=157.91 Aligned_cols=138 Identities=23% Similarity=0.295 Sum_probs=69.6
Q ss_pred ChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCC---CCCcccCCCCCcHHHHHHhcC---CHHH
Q 030904 13 DSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLS---GSIDEPVEDGDTALHLTCLYG---YLPC 86 (169)
Q Consensus 13 ~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~---~~~~~~~~~g~~~L~~a~~~~---~~~~ 86 (169)
....++++|++.|++++.. +..|.||||+|+..|+.+++++|++. + ++++..+..|.||||+|+..+ +.++
T Consensus 177 g~~~iv~~Ll~~ga~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~ 253 (373)
T 2fo1_E 177 RRRRLVAYLMKAGADPTIY--NKSERSALHQAAANRDFGMMVYMLNS-TKLKGDIEELDRNGMTALMIVAHNEGRDQVAS 253 (373)
T ss_dssp TCHHHHHHHHHTTCCSCCC--CTTCCCHHHHHHHTTCHHHHHHHTTS-HHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHH
T ss_pred ChHHHHHHHHHCCCCCccc--CCCCCCHHHHHHHCCCHHHHHHHHhc-CccccChhhcCCCCCCHHHHHHHhCCcchHHH
Confidence 3445666666666665533 33444555555555555555555544 2 344444555555555555444 4445
Q ss_pred HHHHHHcCCCCCc--------cCCCCCChHHHHHhcChHHHHHHHHhcC-CCchhhhhhhhcccCCCCCcccchh-----
Q 030904 87 VQLLLERGASLEA--------KDEDGAIPLHDACAGGFIEIVQLLINSA-SGTECVKRMLETVDAEGDTDCDDQN----- 152 (169)
Q Consensus 87 ~~~ll~~g~~~~~--------~~~~~~t~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~~~~~g~tpl~~A~----- 152 (169)
+++|++.|++++. .+..|.||||+|+..|+.+++++|++.+ +++ +.+|..|.||||+|+
T Consensus 254 v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~-------n~~d~~g~TpL~~A~~~g~~ 326 (373)
T 2fo1_E 254 AKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNK-------DKQDEDGKTPIMLAAQEGRI 326 (373)
T ss_dssp HHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCT-------TCCCTTCCCHHHHHHHHTCH
T ss_pred HHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCc-------cCcCCCCCCHHHHHHHcCCH
Confidence 5555555544443 3334455555555555555555555443 343 444445555555542
Q ss_pred hHHHHhhh
Q 030904 153 DLVSLFIM 160 (169)
Q Consensus 153 ~~~~~li~ 160 (169)
+++++|++
T Consensus 327 ~iv~~Ll~ 334 (373)
T 2fo1_E 327 EVVMYLIQ 334 (373)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444444
No 89
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.91 E-value=9.7e-24 Score=156.16 Aligned_cols=143 Identities=11% Similarity=0.091 Sum_probs=123.5
Q ss_pred HHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcC---
Q 030904 18 NALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERG--- 94 (169)
Q Consensus 18 ~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g--- 94 (169)
.+.+++.|++++.. +..|.||||+|+..|+.+++++|++. |++++.++..|.||||+|+..++.+++++|++.+
T Consensus 149 ~~~ll~~ga~vn~~--d~~g~TpL~~A~~~g~~~iv~~Ll~~-ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~ 225 (373)
T 2fo1_E 149 AKECIAAGADVNAM--DCDENTPLMLAVLARRRRLVAYLMKA-GADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLK 225 (373)
T ss_dssp HHHHHHTCCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHH
T ss_pred HHHHHhcCCCCcCC--CCCCCCHHHHHHHcChHHHHHHHHHC-CCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccc
Confidence 44556888888754 55788999999999999999999998 9999999999999999999999999999999987
Q ss_pred CCCCccCCCCCChHHHHHhcC---hHHHHHHHHhcCCCchhhh-hhhhcccCCCCCcccchh-----hHHHHhhhccc
Q 030904 95 ASLEAKDEDGAIPLHDACAGG---FIEIVQLLINSASGTECVK-RMLETVDAEGDTDCDDQN-----DLVSLFIMQQE 163 (169)
Q Consensus 95 ~~~~~~~~~~~t~l~~a~~~~---~~~~~~~ll~~~~~~~~~~-~~~~~~~~~g~tpl~~A~-----~~~~~li~~~~ 163 (169)
++++..+..|.||||+|+..+ +.+++++|++.|++++... ...+.++..|.||||+|+ +++++|++.++
T Consensus 226 ~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~ 303 (373)
T 2fo1_E 226 GDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKG 303 (373)
T ss_dssp HTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSC
T ss_pred cChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcC
Confidence 799999999999999999988 8999999999999873100 001236779999999995 99999998653
No 90
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.91 E-value=1.3e-24 Score=158.36 Aligned_cols=133 Identities=20% Similarity=0.096 Sum_probs=117.4
Q ss_pred CChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCC---HHHHHHHHHhCCCCCcccCCCCCcHHHHHHh----cCCH
Q 030904 12 DDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGD---VHSLRLALDNLSGSIDEPVEDGDTALHLTCL----YGYL 84 (169)
Q Consensus 12 ~~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~---~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~----~~~~ 84 (169)
....+++++|++.|++++.. +..|.||||+|+..|+ .+.++.|++...++++.++..|+||||+|+. .++.
T Consensus 141 ~g~~~~v~~Ll~~Gad~n~~--d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~ 218 (327)
T 1sw6_A 141 IANLELVKHLVKHGSNRLYG--DNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCS 218 (327)
T ss_dssp TTCHHHHHHHHHTTCCTTBC--CTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCH
T ss_pred cCCHHHHHHHHHcCCCCCCc--CCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccH
Confidence 34567899999999998754 5578899999999998 6778888887447789999999999999998 8999
Q ss_pred HHHHHHHHcCC---------------------------------------------CCCccCCCCCChHHHHHhcChHHH
Q 030904 85 PCVQLLLERGA---------------------------------------------SLEAKDEDGAIPLHDACAGGFIEI 119 (169)
Q Consensus 85 ~~~~~ll~~g~---------------------------------------------~~~~~~~~~~t~l~~a~~~~~~~~ 119 (169)
+++++|++.+. +++.+|..|+||||+|+..|+.++
T Consensus 219 ~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~~~ 298 (327)
T 1sw6_A 219 AAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISI 298 (327)
T ss_dssp HHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHcCCHHH
Confidence 99999987743 578889999999999999999999
Q ss_pred HHHHHhcCCCchhhhhhhhcccCCCCCcccchhh
Q 030904 120 VQLLINSASGTECVKRMLETVDAEGDTDCDDQND 153 (169)
Q Consensus 120 ~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~~ 153 (169)
+++|+++|+++ +.+|..|+||||+|++
T Consensus 299 v~~Ll~~Gad~-------~~~d~~G~TpL~~A~~ 325 (327)
T 1sw6_A 299 VDALLDYGADP-------FIANKSGLRPVDFGAG 325 (327)
T ss_dssp HHHHHHTTCCT-------TCCCTTSCCGGGGTCC
T ss_pred HHHHHHcCCCC-------cccCCCCCCHHHHHHh
Confidence 99999999998 8999999999999964
No 91
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.91 E-value=2.2e-23 Score=133.59 Aligned_cols=112 Identities=21% Similarity=0.345 Sum_probs=102.9
Q ss_pred ChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 030904 13 DSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLE 92 (169)
Q Consensus 13 ~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~ 92 (169)
....+++++++.|.+++.. +..|.||||+|+..|+.+++++|++. +++++.++..|.||||+|+..++.+++++|++
T Consensus 25 g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~ 101 (136)
T 2jab_A 25 GQDDEVRILMANGADVNAK--DEYGLTPLYLATAHGHLEIVEVLLKN-GADVNAVDAIGFTPLHLAAFIGHLEIAEVLLK 101 (136)
T ss_dssp TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCc--CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 4556788888989887654 56788999999999999999999998 99999999999999999999999999999999
Q ss_pred cCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcC
Q 030904 93 RGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSA 127 (169)
Q Consensus 93 ~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~ 127 (169)
+|++++.+|..|.||||+|+..|+.+++++|+++|
T Consensus 102 ~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 102 HGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred cCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 99999999999999999999999999999999876
No 92
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.91 E-value=3.9e-24 Score=133.25 Aligned_cols=108 Identities=28% Similarity=0.382 Sum_probs=100.1
Q ss_pred CCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHH
Q 030904 33 ETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDAC 112 (169)
Q Consensus 33 ~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~ 112 (169)
.+..|.||||+|+..|+.+++++|++. +++++.++..|.||||+|+..++.+++++|++.|++++.+|..|.||||+|+
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~ 83 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLSK-GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAK 83 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTTT-TCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence 356788999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred hcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcc
Q 030904 113 AGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDC 148 (169)
Q Consensus 113 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl 148 (169)
..++.+++++|+++|+++ +.++..|.+|-
T Consensus 84 ~~~~~~~~~~Ll~~ga~~-------n~~~~~~~~~~ 112 (115)
T 2l6b_A 84 KNGHHEIVKLLDAKGADV-------NARSWGSSHHH 112 (115)
T ss_dssp TTTCHHHHHHHHTTSSSH-------HHHSCCCC---
T ss_pred HCCCHHHHHHHHHcCCCC-------CcCCccccccc
Confidence 999999999999999998 78888898874
No 93
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.91 E-value=4.2e-24 Score=136.92 Aligned_cols=114 Identities=18% Similarity=0.182 Sum_probs=105.1
Q ss_pred CChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCC-CCcHHHHHHhcCCHHHHHHH
Q 030904 12 DDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVED-GDTALHLTCLYGYLPCVQLL 90 (169)
Q Consensus 12 ~~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~-g~~~L~~a~~~~~~~~~~~l 90 (169)
....++++++++.|.+++.. +..+.||||+|+. |+.+++++|++. +++++.++.. |.||||+|+..++.+++++|
T Consensus 22 ~~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~-~~~~~v~~Ll~~-g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 97 (136)
T 1d9s_A 22 RGQVETVRQLLEAGADPNAL--NRFGRRPIQVMMM-GSAQVAELLLLH-GAEPNCADPATLTRPVHDAAREGFLDTLVVL 97 (136)
T ss_dssp TTCHHHHHHHHHTTCCTTCC--CTTCCTTTTTSTT-SCHHHHHHHHHH-TCCSSCCBTTTTBCHHHHHHHHTCHHHHHHH
T ss_pred cCCHHHHHHHHHcCCCcCCc--CCCCCCHHHHHHc-CCHHHHHHHHHC-CCCCCCcCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 34567888899989887754 5678899999999 999999999998 9999999999 99999999999999999999
Q ss_pred HHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCC
Q 030904 91 LERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASG 129 (169)
Q Consensus 91 l~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~ 129 (169)
++.|++++.+|..|.||||+|+..++.+++++|+++|++
T Consensus 98 l~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 98 HRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp HHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred HHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999874
No 94
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.91 E-value=3.8e-23 Score=143.41 Aligned_cols=116 Identities=22% Similarity=0.199 Sum_probs=87.9
Q ss_pred CChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCccc-CCCCCcHHHHHHhcCCHHHHHHH
Q 030904 12 DDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEP-VEDGDTALHLTCLYGYLPCVQLL 90 (169)
Q Consensus 12 ~~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~-~~~g~~~L~~a~~~~~~~~~~~l 90 (169)
.+..++++.+++.|.+++.. +..|.||||+|+..|+.+++++|++. +.+++.. +..|.||||+|+..++.+++++|
T Consensus 19 ~g~~~~~~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~L 95 (240)
T 3eu9_A 19 YGIYERCRELVEAGYDVRQP--DKENVTLLHWAAINNRIDLVKYYISK-GAIVDQLGGDLNSTPLHWATRQGHLSMVVQL 95 (240)
T ss_dssp TTCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCBTTTTBCHHHHHHHHTCHHHHHHH
T ss_pred cCChHHHHHHHHcCCCcCCC--CCCCCCHHHHHHHhCCHHHHHHHHHc-CCcchhhcCCcCCChhHHHHHcCCHHHHHHH
Confidence 34456677777777776543 45677888888888888888888877 6655544 34478888888888888888888
Q ss_pred HHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCc
Q 030904 91 LERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGT 130 (169)
Q Consensus 91 l~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~ 130 (169)
++.|++++..+..|.||||+|+..|+.+++++|++.|+++
T Consensus 96 l~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~ 135 (240)
T 3eu9_A 96 MKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV 135 (240)
T ss_dssp HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred HHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCc
Confidence 8888888888888888888888888888888888887776
No 95
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.90 E-value=1.6e-23 Score=150.95 Aligned_cols=125 Identities=22% Similarity=0.266 Sum_probs=108.1
Q ss_pred HHHHHHHHhcCCCCccc----CCCcchhHHHHHHHHc---CCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHH
Q 030904 15 EEDNALFEEDGVNMDLE----SETPPHLRDLAAAAQL---GDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCV 87 (169)
Q Consensus 15 ~~~~~~l~~~g~~~~~~----~~~~~~~t~l~~a~~~---g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~ 87 (169)
...+..+++.|.+++.. ..+..|.||||+|+.. |+.+++++|++. |++++.+|..|+||||+|+..++.+++
T Consensus 164 ~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~-gadvn~~d~~G~TpLh~A~~~g~~~~v 242 (301)
T 2b0o_E 164 LLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN-GGHLDAKAADGNTALHYAALYNQPDCL 242 (301)
T ss_dssp HHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHH-SSCTTCCCTTCCCHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence 33455667888887652 1466789999999997 899999999999 999999999999999999999999999
Q ss_pred HHHHHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchhh
Q 030904 88 QLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQND 153 (169)
Q Consensus 88 ~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~~ 153 (169)
++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++ .|.||||+|++
T Consensus 243 ~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-------------~g~tpLh~A~~ 295 (301)
T 2b0o_E 243 KLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG-------------TFAFPLHVDYS 295 (301)
T ss_dssp HHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-------------TTSSCCC----
T ss_pred HHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-------------CCCChhHHHHh
Confidence 999999999999999999999999999999999999998754 47999999974
No 96
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.90 E-value=2.9e-23 Score=153.15 Aligned_cols=118 Identities=22% Similarity=0.258 Sum_probs=109.4
Q ss_pred hhHHHHHHHHc-CCHHHHHHHHHhCCCCCcccC--CCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHh
Q 030904 37 HLRDLAAAAQL-GDVHSLRLALDNLSGSIDEPV--EDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACA 113 (169)
Q Consensus 37 ~~t~l~~a~~~-g~~~~~~~ll~~~~~~~~~~~--~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~ 113 (169)
+.|+||.|+.. |+.++++.|++. |++++..+ ..|.||||+|+..++.+++++|+++|++++..|..|.||||+|+.
T Consensus 199 ~~t~L~~Aa~~~g~~~~v~~LL~~-Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~ 277 (368)
T 3jue_A 199 PGALLFRASGHPPSLPTMADALAH-GADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATI 277 (368)
T ss_dssp HHHHHHHHTSSSCCHHHHHHHHHT-TCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred CCcHHHHHHHccCCHHHHHHHHHc-CCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence 35799999999 999999999988 99999888 889999999999999999999999999999999999999999999
Q ss_pred cChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904 114 GGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ 162 (169)
Q Consensus 114 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~ 162 (169)
.|+.+++++|+++|+++ +.+|..|.||||+|+ +++++|+..+
T Consensus 278 ~g~~~~v~~LL~~Gad~-------~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~ 324 (368)
T 3jue_A 278 LGHTGLACLFLKRGADL-------GARDSEGRDPLTIAMETANADIVTLLRLAK 324 (368)
T ss_dssp HTCHHHHHHHHHTTCCT-------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHCcCCC-------CCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 99999999999999998 799999999999995 8899988754
No 97
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.90 E-value=3.6e-24 Score=149.53 Aligned_cols=118 Identities=15% Similarity=0.149 Sum_probs=81.5
Q ss_pred chhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHhcC
Q 030904 36 PHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGG 115 (169)
Q Consensus 36 ~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~ 115 (169)
.|.||||.|+..++.+.++.|++. |++++.. ..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|
T Consensus 4 ~g~t~L~~a~~~~~~~~~~~ll~~-g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g 81 (239)
T 1ycs_B 4 TGQVSLPPGKRTNLRKTGSERIAH-GMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAG 81 (239)
T ss_dssp -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHT
T ss_pred cccccCchhhhhhhHHHHHHHhcc-CCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence 478999999999999999999998 8888754 67899999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904 116 FIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ 162 (169)
Q Consensus 116 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~ 162 (169)
+.+++++|+++|+++ +.+|..|+||||+|+ +++++|++.+
T Consensus 82 ~~~~v~~Ll~~ga~~-------~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g 126 (239)
T 1ycs_B 82 HTEIVKFLVQFGVNV-------NAADSDGWTPLHCAASCNNVQVCKFLVESG 126 (239)
T ss_dssp CHHHHHHHHHHTCCT-------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred CHHHHHHHHHcCCCC-------CccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 999999999999998 799999999999995 9999999954
No 98
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.90 E-value=1.3e-22 Score=147.88 Aligned_cols=148 Identities=17% Similarity=0.249 Sum_probs=119.7
Q ss_pred ChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 030904 13 DSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLE 92 (169)
Q Consensus 13 ~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~ 92 (169)
+..+++++|++.|++++... +..|+||||+|+..|+.+++++|++. |++++.++..+.++++.++..+...++..++.
T Consensus 36 g~~~~V~~LL~~Gadvn~~~-~~~g~TpLh~A~~~g~~~iv~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (337)
T 4g8k_A 36 EDVDLVQQLLEGGANVNFQE-EEGGWTPLHNAVQMSREDIVELLLRH-GADPVLRKKNGATPFILAAIAGSVKLLKLFLS 113 (337)
T ss_dssp TCHHHHHHHHHHTCCTTCCC-TTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHT
T ss_pred CCHHHHHHHHHCCCCCCccC-CCCCcCHHHHHHHcCCHHHHHHHHHc-CCchhhhccCCCchhHHHHhcccchhhHHhhh
Confidence 44567888888888887532 23477889999988898888888887 88888888888888888888888888888888
Q ss_pred cCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhh---hhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904 93 RGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVK---RMLETVDAEGDTDCDDQN-----DLVSLFIMQQ 162 (169)
Q Consensus 93 ~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~---~~~~~~~~~g~tpl~~A~-----~~~~~li~~~ 162 (169)
.+++++..|..|.||+|+|+..|+.+++++++++|++++... ......+..|.||||+|+ +++++||.+.
T Consensus 114 ~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~ 191 (337)
T 4g8k_A 114 KGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEM 191 (337)
T ss_dssp TTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHS
T ss_pred ccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhcc
Confidence 888999999999999999999999999999999998873111 112345677999999995 8999999754
No 99
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.90 E-value=1.6e-22 Score=127.25 Aligned_cols=114 Identities=32% Similarity=0.496 Sum_probs=104.8
Q ss_pred ChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 030904 13 DSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLE 92 (169)
Q Consensus 13 ~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~ 92 (169)
...++++.+++.|.+++.. +..+.||||+|+..|+.+++++|++. +++++.++..|.||||+|+..++.+++++|++
T Consensus 13 ~~~~~v~~Ll~~~~~~~~~--~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~ 89 (126)
T 1n0r_A 13 GHLEVVKLLLEAGADVNAK--DKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89 (126)
T ss_dssp TCHHHHHHHHHHTCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHcCCCCCCc--CCCCCcHHHHHHHcCcHHHHHHHHHc-CCCCcccCCCCCcHHHHHHHcChHHHHHHHHH
Confidence 3456788888888887654 55788999999999999999999998 99999999999999999999999999999999
Q ss_pred cCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCC
Q 030904 93 RGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASG 129 (169)
Q Consensus 93 ~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~ 129 (169)
+|++++.++..|.||||+|+..++.+++++|+++|++
T Consensus 90 ~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 90 AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred cCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999875
No 100
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.89 E-value=1.5e-22 Score=154.90 Aligned_cols=117 Identities=25% Similarity=0.317 Sum_probs=105.2
Q ss_pred ChHHHHHHHHhcCCCCccc----CCCcchhHHHHHHHH---cCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHH
Q 030904 13 DSEEDNALFEEDGVNMDLE----SETPPHLRDLAAAAQ---LGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLP 85 (169)
Q Consensus 13 ~~~~~~~~l~~~g~~~~~~----~~~~~~~t~l~~a~~---~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~ 85 (169)
.....++.+++.|++++.. ..+..|.||||+|+. .|+.+++++|++. |+++|.+|..|+||||+|+..|+.+
T Consensus 143 g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~-ga~vn~~d~~g~TpLh~A~~~g~~~ 221 (497)
T 3lvq_E 143 RDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN-GGHLDAKAADGNTALHYAALYNQPD 221 (497)
T ss_dssp TCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHH-SCCTTCCCSSSCCHHHHHTTTTCHH
T ss_pred cCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHc-CCCCCccCCCCCcHHHHHHHcCCHH
Confidence 3455677788889988754 236688999999976 8999999999998 9999999999999999999999999
Q ss_pred HHHHHHHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCc
Q 030904 86 CVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGT 130 (169)
Q Consensus 86 ~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~ 130 (169)
++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+++
T Consensus 222 ~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~ 266 (497)
T 3lvq_E 222 CLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGT 266 (497)
T ss_dssp HHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC--
T ss_pred HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999999999999998
No 101
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.89 E-value=6.4e-23 Score=138.23 Aligned_cols=114 Identities=14% Similarity=0.187 Sum_probs=101.6
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHhCCCCCcccC-CCCCcHHHHHHhcCCH----HHHHHHHHcCCCCCccCCCCCChHHHH
Q 030904 37 HLRDLAAAAQLGDVHSLRLALDNLSGSIDEPV-EDGDTALHLTCLYGYL----PCVQLLLERGASLEAKDEDGAIPLHDA 111 (169)
Q Consensus 37 ~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~-~~g~~~L~~a~~~~~~----~~~~~ll~~g~~~~~~~~~~~t~l~~a 111 (169)
++++|+.|+..|+.+.++.++.. +. +.++ ..|+||||+|+..++. +++++|++.|++++.+|..|+||||+|
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~-~~--~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a 82 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEK-GY--EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPL 82 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHH-SS--SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhc-Cc--ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Confidence 45789999999999999999987 53 4444 6799999999999875 489999999999999999999999999
Q ss_pred HhcCh------HHHHHHHHhcCCCchhhhhhhhcccCCCC-Ccccchhh----------HHHHhhh
Q 030904 112 CAGGF------IEIVQLLINSASGTECVKRMLETVDAEGD-TDCDDQND----------LVSLFIM 160 (169)
Q Consensus 112 ~~~~~------~~~~~~ll~~~~~~~~~~~~~~~~~~~g~-tpl~~A~~----------~~~~li~ 160 (169)
+..++ .+++++|+++|+++ +.+|..|+ ||||+|+. ++++|++
T Consensus 83 ~~~~~~~~~~~~~iv~~Ll~~Gadi-------n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~ 141 (186)
T 3t8k_A 83 FQGGGNDITGTTELCKIFLEKGADI-------TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFS 141 (186)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCCS-------SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHT
T ss_pred HHcCCcchhhHHHHHHHHHHCCCCC-------CccCCCcCchHHHHHHHcCCChhhHHHHHHHHHH
Confidence 99886 67899999999998 89999999 99999964 8899998
No 102
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.89 E-value=4e-22 Score=142.16 Aligned_cols=114 Identities=31% Similarity=0.419 Sum_probs=102.9
Q ss_pred HHHHHHHhcCCCCc----ccCCCcchhHHHHHHHHc---CCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHH
Q 030904 16 EDNALFEEDGVNMD----LESETPPHLRDLAAAAQL---GDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ 88 (169)
Q Consensus 16 ~~~~~l~~~g~~~~----~~~~~~~~~t~l~~a~~~---g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~ 88 (169)
..+..++..|.+++ +...+..|.||||+|+.. |+.+++++|++. |++++.+|..|.||||+|+..|+.++++
T Consensus 144 ~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~-ga~in~~d~~g~TpLh~A~~~g~~~~v~ 222 (278)
T 1dcq_A 144 FGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN-SGNLDKQTGKGSTALHYCCLTDNAECLK 222 (278)
T ss_dssp HHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH-CSCTTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHC-CCCccccCCCCCCHHHHHHHcCCHHHHH
Confidence 34455677788765 344567799999999999 899999999999 9999999999999999999999999999
Q ss_pred HHHHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCc
Q 030904 89 LLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGT 130 (169)
Q Consensus 89 ~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~ 130 (169)
+|+++|++++.+|..|.||||+|+..|+.+++++|+++|++.
T Consensus 223 ~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 223 LLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR 264 (278)
T ss_dssp HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred HHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999998764
No 103
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.88 E-value=4.3e-22 Score=146.91 Aligned_cols=135 Identities=22% Similarity=0.213 Sum_probs=107.3
Q ss_pred ChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 030904 13 DSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLE 92 (169)
Q Consensus 13 ~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~ 92 (169)
....+++.+++.|++++.......+.||||+|+..|+.+++++|++. |++++.+|..|.||||+|+..++.+++++|++
T Consensus 211 g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~-Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~ 289 (368)
T 3jue_A 211 PSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQN-GANVNQADSAGRGPLHHATILGHTGLACLFLK 289 (368)
T ss_dssp CCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence 56678888889999998766557889999999999999999999998 99999999999999999999999999999999
Q ss_pred cCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh
Q 030904 93 RGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN 152 (169)
Q Consensus 93 ~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~ 152 (169)
+|++++.+|..|.||||+|+..++.+++++|+..+..... ....+..+.|+++.+.
T Consensus 290 ~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~----~~~~~~~~~t~l~i~~ 345 (368)
T 3jue_A 290 RGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAE----AAQGQAGDETYLDIFR 345 (368)
T ss_dssp TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC------------------------
T ss_pred CcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccc----ccccCCCCCCHHHHHH
Confidence 9999999999999999999999999999999987644310 1345677888888774
No 104
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.88 E-value=3.1e-22 Score=120.11 Aligned_cols=87 Identities=37% Similarity=0.593 Sum_probs=81.1
Q ss_pred CCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCccc
Q 030904 70 DGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCD 149 (169)
Q Consensus 70 ~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~ 149 (169)
.|+||||+|+..++.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|+||||
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-------~~~d~~g~t~l~ 73 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-------NAKDKNGRTPLH 73 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-------TCCCTTSCCHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-------CccCCCCCCHHH
Confidence 4789999999999999999999999999999999999999999999999999999999998 799999999999
Q ss_pred chh-----hHHHHhhhccc
Q 030904 150 DQN-----DLVSLFIMQQE 163 (169)
Q Consensus 150 ~A~-----~~~~~li~~~~ 163 (169)
+|+ +++++|++.|.
T Consensus 74 ~A~~~~~~~~~~~Ll~~ga 92 (93)
T 1n0q_A 74 LAARNGHLEVVKLLLEAGA 92 (93)
T ss_dssp HHHHTTCHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHcCC
Confidence 995 99999998763
No 105
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.86 E-value=5.7e-22 Score=136.73 Aligned_cols=115 Identities=17% Similarity=0.170 Sum_probs=98.4
Q ss_pred hHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHc
Q 030904 14 SEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLER 93 (169)
Q Consensus 14 ~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~ 93 (169)
...+++.+++.|++++.. +..|.||||+|+..|+.+++++|++..+++++.++..|.||||+|+..++.+++++|+++
T Consensus 85 ~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ 162 (222)
T 3ehr_A 85 NLSWLRECLDNRVGVNGL--DKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAK 162 (222)
T ss_dssp CHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred cHHHHHHHHhCCCCcccc--CCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 456788888889887644 567889999999999999999999877899999999999999999999999999999999
Q ss_pred CCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCc
Q 030904 94 GASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGT 130 (169)
Q Consensus 94 g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~ 130 (169)
|++++.+|..|.||||+|+..++.++++.+++.++..
T Consensus 163 ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~ 199 (222)
T 3ehr_A 163 GARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVR 199 (222)
T ss_dssp TCCSCCCCTTSCCHHHHCCSHHHHHHHC---------
T ss_pred CCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhh
Confidence 9999999999999999999999999999999998876
No 106
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.85 E-value=3.3e-21 Score=121.26 Aligned_cols=105 Identities=21% Similarity=0.296 Sum_probs=92.6
Q ss_pred CChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHH
Q 030904 12 DDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLL 91 (169)
Q Consensus 12 ~~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll 91 (169)
.....+++.+++.|.+++. .+..|.||||+|+..|+.+++++|++. +++++.++..|+||||+|+..++.+++++|+
T Consensus 17 ~~~~~~v~~ll~~~~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll 93 (123)
T 3aaa_C 17 NGDLDEVKDYVAKGEDVNR--TLEGGRKPLHYAADCGQLEILEFLLLK-GADINAPDKHHITPLLSAVYEGHVSCVKLLL 93 (123)
T ss_dssp TTCHHHHHHHHHTTCCTTS--CCTTSSCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred cCCHHHHHHHHHcCCCcCc--cCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 3456678888888888764 456788999999999999999999988 9999999999999999999999999999999
Q ss_pred HcCCCCCccCCCCCChHHHHHhcChHHH
Q 030904 92 ERGASLEAKDEDGAIPLHDACAGGFIEI 119 (169)
Q Consensus 92 ~~g~~~~~~~~~~~t~l~~a~~~~~~~~ 119 (169)
++|++++.+|..|.||+|+|...+..++
T Consensus 94 ~~ga~~~~~~~~g~t~l~~A~~~~~~~l 121 (123)
T 3aaa_C 94 SKGADKTVKGPDGLTAFEATDNQAIKAL 121 (123)
T ss_dssp HTTCCTTCCCTTSCCHHHHCCCHHHHHH
T ss_pred HcCCCCCCcCCCCCCHHHHhCCHHHHHH
Confidence 9999999999999999999965544444
No 107
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.85 E-value=1.7e-20 Score=115.95 Aligned_cols=91 Identities=27% Similarity=0.407 Sum_probs=84.5
Q ss_pred CCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHH
Q 030904 32 SETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDA 111 (169)
Q Consensus 32 ~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a 111 (169)
..+..+.|+||+|+..|+.+++++|++. +++++.++..|.||||+|+..++.+++++|+++|++++.+|..|.||||+|
T Consensus 19 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A 97 (110)
T 2zgd_A 19 HMGSDLGKKLLEAARAGQDDEVRILMAN-GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDIS 97 (110)
T ss_dssp ---CCHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred ccCCccchHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHH
Confidence 3466788999999999999999999988 999999999999999999999999999999999999999999999999999
Q ss_pred HhcChHHHHHHH
Q 030904 112 CAGGFIEIVQLL 123 (169)
Q Consensus 112 ~~~~~~~~~~~l 123 (169)
+..|+.+++++|
T Consensus 98 ~~~~~~~~~~~L 109 (110)
T 2zgd_A 98 IDNGNEDLAEIL 109 (110)
T ss_dssp HHHTCHHHHHHH
T ss_pred HHcCCHHHHHHh
Confidence 999999999876
No 108
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.85 E-value=1.4e-21 Score=125.11 Aligned_cols=113 Identities=19% Similarity=0.228 Sum_probs=98.9
Q ss_pred ChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 030904 13 DSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLE 92 (169)
Q Consensus 13 ~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~ 92 (169)
....+++++++.|.+++.. +..|.||||+|+..|+.+++++|++. +++++.++..|.||||+|+..++.+++++|++
T Consensus 21 ~~~~~~~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 97 (137)
T 3c5r_A 21 GDIPSVEYLLQNGSDPNVK--DHAGWTPLHEACNHGHLKVVELLLQH-KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLS 97 (137)
T ss_dssp TCHHHHHHHHHTTCCSCCC--CTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCcC--CCCCCCHHHHHHHcCCHHHHHHHHHc-CCcccCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 3456788888989888754 55788999999999999999999998 99999999999999999999999999999999
Q ss_pred cCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCC
Q 030904 93 RGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 128 (169)
Q Consensus 93 ~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~ 128 (169)
.|++++.+|..|.||+++|+..+..++++++.+.+.
T Consensus 98 ~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~ 133 (137)
T 3c5r_A 98 YGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNES 133 (137)
T ss_dssp TTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred cCCCCCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence 999999999999999999999998888887766543
No 109
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.83 E-value=7.4e-20 Score=122.69 Aligned_cols=120 Identities=23% Similarity=0.215 Sum_probs=100.8
Q ss_pred hHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccC-CCCCcHHHHHHhcCCHHHHHHHHH
Q 030904 14 SEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPV-EDGDTALHLTCLYGYLPCVQLLLE 92 (169)
Q Consensus 14 ~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~-~~g~~~L~~a~~~~~~~~~~~ll~ 92 (169)
...+++.+++ |.+++. .+..|.||||+|+..|+.+++++|++. |++++.++ ..|+||||+|+..++.+++++|++
T Consensus 56 ~~~~v~~Ll~-~~~~~~--~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~ 131 (183)
T 3deo_A 56 DEQALSQLLE-DRDVDA--VDENGRTALLFVAGLGSDKCVRLLAEA-GADLDHRDMRGGLTALHMAAGYVRPEVVEALVE 131 (183)
T ss_dssp CHHHHHHHTT-TSCTTC--CCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHh-cCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHH
Confidence 4556777777 777764 456888999999999999999999998 99999888 889999999999999999999999
Q ss_pred cCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhc
Q 030904 93 RGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQ 161 (169)
Q Consensus 93 ~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~ 161 (169)
+|++++.+|..|.||||+|++.++. ..+.+|+++|+ +++++|.++
T Consensus 132 ~ga~~~~~d~~g~tpl~~A~~~~~~------------------------~~~~~~l~~a~~~~~~~i~~~L~~~ 181 (183)
T 3deo_A 132 LGADIEVEDERGLTALELAREILKT------------------------TPKGNPMQFGRRIGLEKVINVLEGQ 181 (183)
T ss_dssp HTCCTTCCCTTSCCHHHHHHHHHHT------------------------CCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred cCCCCcCCCCCCCCHHHHHHHhccC------------------------cccccHHHHHHHcCHHHHHHHHHHh
Confidence 9999999999999999999863222 33567888874 667776553
No 110
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.83 E-value=6e-20 Score=128.53 Aligned_cols=96 Identities=28% Similarity=0.310 Sum_probs=86.3
Q ss_pred ChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccC-CCCCcHHHHHHhcCCHHHHHHHH
Q 030904 13 DSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPV-EDGDTALHLTCLYGYLPCVQLLL 91 (169)
Q Consensus 13 ~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~-~~g~~~L~~a~~~~~~~~~~~ll 91 (169)
....+++.+++ |.+++. .+..|.||||+|+..|+.+++++|++. |++++.++ ..|+||||+|+..++.+++++|+
T Consensus 56 g~~~~v~~Ll~-~~~~~~--~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 131 (244)
T 3ui2_A 56 ADEQALSQLLE-DRDVDA--VDENGRTALLFVAGLGSDKCVRLLAEA-GADLDHRDMRGGLTALHMAAGYVRPEVVEALV 131 (244)
T ss_dssp TCHHHHHHTTT-TCCTTC--BCTTSCBHHHHHHHHTCHHHHHHHHHT-TCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHc-CCCCCC--cCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 34557777777 777765 456789999999999999999999998 99999888 88999999999999999999999
Q ss_pred HcCCCCCccCCCCCChHHHHH
Q 030904 92 ERGASLEAKDEDGAIPLHDAC 112 (169)
Q Consensus 92 ~~g~~~~~~~~~~~t~l~~a~ 112 (169)
++|++++.+|..|.||||+|+
T Consensus 132 ~~ga~~~~~d~~g~t~l~~A~ 152 (244)
T 3ui2_A 132 ELGADIEVEDERGLTALELAR 152 (244)
T ss_dssp HTTCCTTCCCTTCCCHHHHHH
T ss_pred HCCCCCCCCCCCCCcHHHHHH
Confidence 999999999999999999987
No 111
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.83 E-value=5.1e-22 Score=146.94 Aligned_cols=117 Identities=16% Similarity=0.061 Sum_probs=80.4
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHhCCCCC---cccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCC---CccCCCCCChHHH
Q 030904 37 HLRDLAAAAQLGDVHSLRLALDNLSGSI---DEPVEDGDTALHLTCLYGYLPCVQLLLERGASL---EAKDEDGAIPLHD 110 (169)
Q Consensus 37 ~~t~l~~a~~~g~~~~~~~ll~~~~~~~---~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~---~~~~~~~~t~l~~ 110 (169)
+.||||+|+..|+.+++++|++. ++.. +..+..|.||||+|+..|+.+++++|++.|+++ +..+.+ .||||+
T Consensus 92 ~~T~Lh~Aa~~G~~e~v~~Ll~~-ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~ 169 (376)
T 2aja_A 92 SEVICFVAAITGCSSALDTLCLL-LTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRL 169 (376)
T ss_dssp HHHHHHHHHHHCCHHHHHHHTTC---CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHH
T ss_pred cCCHHHHHHHcCCHHHHHHHHHc-CCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHH
Confidence 45788888888888888888876 5411 122345667888888888888888888888642 222222 788888
Q ss_pred HHhcChHHHHHHHHhcCCCchhhhhhhhc--ccCCCCCcccchh------hHHHHhhhcc
Q 030904 111 ACAGGFIEIVQLLINSASGTECVKRMLET--VDAEGDTDCDDQN------DLVSLFIMQQ 162 (169)
Q Consensus 111 a~~~~~~~~~~~ll~~~~~~~~~~~~~~~--~~~~g~tpl~~A~------~~~~~li~~~ 162 (169)
|+..|+.+++++|+++|+++ +. +|..|.||||+|+ +++++|++.+
T Consensus 170 Aa~~G~~eiv~~Ll~~ga~~-------~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~g 222 (376)
T 2aja_A 170 AAENGHLHVLNRLCELAPTE-------ATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP 222 (376)
T ss_dssp HHHTTCHHHHHHHHHSCGGG-------HHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSH
T ss_pred HHHCCCHHHHHHHHHcCCcc-------chhccCCCCCCHHHHHHHHCCCHHHHHHHHhCC
Confidence 88888888888888887775 33 5667778888776 6777777643
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.82 E-value=4.2e-20 Score=114.83 Aligned_cols=90 Identities=31% Similarity=0.456 Sum_probs=84.6
Q ss_pred ccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCC
Q 030904 66 EPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGD 145 (169)
Q Consensus 66 ~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~ 145 (169)
.+|..|.||||+|+..++.+++++|++.|++++.+|..|.||||+|+..++.+++++|++.|+++ +.+|..|.
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-------~~~d~~g~ 76 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV-------NARSKDGN 76 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT-------TCCCTTCC
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-------cccCCCCC
Confidence 45788999999999999999999999999999999999999999999999999999999999997 78999999
Q ss_pred Ccccchh-----hHHHHhhhcc
Q 030904 146 TDCDDQN-----DLVSLFIMQQ 162 (169)
Q Consensus 146 tpl~~A~-----~~~~~li~~~ 162 (169)
||||+|+ +++++|++.|
T Consensus 77 tpl~~A~~~~~~~~~~~Ll~~g 98 (115)
T 2l6b_A 77 TPEHLAKKNGHHEIVKLLDAKG 98 (115)
T ss_dssp CTTHHHHTTTCHHHHHHHHTTS
T ss_pred CHHHHHHHCCCHHHHHHHHHcC
Confidence 9999995 8999999853
No 113
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.81 E-value=1.9e-21 Score=143.83 Aligned_cols=134 Identities=11% Similarity=0.052 Sum_probs=107.8
Q ss_pred ChHHHHHHHHhcCCCCcc-cCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCC---CcccCCCCCcHHHHHHhcCCHHHHH
Q 030904 13 DSEEDNALFEEDGVNMDL-ESETPPHLRDLAAAAQLGDVHSLRLALDNLSGS---IDEPVEDGDTALHLTCLYGYLPCVQ 88 (169)
Q Consensus 13 ~~~~~~~~l~~~g~~~~~-~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~---~~~~~~~g~~~L~~a~~~~~~~~~~ 88 (169)
+..++++++++.|..... ...+..+.||||+|+..|+.+++++|++. |++ .+..+.. .||||+|+..|+.++++
T Consensus 103 G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~-gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~ 180 (376)
T 2aja_A 103 GCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCEL-APTEIMAMIQAEN-YHAFRLAAENGHLHVLN 180 (376)
T ss_dssp CCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHS-CTTTHHHHHSHHH-HHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhC-CCCccccccCCCC-CCHHHHHHHCCCHHHHH
Confidence 445678888888773321 23355788999999999999999999998 764 2222223 89999999999999999
Q ss_pred HHHHcCCCCCc--cCCCCCChHHHHH-hcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhh
Q 030904 89 LLLERGASLEA--KDEDGAIPLHDAC-AGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIM 160 (169)
Q Consensus 89 ~ll~~g~~~~~--~~~~~~t~l~~a~-~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~ 160 (169)
+|+++|++++. .|..|.||||+|+ ..|+.+++++|++.|. .|.||++.|+ +++++|++
T Consensus 181 ~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga--------------~~~taL~~Aa~~g~~evv~lL~~ 246 (376)
T 2aja_A 181 RLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV--------------MLAYAEIHEFEYGEKYVNPFIAR 246 (376)
T ss_dssp HHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH--------------HHHHHHHCTTTTTTTTHHHHHHH
T ss_pred HHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC--------------ccchHHHHHHHCCCHHHHHHHHh
Confidence 99999999877 8888999999999 9999999999998652 2689999995 89999998
Q ss_pred cc
Q 030904 161 QQ 162 (169)
Q Consensus 161 ~~ 162 (169)
.+
T Consensus 247 ~g 248 (376)
T 2aja_A 247 HV 248 (376)
T ss_dssp HH
T ss_pred cC
Confidence 64
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.79 E-value=2.4e-19 Score=110.72 Aligned_cols=88 Identities=30% Similarity=0.393 Sum_probs=77.9
Q ss_pred CcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCC
Q 030904 64 IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAE 143 (169)
Q Consensus 64 ~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~ 143 (169)
....+..|.|+||+|+..++.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..
T Consensus 17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~-------~~~d~~ 89 (110)
T 2zgd_A 17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV-------XAQDKF 89 (110)
T ss_dssp -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-------TCCCTT
T ss_pred ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-------cccccC
Confidence 3345678999999999999999999999999999999999999999999999999999999999997 789999
Q ss_pred CCCcccchh-----hHHHHh
Q 030904 144 GDTDCDDQN-----DLVSLF 158 (169)
Q Consensus 144 g~tpl~~A~-----~~~~~l 158 (169)
|.||||+|+ +++++|
T Consensus 90 g~tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 90 GKTAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp SCCHHHHHHHHTCHHHHHHH
T ss_pred CCcHHHHHHHcCCHHHHHHh
Confidence 999999996 566554
No 115
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=53.49 E-value=12 Score=17.53 Aligned_cols=18 Identities=39% Similarity=0.434 Sum_probs=14.4
Q ss_pred HHHHHHcCCHHHHHHHHH
Q 030904 41 LAAAAQLGDVHSLRLALD 58 (169)
Q Consensus 41 l~~a~~~g~~~~~~~ll~ 58 (169)
+..||..|+++.++.|=.
T Consensus 17 iyvA~seGd~etv~~Le~ 34 (40)
T 1gp8_A 17 MDAAASKGDVETYRKLKA 34 (40)
T ss_dssp HHHHHTTSCHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHH
Confidence 677999999998887643
No 116
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=42.86 E-value=92 Score=23.41 Aligned_cols=47 Identities=21% Similarity=0.322 Sum_probs=29.0
Q ss_pred HHcCCHHHHHHHHHhCCCCCccc--------------CCCCCcHHHHHHhcCCHHHHHHHHH
Q 030904 45 AQLGDVHSLRLALDNLSGSIDEP--------------VEDGDTALHLTCLYGYLPCVQLLLE 92 (169)
Q Consensus 45 ~~~g~~~~~~~ll~~~~~~~~~~--------------~~~g~~~L~~a~~~~~~~~~~~ll~ 92 (169)
+..|+...++..+.. |.+++.+ -..|.|.+|+|+++.+.+++..|+.
T Consensus 30 v~e~~~~~ve~y~~~-gg~~~r~lt~~e~~lln~~~af~~g~tlvhlair~~r~~~l~~ll~ 90 (454)
T 3zrh_A 30 VVEGDLAAIEAYKSS-GGDIARQLTADEVRLLNRPSAFDVGYTLVHLAIRFQRQDMLAILLT 90 (454)
T ss_dssp HHHTCHHHHHHHHTT-TCCTTCCCCHHHHHHHCCTTTCCTTCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHcCChhHHHHHHhc-CCchhcccCHHHHHHhCCCcccccCchhhhhhhhhhhhhHHHHhhh
Confidence 357999999999987 4444321 1235566666666666665555554
Done!