Your job contains 1 sequence.
>030905
MAEVQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVG
EDGRTKAVDVEAASRSRRFGSRGGRSGGFYGGRGRGGGYGRGGRGGRSVGSGGGAGSGAC
FNCGRTGHIARECYSRGRGGGRGYGGGRGGGGCYNCGEEGHFARDCPNY
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 030905
(169 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2047092 - symbol:GRP2B "glycine-rich protein 2... 235 2.5e-26 3
TAIR|locus:2827810 - symbol:CSP3 "cold shock domain prote... 226 4.1e-26 3
TAIR|locus:2121219 - symbol:GRP2 "AT4G38680" species:3702... 231 1.3e-25 3
TAIR|locus:2135139 - symbol:CSDP1 "cold shock domain prot... 221 1.7e-25 3
UNIPROTKB|Q61CX7 - symbol:lin-28 "Protein lin-28" species... 157 4.8e-16 3
TIGR_CMR|SPO_3625 - symbol:SPO_3625 "cold shock protein C... 196 1.3e-15 1
WB|WBGene00003014 - symbol:lin-28 species:6239 "Caenorhab... 150 2.0e-15 3
UNIPROTKB|P92186 - symbol:lin-28 "Protein lin-28" species... 150 2.0e-15 3
UNIPROTKB|P0A978 - symbol:cspG species:83333 "Escherichia... 193 2.6e-15 1
UNIPROTKB|Q9KN00 - symbol:cspA "Cold shock-like protein C... 193 2.6e-15 1
TIGR_CMR|VC_A0166 - symbol:VC_A0166 "cold shock transcrip... 193 2.6e-15 1
UNIPROTKB|Q48JS5 - symbol:capA "Cold shock protein CapA" ... 192 3.3e-15 1
UNIPROTKB|P63848 - symbol:cspA "Probable cold shock prote... 190 5.4e-15 1
UNIPROTKB|P0A968 - symbol:cspD species:83333 "Escherichia... 188 8.8e-15 1
TIGR_CMR|SO_2628 - symbol:SO_2628 "stress response protei... 188 8.8e-15 1
TIGR_CMR|SPO_0437 - symbol:SPO_0437 "cold shock family pr... 187 1.1e-14 1
UNIPROTKB|P91599 - symbol:lin-28 "Protein lin-28" species... 142 1.3e-14 3
UNIPROTKB|P0A972 - symbol:cspE species:83333 "Escherichia... 186 1.4e-14 1
UNIPROTKB|P0A9Y6 - symbol:cspC species:83333 "Escherichia... 186 1.4e-14 1
TIGR_CMR|CPS_0718 - symbol:CPS_0718 "cold-shock DNA-bindi... 184 2.3e-14 1
TIGR_CMR|SO_1648 - symbol:SO_1648 "cold shock domain fami... 183 3.0e-14 1
UNIPROTKB|Q9KL16 - symbol:cspV "Cold shock protein CspV" ... 182 3.8e-14 1
TIGR_CMR|VC_A0933 - symbol:VC_A0933 "cold shock domain fa... 182 3.8e-14 1
TIGR_CMR|SPO_1275 - symbol:SPO_1275 "cold shock family pr... 181 4.9e-14 1
UNIPROTKB|P0A9X9 - symbol:cspA species:83333 "Escherichia... 180 6.2e-14 1
UNIPROTKB|P36995 - symbol:cspB species:83333 "Escherichia... 179 7.9e-14 1
UNIPROTKB|P0A986 - symbol:cspI species:83333 "Escherichia... 177 1.3e-13 1
FB|FBgn0035626 - symbol:lin-28 "lin-28" species:7227 "Dro... 149 1.6e-13 2
TIGR_CMR|BA_3594 - symbol:BA_3594 "cold shock protein Csp... 174 2.7e-13 1
TIGR_CMR|CPS_2895 - symbol:CPS_2895 "cold shock-like prot... 173 3.4e-13 1
TIGR_CMR|CHY_0157 - symbol:CHY_0157 "cold shock protein C... 169 9.1e-13 1
UNIPROTKB|Q9KMY2 - symbol:VC_A0184 "Cold shock DNA-bindin... 165 2.4e-12 1
TIGR_CMR|VC_A0184 - symbol:VC_A0184 "cold shock DNA-bindi... 165 2.4e-12 1
TIGR_CMR|BA_5115 - symbol:BA_5115 "cold shock protein Csp... 163 3.9e-12 1
UNIPROTKB|Q47VJ5 - symbol:CPS_4529 "Cold-shock DNA-bindin... 162 5.0e-12 1
TIGR_CMR|CHY_0155 - symbol:CHY_0155 "cold shock protein C... 162 5.0e-12 1
TIGR_CMR|CPS_4529 - symbol:CPS_4529 "cold shock protein c... 162 5.0e-12 1
TIGR_CMR|SO_2787 - symbol:SO_2787 "cold shock domain fami... 162 5.0e-12 1
TIGR_CMR|BA_5424 - symbol:BA_5424 "cold shock protein Csp... 161 6.4e-12 1
TIGR_CMR|BA_2422 - symbol:BA_2422 "cold shock protein Csp... 160 8.2e-12 1
UNIPROTKB|Q9KSW4 - symbol:cspD "Cold shock-like protein C... 158 1.3e-11 1
TIGR_CMR|GSU_0581 - symbol:GSU_0581 "cold-shock domain fa... 158 1.3e-11 1
TIGR_CMR|VC_1142 - symbol:VC_1142 "cold shock-like protei... 158 1.3e-11 1
TIGR_CMR|GSU_1905 - symbol:GSU_1905 "cold shock domain fa... 156 2.2e-11 1
UNIPROTKB|Q5EB47 - symbol:lin28a "Protein lin-28 homolog ... 128 3.9e-11 2
UNIPROTKB|Q8JHC4 - symbol:lin28a "Protein lin-28 homolog ... 128 3.9e-11 2
ZFIN|ZDB-GENE-040426-747 - symbol:lin28a "lin-28 homolog ... 124 3.9e-11 2
TIGR_CMR|GSU_0207 - symbol:GSU_0207 "cold-shock domain fa... 152 5.8e-11 1
UNIPROTKB|F1NS05 - symbol:LIN28A "Protein lin-28 homolog ... 126 6.3e-11 2
UNIPROTKB|Q45KJ5 - symbol:LIN28A "Protein lin-28 homolog ... 126 6.3e-11 2
UNIPROTKB|Q6ZN17 - symbol:LIN28B "Protein lin-28 homolog ... 132 6.6e-11 2
UNIPROTKB|D4A0Q1 - symbol:Lin28b "Protein Lin28b" species... 131 7.9e-11 2
UNIPROTKB|F1NQ33 - symbol:F1NQ33 "Uncharacterized protein... 150 9.4e-11 1
UNIPROTKB|J9NV99 - symbol:CSDA "Uncharacterized protein" ... 150 9.4e-11 1
TIGR_CMR|BA_1629 - symbol:BA_1629 "cold shock protein Csp... 150 9.4e-11 1
TIGR_CMR|GSU_0191 - symbol:GSU_0191 "cold-shock domain fa... 150 9.4e-11 1
TIGR_CMR|CPS_0737 - symbol:CPS_0737 "cold-shock DNA-bindi... 148 1.5e-10 1
UNIPROTKB|F1NKY2 - symbol:YBX1 "Nuclease-sensitive elemen... 150 1.8e-10 1
UNIPROTKB|F1NFC0 - symbol:YBX1 "Nuclease-sensitive elemen... 150 1.9e-10 1
UNIPROTKB|F1LXN5 - symbol:Csda "DNA-binding protein A" sp... 150 1.9e-10 1
UNIPROTKB|P45441 - symbol:ybx2-b "Y-box-binding protein 2... 152 2.0e-10 1
UNIPROTKB|F1LTA0 - symbol:F1LTA0 "Uncharacterized protein... 147 2.1e-10 1
ZFIN|ZDB-GENE-000629-3 - symbol:ybx1 "Y box binding prote... 151 2.3e-10 1
UNIPROTKB|F1PF53 - symbol:F1PF53 "Uncharacterized protein... 146 2.5e-10 1
UNIPROTKB|F1PF55 - symbol:F1PF55 "Uncharacterized protein... 146 2.5e-10 1
TIGR_CMR|BA_1135 - symbol:BA_1135 "cold shock protein Csp... 146 2.5e-10 1
UNIPROTKB|P21573 - symbol:ybx1 "Nuclease-sensitive elemen... 150 2.8e-10 1
UNIPROTKB|D4A0L4 - symbol:Csda "DNA-binding protein A" sp... 150 2.9e-10 1
UNIPROTKB|D4AAT9 - symbol:Csda "DNA-binding protein A" sp... 150 2.9e-10 1
UNIPROTKB|F1SQ46 - symbol:CSDA "Uncharacterized protein" ... 150 3.0e-10 1
UNIPROTKB|J9NTE1 - symbol:CSDA "Uncharacterized protein" ... 150 3.1e-10 1
UNIPROTKB|Q06066 - symbol:YBX1 "Nuclease-sensitive elemen... 150 3.3e-10 1
MGI|MGI:99146 - symbol:Ybx1 "Y box protein 1" species:100... 150 3.3e-10 1
RGD|61843 - symbol:Ybx1 "Y box binding protein 1" species... 150 3.3e-10 1
RGD|6486912 - symbol:LOC100912427 "nuclease-sensitive ele... 150 3.3e-10 1
UNIPROTKB|F1MZ92 - symbol:YBX1 "Nuclease-sensitive elemen... 150 3.4e-10 1
UNIPROTKB|P67808 - symbol:YBX1 "Nuclease-sensitive elemen... 150 3.4e-10 1
UNIPROTKB|P67809 - symbol:YBX1 "Nuclease-sensitive elemen... 150 3.4e-10 1
UNIPROTKB|Q28618 - symbol:YBX1 "Nuclease-sensitive elemen... 150 3.4e-10 1
UNIPROTKB|F1RYQ5 - symbol:F1RYQ5 "Uncharacterized protein... 127 3.4e-10 2
UNIPROTKB|F1P7H7 - symbol:LIN28B "Uncharacterized protein... 126 3.5e-10 2
UNIPROTKB|P21574 - symbol:ybx2-a "Y-box-binding protein 2... 150 3.7e-10 1
MGI|MGI:3584032 - symbol:Lin28b "lin-28 homolog B (C. ele... 125 4.1e-10 2
UNIPROTKB|E2R1A0 - symbol:YBX1 "Uncharacterized protein" ... 150 4.4e-10 1
MGI|MGI:1096372 - symbol:Ybx2 "Y box protein 2" species:1... 150 4.4e-10 1
MGI|MGI:2137670 - symbol:Ybx3 "Y box protein 3" species:1... 150 4.4e-10 1
RGD|621056 - symbol:Ybx3 "Y box binding protein 3" specie... 150 4.4e-10 1
UNIPROTKB|F1MA18 - symbol:Csda "DNA-binding protein A" sp... 150 4.4e-10 1
UNIPROTKB|F1M1Q9 - symbol:F1M1Q9 "Uncharacterized protein... 147 4.5e-10 1
UNIPROTKB|Q8AVK2 - symbol:lin28b "Protein lin-28 homolog ... 125 4.6e-10 2
UNIPROTKB|F1PB10 - symbol:CSDA "Uncharacterized protein" ... 150 4.7e-10 1
UNIPROTKB|P16989 - symbol:CSDA "DNA-binding protein A" sp... 150 4.7e-10 1
UNIPROTKB|A5D7Q4 - symbol:CSDA "Uncharacterized protein" ... 150 4.8e-10 1
UNIPROTKB|I3LQF8 - symbol:CSDA "Uncharacterized protein" ... 150 5.0e-10 1
UNIPROTKB|F1LY12 - symbol:F1LY12 "Uncharacterized protein... 147 5.4e-10 1
UNIPROTKB|E1BHM3 - symbol:LIN28A "Uncharacterized protein... 119 5.4e-10 2
UNIPROTKB|B1PXG0 - symbol:LIN28 "LIN28" species:9823 "Sus... 119 5.4e-10 2
UNIPROTKB|J9NTJ7 - symbol:LOC474472 "Uncharacterized prot... 148 5.6e-10 1
RGD|1305068 - symbol:Ybx2 "Y box binding protein 2" speci... 149 5.6e-10 1
UNIPROTKB|A5D7M4 - symbol:YBX2 "Uncharacterized protein" ... 149 5.7e-10 1
WARNING: Descriptions of 72 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2047092 [details] [associations]
symbol:GRP2B "glycine-rich protein 2B" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009409 "response
to cold" evidence=IEP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009790 "embryo
development" evidence=IMP] [GO:0010154 "fruit development"
evidence=IMP] InterPro:IPR001878 InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050
PROSITE:PS50158 SMART:SM00343 SMART:SM00357 Prosite:PS00352
GO:GO:0005829 GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0005730 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0009409 GO:GO:0008270 GO:GO:0003723 GO:GO:0009790
GO:GO:0010154 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:4.10.60.10 SUPFAM:SSF57756 HOGENOM:HOG000186262
InterPro:IPR019844 EMBL:AC006264 eggNOG:COG1278
ProtClustDB:CLSN2683565 EMBL:U39072 EMBL:AY057693 EMBL:BT021142
IPI:IPI00516457 PIR:F84596 RefSeq:NP_179702.1 UniGene:At.1680
ProteinModelPortal:Q38896 SMR:Q38896 PaxDb:Q38896 PRIDE:Q38896
EnsemblPlants:AT2G21060.1 GeneID:816641 KEGG:ath:AT2G21060
TAIR:At2g21060 InParanoid:Q38896 OMA:CFKCGEP PhylomeDB:Q38896
Genevestigator:Q38896 GermOnline:AT2G21060 Uniprot:Q38896
Length = 201
Score = 235 (87.8 bits), Expect = 2.5e-26, Sum P(3) = 2.5e-26
Identities = 43/70 (61%), Positives = 54/70 (77%)
Query: 1 MAEVQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVG 60
M+ R GTVKWF QKGFGFI P DGG+DLFVHQ+SI+SEGFR+L+ ++VEF V+V
Sbjct: 9 MSGGDRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVD 68
Query: 61 EDGRTKAVDV 70
GR KA++V
Sbjct: 69 NSGRPKAIEV 78
Score = 48 (22.0 bits), Expect = 2.5e-26, Sum P(3) = 2.5e-26
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 120 CFNCGRTGHIA 130
CF CG GH+A
Sbjct: 138 CFKCGEPGHMA 148
Score = 47 (21.6 bits), Expect = 3.4e-23, Sum P(2) = 3.4e-23
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 120 CFNCGRTGHIA 130
C++CG +GH A
Sbjct: 182 CYSCGESGHFA 192
Score = 38 (18.4 bits), Expect = 2.5e-26, Sum P(3) = 2.5e-26
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 161 HFARDC 166
HFARDC
Sbjct: 190 HFARDC 195
>TAIR|locus:2827810 [details] [associations]
symbol:CSP3 "cold shock domain protein 3" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEP;IMP] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0009631
"cold acclimation" evidence=IMP] [GO:0032508 "DNA duplex unwinding"
evidence=IDA] InterPro:IPR001878 InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050
PROSITE:PS50158 SMART:SM00343 SMART:SM00357 Prosite:PS00352
GO:GO:0005634 GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0009631 GO:GO:0003723 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 Gene3D:4.10.60.10 SUPFAM:SSF57756
HOGENOM:HOG000186262 KO:K09250 InterPro:IPR019844 eggNOG:COG1278
ProtClustDB:CLSN2685328 GO:GO:0032508 HSSP:O54310 EMBL:AB308041
EMBL:AY035133 EMBL:AY062985 IPI:IPI00519047 PIR:T00837
RefSeq:NP_565427.1 UniGene:At.19464 ProteinModelPortal:Q94C69
SMR:Q94C69 PaxDb:Q94C69 PRIDE:Q94C69 EnsemblPlants:AT2G17870.1
GeneID:816297 KEGG:ath:AT2G17870 TAIR:At2g17870 InParanoid:Q94C69
OMA:MEDQSAA PhylomeDB:Q94C69 Genevestigator:Q94C69 Uniprot:Q94C69
Length = 301
Score = 226 (84.6 bits), Expect = 4.1e-26, Sum P(3) = 4.1e-26
Identities = 40/67 (59%), Positives = 55/67 (82%)
Query: 6 RSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGRT 65
RS G V WFS KG+GFI P+DGGE+LFVHQ+SI S+GFR+L+ G++VE+ + +G DG+T
Sbjct: 10 RSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDGKT 69
Query: 66 KAVDVEA 72
KA++V A
Sbjct: 70 KAIEVTA 76
Score = 55 (24.4 bits), Expect = 4.1e-26, Sum P(3) = 4.1e-26
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 120 CFNCGRTGHIA 130
CFNCG GH+A
Sbjct: 96 CFNCGEVGHMA 106
Score = 50 (22.7 bits), Expect = 3.5e-25, Sum P(3) = 3.5e-25
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 120 CFNCGRTGHIA 130
C+ CG TGH+A
Sbjct: 254 CYECGGTGHLA 264
Score = 48 (22.0 bits), Expect = 2.2e-25, Sum P(3) = 2.2e-25
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 120 CFNCGRTGHIA 130
C++CG GH+A
Sbjct: 163 CYSCGEVGHLA 173
Score = 47 (21.6 bits), Expect = 7.1e-25, Sum P(3) = 7.1e-25
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 120 CFNCGRTGHIA 130
C+ CG GHIA
Sbjct: 226 CYTCGGVGHIA 236
Score = 46 (21.3 bits), Expect = 3.7e-22, Sum P(2) = 3.7e-22
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 120 CFNCGRTGHIA 130
CF CG+ GH A
Sbjct: 284 CFICGKEGHFA 294
Score = 41 (19.5 bits), Expect = 1.1e-24, Sum P(3) = 1.1e-24
Identities = 6/11 (54%), Positives = 7/11 (63%)
Query: 120 CFNCGRTGHIA 130
C+ CG GH A
Sbjct: 132 CYMCGDVGHFA 142
Score = 41 (19.5 bits), Expect = 2.9e-24, Sum P(3) = 2.9e-24
Identities = 6/11 (54%), Positives = 7/11 (63%)
Query: 120 CFNCGRTGHIA 130
C+ CG GH A
Sbjct: 198 CYMCGGVGHFA 208
Score = 38 (18.4 bits), Expect = 4.1e-26, Sum P(3) = 4.1e-26
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 161 HFARDC 166
HFARDC
Sbjct: 206 HFARDC 211
Score = 38 (18.4 bits), Expect = 4.1e-26, Sum P(3) = 4.1e-26
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 161 HFARDC 166
HFARDC
Sbjct: 140 HFARDC 145
Score = 34 (17.0 bits), Expect = 1.1e-25, Sum P(3) = 1.1e-25
Identities = 5/6 (83%), Positives = 6/6 (100%)
Query: 161 HFARDC 166
HFAR+C
Sbjct: 292 HFAREC 297
Score = 32 (16.3 bits), Expect = 1.7e-25, Sum P(3) = 1.7e-25
Identities = 5/6 (83%), Positives = 5/6 (83%)
Query: 161 HFARDC 166
H ARDC
Sbjct: 262 HLARDC 267
>TAIR|locus:2121219 [details] [associations]
symbol:GRP2 "AT4G38680" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0009409 "response to cold" evidence=IEP] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=IMP]
[GO:0048316 "seed development" evidence=IMP] [GO:0048443 "stamen
development" evidence=IMP] [GO:0009414 "response to water
deprivation" evidence=IEP] [GO:0032508 "DNA duplex unwinding"
evidence=IDA] [GO:0043457 "regulation of cellular respiration"
evidence=IMP] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0009631 "cold
acclimation" evidence=IGI] [GO:0005829 "cytosol" evidence=IDA]
[GO:0009269 "response to desiccation" evidence=IEP] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP]
InterPro:IPR001878 InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050 PROSITE:PS50158
SMART:SM00343 SMART:SM00357 Prosite:PS00352 GO:GO:0005829
GO:GO:0005886 GO:GO:0009737 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0005730 GO:GO:0006355 GO:GO:0046872 GO:GO:0008270
GO:GO:0003729 GO:GO:0009631 GO:GO:0048443 GO:GO:0048316
GO:GO:0003690 GO:GO:0003697 GO:GO:0010228 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 Gene3D:4.10.60.10 GO:GO:0009269
EMBL:AL161593 HOGENOM:HOG000186262 InterPro:IPR019844 GO:GO:0043457
eggNOG:COG1278 GO:GO:0032508 EMBL:S47408 EMBL:AL035540
EMBL:AF360202 EMBL:AF385696 EMBL:AY040049 EMBL:AY133591
EMBL:AK318762 IPI:IPI00537614 IPI:IPI00930938 PIR:JQ1061
RefSeq:NP_195580.1 UniGene:At.24348 UniGene:At.75605 HSSP:O54310
ProteinModelPortal:Q41188 SMR:Q41188 STRING:Q41188 PRIDE:Q41188
ProMEX:Q41188 EnsemblPlants:AT4G38680.1 GeneID:830024
KEGG:ath:AT4G38680 TAIR:At4g38680 InParanoid:Q41188 OMA:DCYKCGE
PhylomeDB:Q41188 ProtClustDB:CLSN2683565 Genevestigator:Q41188
Uniprot:Q41188
Length = 203
Score = 231 (86.4 bits), Expect = 1.3e-25, Sum P(3) = 1.3e-25
Identities = 40/66 (60%), Positives = 53/66 (80%)
Query: 5 QRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGR 64
+R G+VKWF QKGFGFI P+DGG+DLFVHQ+SI+SEGFR+L+ + VEF V++ + R
Sbjct: 9 ERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNNR 68
Query: 65 TKAVDV 70
KA+DV
Sbjct: 69 PKAIDV 74
Score = 47 (21.6 bits), Expect = 8.8e-23, Sum P(2) = 8.8e-23
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 120 CFNCGRTGHIA 130
C++CG +GH A
Sbjct: 185 CYSCGESGHFA 195
Score = 45 (20.9 bits), Expect = 1.3e-25, Sum P(3) = 1.3e-25
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 120 CFNCGRTGHIA 130
C+ CG GH+A
Sbjct: 131 CYKCGEPGHMA 141
Score = 38 (18.4 bits), Expect = 1.3e-25, Sum P(3) = 1.3e-25
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 161 HFARDC 166
HFARDC
Sbjct: 193 HFARDC 198
Score = 32 (16.3 bits), Expect = 3.2e-21, Sum P(2) = 3.2e-21
Identities = 5/6 (83%), Positives = 5/6 (83%)
Query: 161 HFARDC 166
H ARDC
Sbjct: 139 HMARDC 144
>TAIR|locus:2135139 [details] [associations]
symbol:CSDP1 "cold shock domain protein 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009409 "response
to cold" evidence=IGI;IEP] [GO:0003690 "double-stranded DNA
binding" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0009414
"response to water deprivation" evidence=IEP] [GO:0009651 "response
to salt stress" evidence=IEP] [GO:0010501 "RNA secondary structure
unwinding" evidence=IDA] [GO:0032508 "DNA duplex unwinding"
evidence=IDA] [GO:0009631 "cold acclimation" evidence=IGI]
[GO:0009165 "nucleotide biosynthetic process" evidence=RCA]
InterPro:IPR001878 InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050 PROSITE:PS50158
SMART:SM00343 SMART:SM00357 Prosite:PS00352 GO:GO:0005634
GO:GO:0005737 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006355
GO:GO:0046872 GO:GO:0009651 GO:GO:0009414 GO:GO:0008270
GO:GO:0009631 GO:GO:0003723 EMBL:AL161588 GO:GO:0003690
GO:GO:0003697 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:4.10.60.10 SUPFAM:SSF57756 EMBL:AL022373
HOGENOM:HOG000186262 KO:K09250 InterPro:IPR019844 GO:GO:0010501
EMBL:AK226815 IPI:IPI00525206 PIR:T05494 RefSeq:NP_195326.1
UniGene:At.23073 HSSP:P15277 ProteinModelPortal:O65639 SMR:O65639
STRING:O65639 PaxDb:O65639 PRIDE:O65639 EnsemblPlants:AT4G36020.1
GeneID:829758 KEGG:ath:AT4G36020 TAIR:At4g36020 eggNOG:COG1278
InParanoid:O65639 OMA:GRACYNC PhylomeDB:O65639
ProtClustDB:CLSN2685328 Genevestigator:O65639 GO:GO:0032508
Uniprot:O65639
Length = 299
Score = 221 (82.9 bits), Expect = 1.7e-25, Sum P(3) = 1.7e-25
Identities = 40/67 (59%), Positives = 53/67 (79%)
Query: 6 RSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGRT 65
RS+G V WF+A KG+GFI P+DG +LFVHQ+SI SEG+R+L+ G VEF++ G DG+T
Sbjct: 10 RSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKT 69
Query: 66 KAVDVEA 72
KAV+V A
Sbjct: 70 KAVNVTA 76
Score = 54 (24.1 bits), Expect = 1.7e-25, Sum P(3) = 1.7e-25
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 120 CFNCGRTGHIA 130
C+NCG TGH A
Sbjct: 134 CYNCGDTGHFA 144
Score = 51 (23.0 bits), Expect = 3.5e-25, Sum P(3) = 3.5e-25
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 120 CFNCGRTGHIA 130
C+NCG GHI+
Sbjct: 102 CYNCGELGHIS 112
Score = 48 (22.0 bits), Expect = 1.8e-24, Sum P(3) = 1.8e-24
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 120 CFNCGRTGHIA 130
C++CG GHIA
Sbjct: 232 CYSCGGVGHIA 242
Score = 46 (21.3 bits), Expect = 1.1e-24, Sum P(3) = 1.1e-24
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 120 CFNCGRTGHIA 130
C+ CG GH+A
Sbjct: 166 CYTCGDVGHVA 176
Score = 46 (21.3 bits), Expect = 2.9e-24, Sum P(3) = 2.9e-24
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 120 CFNCGRTGHIA 130
C+ CG +GH+A
Sbjct: 255 CYQCGGSGHLA 265
Score = 46 (21.3 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 120 CFNCGRTGHIA 130
C+ CG+ GH A
Sbjct: 282 CYKCGKEGHFA 292
Score = 43 (20.2 bits), Expect = 6.0e-24, Sum P(3) = 6.0e-24
Identities = 6/11 (54%), Positives = 7/11 (63%)
Query: 120 CFNCGRTGHIA 130
C+ CG GH A
Sbjct: 200 CYTCGDVGHFA 210
Score = 38 (18.4 bits), Expect = 1.7e-25, Sum P(3) = 1.7e-25
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 161 HFARDC 166
HFARDC
Sbjct: 208 HFARDC 213
Score = 38 (18.4 bits), Expect = 3.5e-25, Sum P(3) = 3.5e-25
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 161 HFARDC 166
HFARDC
Sbjct: 142 HFARDC 147
Score = 34 (17.0 bits), Expect = 4.4e-25, Sum P(3) = 4.4e-25
Identities = 5/6 (83%), Positives = 6/6 (100%)
Query: 161 HFARDC 166
HFAR+C
Sbjct: 290 HFAREC 295
Score = 32 (16.3 bits), Expect = 7.1e-25, Sum P(3) = 7.1e-25
Identities = 5/6 (83%), Positives = 5/6 (83%)
Query: 161 HFARDC 166
H ARDC
Sbjct: 263 HLARDC 268
Score = 32 (16.3 bits), Expect = 7.1e-25, Sum P(3) = 7.1e-25
Identities = 5/6 (83%), Positives = 5/6 (83%)
Query: 161 HFARDC 166
H ARDC
Sbjct: 240 HIARDC 245
Score = 31 (16.0 bits), Expect = 9.0e-25, Sum P(3) = 9.0e-25
Identities = 5/6 (83%), Positives = 5/6 (83%)
Query: 161 HFARDC 166
H ARDC
Sbjct: 174 HVARDC 179
>UNIPROTKB|Q61CX7 [details] [associations]
symbol:lin-28 "Protein lin-28" species:6238 "Caenorhabditis
briggsae" [GO:0001708 "cell fate specification" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] InterPro:IPR001878
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313
PRINTS:PR00050 PROSITE:PS50158 SMART:SM00343 SMART:SM00357
GO:GO:0007275 GO:GO:0001708 GO:GO:0005737 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 Gene3D:4.10.60.10
SUPFAM:SSF57756 EMBL:HE600940 eggNOG:COG1278 HSSP:O54310
ProteinModelPortal:Q61CX7 STRING:Q61CX7 EnsemblMetazoa:CBG12720
WormBase:CBG12720 HOGENOM:HOG000113330 Uniprot:Q61CX7
Length = 237
Score = 157 (60.3 bits), Expect = 4.8e-16, Sum P(3) = 4.8e-16
Identities = 26/61 (42%), Positives = 42/61 (68%)
Query: 6 RSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGRT 65
R G+ KWF+ KG+GF+ ++ GEDLFVHQ+++ +GFR+L EG+ V + + +G+
Sbjct: 52 RYFGSCKWFNVSKGYGFVIDDNTGEDLFVHQSNLNMQGFRSLDEGERVSYYIQERSNGKG 111
Query: 66 K 66
K
Sbjct: 112 K 112
Score = 35 (17.4 bits), Expect = 7.9e-14, Sum P(2) = 7.9e-14
Identities = 4/11 (36%), Positives = 7/11 (63%)
Query: 120 CFNCGRTGHIA 130
C+ CG H++
Sbjct: 168 CYTCGSEEHVS 178
Score = 32 (16.3 bits), Expect = 4.8e-16, Sum P(3) = 4.8e-16
Identities = 4/6 (66%), Positives = 5/6 (83%)
Query: 120 CFNCGR 125
CF CG+
Sbjct: 144 CFRCGK 149
Score = 32 (16.3 bits), Expect = 4.8e-16, Sum P(3) = 4.8e-16
Identities = 5/8 (62%), Positives = 6/8 (75%)
Query: 161 HFARDCPN 168
H A+ CPN
Sbjct: 153 HKAKGCPN 160
>TIGR_CMR|SPO_3625 [details] [associations]
symbol:SPO_3625 "cold shock protein CspA" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003677 "DNA binding" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR002059 InterPro:IPR011129 InterPro:IPR012156
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0006355 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844 KO:K03704
HOGENOM:HOG000070673 RefSeq:YP_168819.1 ProteinModelPortal:Q5LMD9
SMR:Q5LMD9 GeneID:3195668 KEGG:sil:SPO3625 PATRIC:23380729
OMA:TMDGFKT Uniprot:Q5LMD9
Length = 68
Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 33/67 (49%), Positives = 50/67 (74%)
Query: 7 SSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGRTK 66
++GTVKWF++QKGFGFIAPE G +D+FVH ++++ G + L +GQ V F ++ G DGR
Sbjct: 2 ANGTVKWFNSQKGFGFIAPEQGSKDVFVHISALERSGIQKLDDGQAVTFDIESGRDGRES 61
Query: 67 AVDVEAA 73
A+++ A
Sbjct: 62 AINLALA 68
>WB|WBGene00003014 [details] [associations]
symbol:lin-28 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0018991 "oviposition" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0040034
"regulation of development, heterochronic" evidence=IGI;IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0070883 "pre-miRNA
binding" evidence=IPI] [GO:0007549 "dosage compensation"
evidence=IGI] InterPro:IPR001878 InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050
PROSITE:PS50158 SMART:SM00343 SMART:SM00357 GO:GO:0007275
GO:GO:0001708 GO:GO:0002009 GO:GO:0005737 GO:GO:0018991
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0040034 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:4.10.60.10 SUPFAM:SSF57756 eggNOG:COG1278 HSSP:O54310
GO:GO:0070883 GO:GO:0007549 HOGENOM:HOG000113330 EMBL:U75912
EMBL:U75915 EMBL:Z81494 RefSeq:NP_001021085.1 RefSeq:NP_492281.2
UniGene:Cel.22515 ProteinModelPortal:P92186 SMR:P92186
DIP:DIP-40151N IntAct:P92186 STRING:P92186 PaxDb:P92186
PRIDE:P92186 EnsemblMetazoa:F02E9.2a GeneID:172626
KEGG:cel:CELE_F02E9.2 UCSC:F02E9.2a CTD:38639 WormBase:F02E9.2a
WormBase:F02E9.2b GeneTree:ENSGT00390000001177 InParanoid:P92186
OMA:FATHKAK NextBio:876317 Uniprot:P92186
Length = 227
Score = 150 (57.9 bits), Expect = 2.0e-15, Sum P(3) = 2.0e-15
Identities = 25/59 (42%), Positives = 40/59 (67%)
Query: 6 RSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGR 64
R G+ KWF+ KG+GF+ + GEDLFVHQ+++ +GFR+L EG+ V + + +G+
Sbjct: 52 RYFGSCKWFNVSKGYGFVIDDITGEDLFVHQSNLNMQGFRSLDEGERVSYYIQERSNGK 110
Score = 35 (17.4 bits), Expect = 4.2e-13, Sum P(2) = 4.2e-13
Identities = 4/11 (36%), Positives = 7/11 (63%)
Query: 120 CFNCGRTGHIA 130
C+ CG H++
Sbjct: 168 CYTCGSEEHVS 178
Score = 33 (16.7 bits), Expect = 2.0e-15, Sum P(3) = 2.0e-15
Identities = 5/8 (62%), Positives = 6/8 (75%)
Query: 161 HFARDCPN 168
H A+ CPN
Sbjct: 153 HKAKSCPN 160
Score = 32 (16.3 bits), Expect = 2.0e-15, Sum P(3) = 2.0e-15
Identities = 4/6 (66%), Positives = 5/6 (83%)
Query: 120 CFNCGR 125
CF CG+
Sbjct: 144 CFRCGK 149
>UNIPROTKB|P92186 [details] [associations]
symbol:lin-28 "Protein lin-28" species:6239 "Caenorhabditis
elegans" [GO:0001708 "cell fate specification" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR001878
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313
PRINTS:PR00050 PROSITE:PS50158 SMART:SM00343 SMART:SM00357
GO:GO:0007275 GO:GO:0001708 GO:GO:0002009 GO:GO:0005737
GO:GO:0018991 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0040034 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 Gene3D:4.10.60.10 SUPFAM:SSF57756 eggNOG:COG1278
HSSP:O54310 GO:GO:0070883 GO:GO:0007549 HOGENOM:HOG000113330
EMBL:U75912 EMBL:U75915 EMBL:Z81494 RefSeq:NP_001021085.1
RefSeq:NP_492281.2 UniGene:Cel.22515 ProteinModelPortal:P92186
SMR:P92186 DIP:DIP-40151N IntAct:P92186 STRING:P92186 PaxDb:P92186
PRIDE:P92186 EnsemblMetazoa:F02E9.2a GeneID:172626
KEGG:cel:CELE_F02E9.2 UCSC:F02E9.2a CTD:38639 WormBase:F02E9.2a
WormBase:F02E9.2b GeneTree:ENSGT00390000001177 InParanoid:P92186
OMA:FATHKAK NextBio:876317 Uniprot:P92186
Length = 227
Score = 150 (57.9 bits), Expect = 2.0e-15, Sum P(3) = 2.0e-15
Identities = 25/59 (42%), Positives = 40/59 (67%)
Query: 6 RSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGR 64
R G+ KWF+ KG+GF+ + GEDLFVHQ+++ +GFR+L EG+ V + + +G+
Sbjct: 52 RYFGSCKWFNVSKGYGFVIDDITGEDLFVHQSNLNMQGFRSLDEGERVSYYIQERSNGK 110
Score = 35 (17.4 bits), Expect = 4.2e-13, Sum P(2) = 4.2e-13
Identities = 4/11 (36%), Positives = 7/11 (63%)
Query: 120 CFNCGRTGHIA 130
C+ CG H++
Sbjct: 168 CYTCGSEEHVS 178
Score = 33 (16.7 bits), Expect = 2.0e-15, Sum P(3) = 2.0e-15
Identities = 5/8 (62%), Positives = 6/8 (75%)
Query: 161 HFARDCPN 168
H A+ CPN
Sbjct: 153 HKAKSCPN 160
Score = 32 (16.3 bits), Expect = 2.0e-15, Sum P(3) = 2.0e-15
Identities = 4/6 (66%), Positives = 5/6 (83%)
Query: 120 CFNCGR 125
CF CG+
Sbjct: 144 CFRCGK 149
>UNIPROTKB|P0A978 [details] [associations]
symbol:cspG species:83333 "Escherichia coli K-12"
[GO:0009409 "response to cold" evidence=IDA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006950 "response
to stress" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0009409 GO:GO:0006351
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704
OMA:AWEDEEV EMBL:D63344 EMBL:AF003591 PIR:D64840 RefSeq:NP_415510.1
RefSeq:YP_489262.1 ProteinModelPortal:P0A978 SMR:P0A978
DIP:DIP-47938N IntAct:P0A978 MINT:MINT-1247768 PRIDE:P0A978
EnsemblBacteria:EBESCT00000003528 EnsemblBacteria:EBESCT00000016965
GeneID:12931923 GeneID:945591 KEGG:ecj:Y75_p0962 KEGG:eco:b0990
PATRIC:32117205 EchoBASE:EB3993 EcoGene:EG14243
ProtClustDB:PRK09890 BioCyc:EcoCyc:G6511-MONOMER
BioCyc:ECOL316407:JW0974-MONOMER Genevestigator:P0A978
Uniprot:P0A978
Length = 70
Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
Identities = 35/62 (56%), Positives = 47/62 (75%)
Query: 6 RSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGRT 65
+ +G VKWF+A KGFGFI P+DG +D+FVH T+I+S FRTL+E Q VEFS++ G+ G
Sbjct: 4 KMTGLVKWFNADKGFGFITPDDGSKDVFVHFTAIQSNEFRTLNENQKVEFSIEQGQRGPA 63
Query: 66 KA 67
A
Sbjct: 64 AA 65
>UNIPROTKB|Q9KN00 [details] [associations]
symbol:cspA "Cold shock-like protein CspA" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 GO:GO:0009409
GO:GO:0006351 EMBL:AE003853 GenomeReviews:AE003853_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 KO:K03704 PIR:G82492
RefSeq:NP_232566.1 ProteinModelPortal:Q9KN00 SMR:Q9KN00
PRIDE:Q9KN00 DNASU:2611900 GeneID:2611900 KEGG:vch:VCA0166
PATRIC:20084905 OMA:KMRGKVS ProtClustDB:CLSK788675 Uniprot:Q9KN00
Length = 70
Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
Identities = 37/68 (54%), Positives = 52/68 (76%)
Query: 5 QRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGR 64
Q+ +G+VKWF+ KGFGFI+ ++GG+D+FVH SI SEGF+TL+EGQ V F+V+ G+ G
Sbjct: 3 QKMTGSVKWFNETKGFGFISQDNGGQDVFVHFKSIVSEGFKTLAEGQRVSFTVEQGKKG- 61
Query: 65 TKAVDVEA 72
+A V A
Sbjct: 62 PQAAQVTA 69
>TIGR_CMR|VC_A0166 [details] [associations]
symbol:VC_A0166 "cold shock transcriptional regulator
CspA" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 GO:GO:0009409
GO:GO:0006351 EMBL:AE003853 GenomeReviews:AE003853_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 KO:K03704 PIR:G82492
RefSeq:NP_232566.1 ProteinModelPortal:Q9KN00 SMR:Q9KN00
PRIDE:Q9KN00 DNASU:2611900 GeneID:2611900 KEGG:vch:VCA0166
PATRIC:20084905 OMA:KMRGKVS ProtClustDB:CLSK788675 Uniprot:Q9KN00
Length = 70
Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
Identities = 37/68 (54%), Positives = 52/68 (76%)
Query: 5 QRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGR 64
Q+ +G+VKWF+ KGFGFI+ ++GG+D+FVH SI SEGF+TL+EGQ V F+V+ G+ G
Sbjct: 3 QKMTGSVKWFNETKGFGFISQDNGGQDVFVHFKSIVSEGFKTLAEGQRVSFTVEQGKKG- 61
Query: 65 TKAVDVEA 72
+A V A
Sbjct: 62 PQAAQVTA 69
>UNIPROTKB|Q48JS5 [details] [associations]
symbol:capA "Cold shock protein CapA" species:264730
"Pseudomonas syringae pv. phaseolicola 1448A" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR002059 InterPro:IPR011129 InterPro:IPR012156
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
GO:GO:0009409 EMBL:CP000058 GenomeReviews:CP000058_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704
RefSeq:YP_274352.1 ProteinModelPortal:Q48JS5 SMR:Q48JS5
STRING:Q48JS5 GeneID:3557063 KEGG:psp:PSPPH_2133 PATRIC:19973494
OMA:GFIVPAN ProtClustDB:CLSK410037 Uniprot:Q48JS5
Length = 70
Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
Identities = 34/58 (58%), Positives = 45/58 (77%)
Query: 6 RSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDG 63
R +GTVKWF+ +KGFGFI P+ GG+DLFVH +I+S+GF++L EGQTV F G+ G
Sbjct: 4 RQTGTVKWFNDEKGFGFITPQGGGDDLFVHFKAIESDGFKSLKEGQTVSFVAAKGQKG 61
>UNIPROTKB|P63848 [details] [associations]
symbol:cspA "Probable cold shock protein A" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0040007 "growth" evidence=IMP] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005737 GO:GO:0040007 GO:GO:0005618 GO:GO:0006355
EMBL:AE000516 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
GO:GO:0003677 EMBL:BX842583 GO:GO:0006351 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844
eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704 PIR:A70564
RefSeq:NP_218165.1 RefSeq:NP_338297.1 RefSeq:YP_006517135.1
ProteinModelPortal:P63848 SMR:P63848 PRIDE:P63848
EnsemblBacteria:EBMYCT00000001507 EnsemblBacteria:EBMYCT00000071867
GeneID:13317256 GeneID:885837 GeneID:922742 KEGG:mtc:MT3750.1
KEGG:mtu:Rv3648c KEGG:mtv:RVBD_3648c PATRIC:18130006
TubercuList:Rv3648c OMA:AWEDEEV ProtClustDB:CLSK792621
Uniprot:P63848
Length = 67
Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
Identities = 34/49 (69%), Positives = 39/49 (79%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSV 57
GTVKWF+A+KGFGFIAPEDG D+FVH T I+ GFRTL E Q VEF +
Sbjct: 4 GTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEI 52
>UNIPROTKB|P0A968 [details] [associations]
symbol:cspD species:83333 "Escherichia coli K-12"
[GO:0003697 "single-stranded DNA binding" evidence=IDA] [GO:0042594
"response to starvation" evidence=IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008156 "negative
regulation of DNA replication" evidence=IEA;IDA] [GO:0003723 "RNA
binding" evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 InterPro:IPR012156
InterPro:IPR012751 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0042594 GO:GO:0003723 GO:GO:0003697
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0008156
InterPro:IPR019844 EMBL:M31045 eggNOG:COG1278 HOGENOM:HOG000070674
KO:K03704 PIR:H64826 RefSeq:NP_415401.1 RefSeq:YP_489153.1
ProteinModelPortal:P0A968 SMR:P0A968 DIP:DIP-47833N IntAct:P0A968
MINT:MINT-1219798 PaxDb:P0A968 PRIDE:P0A968
EnsemblBacteria:EBESCT00000001356 EnsemblBacteria:EBESCT00000017372
GeneID:12934143 GeneID:945669 KEGG:ecj:Y75_p0853 KEGG:eco:b0880
PATRIC:32116969 EchoBASE:EB1102 EcoGene:EG11111 OMA:QVVRFDV
ProtClustDB:PRK09937 BioCyc:EcoCyc:EG11111-MONOMER
BioCyc:ECOL316407:JW0864-MONOMER Genevestigator:P0A968
TIGRFAMs:TIGR02381 Uniprot:P0A968
Length = 74
Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
Identities = 37/69 (53%), Positives = 48/69 (69%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGRTKAV 68
GTVKWF+ KGFGFI PE GGED+F H ++I+ +G+RTL GQ+V+F V G G +V
Sbjct: 4 GTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPKGNHASV 63
Query: 69 ----DVEAA 73
+VEAA
Sbjct: 64 IVPVEVEAA 72
>TIGR_CMR|SO_2628 [details] [associations]
symbol:SO_2628 "stress response protein CspD"
species:211586 "Shewanella oneidensis MR-1" [GO:0003697
"single-stranded DNA binding" evidence=ISS] [GO:0003723 "RNA
binding" evidence=ISS] [GO:0006950 "response to stress"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 InterPro:IPR012751 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005737 GO:GO:0006950 GO:GO:0006355 GO:GO:0003677
EMBL:AE014299 GenomeReviews:AE014299_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844 HSSP:O54310
HOGENOM:HOG000070674 KO:K03704 TIGRFAMs:TIGR02381
RefSeq:NP_718213.1 ProteinModelPortal:Q8EDW3 SMR:Q8EDW3
GeneID:1170330 KEGG:son:SO_2628 PATRIC:23524883 OMA:DGCENDI
ProtClustDB:CLSK906807 Uniprot:Q8EDW3
Length = 68
Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
Identities = 33/57 (57%), Positives = 43/57 (75%)
Query: 7 SSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDG 63
+SGTVKWF+ KGFGFI P+ GGED+F H ++I+ EG+RTL GQ V+F V+ G G
Sbjct: 2 ASGTVKWFNNAKGFGFICPDQGGEDVFAHYSTIEMEGYRTLKAGQPVQFEVEQGPKG 58
>TIGR_CMR|SPO_0437 [details] [associations]
symbol:SPO_0437 "cold shock family protein" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003677 "DNA binding" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005737 GO:GO:0006355 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 KO:K03704 HOGENOM:HOG000070673
RefSeq:YP_165700.1 ProteinModelPortal:Q5LWA5 SMR:Q5LWA5
GeneID:3192720 KEGG:sil:SPO0437 PATRIC:23374139 OMA:VEFAIHR
ProtClustDB:CLSK747481 Uniprot:Q5LWA5
Length = 68
Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 32/65 (49%), Positives = 48/65 (73%)
Query: 7 SSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGRTK 66
++GTVKWF+ KGFGFIAPE+GG+D+FVH ++++ G L++ Q V + + G DGR
Sbjct: 2 ATGTVKWFNTTKGFGFIAPEEGGKDVFVHISAVERSGLTGLADNQKVSYELKPGRDGRES 61
Query: 67 AVDVE 71
AVD++
Sbjct: 62 AVDLK 66
>UNIPROTKB|P91599 [details] [associations]
symbol:lin-28 "Protein lin-28" species:31234
"Caenorhabditis remanei" [GO:0001708 "cell fate specification"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
InterPro:IPR001878 InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050 PROSITE:PS50158
SMART:SM00343 SMART:SM00357 GO:GO:0007275 GO:GO:0001708
GO:GO:0005737 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:4.10.60.10 SUPFAM:SSF57756 eggNOG:COG1278 HSSP:O54310
EMBL:U75913 EMBL:U75914 ProteinModelPortal:P91599 Uniprot:P91599
Length = 214
Score = 142 (55.0 bits), Expect = 1.3e-14, Sum P(3) = 1.3e-14
Identities = 24/59 (40%), Positives = 39/59 (66%)
Query: 6 RSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGR 64
R G+ KWF+ KG+GF+ + EDLFVHQ+++ +GFR+L EG+ V + + +G+
Sbjct: 48 RYYGSCKWFNVSKGYGFVIDDITREDLFVHQSNLNMQGFRSLDEGERVSYYIQERSNGK 106
Score = 35 (17.4 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 4/11 (36%), Positives = 7/11 (63%)
Query: 120 CFNCGRTGHIA 130
C+ CG H++
Sbjct: 164 CYTCGSEEHVS 174
Score = 33 (16.7 bits), Expect = 1.3e-14, Sum P(3) = 1.3e-14
Identities = 5/8 (62%), Positives = 6/8 (75%)
Query: 161 HFARDCPN 168
H A+ CPN
Sbjct: 149 HKAKSCPN 156
Score = 32 (16.3 bits), Expect = 1.3e-14, Sum P(3) = 1.3e-14
Identities = 4/6 (66%), Positives = 5/6 (83%)
Query: 120 CFNCGR 125
CF CG+
Sbjct: 140 CFRCGK 145
>UNIPROTKB|P0A972 [details] [associations]
symbol:cspE species:83333 "Escherichia coli K-12"
[GO:0003723 "RNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0001072 "RNA
binding transcription antitermination factor activity"
evidence=IDA] [GO:0060567 "negative regulation of DNA-dependent
transcription, termination" evidence=IDA] [GO:0031564
"transcription antitermination" evidence=IDA] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 InterPro:IPR012156
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0006351
GO:GO:0003697 EMBL:U82598 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR019844 EMBL:D28497 EMBL:S83396
eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704 GO:GO:0001072
GO:GO:0060567 OMA:WTKRTTI EMBL:L29054 PIR:S49050 RefSeq:NP_415156.1
RefSeq:YP_488914.1 ProteinModelPortal:P0A972 SMR:P0A972
DIP:DIP-47834N IntAct:P0A972 MINT:MINT-1221433 PaxDb:P0A972
PRIDE:P0A972 EnsemblBacteria:EBESCT00000004662
EnsemblBacteria:EBESCT00000018389 GeneID:12931648 GeneID:947024
KEGG:ecj:Y75_p0613 KEGG:eco:b0623 PATRIC:32116426 EchoBASE:EB2096
EcoGene:EG12179 ProtClustDB:PRK09507 BioCyc:EcoCyc:EG12179-MONOMER
BioCyc:ECOL316407:JW0618-MONOMER Genevestigator:P0A972
GO:GO:0008143 Uniprot:P0A972
Length = 69
Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 33/64 (51%), Positives = 46/64 (71%)
Query: 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDG 63
+ + G VKWF+ KGFGFI PEDG +D+FVH ++I++ GF+TL+EGQ VEF + G G
Sbjct: 1 MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKG 60
Query: 64 RTKA 67
+ A
Sbjct: 61 PSAA 64
>UNIPROTKB|P0A9Y6 [details] [associations]
symbol:cspC species:83333 "Escherichia coli K-12"
[GO:0001072 "RNA binding transcription antitermination factor
activity" evidence=IDA] [GO:0060567 "negative regulation of
DNA-dependent transcription, termination" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0031564 "transcription antitermination"
evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 InterPro:IPR012156
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0016020 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0006351 GO:GO:0003723 GO:GO:0003697 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844
eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704 GO:GO:0001072
GO:GO:0060567 EMBL:L28430 EMBL:D28496 PIR:S43618 RefSeq:NP_416337.1
RefSeq:YP_490084.1 ProteinModelPortal:P0A9Y6 SMR:P0A9Y6
DIP:DIP-36183N IntAct:P0A9Y6 MINT:MINT-1218847 SWISS-2DPAGE:P0A9Y6
PaxDb:P0A9Y6 PRIDE:P0A9Y6 EnsemblBacteria:EBESCT00000000185
EnsemblBacteria:EBESCT00000017479 GeneID:12934542 GeneID:946339
KEGG:ecj:Y75_p1798 KEGG:eco:b1823 PATRIC:32118965 EchoBASE:EB2120
EcoGene:EG12204 OMA:LEEGQHV ProtClustDB:PRK10943
BioCyc:EcoCyc:EG12204-MONOMER BioCyc:ECOL316407:JW1812-MONOMER
Genevestigator:P0A9Y6 Uniprot:P0A9Y6
Length = 69
Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 37/72 (51%), Positives = 51/72 (70%)
Query: 1 MAEVQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVG 60
MA+++ G VKWF+ KGFGFI P DG +D+FVH ++I+ GF+TL+EGQ VEF + G
Sbjct: 1 MAKIK---GQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDG 57
Query: 61 EDGRTKAVDVEA 72
+ G AV+V A
Sbjct: 58 QKGPA-AVNVTA 68
>TIGR_CMR|CPS_0718 [details] [associations]
symbol:CPS_0718 "cold-shock DNA-binding domain family
protein" species:167879 "Colwellia psychrerythraea 34H" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 EMBL:CP000083
GenomeReviews:CP000083_GR Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR019844 eggNOG:COG1278
HOGENOM:HOG000070674 KO:K03704 RefSeq:YP_267468.1
ProteinModelPortal:Q488P6 SMR:Q488P6 GeneID:3518546
KEGG:cps:CPS_0718 PATRIC:21464753 OMA:QKGPCAN
ProtClustDB:CLSK768090 BioCyc:CPSY167879:GI48-805-MONOMER
Uniprot:Q488P6
Length = 68
Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 34/58 (58%), Positives = 44/58 (75%)
Query: 7 SSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG-FRTLSEGQTVEFSVDVGEDG 63
S G VKWF++ KGFGFI PEDG +DLFVH + I+S G + TL++GQTVE+ V G+ G
Sbjct: 2 SKGIVKWFNSDKGFGFITPEDGSKDLFVHHSEIQSGGEYATLADGQTVEYEVGQGQKG 59
>TIGR_CMR|SO_1648 [details] [associations]
symbol:SO_1648 "cold shock domain family protein"
species:211586 "Shewanella oneidensis MR-1" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
EMBL:AE014299 GenomeReviews:AE014299_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 HOGENOM:HOG000070674 HSSP:P41016
RefSeq:NP_717259.2 ProteinModelPortal:Q8EGF6 GeneID:1169442
PATRIC:23522932 OMA:FEVENGQ ProtClustDB:CLSK912356 Uniprot:Q8EGF6
Length = 69
Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 31/60 (51%), Positives = 46/60 (76%)
Query: 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDG 63
+ +++G VKWF+ KGFGFI+P++GG D FVH +I S+GF+TL+EGQ V + V+ G+ G
Sbjct: 1 MSKTTGVVKWFNEDKGFGFISPDNGGADAFVHFRAIVSDGFKTLAEGQKVSYEVEQGQKG 60
>UNIPROTKB|Q9KL16 [details] [associations]
symbol:cspV "Cold shock protein CspV" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 GO:GO:0005737
GO:GO:0006355 GO:GO:0003677 GO:GO:0009409 GO:GO:0006351
EMBL:AE003853 GenomeReviews:AE003853_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 eggNOG:COG1278 KO:K03704
OMA:LNIKGHY EMBL:AF409091 PIR:E82399 RefSeq:NP_233318.1
ProteinModelPortal:Q9KL16 SMR:Q9KL16 DNASU:2612854 GeneID:2612854
KEGG:vch:VCA0933 PATRIC:20086396 ProtClustDB:CLSK2748081
Uniprot:Q9KL16
Length = 70
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 32/58 (55%), Positives = 45/58 (77%)
Query: 6 RSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDG 63
+ +G+VKWF+ KGFGF+ ++GG D+FVH SI+SEGF+TL+EGQ V F V+ G+ G
Sbjct: 4 KMTGSVKWFNETKGFGFLTQDNGGNDVFVHFNSIQSEGFKTLAEGQRVSFIVEQGKKG 61
>TIGR_CMR|VC_A0933 [details] [associations]
symbol:VC_A0933 "cold shock domain family protein"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 GO:GO:0005737
GO:GO:0006355 GO:GO:0003677 GO:GO:0009409 GO:GO:0006351
EMBL:AE003853 GenomeReviews:AE003853_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 eggNOG:COG1278 KO:K03704
OMA:LNIKGHY EMBL:AF409091 PIR:E82399 RefSeq:NP_233318.1
ProteinModelPortal:Q9KL16 SMR:Q9KL16 DNASU:2612854 GeneID:2612854
KEGG:vch:VCA0933 PATRIC:20086396 ProtClustDB:CLSK2748081
Uniprot:Q9KL16
Length = 70
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 32/58 (55%), Positives = 45/58 (77%)
Query: 6 RSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDG 63
+ +G+VKWF+ KGFGF+ ++GG D+FVH SI+SEGF+TL+EGQ V F V+ G+ G
Sbjct: 4 KMTGSVKWFNETKGFGFLTQDNGGNDVFVHFNSIQSEGFKTLAEGQRVSFIVEQGKKG 61
>TIGR_CMR|SPO_1275 [details] [associations]
symbol:SPO_1275 "cold shock family protein" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003677 "DNA binding" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005737 GO:GO:0006355 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 KO:K03704 OMA:KMRGKVS HOGENOM:HOG000070673
RefSeq:YP_166520.1 ProteinModelPortal:Q5LTY5 SMR:Q5LTY5
GeneID:3194159 KEGG:sil:SPO1275 PATRIC:23375855
ProtClustDB:CLSK759123 Uniprot:Q5LTY5
Length = 68
Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 32/64 (50%), Positives = 47/64 (73%)
Query: 8 SGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGRTKA 67
+GTVKWF+A KG+GFIAP+DGG+D+FVH ++++ G L++ Q V F + G DGR A
Sbjct: 3 TGTVKWFNATKGYGFIAPDDGGKDVFVHISAVERSGLTGLADNQKVSFEMLDGRDGRKMA 62
Query: 68 VDVE 71
D++
Sbjct: 63 GDIK 66
>UNIPROTKB|P0A9X9 [details] [associations]
symbol:cspA species:83333 "Escherichia coli K-12"
[GO:0009409 "response to cold" evidence=IEP] [GO:0006950 "response
to stress" evidence=IEP] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003727 "single-stranded RNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0060567 "negative regulation of
DNA-dependent transcription, termination" evidence=IDA] [GO:0001072
"RNA binding transcription antitermination factor activity"
evidence=IDA] [GO:0031564 "transcription antitermination"
evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEP;IDA;TAS] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 InterPro:IPR012156
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 EMBL:U00039 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0009409
GO:GO:0003727 GO:GO:0006351 GO:GO:0003697 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844
eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704 EMBL:M30139
EMBL:U60035 PIR:JH0201 RefSeq:NP_418012.1 RefSeq:YP_491880.1
PDB:1MJC PDB:2BH8 PDB:3MEF PDBsum:1MJC PDBsum:2BH8 PDBsum:3MEF
ProteinModelPortal:P0A9X9 SMR:P0A9X9 DIP:DIP-31862N IntAct:P0A9X9
MINT:MINT-1220153 PaxDb:P0A9X9 PRIDE:P0A9X9
EnsemblBacteria:EBESCT00000002447 EnsemblBacteria:EBESCT00000002448
EnsemblBacteria:EBESCT00000016761 GeneID:12933539 GeneID:948070
KEGG:ecj:Y75_p3621 KEGG:eco:b3556 PATRIC:32122584 EchoBASE:EB0164
EcoGene:EG10166 OMA:AHFRQIT ProtClustDB:PRK10354
BioCyc:EcoCyc:PD03695 BioCyc:ECOL316407:JW3525-MONOMER
EvolutionaryTrace:P0A9X9 Genevestigator:P0A9X9 GO:GO:0001072
GO:GO:0060567 Uniprot:P0A9X9
Length = 70
Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 29/58 (50%), Positives = 46/58 (79%)
Query: 6 RSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDG 63
+ +G VKWF+A KGFGFI P+DG +D+FVH ++I+++G+++L EGQ V F+++ G G
Sbjct: 4 KMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKG 61
>UNIPROTKB|P36995 [details] [associations]
symbol:cspB species:83333 "Escherichia coli K-12"
[GO:0003723 "RNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0009409 "response
to cold" evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA;IEP] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0009409 GO:GO:0006351 GO:GO:0003723
GO:GO:0003697 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704
EMBL:L28429 EMBL:AF003590 PIR:S43617 RefSeq:NP_416075.1
RefSeq:YP_489821.1 ProteinModelPortal:P36995 SMR:P36995
DIP:DIP-9334N IntAct:P36995 MINT:MINT-1241665 PaxDb:P36995
EnsemblBacteria:EBESCT00000000475 EnsemblBacteria:EBESCT00000016617
GeneID:12930135 GeneID:946091 KEGG:ecj:Y75_p1533 KEGG:eco:b1557
PATRIC:32118416 EchoBASE:EB2119 EcoGene:EG12203 OMA:ANVFRRN
ProtClustDB:CLSK891756 BioCyc:EcoCyc:EG12203-MONOMER
BioCyc:ECOL316407:JW1549-MONOMER Genevestigator:P36995
Uniprot:P36995
Length = 71
Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
Identities = 32/62 (51%), Positives = 46/62 (74%)
Query: 6 RSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGRT 65
+ +G VKWF+A KGFGFI+P DG +D+FVH ++I+++ +RTL EGQ V FS++ G G
Sbjct: 4 KMTGLVKWFNADKGFGFISPVDGSKDVFVHFSAIQNDNYRTLFEGQKVTFSIESGAKGPA 63
Query: 66 KA 67
A
Sbjct: 64 AA 65
>UNIPROTKB|P0A986 [details] [associations]
symbol:cspI species:83333 "Escherichia coli K-12"
[GO:0009409 "response to cold" evidence=IDA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 InterPro:IPR012156
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0006355 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0009409 GO:GO:0006351 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844
eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704 OMA:IQSNNFK
PIR:C64910 RefSeq:NP_416070.1 RefSeq:YP_489816.1
ProteinModelPortal:P0A986 SMR:P0A986 DIP:DIP-48195N IntAct:P0A986
MINT:MINT-1309031 PRIDE:P0A986 EnsemblBacteria:EBESCT00000000769
EnsemblBacteria:EBESCT00000016713 GeneID:12931246 GeneID:946099
KEGG:ecj:Y75_p1528 KEGG:eco:b1552 PATRIC:32118406 EchoBASE:EB3636
EcoGene:EG13877 ProtClustDB:CLSK891754 BioCyc:EcoCyc:G6825-MONOMER
BioCyc:ECOL316407:JW1544-MONOMER Genevestigator:P0A986
Uniprot:P0A986
Length = 70
Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 34/67 (50%), Positives = 48/67 (71%)
Query: 6 RSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGRT 65
+ +G VKWF+ +KGFGFI P+DG +D+FVH ++I+S F+TL+E Q VEF ++ G G
Sbjct: 4 KMTGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNDFKTLTENQEVEFGIENGPKGPA 63
Query: 66 KAVDVEA 72
AV V A
Sbjct: 64 -AVHVVA 69
>FB|FBgn0035626 [details] [associations]
symbol:lin-28 "lin-28" species:7227 "Drosophila melanogaster"
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0001708 "cell fate specification" evidence=ISS]
InterPro:IPR001878 InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00313 PRINTS:PR00050 PROSITE:PS50158 SMART:SM00343
SMART:SM00357 GO:GO:0005737 EMBL:AE014296 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 Gene3D:4.10.60.10
SUPFAM:SSF57756 eggNOG:COG1278 HSSP:O54310 CTD:38639
GeneTree:ENSGT00390000001177 EMBL:AF521096 EMBL:AY118360
RefSeq:NP_647983.1 UniGene:Dm.13816 ProteinModelPortal:Q9VRN5
SMR:Q9VRN5 STRING:Q9VRN5 PaxDb:Q9VRN5 EnsemblMetazoa:FBtr0077090
GeneID:38639 KEGG:dme:Dmel_CG17334 UCSC:CG17334-RA
FlyBase:FBgn0035626 InParanoid:Q9VRN5 OMA:FANHIAS OrthoDB:EOG447D9P
PhylomeDB:Q9VRN5 GenomeRNAi:38639 NextBio:809656 Bgee:Q9VRN5
GermOnline:CG17334 Uniprot:Q9VRN5
Length = 195
Score = 149 (57.5 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 25/47 (53%), Positives = 35/47 (74%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEF 55
G KWF+ KG+GF+ P DGG+++FVHQ+ I+ GFR+L E + VEF
Sbjct: 41 GKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIQMSGFRSLGEQEEVEF 87
Score = 40 (19.1 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 120 CFNCGR-TGHIA 130
C+NCG HIA
Sbjct: 127 CYNCGEFANHIA 138
>TIGR_CMR|BA_3594 [details] [associations]
symbol:BA_3594 "cold shock protein CspB" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 KO:K03704 OMA:AHFRQIT HOGENOM:HOG000070673
HSSP:P41016 RefSeq:NP_845864.1 RefSeq:YP_020229.1
RefSeq:YP_029590.1 ProteinModelPortal:Q81YF5 SMR:Q81YF5
DNASU:1086356 EnsemblBacteria:EBBACT00000010475
EnsemblBacteria:EBBACT00000015696 EnsemblBacteria:EBBACT00000021214
GeneID:1086356 GeneID:2816334 GeneID:2852892 KEGG:ban:BA_3594
KEGG:bar:GBAA_3594 KEGG:bat:BAS3333 ProtClustDB:CLSK917095
BioCyc:BANT260799:GJAJ-3395-MONOMER
BioCyc:BANT261594:GJ7F-3504-MONOMER Uniprot:Q81YF5
Length = 66
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 33/56 (58%), Positives = 43/56 (76%)
Query: 8 SGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDG 63
+G VKWF+++KGFGFI E GGED+FVH ++I+ EGF+TL EGQ V F V+ G G
Sbjct: 3 NGKVKWFNSEKGFGFIEVE-GGEDVFVHFSAIQGEGFKTLEEGQEVTFEVEQGNRG 57
>TIGR_CMR|CPS_2895 [details] [associations]
symbol:CPS_2895 "cold shock-like protein CspD"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 InterPro:IPR012751
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0006950 GO:GO:0006355
GO:GO:0003677 EMBL:CP000083 GenomeReviews:CP000083_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704
OMA:QVVRFDV TIGRFAMs:TIGR02381 RefSeq:YP_269596.1
ProteinModelPortal:Q480C3 SMR:Q480C3 STRING:Q480C3 GeneID:3518797
KEGG:cps:CPS_2895 PATRIC:21468815
BioCyc:CPSY167879:GI48-2945-MONOMER Uniprot:Q480C3
Length = 72
Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 30/59 (50%), Positives = 42/59 (71%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGRTKA 67
GTVKWF+ KGFGFI P+ GGED+F H ++I+ +G+RTL GQ V++ ++ G G A
Sbjct: 4 GTVKWFNNAKGFGFIRPDSGGEDIFAHYSTIEMDGYRTLKAGQDVDYELNDGPKGHHAA 62
>TIGR_CMR|CHY_0157 [details] [associations]
symbol:CHY_0157 "cold shock protein CspC" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR002059 InterPro:IPR011129 InterPro:IPR012156
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
EMBL:CP000141 GenomeReviews:CP000141_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844
eggNOG:COG1278 HOGENOM:HOG000070674 OMA:WTKRTTI RefSeq:YP_359029.1
ProteinModelPortal:Q3AFQ5 SMR:Q3AFQ5 STRING:Q3AFQ5 GeneID:3727298
KEGG:chy:CHY_0157 PATRIC:21273501 ProtClustDB:CLSK742705
BioCyc:CHYD246194:GJCN-157-MONOMER Uniprot:Q3AFQ5
Length = 65
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 35/62 (56%), Positives = 43/62 (69%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGRTKAV 68
G VKWF KG+GFI EDGG D+FVH ++IK GF+TL EGQ VEF++ G G +A
Sbjct: 3 GKVKWFDPAKGYGFIEREDGG-DVFVHFSAIKGNGFKTLEEGQRVEFNIVEGTRG-PQAA 60
Query: 69 DV 70
DV
Sbjct: 61 DV 62
>UNIPROTKB|Q9KMY2 [details] [associations]
symbol:VC_A0184 "Cold shock DNA-binding domain protein"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR002059 InterPro:IPR011129 InterPro:IPR012156
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
GO:GO:0009409 EMBL:AE003853 GenomeReviews:AE003853_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 KO:K03704 HSSP:P41016 PIR:A82489
RefSeq:NP_232584.1 ProteinModelPortal:Q9KMY2 SMR:Q9KMY2
DNASU:2611851 GeneID:2611851 KEGG:vch:VCA0184 PATRIC:20084941
OMA:SFEATQD ProtClustDB:CLSK2392342 Uniprot:Q9KMY2
Length = 69
Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 31/56 (55%), Positives = 42/56 (75%)
Query: 8 SGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDG 63
+GTVKWF+ KGFGFI E+G D+F H ++I+ +GFRTL+EGQ VEF + G+ G
Sbjct: 6 TGTVKWFNETKGFGFIKQENG-PDVFAHFSAIQGDGFRTLAEGQKVEFVITQGQKG 60
>TIGR_CMR|VC_A0184 [details] [associations]
symbol:VC_A0184 "cold shock DNA-binding domain protein"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 GO:GO:0009409
EMBL:AE003853 GenomeReviews:AE003853_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844 KO:K03704
HSSP:P41016 PIR:A82489 RefSeq:NP_232584.1 ProteinModelPortal:Q9KMY2
SMR:Q9KMY2 DNASU:2611851 GeneID:2611851 KEGG:vch:VCA0184
PATRIC:20084941 OMA:SFEATQD ProtClustDB:CLSK2392342 Uniprot:Q9KMY2
Length = 69
Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 31/56 (55%), Positives = 42/56 (75%)
Query: 8 SGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDG 63
+GTVKWF+ KGFGFI E+G D+F H ++I+ +GFRTL+EGQ VEF + G+ G
Sbjct: 6 TGTVKWFNETKGFGFIKQENG-PDVFAHFSAIQGDGFRTLAEGQKVEFVITQGQKG 60
>TIGR_CMR|BA_5115 [details] [associations]
symbol:BA_5115 "cold shock protein CspD" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 KO:K03704 RefSeq:NP_847301.1
RefSeq:YP_021768.1 RefSeq:YP_030998.1 ProteinModelPortal:Q81K90
SMR:Q81K90 DNASU:1084426 EnsemblBacteria:EBBACT00000008459
EnsemblBacteria:EBBACT00000015452 EnsemblBacteria:EBBACT00000020851
GeneID:1084426 GeneID:2816754 GeneID:2848947 KEGG:ban:BA_5115
KEGG:bar:GBAA_5115 KEGG:bat:BAS4754 HOGENOM:HOG000070673
OMA:IQSNNFK ProtClustDB:CLSK917532
BioCyc:BANT260799:GJAJ-4808-MONOMER
BioCyc:BANT261594:GJ7F-4967-MONOMER Uniprot:Q81K90
Length = 66
Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 30/56 (53%), Positives = 42/56 (75%)
Query: 8 SGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDG 63
+G VKWF+++KGFGFI E GG+D+FVH ++I+ +GF+TL EGQ V F + G G
Sbjct: 3 TGKVKWFNSEKGFGFIEVE-GGDDVFVHFSAIQGDGFKTLEEGQEVSFEIVEGNRG 57
>UNIPROTKB|Q47VJ5 [details] [associations]
symbol:CPS_4529 "Cold-shock DNA-binding domain family
protein" species:167879 "Colwellia psychrerythraea 34H" [GO:0003677
"DNA binding" evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
EMBL:CP000083 GenomeReviews:CP000083_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 eggNOG:COG1278
HOGENOM:HOG000070674 KO:K03704 RefSeq:YP_271177.1
ProteinModelPortal:Q47VJ5 SMR:Q47VJ5 GeneID:3518971
KEGG:cps:CPS_4529 PATRIC:21471883 OMA:ETEGQDI
ProtClustDB:CLSK757227 BioCyc:CPSY167879:GI48-4538-MONOMER
Uniprot:Q47VJ5
Length = 68
Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 31/57 (54%), Positives = 42/57 (73%)
Query: 7 SSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDG 63
++GTVKWF+ KGFGFI E+G D+F H +I +GF+TL+EGQ VEF+V G+ G
Sbjct: 4 TTGTVKWFNEAKGFGFIEQENG-PDVFAHFNAIVGDGFKTLAEGQKVEFTVTDGQKG 59
>TIGR_CMR|CHY_0155 [details] [associations]
symbol:CHY_0155 "cold shock protein CspC" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR002059 InterPro:IPR011129 InterPro:IPR012156
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
EMBL:CP000141 GenomeReviews:CP000141_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844
eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704
ProtClustDB:CLSK742705 RefSeq:YP_359027.1 ProteinModelPortal:Q3AFQ7
SMR:Q3AFQ7 STRING:Q3AFQ7 GeneID:3726793 KEGG:chy:CHY_0155
PATRIC:21273497 OMA:IETEGSE BioCyc:CHYD246194:GJCN-155-MONOMER
Uniprot:Q3AFQ7
Length = 65
Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 31/55 (56%), Positives = 40/55 (72%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDG 63
G VKWF +KG+GFI EDGG D+FVH ++I+ +GF+TL EGQ VEF + G G
Sbjct: 3 GKVKWFDPKKGYGFIEREDGG-DVFVHFSAIQEKGFKTLEEGQRVEFEIVEGARG 56
>TIGR_CMR|CPS_4529 [details] [associations]
symbol:CPS_4529 "cold shock protein cspV" species:167879
"Colwellia psychrerythraea 34H" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
EMBL:CP000083 GenomeReviews:CP000083_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 eggNOG:COG1278
HOGENOM:HOG000070674 KO:K03704 RefSeq:YP_271177.1
ProteinModelPortal:Q47VJ5 SMR:Q47VJ5 GeneID:3518971
KEGG:cps:CPS_4529 PATRIC:21471883 OMA:ETEGQDI
ProtClustDB:CLSK757227 BioCyc:CPSY167879:GI48-4538-MONOMER
Uniprot:Q47VJ5
Length = 68
Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 31/57 (54%), Positives = 42/57 (73%)
Query: 7 SSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDG 63
++GTVKWF+ KGFGFI E+G D+F H +I +GF+TL+EGQ VEF+V G+ G
Sbjct: 4 TTGTVKWFNEAKGFGFIEQENG-PDVFAHFNAIVGDGFKTLAEGQKVEFTVTDGQKG 59
>TIGR_CMR|SO_2787 [details] [associations]
symbol:SO_2787 "cold shock domain family protein"
species:211586 "Shewanella oneidensis MR-1" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
GO:GO:0003677 EMBL:AE014299 GenomeReviews:AE014299_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 HOGENOM:HOG000070674 KO:K03704 HSSP:P41016
RefSeq:NP_718365.1 ProteinModelPortal:Q8EDG5 SMR:Q8EDG5
GeneID:1170487 KEGG:son:SO_2787 PATRIC:23525209 OMA:FRAIQGN
ProtClustDB:CLSK906860 Uniprot:Q8EDG5
Length = 69
Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 31/56 (55%), Positives = 40/56 (71%)
Query: 8 SGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDG 63
+G VKWF++ KGFGFI E G D+FVH +I S+GF+TL EGQ V F+V G+ G
Sbjct: 5 TGVVKWFNSDKGFGFIEQESG-PDVFVHFRAINSDGFKTLDEGQKVSFTVTQGQKG 59
>TIGR_CMR|BA_5424 [details] [associations]
symbol:BA_5424 "cold shock protein CspC" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704
RefSeq:NP_847592.1 RefSeq:YP_022086.2 RefSeq:YP_031279.1
ProteinModelPortal:P62169 SMR:P62169 DNASU:1085020
EnsemblBacteria:EBBACT00000012131 EnsemblBacteria:EBBACT00000018032
EnsemblBacteria:EBBACT00000022166 GeneID:1085020 GeneID:2818619
GeneID:2851935 KEGG:ban:BA_5424 KEGG:bar:GBAA_5424 KEGG:bat:BAS5040
OMA:WTKRTTI ProtClustDB:CLSK873658
BioCyc:BANT260799:GJAJ-5115-MONOMER
BioCyc:BANT261594:GJ7F-5291-MONOMER Uniprot:P62169
Length = 65
Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 30/55 (54%), Positives = 42/55 (76%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDG 63
G VKWF+A+KGFGFI EDG +D+FVH ++I+ +G+++L EGQ VEF + G G
Sbjct: 3 GRVKWFNAEKGFGFIEREDG-DDVFVHFSAIQQDGYKSLEEGQQVEFDIVDGARG 56
>TIGR_CMR|BA_2422 [details] [associations]
symbol:BA_2422 "cold shock protein CspA" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704
RefSeq:NP_844799.1 RefSeq:YP_019064.1 RefSeq:YP_028518.1
ProteinModelPortal:Q81QK2 SMR:Q81QK2 DNASU:1086343
EnsemblBacteria:EBBACT00000011610 EnsemblBacteria:EBBACT00000017774
EnsemblBacteria:EBBACT00000021660 GeneID:1086343 GeneID:2816216
GeneID:2851992 KEGG:ban:BA_2422 KEGG:bar:GBAA_2422 KEGG:bat:BAS2257
OMA:ASESVHI ProtClustDB:CLSK916624
BioCyc:BANT260799:GJAJ-2323-MONOMER
BioCyc:BANT261594:GJ7F-2403-MONOMER Uniprot:Q81QK2
Length = 67
Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 30/56 (53%), Positives = 41/56 (73%)
Query: 8 SGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDG 63
+G VKWF+++KGFGFI E GG D+FVH ++I +GF++L EGQ V F V+ G G
Sbjct: 4 TGKVKWFNSEKGFGFIEVE-GGNDVFVHFSAITGDGFKSLDEGQEVSFEVEDGNRG 58
>UNIPROTKB|Q9KSW4 [details] [associations]
symbol:cspD "Cold shock-like protein CspD" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 InterPro:IPR012751
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0009409 GO:GO:0006351
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 KO:K03704 OMA:QVVRFDV
TIGRFAMs:TIGR02381 PIR:C82236 RefSeq:NP_230787.1
ProteinModelPortal:Q9KSW4 SMR:Q9KSW4 DNASU:2614575 GeneID:2614575
KEGG:vch:VC1142 PATRIC:20081376 ProtClustDB:CLSK793973
Uniprot:Q9KSW4
Length = 76
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 28/57 (49%), Positives = 39/57 (68%)
Query: 7 SSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDG 63
++GTVKWF+ KGFGFI PE D+F H ++I+ +G+RTL GQ V + V+ G G
Sbjct: 5 ATGTVKWFNNAKGFGFICPEGEDGDIFAHYSTIQMDGYRTLKAGQQVSYQVEQGPKG 61
>TIGR_CMR|GSU_0581 [details] [associations]
symbol:GSU_0581 "cold-shock domain family protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR002059 InterPro:IPR011129 InterPro:IPR012156
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
EMBL:AE017180 GenomeReviews:AE017180_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844
HOGENOM:HOG000070674 KO:K03704 RefSeq:NP_951639.1
ProteinModelPortal:Q74FM5 SMR:Q74FM5 GeneID:2685798
KEGG:gsu:GSU0581 PATRIC:22023911 OMA:RAITSAF ProtClustDB:CLSK827926
BioCyc:GSUL243231:GH27-557-MONOMER Uniprot:Q74FM5
Length = 66
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 34/67 (50%), Positives = 45/67 (67%)
Query: 7 SSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGRTK 66
+ G VKWF+ KG+GFI E+G ED+FVH +SI+ +GF+TL EGQ V F V G G +
Sbjct: 2 AKGVVKWFNDSKGYGFIEQENG-EDVFVHFSSIQGDGFKTLVEGQAVTFDVVQGAKG-LQ 59
Query: 67 AVDVEAA 73
A +V A
Sbjct: 60 AANVMKA 66
>TIGR_CMR|VC_1142 [details] [associations]
symbol:VC_1142 "cold shock-like protein CspD" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0009409 "response
to cold" evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 InterPro:IPR012751 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0009409 GO:GO:0006351
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 KO:K03704 OMA:QVVRFDV
TIGRFAMs:TIGR02381 PIR:C82236 RefSeq:NP_230787.1
ProteinModelPortal:Q9KSW4 SMR:Q9KSW4 DNASU:2614575 GeneID:2614575
KEGG:vch:VC1142 PATRIC:20081376 ProtClustDB:CLSK793973
Uniprot:Q9KSW4
Length = 76
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 28/57 (49%), Positives = 39/57 (68%)
Query: 7 SSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDG 63
++GTVKWF+ KGFGFI PE D+F H ++I+ +G+RTL GQ V + V+ G G
Sbjct: 5 ATGTVKWFNNAKGFGFICPEGEDGDIFAHYSTIQMDGYRTLKAGQQVSYQVEQGPKG 61
>TIGR_CMR|GSU_1905 [details] [associations]
symbol:GSU_1905 "cold shock domain family protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
GO:GO:0003677 EMBL:AE017180 GenomeReviews:AE017180_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 HOGENOM:HOG000070674 KO:K03704
RefSeq:NP_952954.1 ProteinModelPortal:Q74BX3 SMR:Q74BX3
GeneID:2688446 KEGG:gsu:GSU1905 PATRIC:22026675 OMA:FISRDNG
ProtClustDB:CLSK828634 BioCyc:GSUL243231:GH27-1948-MONOMER
Uniprot:Q74BX3
Length = 66
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 32/65 (49%), Positives = 46/65 (70%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGRTKAV 68
G VKWF+ KGFGFI +D GED+FVH ++I+ +GF++L+EG+ V F V G G +A
Sbjct: 4 GRVKWFNDAKGFGFIE-QDNGEDVFVHFSAIQQDGFKSLAEGEQVSFDVVNGPKG-LQAA 61
Query: 69 DVEAA 73
+V+ A
Sbjct: 62 NVKKA 66
>UNIPROTKB|Q5EB47 [details] [associations]
symbol:lin28a "Protein lin-28 homolog A" species:8364
"Xenopus (Silurana) tropicalis" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0010494
"cytoplasmic stress granule" evidence=ISS] [GO:0010587 "miRNA
catabolic process" evidence=ISS] [GO:0019827 "stem cell
maintenance" evidence=ISS] [GO:0031054 "pre-miRNA processing"
evidence=ISS] [GO:0031123 "RNA 3'-end processing" evidence=ISS]
InterPro:IPR001878 InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050 PROSITE:PS50158
SMART:SM00343 SMART:SM00357 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0003723
GO:GO:0000932 GO:GO:0031054 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 HSSP:Q9H9Z2 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0019827 GO:GO:0010494 eggNOG:COG1278 CTD:79727
HOGENOM:HOG000047091 HOVERGEN:HBG081922 OrthoDB:EOG4640D4
GO:GO:0010587 GO:GO:0031123 EMBL:CR761690 EMBL:BC090084
RefSeq:NP_001015806.2 RefSeq:NP_001016266.1 UniGene:Str.45911
ProteinModelPortal:Q5EB47 SMR:Q5EB47 STRING:Q5EB47 GeneID:548523
KEGG:xtr:548523 Xenbase:XB-GENE-491384 Bgee:Q5EB47 Uniprot:Q5EB47
Length = 195
Score = 128 (50.1 bits), Expect = 3.9e-11, Sum P(2) = 3.9e-11
Identities = 26/65 (40%), Positives = 40/65 (61%)
Query: 6 RSSGTVKWFSAQKGFGFIA--PEDGGE-----DLFVHQTSIKSEGFRTLSEGQTVEFSVD 58
+ SG KWF+ + GFGF+ ++G + D+FVHQ+ + EGFR+L EG++VEF+
Sbjct: 33 QGSGVCKWFNVRMGFGFLTMTKKEGTDLETPVDVFVHQSKLHMEGFRSLKEGESVEFTFK 92
Query: 59 VGEDG 63
G
Sbjct: 93 KSSKG 97
Score = 38 (18.4 bits), Expect = 3.9e-11, Sum P(2) = 3.9e-11
Identities = 6/11 (54%), Positives = 7/11 (63%)
Query: 120 CFNCGRTGHIA 130
C+NCG H A
Sbjct: 133 CYNCGGLDHHA 143
>UNIPROTKB|Q8JHC4 [details] [associations]
symbol:lin28a "Protein lin-28 homolog A" species:8355
"Xenopus laevis" [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0010587 "miRNA catabolic process" evidence=ISS]
[GO:0019827 "stem cell maintenance" evidence=ISS] [GO:0031054
"pre-miRNA processing" evidence=ISS] [GO:0031123 "RNA 3'-end
processing" evidence=ISS] InterPro:IPR001878 InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050
PROSITE:PS50158 SMART:SM00343 SMART:SM00357 GO:GO:0005634
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0003723 GO:GO:0000932 GO:GO:0031054 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 HSSP:Q9H9Z2 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0019827 GO:GO:0010494 CTD:79727
HOVERGEN:HBG081922 GO:GO:0010587 GO:GO:0031123 EMBL:AF521098
RefSeq:NP_001080918.1 UniGene:Xl.76870 ProteinModelPortal:Q8JHC4
SMR:Q8JHC4 GeneID:387262 KEGG:xla:387262 Xenbase:XB-GENE-866059
Uniprot:Q8JHC4
Length = 195
Score = 128 (50.1 bits), Expect = 3.9e-11, Sum P(2) = 3.9e-11
Identities = 26/65 (40%), Positives = 40/65 (61%)
Query: 6 RSSGTVKWFSAQKGFGFIA--PEDGGE-----DLFVHQTSIKSEGFRTLSEGQTVEFSVD 58
+ SG KWF+ + GFGF+ ++G + D+FVHQ+ + EGFR+L EG++VEF+
Sbjct: 33 QGSGVCKWFNVRMGFGFLTMTKKEGTDLETPLDVFVHQSKLHMEGFRSLKEGESVEFTFK 92
Query: 59 VGEDG 63
G
Sbjct: 93 KSSKG 97
Score = 38 (18.4 bits), Expect = 3.9e-11, Sum P(2) = 3.9e-11
Identities = 6/11 (54%), Positives = 7/11 (63%)
Query: 120 CFNCGRTGHIA 130
C+NCG H A
Sbjct: 133 CYNCGGLDHHA 143
>ZFIN|ZDB-GENE-040426-747 [details] [associations]
symbol:lin28a "lin-28 homolog A (C. elegans)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0010629
"negative regulation of gene expression" evidence=IMP] [GO:0005634
"nucleus" evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0031054 "pre-miRNA processing" evidence=ISS]
[GO:0031123 "RNA 3'-end processing" evidence=ISS] [GO:0019827 "stem
cell maintenance" evidence=ISS] [GO:0000932 "cytoplasmic mRNA
processing body" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0010587 "miRNA catabolic process"
evidence=ISS] [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR001878 InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050
PROSITE:PS50158 SMART:SM00343 SMART:SM00357
ZFIN:ZDB-GENE-040426-747 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0003723 GO:GO:0000932
GO:GO:0031054 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
HSSP:Q9H9Z2 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0019827
GO:GO:0010494 eggNOG:COG1278 GeneTree:ENSGT00390000001177 CTD:79727
HOGENOM:HOG000047091 HOVERGEN:HBG081922 OrthoDB:EOG4640D4
GO:GO:0010587 GO:GO:0031123 EMBL:BX322664 EMBL:BC044433
IPI:IPI00495578 RefSeq:NP_957385.1 UniGene:Dr.24217
ProteinModelPortal:Q803L0 SMR:Q803L0 STRING:Q803L0 PRIDE:Q803L0
Ensembl:ENSDART00000098970 Ensembl:ENSDART00000142509 GeneID:394066
KEGG:dre:394066 InParanoid:Q803L0 NextBio:20815023
ArrayExpress:Q803L0 Bgee:Q803L0 Uniprot:Q803L0
Length = 202
Score = 124 (48.7 bits), Expect = 3.9e-11, Sum P(2) = 3.9e-11
Identities = 25/56 (44%), Positives = 35/56 (62%)
Query: 8 SGTVKWFSAQKGFGFIAPE-------DGGEDLFVHQTSIKSEGFRTLSEGQTVEFS 56
SG KWF+ + GFGF++ D D+FVHQ+ + EGFR+L EG+ VEF+
Sbjct: 35 SGVCKWFNVRMGFGFLSMTHREGICLDSPVDVFVHQSKLHMEGFRSLKEGEAVEFT 90
Score = 42 (19.8 bits), Expect = 3.9e-11, Sum P(2) = 3.9e-11
Identities = 7/11 (63%), Positives = 7/11 (63%)
Query: 120 CFNCGRTGHIA 130
CFNCG H A
Sbjct: 131 CFNCGGPNHHA 141
>TIGR_CMR|GSU_0207 [details] [associations]
symbol:GSU_0207 "cold-shock domain family protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
GO:GO:0003677 EMBL:AE017180 GenomeReviews:AE017180_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 HOGENOM:HOG000070674 KO:K03704
RefSeq:NP_951268.1 ProteinModelPortal:Q74GN9 SMR:Q74GN9
GeneID:2687733 KEGG:gsu:GSU0207 PATRIC:22023162 OMA:MSTITGN
BioCyc:GSUL243231:GH27-162-MONOMER Uniprot:Q74GN9
Length = 66
Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 29/56 (51%), Positives = 39/56 (69%)
Query: 8 SGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDG 63
+GTVKWF+ KGFGF+ E+G ED+FVH ++I GF++L+EG V F V G G
Sbjct: 3 NGTVKWFNDSKGFGFLEQENG-EDVFVHFSAINGNGFKSLAEGDRVTFEVTKGPKG 57
>UNIPROTKB|F1NS05 [details] [associations]
symbol:LIN28A "Protein lin-28 homolog A" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0010587 "miRNA
catabolic process" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0031054 "pre-miRNA processing"
evidence=IEA] [GO:0031123 "RNA 3'-end processing" evidence=IEA]
[GO:0031369 "translation initiation factor binding" evidence=IEA]
[GO:0035198 "miRNA binding" evidence=IEA] [GO:0045666 "positive
regulation of neuron differentiation" evidence=IEA] [GO:0045686
"negative regulation of glial cell differentiation" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0060964 "regulation of gene silencing by miRNA" evidence=IEA]
InterPro:IPR001878 InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050 PROSITE:PS50158
SMART:SM00343 SMART:SM00357 GO:GO:0005730 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0003729
GO:GO:0048863 GO:GO:0035198 GO:GO:0000932 GO:GO:0031054
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0045727 GO:GO:0010494
GeneTree:ENSGT00390000001177 IPI:IPI00573980 GO:GO:0010587
GO:GO:0031123 OMA:GVGVCKW EMBL:AADN02051390
Ensembl:ENSGALT00000000529 Uniprot:F1NS05
Length = 202
Score = 126 (49.4 bits), Expect = 6.3e-11, Sum P(2) = 6.3e-11
Identities = 27/63 (42%), Positives = 37/63 (58%)
Query: 8 SGTVKWFSAQKGFGFIA-PEDGGE------DLFVHQTSIKSEGFRTLSEGQTVEFSVDVG 60
SG KWF+ + GFGF++ GG D+FVHQ+ + EGFR+L EG+ VEF+
Sbjct: 35 SGICKWFNVRMGFGFLSMTAKGGAMLDSPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKS 94
Query: 61 EDG 63
G
Sbjct: 95 SKG 97
Score = 38 (18.4 bits), Expect = 6.3e-11, Sum P(2) = 6.3e-11
Identities = 6/11 (54%), Positives = 7/11 (63%)
Query: 120 CFNCGRTGHIA 130
C+NCG H A
Sbjct: 133 CYNCGGLDHHA 143
>UNIPROTKB|Q45KJ5 [details] [associations]
symbol:LIN28A "Protein lin-28 homolog A" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0010587 "miRNA
catabolic process" evidence=ISS] [GO:0019827 "stem cell
maintenance" evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0031054 "pre-miRNA processing" evidence=ISS]
[GO:0031123 "RNA 3'-end processing" evidence=ISS] [GO:0003723 "RNA
binding" evidence=ISS] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
InterPro:IPR001878 InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050 PROSITE:PS50158
SMART:SM00343 SMART:SM00357 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0003723
GO:GO:0000932 GO:GO:0031054 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 HSSP:Q9H9Z2 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0019827 GO:GO:0010494 EMBL:DQ127226 IPI:IPI00573980
RefSeq:NP_001026944.2 UniGene:Gga.21004 ProteinModelPortal:Q45KJ5
SMR:Q45KJ5 GeneID:428206 KEGG:gga:428206 CTD:79727 eggNOG:NOG244191
HOGENOM:HOG000047091 HOVERGEN:HBG081922 InParanoid:Q45KJ5
OrthoDB:EOG4640D4 NextBio:20829257 GO:GO:0010587 GO:GO:0031123
Uniprot:Q45KJ5
Length = 202
Score = 126 (49.4 bits), Expect = 6.3e-11, Sum P(2) = 6.3e-11
Identities = 27/63 (42%), Positives = 37/63 (58%)
Query: 8 SGTVKWFSAQKGFGFIA-PEDGGE------DLFVHQTSIKSEGFRTLSEGQTVEFSVDVG 60
SG KWF+ + GFGF++ GG D+FVHQ+ + EGFR+L EG+ VEF+
Sbjct: 35 SGICKWFNVRMGFGFLSMTAKGGAMLDSPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKS 94
Query: 61 EDG 63
G
Sbjct: 95 SKG 97
Score = 38 (18.4 bits), Expect = 6.3e-11, Sum P(2) = 6.3e-11
Identities = 6/11 (54%), Positives = 7/11 (63%)
Query: 120 CFNCGRTGHIA 130
C+NCG H A
Sbjct: 133 CYNCGGLDHHA 143
>UNIPROTKB|Q6ZN17 [details] [associations]
symbol:LIN28B "Protein lin-28 homolog B" species:9606 "Homo
sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IDA] [GO:0031054 "pre-miRNA processing"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0031123 "RNA 3'-end processing" evidence=IMP] [GO:0010587
"miRNA catabolic process" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA]
InterPro:IPR001878 InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050 PROSITE:PS50158
SMART:SM00343 SMART:SM00357 GO:GO:0005739 GO:GO:0005634
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 EMBL:CH471051
GO:GO:0008270 GO:GO:0003723 GO:GO:0031054 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 Gene3D:4.10.60.10
SUPFAM:SSF57756 eggNOG:COG1278 HOGENOM:HOG000047091
HOVERGEN:HBG081922 OrthoDB:EOG4640D4 GO:GO:0010587 GO:GO:0031123
CTD:389421 OMA:GGHGCTS EMBL:DQ127228 EMBL:AK131411 EMBL:Z95329
EMBL:AL135911 EMBL:BC127712 EMBL:BC127713 EMBL:BC137526
EMBL:BC137527 EMBL:BC141960 IPI:IPI00398131 IPI:IPI00854717
RefSeq:NP_001004317.1 UniGene:Hs.23616 PDB:4A4I PDBsum:4A4I
ProteinModelPortal:Q6ZN17 SMR:Q6ZN17 IntAct:Q6ZN17 STRING:Q6ZN17
PhosphoSite:Q6ZN17 DMDM:74758701 PaxDb:Q6ZN17 PeptideAtlas:Q6ZN17
PRIDE:Q6ZN17 Ensembl:ENST00000345080 GeneID:389421 KEGG:hsa:389421
UCSC:uc003pqv.1 GeneCards:GC06P105404 HGNC:HGNC:32207 HPA:HPA036630
MIM:611044 neXtProt:NX_Q6ZN17 PharmGKB:PA142671543
InParanoid:Q6ZN17 PhylomeDB:Q6ZN17 GenomeRNAi:389421 NextBio:102860
ArrayExpress:Q6ZN17 Bgee:Q6ZN17 CleanEx:HS_LIN28B
Genevestigator:Q6ZN17 GermOnline:ENSG00000187772 Uniprot:Q6ZN17
Length = 250
Score = 132 (51.5 bits), Expect = 6.6e-11, Sum P(2) = 6.6e-11
Identities = 29/69 (42%), Positives = 41/69 (59%)
Query: 2 AEVQRSSGTVKWFSAQKGFGFIA-------PEDGGEDLFVHQTSIKSEGFRTLSEGQTVE 54
++V R +G KWF+ + GFGFI+ P D D+FVHQ+ + EGFR+L EG+ VE
Sbjct: 25 SQVLRGTGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVE 84
Query: 55 FSVDVGEDG 63
F+ G
Sbjct: 85 FTFKKSSKG 93
Score = 38 (18.4 bits), Expect = 6.6e-11, Sum P(2) = 6.6e-11
Identities = 6/11 (54%), Positives = 7/11 (63%)
Query: 120 CFNCGRTGHIA 130
C+NCG H A
Sbjct: 129 CYNCGGLDHHA 139
>UNIPROTKB|D4A0Q1 [details] [associations]
symbol:Lin28b "Protein Lin28b" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001878
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313
PRINTS:PR00050 PROSITE:PS50158 SMART:SM00343 SMART:SM00357
RGD:1597432 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:4.10.60.10 SUPFAM:SSF57756 GeneTree:ENSGT00390000001177
CTD:389421 IPI:IPI00951319 RefSeq:XP_002725926.1
RefSeq:XP_002729027.1 Ensembl:ENSRNOT00000064466 GeneID:689054
KEGG:rno:689054 NextBio:737812 Uniprot:D4A0Q1
Length = 247
Score = 131 (51.2 bits), Expect = 7.9e-11, Sum P(2) = 7.9e-11
Identities = 28/62 (45%), Positives = 40/62 (64%)
Query: 2 AEVQRSSGTVKWFSAQKGFGFIA-------PEDGGEDLFVHQTSIKSEGFRTLSEGQTVE 54
++V R +G KWF+ + GFGFI+ P D D+FVHQ+ + EGFR+L EG+ VE
Sbjct: 23 SQVLRGTGHCKWFNVRMGFGFISMISREGNPLDIPVDVFVHQSKLFMEGFRSLKEGEPVE 82
Query: 55 FS 56
F+
Sbjct: 83 FT 84
Score = 38 (18.4 bits), Expect = 7.9e-11, Sum P(2) = 7.9e-11
Identities = 6/11 (54%), Positives = 7/11 (63%)
Query: 120 CFNCGRTGHIA 130
C+NCG H A
Sbjct: 127 CYNCGGLDHHA 137
>UNIPROTKB|F1NQ33 [details] [associations]
symbol:F1NQ33 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0006355 GO:GO:0003677
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 EMBL:AADN02037767
EMBL:AADN02037762 EMBL:AADN02037763 EMBL:AADN02037764
EMBL:AADN02037765 EMBL:AADN02037766 IPI:IPI00819532
Ensembl:ENSGALT00000037028 ArrayExpress:F1NQ33 Uniprot:F1NQ33
Length = 104
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 31/63 (49%), Positives = 40/63 (63%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDVGEDGR 64
GTVKWF+ + G+GFI D ED+FVHQT+IK R++ +G+TVEF V GE G
Sbjct: 6 GTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGA 65
Query: 65 TKA 67
A
Sbjct: 66 EAA 68
>UNIPROTKB|J9NV99 [details] [associations]
symbol:CSDA "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 EMBL:AAEX03015257
EMBL:AAEX03015256 Ensembl:ENSCAFT00000044569 Uniprot:J9NV99
Length = 217
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 31/63 (49%), Positives = 40/63 (63%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDVGEDGR 64
GTVKWF+ + G+GFI D ED+FVHQT+IK R++ +G+TVEF V GE G
Sbjct: 8 GTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGA 67
Query: 65 TKA 67
A
Sbjct: 68 EAA 70
>TIGR_CMR|BA_1629 [details] [associations]
symbol:BA_1629 "cold shock protein CspB" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 HOGENOM:HOG000070674 KO:K03704 OMA:ANVFRRN
HSSP:P41016 RefSeq:NP_844076.1 RefSeq:YP_018263.1
RefSeq:YP_027779.1 ProteinModelPortal:Q81SL9 SMR:Q81SL9
DNASU:1086132 EnsemblBacteria:EBBACT00000009010
EnsemblBacteria:EBBACT00000014540 EnsemblBacteria:EBBACT00000022883
GeneID:1086132 GeneID:2816052 GeneID:2848926 KEGG:ban:BA_1629
KEGG:bar:GBAA_1629 KEGG:bat:BAS1512 ProtClustDB:CLSK916304
BioCyc:BANT260799:GJAJ-1584-MONOMER
BioCyc:BANT261594:GJ7F-1650-MONOMER Uniprot:Q81SL9
Length = 65
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 28/55 (50%), Positives = 38/55 (69%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDG 63
G VKWF+ +KGFGFI E G +D+FVH ++I+ EG++ L EGQ V F + G G
Sbjct: 3 GKVKWFNNEKGFGFIEME-GADDVFVHFSAIQGEGYKALEEGQEVSFDITEGNRG 56
>TIGR_CMR|GSU_0191 [details] [associations]
symbol:GSU_0191 "cold-shock domain family protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
GO:GO:0003677 EMBL:AE017180 GenomeReviews:AE017180_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 HOGENOM:HOG000070674 KO:K03704
RefSeq:NP_951252.1 ProteinModelPortal:Q74GQ5 SMR:Q74GQ5
GeneID:2687816 KEGG:gsu:GSU0191 PATRIC:22023128 OMA:SVTFDVQ
ProtClustDB:CLSK827691 BioCyc:GSUL243231:GH27-130-MONOMER
Uniprot:Q74GQ5
Length = 66
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 30/66 (45%), Positives = 44/66 (66%)
Query: 8 SGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGRTKA 67
+GTVKWF+ KGFGF+ E+G ED+F H ++I +GF++L+EG V F + G G +A
Sbjct: 3 NGTVKWFNDSKGFGFLEQENG-EDVFCHFSAISGDGFKSLTEGDRVTFEITKGPKG-LQA 60
Query: 68 VDVEAA 73
+V A
Sbjct: 61 ANVTRA 66
>TIGR_CMR|CPS_0737 [details] [associations]
symbol:CPS_0737 "cold-shock DNA-binding domain family
protein" species:167879 "Colwellia psychrerythraea 34H" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 EMBL:CP000083
GenomeReviews:CP000083_GR Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR019844 eggNOG:COG1278
HOGENOM:HOG000070674 KO:K03704 RefSeq:YP_267487.1
ProteinModelPortal:Q488M7 SMR:Q488M7 GeneID:3518930
KEGG:cps:CPS_0737 PATRIC:21464787 OMA:PQAENVE
ProtClustDB:CLSK742412 BioCyc:CPSY167879:GI48-824-MONOMER
Uniprot:Q488M7
Length = 69
Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 29/56 (51%), Positives = 41/56 (73%)
Query: 8 SGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDG 63
+G VK+F+ KGFGFI E+G D+FVH ++I +GFRTL++GQ V F+V G+ G
Sbjct: 6 TGKVKFFNETKGFGFIEQENG-PDVFVHFSAISGDGFRTLADGQAVTFTVKQGQKG 60
>UNIPROTKB|F1NKY2 [details] [associations]
symbol:YBX1 "Nuclease-sensitive element-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00313 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR019844 GeneTree:ENSGT00390000009256
EMBL:AADN02073477 IPI:IPI00819706 Ensembl:ENSGALT00000039197
ArrayExpress:F1NKY2 Uniprot:F1NKY2
Length = 269
Score = 150 (57.9 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 31/63 (49%), Positives = 40/63 (63%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDVGEDGR 64
GTVKWF+ + G+GFI D ED+FVHQT+IK R++ +G+TVEF V GE G
Sbjct: 6 GTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGA 65
Query: 65 TKA 67
A
Sbjct: 66 EAA 68
>UNIPROTKB|F1NFC0 [details] [associations]
symbol:YBX1 "Nuclease-sensitive element-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00313 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR019844 GeneTree:ENSGT00390000009256
IPI:IPI00587895 EMBL:AADN02073477 Ensembl:ENSGALT00000007741
ArrayExpress:F1NFC0 Uniprot:F1NFC0
Length = 273
Score = 150 (57.9 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 31/63 (49%), Positives = 40/63 (63%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDVGEDGR 64
GTVKWF+ + G+GFI D ED+FVHQT+IK R++ +G+TVEF V GE G
Sbjct: 6 GTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGA 65
Query: 65 TKA 67
A
Sbjct: 66 EAA 68
>UNIPROTKB|F1LXN5 [details] [associations]
symbol:Csda "DNA-binding protein A" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 RGD:621056 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 IPI:IPI00951973 PRIDE:F1LXN5
Ensembl:ENSRNOT00000068352 ArrayExpress:F1LXN5 Uniprot:F1LXN5
Length = 273
Score = 150 (57.9 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 31/63 (49%), Positives = 40/63 (63%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDVGEDGR 64
GTVKWF+ + G+GFI D ED+FVHQT+IK R++ +G+TVEF V GE G
Sbjct: 68 GTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGA 127
Query: 65 TKA 67
A
Sbjct: 128 EAA 130
>UNIPROTKB|P45441 [details] [associations]
symbol:ybx2-b "Y-box-binding protein 2-B" species:8355
"Xenopus laevis" [GO:0030529 "ribonucleoprotein complex"
evidence=IPI] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0005737
GO:GO:0006417 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0003723 GO:GO:0030529 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR019844 HOVERGEN:HBG079361 EMBL:M80257
EMBL:BC155913 PIR:A41786 RefSeq:NP_001081167.1 UniGene:Xl.7706
ProteinModelPortal:P45441 SMR:P45441 PRIDE:P45441 GeneID:394429
KEGG:xla:394429 CTD:394429 Xenbase:XB-GENE-6254213 Uniprot:P45441
Length = 324
Score = 152 (58.6 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 31/63 (49%), Positives = 40/63 (63%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDVGEDGR 64
GTVKWF+ + G+GFI D ED+FVHQT+IK R++ +G+TVEF V GE G
Sbjct: 44 GTVKWFNVRNGYGFINRNDSKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEGEKGA 103
Query: 65 TKA 67
A
Sbjct: 104 EAA 106
>UNIPROTKB|F1LTA0 [details] [associations]
symbol:F1LTA0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 IPI:IPI00950360
Ensembl:ENSRNOT00000065381 ArrayExpress:F1LTA0 Uniprot:F1LTA0
Length = 236
Score = 147 (56.8 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 33/74 (44%), Positives = 47/74 (63%)
Query: 3 EVQRSS--GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG----FRTLSEGQTVEFS 56
+ Q+S G VKWF+ ++G+GFI D ED+FVHQT+IK R++ +G+TVEF
Sbjct: 21 QAQKSQVLGIVKWFNVRRGYGFINSNDTREDVFVHQTAIKKNKPRKYLRSVGDGETVEFE 80
Query: 57 VDVGEDGRTKAVDV 70
V GE G +A +V
Sbjct: 81 VVEGEKG-VEAANV 93
>ZFIN|ZDB-GENE-000629-3 [details] [associations]
symbol:ybx1 "Y box binding protein 1" species:7955
"Danio rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 ZFIN:ZDB-GENE-000629-3 GO:GO:0006355 GO:GO:0003677
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 HOVERGEN:HBG008757 EMBL:BC070000 IPI:IPI00837236
UniGene:Dr.59019 ProteinModelPortal:Q6NSP3 SMR:Q6NSP3
InParanoid:Q6NSP3 ArrayExpress:Q6NSP3 Uniprot:Q6NSP3
Length = 310
Score = 151 (58.2 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 31/63 (49%), Positives = 41/63 (65%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDVGEDGR 64
GTVKWF+ + G+GFI D ED+FVHQT+IK R++ +G+TVEF+V GE G
Sbjct: 41 GTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFAVVEGEKGA 100
Query: 65 TKA 67
A
Sbjct: 101 EAA 103
>UNIPROTKB|F1PF53 [details] [associations]
symbol:F1PF53 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 EMBL:AAEX03026423
EMBL:AAEX03026424 Ensembl:ENSCAFT00000026168 OMA:ERESDWQ
Uniprot:F1PF53
Length = 231
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 32/70 (45%), Positives = 46/70 (65%)
Query: 5 QRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDVG 60
+R G+VKWF+ + G+GFI+ D ED+FVHQT+I R++ +G+TVEF V G
Sbjct: 15 KRVRGSVKWFNVKNGYGFISRHDTQEDVFVHQTAITRNNPHKYQRSVGDGETVEFDVVQG 74
Query: 61 EDGRTKAVDV 70
E G T+A +V
Sbjct: 75 ERG-TEAANV 83
>UNIPROTKB|F1PF55 [details] [associations]
symbol:F1PF55 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 EMBL:AAEX03026423
EMBL:AAEX03026424 Ensembl:ENSCAFT00000026166 Uniprot:F1PF55
Length = 216
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 32/70 (45%), Positives = 46/70 (65%)
Query: 5 QRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDVG 60
+R G+VKWF+ + G+GFI+ D ED+FVHQT+I R++ +G+TVEF V G
Sbjct: 29 KRVRGSVKWFNVKNGYGFISRHDTQEDVFVHQTAITRNNPHKYQRSVGDGETVEFDVVQG 88
Query: 61 EDGRTKAVDV 70
E G T+A +V
Sbjct: 89 ERG-TEAANV 97
>TIGR_CMR|BA_1135 [details] [associations]
symbol:BA_1135 "cold shock protein CspA" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 RefSeq:NP_843619.1
RefSeq:YP_017753.1 RefSeq:YP_027326.1 ProteinModelPortal:Q81TW8
SMR:Q81TW8 DNASU:1086206 EnsemblBacteria:EBBACT00000011078
EnsemblBacteria:EBBACT00000018522 EnsemblBacteria:EBBACT00000023981
GeneID:1086206 GeneID:2816671 GeneID:2852366 KEGG:ban:BA_1135
KEGG:bar:GBAA_1135 KEGG:bat:BAS1054 HOGENOM:HOG000070674 KO:K03704
OMA:LNIKGHY ProtClustDB:CLSK916107
BioCyc:BANT260799:GJAJ-1130-MONOMER
BioCyc:BANT261594:GJ7F-1181-MONOMER Uniprot:Q81TW8
Length = 67
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 27/56 (48%), Positives = 40/56 (71%)
Query: 8 SGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDG 63
+G VKWF+ +KGFGFI G D+FVH ++I+++GF++L EGQ V F ++ G G
Sbjct: 4 TGQVKWFNNEKGFGFIEVP-GENDVFVHFSAIETDGFKSLEEGQKVSFEIEEGNRG 58
>UNIPROTKB|P21573 [details] [associations]
symbol:ybx1 "Nuclease-sensitive element-binding protein 1"
species:8355 "Xenopus laevis" [GO:0071204 "histone pre-mRNA 3'end
processing complex" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0006355 GO:GO:0008380
GO:GO:0003677 GO:GO:0006397 GO:GO:0006351 GO:GO:0003723
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 HOVERGEN:HBG008757 GO:GO:0071204 EMBL:M59453
PIR:A38274 UniGene:Xl.2633 ProteinModelPortal:P21573 SMR:P21573
PRIDE:P21573 Xenbase:XB-GENE-865405 Uniprot:P21573
Length = 303
Score = 150 (57.9 bits), Expect = 2.8e-10, P = 2.8e-10
Identities = 31/63 (49%), Positives = 40/63 (63%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDVGEDGR 64
GTVKWF+ + G+GFI D ED+FVHQT+IK R++ +G+TVEF V GE G
Sbjct: 39 GTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGA 98
Query: 65 TKA 67
A
Sbjct: 99 EAA 101
>UNIPROTKB|D4A0L4 [details] [associations]
symbol:Csda "DNA-binding protein A" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 RGD:621056 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 IPI:IPI00959307
Ensembl:ENSRNOT00000068185 ArrayExpress:D4A0L4 Uniprot:D4A0L4
Length = 306
Score = 150 (57.9 bits), Expect = 2.9e-10, P = 2.9e-10
Identities = 31/63 (49%), Positives = 40/63 (63%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDVGEDGR 64
GTVKWF+ + G+GFI D ED+FVHQT+IK R++ +G+TVEF V GE G
Sbjct: 85 GTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGA 144
Query: 65 TKA 67
A
Sbjct: 145 EAA 147
>UNIPROTKB|D4AAT9 [details] [associations]
symbol:Csda "DNA-binding protein A" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 RGD:621056 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 IPI:IPI00947719 Ensembl:ENSRNOT00000007347
ArrayExpress:D4AAT9 Uniprot:D4AAT9
Length = 308
Score = 150 (57.9 bits), Expect = 2.9e-10, P = 2.9e-10
Identities = 31/63 (49%), Positives = 40/63 (63%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDVGEDGR 64
GTVKWF+ + G+GFI D ED+FVHQT+IK R++ +G+TVEF V GE G
Sbjct: 85 GTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGA 144
Query: 65 TKA 67
A
Sbjct: 145 EAA 147
>UNIPROTKB|F1SQ46 [details] [associations]
symbol:CSDA "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0006355 GO:GO:0003677
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 KO:K06099 GeneTree:ENSGT00390000009256
EMBL:CU856689 RefSeq:XP_003355623.1 UniGene:Ssc.9655
Ensembl:ENSSSCT00000000680 GeneID:100518125 KEGG:ssc:100518125
Uniprot:F1SQ46
Length = 312
Score = 150 (57.9 bits), Expect = 3.0e-10, P = 3.0e-10
Identities = 31/63 (49%), Positives = 40/63 (63%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDVGEDGR 64
GTVKWF+ + G+GFI D ED+FVHQT+IK R++ +G+TVEF V GE G
Sbjct: 102 GTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGA 161
Query: 65 TKA 67
A
Sbjct: 162 EAA 164
>UNIPROTKB|J9NTE1 [details] [associations]
symbol:CSDA "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 EMBL:AAEX03015257
EMBL:AAEX03015256 Ensembl:ENSCAFT00000048154 Uniprot:J9NTE1
Length = 314
Score = 150 (57.9 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 31/63 (49%), Positives = 40/63 (63%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDVGEDGR 64
GTVKWF+ + G+GFI D ED+FVHQT+IK R++ +G+TVEF V GE G
Sbjct: 25 GTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGA 84
Query: 65 TKA 67
A
Sbjct: 85 EAA 87
>UNIPROTKB|Q06066 [details] [associations]
symbol:YBX1 "Nuclease-sensitive element-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0005737
GO:GO:0006355 GO:GO:0008380 GO:GO:0003677 GO:GO:0006397
GO:GO:0006351 GO:GO:0003723 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR019844 HOGENOM:HOG000116439
HOVERGEN:HBG008757 OrthoDB:EOG46DM3W GO:GO:0071204 EMBL:L13032
IPI:IPI00587895 PIR:A48136 UniGene:Gga.4145
ProteinModelPortal:Q06066 SMR:Q06066 STRING:Q06066 PRIDE:Q06066
eggNOG:NOG326255 ArrayExpress:Q06066 Uniprot:Q06066
Length = 321
Score = 150 (57.9 bits), Expect = 3.3e-10, P = 3.3e-10
Identities = 31/63 (49%), Positives = 40/63 (63%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDVGEDGR 64
GTVKWF+ + G+GFI D ED+FVHQT+IK R++ +G+TVEF V GE G
Sbjct: 58 GTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGA 117
Query: 65 TKA 67
A
Sbjct: 118 EAA 120
>MGI|MGI:99146 [details] [associations]
symbol:Ybx1 "Y box protein 1" species:10090 "Mus musculus"
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IGI;ISO;IDA] [GO:0001701 "in utero
embryonic development" evidence=IGI;IMP] [GO:0002039 "p53 binding"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=ISO;IDA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005576
"extracellular region" evidence=IEA] [GO:0005634 "nucleus"
evidence=IGI;ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=ISO] [GO:0008284 "positive
regulation of cell proliferation" evidence=ISO] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=ISO] [GO:0030425 "dendrite" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0043066 "negative
regulation of apoptotic process" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0046627 "negative regulation of insulin receptor
signaling pathway" evidence=ISO] [GO:0048471 "perinuclear region of
cytoplasm" evidence=ISO] [GO:0051154 "negative regulation of
striated muscle cell differentiation" evidence=IDA] [GO:0051781
"positive regulation of cell division" evidence=IEA] [GO:0070934
"CRD-mediated mRNA stabilization" evidence=ISO] [GO:0070937
"CRD-mediated mRNA stability complex" evidence=ISO] [GO:0071204
"histone pre-mRNA 3'end processing complex" evidence=IDA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 MGI:MGI:99146 GO:GO:0005576
GO:GO:0008380 GO:GO:0051781 GO:GO:0001701 GO:GO:0006397
GO:GO:0006351 GO:GO:0003723 GO:GO:0000122 GO:GO:0003697
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0010494
InterPro:IPR019844 eggNOG:COG1278 HOGENOM:HOG000116439
HOVERGEN:HBG008757 OrthoDB:EOG46DM3W GO:GO:0005689 GO:GO:0070937
GO:GO:0070934 GO:GO:0071204 GO:GO:0051154 CTD:4904 KO:K09276
OMA:VEGADNQ EMBL:M60419 EMBL:M62867 EMBL:X57621 EMBL:BC013450
EMBL:BC013620 EMBL:BC029747 EMBL:BC031472 EMBL:BC061634
IPI:IPI00120886 PIR:I58195 RefSeq:NP_035862.2 UniGene:Mm.258204
ProteinModelPortal:P62960 SMR:P62960 DIP:DIP-34256N IntAct:P62960
MINT:MINT-1212991 STRING:P62960 PhosphoSite:P62960 PaxDb:P62960
PRIDE:P62960 Ensembl:ENSMUST00000079644 GeneID:22608 KEGG:mmu:22608
InParanoid:P62960 ChiTaRS:YBX1 NextBio:302963 Bgee:P62960
CleanEx:MM_YBX1 Genevestigator:P62960 GermOnline:ENSMUSG00000028639
Uniprot:P62960
Length = 322
Score = 150 (57.9 bits), Expect = 3.3e-10, P = 3.3e-10
Identities = 31/63 (49%), Positives = 40/63 (63%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDVGEDGR 64
GTVKWF+ + G+GFI D ED+FVHQT+IK R++ +G+TVEF V GE G
Sbjct: 59 GTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGA 118
Query: 65 TKA 67
A
Sbjct: 119 EAA 121
>RGD|61843 [details] [associations]
symbol:Ybx1 "Y box binding protein 1" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=ISO;IDA] [GO:0001701 "in utero
embryonic development" evidence=ISO] [GO:0002039 "p53 binding"
evidence=IMP] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=ISO;IDA] [GO:0003723 "RNA
binding" evidence=ISO;ISS] [GO:0003729 "mRNA binding" evidence=IPI]
[GO:0005576 "extracellular region" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005689 "U12-type spliceosomal
complex" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IPI] [GO:0008284 "positive
regulation of cell proliferation" evidence=IMP] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=ISO;ISS] [GO:0030425 "dendrite" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0043066 "negative
regulation of apoptotic process" evidence=IDA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0046627 "negative regulation of insulin receptor
signaling pathway" evidence=IMP] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IDA] [GO:0051154 "negative regulation of
striated muscle cell differentiation" evidence=ISO] [GO:0051781
"positive regulation of cell division" evidence=IEA] [GO:0070934
"CRD-mediated mRNA stabilization" evidence=ISO;ISS] [GO:0070937
"CRD-mediated mRNA stability complex" evidence=ISO] [GO:0071204
"histone pre-mRNA 3'end processing complex" evidence=ISO;ISS]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 RGD:61843 GO:GO:0048471 GO:GO:0043066
GO:GO:0005576 GO:GO:0008380 GO:GO:0008284 GO:GO:0051781
GO:GO:0030425 GO:GO:0043565 GO:GO:0003729 GO:GO:0006397
GO:GO:0045944 GO:GO:0006351 GO:GO:0000122 GO:GO:0003697
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0046627
GO:GO:0010494 GO:GO:0002039 InterPro:IPR019844 eggNOG:COG1278
HOGENOM:HOG000116439 HOVERGEN:HBG008757 OrthoDB:EOG46DM3W
GO:GO:0070934 GO:GO:0071204 CTD:4904 KO:K09276 EMBL:M57299
EMBL:M69138 EMBL:D13309 EMBL:BC072486 EMBL:BC098672 IPI:IPI00551815
PIR:A23677 RefSeq:NP_113751.3 UniGene:Rn.110976 UniGene:Rn.194909
ProteinModelPortal:P62961 SMR:P62961 IntAct:P62961
PhosphoSite:P62961 PRIDE:P62961 GeneID:500538 KEGG:rno:500538
UCSC:RGD:61843 InParanoid:P62961 NextBio:706472 ArrayExpress:P62961
Genevestigator:P62961 GermOnline:ENSRNOG00000032902 Uniprot:P62961
Length = 322
Score = 150 (57.9 bits), Expect = 3.3e-10, P = 3.3e-10
Identities = 31/63 (49%), Positives = 40/63 (63%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDVGEDGR 64
GTVKWF+ + G+GFI D ED+FVHQT+IK R++ +G+TVEF V GE G
Sbjct: 59 GTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGA 118
Query: 65 TKA 67
A
Sbjct: 119 EAA 121
>RGD|6486912 [details] [associations]
symbol:LOC100912427 "nuclease-sensitive element-binding protein
1-like" species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00313 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
RGD:6486912 GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844
GeneTree:ENSGT00390000009256 OMA:VEGADNQ IPI:IPI00568666
RefSeq:XP_003749029.1 Ensembl:ENSRNOT00000058700 GeneID:100912427
KEGG:rno:100912427 ArrayExpress:F1LPL7 Uniprot:F1LPL7
Length = 322
Score = 150 (57.9 bits), Expect = 3.3e-10, P = 3.3e-10
Identities = 31/63 (49%), Positives = 40/63 (63%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDVGEDGR 64
GTVKWF+ + G+GFI D ED+FVHQT+IK R++ +G+TVEF V GE G
Sbjct: 59 GTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGA 118
Query: 65 TKA 67
A
Sbjct: 119 EAA 121
>UNIPROTKB|F1MZ92 [details] [associations]
symbol:YBX1 "Nuclease-sensitive element-binding protein 1"
species:9913 "Bos taurus" [GO:0071204 "histone pre-mRNA 3'end
processing complex" evidence=IEA] [GO:0070937 "CRD-mediated mRNA
stability complex" evidence=IEA] [GO:0070934 "CRD-mediated mRNA
stabilization" evidence=IEA] [GO:0051154 "negative regulation of
striated muscle cell differentiation" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] [GO:0003697 "single-stranded
DNA binding" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0001701 GO:GO:0000122
GO:GO:0003697 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0010494 InterPro:IPR019844 GeneTree:ENSGT00390000009256
GO:GO:0005689 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204
GO:GO:0051154 IPI:IPI00689440 OMA:VEGADNQ EMBL:DAAA02009073
EMBL:DAAA02009074 EMBL:DAAA02009075 Ensembl:ENSBTAT00000023094
ArrayExpress:F1MZ92 Uniprot:F1MZ92
Length = 324
Score = 150 (57.9 bits), Expect = 3.4e-10, P = 3.4e-10
Identities = 31/63 (49%), Positives = 40/63 (63%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDVGEDGR 64
GTVKWF+ + G+GFI D ED+FVHQT+IK R++ +G+TVEF V GE G
Sbjct: 61 GTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGA 120
Query: 65 TKA 67
A
Sbjct: 121 EAA 123
>UNIPROTKB|P67808 [details] [associations]
symbol:YBX1 "Nuclease-sensitive element-binding protein 1"
species:9913 "Bos taurus" [GO:0003697 "single-stranded DNA binding"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0070934
"CRD-mediated mRNA stabilization" evidence=ISS] [GO:0010494
"cytoplasmic stress granule" evidence=ISS] [GO:0071204 "histone
pre-mRNA 3'end processing complex" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0005576
"extracellular region" evidence=IEA] [GO:0051781 "positive
regulation of cell division" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0005576
GO:GO:0006355 GO:GO:0008380 GO:GO:0051781 GO:GO:0006397
GO:GO:0006351 GO:GO:0003723 GO:GO:0003697 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0010494 InterPro:IPR019844
eggNOG:COG1278 HOGENOM:HOG000116439 HOVERGEN:HBG008757
OrthoDB:EOG46DM3W GO:GO:0070934 GO:GO:0071204 EMBL:M95793
EMBL:BC105363 IPI:IPI00689440 PIR:I39382 PIR:JQ2292
RefSeq:NP_777240.1 UniGene:Bt.5332 ProteinModelPortal:P67808
SMR:P67808 STRING:P67808 PRIDE:P67808 GeneID:287023 KEGG:bta:287023
CTD:4904 InParanoid:P67808 KO:K09276 NextBio:20806545
Uniprot:P67808
Length = 324
Score = 150 (57.9 bits), Expect = 3.4e-10, P = 3.4e-10
Identities = 31/63 (49%), Positives = 40/63 (63%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDVGEDGR 64
GTVKWF+ + G+GFI D ED+FVHQT+IK R++ +G+TVEF V GE G
Sbjct: 61 GTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGA 120
Query: 65 TKA 67
A
Sbjct: 121 EAA 123
>UNIPROTKB|P67809 [details] [associations]
symbol:YBX1 "Nuclease-sensitive element-binding protein 1"
species:9606 "Homo sapiens" [GO:0051781 "positive regulation of
cell division" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0051154
"negative regulation of striated muscle cell differentiation"
evidence=IEA] [GO:0005576 "extracellular region" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IDA;TAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IDA;NAS] [GO:0045892 "negative regulation
of transcription, DNA-dependent" evidence=NAS] [GO:0003723 "RNA
binding" evidence=IDA;NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005689 "U12-type spliceosomal complex"
evidence=IDA] [GO:0071204 "histone pre-mRNA 3'end processing
complex" evidence=ISS] [GO:0070937 "CRD-mediated mRNA stability
complex" evidence=IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=TAS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=TAS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0043231 "intracellular membrane-bounded organelle"
evidence=IDA] Reactome:REACT_71 InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0045892 GO:GO:0005576 GO:GO:0005654
GO:GO:0051781 GO:GO:0001701 Reactome:REACT_1675 GO:GO:0003700
GO:GO:0003723 GO:GO:0000122 GO:GO:0006366 GO:GO:0003690
GO:GO:0003697 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Pathway_Interaction_DB:ptp1bpathway GO:GO:0000398 GO:GO:0010494
InterPro:IPR019844 eggNOG:COG1278 HOGENOM:HOG000116439
HOVERGEN:HBG008757 OrthoDB:EOG46DM3W GO:GO:0005689 GO:GO:0070937
GO:GO:0070934 GO:GO:0071204 GO:GO:0051154 PIR:I39382 CTD:4904
KO:K09276 EMBL:M24070 EMBL:J03827 EMBL:M83234 EMBL:L28809
EMBL:BC002411 EMBL:BC010430 EMBL:BC015208 EMBL:BC038384
EMBL:BC065571 EMBL:BC070084 EMBL:BC071708 EMBL:BC090038
EMBL:BC098435 EMBL:BC106045 IPI:IPI00031812 PIR:S34426
RefSeq:NP_004550.2 UniGene:Hs.473583 PDB:1H95 PDBsum:1H95
ProteinModelPortal:P67809 SMR:P67809 DIP:DIP-29405N IntAct:P67809
MINT:MINT-5001202 STRING:P67809 PhosphoSite:P67809 DMDM:54040031
PaxDb:P67809 PRIDE:P67809 DNASU:4904 Ensembl:ENST00000321358
GeneID:4904 KEGG:hsa:4904 UCSC:uc001chs.3 GeneCards:GC01P043148
H-InvDB:HIX0037767 H-InvDB:HIX0172381 HGNC:HGNC:8014 HPA:CAB005875
HPA:HPA040304 MIM:154030 neXtProt:NX_P67809 PharmGKB:PA31791
InParanoid:P67809 OMA:VEGADNQ PhylomeDB:P67809
EvolutionaryTrace:P67809 GenomeRNAi:4904 NextBio:18871
PMAP-CutDB:P67809 ArrayExpress:P67809 Bgee:P67809 CleanEx:HS_YBX1
Genevestigator:P67809 GermOnline:ENSG00000065978 Uniprot:P67809
Length = 324
Score = 150 (57.9 bits), Expect = 3.4e-10, P = 3.4e-10
Identities = 31/63 (49%), Positives = 40/63 (63%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDVGEDGR 64
GTVKWF+ + G+GFI D ED+FVHQT+IK R++ +G+TVEF V GE G
Sbjct: 61 GTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGA 120
Query: 65 TKA 67
A
Sbjct: 121 EAA 123
>UNIPROTKB|Q28618 [details] [associations]
symbol:YBX1 "Nuclease-sensitive element-binding protein 1"
species:9986 "Oryctolagus cuniculus" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0030529 "ribonucleoprotein complex" evidence=ISS]
[GO:0070934 "CRD-mediated mRNA stabilization" evidence=ISS]
[GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0005576
GO:GO:0006355 GO:GO:0008380 GO:GO:0003677 GO:GO:0051781
GO:GO:0006397 GO:GO:0006351 GO:GO:0003723 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0010494 InterPro:IPR019844
HOGENOM:HOG000116439 HOVERGEN:HBG008757 OrthoDB:EOG46DM3W
GO:GO:0070934 GO:GO:0071204 CTD:4904 eggNOG:NOG326255 EMBL:U16821
PIR:A55971 RefSeq:NP_001076254.1 UniGene:Ocu.6201
ProteinModelPortal:Q28618 SMR:Q28618 GeneID:100009583
Uniprot:Q28618
Length = 324
Score = 150 (57.9 bits), Expect = 3.4e-10, P = 3.4e-10
Identities = 31/63 (49%), Positives = 40/63 (63%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDVGEDGR 64
GTVKWF+ + G+GFI D ED+FVHQT+IK R++ +G+TVEF V GE G
Sbjct: 61 GTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGA 120
Query: 65 TKA 67
A
Sbjct: 121 EAA 123
>UNIPROTKB|F1RYQ5 [details] [associations]
symbol:F1RYQ5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0031123 "RNA 3'-end processing" evidence=IEA]
[GO:0031054 "pre-miRNA processing" evidence=IEA] [GO:0010587 "miRNA
catabolic process" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001878 InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00313 PRINTS:PR00050 PROSITE:PS50158 SMART:SM00343
SMART:SM00357 GO:GO:0005739 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0008270 GO:GO:0003723 GO:GO:0031054
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:4.10.60.10 SUPFAM:SSF57756 GeneTree:ENSGT00390000001177
GO:GO:0010587 GO:GO:0031123 OMA:GGHGCTS EMBL:CU407220 EMBL:CU074276
EMBL:JF913470 Ensembl:ENSSSCT00000004824 Uniprot:F1RYQ5
Length = 263
Score = 127 (49.8 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 28/69 (40%), Positives = 40/69 (57%)
Query: 2 AEVQRSSGTVKWFSAQKGFGFIA-------PEDGGEDLFVHQTSIKSEGFRTLSEGQTVE 54
++V +G KWF+ + GFGFI+ P D D+FVHQ+ + EGFR+L EG+ VE
Sbjct: 38 SQVLHGTGHCKWFNVRMGFGFISMISREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVE 97
Query: 55 FSVDVGEDG 63
F+ G
Sbjct: 98 FTFKKSSKG 106
Score = 38 (18.4 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 6/11 (54%), Positives = 7/11 (63%)
Query: 120 CFNCGRTGHIA 130
C+NCG H A
Sbjct: 142 CYNCGGLDHHA 152
>UNIPROTKB|F1P7H7 [details] [associations]
symbol:LIN28B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001878 InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050 PROSITE:PS50158
SMART:SM00343 SMART:SM00357 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 Gene3D:4.10.60.10 SUPFAM:SSF57756
GeneTree:ENSGT00390000001177 CTD:389421 OMA:GGHGCTS
EMBL:AAEX03008576 RefSeq:XP_539064.2 ProteinModelPortal:F1P7H7
Ensembl:ENSCAFT00000005790 GeneID:481943 KEGG:cfa:481943
Uniprot:F1P7H7
Length = 251
Score = 126 (49.4 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 27/69 (39%), Positives = 40/69 (57%)
Query: 2 AEVQRSSGTVKWFSAQKGFGFIA-------PEDGGEDLFVHQTSIKSEGFRTLSEGQTVE 54
+++ +G KWF+ + GFGFI+ P D D+FVHQ+ + EGFR+L EG+ VE
Sbjct: 24 SQILHGTGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVE 83
Query: 55 FSVDVGEDG 63
F+ G
Sbjct: 84 FTFKKSSKG 92
Score = 38 (18.4 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 6/11 (54%), Positives = 7/11 (63%)
Query: 120 CFNCGRTGHIA 130
C+NCG H A
Sbjct: 128 CYNCGGLDHHA 138
>UNIPROTKB|P21574 [details] [associations]
symbol:ybx2-a "Y-box-binding protein 2-A" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IPI] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0045893
GO:GO:0043565 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 HOVERGEN:HBG079361 EMBL:M59454 EMBL:BC155914
EMBL:BC169704 EMBL:BC169706 PIR:B38274 RefSeq:NP_001081274.1
UniGene:Xl.787 ProteinModelPortal:P21574 PRIDE:P21574 GeneID:397746
KEGG:xla:397746 CTD:397746 Xenbase:XB-GENE-6252609 Uniprot:P21574
Length = 336
Score = 150 (57.9 bits), Expect = 3.7e-10, P = 3.7e-10
Identities = 31/63 (49%), Positives = 40/63 (63%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDVGEDGR 64
GTVKWF+ + G+GFI D ED+FVHQT+IK R++ +G+TVEF V GE G
Sbjct: 44 GTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEGEKGA 103
Query: 65 TKA 67
A
Sbjct: 104 EAA 106
>MGI|MGI:3584032 [details] [associations]
symbol:Lin28b "lin-28 homolog B (C. elegans)" species:10090
"Mus musculus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0010587 "miRNA catabolic process" evidence=ISO]
[GO:0031047 "gene silencing by RNA" evidence=IEA] [GO:0031054
"pre-miRNA processing" evidence=ISO] [GO:0031123 "RNA 3'-end
processing" evidence=ISO] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001878 InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050
PROSITE:PS50158 SMART:SM00343 SMART:SM00357 MGI:MGI:3584032
GO:GO:0005739 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0003723 GO:GO:0031054
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 HSSP:Q9H9Z2
Gene3D:4.10.60.10 SUPFAM:SSF57756 eggNOG:COG1278 EMBL:AC153847
GeneTree:ENSGT00390000001177 HOGENOM:HOG000047091
HOVERGEN:HBG081922 OrthoDB:EOG4640D4 GO:GO:0010587 GO:GO:0031123
CTD:389421 OMA:GGHGCTS EMBL:DQ127225 EMBL:AK133928 EMBL:AK012973
EMBL:AC155715 EMBL:BC089037 IPI:IPI00380861 IPI:IPI00652406
IPI:IPI00652717 IPI:IPI00798608 RefSeq:NP_001026942.1
UniGene:Mm.440328 ProteinModelPortal:Q45KJ6 SMR:Q45KJ6
DIP:DIP-48572N STRING:Q45KJ6 PhosphoSite:Q45KJ6 PRIDE:Q45KJ6
Ensembl:ENSMUST00000079390 GeneID:380669 KEGG:mmu:380669
UCSC:uc007faa.2 UCSC:uc007fab.1 NextBio:401084 Bgee:Q45KJ6
CleanEx:MM_LIN28B Genevestigator:Q45KJ6
GermOnline:ENSMUSG00000063804 Uniprot:Q45KJ6
Length = 247
Score = 125 (49.1 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 27/61 (44%), Positives = 38/61 (62%)
Query: 3 EVQRSSGTVKWFSAQKGFGFIA-------PEDGGEDLFVHQTSIKSEGFRTLSEGQTVEF 55
+V +G KWF+ + GFGFI+ P D D+FVHQ+ + EGFR+L EG+ VEF
Sbjct: 24 QVLHGTGHCKWFNVRMGFGFISMISREGNPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEF 83
Query: 56 S 56
+
Sbjct: 84 T 84
Score = 38 (18.4 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 6/11 (54%), Positives = 7/11 (63%)
Query: 120 CFNCGRTGHIA 130
C+NCG H A
Sbjct: 127 CYNCGGLDHHA 137
>UNIPROTKB|E2R1A0 [details] [associations]
symbol:YBX1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 EMBL:AAEX03009523
EMBL:AAEX03009522 ProteinModelPortal:E2R1A0 PRIDE:E2R1A0
Ensembl:ENSCAFT00000004010 OMA:EGNESAP NextBio:20892779
Uniprot:E2R1A0
Length = 359
Score = 150 (57.9 bits), Expect = 4.4e-10, P = 4.4e-10
Identities = 31/63 (49%), Positives = 40/63 (63%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDVGEDGR 64
GTVKWF+ + G+GFI D ED+FVHQT+IK R++ +G+TVEF V GE G
Sbjct: 96 GTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGA 155
Query: 65 TKA 67
A
Sbjct: 156 EAA 158
>MGI|MGI:1096372 [details] [associations]
symbol:Ybx2 "Y box protein 2" species:10090 "Mus musculus"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO;IDA] [GO:0005844 "polysome" evidence=IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IMP]
[GO:0008289 "lipid binding" evidence=IDA] [GO:0017148 "negative
regulation of translation" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0043021
"ribonucleoprotein complex binding" evidence=IDA] [GO:0045182
"translation regulator activity" evidence=IDA] [GO:0048255 "mRNA
stabilization" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP]
[GO:0051100 "negative regulation of binding" evidence=IMP]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 MGI:MGI:1096372 GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0007286 GO:GO:0017148
GO:GO:0003677 GO:GO:0048477 GO:GO:0003682 GO:GO:0045182
GO:GO:0048255 EMBL:AL596185 GO:GO:0008289 GO:GO:0003730
GO:GO:0005844 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0043021 InterPro:IPR019844 GO:GO:0051100 eggNOG:COG1278
HOGENOM:HOG000116439 OrthoDB:EOG46DM3W GeneTree:ENSGT00390000009256
CTD:51087 HOVERGEN:HBG079361 KO:K09277 ChiTaRS:YBX2 EMBL:AF073954
EMBL:AF073955 IPI:IPI00131034 IPI:IPI00553286 RefSeq:NP_058571.2
UniGene:Mm.29286 ProteinModelPortal:Q9Z2C8 SMR:Q9Z2C8
DIP:DIP-59783N STRING:Q9Z2C8 PhosphoSite:Q9Z2C8
REPRODUCTION-2DPAGE:Q9Z2C8 PaxDb:Q9Z2C8 PRIDE:Q9Z2C8
Ensembl:ENSMUST00000108601 GeneID:53422 KEGG:mmu:53422
InParanoid:Q9Z2C8 NextBio:310261 Bgee:Q9Z2C8 CleanEx:MM_YBX2
Genevestigator:Q9Z2C8 GermOnline:ENSMUSG00000018554 Uniprot:Q9Z2C8
Length = 360
Score = 150 (57.9 bits), Expect = 4.4e-10, P = 4.4e-10
Identities = 32/66 (48%), Positives = 43/66 (65%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDVGEDGR 64
GTVKWF+ + G+GFI D ED+FVHQT+IK R++ +G+TVEF V GE G
Sbjct: 98 GTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKG- 156
Query: 65 TKAVDV 70
+A +V
Sbjct: 157 ARAANV 162
>MGI|MGI:2137670 [details] [associations]
symbol:Ybx3 "Y box protein 3" species:10090 "Mus musculus"
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0001701 "in utero
embryonic development" evidence=IGI] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003697 "single-stranded DNA binding" evidence=ISO;IDA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005844 "polysome" evidence=IDA] [GO:0005921 "gap
junction" evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IMP] [GO:0008584 "male gonad development" evidence=IMP]
[GO:0009566 "fertilization" evidence=IMP] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IMP] [GO:0046622
"positive regulation of organ growth" evidence=IMP] [GO:0048642
"negative regulation of skeletal muscle tissue development"
evidence=IDA] [GO:0060547 "negative regulation of necrotic cell
death" evidence=ISO] [GO:0071356 "cellular response to tumor
necrosis factor" evidence=ISO] [GO:0071474 "cellular hyperosmotic
response" evidence=ISO] InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00313 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
MGI:MGI:2137670 GO:GO:0005634 GO:GO:0005737 GO:GO:0043066
GO:GO:0003677 GO:GO:0031100 GO:GO:0001701 GO:GO:0009566
GO:GO:0007283 GO:GO:0006351 GO:GO:0003723 GO:GO:0008584
GO:GO:0000122 GO:GO:0003730 GO:GO:0003697 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0046622 GO:GO:0005921
InterPro:IPR019844 eggNOG:COG1278 CTD:8531 HOGENOM:HOG000116439
HOVERGEN:HBG008757 KO:K06099 OMA:ENQQATS ChiTaRS:CSDA GO:GO:0048642
EMBL:AF246224 EMBL:AF248546 EMBL:AF248547 EMBL:BC048242
EMBL:BC062377 IPI:IPI00274739 IPI:IPI00330591 RefSeq:NP_035863.1
RefSeq:NP_620817.2 UniGene:Mm.458000 ProteinModelPortal:Q9JKB3
SMR:Q9JKB3 DIP:DIP-42746N IntAct:Q9JKB3 MINT:MINT-1891951
STRING:Q9JKB3 PhosphoSite:Q9JKB3 PaxDb:Q9JKB3 PRIDE:Q9JKB3
Ensembl:ENSMUST00000032309 Ensembl:ENSMUST00000087865 GeneID:56449
KEGG:mmu:56449 UCSC:uc009eit.1 GeneTree:ENSGT00390000009256
InParanoid:Q9JKB3 NextBio:312662 Bgee:Q9JKB3 CleanEx:MM_CSDA
Genevestigator:Q9JKB3 GermOnline:ENSMUSG00000030189 Uniprot:Q9JKB3
Length = 361
Score = 150 (57.9 bits), Expect = 4.4e-10, P = 4.4e-10
Identities = 31/63 (49%), Positives = 40/63 (63%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDVGEDGR 64
GTVKWF+ + G+GFI D ED+FVHQT+IK R++ +G+TVEF V GE G
Sbjct: 85 GTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGA 144
Query: 65 TKA 67
A
Sbjct: 145 EAA 147
>RGD|621056 [details] [associations]
symbol:Ybx3 "Y box binding protein 3" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IMP] [GO:0001701 "in utero
embryonic development" evidence=ISO] [GO:0003677 "DNA binding"
evidence=ISO] [GO:0003697 "single-stranded DNA binding"
evidence=ISO;IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0005921 "gap junction" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEP;ISO] [GO:0008584 "male
gonad development" evidence=ISO] [GO:0009566 "fertilization"
evidence=ISO] [GO:0031100 "organ regeneration" evidence=IEP]
[GO:0043066 "negative regulation of apoptotic process"
evidence=ISO] [GO:0046622 "positive regulation of organ growth"
evidence=ISO] [GO:0048642 "negative regulation of skeletal muscle
tissue development" evidence=ISO] [GO:0060547 "negative regulation
of necrotic cell death" evidence=ISO] [GO:0071356 "cellular
response to tumor necrosis factor" evidence=ISO] [GO:0071474
"cellular hyperosmotic response" evidence=ISO] [GO:0005844
"polysome" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 RGD:621056
GO:GO:0005634 GO:GO:0005737 GO:GO:0043066 GO:GO:0031100
GO:GO:0001701 GO:GO:0009566 GO:GO:0007283 GO:GO:0006351
GO:GO:0008584 GO:GO:0000122 GO:GO:0003730 GO:GO:0003697
GO:GO:0005844 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0046622 GO:GO:0005921 InterPro:IPR019844 eggNOG:COG1278
CTD:8531 HOGENOM:HOG000116439 HOVERGEN:HBG008757 KO:K06099
GO:GO:0048642 EMBL:U22893 EMBL:D28557 IPI:IPI00208217
IPI:IPI00231811 PIR:S51608 RefSeq:NP_114185.3 UniGene:Rn.3306
ProteinModelPortal:Q62764 SMR:Q62764 IntAct:Q62764
MINT:MINT-4597726 STRING:Q62764 PhosphoSite:Q62764 PRIDE:Q62764
GeneID:83807 KEGG:rno:83807 UCSC:RGD:621056 InParanoid:Q62764
ArrayExpress:Q62764 Genevestigator:Q62764
GermOnline:ENSRNOG00000005480 Uniprot:Q62764
Length = 361
Score = 150 (57.9 bits), Expect = 4.4e-10, P = 4.4e-10
Identities = 31/63 (49%), Positives = 40/63 (63%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDVGEDGR 64
GTVKWF+ + G+GFI D ED+FVHQT+IK R++ +G+TVEF V GE G
Sbjct: 85 GTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGA 144
Query: 65 TKA 67
A
Sbjct: 145 EAA 147
>UNIPROTKB|F1MA18 [details] [associations]
symbol:Csda "DNA-binding protein A" species:10116 "Rattus
norvegicus" [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008584 "male gonad development"
evidence=IEA] [GO:0009566 "fertilization" evidence=IEA] [GO:0043066
"negative regulation of apoptotic process" evidence=IEA]
[GO:0046622 "positive regulation of organ growth" evidence=IEA]
[GO:0048642 "negative regulation of skeletal muscle tissue
development" evidence=IEA] InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00313 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
RGD:621056 GO:GO:0005634 GO:GO:0005737 GO:GO:0043066 GO:GO:0006355
GO:GO:0003677 GO:GO:0001701 GO:GO:0009566 GO:GO:0007283
GO:GO:0008584 GO:GO:0003730 GO:GO:0005844 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0046622 InterPro:IPR019844
OMA:ENQQATS GO:GO:0048642 GeneTree:ENSGT00390000009256
IPI:IPI01016461 Ensembl:ENSRNOT00000007427 ArrayExpress:F1MA18
Uniprot:F1MA18
Length = 361
Score = 150 (57.9 bits), Expect = 4.4e-10, P = 4.4e-10
Identities = 31/63 (49%), Positives = 40/63 (63%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDVGEDGR 64
GTVKWF+ + G+GFI D ED+FVHQT+IK R++ +G+TVEF V GE G
Sbjct: 85 GTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGA 144
Query: 65 TKA 67
A
Sbjct: 145 EAA 147
>UNIPROTKB|F1M1Q9 [details] [associations]
symbol:F1M1Q9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 IPI:IPI00949180
Ensembl:ENSRNOT00000068194 ArrayExpress:F1M1Q9 Uniprot:F1M1Q9
Length = 277
Score = 147 (56.8 bits), Expect = 4.5e-10, P = 4.5e-10
Identities = 33/74 (44%), Positives = 47/74 (63%)
Query: 3 EVQRSS--GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG----FRTLSEGQTVEFS 56
+ Q+S G VKWF+ ++G+GFI D ED+FVHQT+IK R++ +G+TVEF
Sbjct: 34 QAQKSQVLGIVKWFNVRRGYGFINSNDTREDVFVHQTAIKKNKPRKYLRSVGDGETVEFE 93
Query: 57 VDVGEDGRTKAVDV 70
V GE G +A +V
Sbjct: 94 VVEGEKG-VEAANV 106
>UNIPROTKB|Q8AVK2 [details] [associations]
symbol:lin28b "Protein lin-28 homolog B" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0010587 "miRNA catabolic process" evidence=ISS] [GO:0031054
"pre-miRNA processing" evidence=ISS] [GO:0031123 "RNA 3'-end
processing" evidence=ISS] InterPro:IPR001878 InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050
PROSITE:PS50158 SMART:SM00343 SMART:SM00357 GO:GO:0005737
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0003723 GO:GO:0031054 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 HSSP:Q9H9Z2 Gene3D:4.10.60.10 SUPFAM:SSF57756
HOVERGEN:HBG081922 GO:GO:0010587 GO:GO:0031123 EMBL:BC042225
UniGene:Xl.23571 ProteinModelPortal:Q8AVK2 SMR:Q8AVK2
Xenbase:XB-GENE-1218973 Uniprot:Q8AVK2
Length = 252
Score = 125 (49.1 bits), Expect = 4.6e-10, Sum P(2) = 4.6e-10
Identities = 27/68 (39%), Positives = 39/68 (57%)
Query: 3 EVQRSSGTVKWFSAQKGFGFIA-------PEDGGEDLFVHQTSIKSEGFRTLSEGQTVEF 55
+V SG KWF+ + GFGFI+ P + D+FVHQ+ + +GFR+L EG+ VEF
Sbjct: 29 QVLLGSGHCKWFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLYMDGFRSLKEGEPVEF 88
Query: 56 SVDVGEDG 63
+ G
Sbjct: 89 TFKKSSKG 96
Score = 38 (18.4 bits), Expect = 4.6e-10, Sum P(2) = 4.6e-10
Identities = 6/11 (54%), Positives = 7/11 (63%)
Query: 120 CFNCGRTGHIA 130
C+NCG H A
Sbjct: 132 CYNCGGLDHHA 142
>UNIPROTKB|F1PB10 [details] [associations]
symbol:CSDA "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 OMA:ENQQATS GeneTree:ENSGT00390000009256
EMBL:AAEX03015257 EMBL:AAEX03015256 Ensembl:ENSCAFT00000021267
Uniprot:F1PB10
Length = 370
Score = 150 (57.9 bits), Expect = 4.7e-10, P = 4.7e-10
Identities = 31/63 (49%), Positives = 40/63 (63%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDVGEDGR 64
GTVKWF+ + G+GFI D ED+FVHQT+IK R++ +G+TVEF V GE G
Sbjct: 93 GTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGA 152
Query: 65 TKA 67
A
Sbjct: 153 EAA 155
>UNIPROTKB|P16989 [details] [associations]
symbol:CSDA "DNA-binding protein A" species:9606 "Homo
sapiens" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0005844 "polysome" evidence=IEA] [GO:0008584 "male gonad
development" evidence=IEA] [GO:0009566 "fertilization"
evidence=IEA] [GO:0043066 "negative regulation of apoptotic
process" evidence=IEA] [GO:0046622 "positive regulation of organ
growth" evidence=IEA] [GO:0048642 "negative regulation of skeletal
muscle tissue development" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0003690 "double-stranded DNA binding"
evidence=TAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=NAS] [GO:0003714
"transcription corepressor activity" evidence=TAS] [GO:0009409
"response to cold" evidence=TAS] [GO:0017048 "Rho GTPase binding"
evidence=ISS] [GO:0060547 "negative regulation of necrotic cell
death" evidence=IMP] [GO:0071474 "cellular hyperosmotic response"
evidence=IMP] [GO:0071356 "cellular response to tumor necrosis
factor" evidence=IMP] [GO:2000767 "positive regulation of
cytoplasmic translation" evidence=ISS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005923 "tight junction" evidence=ISS] [GO:0048471 "perinuclear
region of cytoplasm" evidence=ISS] [GO:0070935 "3'-UTR-mediated
mRNA stabilization" evidence=IC] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0005634
GO:GO:0005737 GO:GO:0003714 GO:GO:0043066 GO:GO:0031100
GO:GO:0009409 GO:GO:0001701 GO:GO:0009566 GO:GO:0003700
GO:GO:0007283 GO:GO:0006351 GO:GO:0008584 GO:GO:0000122
GO:GO:0003730 GO:GO:0003690 GO:GO:0003697 EMBL:CH471094
GO:GO:0005844 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0046622 GO:GO:0005921 InterPro:IPR019844 eggNOG:COG1278
EMBL:M24069 EMBL:L29071 EMBL:L29064 EMBL:L29065 EMBL:L29066
EMBL:L29067 EMBL:L29068 EMBL:L29069 EMBL:L29070 EMBL:X95325
EMBL:X72712 EMBL:AK314846 EMBL:BC008801 EMBL:BC015564 EMBL:BC015913
EMBL:BC021926 IPI:IPI00031801 IPI:IPI00219147 IPI:IPI00219148
PIR:I53354 PIR:S69501 RefSeq:NP_001138898.1 RefSeq:NP_003642.3
UniGene:Hs.221889 ProteinModelPortal:P16989 SMR:P16989
DIP:DIP-42489N IntAct:P16989 MINT:MINT-1152000 STRING:P16989
PhosphoSite:P16989 DMDM:97536050 PaxDb:P16989 PRIDE:P16989
DNASU:8531 Ensembl:ENST00000228251 Ensembl:ENST00000279550
GeneID:8531 KEGG:hsa:8531 UCSC:uc001qyt.3 UCSC:uc001qyu.3 CTD:8531
GeneCards:GC12M010851 HGNC:HGNC:2428 HPA:HPA034838 MIM:603437
neXtProt:NX_P16989 PharmGKB:PA26929 HOGENOM:HOG000116439
HOVERGEN:HBG008757 InParanoid:P16989 KO:K06099 OMA:ENQQATS
OrthoDB:EOG46DM3W PhylomeDB:P16989 ChiTaRS:CSDA GenomeRNAi:8531
NextBio:31948 PMAP-CutDB:P16989 Bgee:P16989 CleanEx:HS_CSDA
Genevestigator:P16989 GermOnline:ENSG00000060138 GO:GO:0048642
Uniprot:P16989
Length = 372
Score = 150 (57.9 bits), Expect = 4.7e-10, P = 4.7e-10
Identities = 31/63 (49%), Positives = 40/63 (63%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDVGEDGR 64
GTVKWF+ + G+GFI D ED+FVHQT+IK R++ +G+TVEF V GE G
Sbjct: 93 GTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGA 152
Query: 65 TKA 67
A
Sbjct: 153 EAA 155
>UNIPROTKB|A5D7Q4 [details] [associations]
symbol:CSDA "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048642 "negative regulation of skeletal muscle tissue
development" evidence=IEA] [GO:0046622 "positive regulation of
organ growth" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0009566 "fertilization"
evidence=IEA] [GO:0008584 "male gonad development" evidence=IEA]
[GO:0005844 "polysome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00313 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005634 GO:GO:0005737 GO:GO:0043066 GO:GO:0006355
GO:GO:0003677 GO:GO:0001701 GO:GO:0009566 GO:GO:0007283
GO:GO:0008584 GO:GO:0003730 GO:GO:0005844 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0046622 InterPro:IPR019844
eggNOG:COG1278 CTD:8531 HOGENOM:HOG000116439 HOVERGEN:HBG008757
KO:K06099 OMA:ENQQATS GO:GO:0048642 GeneTree:ENSGT00390000009256
EMBL:DAAA02014333 EMBL:BC140644 IPI:IPI00852465
RefSeq:NP_001091543.1 UniGene:Bt.7655 SMR:A5D7Q4 STRING:A5D7Q4
Ensembl:ENSBTAT00000012735 GeneID:533297 KEGG:bta:533297
InParanoid:A5D7Q4 NextBio:20875990 Uniprot:A5D7Q4
Length = 376
Score = 150 (57.9 bits), Expect = 4.8e-10, P = 4.8e-10
Identities = 31/63 (49%), Positives = 40/63 (63%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDVGEDGR 64
GTVKWF+ + G+GFI D ED+FVHQT+IK R++ +G+TVEF V GE G
Sbjct: 99 GTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGA 158
Query: 65 TKA 67
A
Sbjct: 159 EAA 161
>UNIPROTKB|I3LQF8 [details] [associations]
symbol:CSDA "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048642 "negative regulation of skeletal muscle tissue
development" evidence=IEA] [GO:0046622 "positive regulation of
organ growth" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0009566 "fertilization"
evidence=IEA] [GO:0008584 "male gonad development" evidence=IEA]
[GO:0005844 "polysome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00313 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005634 GO:GO:0005737 GO:GO:0043066 GO:GO:0006355
GO:GO:0003677 GO:GO:0001701 GO:GO:0009566 GO:GO:0007283
GO:GO:0008584 GO:GO:0003730 GO:GO:0005844 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0046622 InterPro:IPR019844
KO:K06099 OMA:ENQQATS GO:GO:0048642 GeneTree:ENSGT00390000009256
EMBL:CU856689 UniGene:Ssc.9655 GeneID:100518125 KEGG:ssc:100518125
RefSeq:XP_003126523.1 Ensembl:ENSSSCT00000027246 Uniprot:I3LQF8
Length = 380
Score = 150 (57.9 bits), Expect = 5.0e-10, P = 5.0e-10
Identities = 31/63 (49%), Positives = 40/63 (63%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDVGEDGR 64
GTVKWF+ + G+GFI D ED+FVHQT+IK R++ +G+TVEF V GE G
Sbjct: 102 GTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGA 161
Query: 65 TKA 67
A
Sbjct: 162 EAA 164
>UNIPROTKB|F1LY12 [details] [associations]
symbol:F1LY12 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 IPI:IPI00780136 Ensembl:ENSRNOT00000030974
ArrayExpress:F1LY12 Uniprot:F1LY12
Length = 292
Score = 147 (56.8 bits), Expect = 5.4e-10, P = 5.4e-10
Identities = 30/63 (47%), Positives = 40/63 (63%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDVGEDGR 64
GTVKWF+ + G+GFI D ED+FVHQT+IK R++ +G+TVE+ V GE G
Sbjct: 29 GTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEYDVVEGEKGA 88
Query: 65 TKA 67
A
Sbjct: 89 EAA 91
>UNIPROTKB|E1BHM3 [details] [associations]
symbol:LIN28A "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001878
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313
PRINTS:PR00050 PROSITE:PS50158 SMART:SM00343 SMART:SM00357
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:4.10.60.10 SUPFAM:SSF57756 GeneTree:ENSGT00390000001177
CTD:79727 OMA:GVGVCKW EMBL:DAAA02006373 IPI:IPI00718151
RefSeq:NP_001179986.1 UniGene:Bt.106487 ProteinModelPortal:E1BHM3
PRIDE:E1BHM3 Ensembl:ENSBTAT00000004196 GeneID:614997
KEGG:bta:614997 NextBio:20899397 Uniprot:E1BHM3
Length = 205
Score = 119 (46.9 bits), Expect = 5.4e-10, Sum P(2) = 5.4e-10
Identities = 24/61 (39%), Positives = 37/61 (60%)
Query: 3 EVQRSSGTVKWFSAQKGFGFIAPE-------DGGEDLFVHQTSIKSEGFRTLSEGQTVEF 55
++ +G KWF+ + GFGF++ D D+FVHQ+ + EGFR+L EG+ VEF
Sbjct: 32 QLLHGAGICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEF 91
Query: 56 S 56
+
Sbjct: 92 T 92
Score = 38 (18.4 bits), Expect = 5.4e-10, Sum P(2) = 5.4e-10
Identities = 6/11 (54%), Positives = 7/11 (63%)
Query: 120 CFNCGRTGHIA 130
C+NCG H A
Sbjct: 135 CYNCGGLDHHA 145
>UNIPROTKB|B1PXG0 [details] [associations]
symbol:LIN28 "LIN28" species:9823 "Sus scrofa" [GO:0060964
"regulation of gene silencing by miRNA" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0045686
"negative regulation of glial cell differentiation" evidence=IEA]
[GO:0045666 "positive regulation of neuron differentiation"
evidence=IEA] [GO:0035198 "miRNA binding" evidence=IEA] [GO:0031369
"translation initiation factor binding" evidence=IEA] [GO:0031123
"RNA 3'-end processing" evidence=IEA] [GO:0031054 "pre-miRNA
processing" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0010587 "miRNA catabolic process" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0007281
"germ cell development" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001878 InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050
PROSITE:PS50158 SMART:SM00343 SMART:SM00357 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0003729 GO:GO:0007281 GO:GO:0045666 GO:GO:0035198
GO:GO:0000932 GO:GO:0031054 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0045727
GO:GO:0019827 GO:GO:0010494 GeneTree:ENSGT00390000001177 CTD:79727
eggNOG:NOG244191 HOGENOM:HOG000047091 HOVERGEN:HBG081922
OrthoDB:EOG4640D4 GO:GO:0010587 GO:GO:0031123 OMA:GVGVCKW
GO:GO:0045686 EMBL:FP236394 EMBL:EU503118 RefSeq:NP_001116605.1
UniGene:Ssc.70783 SMR:B1PXG0 STRING:B1PXG0
Ensembl:ENSSSCT00000003951 GeneID:100142662 KEGG:ssc:100142662
Uniprot:B1PXG0
Length = 205
Score = 119 (46.9 bits), Expect = 5.4e-10, Sum P(2) = 5.4e-10
Identities = 24/61 (39%), Positives = 37/61 (60%)
Query: 3 EVQRSSGTVKWFSAQKGFGFIAPE-------DGGEDLFVHQTSIKSEGFRTLSEGQTVEF 55
++ +G KWF+ + GFGF++ D D+FVHQ+ + EGFR+L EG+ VEF
Sbjct: 32 QLLHGAGICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEF 91
Query: 56 S 56
+
Sbjct: 92 T 92
Score = 38 (18.4 bits), Expect = 5.4e-10, Sum P(2) = 5.4e-10
Identities = 6/11 (54%), Positives = 7/11 (63%)
Query: 120 CFNCGRTGHIA 130
C+NCG H A
Sbjct: 135 CYNCGGLDHHA 145
>UNIPROTKB|J9NTJ7 [details] [associations]
symbol:LOC474472 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 EMBL:AAEX03026560
Ensembl:ENSCAFT00000027380 OMA:ARKEDTH Uniprot:J9NTJ7
Length = 322
Score = 148 (57.2 bits), Expect = 5.6e-10, P = 5.6e-10
Identities = 31/63 (49%), Positives = 40/63 (63%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDVGEDGR 64
GTVKWF+ + G+GFI D ED+FVHQT+IK R++ +G+TVEF V GE G
Sbjct: 59 GTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNHPRKYLRSVGDGETVEFDVVEGEKGA 118
Query: 65 TKA 67
A
Sbjct: 119 EAA 121
>RGD|1305068 [details] [associations]
symbol:Ybx2 "Y box binding protein 2" species:10116 "Rattus
norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA;ISO] [GO:0003729 "mRNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=ISO;IDA] [GO:0005844 "polysome"
evidence=IEA;ISO] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0007286 "spermatid development"
evidence=IEA;ISO] [GO:0008289 "lipid binding" evidence=IEA;ISO]
[GO:0017148 "negative regulation of translation" evidence=IEA;ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0043021
"ribonucleoprotein complex binding" evidence=IEA;ISO] [GO:0045182
"translation regulator activity" evidence=IEA;ISO] [GO:0048255
"mRNA stabilization" evidence=IEA;ISO] [GO:0048477 "oogenesis"
evidence=ISO] [GO:0048599 "oocyte development" evidence=IEP]
[GO:0051100 "negative regulation of binding" evidence=IEA;ISO]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 RGD:1305068 GO:GO:0005737
GO:GO:0006355 GO:GO:0007286 GO:GO:0017148 GO:GO:0003677
GO:GO:0003682 GO:GO:0045182 GO:GO:0048255 GO:GO:0008289
GO:GO:0003730 GO:GO:0005844 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0043021 GO:GO:0048599 InterPro:IPR019844
GO:GO:0051100 OrthoDB:EOG46DM3W GeneTree:ENSGT00390000009256
CTD:51087 KO:K09277 OMA:MEGTDGV IPI:IPI00369907
RefSeq:XP_001079683.1 RefSeq:XP_220618.3 ProteinModelPortal:D4A3P0
Ensembl:ENSRNOT00000023003 GeneID:303250 KEGG:rno:303250
UCSC:RGD:1305068 NextBio:650980 ArrayExpress:D4A3P0 Uniprot:D4A3P0
Length = 359
Score = 149 (57.5 bits), Expect = 5.6e-10, P = 5.6e-10
Identities = 31/63 (49%), Positives = 40/63 (63%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDVGEDGR 64
GTVKWF+ + G+GFI D ED+FVHQT+IK R++ +G+TVEF V GE G
Sbjct: 97 GTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGA 156
Query: 65 TKA 67
A
Sbjct: 157 EAA 159
>UNIPROTKB|A5D7M4 [details] [associations]
symbol:YBX2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051100 "negative regulation of binding" evidence=IEA]
[GO:0048477 "oogenesis" evidence=IEA] [GO:0048255 "mRNA
stabilization" evidence=IEA] [GO:0045182 "translation regulator
activity" evidence=IEA] [GO:0043021 "ribonucleoprotein complex
binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0008289 "lipid binding"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IEA]
[GO:0005844 "polysome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0006355 GO:GO:0007286
GO:GO:0017148 GO:GO:0003677 GO:GO:0048477 GO:GO:0003682
GO:GO:0045182 GO:GO:0048255 GO:GO:0008289 GO:GO:0003730
GO:GO:0005844 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0043021 InterPro:IPR019844 GO:GO:0051100 eggNOG:COG1278
HOGENOM:HOG000116439 OrthoDB:EOG46DM3W GeneTree:ENSGT00390000009256
CTD:51087 HOVERGEN:HBG079361 KO:K09277 OMA:MEGTDGV
EMBL:DAAA02048764 EMBL:BC140614 IPI:IPI00705175
RefSeq:NP_001091595.1 UniGene:Bt.62380 SMR:A5D7M4 STRING:A5D7M4
Ensembl:ENSBTAT00000012026 GeneID:614429 KEGG:bta:614429
InParanoid:A5D7M4 NextBio:20899107 Uniprot:A5D7M4
Length = 360
Score = 149 (57.5 bits), Expect = 5.7e-10, P = 5.7e-10
Identities = 31/63 (49%), Positives = 40/63 (63%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDVGEDGR 64
GTVKWF+ + G+GFI D ED+FVHQT+IK R++ +G+TVEF V GE G
Sbjct: 98 GTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGA 157
Query: 65 TKA 67
A
Sbjct: 158 EAA 160
>UNIPROTKB|I3LCJ2 [details] [associations]
symbol:YBX2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
GO:GO:0007286 GO:GO:0017148 GO:GO:0003677 GO:GO:0048477
GO:GO:0003682 GO:GO:0045182 GO:GO:0048255 GO:GO:0008289
GO:GO:0003730 GO:GO:0005844 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0043021 InterPro:IPR019844 GO:GO:0051100
GeneTree:ENSGT00390000009256 KO:K09277 OMA:MEGTDGV EMBL:FP565181
RefSeq:XP_003131986.2 Ensembl:ENSSSCT00000022529 GeneID:100519387
KEGG:ssc:100519387 Uniprot:I3LCJ2
Length = 360
Score = 149 (57.5 bits), Expect = 5.7e-10, P = 5.7e-10
Identities = 31/63 (49%), Positives = 40/63 (63%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDVGEDGR 64
GTVKWF+ + G+GFI D ED+FVHQT+IK R++ +G+TVEF V GE G
Sbjct: 98 GTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGA 157
Query: 65 TKA 67
A
Sbjct: 158 EAA 160
>UNIPROTKB|E2RD12 [details] [associations]
symbol:LIN28A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0060964 "regulation of gene silencing by
miRNA" evidence=IEA] [GO:0045727 "positive regulation of
translation" evidence=IEA] [GO:0045686 "negative regulation of
glial cell differentiation" evidence=IEA] [GO:0045666 "positive
regulation of neuron differentiation" evidence=IEA] [GO:0035198
"miRNA binding" evidence=IEA] [GO:0031369 "translation initiation
factor binding" evidence=IEA] [GO:0031123 "RNA 3'-end processing"
evidence=IEA] [GO:0031054 "pre-miRNA processing" evidence=IEA]
[GO:0019827 "stem cell maintenance" evidence=IEA] [GO:0010587
"miRNA catabolic process" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0007281 "germ cell development"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IEA] [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR001878 InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050
PROSITE:PS50158 SMART:SM00343 SMART:SM00357 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0003729 GO:GO:0007281 GO:GO:0045666 GO:GO:0035198
GO:GO:0000932 GO:GO:0031054 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0045727
GO:GO:0019827 GO:GO:0010494 GeneTree:ENSGT00390000001177 CTD:79727
GO:GO:0010587 GO:GO:0031123 OMA:GVGVCKW GO:GO:0045686
EMBL:AAEX03001720 RefSeq:XP_854985.1 ProteinModelPortal:E2RD12
Ensembl:ENSCAFT00000019830 GeneID:612162 KEGG:cfa:612162
NextBio:20897695 Uniprot:E2RD12
Length = 206
Score = 119 (46.9 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
Identities = 24/61 (39%), Positives = 37/61 (60%)
Query: 3 EVQRSSGTVKWFSAQKGFGFIAPE-------DGGEDLFVHQTSIKSEGFRTLSEGQTVEF 55
++ +G KWF+ + GFGF++ D D+FVHQ+ + EGFR+L EG+ VEF
Sbjct: 32 QLLHGAGICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEF 91
Query: 56 S 56
+
Sbjct: 92 T 92
Score = 38 (18.4 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
Identities = 6/11 (54%), Positives = 7/11 (63%)
Query: 120 CFNCGRTGHIA 130
C+NCG H A
Sbjct: 135 CYNCGGLDHHA 145
>UNIPROTKB|Q9Y2T7 [details] [associations]
symbol:YBX2 "Y-box-binding protein 2" species:9606 "Homo
sapiens" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0007286
"spermatid development" evidence=IEA] [GO:0008289 "lipid binding"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0043021 "ribonucleoprotein complex binding"
evidence=IEA] [GO:0045182 "translation regulator activity"
evidence=IEA] [GO:0048255 "mRNA stabilization" evidence=IEA]
[GO:0048599 "oocyte development" evidence=IEA] [GO:0051100
"negative regulation of binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0007283 "spermatogenesis" evidence=TAS]
[GO:0009386 "translational attenuation" evidence=TAS]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005634 GO:GO:0005737
EMBL:CH471108 GO:GO:0006355 GO:GO:0007286 GO:GO:0017148
GO:GO:0003677 GO:GO:0007283 GO:GO:0003682 GO:GO:0045182
GO:GO:0048255 GO:GO:0006366 GO:GO:0008289 GO:GO:0003730
GO:GO:0005844 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0043021 GO:GO:0048599 InterPro:IPR019844 GO:GO:0051100
eggNOG:COG1278 HOGENOM:HOG000116439 OrthoDB:EOG46DM3W EMBL:AF096834
EMBL:BC033800 EMBL:BC047760 IPI:IPI00250153 RefSeq:NP_057066.2
UniGene:Hs.567494 ProteinModelPortal:Q9Y2T7 SMR:Q9Y2T7
STRING:Q9Y2T7 PhosphoSite:Q9Y2T7 DMDM:116242847 PaxDb:Q9Y2T7
PRIDE:Q9Y2T7 Ensembl:ENST00000007699 GeneID:51087 KEGG:hsa:51087
UCSC:uc002gfq.2 CTD:51087 GeneCards:GC17M007191 HGNC:HGNC:17948
HPA:CAB012332 MIM:611447 neXtProt:NX_Q9Y2T7 PharmGKB:PA142670560
HOVERGEN:HBG079361 InParanoid:Q9Y2T7 KO:K09277 OMA:MEGTDGV
PhylomeDB:Q9Y2T7 ChiTaRS:YBX2 GenomeRNAi:51087 NextBio:53755
Bgee:Q9Y2T7 CleanEx:HS_YBX2 Genevestigator:Q9Y2T7
GermOnline:ENSG00000006047 GO:GO:0009386 Uniprot:Q9Y2T7
Length = 364
Score = 149 (57.5 bits), Expect = 5.8e-10, P = 5.8e-10
Identities = 32/66 (48%), Positives = 43/66 (65%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDVGEDGR 64
GTVKWF+ + G+GFI D ED+FVHQT+IK R++ +G+TVEF V GE G
Sbjct: 96 GTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKG- 154
Query: 65 TKAVDV 70
+A +V
Sbjct: 155 AEATNV 160
>UNIPROTKB|F1SFU0 [details] [associations]
symbol:LOC100736899 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 EMBL:CU681851
Ensembl:ENSSSCT00000019522 OMA:XKERAPL Uniprot:F1SFU0
Length = 365
Score = 149 (57.5 bits), Expect = 5.9e-10, P = 5.9e-10
Identities = 31/63 (49%), Positives = 40/63 (63%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDVGEDGR 64
GTVKWF+ + G+GFI D ED+FVHQT+IK R++ +G+TVEF V GE G
Sbjct: 98 GTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGA 157
Query: 65 TKA 67
A
Sbjct: 158 EAA 160
>UNIPROTKB|E2RMN5 [details] [associations]
symbol:YBX2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0005737
GO:GO:0006355 GO:GO:0007286 GO:GO:0017148 GO:GO:0003677
GO:GO:0048477 GO:GO:0003682 GO:GO:0045182 GO:GO:0048255
GO:GO:0008289 GO:GO:0003730 GO:GO:0005844 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0043021 InterPro:IPR019844
GO:GO:0051100 GeneTree:ENSGT00390000009256 OMA:MEGTDGV
EMBL:AAEX03003607 Ensembl:ENSCAFT00000021272 NextBio:20862641
Uniprot:E2RMN5
Length = 367
Score = 149 (57.5 bits), Expect = 5.9e-10, P = 5.9e-10
Identities = 31/63 (49%), Positives = 40/63 (63%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDVGEDGR 64
GTVKWF+ + G+GFI D ED+FVHQT+IK R++ +G+TVEF V GE G
Sbjct: 98 GTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGA 157
Query: 65 TKA 67
A
Sbjct: 158 EAA 160
>UNIPROTKB|Q9H9Z2 [details] [associations]
symbol:LIN28A "Protein lin-28 homolog A" species:9606 "Homo
sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0007281 "germ cell development"
evidence=IEA] [GO:0031369 "translation initiation factor binding"
evidence=IEA] [GO:0035198 "miRNA binding" evidence=IEA] [GO:0045666
"positive regulation of neuron differentiation" evidence=IEA]
[GO:0045686 "negative regulation of glial cell differentiation"
evidence=IEA] [GO:0045727 "positive regulation of translation"
evidence=IEA] [GO:0060964 "regulation of gene silencing by miRNA"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0010587 "miRNA catabolic process" evidence=IMP]
[GO:0019827 "stem cell maintenance" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0031054 "pre-miRNA processing"
evidence=IMP] [GO:0031123 "RNA 3'-end processing" evidence=IMP]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=IDA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR001878 InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050
PROSITE:PS50158 SMART:SM00343 SMART:SM00357 GO:GO:0005634
GO:GO:0005730 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003729 GO:GO:0003723 GO:GO:0007281
GO:GO:0045666 GO:GO:0035198 GO:GO:0000932 GO:GO:0031054
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0045727 GO:GO:0019827
GO:GO:0010494 EMBL:AL513365 CTD:79727 eggNOG:NOG244191
HOGENOM:HOG000047091 HOVERGEN:HBG081922 OrthoDB:EOG4640D4
GO:GO:0010587 GO:GO:0031123 EMBL:AF521099 EMBL:AK022519
EMBL:BC028566 IPI:IPI00002948 RefSeq:NP_078950.1 UniGene:Hs.86154
PDB:2CQF PDB:2LI8 PDBsum:2CQF PDBsum:2LI8 ProteinModelPortal:Q9H9Z2
SMR:Q9H9Z2 IntAct:Q9H9Z2 STRING:Q9H9Z2 PhosphoSite:Q9H9Z2
DMDM:74752750 PaxDb:Q9H9Z2 PRIDE:Q9H9Z2 DNASU:79727
Ensembl:ENST00000254231 Ensembl:ENST00000326279 GeneID:79727
KEGG:hsa:79727 UCSC:uc001bmj.3 GeneCards:GC01P026737
HGNC:HGNC:15986 HPA:CAB020785 MIM:611043 neXtProt:NX_Q9H9Z2
PharmGKB:PA165751523 InParanoid:Q9H9Z2 OMA:GVGVCKW PhylomeDB:Q9H9Z2
EvolutionaryTrace:Q9H9Z2 GenomeRNAi:79727 NextBio:69098 Bgee:Q9H9Z2
CleanEx:HS_LIN28 Genevestigator:Q9H9Z2 GermOnline:ENSG00000131914
GO:GO:0045686 Uniprot:Q9H9Z2
Length = 209
Score = 119 (46.9 bits), Expect = 6.5e-10, Sum P(2) = 6.5e-10
Identities = 24/61 (39%), Positives = 37/61 (60%)
Query: 3 EVQRSSGTVKWFSAQKGFGFIAPE-------DGGEDLFVHQTSIKSEGFRTLSEGQTVEF 55
++ +G KWF+ + GFGF++ D D+FVHQ+ + EGFR+L EG+ VEF
Sbjct: 36 QLLHGAGICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEF 95
Query: 56 S 56
+
Sbjct: 96 T 96
Score = 38 (18.4 bits), Expect = 6.5e-10, Sum P(2) = 6.5e-10
Identities = 6/11 (54%), Positives = 7/11 (63%)
Query: 120 CFNCGRTGHIA 130
C+NCG H A
Sbjct: 139 CYNCGGLDHHA 149
>MGI|MGI:1890546 [details] [associations]
symbol:Lin28a "lin-28 homolog A (C. elegans)" species:10090
"Mus musculus" [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISO;IDA] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IGI;IMP] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISO] [GO:0010586 "miRNA metabolic process"
evidence=IDA] [GO:0010587 "miRNA catabolic process"
evidence=ISO;IMP] [GO:0019827 "stem cell maintenance" evidence=ISO]
[GO:0031047 "gene silencing by RNA" evidence=IEA] [GO:0031054
"pre-miRNA processing" evidence=ISO;IMP;IDA] [GO:0031123 "RNA
3'-end processing" evidence=ISO] [GO:0031369 "translation
initiation factor binding" evidence=IPI] [GO:0035198 "miRNA
binding" evidence=IDA] [GO:0045666 "positive regulation of neuron
differentiation" evidence=IDA] [GO:0045686 "negative regulation of
glial cell differentiation" evidence=IDA] [GO:0045727 "positive
regulation of translation" evidence=IDA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0048863 "stem cell differentiation"
evidence=IMP] [GO:0060964 "regulation of gene silencing by miRNA"
evidence=IGI] InterPro:IPR001878 InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050
PROSITE:PS50158 SMART:SM00343 SMART:SM00357 MGI:MGI:1890546
GO:GO:0005730 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003729 GO:GO:0048863 GO:GO:0007281
GO:GO:0045666 GO:GO:0035198 GO:GO:0000932 GO:GO:0031054
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0045727 GO:GO:0019827
GO:GO:0010494 GO:GO:0060964 GeneTree:ENSGT00390000001177 CTD:79727
eggNOG:NOG244191 HOGENOM:HOG000047091 HOVERGEN:HBG081922
OrthoDB:EOG4640D4 GO:GO:0010587 GO:GO:0031123 OMA:GVGVCKW
GO:GO:0045686 EMBL:AF521097 EMBL:BC068304 IPI:IPI00170180
RefSeq:NP_665832.1 UniGene:Mm.302567 PDB:3TRZ PDB:3TS0 PDB:3TS2
PDBsum:3TRZ PDBsum:3TS0 PDBsum:3TS2 ProteinModelPortal:Q8K3Y3
SMR:Q8K3Y3 DIP:DIP-48573N STRING:Q8K3Y3 PhosphoSite:Q8K3Y3
PRIDE:Q8K3Y3 Ensembl:ENSMUST00000051674 GeneID:83557 KEGG:mmu:83557
UCSC:uc008vdw.1 InParanoid:Q8K3Y3 NextBio:350634 Bgee:Q8K3Y3
CleanEx:MM_LIN28 Genevestigator:Q8K3Y3
GermOnline:ENSMUSG00000050966 Uniprot:Q8K3Y3
Length = 209
Score = 119 (46.9 bits), Expect = 6.5e-10, Sum P(2) = 6.5e-10
Identities = 24/61 (39%), Positives = 37/61 (60%)
Query: 3 EVQRSSGTVKWFSAQKGFGFIAPE-------DGGEDLFVHQTSIKSEGFRTLSEGQTVEF 55
++ +G KWF+ + GFGF++ D D+FVHQ+ + EGFR+L EG+ VEF
Sbjct: 36 QLLHGAGICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEF 95
Query: 56 S 56
+
Sbjct: 96 T 96
Score = 38 (18.4 bits), Expect = 6.5e-10, Sum P(2) = 6.5e-10
Identities = 6/11 (54%), Positives = 7/11 (63%)
Query: 120 CFNCGRTGHIA 130
C+NCG H A
Sbjct: 139 CYNCGGLDHHA 149
>RGD|1566408 [details] [associations]
symbol:Lin28a "lin-28 homolog A (C. elegans)" species:10116
"Rattus norvegicus" [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA;ISO] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0003729 "mRNA binding" evidence=IEA;ISO]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0007281 "germ cell development"
evidence=IEA;ISO] [GO:0008150 "biological_process" evidence=ND]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA;ISO] [GO:0010586 "miRNA
metabolic process" evidence=ISO] [GO:0010587 "miRNA catabolic
process" evidence=IEA;ISO] [GO:0019827 "stem cell maintenance"
evidence=IEA;ISO] [GO:0031054 "pre-miRNA processing"
evidence=IEA;ISO] [GO:0031123 "RNA 3'-end processing"
evidence=IEA;ISO] [GO:0031369 "translation initiation factor
binding" evidence=IEA;ISO] [GO:0035198 "miRNA binding"
evidence=IEA;ISO] [GO:0045666 "positive regulation of neuron
differentiation" evidence=IEA;ISO] [GO:0045686 "negative regulation
of glial cell differentiation" evidence=IEA;ISO] [GO:0045727
"positive regulation of translation" evidence=IEA;ISO] [GO:0048863
"stem cell differentiation" evidence=ISO] [GO:0060964 "regulation
of gene silencing by miRNA" evidence=IEA;ISO] InterPro:IPR001878
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313
PRINTS:PR00050 PROSITE:PS50158 SMART:SM00343 SMART:SM00357
RGD:1566408 GO:GO:0005730 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003729 GO:GO:0007281 GO:GO:0045666
GO:GO:0035198 GO:GO:0000932 GO:GO:0031054 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0045727 GO:GO:0019827 GO:GO:0010494
EMBL:CH473968 CTD:79727 OrthoDB:EOG4640D4 GO:GO:0010587
GO:GO:0031123 OMA:GVGVCKW GO:GO:0045686 IPI:IPI00560264
RefSeq:NP_001102739.1 UniGene:Rn.147538 Ensembl:ENSRNOT00000020641
GeneID:500562 KEGG:rno:500562 UCSC:RGD:1566408 NextBio:706580
Uniprot:D3ZZA6
Length = 209
Score = 119 (46.9 bits), Expect = 6.5e-10, Sum P(2) = 6.5e-10
Identities = 24/61 (39%), Positives = 37/61 (60%)
Query: 3 EVQRSSGTVKWFSAQKGFGFIAPE-------DGGEDLFVHQTSIKSEGFRTLSEGQTVEF 55
++ +G KWF+ + GFGF++ D D+FVHQ+ + EGFR+L EG+ VEF
Sbjct: 36 QLLHGAGICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEF 95
Query: 56 S 56
+
Sbjct: 96 T 96
Score = 38 (18.4 bits), Expect = 6.5e-10, Sum P(2) = 6.5e-10
Identities = 6/11 (54%), Positives = 7/11 (63%)
Query: 120 CFNCGRTGHIA 130
C+NCG H A
Sbjct: 139 CYNCGGLDHHA 149
>UNIPROTKB|E9PTV8 [details] [associations]
symbol:E9PTV8 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 IPI:IPI00551815
OMA:EGNESAP PRIDE:E9PTV8 Ensembl:ENSRNOT00000015875
ArrayExpress:E9PTV8 Uniprot:E9PTV8
Length = 326
Score = 147 (56.8 bits), Expect = 7.4e-10, P = 7.4e-10
Identities = 30/63 (47%), Positives = 40/63 (63%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDVGEDGR 64
GTVKWF+ + G+GFI D ED+FVHQT+IK R++ +G+TVE+ V GE G
Sbjct: 59 GTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEYDVVEGEKGA 118
Query: 65 TKA 67
A
Sbjct: 119 EAA 121
>UNIPROTKB|J9P9A0 [details] [associations]
symbol:J9P9A0 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 EMBL:AAEX03001199
OMA:QPREDSK Ensembl:ENSCAFT00000048533 Uniprot:J9P9A0
Length = 257
Score = 144 (55.7 bits), Expect = 7.4e-10, P = 7.4e-10
Identities = 29/63 (46%), Positives = 39/63 (61%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDVGEDGR 64
GTVKWF+ + G+GF+ D ED+F HQT+IK R++ +G+TVEF V GE G
Sbjct: 50 GTVKWFNVRNGYGFLNRNDSKEDVFAHQTAIKKNHPRKYLRSVGDGETVEFDVVEGEKGA 109
Query: 65 TKA 67
A
Sbjct: 110 EAA 112
>UNIPROTKB|Q45KJ4 [details] [associations]
symbol:LIN28B "Protein lin-28 homolog B" species:9031
"Gallus gallus" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0031054 "pre-miRNA
processing" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0010587 "miRNA catabolic process" evidence=ISS]
[GO:0031123 "RNA 3'-end processing" evidence=ISS]
InterPro:IPR001878 InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050 PROSITE:PS50158
SMART:SM00343 SMART:SM00357 GO:GO:0005739 GO:GO:0005634
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0003723 GO:GO:0031054 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 HSSP:Q9H9Z2 Gene3D:4.10.60.10 SUPFAM:SSF57756
eggNOG:COG1278 GeneTree:ENSGT00390000001177 HOGENOM:HOG000047091
HOVERGEN:HBG081922 OrthoDB:EOG4640D4 GO:GO:0010587 GO:GO:0031123
EMBL:DQ127227 IPI:IPI00655492 RefSeq:NP_001029990.1
UniGene:Gga.14055 ProteinModelPortal:Q45KJ4 SMR:Q45KJ4
Ensembl:ENSGALT00000024860 GeneID:421786 KEGG:gga:421786 CTD:389421
InParanoid:Q45KJ4 OMA:GGHGCTS NextBio:20824507 Uniprot:Q45KJ4
Length = 250
Score = 123 (48.4 bits), Expect = 7.6e-10, Sum P(2) = 7.6e-10
Identities = 26/63 (41%), Positives = 37/63 (58%)
Query: 8 SGTVKWFSAQKGFGFIA-------PEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVG 60
+G KWF+ + GFGFI+ P + D+FVHQ+ + EGFR+L EG+ VEF+
Sbjct: 31 AGHCKWFNVRMGFGFISMSSREGSPLESPVDVFVHQSKLYMEGFRSLKEGEPVEFTYKKS 90
Query: 61 EDG 63
G
Sbjct: 91 SKG 93
Score = 38 (18.4 bits), Expect = 7.6e-10, Sum P(2) = 7.6e-10
Identities = 6/11 (54%), Positives = 7/11 (63%)
Query: 120 CFNCGRTGHIA 130
C+NCG H A
Sbjct: 129 CYNCGGLDHHA 139
>UNIPROTKB|J9NYZ2 [details] [associations]
symbol:J9NYZ2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 EMBL:AAEX03026423
OMA:GGPQDQR Ensembl:ENSCAFT00000048266 Uniprot:J9NYZ2
Length = 316
Score = 146 (56.5 bits), Expect = 8.8e-10, P = 8.8e-10
Identities = 32/70 (45%), Positives = 46/70 (65%)
Query: 5 QRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDVG 60
+R G+VKWF+ + G+GFI+ D ED+FVHQT+I R++ +G+TVEF V G
Sbjct: 67 KRVRGSVKWFNVKNGYGFISRHDTQEDVFVHQTAITRNNPHKYQRSVGDGETVEFDVVQG 126
Query: 61 EDGRTKAVDV 70
E G T+A +V
Sbjct: 127 ERG-TEAANV 135
>UNIPROTKB|G3MX85 [details] [associations]
symbol:LOC539705 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001878 InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050 PROSITE:PS50158
SMART:SM00343 SMART:SM00357 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 Gene3D:4.10.60.10 SUPFAM:SSF57756
GeneTree:ENSGT00390000001177 EMBL:DAAA02059465
RefSeq:XP_003584165.1 RefSeq:XP_003587957.1
Ensembl:ENSBTAT00000065480 GeneID:539705 KEGG:bta:539705
OMA:CMGSERR Uniprot:G3MX85
Length = 201
Score = 116 (45.9 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 24/56 (42%), Positives = 34/56 (60%)
Query: 8 SGTVKWFSAQKGFGFIAPE-------DGGEDLFVHQTSIKSEGFRTLSEGQTVEFS 56
+G KWF+ GFGF++ D D+FVHQ+ + EGFR+L EG+ VEF+
Sbjct: 33 AGICKWFNVPMGFGFLSMTACAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFT 88
Score = 38 (18.4 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 6/11 (54%), Positives = 7/11 (63%)
Query: 120 CFNCGRTGHIA 130
C+NCG H A
Sbjct: 131 CYNCGGLDHHA 141
>UNIPROTKB|E1C9B8 [details] [associations]
symbol:E1C9B8 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GeneTree:ENSGT00390000009256
EMBL:AADN02037767 EMBL:AADN02037762 EMBL:AADN02037763
EMBL:AADN02037764 EMBL:AADN02037765 EMBL:AADN02037766
IPI:IPI00588677 Ensembl:ENSGALT00000029277 OMA:EHAGIIV
ArrayExpress:E1C9B8 Uniprot:E1C9B8
Length = 295
Score = 144 (55.7 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 31/64 (48%), Positives = 41/64 (64%)
Query: 9 GTVKWFSAQKGFGFI-APEDGGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDVGEDG 63
GTVKWF+ + G+GFI + D ED+FVHQT+IK R++ +G+TVEF V GE G
Sbjct: 84 GTVKWFNVRNGYGFINSRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKG 143
Query: 64 RTKA 67
A
Sbjct: 144 AEAA 147
>FB|FBgn0022959 [details] [associations]
symbol:yps "ypsilon schachtel" species:7227 "Drosophila
melanogaster" [GO:0005634 "nucleus" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=TAS] [GO:0048477 "oogenesis" evidence=NAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IC] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 GO:GO:0003729 GO:GO:0048477 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0071011 GO:GO:0000398
GO:GO:0071013 InterPro:IPR019844 HSSP:O54310 EMBL:U49120
ProteinModelPortal:O46173 SMR:O46173 IntAct:O46173 STRING:O46173
PaxDb:O46173 PRIDE:O46173 FlyBase:FBgn0022959 eggNOG:NOG317970
InParanoid:O46173 OrthoDB:EOG4MPG6H ChiTaRS:yps ArrayExpress:O46173
Bgee:O46173 Uniprot:O46173
Length = 359
Score = 145 (56.1 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 28/63 (44%), Positives = 42/63 (66%)
Query: 8 SGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKS---EGFRTLSEGQTVEFSVDVGEDGR 64
+GTVKWF+ + G+GFI D ED+FVHQ++I + + R++ +G+ VEF V +GE G
Sbjct: 64 TGTVKWFNVKSGYGFINRNDTREDVFVHQSAIANNPKKAVRSVGDGEVVEFDVVIGEKGN 123
Query: 65 TKA 67
A
Sbjct: 124 EAA 126
>UNIPROTKB|F1RWB7 [details] [associations]
symbol:F1RWB7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=IEA] [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=IEA] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=IEA] [GO:0051154 "negative regulation of striated muscle
cell differentiation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844
GeneTree:ENSGT00390000009256 EMBL:CU693419
Ensembl:ENSSSCT00000009700 OMA:QPREDSK Uniprot:F1RWB7
Length = 302
Score = 141 (54.7 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 29/63 (46%), Positives = 39/63 (61%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDVGEDGR 64
GTVKWF+ + G+GFI D ED+FVHQT+IK R++ +G+ VEF V GE+
Sbjct: 65 GTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGEIVEFDVVEGEESA 124
Query: 65 TKA 67
A
Sbjct: 125 EAA 127
>UNIPROTKB|G3X6E4 [details] [associations]
symbol:G3X6E4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0006355 GO:GO:0003677
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 OMA:ERESDWQ
EMBL:DAAA02073461 Ensembl:ENSBTAT00000005429 Uniprot:G3X6E4
Length = 245
Score = 138 (53.6 bits), Expect = 3.0e-09, P = 3.0e-09
Identities = 33/70 (47%), Positives = 44/70 (62%)
Query: 5 QRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG---FR-TLSEGQTVEFSVDVG 60
+R GTV WF +KG+GFI D ED+FVH T+I E +R ++ +G+TVEF V G
Sbjct: 42 KRVLGTVVWFKDKKGYGFIRRHDTQEDVFVHHTAITGETPCKYRGSVDDGETVEFDVVQG 101
Query: 61 EDGRTKAVDV 70
E G T+A V
Sbjct: 102 ERG-TEAAKV 110
>UNIPROTKB|F1S319 [details] [associations]
symbol:F1S319 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GeneTree:ENSGT00390000009256
EMBL:CU914460 Ensembl:ENSSSCT00000016681 Uniprot:F1S319
Length = 238
Score = 135 (52.6 bits), Expect = 6.0e-09, P = 6.0e-09
Identities = 29/63 (46%), Positives = 39/63 (61%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFR----TLSEGQTVEFSVDVGEDGR 64
GTVKW S + G+GFI D ED+FV+QT+IK+ R ++ +G+T EF V GE G
Sbjct: 45 GTVKWLSVRNGYGFINGNDTKEDVFVYQTAIKNNNPRKYLHSIGDGETAEFDVVEGEKGA 104
Query: 65 TKA 67
A
Sbjct: 105 EAA 107
>UNIPROTKB|G3N0T3 [details] [associations]
symbol:G3N0T3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0006355 GO:GO:0003677
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 EMBL:DAAA02073368
Ensembl:ENSBTAT00000064453 OMA:GGPQDQR Uniprot:G3N0T3
Length = 239
Score = 135 (52.6 bits), Expect = 6.1e-09, P = 6.1e-09
Identities = 31/70 (44%), Positives = 46/70 (65%)
Query: 5 QRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG---FR-TLSEGQTVEFSVDVG 60
+R GTV WF +KG+GFI+ +D ED+FVH T+I + +R ++ +G+ VEF V G
Sbjct: 23 KRVLGTVVWFKEKKGYGFISRQDTQEDVFVHHTAITGKNPCTYRGSVDDGEMVEFDVVQG 82
Query: 61 EDGRTKAVDV 70
E G T+A +V
Sbjct: 83 EWG-TEAANV 91
>UNIPROTKB|F1M0E9 [details] [associations]
symbol:F1M0E9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 EMBL:AC118318
IPI:IPI00781417 Ensembl:ENSRNOT00000011205 Uniprot:F1M0E9
Length = 311
Score = 132 (51.5 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 31/63 (49%), Positives = 41/63 (65%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIK----SEGFRTLSEGQTVEFSVDVGEDGR 64
GTVK F+ + G+GFI D ED+FVHQT+IK S+ R++ +G+TVEF V GE G
Sbjct: 50 GTVK-FNVRNGYGFINRNDTKEDVFVHQTAIKKNNPSKYLRSVGDGETVEFDVVEGEKGA 108
Query: 65 TKA 67
A
Sbjct: 109 EAA 111
>UNIPROTKB|O53883 [details] [associations]
symbol:cspB "Cold-shock domain family protein" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=IDA] InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050 SMART:SM00357
GO:GO:0005886 GO:GO:0005737 GO:GO:0005618 GO:GO:0006355
EMBL:AE000516 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
GO:GO:0003677 EMBL:BX842574 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 KO:K03704 EMBL:AL123456 PIR:G70816
RefSeq:NP_215386.1 RefSeq:NP_335321.1 RefSeq:YP_006514222.1
HSSP:P32081 SMR:O53883 EnsemblBacteria:EBMYCT00000000603
EnsemblBacteria:EBMYCT00000069203 GeneID:13318773 GeneID:885725
GeneID:926203 KEGG:mtc:MT0893 KEGG:mtu:Rv0871 KEGG:mtv:RVBD_0871
PATRIC:18123716 TubercuList:Rv0871 HOGENOM:HOG000070675 OMA:KVQPDLR
ProtClustDB:CLSK871866 Uniprot:O53883
Length = 135
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 24/56 (42%), Positives = 35/56 (62%)
Query: 8 SGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDG 63
+G VKW+ KGFGF++ E GGED++V +++ + G L GQ VEF + G G
Sbjct: 3 TGKVKWYDPDKGFGFLSQE-GGEDVYVRSSALPT-GVEALKAGQRVEFGIASGRRG 56
>UNIPROTKB|F1PZ69 [details] [associations]
symbol:F1PZ69 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 GO:GO:0006355 GO:GO:0003677
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GeneTree:ENSGT00390000009256 EMBL:AAEX03013316
Ensembl:ENSCAFT00000008808 Uniprot:F1PZ69
Length = 306
Score = 127 (49.8 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 30/64 (46%), Positives = 36/64 (56%)
Query: 9 GTVKWFSAQKG-FGFIAPEDGGEDLFVHQTSIKSEGFR----TLSEGQTVEFSVDVGEDG 63
GTVKWFS + G +G I D ED F HQT+IK R ++ +G TVEF V GE G
Sbjct: 53 GTVKWFSVRNGGYGLINRNDTKEDAFAHQTAIKKNNPRKYLCSVGDGDTVEFDVAEGEKG 112
Query: 64 RTKA 67
A
Sbjct: 113 AEAA 116
>WB|WBGene00000472 [details] [associations]
symbol:cey-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IDA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 OMA:CFKCGEP EMBL:Z81525
GeneTree:ENSGT00390000009256 HSSP:P41016 PIR:T21689
RefSeq:NP_496366.1 ProteinModelPortal:O62213 SMR:O62213
DIP:DIP-26200N IntAct:O62213 MINT:MINT-1068354 STRING:O62213
PaxDb:O62213 EnsemblMetazoa:F33A8.3.1 EnsemblMetazoa:F33A8.3.2
GeneID:174690 KEGG:cel:CELE_F33A8.3 CTD:174690 WormBase:F33A8.3
HOGENOM:HOG000016800 InParanoid:O62213 NextBio:885082
Uniprot:O62213
Length = 208
Score = 122 (48.0 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 25/59 (42%), Positives = 35/59 (59%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDVGEDG 63
GTVKWF+ + G+GFI D ED+FVHQT+I + R+L + + V F + G G
Sbjct: 23 GTVKWFNVKNGYGFINRTDTNEDIFVHQTAIINNNPNKYLRSLGDNEEVMFDIVEGSKG 81
>TIGR_CMR|APH_0135 [details] [associations]
symbol:APH_0135 "cold shock protein, CSD family"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 SMART:SM00357
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 EMBL:CP000235
GenomeReviews:CP000235_GR Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 eggNOG:COG1278 KO:K03704 HOGENOM:HOG000070673
OMA:SYDVLQD ProtClustDB:CLSK749336 RefSeq:YP_504760.1
ProteinModelPortal:Q2GLJ1 STRING:Q2GLJ1 GeneID:3929975
KEGG:aph:APH_0135 PATRIC:20948842
BioCyc:APHA212042:GHPM-170-MONOMER Uniprot:Q2GLJ1
Length = 89
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 8 SGTVKWFSAQKGFGFIAPED-----------GGEDLFVHQTSIKSEGFRTLSEGQTVEFS 56
+G VKWFS +KG+GFI + G +D+FVH TS++ L EGQ V +
Sbjct: 12 TGHVKWFSVEKGYGFICKDSSEGSKGSAMGHGEKDVFVHITSLQRSRIDNLREGQKVRYQ 71
Query: 57 VDVGEDGRTKAVDVE 71
+D +G+ AV++E
Sbjct: 72 LDEN-NGKVSAVNLE 85
>TIGR_CMR|ECH_0298 [details] [associations]
symbol:ECH_0298 "cold shock protein, CSD family"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003677
"DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0009409 "response
to cold" evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 SMART:SM00357
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 EMBL:CP000236
GenomeReviews:CP000236_GR Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 eggNOG:COG1278 KO:K03704 HOGENOM:HOG000070673
RefSeq:YP_507119.1 ProteinModelPortal:Q2GHG4 STRING:Q2GHG4
GeneID:3927002 KEGG:ech:ECH_0298 PATRIC:20576101 OMA:SYDVLQD
ProtClustDB:CLSK749336 BioCyc:ECHA205920:GJNR-298-MONOMER
Uniprot:Q2GHG4
Length = 88
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 27/74 (36%), Positives = 44/74 (59%)
Query: 8 SGTVKWFSAQKGFGFIAPEDGG----------EDLFVHQTSIKSEGFRTLSEGQTVEFSV 57
+G VKWFS++KG+GFI + G +D+FVH T+++ L EGQ V++ +
Sbjct: 12 TGYVKWFSSEKGYGFICKDQGNNKIRNIGQDIKDIFVHITALQRSKIDGLREGQKVKYQL 71
Query: 58 DVGEDGRTKAVDVE 71
D +G+ AV++E
Sbjct: 72 DKN-NGKFSAVNLE 84
>TIGR_CMR|SPO_2140 [details] [associations]
symbol:SPO_2140 "cold shock DNA-binding domain protein"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 GO:GO:0005737 GO:GO:0006355
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 KO:K03704
RefSeq:YP_167367.1 ProteinModelPortal:Q5LRI8 GeneID:3193503
KEGG:sil:SPO2140 PATRIC:23377625 HOGENOM:HOG000139725 OMA:FIVPDNG
ProtClustDB:CLSK933775 Uniprot:Q5LRI8
Length = 175
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 21/70 (30%), Positives = 40/70 (57%)
Query: 1 MAEVQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVG 60
++ + G VKWF KG+GF+ E+GG D+ +H +++ G ++++G +E
Sbjct: 5 LSSAYKVRGRVKWFDPTKGYGFVVAEEGGPDILLHVNVLRNFGQSSVADGAAIEIMTHRT 64
Query: 61 EDGRTKAVDV 70
+ G +AV+V
Sbjct: 65 DRG-VQAVEV 73
Score = 98 (39.6 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 21/57 (36%), Positives = 28/57 (49%)
Query: 11 VKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGRTKA 67
VKWF KGFGF ED+F+H ++ G L G+ + V G+ GR A
Sbjct: 108 VKWFDKGKGFGFANVFGSSEDVFLHIEVLRQSGLSDLQPGEALAMRVIDGKRGRMAA 164
>WB|WBGene00000473 [details] [associations]
symbol:cey-2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00313 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR019844 eggNOG:COG1278
GeneTree:ENSGT00390000009256 EMBL:FO081396 HSSP:P41016 PIR:T25767
RefSeq:NP_491645.1 ProteinModelPortal:P91306 SMR:P91306
DIP:DIP-26178N IntAct:P91306 MINT:MINT-1083994 STRING:P91306
PaxDb:P91306 EnsemblMetazoa:F46F11.2.1 EnsemblMetazoa:F46F11.2.2
GeneID:172219 KEGG:cel:CELE_F46F11.2 UCSC:F46F11.2.1 CTD:172219
WormBase:F46F11.2 HOGENOM:HOG000016644 InParanoid:P91306
OMA:VERIRIW NextBio:874555 Uniprot:P91306
Length = 267
Score = 120 (47.3 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 28/60 (46%), Positives = 40/60 (66%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSI-KS--EGF--RTLSEGQTVEFSVDVGEDG 63
G VKW+S + +GFI+ DG +D+FVHQT+I KS E F RTL + + V F + G++G
Sbjct: 68 GKVKWYSVLRRYGFISRNDGEKDIFVHQTAIAKSATEKFYLRTLGDDEEVLFDLVEGKNG 127
>UNIPROTKB|G3N2S9 [details] [associations]
symbol:G3N2S9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0006355 GO:GO:0003677
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000009256 EMBL:DAAA02073372
Ensembl:ENSBTAT00000065366 Uniprot:G3N2S9
Length = 224
Score = 117 (46.2 bits), Expect = 5.7e-07, P = 5.7e-07
Identities = 29/66 (43%), Positives = 41/66 (62%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG---FR-TLSEGQTVEFSVDVGEDGR 64
G+V F +KG+GFI+ + ED+FVH T+I + +R ++ G+TVEF V GE G
Sbjct: 12 GSVVRFKEKKGYGFISMHNTQEDVFVHHTAITRKNPCMYRGSVENGETVEFDVVQGEQG- 70
Query: 65 TKAVDV 70
TKA V
Sbjct: 71 TKAAKV 76
>WB|WBGene00000474 [details] [associations]
symbol:cey-3 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0043021 "ribonucleoprotein complex
binding" evidence=IDA] [GO:0030529 "ribonucleoprotein complex"
evidence=IDA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 GO:GO:0030529 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0043021 InterPro:IPR019844 eggNOG:COG1278
GeneTree:ENSGT00390000009256 HSSP:P41016 EMBL:FO081398
HOGENOM:HOG000016644 PIR:T29322 RefSeq:NP_491631.1
ProteinModelPortal:P91398 SMR:P91398 STRING:P91398 PaxDb:P91398
EnsemblMetazoa:M01E11.5.1 EnsemblMetazoa:M01E11.5.2 GeneID:172211
KEGG:cel:CELE_M01E11.5 UCSC:M01E11.5.1 CTD:172211 WormBase:M01E11.5
InParanoid:P91398 OMA:FDSKETE NextBio:874515 Uniprot:P91398
Length = 265
Score = 118 (46.6 bits), Expect = 7.3e-07, P = 7.3e-07
Identities = 28/60 (46%), Positives = 41/60 (68%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSI-KS--EGF--RTLSEGQTVEFSVDVGEDG 63
G VKW+S + +GFI+ DG +D+FVHQT+I KS E F RTL++ + V F + G++G
Sbjct: 66 GKVKWYSVLRRYGFISRSDGEKDVFVHQTAISKSDTEKFYLRTLADEEEVLFDLVDGKNG 125
>RGD|1307592 [details] [associations]
symbol:Lin28c "lin-28 homolog C (C. elegans)" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] REFSEQ:XM_233546 Ncbi:XP_233546
Length = 196
Score = 92 (37.4 bits), Expect = 8.7e-07, Sum P(2) = 8.7e-07
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 15 SAQKGFGFIAPE-------DGGEDLFVHQTSIKSEGFRTLSEGQTVEFS 56
+ + GFGF++ D D+FVHQ+ + +EGFR+L EG+ VEF+
Sbjct: 35 NVRMGFGFLSMTACAGVALDPTMDVFVHQSRLHTEGFRSLKEGEAVEFT 83
Score = 38 (18.4 bits), Expect = 8.7e-07, Sum P(2) = 8.7e-07
Identities = 6/11 (54%), Positives = 7/11 (63%)
Query: 120 CFNCGRTGHIA 130
C+NCG H A
Sbjct: 126 CYNCGGLDHHA 136
>UNIPROTKB|F1RZ18 [details] [associations]
symbol:F1RZ18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GeneTree:ENSGT00390000009256
EMBL:FP102825 Ensembl:ENSSSCT00000014024 Uniprot:F1RZ18
Length = 302
Score = 116 (45.9 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 26/63 (41%), Positives = 38/63 (60%)
Query: 10 TVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFR----TLSEGQTVEFSVDVGEDGRT 65
TVKW++ + G+GF D + +FVHQT+IK R ++ +G+TVEF + GE GR
Sbjct: 55 TVKWYNVRNGYGFNR-NDTKKYIFVHQTAIKKNNPRKYLHSVEDGETVEFDIVEGEKGRA 113
Query: 66 KAV 68
V
Sbjct: 114 ANV 116
>UNIPROTKB|F1SN83 [details] [associations]
symbol:F1SN83 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GeneTree:ENSGT00390000009256
EMBL:CU856056 EMBL:FP015901 Ensembl:ENSSSCT00000006028
Ensembl:ENSSSCT00000006029 Uniprot:F1SN83
Length = 299
Score = 114 (45.2 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 28/63 (44%), Positives = 38/63 (60%)
Query: 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDV 59
+ + GTVK FS + G+GFI D ED+ VH T+IK RT +G+T+EF V V
Sbjct: 40 IAKKLGTVKCFSGRNGYGFINRNDTKEDVCVH-TAIKKNNPRKYLRTKGDGETMEFDV-V 97
Query: 60 GED 62
GE+
Sbjct: 98 GEE 100
>UNIPROTKB|I3LAD3 [details] [associations]
symbol:I3LAD3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GeneTree:ENSGT00390000009256
EMBL:CU856056 EMBL:FP015901 Ensembl:ENSSSCT00000023603
Ensembl:ENSSSCT00000025195 Uniprot:I3LAD3
Length = 315
Score = 114 (45.2 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 28/63 (44%), Positives = 38/63 (60%)
Query: 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDV 59
+ + GTVK FS + G+GFI D ED+ VH T+IK RT +G+T+EF V V
Sbjct: 52 IAKKLGTVKCFSGRNGYGFINRNDTKEDVCVH-TAIKKNNPRKYLRTKGDGETMEFDV-V 109
Query: 60 GED 62
GE+
Sbjct: 110 GEE 112
>UNIPROTKB|F1NMZ8 [details] [associations]
symbol:YBX1 "Nuclease-sensitive element-binding protein 1"
species:9031 "Gallus gallus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0005689
"U12-type spliceosomal complex" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0051154 "negative
regulation of striated muscle cell differentiation" evidence=IEA]
[GO:0070934 "CRD-mediated mRNA stabilization" evidence=IEA]
[GO:0070937 "CRD-mediated mRNA stability complex" evidence=IEA]
[GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0000122
GO:GO:0003697 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0010494 InterPro:IPR019844 GeneTree:ENSGT00390000009256
GO:GO:0005689 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204
GO:GO:0051154 OMA:VEGADNQ EMBL:AADN02073477 IPI:IPI00683264
Ensembl:ENSGALT00000039185 ArrayExpress:F1NMZ8 Uniprot:F1NMZ8
Length = 288
Score = 113 (44.8 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 25/57 (43%), Positives = 34/57 (59%)
Query: 15 SAQKGFGFIAPEDGGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDVGEDGRTKA 67
+ + G+GFI D ED+FVHQT+IK R++ +G+TVEF V GE G A
Sbjct: 10 NVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAA 66
>GENEDB_PFALCIPARUM|PFA0470c [details] [associations]
symbol:PFA0470c "cold-shock protein, putative"
species:5833 "Plasmodium falciparum" [GO:0003690 "double-stranded
DNA binding" evidence=ISS] InterPro:IPR002059 Pfam:PF00313
Prosite:PS00352 GO:GO:0006355 GO:GO:0003690 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AL844501 InterPro:IPR019844
HSSP:P41016 RefSeq:XP_001351026.1 ProteinModelPortal:Q8I248
EnsemblProtists:PFA0470c:mRNA GeneID:813231 KEGG:pfa:PFA_0470c
HOGENOM:HOG000065787 ProtClustDB:CLSZ2514484 Uniprot:Q8I248
Length = 150
Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 21/43 (48%), Positives = 27/43 (62%)
Query: 8 SGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSI-KSEGFRTLSE 49
+G V F +KG+GFI P DGG D+FVH T I +S F +E
Sbjct: 31 TGNVIMFDKRKGYGFIKPNDGGPDIFVHYTDICQSRTFEVTNE 73
>UNIPROTKB|Q8I248 [details] [associations]
symbol:PFA_0470c "Cold-shock protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003690
"double-stranded DNA binding" evidence=ISS] InterPro:IPR002059
Pfam:PF00313 Prosite:PS00352 GO:GO:0006355 GO:GO:0003690
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AL844501
InterPro:IPR019844 HSSP:P41016 RefSeq:XP_001351026.1
ProteinModelPortal:Q8I248 EnsemblProtists:PFA0470c:mRNA
GeneID:813231 KEGG:pfa:PFA_0470c HOGENOM:HOG000065787
ProtClustDB:CLSZ2514484 Uniprot:Q8I248
Length = 150
Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 21/43 (48%), Positives = 27/43 (62%)
Query: 8 SGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSI-KSEGFRTLSE 49
+G V F +KG+GFI P DGG D+FVH T I +S F +E
Sbjct: 31 TGNVIMFDKRKGYGFIKPNDGGPDIFVHYTDICQSRTFEVTNE 73
>TIGR_CMR|SO_0733 [details] [associations]
symbol:SO_0733 "cold shock domain family protein"
species:211586 "Shewanella oneidensis MR-1" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
SMART:SM00357 GO:GO:0006355 GO:GO:0003677 EMBL:AE014299
GenomeReviews:AE014299_GR Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 HSSP:P15277 InterPro:IPR008613 Pfam:PF05901
SMART:SM00894 RefSeq:NP_716366.1 ProteinModelPortal:Q8EIU8
GeneID:1168588 KEGG:son:SO_0733 PATRIC:23521136
HOGENOM:HOG000281657 OMA:CAEATFY ProtClustDB:CLSK905904
Uniprot:Q8EIU8
Length = 203
Score = 107 (42.7 bits), Expect = 5.8e-06, P = 5.8e-06
Identities = 23/59 (38%), Positives = 36/59 (61%)
Query: 11 VKWFSAQKGFGFIAPEDGG-EDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGRTKAV 68
V+W + +KGFGFI PE G D+F+H +++K R G ++ + +V DG+ KAV
Sbjct: 9 VRW-NEEKGFGFIQPEQSGARDVFIHISALKMMA-RKPKVGDSILYHAEVQHDGKIKAV 65
>ZFIN|ZDB-GENE-040426-1479 [details] [associations]
symbol:carhsp1 "calcium regulated heat stable
protein 1" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
SMART:SM00357 Prosite:PS00352 ZFIN:ZDB-GENE-040426-1479
GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 CTD:23589 eggNOG:NOG239041 HOGENOM:HOG000059524
HOVERGEN:HBG050947 OMA:PDIFVHI OrthoDB:EOG4V4390 InterPro:IPR019844
GeneTree:ENSGT00390000000022 EMBL:CU464204 EMBL:BX936335
EMBL:BC056576 IPI:IPI00490441 RefSeq:NP_956856.1 UniGene:Dr.78003
Ensembl:ENSDART00000075100 Ensembl:ENSDART00000151437 GeneID:393534
KEGG:dre:393534 InParanoid:Q6PHF1 NextBio:20814555 Uniprot:Q6PHF1
Length = 155
Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 20/35 (57%), Positives = 22/35 (62%)
Query: 8 SGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSE 42
SG K FS KG GFI P DGG D+FVH + I E
Sbjct: 72 SGVCKCFSRSKGHGFITPSDGGNDIFVHISDIDGE 106
>UNIPROTKB|Q08E16 [details] [associations]
symbol:CSDC2 "Cold shock domain containing C2, RNA binding"
species:9913 "Bos taurus" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
SMART:SM00357 Prosite:PS00352 GO:GO:0006355 GO:GO:0003677
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
HOGENOM:HOG000059524 HOVERGEN:HBG050947 InterPro:IPR019844
GeneTree:ENSGT00390000000022 CTD:27254 eggNOG:NOG240305 OMA:CHVSDIE
OrthoDB:EOG4WM4W3 EMBL:DAAA02014733 EMBL:BC123465 IPI:IPI00708950
RefSeq:NP_001070345.1 UniGene:Bt.64706 Ensembl:ENSBTAT00000005226
GeneID:525364 KEGG:bta:525364 InParanoid:Q08E16 NextBio:20874148
Uniprot:Q08E16
Length = 153
Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 23/49 (46%), Positives = 28/49 (57%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSV 57
G K FS +G GFI PE+G ED+FVH + I EG EG V + V
Sbjct: 71 GICKQFSRSQGHGFITPENGSEDIFVHVSDI--EGEYVPVEGDEVTYKV 117
>MGI|MGI:2146027 [details] [associations]
symbol:Csdc2 "cold shock domain containing C2, RNA binding"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
SMART:SM00357 Prosite:PS00352 MGI:MGI:2146027 GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 GO:GO:0006397
GO:GO:0003723 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
HOGENOM:HOG000059524 HOVERGEN:HBG050947 InterPro:IPR019844
GeneTree:ENSGT00390000000022 CTD:27254 eggNOG:NOG240305 OMA:CHVSDIE
OrthoDB:EOG4WM4W3 EMBL:AK028916 EMBL:AK132493 EMBL:AC102103
EMBL:BC016109 IPI:IPI00130363 IPI:IPI00954670 RefSeq:NP_663448.2
UniGene:Mm.22524 ProteinModelPortal:Q91YQ3 STRING:Q91YQ3
PhosphoSite:Q91YQ3 PaxDb:Q91YQ3 PRIDE:Q91YQ3
Ensembl:ENSMUST00000038757 GeneID:105859 KEGG:mmu:105859
InParanoid:Q91YQ3 NextBio:357940 CleanEx:MM_CSDC2
Genevestigator:Q91YQ3 GermOnline:ENSMUSG00000042109 Uniprot:Q91YQ3
Length = 154
Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 22/49 (44%), Positives = 28/49 (57%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSV 57
G K FS +G GFI PE+G ED+FVH + I EG EG V + +
Sbjct: 72 GVCKQFSRSQGHGFITPENGSEDIFVHVSDI--EGEYVPVEGDEVTYKI 118
>WB|WBGene00000475 [details] [associations]
symbol:cey-4 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IDA] [GO:0043021 "ribonucleoprotein complex binding"
evidence=IDA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
SMART:SM00357 GO:GO:0006355 GO:GO:0003677 GO:GO:0030529
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0043021
GeneTree:ENSGT00390000009256 EMBL:AL023839 EMBL:Z73424 PIR:T19920
RefSeq:NP_499393.1 HSSP:P41016 ProteinModelPortal:G5EDV3 SMR:G5EDV3
IntAct:G5EDV3 EnsemblMetazoa:Y39A1C.3.1 EnsemblMetazoa:Y39A1C.3.2
GeneID:176516 KEGG:cel:CELE_Y39A1C.3 CTD:176516 WormBase:Y39A1C.3
OMA:VFDIVEG NextBio:892912 Uniprot:G5EDV3
Length = 294
Score = 107 (42.7 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 28/63 (44%), Positives = 35/63 (55%)
Query: 9 GTVKWFSAQKGFGFIA---PEDGGEDLFVHQTSI-KSEGF----RTLSEGQTVEFSVDVG 60
G VKWFS + +GF+A P D ED FVHQT+I KS RTL + + V F + G
Sbjct: 91 GHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPVVFDIVEG 150
Query: 61 EDG 63
G
Sbjct: 151 LKG 153
>UNIPROTKB|F1M549 [details] [associations]
symbol:F1M549 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
SMART:SM00357 GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GeneTree:ENSGT00390000009256
IPI:IPI00764317 Ensembl:ENSRNOT00000013847 Uniprot:F1M549
Length = 305
Score = 107 (42.7 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 26/58 (44%), Positives = 35/58 (60%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG---FRTLSEGQTVEFSVDVGEDG 63
GTVKWF + G+GFI D ED+ V Q +IK+ R++ +G+T EF V GE G
Sbjct: 54 GTVKWF-VRNGYGFINRNDTKEDVCVQQIAIKNNSRKDLRSVGDGET-EFDVVEGEKG 109
>UNIPROTKB|F1NMV8 [details] [associations]
symbol:CSDC2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 SMART:SM00357
Prosite:PS00352 GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844
GeneTree:ENSGT00390000000022 OMA:CHVSDIE EMBL:AADN02006068
IPI:IPI00575708 Ensembl:ENSGALT00000000064 Uniprot:F1NMV8
Length = 162
Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 23/49 (46%), Positives = 28/49 (57%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSV 57
G K FS +G GFI PE+G ED+FVH + I EG EG V + V
Sbjct: 80 GVCKQFSRSQGHGFITPENGTEDIFVHVSDI--EGEYVPVEGDEVTYKV 126
>UNIPROTKB|F1NA94 [details] [associations]
symbol:F1NA94 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GeneTree:ENSGT00390000009256
EMBL:AADN02037767 EMBL:AADN02037762 EMBL:AADN02037763
EMBL:AADN02037764 EMBL:AADN02037765 EMBL:AADN02037766
IPI:IPI00581805 Ensembl:ENSGALT00000023812 ArrayExpress:F1NA94
Uniprot:F1NA94
Length = 214
Score = 103 (41.3 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 24/63 (38%), Positives = 34/63 (53%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDVGEDGR 64
GTVKWF+ + G+GFI + + T+IK R++ +G+TVEF V GE G
Sbjct: 6 GTVKWFNVRNGYGFINRYVARHSVNLDPTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGA 65
Query: 65 TKA 67
A
Sbjct: 66 EAA 68
>ASPGD|ASPL0000008854 [details] [associations]
symbol:AN10761 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR002059
Pfam:PF00313 GO:GO:0006355 GO:GO:0003677 EMBL:BN001301
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
EnsemblFungi:CADANIAT00007080 Uniprot:C8V3H1
Length = 111
Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 23/54 (42%), Positives = 32/54 (59%)
Query: 2 AEVQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEF 55
A R GTVKW++ +GFGFI + GGE L + + SI +E + L EG V +
Sbjct: 42 ASPNRQFGTVKWYNDAQGFGFITSDFGGE-LILRRQSI-TEHTQRLKEGMKVSY 93
>UNIPROTKB|Q9Y534 [details] [associations]
symbol:CSDC2 "Cold shock domain-containing protein C2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=NAS] [GO:0005737
"cytoplasm" evidence=NAS] [GO:0006398 "histone mRNA 3'-end
processing" evidence=NAS] [GO:0003723 "RNA binding" evidence=NAS]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 SMART:SM00357
Prosite:PS00352 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0003677 GO:GO:0003723 EMBL:AL023553 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 HOGENOM:HOG000059524
HOVERGEN:HBG050947 InterPro:IPR019844 GO:GO:0006398 EMBL:AB027011
EMBL:CR456457 EMBL:AL834417 EMBL:BC067113 IPI:IPI00171508
RefSeq:NP_055275.1 UniGene:Hs.310893 ProteinModelPortal:Q9Y534
SMR:Q9Y534 IntAct:Q9Y534 MINT:MINT-6946101 STRING:Q9Y534
PhosphoSite:Q9Y534 DMDM:32129852 PaxDb:Q9Y534 PRIDE:Q9Y534
DNASU:27254 Ensembl:ENST00000306149 GeneID:27254 KEGG:hsa:27254
UCSC:uc003bak.1 CTD:27254 GeneCards:GC22P041956 HGNC:HGNC:30359
HPA:HPA003073 neXtProt:NX_Q9Y534 PharmGKB:PA142672071
eggNOG:NOG240305 InParanoid:Q9Y534 OMA:CHVSDIE OrthoDB:EOG4WM4W3
PhylomeDB:Q9Y534 GenomeRNAi:27254 NextBio:50194 Bgee:Q9Y534
CleanEx:HS_CSDC2 Genevestigator:Q9Y534 GermOnline:ENSG00000172346
Uniprot:Q9Y534
Length = 153
Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 22/49 (44%), Positives = 28/49 (57%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSV 57
G K FS +G GFI PE+G ED+FVH + I EG EG V + +
Sbjct: 71 GVCKQFSRSQGHGFITPENGSEDIFVHVSDI--EGEYVPVEGDEVTYKM 117
>UNIPROTKB|F1SRD7 [details] [associations]
symbol:CSDC2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 SMART:SM00357
Prosite:PS00352 GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844
GeneTree:ENSGT00390000000022 CTD:27254 OMA:CHVSDIE EMBL:CU633382
RefSeq:NP_001230349.1 UniGene:Ssc.3207 Ensembl:ENSSSCT00000000068
GeneID:100153407 KEGG:ssc:100153407 Uniprot:F1SRD7
Length = 153
Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 22/49 (44%), Positives = 28/49 (57%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSV 57
G K FS +G GFI PE+G ED+FVH + I EG EG V + +
Sbjct: 71 GVCKQFSRSQGHGFITPENGSEDIFVHVSDI--EGEYVPVEGDEVTYKM 117
>RGD|628780 [details] [associations]
symbol:Csdc2 "cold shock domain containing C2, RNA binding"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 SMART:SM00357
Prosite:PS00352 RGD:628780 GO:GO:0005634 GO:GO:0005737
GO:GO:0006355 GO:GO:0003677 GO:GO:0006397 GO:GO:0003723
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
HOGENOM:HOG000059524 HOVERGEN:HBG050947 InterPro:IPR019844
GeneTree:ENSGT00390000000022 CTD:27254 eggNOG:NOG240305 OMA:CHVSDIE
OrthoDB:EOG4WM4W3 EMBL:X89962 IPI:IPI00209017 PIR:JC4588
RefSeq:NP_001164013.1 UniGene:Rn.1171 ProteinModelPortal:Q63430
STRING:Q63430 Ensembl:ENSRNOT00000007091 GeneID:266600
KEGG:rno:266600 UCSC:RGD:628780 InParanoid:Q63430 NextBio:624402
Genevestigator:Q63430 GermOnline:ENSRNOG00000005332 Uniprot:Q63430
Length = 154
Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 22/49 (44%), Positives = 28/49 (57%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSV 57
G K FS +G GFI PE+G ED+FVH + I EG EG V + +
Sbjct: 72 GVCKQFSRSQGHGFITPENGSEDIFVHVSDI--EGEYVPVEGDEVTYKM 118
>UNIPROTKB|F1M451 [details] [associations]
symbol:F1M451 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR002059 Pfam:PF00313 PRINTS:PR00050
GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GeneTree:ENSGT00390000009256 IPI:IPI00569917
Ensembl:ENSRNOT00000034688 OMA:NQQPATS Uniprot:F1M451
Length = 147
Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG---FRTLSEGQTVE 54
G V WF+ + G+ FI D ED FVHQT IK ++ +G+TVE
Sbjct: 98 GIVTWFNVRNGYVFINRNDTKEDTFVHQTVIKKNNPKYLHSVGDGETVE 146
>UNIPROTKB|F1M1T6 [details] [associations]
symbol:F1M1T6 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
SMART:SM00357 GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 IPI:IPI00560842
Ensembl:ENSRNOT00000031766 ArrayExpress:F1M1T6 Uniprot:F1M1T6
Length = 309
Score = 105 (42.0 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 25/59 (42%), Positives = 35/59 (59%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDVGEDG 63
GT+KWF+ + GF I D ED+FVHQT++K + R + +G+T F V GE G
Sbjct: 62 GTIKWFNERNGF--INRNDTKEDVFVHQTAVKKKNPRKNLRRVGDGET-GFDVVEGEKG 117
>UNIPROTKB|E1C8P8 [details] [associations]
symbol:CARHSP1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00313 SMART:SM00357 Prosite:PS00352
GO:GO:0006355 GO:GO:0003677 GO:GO:0003730 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 CTD:23589 OMA:PDIFVHI
InterPro:IPR019844 GeneTree:ENSGT00390000000022 EMBL:AADN02023448
EMBL:AADN02023449 EMBL:AADN02023450 EMBL:AADN02023451
EMBL:AADN02023452 EMBL:AADN02023453 EMBL:AADN02023454
IPI:IPI00591072 RefSeq:XP_414938.2 ProteinModelPortal:E1C8P8
PRIDE:E1C8P8 Ensembl:ENSGALT00000011834 GeneID:416640
KEGG:gga:416640 NextBio:20820068 Uniprot:E1C8P8
Length = 152
Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 22/62 (35%), Positives = 33/62 (53%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGRTKAV 68
G K F KG GFI+P DGG D+FVH + I+ E + T + ++ + +AV
Sbjct: 70 GVCKCFCRSKGHGFISPADGGPDIFVHISDIEGEYVPVSGDEVTYKVCTIPPKNEKLQAV 129
Query: 69 DV 70
+V
Sbjct: 130 EV 131
>UNIPROTKB|I3LFV4 [details] [associations]
symbol:YBX1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 PRINTS:PR00050
SMART:SM00357 GO:GO:0001701 GO:GO:0000122 GO:GO:0003697
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0010494
GeneTree:ENSGT00390000009256 GO:GO:0005689 GO:GO:0070937
GO:GO:0070934 GO:GO:0071204 GO:GO:0051154 OMA:VEGADNQ EMBL:CU929642
EMBL:CU467721 Ensembl:ENSSSCT00000026666 Uniprot:I3LFV4
Length = 324
Score = 104 (41.7 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 24/59 (40%), Positives = 32/59 (54%)
Query: 13 WFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDVGEDGRTKA 67
WF K ++ D ED+FVHQT+IK R++ +G+TVEF V GE G A
Sbjct: 65 WFLQNKFDAYLKLNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAA 123
>FB|FBgn0036661 [details] [associations]
symbol:CG9705 species:7227 "Drosophila melanogaster"
[GO:0005575 "cellular_component" evidence=ND] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00313 SMART:SM00357 Prosite:PS00352 EMBL:AE014296
GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 eggNOG:NOG239041 InterPro:IPR019844
GeneTree:ENSGT00390000000022 OMA:CHVSDIE EMBL:AY060441
RefSeq:NP_648920.1 RefSeq:NP_730197.1 UniGene:Dm.7196 HSSP:P0A9X9
ProteinModelPortal:Q9VVA0 SMR:Q9VVA0 MINT:MINT-760000 STRING:Q9VVA0
PaxDb:Q9VVA0 PRIDE:Q9VVA0 EnsemblMetazoa:FBtr0075324
EnsemblMetazoa:FBtr0075325 EnsemblMetazoa:FBtr0333607 GeneID:39875
KEGG:dme:Dmel_CG9705 UCSC:CG9705-RA FlyBase:FBgn0036661
InParanoid:Q9VVA0 OrthoDB:EOG4STQN2 PhylomeDB:Q9VVA0 ChiTaRS:CG9705
GenomeRNAi:39875 NextBio:815832 Bgee:Q9VVA0 Uniprot:Q9VVA0
Length = 143
Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 8 SGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSE 42
+G VK FS KG GFI P GGED+F H + I+ E
Sbjct: 56 TGMVKSFSRTKGHGFITPNAGGEDVFCHVSDIEGE 90
>ZFIN|ZDB-GENE-040718-442 [details] [associations]
symbol:csdc2a "cold shock domain containing C2, RNA
binding a" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 SMART:SM00357
Prosite:PS00352 ZFIN:ZDB-GENE-040718-442 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
HOGENOM:HOG000059524 HOVERGEN:HBG050947 InterPro:IPR019844
eggNOG:NOG240305 OrthoDB:EOG4WM4W3 EMBL:BC076447 IPI:IPI00486145
RefSeq:NP_001002690.1 UniGene:Dr.87298 ProteinModelPortal:Q6DGA4
GeneID:436963 KEGG:dre:436963 CTD:436963 InParanoid:Q6DGA4
NextBio:20831386 Uniprot:Q6DGA4
Length = 153
Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 23/49 (46%), Positives = 27/49 (55%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSV 57
G K FS +G GFI P GGED+FVH + I EG EG V + V
Sbjct: 71 GICKNFSRSQGHGFIRPSHGGEDIFVHISDI--EGEYVPMEGDEVTYKV 117
>TIGR_CMR|CPS_0148 [details] [associations]
symbol:CPS_0148 "cold-shock DNA-binding domain family
protein" species:167879 "Colwellia psychrerythraea 34H" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00313 SMART:SM00357 GO:GO:0006355
GO:GO:0003677 EMBL:CP000083 GenomeReviews:CP000083_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
RefSeq:YP_266916.1 ProteinModelPortal:Q48AJ7 STRING:Q48AJ7
DNASU:3522041 GeneID:3522041 KEGG:cps:CPS_0148 PATRIC:21463711
eggNOG:NOG243910 HOGENOM:HOG000267103 OMA:KFILWLT
BioCyc:CPSY167879:GI48-251-MONOMER InterPro:IPR010718 Pfam:PF06961
Uniprot:Q48AJ7
Length = 201
Score = 98 (39.6 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 11 VKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGR 64
++W + K FGFI P G+ +F+H+T++K+ RT + FSV GR
Sbjct: 8 IRW-NTDKAFGFITPNGSGDTIFIHKTALKNRN-RTPKINDIISFSVIQDNQGR 59
>UNIPROTKB|C9J5V9 [details] [associations]
symbol:YBX1 "Nuclease-sensitive element-binding protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IDA]
InterPro:IPR002059 Pfam:PF00313 PRINTS:PR00050 GO:GO:0043231
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AC098484
HOGENOM:HOG000116439 HGNC:HGNC:8014 IPI:IPI00643807
ProteinModelPortal:C9J5V9 SMR:C9J5V9 STRING:C9J5V9 PRIDE:C9J5V9
Ensembl:ENST00000332220 ArrayExpress:C9J5V9 Bgee:C9J5V9
Uniprot:C9J5V9
Length = 216
Score = 97 (39.2 bits), Expect = 9.8e-05, P = 9.8e-05
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQ 36
GTVKWF+ + G+GFI D ED+FVHQ
Sbjct: 61 GTVKWFNVRNGYGFINRNDTKEDVFVHQ 88
>UNIPROTKB|Q2NKU4 [details] [associations]
symbol:CARHSP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00313 SMART:SM00357 Prosite:PS00352
GO:GO:0006355 GO:GO:0003677 GO:GO:0003730 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 CTD:23589 eggNOG:NOG239041
HOGENOM:HOG000059524 HOVERGEN:HBG050947 OMA:PDIFVHI
OrthoDB:EOG4V4390 InterPro:IPR019844 GeneTree:ENSGT00390000000022
EMBL:DAAA02057413 EMBL:BC111637 IPI:IPI00685329
RefSeq:NP_001039416.1 UniGene:Bt.88637 Ensembl:ENSBTAT00000001890
GeneID:506760 KEGG:bta:506760 InParanoid:Q2NKU4 NextBio:20867742
Uniprot:Q2NKU4
Length = 147
Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
Identities = 20/49 (40%), Positives = 26/49 (53%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSV 57
G K F KG GFI P DGG D+F+H + + EG EG V + +
Sbjct: 65 GVCKCFCRSKGHGFITPADGGPDIFLHISDV--EGEYVPMEGDEVTYKM 111
>UNIPROTKB|E2R913 [details] [associations]
symbol:CARHSP1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
SMART:SM00357 Prosite:PS00352 GO:GO:0006355 GO:GO:0003677
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 OMA:PDIFVHI
InterPro:IPR019844 GeneTree:ENSGT00390000000022 EMBL:AAEX03004556
Ensembl:ENSCAFT00000030174 Uniprot:E2R913
Length = 154
Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
Identities = 20/49 (40%), Positives = 26/49 (53%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSV 57
G K F KG GFI P DGG D+F+H + + EG EG V + +
Sbjct: 72 GVCKCFCRSKGHGFITPADGGPDIFLHISDV--EGEYVPVEGDEVTYKM 118
>UNIPROTKB|H3BNU9 [details] [associations]
symbol:CARHSP1 "Calcium-regulated heat stable protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
HGNC:HGNC:17150 InterPro:IPR019844 EMBL:AC022167 PRIDE:H3BNU9
Ensembl:ENST00000565287 Bgee:H3BNU9 Uniprot:H3BNU9
Length = 131
Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
Identities = 20/49 (40%), Positives = 26/49 (53%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSV 57
G K F KG GFI P DGG D+F+H + + EG EG V + +
Sbjct: 65 GVCKCFCRSKGHGFITPADGGPDIFLHISDV--EGEYVPVEGDEVTYKM 111
>UNIPROTKB|H3BPY5 [details] [associations]
symbol:CARHSP1 "Calcium-regulated heat stable protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
HGNC:HGNC:17150 InterPro:IPR019844 EMBL:AC022167 PRIDE:H3BPY5
Ensembl:ENST00000567908 Bgee:H3BPY5 Uniprot:H3BPY5
Length = 126
Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
Identities = 20/49 (40%), Positives = 26/49 (53%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSV 57
G K F KG GFI P DGG D+F+H + + EG EG V + +
Sbjct: 65 GVCKCFCRSKGHGFITPADGGPDIFLHISDV--EGEYVPVEGDEVTYKM 111
>UNIPROTKB|H3BSW7 [details] [associations]
symbol:CARHSP1 "Calcium-regulated heat stable protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
HGNC:HGNC:17150 InterPro:IPR019844 EMBL:AC022167 PRIDE:H3BSW7
Ensembl:ENST00000568117 Bgee:H3BSW7 Uniprot:H3BSW7
Length = 112
Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
Identities = 20/49 (40%), Positives = 26/49 (53%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSV 57
G K F KG GFI P DGG D+F+H + + EG EG V + +
Sbjct: 65 GVCKCFCRSKGHGFITPADGGPDIFLHISDV--EGEYVPVEGDEVTYKM 111
>UNIPROTKB|H3BUY4 [details] [associations]
symbol:CARHSP1 "Calcium-regulated heat stable protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
HGNC:HGNC:17150 InterPro:IPR019844 EMBL:AC022167 PRIDE:H3BUY4
Ensembl:ENST00000570125 Bgee:H3BUY4 Uniprot:H3BUY4
Length = 124
Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
Identities = 20/49 (40%), Positives = 26/49 (53%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSV 57
G K F KG GFI P DGG D+F+H + + EG EG V + +
Sbjct: 65 GVCKCFCRSKGHGFITPADGGPDIFLHISDV--EGEYVPVEGDEVTYKM 111
>UNIPROTKB|Q9Y2V2 [details] [associations]
symbol:CARHSP1 "Calcium-regulated heat stable protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0019902 "phosphatase binding" evidence=NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA] [GO:0043488
"regulation of mRNA stability" evidence=ISS] [GO:0005829 "cytosol"
evidence=ISS] [GO:0043186 "P granule" evidence=ISS] [GO:0000177
"cytoplasmic exosome (RNase complex)" evidence=ISS] [GO:0035556
"intracellular signal transduction" evidence=TAS]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 SMART:SM00357
Prosite:PS00352 GO:GO:0005829 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 EMBL:CH471112 GO:GO:0003730 GO:GO:0000932
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0043488
GO:GO:0019902 EMBL:AF115345 EMBL:AK311777 EMBL:BC003366
EMBL:BC108283 IPI:IPI00304409 RefSeq:NP_001035941.1
RefSeq:NP_055131.2 UniGene:Hs.632184 PDB:3AQQ PDBsum:3AQQ
ProteinModelPortal:Q9Y2V2 SMR:Q9Y2V2 IntAct:Q9Y2V2
MINT:MINT-1432836 STRING:Q9Y2V2 PhosphoSite:Q9Y2V2 DMDM:41016932
PaxDb:Q9Y2V2 PeptideAtlas:Q9Y2V2 PRIDE:Q9Y2V2 DNASU:23589
Ensembl:ENST00000311052 Ensembl:ENST00000396593
Ensembl:ENST00000561530 Ensembl:ENST00000567554 GeneID:23589
KEGG:hsa:23589 UCSC:uc002czh.1 CTD:23589 GeneCards:GC16M008946
HGNC:HGNC:17150 HPA:HPA051911 neXtProt:NX_Q9Y2V2 PharmGKB:PA38440
eggNOG:NOG239041 HOGENOM:HOG000059524 HOVERGEN:HBG050947
InParanoid:Q9Y2V2 OMA:PDIFVHI OrthoDB:EOG4V4390 PhylomeDB:Q9Y2V2
GenomeRNAi:23589 NextBio:46226 Bgee:Q9Y2V2 CleanEx:HS_CARHSP1
Genevestigator:Q9Y2V2 GermOnline:ENSG00000153048 GO:GO:0043186
InterPro:IPR019844 Uniprot:Q9Y2V2
Length = 147
Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
Identities = 20/49 (40%), Positives = 26/49 (53%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSV 57
G K F KG GFI P DGG D+F+H + + EG EG V + +
Sbjct: 65 GVCKCFCRSKGHGFITPADGGPDIFLHISDV--EGEYVPVEGDEVTYKM 111
>UNIPROTKB|I3LCU9 [details] [associations]
symbol:CARHSP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00313 SMART:SM00357 Prosite:PS00352
GO:GO:0006355 GO:GO:0003677 GO:GO:0003730 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 OMA:PDIFVHI InterPro:IPR019844
GeneTree:ENSGT00390000000022 EMBL:FP089531
Ensembl:ENSSSCT00000026974 Uniprot:I3LCU9
Length = 158
Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
Identities = 20/49 (40%), Positives = 26/49 (53%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSV 57
G K F KG GFI P DGG D+F+H + + EG EG V + +
Sbjct: 76 GVCKCFCRSKGHGFITPADGGPDIFLHISDV--EGEYVPVEGDEVTYKM 122
>MGI|MGI:1196368 [details] [associations]
symbol:Carhsp1 "calcium regulated heat stable protein 1"
species:10090 "Mus musculus" [GO:0000177 "cytoplasmic exosome
(RNase complex)" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043186 "P granule" evidence=IDA]
[GO:0043488 "regulation of mRNA stability" evidence=IMP]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 SMART:SM00357
Prosite:PS00352 MGI:MGI:1196368 GO:GO:0005829 GO:GO:0006355
GO:GO:0003677 GO:GO:0003730 GO:GO:0000932 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0043488 CTD:23589
eggNOG:NOG239041 HOGENOM:HOG000059524 HOVERGEN:HBG050947
OMA:PDIFVHI OrthoDB:EOG4V4390 GO:GO:0043186 InterPro:IPR019844
EMBL:AF414101 EMBL:AK004711 EMBL:AK002853 EMBL:AK003926
EMBL:BC011225 IPI:IPI00133349 RefSeq:NP_080097.1 UniGene:Mm.142095
ProteinModelPortal:Q9CR86 SMR:Q9CR86 STRING:Q9CR86
PhosphoSite:Q9CR86 PaxDb:Q9CR86 PRIDE:Q9CR86
Ensembl:ENSMUST00000008537 GeneID:52502 KEGG:mmu:52502
GeneTree:ENSGT00390000000022 InParanoid:Q9CR86 ChiTaRS:CARHSP1
NextBio:448331 Bgee:Q9CR86 CleanEx:MM_CARHSP1 Genevestigator:Q9CR86
GermOnline:ENSMUSG00000008393 Uniprot:Q9CR86
Length = 148
Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
Identities = 20/49 (40%), Positives = 26/49 (53%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSV 57
G K F KG GFI P DGG D+F+H + + EG EG V + +
Sbjct: 66 GVCKCFCRSKGHGFITPADGGPDIFLHISDV--EGEYVPVEGDEVTYKM 112
>RGD|708415 [details] [associations]
symbol:Carhsp1 "calcium regulated heat stable protein 1"
species:10116 "Rattus norvegicus" [GO:0000177 "cytoplasmic exosome
(RNase complex)" evidence=ISO;ISS] [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=ISO;ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0019722 "calcium-mediated
signaling" evidence=NAS] [GO:0043186 "P granule" evidence=ISO;ISS]
[GO:0043488 "regulation of mRNA stability" evidence=ISO;ISS]
InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313 SMART:SM00357
Prosite:PS00352 RGD:708415 GO:GO:0005829 GO:GO:0006355
GO:GO:0003677 GO:GO:0019722 GO:GO:0003730 GO:GO:0000932
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0043488
CTD:23589 eggNOG:NOG239041 HOGENOM:HOG000059524 HOVERGEN:HBG050947
OMA:PDIFVHI OrthoDB:EOG4V4390 GO:GO:0043186 InterPro:IPR019844
GeneTree:ENSGT00390000000022 EMBL:AF115346 EMBL:BC071173
IPI:IPI00201548 RefSeq:NP_690003.1 UniGene:Rn.14584
ProteinModelPortal:Q9WU49 STRING:Q9WU49 PhosphoSite:Q9WU49
PRIDE:Q9WU49 Ensembl:ENSRNOT00000003514 GeneID:260416
KEGG:rno:260416 UCSC:RGD:708415 InParanoid:Q9WU49 NextBio:624378
Genevestigator:Q9WU49 GermOnline:ENSRNOG00000002610 Uniprot:Q9WU49
Length = 147
Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
Identities = 20/49 (40%), Positives = 26/49 (53%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSV 57
G K F KG GFI P DGG D+F+H + + EG EG V + +
Sbjct: 65 GVCKCFCRSKGHGFITPADGGPDIFLHISDV--EGEYVPVEGDEVTYKM 111
>UNIPROTKB|E2RRI6 [details] [associations]
symbol:CSDC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
SMART:SM00357 GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GeneTree:ENSGT00390000000022
OMA:CHVSDIE EMBL:AAEX03007296 Ensembl:ENSCAFT00000001614
Uniprot:E2RRI6
Length = 159
Score = 91 (37.1 bits), Expect = 0.00018, P = 0.00018
Identities = 23/63 (36%), Positives = 35/63 (55%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQT-SIKSEGFRTLSEGQTVEFSVDVGEDGRTKA 67
G K FS +G GFI PE+G ED+FVH + +I+ E S T + ++ + +A
Sbjct: 76 GVCKQFSRSQGHGFITPENGSEDIFVHVSDNIQGEYLPMESHQVTYKMCPIPPKNQKFQA 135
Query: 68 VDV 70
V+V
Sbjct: 136 VEV 138
>UNIPROTKB|H7C4E7 [details] [associations]
symbol:CSDC2 "Cold shock domain-containing protein C2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR002059 Pfam:PF00313 GO:GO:0006355
GO:GO:0003677 EMBL:AL023553 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 HGNC:HGNC:30359 EMBL:Z83840 Ensembl:ENST00000460790
Bgee:H7C4E7 Uniprot:H7C4E7
Length = 151
Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
Identities = 16/27 (59%), Positives = 19/27 (70%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVH 35
G K FS +G GFI PE+G ED+FVH
Sbjct: 54 GVCKQFSRSQGHGFITPENGSEDIFVH 80
>ZFIN|ZDB-GENE-110419-1 [details] [associations]
symbol:csdc2b "cold shock domain containing C2, RNA
binding b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
SMART:SM00357 Prosite:PS00352 ZFIN:ZDB-GENE-110419-1 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 GeneTree:ENSGT00390000000022 EMBL:CABZ01117704
EMBL:CABZ01117705 EMBL:CABZ01117706 IPI:IPI00863650
Ensembl:ENSDART00000099055 Bgee:F1QHR6 Uniprot:F1QHR6
Length = 162
Score = 89 (36.4 bits), Expect = 0.00034, P = 0.00034
Identities = 24/64 (37%), Positives = 35/64 (54%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDV--GEDGRTK 66
G K FS +G GFI P GG+D+F H + I EG EG V + V + ++ + +
Sbjct: 80 GVCKDFSRSQGHGFIKPAHGGDDIFFHISDI--EGEYVPVEGDEVTYKVCLIPPKNVKVQ 137
Query: 67 AVDV 70
AV+V
Sbjct: 138 AVEV 141
>UNIPROTKB|P0A982 [details] [associations]
symbol:cspH "stress protein, member of the CspA family"
species:83333 "Escherichia coli K-12" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 Pfam:PF00313
PIRSF:PIRSF002599 SMART:SM00357 Prosite:PS00352 GO:GO:0005737
GO:GO:0006355 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0006351
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704
EMBL:AF003591 PIR:C64840 RefSeq:NP_415509.1 RefSeq:YP_489261.1
ProteinModelPortal:P0A982 SMR:P0A982
EnsemblBacteria:EBESCT00000002155 EnsemblBacteria:EBESCT00000014860
GeneID:12931041 GeneID:945590 KEGG:ecj:Y75_p0961 KEGG:eco:b0989
PATRIC:32117203 EchoBASE:EB4029 EcoGene:EG14281 OMA:IEFCRIN
ProtClustDB:PRK15464 BioCyc:EcoCyc:G6510-MONOMER
BioCyc:ECOL316407:JW5134-MONOMER Genevestigator:P0A982
Uniprot:P0A982
Length = 70
Score = 85 (35.0 bits), Expect = 0.00073, P = 0.00072
Identities = 22/63 (34%), Positives = 31/63 (49%)
Query: 5 QRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGR 64
++ +G VK F + G GFI P DG +++ VH ++ L G VEF G G
Sbjct: 3 RKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGP 62
Query: 65 TKA 67
T A
Sbjct: 63 TAA 65
>RGD|2324048 [details] [associations]
symbol:LOC100366210 "Y box binding protein 1-like" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR002059 Pfam:PF00313 PRINTS:PR00050
RGD:2324048 GO:GO:0006355 GO:GO:0003677 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 IPI:IPI00779316
Ensembl:ENSRNOT00000061547 OMA:SAVACRD Uniprot:F1LX40
Length = 292
Score = 91 (37.1 bits), Expect = 0.00085, P = 0.00085
Identities = 27/69 (39%), Positives = 35/69 (50%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDVGEDGR 64
GT+K G G I D ED+FVHQT++K R++ + +TVEF GE
Sbjct: 33 GTMKCSIVWNGCGLINRNDTKEDVFVHQTAMKKNDPRKYLRSVGDAETVEFDFVEGEK-- 90
Query: 65 TKAVDVEAA 73
DVEAA
Sbjct: 91 ----DVEAA 95
>UNIPROTKB|I3L3X8 [details] [associations]
symbol:CARHSP1 "Calcium-regulated heat stable protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR002059 Pfam:PF00313 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
HGNC:HGNC:17150 EMBL:AC022167 ProteinModelPortal:I3L3X8 SMR:I3L3X8
PRIDE:I3L3X8 Ensembl:ENST00000562843 Bgee:I3L3X8 Uniprot:I3L3X8
Length = 94
Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVH 35
G K F KG GFI P DGG D+F+H
Sbjct: 65 GVCKCFCRSKGHGFITPADGGPDIFLH 91
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.135 0.413 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 169 93 0.00091 102 3 11 22 0.37 30
29 0.41 31
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 172
No. of states in DFA: 544 (58 KB)
Total size of DFA: 109 KB (2074 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 8.03u 0.21s 8.24t Elapsed: 00:00:01
Total cpu time: 8.04u 0.22s 8.26t Elapsed: 00:00:01
Start: Fri May 10 03:15:51 2013 End: Fri May 10 03:15:52 2013
WARNINGS ISSUED: 1