BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030905
(169 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O65639|CSP1_ARATH Cold shock protein 1 OS=Arabidopsis thaliana GN=CSP1 PE=2 SV=1
Length = 299
Score = 120 bits (300), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 79/172 (45%), Positives = 95/172 (55%), Gaps = 11/172 (6%)
Query: 6 RSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGRT 65
RS+G V WF+A KG+GFI P+DG +LFVHQ+SI SEG+R+L+ G VEF++ G DG+T
Sbjct: 10 RSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKT 69
Query: 66 KAVDVEAASRSRRFGSRGGRSGGFYGGRGRGGGYGRGGRGGRS----------VGSGGGA 115
KAV+V A R G G G G Y G G S G
Sbjct: 70 KAVNVTAPGGGSLKKENNSRGNGARRGGGGSGCYNCGELGHISKDCGIGGGGGGGERRSR 129
Query: 116 GSGACFNCGRTGHIARECYSRGRGGGRGYGGGRGGGGCYNCGEEGHFARDCP 167
G C+NCG TGH AR+C S G G RG G G GCY CG+ GH ARDC
Sbjct: 130 GGEGCYNCGDTGHFARDCTSAGNGDQRGATKG-GNDGCYTCGDVGHVARDCT 180
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 39/71 (54%), Gaps = 17/71 (23%)
Query: 113 GGAGSGACFNCGRTGHIARECYSR---GRG--------------GGRGYGGGRGGGGCYN 155
GG GSG C++CG GHIAR+C ++ RG RG GGG CY
Sbjct: 225 GGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCGGSGHLARDCDQRGSGGGGNDNACYK 284
Query: 156 CGEEGHFARDC 166
CG+EGHFAR+C
Sbjct: 285 CGKEGHFAREC 295
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 22/39 (56%)
Query: 97 GGYGRGGRGGRSVGSGGGAGSGACFNCGRTGHIARECYS 135
GG G R GSGGG AC+ CG+ GH AREC S
Sbjct: 259 GGSGHLARDCDQRGSGGGGNDNACYKCGKEGHFARECSS 297
>sp|Q94C69|CSP3_ARATH Cold shock domain-containing protein 3 OS=Arabidopsis thaliana
GN=CSP3 PE=2 SV=1
Length = 301
Score = 113 bits (283), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 92/164 (56%), Gaps = 31/164 (18%)
Query: 6 RSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGRT 65
RS G V WFS KG+GFI P+DGGE+LFVHQ+SI S+GFR+L+ G++VE+ + +G DG+T
Sbjct: 10 RSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDGKT 69
Query: 66 KAVDVEAASRSRRFGSRGGRSGGFYGGRGRGGGYGRGGRGGRSVGSGGGAGSGACFNCGR 125
KA++V A GG + S GSGG CFNCG
Sbjct: 70 KAIEVTAP-----------------------GGGSLNKKENSSRGSGGN-----CFNCGE 101
Query: 126 TGHIAREC---YSRGRGGGRGYGGGRGGGGCYNCGEEGHFARDC 166
GH+A++C GG G G G CY CG+ GHFARDC
Sbjct: 102 VGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFARDC 145
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 33/50 (66%), Gaps = 3/50 (6%)
Query: 119 ACFNCGRTGHIARECYSRGRGGGRGYGGGRGGGGCYNCGEEGHFARDCPN 168
AC+ CG TGH+AR+C R G GGG G C+ CG+EGHFAR+C +
Sbjct: 253 ACYECGGTGHLARDC---DRRGSGSSGGGGGSNKCFICGKEGHFARECTS 299
>sp|Q38896|CSP4_ARATH Cold shock domain-containing protein 4 OS=Arabidopsis thaliana
GN=CSP4 PE=1 SV=1
Length = 201
Score = 109 bits (272), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 90/183 (49%), Positives = 105/183 (57%), Gaps = 21/183 (11%)
Query: 5 QRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGR 64
R GTVKWF QKGFGFI P DGG+DLFVHQ+SI+SEGFR+L+ ++VEF V+V GR
Sbjct: 13 DRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSGR 72
Query: 65 TKAVDVEAASRSRRFGS----------RGGRSGGFYGGRGRGGGYGRGGRGGRSVGSGGG 114
KA++V + G+ G GG GG GG YG G G S G GGG
Sbjct: 73 PKAIEVSGPDGAPVQGNSGGGGSSGGRGGFGGGGGRGGGRGGGSYGGGYGGRGSGGRGGG 132
Query: 115 AGSGACFNCGRTGHIARECYSRGRGGGRGYGGGRGGG-----------GCYNCGEEGHFA 163
G +CF CG GH+AREC G G G GGGR G CY+CGE GHFA
Sbjct: 133 GGDNSCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFA 192
Query: 164 RDC 166
RDC
Sbjct: 193 RDC 195
>sp|P27484|GRP2_NICSY Glycine-rich protein 2 OS=Nicotiana sylvestris GN=GRP-2 PE=2 SV=1
Length = 214
Score = 107 bits (268), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/72 (75%), Positives = 62/72 (86%), Gaps = 2/72 (2%)
Query: 1 MAEV--QRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVD 58
MAE QR+ GTVKWFS QKGFGFI P+DGGEDLFVHQ+ I+SEGFR+L+EG+TVEF V+
Sbjct: 1 MAEESGQRAKGTVKWFSDQKGFGFITPDDGGEDLFVHQSGIRSEGFRSLAEGETVEFEVE 60
Query: 59 VGEDGRTKAVDV 70
G DGRTKAVDV
Sbjct: 61 SGGDGRTKAVDV 72
>sp|Q41188|CSP2_ARATH Cold shock protein 2 OS=Arabidopsis thaliana GN=CSP2 PE=1 SV=1
Length = 203
Score = 90.5 bits (223), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 90/190 (47%), Positives = 109/190 (57%), Gaps = 28/190 (14%)
Query: 5 QRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGR 64
+R G+VKWF QKGFGFI P+DGG+DLFVHQ+SI+SEGFR+L+ + VEF V++ + R
Sbjct: 9 ERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNNR 68
Query: 65 TKAVDVEAASRSRRFGSRGGRSGGFYGGRGRGGGYGRGGRGGRSVGSGGGAGSGA----- 119
KA+DV + G+ GG S G GG G G G GRG GG G GG G G
Sbjct: 69 PKAIDVSGPDGAPVQGNSGGGSSGGRGGFGGGRGGGRGSGGGYGGGGGGYGGRGGGGRGG 128
Query: 120 --CFNCGRTGHIAREC---------------------YSRGRGGGRGYGGGRGGGGCYNC 156
C+ CG GH+AR+C G GG G GGG GGG CY+C
Sbjct: 129 SDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGGGGGSCYSC 188
Query: 157 GEEGHFARDC 166
GE GHFARDC
Sbjct: 189 GESGHFARDC 198
>sp|P0A981|CSPG_SHIFL Cold shock-like protein CspG OS=Shigella flexneri GN=cspG PE=3
SV=1
Length = 70
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/62 (56%), Positives = 47/62 (75%)
Query: 6 RSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGRT 65
+ +G VKWF+A KGFGFI P+DG +D+FVH T+I+S FRTL+E Q VEFS++ G+ G
Sbjct: 4 KMTGLVKWFNADKGFGFITPDDGSKDVFVHFTAIQSNEFRTLNENQKVEFSIEQGQRGPA 63
Query: 66 KA 67
A
Sbjct: 64 AA 65
>sp|P0A978|CSPG_ECOLI Cold shock-like protein CspG OS=Escherichia coli (strain K12)
GN=cspG PE=1 SV=1
Length = 70
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/62 (56%), Positives = 47/62 (75%)
Query: 6 RSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGRT 65
+ +G VKWF+A KGFGFI P+DG +D+FVH T+I+S FRTL+E Q VEFS++ G+ G
Sbjct: 4 KMTGLVKWFNADKGFGFITPDDGSKDVFVHFTAIQSNEFRTLNENQKVEFSIEQGQRGPA 63
Query: 66 KA 67
A
Sbjct: 64 AA 65
>sp|P0A979|CSPG_ECOL6 Cold shock-like protein CspG OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=cspG PE=3 SV=1
Length = 70
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/62 (56%), Positives = 47/62 (75%)
Query: 6 RSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGRT 65
+ +G VKWF+A KGFGFI P+DG +D+FVH T+I+S FRTL+E Q VEFS++ G+ G
Sbjct: 4 KMTGLVKWFNADKGFGFITPDDGSKDVFVHFTAIQSNEFRTLNENQKVEFSIEQGQRGPA 63
Query: 66 KA 67
A
Sbjct: 64 AA 65
>sp|P0A980|CSPG_ECO57 Cold shock-like protein CspG OS=Escherichia coli O157:H7 GN=cspG
PE=3 SV=1
Length = 70
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/62 (56%), Positives = 47/62 (75%)
Query: 6 RSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGRT 65
+ +G VKWF+A KGFGFI P+DG +D+FVH T+I+S FRTL+E Q VEFS++ G+ G
Sbjct: 4 KMTGLVKWFNADKGFGFITPDDGSKDVFVHFTAIQSNEFRTLNENQKVEFSIEQGQRGPA 63
Query: 66 KA 67
A
Sbjct: 64 AA 65
>sp|P72188|CAPA_PSEFR Cold shock protein CapA (Fragment) OS=Pseudomonas fragi GN=capA
PE=2 SV=1
Length = 64
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/59 (61%), Positives = 47/59 (79%)
Query: 5 QRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDG 63
QR SGTVKWF+ +KGFGFI P+ GG+DLFVH +I+S+GF++L EGQTV F + G+ G
Sbjct: 3 QRQSGTVKWFNDEKGFGFITPQGGGDDLFVHFKAIESDGFKSLKEGQTVSFVAEKGQKG 61
>sp|P0CL01|CSPJ_SALTY Cold shock-like protein CspJ OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=cspJ PE=3 SV=1
Length = 70
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 51/68 (75%), Gaps = 1/68 (1%)
Query: 6 RSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGRT 65
+ +G VKWF+ +KGFGFI P+DG +D+FVH ++I+S FRTL+E Q VEFSV+ G G +
Sbjct: 4 KITGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNEFRTLNENQEVEFSVEQGPKGPS 63
Query: 66 KAVDVEAA 73
AV+V A
Sbjct: 64 -AVNVVAL 70
>sp|E1WGN1|CSPJ_SALTS Cold shock-like protein CspJ OS=Salmonella typhimurium (strain
SL1344) GN=cspJ PE=2 SV=1
Length = 70
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 51/68 (75%), Gaps = 1/68 (1%)
Query: 6 RSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGRT 65
+ +G VKWF+ +KGFGFI P+DG +D+FVH ++I+S FRTL+E Q VEFSV+ G G +
Sbjct: 4 KITGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNEFRTLNENQEVEFSVEQGPKGPS 63
Query: 66 KAVDVEAA 73
AV+V A
Sbjct: 64 -AVNVVAL 70
>sp|Q89A90|CSPE_BUCBP Cold shock-like protein CspE OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=cspE PE=3 SV=3
Length = 69
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 47/64 (73%)
Query: 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDG 63
+ + G VKWF+ KGFGFI PEDG +D+FVH ++I+S GF+TLSEGQ+VEF + G G
Sbjct: 1 MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQSNGFKTLSEGQSVEFEITEGAKG 60
Query: 64 RTKA 67
+ A
Sbjct: 61 PSAA 64
>sp|A0R5E1|CSPA_MYCS2 Probable cold shock protein A OS=Mycobacterium smegmatis (strain
ATCC 700084 / mc(2)155) GN=cspA PE=1 SV=1
Length = 67
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/51 (68%), Positives = 39/51 (76%)
Query: 7 SSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSV 57
GTVKWF+A+KGFGFIAPEDG D+FVH T I+ GFRTL E Q VEF V
Sbjct: 2 PQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGSGFRTLEENQKVEFEV 52
>sp|P63848|CSPA_MYCTU Probable cold shock protein A OS=Mycobacterium tuberculosis
GN=cspA PE=3 SV=1
Length = 67
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 34/51 (66%), Positives = 39/51 (76%)
Query: 7 SSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSV 57
GTVKWF+A+KGFGFIAPEDG D+FVH T I+ GFRTL E Q VEF +
Sbjct: 2 PQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEI 52
>sp|P63849|CSPA_MYCBO Probable cold shock protein A OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=cspA PE=3 SV=1
Length = 67
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 34/51 (66%), Positives = 39/51 (76%)
Query: 7 SSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSV 57
GTVKWF+A+KGFGFIAPEDG D+FVH T I+ GFRTL E Q VEF +
Sbjct: 2 PQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEFEI 52
>sp|P63238|CSPE_BUCAP Cold shock-like protein CspE OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=cspE PE=3 SV=2
Length = 69
Score = 76.6 bits (187), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 47/64 (73%)
Query: 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDG 63
+ + G VKWF+ KGFGFI PEDG +D+FVH ++I+S GF+TL+EGQ+VEF + G G
Sbjct: 1 MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQSNGFKTLAEGQSVEFEITEGAKG 60
Query: 64 RTKA 67
+ A
Sbjct: 61 PSAA 64
>sp|P63237|CSPE_BUCAI Cold shock-like protein CspE OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=cspE PE=3 SV=2
Length = 69
Score = 76.6 bits (187), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 47/64 (73%)
Query: 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDG 63
+ + G VKWF+ KGFGFI PEDG +D+FVH ++I+S GF+TL+EGQ+VEF + G G
Sbjct: 1 MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQSNGFKTLAEGQSVEFEITEGAKG 60
Query: 64 RTKA 67
+ A
Sbjct: 61 PSAA 64
>sp|P58726|CSPJ_SALTI Cold shock-like protein CspJ OS=Salmonella typhi GN=cspJ PE=3
SV=1
Length = 70
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/67 (53%), Positives = 50/67 (74%), Gaps = 1/67 (1%)
Query: 6 RSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGRT 65
+ +G VKWF+ +KGFGFI P+DG +D+FVH ++I+S FRTL+E Q VEFS + G G +
Sbjct: 4 KITGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNEFRTLNENQEVEFSAEQGPKGPS 63
Query: 66 KAVDVEA 72
AV+V A
Sbjct: 64 -AVNVVA 69
>sp|P0A975|CSPE_SHIFL Cold shock-like protein CspE OS=Shigella flexneri GN=cspE PE=3
SV=2
Length = 69
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 46/64 (71%)
Query: 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDG 63
+ + G VKWF+ KGFGFI PEDG +D+FVH ++I++ GF+TL+EGQ VEF + G G
Sbjct: 1 MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKG 60
Query: 64 RTKA 67
+ A
Sbjct: 61 PSAA 64
>sp|E0J1Q3|CSPE_ECOLW Cold shock-like protein CspE OS=Escherichia coli (strain ATCC
9637 / CCM 2024 / DSM 1116 / NCIMB 8666 / NRRL B-766 /
W) GN=cspE PE=1 SV=1
Length = 69
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 46/64 (71%)
Query: 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDG 63
+ + G VKWF+ KGFGFI PEDG +D+FVH ++I++ GF+TL+EGQ VEF + G G
Sbjct: 1 MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKG 60
Query: 64 RTKA 67
+ A
Sbjct: 61 PSAA 64
>sp|P0A972|CSPE_ECOLI Cold shock-like protein CspE OS=Escherichia coli (strain K12)
GN=cspE PE=1 SV=2
Length = 69
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 46/64 (71%)
Query: 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDG 63
+ + G VKWF+ KGFGFI PEDG +D+FVH ++I++ GF+TL+EGQ VEF + G G
Sbjct: 1 MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKG 60
Query: 64 RTKA 67
+ A
Sbjct: 61 PSAA 64
>sp|P0A973|CSPE_ECOL6 Cold shock-like protein CspE OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=cspE PE=3 SV=2
Length = 69
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 46/64 (71%)
Query: 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDG 63
+ + G VKWF+ KGFGFI PEDG +D+FVH ++I++ GF+TL+EGQ VEF + G G
Sbjct: 1 MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKG 60
Query: 64 RTKA 67
+ A
Sbjct: 61 PSAA 64
>sp|P0A974|CSPE_ECO57 Cold shock-like protein CspE OS=Escherichia coli O157:H7 GN=cspE
PE=3 SV=2
Length = 69
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 46/64 (71%)
Query: 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDG 63
+ + G VKWF+ KGFGFI PEDG +D+FVH ++I++ GF+TL+EGQ VEF + G G
Sbjct: 1 MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKG 60
Query: 64 RTKA 67
+ A
Sbjct: 61 PSAA 64
>sp|Q9KN00|CSPA_VIBCH Cold shock-like protein CspA OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=cspA PE=3
SV=1
Length = 70
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 49/63 (77%)
Query: 5 QRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGR 64
Q+ +G+VKWF+ KGFGFI+ ++GG+D+FVH SI SEGF+TL+EGQ V F+V+ G+ G
Sbjct: 3 QKMTGSVKWFNETKGFGFISQDNGGQDVFVHFKSIVSEGFKTLAEGQRVSFTVEQGKKGP 62
Query: 65 TKA 67
A
Sbjct: 63 QAA 65
>sp|Q9VRN5|LIN28_DROME Protein lin-28 homolog OS=Drosophila melanogaster GN=lin-28 PE=2
SV=2
Length = 195
Score = 73.6 bits (179), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 66/161 (40%), Gaps = 37/161 (22%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGRTKAV 68
G KWF+ KG+GF+ P DGG+++FVHQ+ I+ GFR+L E + VEF
Sbjct: 41 GKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIQMSGFRSLGEQEEVEFECQ---------- 90
Query: 69 DVEAASRSRRFGSRGGRSGGFYGGRGRGGGYGRGGRGGRSVGSGGGAGSGACFNCGR-TG 127
R+ R G R +GG +G Y C+NCG
Sbjct: 91 ------RTSR-GLEATRVSSRHGGSCQGSTYRP--------RINRRTRRMRCYNCGEFAN 135
Query: 128 HIARECYSRGRGGGRGYGGGRGGGGCYNCGEEGHFARDCPN 168
HIA EC G C+ C E H DCP+
Sbjct: 136 HIASEC-----------ALGPQPKRCHRCRGEDHLHADCPH 165
>sp|P0A362|CSPB_YERPE Cold shock-like protein CspB OS=Yersinia pestis GN=cspB PE=3 SV=1
Length = 70
Score = 73.6 bits (179), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 50/67 (74%), Gaps = 1/67 (1%)
Query: 6 RSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGRT 65
+ +G VKWF A KGFGFI+P DG +D+FVH ++I+ ++TL EGQ VEFS++ G+ G +
Sbjct: 4 KMTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQGNDYKTLDEGQNVEFSIEQGQKGPS 63
Query: 66 KAVDVEA 72
AV+V A
Sbjct: 64 -AVNVVA 69
>sp|P0A363|CSPB_YEREN Cold shock-like protein CspB OS=Yersinia enterocolitica GN=cspB
PE=3 SV=1
Length = 70
Score = 73.6 bits (179), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 50/67 (74%), Gaps = 1/67 (1%)
Query: 6 RSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGRT 65
+ +G VKWF A KGFGFI+P DG +D+FVH ++I+ ++TL EGQ VEFS++ G+ G +
Sbjct: 4 KMTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQGNDYKTLDEGQNVEFSIEQGQKGPS 63
Query: 66 KAVDVEA 72
AV+V A
Sbjct: 64 -AVNVVA 69
>sp|P36995|CSPB_ECOLI Cold shock-like protein CspB OS=Escherichia coli (strain K12)
GN=cspB PE=2 SV=1
Length = 71
Score = 73.2 bits (178), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 46/63 (73%)
Query: 5 QRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGR 64
+ +G VKWF+A KGFGFI+P DG +D+FVH ++I+++ +RTL EGQ V FS++ G G
Sbjct: 3 NKMTGLVKWFNADKGFGFISPVDGSKDVFVHFSAIQNDNYRTLFEGQKVTFSIESGAKGP 62
Query: 65 TKA 67
A
Sbjct: 63 AAA 65
>sp|P57407|CSPC_BUCAI Cold shock-like protein CspC OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=cspC PE=3 SV=2
Length = 69
Score = 72.8 bits (177), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 50/70 (71%), Gaps = 4/70 (5%)
Query: 1 MAEVQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVG 60
MA+++ G VKWF+ KGFGFI P DG +D+FVH +SI+ GF+TL+EGQ VEF + G
Sbjct: 1 MAKIK---GQVKWFNESKGFGFITPSDGSKDVFVHFSSIQGNGFKTLTEGQNVEFEIQDG 57
Query: 61 EDGRTKAVDV 70
+ G AV+V
Sbjct: 58 QKGPA-AVNV 66
>sp|P0A986|CSPI_ECOLI Cold shock-like protein CspI OS=Escherichia coli (strain K12)
GN=cspI PE=3 SV=1
Length = 70
Score = 72.8 bits (177), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Query: 6 RSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGRT 65
+ +G VKWF+ +KGFGFI P+DG +D+FVH ++I+S F+TL+E Q VEF ++ G G
Sbjct: 4 KMTGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNDFKTLTENQEVEFGIENGPKGPA 63
Query: 66 KAVDVEAA 73
AV V A
Sbjct: 64 -AVHVVAL 70
>sp|P0A987|CSPI_ECOL6 Cold shock-like protein CspI OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=cspI PE=3 SV=1
Length = 70
Score = 72.8 bits (177), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Query: 6 RSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGRT 65
+ +G VKWF+ +KGFGFI P+DG +D+FVH ++I+S F+TL+E Q VEF ++ G G
Sbjct: 4 KMTGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNDFKTLTENQEVEFGIENGPKGPA 63
Query: 66 KAVDVEAA 73
AV V A
Sbjct: 64 -AVHVVAL 70
>sp|P0A971|CSPD_SHIFL Cold shock-like protein CspD OS=Shigella flexneri GN=cspD PE=3
SV=1
Length = 74
Score = 72.8 bits (177), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 47/69 (68%), Gaps = 4/69 (5%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGR---- 64
GTVKWF+ KGFGFI PE GGED+F H ++I+ +G+RTL GQ+V+F V G G
Sbjct: 4 GTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPKGNHASV 63
Query: 65 TKAVDVEAA 73
V+VEAA
Sbjct: 64 IVPVEVEAA 72
>sp|P0A968|CSPD_ECOLI Cold shock-like protein CspD OS=Escherichia coli (strain K12)
GN=cspD PE=1 SV=1
Length = 74
Score = 72.8 bits (177), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 47/69 (68%), Gaps = 4/69 (5%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGR---- 64
GTVKWF+ KGFGFI PE GGED+F H ++I+ +G+RTL GQ+V+F V G G
Sbjct: 4 GTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPKGNHASV 63
Query: 65 TKAVDVEAA 73
V+VEAA
Sbjct: 64 IVPVEVEAA 72
>sp|P0A969|CSPD_ECOL6 Cold shock-like protein CspD OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=cspD PE=3 SV=1
Length = 74
Score = 72.8 bits (177), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 47/69 (68%), Gaps = 4/69 (5%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGR---- 64
GTVKWF+ KGFGFI PE GGED+F H ++I+ +G+RTL GQ+V+F V G G
Sbjct: 4 GTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPKGNHASV 63
Query: 65 TKAVDVEAA 73
V+VEAA
Sbjct: 64 IVPVEVEAA 72
>sp|P0A970|CSPD_ECO57 Cold shock-like protein CspD OS=Escherichia coli O157:H7 GN=cspD
PE=3 SV=1
Length = 74
Score = 72.8 bits (177), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 47/69 (68%), Gaps = 4/69 (5%)
Query: 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGR---- 64
GTVKWF+ KGFGFI PE GGED+F H ++I+ +G+RTL GQ+V+F V G G
Sbjct: 4 GTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPKGNHASV 63
Query: 65 TKAVDVEAA 73
V+VEAA
Sbjct: 64 IVPVEVEAA 72
>sp|P0A9Y4|CSPA_SHIFL Cold shock protein CspA OS=Shigella flexneri GN=cspA PE=3 SV=2
Length = 70
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 46/58 (79%)
Query: 6 RSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDG 63
+ +G VKWF+A KGFGFI P+DG +D+FVH ++I+++G+++L EGQ V F+++ G G
Sbjct: 4 KMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKG 61
>sp|P0A9Y2|CSPA_SALTY Cold shock protein CspA OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=cspA PE=3 SV=2
Length = 70
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 46/58 (79%)
Query: 6 RSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDG 63
+ +G VKWF+A KGFGFI P+DG +D+FVH ++I+++G+++L EGQ V F+++ G G
Sbjct: 4 KMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKG 61
>sp|P0A9Y3|CSPA_SALTI Cold shock protein CspA OS=Salmonella typhi GN=cspA PE=3 SV=2
Length = 70
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 46/58 (79%)
Query: 6 RSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDG 63
+ +G VKWF+A KGFGFI P+DG +D+FVH ++I+++G+++L EGQ V F+++ G G
Sbjct: 4 KMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKG 61
>sp|P0A9Y5|CSPA_SALEN Cold shock protein CspA OS=Salmonella enteritidis GN=cspA PE=3
SV=2
Length = 70
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 46/58 (79%)
Query: 6 RSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDG 63
+ +G VKWF+A KGFGFI P+DG +D+FVH ++I+++G+++L EGQ V F+++ G G
Sbjct: 4 KMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKG 61
>sp|Q46664|CSPA_ENTAK Major cold shock protein OS=Enterobacter aerogenes (strain ATCC
13048 / DSM 30053 / JCM 1235 / KCTC 2190 / NBRC 13534 /
NCIMB 10102 / NCTC 10006) GN=cspA PE=3 SV=2
Length = 70
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 46/58 (79%)
Query: 6 RSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDG 63
+ +G VKWF+A KGFGFI P+DG +D+FVH ++I+++G+++L EGQ V F+++ G G
Sbjct: 4 KMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKG 61
>sp|P0A9X9|CSPA_ECOLI Cold shock protein CspA OS=Escherichia coli (strain K12) GN=cspA
PE=1 SV=2
Length = 70
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 46/58 (79%)
Query: 6 RSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDG 63
+ +G VKWF+A KGFGFI P+DG +D+FVH ++I+++G+++L EGQ V F+++ G G
Sbjct: 4 KMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKG 61
>sp|P0A9Y0|CSPA_ECOL6 Cold shock protein CspA OS=Escherichia coli O6:H1 (strain CFT073
/ ATCC 700928 / UPEC) GN=cspA PE=3 SV=2
Length = 70
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 46/58 (79%)
Query: 6 RSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDG 63
+ +G VKWF+A KGFGFI P+DG +D+FVH ++I+++G+++L EGQ V F+++ G G
Sbjct: 4 KMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKG 61
>sp|P0A9Y1|CSPA_ECO57 Cold shock protein CspA OS=Escherichia coli O157:H7 GN=cspA PE=3
SV=2
Length = 70
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 46/58 (79%)
Query: 6 RSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDG 63
+ +G VKWF+A KGFGFI P+DG +D+FVH ++I+++G+++L EGQ V F+++ G G
Sbjct: 4 KMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKG 61
>sp|P0A9Y9|CSPC_SALTY Cold shock-like protein CspC OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=cspC PE=3 SV=2
Length = 69
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 51/72 (70%), Gaps = 4/72 (5%)
Query: 1 MAEVQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVG 60
MA+++ G VKWF+ KGFGFI P DG +D+FVH ++I+ GF+TL+EGQ VEF + G
Sbjct: 1 MAKIK---GQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDG 57
Query: 61 EDGRTKAVDVEA 72
+ G AV+V A
Sbjct: 58 QKGPA-AVNVTA 68
>sp|P0A9Z0|CSPC_SALTI Cold shock-like protein CspC OS=Salmonella typhi GN=cspC PE=3
SV=2
Length = 69
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 51/72 (70%), Gaps = 4/72 (5%)
Query: 1 MAEVQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVG 60
MA+++ G VKWF+ KGFGFI P DG +D+FVH ++I+ GF+TL+EGQ VEF + G
Sbjct: 1 MAKIK---GQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDG 57
Query: 61 EDGRTKAVDVEA 72
+ G AV+V A
Sbjct: 58 QKGPA-AVNVTA 68
>sp|E0J500|CSPC_ECOLW Cold shock-like protein CspC OS=Escherichia coli (strain ATCC
9637 / CCM 2024 / DSM 1116 / NCIMB 8666 / NRRL B-766 /
W) GN=cspC PE=1 SV=1
Length = 69
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 51/72 (70%), Gaps = 4/72 (5%)
Query: 1 MAEVQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVG 60
MA+++ G VKWF+ KGFGFI P DG +D+FVH ++I+ GF+TL+EGQ VEF + G
Sbjct: 1 MAKIK---GQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDG 57
Query: 61 EDGRTKAVDVEA 72
+ G AV+V A
Sbjct: 58 QKGPA-AVNVTA 68
>sp|P0A9Y6|CSPC_ECOLI Cold shock-like protein CspC OS=Escherichia coli (strain K12)
GN=cspC PE=1 SV=2
Length = 69
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 51/72 (70%), Gaps = 4/72 (5%)
Query: 1 MAEVQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVG 60
MA+++ G VKWF+ KGFGFI P DG +D+FVH ++I+ GF+TL+EGQ VEF + G
Sbjct: 1 MAKIK---GQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDG 57
Query: 61 EDGRTKAVDVEA 72
+ G AV+V A
Sbjct: 58 QKGPA-AVNVTA 68
>sp|P0A9Y7|CSPC_ECOL6 Cold shock-like protein CspC OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=cspC PE=3 SV=2
Length = 69
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 51/72 (70%), Gaps = 4/72 (5%)
Query: 1 MAEVQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVG 60
MA+++ G VKWF+ KGFGFI P DG +D+FVH ++I+ GF+TL+EGQ VEF + G
Sbjct: 1 MAKIK---GQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDG 57
Query: 61 EDGRTKAVDVEA 72
+ G AV+V A
Sbjct: 58 QKGPA-AVNVTA 68
>sp|P0A9Y8|CSPC_ECO57 Cold shock-like protein CspC OS=Escherichia coli O157:H7 GN=cspC
PE=3 SV=2
Length = 69
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 51/72 (70%), Gaps = 4/72 (5%)
Query: 1 MAEVQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVG 60
MA+++ G VKWF+ KGFGFI P DG +D+FVH ++I+ GF+TL+EGQ VEF + G
Sbjct: 1 MAKIK---GQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDG 57
Query: 61 EDGRTKAVDVEA 72
+ G AV+V A
Sbjct: 58 QKGPA-AVNVTA 68
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.142 0.452
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,248,260
Number of Sequences: 539616
Number of extensions: 4736294
Number of successful extensions: 101767
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1737
Number of HSP's successfully gapped in prelim test: 987
Number of HSP's that attempted gapping in prelim test: 28958
Number of HSP's gapped (non-prelim): 24274
length of query: 169
length of database: 191,569,459
effective HSP length: 109
effective length of query: 60
effective length of database: 132,751,315
effective search space: 7965078900
effective search space used: 7965078900
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)