Query 030905
Match_columns 169
No_of_seqs 312 out of 2087
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 09:45:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030905.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030905hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ts2_A Protein LIN-28 homolog 100.0 7.3E-42 2.5E-46 258.3 11.4 126 3-169 6-138 (148)
2 3ulj_A LIN28B, DNA-binding pro 99.9 2.3E-28 8E-33 169.7 7.1 78 4-82 6-90 (90)
3 3cam_A Cold-shock domain famil 99.9 9.9E-27 3.4E-31 153.5 8.6 67 6-73 1-67 (67)
4 3i2z_B RNA chaperone, negative 99.9 1.5E-26 5.3E-31 154.2 9.0 69 4-73 3-71 (71)
5 1h95_A CSD, Y-box binding prot 99.9 1.4E-26 4.8E-31 157.4 7.2 70 4-74 6-79 (79)
6 1c9o_A CSPB, cold-shock protei 99.9 3.8E-26 1.3E-30 150.3 8.0 66 6-73 1-66 (66)
7 3a0j_A Cold shock protein; OB- 99.9 6.8E-26 2.3E-30 151.8 9.1 68 6-75 1-70 (73)
8 1g6p_A Cold shock protein TMCS 99.9 9.8E-26 3.3E-30 148.3 7.4 66 7-74 1-66 (66)
9 2kcm_A Cold shock domain famil 99.9 1.1E-25 3.6E-30 151.1 7.4 67 7-75 1-68 (74)
10 2lss_A Cold shock-like protein 99.9 4E-27 1.4E-31 156.6 0.0 69 1-72 1-69 (70)
11 2k5n_A Putative cold-shock pro 99.9 3.8E-25 1.3E-29 148.5 9.0 67 5-75 1-67 (74)
12 1wfq_A UNR protein; beta-barre 99.9 3.4E-25 1.2E-29 153.6 9.0 69 4-75 16-85 (89)
13 2yty_A Cold shock domain-conta 99.9 3.6E-24 1.2E-28 148.2 5.9 69 4-75 16-84 (88)
14 3aqq_A Calcium-regulated heat 99.9 2.5E-22 8.5E-27 150.6 10.1 72 4-78 60-134 (147)
15 1x65_A UNR protein; cell-free 99.9 1.6E-23 5.6E-28 145.1 3.1 69 4-76 6-76 (89)
16 2ytx_A Cold shock domain-conta 99.9 1.9E-22 6.5E-27 141.9 7.8 73 4-80 16-88 (97)
17 2ytv_A Cold shock domain-conta 99.8 9.9E-22 3.4E-26 133.3 5.9 67 4-74 6-74 (79)
18 2bh8_A 1B11; transcription, mo 99.7 8.8E-18 3E-22 118.8 7.1 60 4-63 14-76 (101)
19 2a51_A Nucleocapsid protein; s 99.5 2.2E-14 7.7E-19 84.4 3.5 39 118-168 1-39 (39)
20 2bl6_A Nucleocapsid protein P1 99.4 3.6E-14 1.2E-18 82.5 3.1 37 118-168 1-37 (37)
21 2ec7_A GAG polyprotein (PR55GA 99.4 6.1E-14 2.1E-18 86.5 3.9 43 115-169 4-46 (49)
22 2ihx_A Nucleocapsid (NC) prote 99.4 1.2E-13 4.2E-18 88.9 4.3 47 116-169 3-49 (61)
23 2cqf_A RNA-binding protein LIN 99.4 1.2E-13 4.2E-18 89.4 4.3 43 115-168 5-47 (63)
24 1a1t_A Nucleocapsid protein; s 99.4 1.5E-13 5.3E-18 86.5 3.1 43 115-169 10-52 (55)
25 1cl4_A Protein (GAG polyprotei 99.4 1.1E-13 3.6E-18 88.8 2.2 48 118-169 2-49 (60)
26 2li8_A Protein LIN-28 homolog 99.3 4.1E-13 1.4E-17 89.6 3.6 44 115-169 22-65 (74)
27 2lli_A Protein AIR2; RNA surve 99.0 2.8E-10 9.6E-15 82.6 5.6 53 117-169 64-124 (124)
28 3nyb_B Protein AIR2; polya RNA 99.0 1.2E-10 4.2E-15 79.2 2.0 54 116-169 4-65 (83)
29 2lli_A Protein AIR2; RNA surve 98.9 1.4E-09 4.9E-14 78.8 3.8 40 118-168 43-82 (124)
30 2li8_A Protein LIN-28 homolog 98.7 6.7E-09 2.3E-13 69.1 3.6 41 126-168 2-42 (74)
31 1dsq_A Nucleic acid binding pr 98.5 3.1E-08 1.1E-12 52.8 2.0 20 150-169 2-21 (26)
32 1a6b_B Momulv, zinc finger pro 98.4 9.5E-08 3.2E-12 56.1 2.6 20 150-169 10-29 (40)
33 1nc8_A Nucleocapsid protein; H 98.2 5.6E-07 1.9E-11 49.1 1.9 19 150-168 6-24 (29)
34 1u6p_A GAG polyprotein; MLV, A 98.2 4.2E-07 1.4E-11 57.1 1.5 19 150-168 23-41 (56)
35 2ysa_A Retinoblastoma-binding 98.1 8.3E-07 2.8E-11 55.6 1.6 17 151-167 8-24 (55)
36 1dsq_A Nucleic acid binding pr 98.1 1.4E-06 4.9E-11 46.2 1.7 21 117-137 2-22 (26)
37 1nc8_A Nucleocapsid protein; H 97.9 6.1E-06 2.1E-10 44.9 2.4 22 116-137 5-26 (29)
38 1a6b_B Momulv, zinc finger pro 97.8 1.1E-05 3.9E-10 47.1 2.9 25 114-138 7-31 (40)
39 2a51_A Nucleocapsid protein; s 97.7 1.4E-05 4.7E-10 46.3 1.8 17 152-168 2-18 (39)
40 2ec7_A GAG polyprotein (PR55GA 97.7 1.9E-05 6.6E-10 47.9 2.4 20 149-168 5-24 (49)
41 2ihx_A Nucleocapsid (NC) prote 97.6 2E-05 6.7E-10 50.1 1.7 19 150-168 4-22 (61)
42 2bl6_A Nucleocapsid protein P1 97.6 2.3E-05 7.9E-10 44.8 1.7 17 152-168 2-18 (37)
43 1a1t_A Nucleocapsid protein; s 97.6 1.4E-05 4.9E-10 49.6 0.8 20 149-168 11-30 (55)
44 2cqf_A RNA-binding protein LIN 97.6 3.8E-05 1.3E-09 49.1 2.7 20 149-168 6-25 (63)
45 1cl4_A Protein (GAG polyprotei 97.6 1.1E-05 3.8E-10 51.0 0.0 18 151-168 2-19 (60)
46 1u6p_A GAG polyprotein; MLV, A 97.6 4E-05 1.4E-09 48.0 2.6 24 115-138 21-44 (56)
47 1a62_A RHO; transcription term 97.3 0.00043 1.5E-08 50.4 5.9 68 7-79 51-125 (130)
48 2ysa_A Retinoblastoma-binding 97.2 0.00013 4.5E-09 45.4 2.2 21 116-136 6-26 (55)
49 3ts2_A Protein LIN-28 homolog 96.5 0.0021 7E-08 47.7 3.6 23 116-138 118-140 (148)
50 2cqo_A Nucleolar protein of 40 94.8 0.071 2.4E-06 37.7 6.1 54 4-60 23-81 (119)
51 2k52_A Uncharacterized protein 94.8 0.066 2.3E-06 34.9 5.6 53 4-60 6-59 (80)
52 2id0_A Exoribonuclease 2; RNAs 94.7 0.052 1.8E-06 48.9 6.3 61 5-74 20-80 (644)
53 3go5_A Multidomain protein wit 94.0 0.25 8.5E-06 40.1 8.4 63 4-68 70-133 (285)
54 3go5_A Multidomain protein wit 93.1 0.22 7.4E-06 40.5 6.7 55 4-68 7-61 (285)
55 2khi_A 30S ribosomal protein S 92.9 0.56 1.9E-05 32.6 7.8 54 4-60 31-89 (115)
56 2k4k_A GSP13, general stress p 92.8 0.25 8.7E-06 35.3 6.0 64 4-71 8-77 (130)
57 3l0o_A Transcription terminati 92.0 0.28 9.6E-06 42.1 6.1 68 7-79 58-132 (427)
58 2eqs_A ATP-dependent RNA helic 92.0 0.28 9.6E-06 33.5 5.1 57 4-63 13-77 (103)
59 1y14_B B16, RPB7, DNA-directed 91.6 0.29 1E-05 36.4 5.2 53 4-60 84-150 (171)
60 2b8k_G B16, DNA-directed RNA p 91.1 0.36 1.2E-05 37.6 5.4 53 4-60 84-150 (215)
61 1kl9_A Eukaryotic translation 90.1 0.68 2.3E-05 35.1 6.1 54 4-60 16-75 (182)
62 2qcp_X Cation efflux system pr 89.8 1.9 6.3E-05 28.2 7.4 61 6-71 9-77 (80)
63 2l55_A SILB,silver efflux prot 89.8 3 0.0001 27.4 8.5 61 7-73 6-74 (82)
64 2vb2_X Copper protein, cation 89.7 1.7 6E-05 28.9 7.2 61 6-71 17-85 (88)
65 2khj_A 30S ribosomal protein S 88.8 0.56 1.9E-05 32.2 4.4 53 4-60 32-89 (109)
66 3ice_A Transcription terminati 87.4 0.65 2.2E-05 39.8 4.7 65 7-76 54-125 (422)
67 3aev_A Translation initiation 87.1 1.6 5.5E-05 35.1 6.8 54 4-60 12-71 (275)
68 2bx2_L Ribonuclease E, RNAse E 84.5 3 0.0001 36.6 7.7 69 5-74 47-131 (517)
69 2c35_B Human RPB7, DNA-directe 83.9 1.2 4.3E-05 32.9 4.3 52 4-59 82-149 (172)
70 4ayb_E DNA-directed RNA polyme 82.9 3.3 0.00011 30.7 6.4 53 4-60 82-149 (180)
71 1go3_E DNA-directed RNA polyme 82.5 3 0.0001 31.1 6.1 53 4-60 82-149 (187)
72 3h0g_G DNA-directed RNA polyme 81.9 0.95 3.3E-05 33.7 3.0 53 4-60 85-151 (172)
73 1q8k_A Eukaryotic translation 81.7 3.2 0.00011 34.0 6.3 54 4-60 14-73 (308)
74 2a19_A EIF-2- alpha, eukaryoti 80.5 2.8 9.5E-05 31.4 5.2 54 4-60 16-75 (175)
75 2hqh_E Restin; beta/BETA struc 77.6 0.55 1.9E-05 24.3 0.3 15 153-167 6-20 (26)
76 2kct_A Cytochrome C-type bioge 77.1 9.4 0.00032 25.7 6.5 63 7-72 18-83 (94)
77 1wi5_A RRP5 protein homolog; S 75.0 16 0.00054 25.0 7.5 54 4-61 22-82 (119)
78 3cw2_C Translation initiation 74.9 2.1 7.3E-05 34.2 3.2 55 4-61 12-72 (266)
79 1j6q_A Cytochrome C maturation 74.8 14 0.00048 26.6 7.3 64 7-73 42-105 (136)
80 2vnu_D Exosome complex exonucl 70.9 4.9 0.00017 36.8 5.0 49 5-60 31-82 (760)
81 1luz_A Protein K3, protein K2; 70.1 3 0.0001 27.5 2.6 52 4-60 12-70 (88)
82 4hti_A Receptor-type tyrosine- 63.6 2.8 9.5E-05 28.8 1.4 46 15-71 6-71 (99)
83 2id0_A Exoribonuclease 2; RNAs 62.6 14 0.00049 33.0 6.3 52 6-60 563-631 (644)
84 2pk2_A Cyclin-T1, protein TAT; 61.9 1.6 5.6E-05 36.2 0.0 6 119-124 316-321 (358)
85 2wp8_J Exosome complex exonucl 61.5 11 0.00037 35.6 5.4 49 4-59 247-298 (977)
86 2pzo_E CAP-Gly domain-containi 59.7 2.4 8.2E-05 24.4 0.4 15 153-167 23-37 (42)
87 2je6_I RRP4, exosome complex R 58.1 25 0.00085 27.6 6.3 55 4-61 75-136 (251)
88 1hh2_P NUSA, N utilization sub 56.0 28 0.00095 28.8 6.5 51 4-60 135-185 (344)
89 3alr_A Nanos protein; zinc-fin 55.3 5.3 0.00018 27.5 1.6 42 116-169 35-93 (106)
90 3psi_A Transcription elongatio 52.9 19 0.00066 34.8 5.6 54 4-60 903-961 (1219)
91 1sr3_A APO-CCME; OB fold, beta 49.8 23 0.00077 25.5 4.4 62 7-72 38-99 (136)
92 3bzc_A TEX; helix-turn-helix, 49.2 14 0.00048 34.0 3.9 54 4-60 655-712 (785)
93 3m7n_A Putative uncharacterize 49.2 30 0.001 25.6 5.2 53 5-59 59-124 (179)
94 3pgw_S U1-70K; protein-RNA com 48.4 32 0.0011 29.0 5.9 10 18-27 144-153 (437)
95 2ba0_A Archeal exosome RNA bin 48.3 69 0.0023 24.6 7.3 55 4-61 58-117 (229)
96 1ah9_A IF1, initiation factor 46.7 50 0.0017 20.5 5.6 54 4-59 5-58 (71)
97 2z0s_A Probable exosome comple 46.6 54 0.0018 25.2 6.5 56 4-62 67-130 (235)
98 3i4o_A Translation initiation 46.3 57 0.002 21.0 6.1 55 4-60 13-67 (79)
99 3cp3_A Uncharacterized protein 44.2 76 0.0026 21.9 7.0 30 29-60 55-84 (148)
100 3cdi_A Polynucleotide phosphor 41.5 5.5 0.00019 36.3 0.0 57 4-64 628-690 (723)
101 1e3p_A Guanosine pentaphosphat 39.6 4.9 0.00017 36.9 -0.7 57 4-64 668-734 (757)
102 2e5p_A Protein PHF1, PHD finge 38.5 73 0.0025 20.0 5.3 39 4-43 23-61 (68)
103 4aid_A Polyribonucleotide nucl 37.5 7 0.00024 35.7 0.0 58 4-64 638-700 (726)
104 2ckz_B C25, DNA-directed RNA p 36.8 84 0.0029 24.0 6.1 53 4-59 82-152 (218)
105 3d2w_A TAR DNA-binding protein 36.2 27 0.00091 22.2 2.8 21 8-28 35-58 (89)
106 3e2u_E CAP-Gly domain-containi 35.6 9.2 0.00031 22.0 0.3 17 152-168 22-38 (42)
107 2ylb_A Protein HFQ; RNA-bindin 34.8 37 0.0013 21.7 3.2 33 4-41 31-63 (74)
108 1ef4_A Subunit N, DNA-directed 34.6 13 0.00046 22.6 0.9 10 150-159 3-12 (55)
109 2wg5_A General control protein 33.4 97 0.0033 20.9 5.4 48 4-55 36-83 (109)
110 2wbr_A GW182, gawky, LD47780P; 33.4 30 0.001 22.9 2.6 23 6-28 29-53 (89)
111 2ja9_A Exosome complex exonucl 32.1 1.5E+02 0.005 21.8 6.6 54 5-61 9-66 (175)
112 4ayb_N DNA-directed RNA polyme 31.9 15 0.0005 23.2 0.8 10 150-159 4-13 (66)
113 2y90_A Protein HFQ; RNA-bindin 31.7 42 0.0014 23.0 3.2 33 4-41 31-63 (104)
114 3ayh_B DNA-directed RNA polyme 30.7 1.5E+02 0.0051 22.1 6.6 52 4-59 82-156 (203)
115 3our_B EIIA, phosphotransferas 29.5 1.1E+02 0.0039 22.9 5.6 45 7-53 78-128 (183)
116 2cpd_A Apobec-1 stimulating pr 29.0 30 0.001 22.1 2.1 20 9-28 42-61 (99)
117 2gu1_A Zinc peptidase; alpha/b 28.9 41 0.0014 27.6 3.3 34 6-39 248-284 (361)
118 4he6_A Peptidase family U32; u 28.9 1.1E+02 0.0039 19.4 5.0 21 6-26 7-27 (89)
119 1kq1_A HFQ, HOST factor for Q 28.9 41 0.0014 21.7 2.7 34 4-41 29-62 (77)
120 2m0o_A PHD finger protein 1; t 28.8 1.2E+02 0.0041 19.6 5.1 38 4-42 40-77 (79)
121 2xnq_A Nuclear polyadenylated 28.7 31 0.0011 22.1 2.2 22 7-28 46-67 (97)
122 3nyy_A Putative glycyl-glycine 27.5 68 0.0023 25.1 4.3 34 6-39 145-181 (252)
123 3isy_A Bsupi, intracellular pr 27.3 1.4E+02 0.005 20.6 5.5 49 8-60 32-87 (120)
124 2yuc_A TNF receptor-associated 27.1 60 0.0021 19.8 3.3 39 116-168 15-68 (76)
125 3fkh_A Putative pyridoxamine 5 27.0 62 0.0021 22.7 3.6 51 6-60 21-74 (138)
126 3h43_A Proteasome-activating n 26.8 67 0.0023 20.8 3.5 47 4-54 17-63 (85)
127 1hr0_W Translation initiation 24.8 27 0.00093 21.8 1.2 54 4-59 6-59 (71)
128 2gpr_A Glucose-permease IIA co 24.6 1.5E+02 0.0051 21.4 5.4 28 7-36 51-79 (154)
129 1fr3_A MOP, molybdate/tungstat 24.0 91 0.0031 18.1 3.6 53 5-58 7-59 (67)
130 1qwy_A Peptidoglycan hydrolase 24.0 60 0.0021 26.2 3.4 42 6-53 201-247 (291)
131 2i04_A Membrane-associated gua 24.0 91 0.0031 19.0 3.7 44 12-55 5-52 (85)
132 1gut_A Mopii, molybdate bindin 23.8 1.1E+02 0.0036 18.0 3.9 53 5-58 7-60 (68)
133 3psf_A Transcription elongatio 23.7 17 0.00057 34.6 0.0 54 4-60 906-964 (1030)
134 3slu_A M23 peptidase domain pr 23.2 64 0.0022 26.8 3.5 50 6-56 262-314 (371)
135 3hfo_A SSR3341 protein; HFQ, S 23.1 99 0.0034 19.5 3.6 34 4-40 31-64 (70)
136 2nn6_I 3'-5' exoribonuclease C 22.8 2.2E+02 0.0077 21.3 6.3 56 4-61 82-150 (209)
137 1f3z_A EIIA-GLC, glucose-speci 22.7 1.8E+02 0.006 21.2 5.5 28 7-36 56-84 (161)
138 3sb2_A Protein HFQ; SM-like, R 22.6 33 0.0011 22.3 1.2 33 4-41 30-62 (79)
139 3tuf_B Stage II sporulation pr 22.2 71 0.0024 24.9 3.4 35 6-40 99-136 (245)
140 1ax3_A Iiaglc, glucose permeas 22.1 1.4E+02 0.0049 21.7 4.9 45 7-53 56-106 (162)
141 3mxn_B RECQ-mediated genome in 22.1 1.9E+02 0.0066 20.9 5.4 66 6-77 62-132 (150)
142 2dnq_A RNA-binding protein 4B; 21.9 40 0.0014 21.0 1.6 21 8-28 32-52 (90)
143 1u1s_A HFQ protein; SM-like ba 21.0 97 0.0033 20.2 3.3 33 4-41 29-61 (82)
144 1ueq_A Membrane associated gua 21.0 1E+02 0.0035 20.6 3.7 45 11-55 23-71 (123)
145 2eqj_A Metal-response element- 20.8 1.4E+02 0.0048 18.6 3.9 37 4-41 27-63 (66)
146 2oqk_A Putative translation in 20.8 1.9E+02 0.0064 19.8 5.0 51 6-59 33-83 (117)
147 2dgu_A Heterogeneous nuclear r 20.6 50 0.0017 21.2 1.9 22 7-28 34-55 (103)
148 2krb_A Eukaryotic translation 20.2 78 0.0027 19.1 2.7 10 18-27 47-56 (81)
149 2e5q_A PHD finger protein 19; 20.2 1.2E+02 0.0042 18.7 3.5 38 4-42 21-58 (63)
No 1
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=100.00 E-value=7.3e-42 Score=258.28 Aligned_cols=126 Identities=33% Similarity=0.679 Sum_probs=112.2
Q ss_pred cccccceEEEEeeCCCCeeEEecC-------CCCccEEEEeeccccCCcccCCCCCEEEEEEeeCCCCceeEEEEEcCCC
Q 030905 3 EVQRSSGTVKWFSAQKGFGFIAPE-------DGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGRTKAVDVEAASR 75 (169)
Q Consensus 3 ~~~~~~G~Vk~~~~~kGfGFI~~~-------~~~~dvF~H~s~i~~~~~~~l~~G~~V~F~~~~~~kGr~~A~~V~~~~g 75 (169)
+.++++|+|||||.+||||||+++ ++++|||||+|+|...+|++|.+|++|+|+++++++| ++|++|+.+++
T Consensus 6 ~l~~~~G~Vkwfn~~kGfGFI~~~~~~g~p~~~g~DvFvH~s~i~~~g~~~l~eG~~V~f~~~~g~kG-~~A~~V~~pgg 84 (148)
T 3ts2_A 6 QLLHGAGICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSAKG-LESIRVTGPGG 84 (148)
T ss_dssp CCEEEEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEEEGGGBCSSSSCCCCTTCEEEEEEEEETTE-EEEEEEESGGG
T ss_pred ccccceeEEEEEECCCCeeEEeeCccccccCCCCccEEEEhHHhcccCCccCCCCCEEEEEEEEcccc-chhhcccccCC
Confidence 467899999999999999999987 3678999999999999999999999999999999999 89999999999
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCcCCeecccCCCCCCCCCCCCCCCCCCccccc
Q 030905 76 SRRFGSRGGRSGGFYGGRGRGGGYGRGGRGGRSVGSGGGAGSGACFNCGRTGHIARECYSRGRGGGRGYGGGRGGGGCYN 155 (169)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~gg~~~~~~~C~~Cg~~GH~a~~C~~~~~~~~~~~~g~~~~~~C~~ 155 (169)
.+++++.+.+ .....||+|++.||+|++||.+.. ...||+
T Consensus 85 ~pv~GS~rrp-----------------------------~~~~~C~~Cg~~GH~a~~C~~~~~-----------~~~C~~ 124 (148)
T 3ts2_A 85 VFCIGSERRP-----------------------------KGGDRCYNCGGLDHHAKECKLPPQ-----------PKKCHF 124 (148)
T ss_dssp CCCCCCTTSC-----------------------------CCSCCCTTTCCSSCCGGGCCSCCC-----------CCCCTT
T ss_pred cccccccccc-----------------------------CCCCcccEeCCccchhhhCCCCCC-----------CCcccc
Confidence 9998776422 124589999999999999998542 578999
Q ss_pred cCCCCccCCCCCCC
Q 030905 156 CGEEGHFARDCPNY 169 (169)
Q Consensus 156 Cg~~GH~ardCp~~ 169 (169)
|+++||+++|||++
T Consensus 125 Cg~~GH~~r~Cp~~ 138 (148)
T 3ts2_A 125 CQSINHMVASCPLK 138 (148)
T ss_dssp TCCSSCCGGGCTTT
T ss_pred cCCcCCEeccCcCC
Confidence 99999999999974
No 2
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=99.95 E-value=2.3e-28 Score=169.69 Aligned_cols=78 Identities=40% Similarity=0.763 Sum_probs=72.2
Q ss_pred ccccceEEEEeeCCCCeeEEe-------cCCCCccEEEEeeccccCCcccCCCCCEEEEEEeeCCCCceeEEEEEcCCCc
Q 030905 4 VQRSSGTVKWFSAQKGFGFIA-------PEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGRTKAVDVEAASRS 76 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~-------~~~~~~dvF~H~s~i~~~~~~~l~~G~~V~F~~~~~~kGr~~A~~V~~~~g~ 76 (169)
.+|.+|+|||||..||||||+ ++++++|||||+|+|+..+|++|.+||+|+|+++++++| ++|+||+.+++.
T Consensus 6 ~~r~tG~VKWFn~~KGfGFI~~~~~~~~p~dgg~DvFVH~s~i~~~g~~~L~eG~~V~f~v~~g~kG-~~A~~Vtg~~G~ 84 (90)
T 3ulj_A 6 VLRGSGHCKWFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLYMEGFRSLKEGEPVEFTFKKSSKG-FESLRVTGPGGN 84 (90)
T ss_dssp CEEEEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEEEGGGBCCSSSCCCCTTCEEEEEEEEETTE-EEEEEEECGGGC
T ss_pred ccccceEEEEeeCCCCeEEeEecCcCcCCCCCCccEEEEeehhcccCCCccCCCCEEEEEEEECCCC-cEEEEEECCCCc
Confidence 578899999999999999998 456678999999999999999999999999999999999 799999999999
Q ss_pred cccCCC
Q 030905 77 RRFGSR 82 (169)
Q Consensus 77 ~~~~~~ 82 (169)
|++++.
T Consensus 85 p~~gse 90 (90)
T 3ulj_A 85 PCLGNE 90 (90)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 998763
No 3
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=99.94 E-value=9.9e-27 Score=153.46 Aligned_cols=67 Identities=54% Similarity=1.033 Sum_probs=63.0
Q ss_pred ccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccCCcccCCCCCEEEEEEeeCCCCceeEEEEEcC
Q 030905 6 RSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGRTKAVDVEAA 73 (169)
Q Consensus 6 ~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~~~~l~~G~~V~F~~~~~~kGr~~A~~V~~~ 73 (169)
|.+|+|||||.+||||||+++++++|||||+|+|+..+++.|.+||+|+|+++++++| ++|++|+++
T Consensus 1 m~~G~Vk~fn~~kGfGFI~~~~gg~dvFvH~s~i~~~g~~~l~~G~~V~f~~~~~~kG-~~A~~V~~~ 67 (67)
T 3cam_A 1 MATGIVKWFNDAKGFGFITPDEGGEDLFAHFSAINMEGFKTLKEGQRVSFDVTTGPKG-KQAANIQAA 67 (67)
T ss_dssp CEEEEEEEEETTTTEEEEEETTSCCCEEEEGGGBCGGGGSSCCTTCEEEEEEEEETTE-EEEEEEEEC
T ss_pred CCCEEEEEEECCCCeEEEecCCCCccEEEEHHHccccCCCCCCCCCEEEEEEEECCCC-ccceEEEeC
Confidence 4589999999999999999999889999999999999999999999999999999999 699999863
No 4
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=99.94 E-value=1.5e-26 Score=154.17 Aligned_cols=69 Identities=51% Similarity=0.982 Sum_probs=64.2
Q ss_pred ccccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccCCcccCCCCCEEEEEEeeCCCCceeEEEEEcC
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGRTKAVDVEAA 73 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~~~~l~~G~~V~F~~~~~~kGr~~A~~V~~~ 73 (169)
|++++|+|||||.+||||||+++++++|||||+|+|...+++.|.+||+|+|+++++++| ++|++|+++
T Consensus 3 m~~~~G~Vk~fn~~kGfGFI~~~~g~~dvFvH~s~i~~~g~~~l~~G~~V~f~~~~~~kG-~~A~~V~~~ 71 (71)
T 3i2z_B 3 MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKG-PSAANVTAL 71 (71)
T ss_dssp --CEEEEEEEEETTTTEEEEEETTCCCCEEEEGGGBCCSSCCCCCTTCEEEEEEEEETTE-EEEEEEEEC
T ss_pred cccccEEEEEEECCCCcEEEecCCCCccEEEEhHHcccccCcCCCCCCEEEEEEEECCCC-CEeEEEEeC
Confidence 468999999999999999999999989999999999999999999999999999999999 899999864
No 5
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=99.93 E-value=1.4e-26 Score=157.36 Aligned_cols=70 Identities=46% Similarity=0.827 Sum_probs=64.7
Q ss_pred ccccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccC----CcccCCCCCEEEEEEeeCCCCceeEEEEEcCC
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSE----GFRTLSEGQTVEFSVDVGEDGRTKAVDVEAAS 74 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~----~~~~l~~G~~V~F~~~~~~kGr~~A~~V~~~~ 74 (169)
+++.+|+|||||.+||||||+++++++|||||+|+|+.. ++++|.+||+|+|+++++++| ++|++|+.++
T Consensus 6 ~~~~~G~Vkwfn~~kGfGFI~~~~gg~DvFvH~s~i~~~~~~~g~~~l~~G~~V~f~~~~~~kG-~~A~~V~~p~ 79 (79)
T 1h95_A 6 ATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKG-AEAANVTGPG 79 (79)
T ss_dssp EEEEEEEEEEEETTTTEEEEEEGGGTEEEEEEGGGBCSCCCSCCSCSCCSSCEEEEEEEECSSS-EEEESBCCCC
T ss_pred ccccceEEEEEECCCCcEEEecCCCCccEEEEhHHccccccccccccCCCCCEEEEEEEECCCC-ceeEEEECcC
Confidence 467899999999999999999999889999999999976 689999999999999999999 6999998764
No 6
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=99.93 E-value=3.8e-26 Score=150.25 Aligned_cols=66 Identities=48% Similarity=0.883 Sum_probs=62.4
Q ss_pred ccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccCCcccCCCCCEEEEEEeeCCCCceeEEEEEcC
Q 030905 6 RSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGRTKAVDVEAA 73 (169)
Q Consensus 6 ~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~~~~l~~G~~V~F~~~~~~kGr~~A~~V~~~ 73 (169)
|.+|+|||||.+||||||+++++ +|||||+|+|+..++++|.+||+|+|+++++++| ++|++|+++
T Consensus 1 m~~G~Vk~fn~~kGfGFI~~~~g-~dvFvH~s~i~~~g~~~l~~G~~V~f~~~~~~kG-~~A~~V~~~ 66 (66)
T 1c9o_A 1 MQRGKVKWFNNEKGYGFIEVEGG-SDVFVHFTAIQGEGFKTLEEGQEVSFEIVQGNRG-PQAANVVKL 66 (66)
T ss_dssp CEEEEEEEEETTTTEEEEEETTE-EEEEEEGGGBCSSSCCCCCTTCEEEEEEEEETTE-EEEEEEEEC
T ss_pred CCceEEEEEECCCCeEEEecCCC-ccEEEEHHHccccCCCCCCCCCEEEEEEEECCCC-cEeEEEEeC
Confidence 46899999999999999999998 9999999999999999999999999999999999 899999864
No 7
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=99.93 E-value=6.8e-26 Score=151.82 Aligned_cols=68 Identities=49% Similarity=0.896 Sum_probs=63.6
Q ss_pred ccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccCCcccCCCCCEEEEEEeeCC--CCceeEEEEEcCCC
Q 030905 6 RSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGE--DGRTKAVDVEAASR 75 (169)
Q Consensus 6 ~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~~~~l~~G~~V~F~~~~~~--kGr~~A~~V~~~~g 75 (169)
|.+|+|||||.+||||||+++++ +|||||+|+|+..+++.|.+||+|+|++++++ +| ++|++|++++.
T Consensus 1 m~~G~Vk~fn~~kGfGFI~~~~g-~dvFvH~s~i~~~g~~~l~~G~~V~f~~~~~~~~kG-~~A~~V~~~~~ 70 (73)
T 3a0j_A 1 MQKGRVKWFNAEKGYGFIEREGD-TDVFVHYTAINAKGFRTLNEGDIVTFDVEPGRNGKG-PQAVNVTVVEP 70 (73)
T ss_dssp CEEEEEEEEETTTTEEEEECTTS-CCEEEEGGGBCSSSCSSCCTTCEEEEEEECCSCCSS-SEEEEEEEEEC
T ss_pred CCCEEEEEEECCCCEEEEecCCC-CcEEEEhhhccccCCCCCCCCCEEEEEEEECCCCCC-CEEEEEEeCCC
Confidence 45899999999999999999987 99999999999999999999999999999998 88 79999998753
No 8
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=99.92 E-value=9.8e-26 Score=148.27 Aligned_cols=66 Identities=47% Similarity=0.941 Sum_probs=62.2
Q ss_pred cceEEEEeeCCCCeeEEecCCCCccEEEEeeccccCCcccCCCCCEEEEEEeeCCCCceeEEEEEcCC
Q 030905 7 SSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGRTKAVDVEAAS 74 (169)
Q Consensus 7 ~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~~~~l~~G~~V~F~~~~~~kGr~~A~~V~~~~ 74 (169)
|+|+|||||.+||||||+++++ +|||||+|+|+..+++.|.+||+|+|+++++++| ++|++|++++
T Consensus 1 m~G~Vk~fn~~kGfGFI~~~~g-~dvFvH~s~i~~~g~~~l~~G~~V~f~~~~~~~G-~~A~~V~~~~ 66 (66)
T 1g6p_A 1 MRGKVKWFDSKKGYGFITKDEG-GDVFVHWSAIEMEGFKTLKEGQVVEFEIQEGKKG-PQAAHVKVVE 66 (66)
T ss_dssp CCEEEEEEETTTTEEEEEETTS-CBCBBCSSSSCCSSCCCCCSSSEEEEEEECSSSC-CEEEEEEEEC
T ss_pred CcEEEEEEECCCCEEEEecCCC-ceEEEEhHHccccCCCCCCCCCEEEEEEEECCCC-CEEEEEEECC
Confidence 5799999999999999999976 8999999999999999999999999999999999 8999998753
No 9
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=99.92 E-value=1.1e-25 Score=151.12 Aligned_cols=67 Identities=27% Similarity=0.421 Sum_probs=63.2
Q ss_pred cceEEEEeeCCCCeeEEecCCCCccEEEEeeccc-cCCcccCCCCCEEEEEEeeCCCCceeEEEEEcCCC
Q 030905 7 SSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIK-SEGFRTLSEGQTVEFSVDVGEDGRTKAVDVEAASR 75 (169)
Q Consensus 7 ~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~-~~~~~~l~~G~~V~F~~~~~~kGr~~A~~V~~~~g 75 (169)
++|+|||||.+||||||+++++ +|||||+|+|+ ..+|+.|.+||+|+|+++++++| ++|++|++++.
T Consensus 1 ~~G~Vkwfn~~KGfGFI~~~dG-~DvFvH~s~i~~~~g~~~l~~G~~V~F~~~~g~kG-~~A~~V~~~~~ 68 (74)
T 2kcm_A 1 MKGKVVSYLAAKKYGFIQGDDG-ESYFLHFSELLDKKDEGKLVKGSMVHFDPTPTPKG-LAAKAISLPLE 68 (74)
T ss_dssp CEEEEEEEETTTTEEEEEETTS-CEECCCGGGSSCSGGGTTCCTTSEEEEEEECTTTS-CEEEEEECCSC
T ss_pred CCEEEEEEECCCCEEEEecCCC-ceEEEEhhhcccCCCCCCCCCCCEEEEEEEECCCC-ceeEEEEEcCc
Confidence 5799999999999999999998 99999999999 88899999999999999999999 69999998763
No 10
>2lss_A Cold shock-like protein; CSD, CSP, oligonucleotide binding F fold, RNA binding protein, DNA binding protein; NMR {Rickettsia rickettsii}
Probab=99.87 E-value=4e-27 Score=156.63 Aligned_cols=69 Identities=38% Similarity=0.792 Sum_probs=65.0
Q ss_pred CCcccccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccCCcccCCCCCEEEEEEeeCCCCceeEEEEEc
Q 030905 1 MAEVQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGRTKAVDVEA 72 (169)
Q Consensus 1 M~~~~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~~~~l~~G~~V~F~~~~~~kGr~~A~~V~~ 72 (169)
|+ ++++|+|||||.+||||||+++++++|||||+|+|+..+++.|.+||+|+|+++++++| ++|++|++
T Consensus 1 m~--~~~~G~Vk~fn~~kGfGFI~~~~gg~dvFvH~s~i~~~g~~~l~~G~~V~f~~~~~~~g-~~A~~V~~ 69 (70)
T 2lss_A 1 MA--TNIVGKVKWYNSTKNFGFIEQDNGGKDVFVHKSAVDAAGLHSLEEGQDVIFDLEEKQGK-AYAVNLRI 69 (70)
Confidence 66 78999999999999999999999889999999999999999999999999999999998 79999974
No 11
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=99.92 E-value=3.8e-25 Score=148.45 Aligned_cols=67 Identities=24% Similarity=0.449 Sum_probs=62.3
Q ss_pred cccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccCCcccCCCCCEEEEEEeeCCCCceeEEEEEcCCC
Q 030905 5 QRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGRTKAVDVEAASR 75 (169)
Q Consensus 5 ~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~~~~l~~G~~V~F~~~~~~kGr~~A~~V~~~~g 75 (169)
||++|+|||||.+||||||+++++.+| |||+|+|+..+ .|.+||+|+|+++++++| ++|++|+++..
T Consensus 1 M~~~G~Vkwfn~~KGfGFI~~~dg~~d-FvH~s~i~~~g--~l~~G~~V~F~~~~g~kG-~~A~~V~~~~~ 67 (74)
T 2k5n_A 1 MAMNGTITTWFKDKGFGFIKDENGDNR-YFHVIKVANPD--LIKKDAAVTFEPTTNNKG-LSAYAVKVVPL 67 (74)
T ss_dssp CCEEEEEEEEETTTTEEEEEESSSCEE-EEEGGGBSSGG--GCCTTCEEEEEEEECSSS-EEEEEEEECCS
T ss_pred CCcceEEEEEECCCCeEEEecCCCCce-EEEHhHcccCC--CCCCCCEEEEEEEeCCCC-ceeEEEEeCCC
Confidence 568999999999999999999998777 99999999886 799999999999999999 89999998764
No 12
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=99.92 E-value=3.4e-25 Score=153.63 Aligned_cols=69 Identities=26% Similarity=0.458 Sum_probs=64.1
Q ss_pred ccccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccCCcccCCCCCEEEEEEeeCCC-CceeEEEEEcCCC
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGED-GRTKAVDVEAASR 75 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~~~~l~~G~~V~F~~~~~~k-Gr~~A~~V~~~~g 75 (169)
.++++|+||||| ||||||+++++++|||||+++|+.. ++.|.+||+|+|+++++++ ||++|++|++++.
T Consensus 16 ~~~~~G~Vkwf~--KGfGFI~~ddgg~DVFvH~s~i~~~-~~~L~~G~~V~F~v~~~~k~Gk~~A~~V~~~~~ 85 (89)
T 1wfq_A 16 ALRETGVIEKLL--TSYGFIQCSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDRRTGKPIAVKLVKISG 85 (89)
T ss_dssp CCEEEEEEEEEC--SSEEEEEETTTTEEEEEETTTCSSC-TTTCCTTCCEEEEEEECSSSCCEEEEEEEESSC
T ss_pred ccccceEEEEEe--CCeeEEecCCCCccEEEEhHHhhCc-cCCCCCCCEEEEEEEECCCCCCcEEEEEEECCc
Confidence 478899999996 9999999999889999999999987 7899999999999999998 8889999998854
No 13
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=99.90 E-value=3.6e-24 Score=148.17 Aligned_cols=69 Identities=26% Similarity=0.485 Sum_probs=64.1
Q ss_pred ccccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccCCcccCCCCCEEEEEEeeCCCCceeEEEEEcCCC
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGRTKAVDVEAASR 75 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~~~~l~~G~~V~F~~~~~~kGr~~A~~V~~~~g 75 (169)
.++++|+||||+ ||||||+++++++|||||+|+|+.. ++.|.+||+|+|+++++++|+++|++|++++.
T Consensus 16 ~~~~~G~Vk~f~--kGfGFI~~ddgg~DvFvH~S~i~~~-~~~L~~G~~V~F~~~~g~~Gk~~A~~V~~~~~ 84 (88)
T 2yty_A 16 SKRLLGYVATLK--DNFGFIETANHDKEIFFHYSEFSGD-VDSLELGDMVEYSLSKGKGNKVSAEKVNKTSG 84 (88)
T ss_dssp CCCEEEEEEEEC--SSEEEEECSSSSCEEEEETTTCCSC-TTTCCTTCEEEECCCCCSCSCCBCCSCEECCC
T ss_pred CCceeEEEEEEE--CCccEEecCCCCceEEEEEhhhccc-cCcCCCCCEEEEEEEECCCCCeEeEEEEECCC
Confidence 578899999998 8999999999889999999999987 78999999999999999999889999998753
No 14
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=99.87 E-value=2.5e-22 Score=150.63 Aligned_cols=72 Identities=31% Similarity=0.503 Sum_probs=63.6
Q ss_pred ccccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccCCcccCCCCCEEEEEEeeC---CCCceeEEEEEcCCCccc
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVG---EDGRTKAVDVEAASRSRR 78 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~~~~l~~G~~V~F~~~~~---~kGr~~A~~V~~~~g~~~ 78 (169)
.+|++|+|||||.+||||||+++++++|||||+++|+.. ..|.+||+|+|+++++ .+| ++|++|++++..+.
T Consensus 60 g~m~~GtVKwFn~~KGfGFI~~ddGg~DVFVH~Sai~~~--~~L~eGq~V~Fev~~~~~~~~g-~qA~nV~~~~~~p~ 134 (147)
T 3aqq_A 60 GPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE--YVPVEGDEVTYKMCSIPPKNEK-LQAVEVVITHLAPG 134 (147)
T ss_dssp SCCEEEEEEEEETTTTEEEEEESSSCSCEEEEGGGEESS--BCCCTTCEEEEEEEEC--CCSC-EEEEEEEEEECCSS
T ss_pred CCccceEEEEEeCCCCeEEeccCCCCccEEEEeeeecCC--CcCCCCCEEEEEEEeccCCCCC-ceEEEEEeCCCCCC
Confidence 478899999999999999999999889999999999865 4899999999999874 344 89999999876553
No 15
>1x65_A UNR protein; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold, greek-KEY topology protein; NMR {Homo sapiens}
Probab=99.87 E-value=1.6e-23 Score=145.07 Aligned_cols=69 Identities=28% Similarity=0.425 Sum_probs=62.4
Q ss_pred ccccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccCCcccCCCCCEEEEEEeeCCC--CceeEEEEEcCCCc
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGED--GRTKAVDVEAASRS 76 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~~~~l~~G~~V~F~~~~~~k--Gr~~A~~V~~~~g~ 76 (169)
.++++|+||||+ ||||||+++++++|||||+|+|.. + +.|.+||+|+|+++++++ |+++|++|+++...
T Consensus 6 ~~r~~G~Vk~f~--KGfGFI~~~~gg~DvFvH~s~i~~-~-~~L~~G~~V~F~v~~g~kg~G~~~A~~V~~~~~~ 76 (89)
T 1x65_A 6 SGREMGVIAAMR--DGFGFIKCVDRDVRMFFHFSEILD-G-NQLHIADEVEFTVVPDMLSAQRNHAIRIKKLPKG 76 (89)
T ss_dssp CCCEEEEEEECC--TTBCEEEESSSSSCCCCBTTGGGG-S-CCCCTTCCEEECCBCCSSSCCCCBCCSCEECCBT
T ss_pred CcceeEEEEEEe--CCcceeecCCCCccEEEEhhhccC-C-CCCCCCCEEEEEEEeCCCcCCCceeeEEEECCCC
Confidence 478999999996 999999999988999999999997 5 789999999999999986 56899999987653
No 16
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=99.87 E-value=1.9e-22 Score=141.91 Aligned_cols=73 Identities=27% Similarity=0.429 Sum_probs=64.7
Q ss_pred ccccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccCCcccCCCCCEEEEEEeeCCCCceeEEEEEcCCCccccC
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGRTKAVDVEAASRSRRFG 80 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~~~~l~~G~~V~F~~~~~~kGr~~A~~V~~~~g~~~~~ 80 (169)
.++.+|+|||| +||||||+++++++|||||+|+|... ++.|.+||+|+|++++.+++ ++|++|++++..++..
T Consensus 16 ~~~~~G~Vkwf--~KGfGFI~~ddg~~DvFvH~s~i~~~-~~~L~~G~~V~F~v~~~~~g-~~A~~V~~~~~~~~~~ 88 (97)
T 2ytx_A 16 QARCQGVVCAM--KEAFGFIERGDVVKEIFFHYSEFKGD-LETLQPGDDVEFTIKDRNGK-EVATDVRLLPQGTVIF 88 (97)
T ss_dssp CCCEEEEECCC--CSSEEEEECSSSCCCEEEETTTCCSC-TTSCCSCCEEEEEECCCSSS-CBEEEEEECCCSSCCC
T ss_pred CcceeEEEEEE--eCCceEEecCCCCceEEEEehHhccc-cCCCCCCCEEEEEEEcCCCC-cEEEEEEECCCCccce
Confidence 57889999999 89999999999889999999999987 78999999999999876665 8999999987655443
No 17
>2ytv_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=99.85 E-value=9.9e-22 Score=133.35 Aligned_cols=67 Identities=34% Similarity=0.530 Sum_probs=60.9
Q ss_pred ccccceEEEEeeCCCCeeEEecCCC-CccEEEEeeccccCCcccCCCCCEEEEEEeeCCC-CceeEEEEEcCC
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAPEDG-GEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGED-GRTKAVDVEAAS 74 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~~~~-~~dvF~H~s~i~~~~~~~l~~G~~V~F~~~~~~k-Gr~~A~~V~~~~ 74 (169)
.|+.+|+|+|| +||||||+++++ ++|||||+++|+ .+ ..|.+||+|+|+++++++ |+++|++|++++
T Consensus 6 ~~~~~G~V~~~--~KGfGFI~~ddg~g~DvFvH~s~i~-~g-~~l~~G~~V~F~v~~~~k~G~~~A~~V~~~~ 74 (79)
T 2ytv_A 6 SGLRRATVECV--KDQFGFINYEVGDSKKLFFHVKEVQ-DG-IELQAGDEVEFSVILNQRTGKCSACNVWRVS 74 (79)
T ss_dssp CSBCCEEEEEC--CSSEEEESCCCSSSSSEEEETTTCC-SS-CCCCTTCEEECBCEECSSSCCEECCSCEECS
T ss_pred CCcccEEEEEe--cccceeEeCCCCCCCcEEEEhHHcC-CC-CcCCCCCEEEEEEEECCCCCCceeEEEEECC
Confidence 58899999999 599999999987 689999999999 66 899999999999999988 855999999875
No 18
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=99.72 E-value=8.8e-18 Score=118.79 Aligned_cols=60 Identities=40% Similarity=0.686 Sum_probs=54.0
Q ss_pred ccccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccCCc--ccCCCCCEEEEEEeeCC-CC
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGF--RTLSEGQTVEFSVDVGE-DG 63 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~~--~~l~~G~~V~F~~~~~~-kG 63 (169)
.++++|+|||||.+||||||+++++++|||||+|+|...++ ..|.+|+.|+|++.... .|
T Consensus 14 ~~~~~G~Vk~fn~~kGfGFI~~~~gg~dvfvH~s~l~~~~~~~~~l~~Ge~V~g~V~~i~~fG 76 (101)
T 2bh8_A 14 SGKMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAGSSGAAVRGNPQQGDRVEGKIKSITDFG 76 (101)
T ss_dssp --CEEEEEEEEEGGGTEEEEEESSSSCEEEEECCCSCSSSCCCCCCCTTCEEEEEEEECCSEE
T ss_pred cccceeEEEEEECCCCCEEEEeCCCCcEEEEEEEEEecCCccccCCCCCCEEEEEEEEeCCcE
Confidence 46789999999999999999999988999999999999888 89999999999999865 45
No 19
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=99.47 E-value=2.2e-14 Score=84.38 Aligned_cols=39 Identities=46% Similarity=1.094 Sum_probs=35.1
Q ss_pred CCccccCcCCeecccCCCCCCCCCCCCCCCCCCccccccCCCCccCCCCCC
Q 030905 118 GACFNCGRTGHIARECYSRGRGGGRGYGGGRGGGGCYNCGEEGHFARDCPN 168 (169)
Q Consensus 118 ~~C~~Cg~~GH~a~~C~~~~~~~~~~~~g~~~~~~C~~Cg~~GH~ardCp~ 168 (169)
..||+|++.||++++||.+. ...||+|+++||+++|||+
T Consensus 1 i~C~~Cg~~GH~a~~C~~~~------------~~~C~~Cg~~GH~~~~C~~ 39 (39)
T 2a51_A 1 LTCFNCGKPGHTARMCRQPR------------QEGCWNCGSKEHRFAQCPK 39 (39)
T ss_dssp CBCTTTCCBSSCTTTCCSCC------------CSSCTTTCCSSSCTTTSCC
T ss_pred CeeeccCCCCcccccCCCCC------------CCccccCCCCCCccCcCcC
Confidence 36999999999999999853 4679999999999999996
No 20
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=99.45 E-value=3.6e-14 Score=82.54 Aligned_cols=37 Identities=35% Similarity=1.162 Sum_probs=33.7
Q ss_pred CCccccCcCCeecccCCCCCCCCCCCCCCCCCCccccccCCCCccCCCCCC
Q 030905 118 GACFNCGRTGHIARECYSRGRGGGRGYGGGRGGGGCYNCGEEGHFARDCPN 168 (169)
Q Consensus 118 ~~C~~Cg~~GH~a~~C~~~~~~~~~~~~g~~~~~~C~~Cg~~GH~ardCp~ 168 (169)
..||+|+++||++++||.+ ..||+|+++||+|+|||+
T Consensus 1 ~~C~~Cg~~GH~~~~C~~~--------------~~C~~Cg~~GH~a~~C~~ 37 (37)
T 2bl6_A 1 QTCYNCGKPGHLSSQCRAP--------------KVCFKCKQPGHFSKQCRS 37 (37)
T ss_dssp CCBSSSCCSSCCTTTSSCB--------------TTCSSCCCTTGGGGTTCC
T ss_pred CcccccCCCCcchhhCcCc--------------CeEccCCCcCCccCcCcC
Confidence 3699999999999999973 569999999999999996
No 21
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=99.44 E-value=6.1e-14 Score=86.51 Aligned_cols=43 Identities=40% Similarity=1.012 Sum_probs=37.6
Q ss_pred CCCCCccccCcCCeecccCCCCCCCCCCCCCCCCCCccccccCCCCccCCCCCCC
Q 030905 115 AGSGACFNCGRTGHIARECYSRGRGGGRGYGGGRGGGGCYNCGEEGHFARDCPNY 169 (169)
Q Consensus 115 ~~~~~C~~Cg~~GH~a~~C~~~~~~~~~~~~g~~~~~~C~~Cg~~GH~ardCp~~ 169 (169)
.....||+|++.||++++||.+. ...||+|+++||+++|||++
T Consensus 4 ~r~~~C~~Cg~~GH~a~~C~~~~------------~~~C~~Cg~~GH~~~~C~~~ 46 (49)
T 2ec7_A 4 RKVIRCWNCGKEGHSARQCRAPR------------RQGCWKCGKTGHVMAKCPER 46 (49)
T ss_dssp CCCCBCTTTCCBTCCTTTCCCSS------------CCSCSSSCCSSCCGGGCCSS
T ss_pred CCcCeeeecCCCCcChhhCcCCC------------CCeeCcCCCcCCccCCCcCC
Confidence 34568999999999999999853 46799999999999999974
No 22
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=99.42 E-value=1.2e-13 Score=88.86 Aligned_cols=47 Identities=30% Similarity=0.797 Sum_probs=38.5
Q ss_pred CCCCccccCcCCeecccCCCCCCCCCCCCCCCCCCccccccCCCCccCCCCCCC
Q 030905 116 GSGACFNCGRTGHIARECYSRGRGGGRGYGGGRGGGGCYNCGEEGHFARDCPNY 169 (169)
Q Consensus 116 ~~~~C~~Cg~~GH~a~~C~~~~~~~~~~~~g~~~~~~C~~Cg~~GH~ardCp~~ 169 (169)
....||+|+++||++++||...... .....||+|+++||+|+|||+.
T Consensus 3 ~~~~C~~Cg~~GH~a~~C~~~~~~~-------~~~~~C~~Cg~~GH~ar~C~~~ 49 (61)
T 2ihx_A 3 ARGLCYTCGSPGHYQAQCPKKRKSG-------NSRERCQLCNGMGHNAKQCRKR 49 (61)
T ss_dssp CTTBCSSSCCBTCCGGGCTTTTSSS-------CCCSBCTTTCCBSSCGGGCCCC
T ss_pred CCCcccccCCCCeehhhCcCCcCCC-------CCCCeeCCCCCCCCCcCCCcCC
Confidence 4568999999999999999865311 1247799999999999999974
No 23
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=1.2e-13 Score=89.45 Aligned_cols=43 Identities=30% Similarity=0.686 Sum_probs=37.3
Q ss_pred CCCCCccccCcCCeecccCCCCCCCCCCCCCCCCCCccccccCCCCccCCCCCC
Q 030905 115 AGSGACFNCGRTGHIARECYSRGRGGGRGYGGGRGGGGCYNCGEEGHFARDCPN 168 (169)
Q Consensus 115 ~~~~~C~~Cg~~GH~a~~C~~~~~~~~~~~~g~~~~~~C~~Cg~~GH~ardCp~ 168 (169)
.....||+|++.||++++||.+. ....||+|+++||+|+|||+
T Consensus 5 ~r~~~C~~Cg~~GH~a~~C~~~~-----------~~~~C~~Cg~~GH~ar~Cp~ 47 (63)
T 2cqf_A 5 SSGDRCYNCGGLDHHAKECKLPP-----------QPKKCHFCQSISHMVASCPL 47 (63)
T ss_dssp CSCCCCSSSCCSSSCTTTCCSCC-----------CSSCCTTTCCSSSCTTTCTG
T ss_pred CCCCcccccCCCCcChhhCCCCC-----------CCCccCCcCCcCCccCcCCC
Confidence 34568999999999999999753 15789999999999999996
No 24
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=99.39 E-value=1.5e-13 Score=86.54 Aligned_cols=43 Identities=44% Similarity=1.097 Sum_probs=37.5
Q ss_pred CCCCCccccCcCCeecccCCCCCCCCCCCCCCCCCCccccccCCCCccCCCCCCC
Q 030905 115 AGSGACFNCGRTGHIARECYSRGRGGGRGYGGGRGGGGCYNCGEEGHFARDCPNY 169 (169)
Q Consensus 115 ~~~~~C~~Cg~~GH~a~~C~~~~~~~~~~~~g~~~~~~C~~Cg~~GH~ardCp~~ 169 (169)
.....||+|++.||++++||.+. ...||+|+++||+++|||+.
T Consensus 10 ~~~~~C~~Cg~~GH~a~~C~~~~------------~~~C~~Cg~~GH~~~~C~~~ 52 (55)
T 1a1t_A 10 RKTVKCFNCGKEGHIAKNCRAPR------------KKGCWKCGKEGHQMKDCTER 52 (55)
T ss_dssp GGTCBCTTTCCBSSCGGGCSSCS------------CCBCTTTCCBSSCGGGCSSS
T ss_pred CCCcceeeeCCCCcChhhcCCCC------------CCEeCCCCCcCCccCCCcCc
Confidence 34568999999999999999853 46799999999999999973
No 25
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=99.38 E-value=1.1e-13 Score=88.80 Aligned_cols=48 Identities=31% Similarity=0.832 Sum_probs=18.5
Q ss_pred CCccccCcCCeecccCCCCCCCCCCCCCCCCCCccccccCCCCccCCCCCCC
Q 030905 118 GACFNCGRTGHIARECYSRGRGGGRGYGGGRGGGGCYNCGEEGHFARDCPNY 169 (169)
Q Consensus 118 ~~C~~Cg~~GH~a~~C~~~~~~~~~~~~g~~~~~~C~~Cg~~GH~ardCp~~ 169 (169)
..||+|+++||+|++||....... .......||+|+++||+|+|||+.
T Consensus 2 ~~Cf~Cg~~GH~a~~C~~~~~~~~----~~~~~~~C~~Cg~~GH~ar~C~~~ 49 (60)
T 1cl4_A 2 GSCFKCGKKGHFAKNCHEHAHNNA----EPKVPGLCPRCKRGKHWANECKSK 49 (60)
T ss_dssp -------------------------------CCCSCSSCSSCSSCSTTCCCT
T ss_pred CccccCCCCCcCHhhCcCCCCCcc----ccCCCcceeECCCCCCccCcCCCc
Confidence 369999999999999998643211 011357899999999999999974
No 26
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=99.35 E-value=4.1e-13 Score=89.63 Aligned_cols=44 Identities=30% Similarity=0.662 Sum_probs=37.7
Q ss_pred CCCCCccccCcCCeecccCCCCCCCCCCCCCCCCCCccccccCCCCccCCCCCCC
Q 030905 115 AGSGACFNCGRTGHIARECYSRGRGGGRGYGGGRGGGGCYNCGEEGHFARDCPNY 169 (169)
Q Consensus 115 ~~~~~C~~Cg~~GH~a~~C~~~~~~~~~~~~g~~~~~~C~~Cg~~GH~ardCp~~ 169 (169)
.....||+|++.||++++|+.... ...||+|+++||+|+|||+.
T Consensus 22 ~r~~~C~~Cg~~GH~a~~C~~~~~-----------~~~C~~Cg~~GH~ar~Cp~~ 65 (74)
T 2li8_A 22 SKGDRCYNCGGLDHHAKECKLPPQ-----------PKKCHFCQSISHMVASCPLK 65 (74)
T ss_dssp STTSCCTTTCCSSSCTTTCSSCCC-----------CCCCTTTCCTTSCGGGCTTG
T ss_pred CCCCcccccCCcCcCcccCCCCCC-----------CCccCCcCCcCCccCcCcCC
Confidence 355689999999999999997531 57899999999999999963
No 27
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=99.03 E-value=2.8e-10 Score=82.58 Aligned_cols=53 Identities=30% Similarity=0.423 Sum_probs=38.8
Q ss_pred CCCccccCcCCeecccCCCCCCCCC-----CC---CCCCCCCccccccCCCCccCCCCCCC
Q 030905 117 SGACFNCGRTGHIARECYSRGRGGG-----RG---YGGGRGGGGCYNCGEEGHFARDCPNY 169 (169)
Q Consensus 117 ~~~C~~Cg~~GH~a~~C~~~~~~~~-----~~---~~g~~~~~~C~~Cg~~GH~ardCp~~ 169 (169)
...||+|++.||++++||....... .. .........||+|++.||||+|||++
T Consensus 64 ~~~C~~Cg~~GH~~~~Cp~~~~~y~~~~~~~~~~~~~~~~~~~~Cy~Cg~~GH~a~dCp~~ 124 (124)
T 2lli_A 64 KVQCTLCKSKKHSKERCPSIWRAYILVDDNEKAKPKVLPFHTIYCYNCGGKGHFGDDCKEK 124 (124)
T ss_dssp CCSSSSSCSSCCCTTTCCCSTTSCCSSSCCCCCCCSCCCCCCCCTTTTSSSCTTTTTSCCC
T ss_pred CccCCCCCcCCcchhhCCCccccccccCccccccccccCCCCCCcCCCCCCCcCcccCcCC
Confidence 4689999999999999997643100 00 01122467899999999999999985
No 28
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=98.98 E-value=1.2e-10 Score=79.19 Aligned_cols=54 Identities=30% Similarity=0.487 Sum_probs=36.0
Q ss_pred CCCCccccCcCCeecccCCCCCCC----CCCCCC----CCCCCccccccCCCCccCCCCCCC
Q 030905 116 GSGACFNCGRTGHIARECYSRGRG----GGRGYG----GGRGGGGCYNCGEEGHFARDCPNY 169 (169)
Q Consensus 116 ~~~~C~~Cg~~GH~a~~C~~~~~~----~~~~~~----g~~~~~~C~~Cg~~GH~ardCp~~ 169 (169)
....||+|++.||++++||....- ..+... -....+.||+|++.|||++|||+.
T Consensus 4 k~~~C~~Cg~~GH~~~~Cp~~~rcY~c~~~gh~~~~c~~p~~~~~CYnCG~~GH~~rdC~~~ 65 (83)
T 3nyb_B 4 KKVQCTLCKSKKHSKERCPSIWRAYILVDDNEKAKPKVLPFHTIYCYNCGGKGHFGDDCKEK 65 (83)
T ss_dssp ---CCSSSCCSSSCGGGCGGGTCCCCBC-------------CCCBCSSSSCBSSCGGGCSSC
T ss_pred ccCCCCCCCCCCCccccCCCcccccccccCCcccccccCCCCCCeecccCCCCcCcccCCcc
Confidence 456899999999999999975320 000000 012357899999999999999973
No 29
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=98.85 E-value=1.4e-09 Score=78.84 Aligned_cols=40 Identities=25% Similarity=0.585 Sum_probs=31.2
Q ss_pred CCccccCcCCeecccCCCCCCCCCCCCCCCCCCccccccCCCCccCCCCCC
Q 030905 118 GACFNCGRTGHIARECYSRGRGGGRGYGGGRGGGGCYNCGEEGHFARDCPN 168 (169)
Q Consensus 118 ~~C~~Cg~~GH~a~~C~~~~~~~~~~~~g~~~~~~C~~Cg~~GH~ardCp~ 168 (169)
..||+|++.||++++||... ....||+|++.||+++|||+
T Consensus 43 ~~C~~Cg~~GH~~~~C~~~~-----------~~~~C~~Cg~~GH~~~~Cp~ 82 (124)
T 2lli_A 43 IQCSKCDEVGHYRSQCPHKW-----------KKVQCTLCKSKKHSKERCPS 82 (124)
T ss_dssp SCSSSSSCSSSSTTTSCCCC-----------CCCSSSSSCSSCCCTTTCCC
T ss_pred ccccccCCCCCccccCcCcc-----------cCccCCCCCcCCcchhhCCC
Confidence 46777777777777777643 14679999999999999996
No 30
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=98.73 E-value=6.7e-09 Score=69.08 Aligned_cols=41 Identities=27% Similarity=0.528 Sum_probs=22.1
Q ss_pred CCeecccCCCCCCCCCCCCCCCCCCccccccCCCCccCCCCCC
Q 030905 126 TGHIARECYSRGRGGGRGYGGGRGGGGCYNCGEEGHFARDCPN 168 (169)
Q Consensus 126 ~GH~a~~C~~~~~~~~~~~~g~~~~~~C~~Cg~~GH~ardCp~ 168 (169)
+||+++||+.+...... ....+...||+|+++||++++||+
T Consensus 2 ~gh~~rdc~~~~~~~~~--~~~~r~~~C~~Cg~~GH~a~~C~~ 42 (74)
T 2li8_A 2 SGLVPRGSHMPKGKSMQ--KRRSKGDRCYNCGGLDHHAKECKL 42 (74)
T ss_dssp ----------CCCCCCC--SCCSTTSCCTTTCCSSSCTTTCSS
T ss_pred CccccCcCCCCCcCccc--cccCCCCcccccCCcCcCcccCCC
Confidence 69999999987653211 123356789999999999999985
No 31
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=98.53 E-value=3.1e-08 Score=52.84 Aligned_cols=20 Identities=45% Similarity=1.167 Sum_probs=16.1
Q ss_pred CccccccCCCCccCCCCCCC
Q 030905 150 GGGCYNCGEEGHFARDCPNY 169 (169)
Q Consensus 150 ~~~C~~Cg~~GH~ardCp~~ 169 (169)
...||+|+++||||+|||+.
T Consensus 2 ~~~Cf~CG~~GH~ardC~~~ 21 (26)
T 1dsq_A 2 GPVCFSCGKTGHIKRDCKEE 21 (26)
T ss_dssp CCBCTTTCCBSSCTTTTTCC
T ss_pred CCeeEeCCCCCcccccCCCc
Confidence 35689999999999999863
No 32
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=98.44 E-value=9.5e-08 Score=56.07 Aligned_cols=20 Identities=45% Similarity=1.082 Sum_probs=16.2
Q ss_pred CccccccCCCCccCCCCCCC
Q 030905 150 GGGCYNCGEEGHFARDCPNY 169 (169)
Q Consensus 150 ~~~C~~Cg~~GH~ardCp~~ 169 (169)
...||+|++.||||+|||++
T Consensus 10 ~~~C~~Cgk~GH~ardCP~~ 29 (40)
T 1a6b_B 10 RDQCAYCKEKGHWAKDCPKK 29 (40)
T ss_dssp SSSCSSSCCTTCCTTSCSSS
T ss_pred CCeeeECCCCCcchhhCcCC
Confidence 56788888888888888864
No 33
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=98.19 E-value=5.6e-07 Score=49.06 Aligned_cols=19 Identities=53% Similarity=1.080 Sum_probs=14.4
Q ss_pred CccccccCCCCccCCCCCC
Q 030905 150 GGGCYNCGEEGHFARDCPN 168 (169)
Q Consensus 150 ~~~C~~Cg~~GH~ardCp~ 168 (169)
...||+|+++||+++|||.
T Consensus 6 ~~~C~nCgk~GH~ar~C~~ 24 (29)
T 1nc8_A 6 VIRCWNCGKEGHSARQCRA 24 (29)
T ss_dssp CCBCTTTSCBSSCGGGCCS
T ss_pred CCEEEECCccccCHhHCcc
Confidence 4568888888888888864
No 34
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=98.19 E-value=4.2e-07 Score=57.12 Aligned_cols=19 Identities=47% Similarity=1.176 Sum_probs=11.5
Q ss_pred CccccccCCCCccCCCCCC
Q 030905 150 GGGCYNCGEEGHFARDCPN 168 (169)
Q Consensus 150 ~~~C~~Cg~~GH~ardCp~ 168 (169)
...||+|++.||||+|||+
T Consensus 23 ~~~C~~Cge~GH~ardCp~ 41 (56)
T 1u6p_A 23 RDQCAYCKEKGHWAKDCPK 41 (56)
T ss_dssp TTBCSSSCCBSSCGGGCTT
T ss_pred CCcceeCCCCCcccccCcC
Confidence 3456666666666666654
No 35
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.11 E-value=8.3e-07 Score=55.56 Aligned_cols=17 Identities=41% Similarity=1.400 Sum_probs=10.4
Q ss_pred ccccccCCCCccCCCCC
Q 030905 151 GGCYNCGEEGHFARDCP 167 (169)
Q Consensus 151 ~~C~~Cg~~GH~ardCp 167 (169)
..||+|+++|||++|||
T Consensus 8 ~~C~kCGk~GH~~k~Cp 24 (55)
T 2ysa_A 8 YTCFRCGKPGHYIKNCP 24 (55)
T ss_dssp CCCTTTCCTTSCGGGCS
T ss_pred CccccCCCcCcccccCC
Confidence 44666666666666665
No 36
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=98.06 E-value=1.4e-06 Score=46.25 Aligned_cols=21 Identities=48% Similarity=1.179 Sum_probs=18.2
Q ss_pred CCCccccCcCCeecccCCCCC
Q 030905 117 SGACFNCGRTGHIARECYSRG 137 (169)
Q Consensus 117 ~~~C~~Cg~~GH~a~~C~~~~ 137 (169)
...||+|++.||+|++||.+.
T Consensus 2 ~~~Cf~CG~~GH~ardC~~~~ 22 (26)
T 1dsq_A 2 GPVCFSCGKTGHIKRDCKEEX 22 (26)
T ss_dssp CCBCTTTCCBSSCTTTTTCC-
T ss_pred CCeeEeCCCCCcccccCCCcc
Confidence 357999999999999999864
No 37
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=97.89 E-value=6.1e-06 Score=44.85 Aligned_cols=22 Identities=41% Similarity=0.922 Sum_probs=19.3
Q ss_pred CCCCccccCcCCeecccCCCCC
Q 030905 116 GSGACFNCGRTGHIARECYSRG 137 (169)
Q Consensus 116 ~~~~C~~Cg~~GH~a~~C~~~~ 137 (169)
....||+|++.||++++|+.+.
T Consensus 5 ~~~~C~nCgk~GH~ar~C~~pr 26 (29)
T 1nc8_A 5 KVIRCWNCGKEGHSARQCRAPR 26 (29)
T ss_dssp CCCBCTTTSCBSSCGGGCCSSS
T ss_pred CCCEEEECCccccCHhHCcccc
Confidence 4578999999999999999864
No 38
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=97.83 E-value=1.1e-05 Score=47.11 Aligned_cols=25 Identities=28% Similarity=0.656 Sum_probs=21.5
Q ss_pred CCCCCCccccCcCCeecccCCCCCC
Q 030905 114 GAGSGACFNCGRTGHIARECYSRGR 138 (169)
Q Consensus 114 ~~~~~~C~~Cg~~GH~a~~C~~~~~ 138 (169)
......||+|++.||+|++||....
T Consensus 7 ~~~~~~C~~Cgk~GH~ardCP~~~~ 31 (40)
T 1a6b_B 7 QLDRDQCAYCKEKGHWAKDCPKKPR 31 (40)
T ss_dssp SCCSSSCSSSCCTTCCTTSCSSSCC
T ss_pred CCCCCeeeECCCCCcchhhCcCCcc
Confidence 3466799999999999999998764
No 39
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=97.69 E-value=1.4e-05 Score=46.29 Aligned_cols=17 Identities=53% Similarity=1.251 Sum_probs=16.1
Q ss_pred cccccCCCCccCCCCCC
Q 030905 152 GCYNCGEEGHFARDCPN 168 (169)
Q Consensus 152 ~C~~Cg~~GH~ardCp~ 168 (169)
.||+|+++||++++||+
T Consensus 2 ~C~~Cg~~GH~a~~C~~ 18 (39)
T 2a51_A 2 TCFNCGKPGHTARMCRQ 18 (39)
T ss_dssp BCTTTCCBSSCTTTCCS
T ss_pred eeeccCCCCcccccCCC
Confidence 59999999999999996
No 40
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=97.68 E-value=1.9e-05 Score=47.94 Aligned_cols=20 Identities=50% Similarity=1.008 Sum_probs=18.0
Q ss_pred CCccccccCCCCccCCCCCC
Q 030905 149 GGGGCYNCGEEGHFARDCPN 168 (169)
Q Consensus 149 ~~~~C~~Cg~~GH~ardCp~ 168 (169)
+...||+|+++||+++|||+
T Consensus 5 r~~~C~~Cg~~GH~a~~C~~ 24 (49)
T 2ec7_A 5 KVIRCWNCGKEGHSARQCRA 24 (49)
T ss_dssp CCCBCTTTCCBTCCTTTCCC
T ss_pred CcCeeeecCCCCcChhhCcC
Confidence 36789999999999999986
No 41
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=97.61 E-value=2e-05 Score=50.09 Aligned_cols=19 Identities=47% Similarity=1.340 Sum_probs=17.7
Q ss_pred CccccccCCCCccCCCCCC
Q 030905 150 GGGCYNCGEEGHFARDCPN 168 (169)
Q Consensus 150 ~~~C~~Cg~~GH~ardCp~ 168 (169)
...||+|+++||+|+|||+
T Consensus 4 ~~~C~~Cg~~GH~a~~C~~ 22 (61)
T 2ihx_A 4 RGLCYTCGSPGHYQAQCPK 22 (61)
T ss_dssp TTBCSSSCCBTCCGGGCTT
T ss_pred CCcccccCCCCeehhhCcC
Confidence 5779999999999999997
No 42
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=97.59 E-value=2.3e-05 Score=44.78 Aligned_cols=17 Identities=47% Similarity=1.322 Sum_probs=16.0
Q ss_pred cccccCCCCccCCCCCC
Q 030905 152 GCYNCGEEGHFARDCPN 168 (169)
Q Consensus 152 ~C~~Cg~~GH~ardCp~ 168 (169)
.||+|+++||++++||+
T Consensus 2 ~C~~Cg~~GH~~~~C~~ 18 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRA 18 (37)
T ss_dssp CBSSSCCSSCCTTTSSC
T ss_pred cccccCCCCcchhhCcC
Confidence 59999999999999986
No 43
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=97.58 E-value=1.4e-05 Score=49.56 Aligned_cols=20 Identities=45% Similarity=1.130 Sum_probs=18.1
Q ss_pred CCccccccCCCCccCCCCCC
Q 030905 149 GGGGCYNCGEEGHFARDCPN 168 (169)
Q Consensus 149 ~~~~C~~Cg~~GH~ardCp~ 168 (169)
....||+|+++||++++||+
T Consensus 11 ~~~~C~~Cg~~GH~a~~C~~ 30 (55)
T 1a1t_A 11 KTVKCFNCGKEGHIAKNCRA 30 (55)
T ss_dssp GTCBCTTTCCBSSCGGGCSS
T ss_pred CCcceeeeCCCCcChhhcCC
Confidence 46789999999999999986
No 44
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.57 E-value=3.8e-05 Score=49.12 Aligned_cols=20 Identities=45% Similarity=1.089 Sum_probs=18.0
Q ss_pred CCccccccCCCCccCCCCCC
Q 030905 149 GGGGCYNCGEEGHFARDCPN 168 (169)
Q Consensus 149 ~~~~C~~Cg~~GH~ardCp~ 168 (169)
+...||+|+++||+++|||+
T Consensus 6 r~~~C~~Cg~~GH~a~~C~~ 25 (63)
T 2cqf_A 6 SGDRCYNCGGLDHHAKECKL 25 (63)
T ss_dssp SCCCCSSSCCSSSCTTTCCS
T ss_pred CCCcccccCCCCcChhhCCC
Confidence 45789999999999999995
No 45
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=97.55 E-value=1.1e-05 Score=50.98 Aligned_cols=18 Identities=50% Similarity=1.536 Sum_probs=0.0
Q ss_pred ccccccCCCCccCCCCCC
Q 030905 151 GGCYNCGEEGHFARDCPN 168 (169)
Q Consensus 151 ~~C~~Cg~~GH~ardCp~ 168 (169)
..||+|+++||+|+|||+
T Consensus 2 ~~Cf~Cg~~GH~a~~C~~ 19 (60)
T 1cl4_A 2 GSCFKCGKKGHFAKNCHE 19 (60)
T ss_dssp ------------------
T ss_pred CccccCCCCCcCHhhCcC
Confidence 359999999999999986
No 46
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=97.55 E-value=4e-05 Score=47.97 Aligned_cols=24 Identities=29% Similarity=0.697 Sum_probs=20.9
Q ss_pred CCCCCccccCcCCeecccCCCCCC
Q 030905 115 AGSGACFNCGRTGHIARECYSRGR 138 (169)
Q Consensus 115 ~~~~~C~~Cg~~GH~a~~C~~~~~ 138 (169)
.....||+|++.||++++||....
T Consensus 21 ~~~~~C~~Cge~GH~ardCp~~~~ 44 (56)
T 1u6p_A 21 LDRDQCAYCKEKGHWAKDCPKKPR 44 (56)
T ss_dssp CCTTBCSSSCCBSSCGGGCTTCCC
T ss_pred CCCCcceeCCCCCcccccCcCCcc
Confidence 466789999999999999998654
No 47
>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A
Probab=97.31 E-value=0.00043 Score=50.40 Aligned_cols=68 Identities=25% Similarity=0.502 Sum_probs=51.9
Q ss_pred cceEEEEeeCCCCeeEEecCC-----CCccEEEEeeccccCCcccCCCCCEEEEEEeeCCCC-ce-eEEEEEcCCCcccc
Q 030905 7 SSGTVKWFSAQKGFGFIAPED-----GGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDG-RT-KAVDVEAASRSRRF 79 (169)
Q Consensus 7 ~~G~Vk~~~~~kGfGFI~~~~-----~~~dvF~H~s~i~~~~~~~l~~G~~V~F~~~~~~kG-r~-~A~~V~~~~g~~~~ 79 (169)
.+|++.-- ..||||+.+++ +.+||||..+.|...+ |..||.|+-.+.....+ |. .-+.|..+++.++.
T Consensus 51 ~~Gvlei~--~dG~GFlr~~~~~y~~~~~DiyVs~~~irrf~---lr~GD~V~g~vr~~~~~ek~~~l~~v~~vng~~pe 125 (130)
T 1a62_A 51 GDGVLEIL--QDGFGFLRSADSSYLAGPDDIYVSPSQIRRFN---LRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPE 125 (130)
T ss_dssp EEEEEEEC--TTSCEEEECGGGTTCCCTTCEEECHHHHHHTT---CCTTCEEEEEEECCCTTCCSEEEEEEEEETTBCCC
T ss_pred EEEEEEEc--CCCeEEEecCCcCCCCCCCCEEECHHHHhHhC---CCCCCEEEEEEeCCCCCCcccceeEEEeECCCCHH
Confidence 56766643 46999999983 6789999999998754 88999999999876555 33 34678778876654
No 48
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.25 E-value=0.00013 Score=45.42 Aligned_cols=21 Identities=33% Similarity=0.983 Sum_probs=18.1
Q ss_pred CCCCccccCcCCeecccCCCC
Q 030905 116 GSGACFNCGRTGHIARECYSR 136 (169)
Q Consensus 116 ~~~~C~~Cg~~GH~a~~C~~~ 136 (169)
....||+|++.||++++||..
T Consensus 6 ~~~~C~kCGk~GH~~k~Cp~~ 26 (55)
T 2ysa_A 6 SGYTCFRCGKPGHYIKNCPTN 26 (55)
T ss_dssp SSCCCTTTCCTTSCGGGCSGG
T ss_pred CCCccccCCCcCcccccCCCC
Confidence 445799999999999999954
No 49
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=96.46 E-value=0.0021 Score=47.69 Aligned_cols=23 Identities=17% Similarity=0.515 Sum_probs=20.0
Q ss_pred CCCCccccCcCCeecccCCCCCC
Q 030905 116 GSGACFNCGRTGHIARECYSRGR 138 (169)
Q Consensus 116 ~~~~C~~Cg~~GH~a~~C~~~~~ 138 (169)
....||+|++.||++++||+...
T Consensus 118 ~~~~C~~Cg~~GH~~r~Cp~~~~ 140 (148)
T 3ts2_A 118 QPKKCHFCQSINHMVASCPLKAQ 140 (148)
T ss_dssp CCCCCTTTCCSSCCGGGCTTTTC
T ss_pred CCCcccccCCcCCEeccCcCCCC
Confidence 35689999999999999998654
No 50
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.79 E-value=0.071 Score=37.69 Aligned_cols=54 Identities=20% Similarity=0.215 Sum_probs=40.0
Q ss_pred ccccceEEEEeeCCCCee-EEecCCCCccEEEEeeccccCCc----ccCCCCCEEEEEEeeC
Q 030905 4 VQRSSGTVKWFSAQKGFG-FIAPEDGGEDLFVHQTSIKSEGF----RTLSEGQTVEFSVDVG 60 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfG-FI~~~~~~~dvF~H~s~i~~~~~----~~l~~G~~V~F~~~~~ 60 (169)
...+.|+|+...+ || ||..+....+-|+|+++|...-+ ..+++||.|...+..-
T Consensus 23 G~iv~G~V~~I~~---fGaFV~l~g~~~~Glvhisel~~~~~~~~~~~~~~Gd~V~VkV~~v 81 (119)
T 2cqo_A 23 YTIFQGEVAMVTD---YGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGR 81 (119)
T ss_dssp TCEEEEEEEEEET---TEEEEECTTCSSCEEEEHHHHCSSCCSCHHHHCCTTCEEEEEEEEE
T ss_pred CCEEEEEEEEEeC---ceEEEEECCCcEEEEEEHHHCCcccccChhhcCCCCCEEEEEEEEE
Confidence 4578999999965 67 56654434689999999975322 3589999999987753
No 51
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=94.79 E-value=0.066 Score=34.91 Aligned_cols=53 Identities=15% Similarity=0.166 Sum_probs=40.5
Q ss_pred ccccceEEEEeeCCCCee-EEecCCCCccEEEEeeccccCCcccCCCCCEEEEEEeeC
Q 030905 4 VQRSSGTVKWFSAQKGFG-FIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVG 60 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfG-FI~~~~~~~dvF~H~s~i~~~~~~~l~~G~~V~F~~~~~ 60 (169)
...+.|+|+...+ || ||..++ +.+-|+|+|++...-+..+++||.|...+..-
T Consensus 6 G~iv~G~V~~v~~---~G~fV~l~~-~~~Gllh~sel~~~~~~~~~~Gd~V~v~V~~v 59 (80)
T 2k52_A 6 GKFYKGVVTRIEK---YGAFINLNE-QVRGLLRPRDMISLRLENLNVGDEIIVQAIDV 59 (80)
T ss_dssp TCEEEEEEEEEET---TEEEEEEET-TEEEEECGGGCSSCCGGGCCTTCEEEEEEEEE
T ss_pred CCEEEEEEEEEeC---CEEEEEECC-CCEEEEEHHHCCcccceeeCCCCEEEEEEEEE
Confidence 4678999999864 67 455554 47899999999754334699999999988753
No 52
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=94.66 E-value=0.052 Score=48.90 Aligned_cols=61 Identities=25% Similarity=0.433 Sum_probs=46.7
Q ss_pred cccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccCCcccCCCCCEEEEEEeeCCCCceeEEEEEcCC
Q 030905 5 QRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGRTKAVDVEAAS 74 (169)
Q Consensus 5 ~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~~~~l~~G~~V~F~~~~~~kGr~~A~~V~~~~ 74 (169)
..++|+|+- ..|||||+.+++ .+|||+.-.++.. .-.||+|...+... ++++.|.=|.++.
T Consensus 20 ~~~~G~~~~--~~~GfgF~~~d~-~~difi~~~~~~~-----a~~GD~V~v~i~~~-~~~~eg~v~~ile 80 (644)
T 2id0_A 20 PRAEGVVKA--TEKGFGFLEVDA-QKSYFIPPPQMKK-----VMHGDRIIAVIHSE-KERESAEPEELVE 80 (644)
T ss_dssp CEEEEEEEC--CSSSCEEEECSS-SCEEEECHHHHTT-----SCTTCEEEEEEECC-SSSCEEEEEEEEE
T ss_pred CeEEEEEEE--ecCCcEEEEECC-CCCEEECHHHHhc-----CCCCCEEEEEEecC-CCCeEEEEEEEEe
Confidence 457899886 468999999986 4899999888764 46999999998765 4556666555544
No 53
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=93.97 E-value=0.25 Score=40.13 Aligned_cols=63 Identities=14% Similarity=0.118 Sum_probs=46.0
Q ss_pred ccccceEEEEeeCCCCeeEEecCCC-CccEEEEeeccccCCcccCCCCCEEEEEEeeCCCCceeEE
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAPEDG-GEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGRTKAV 68 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~~~~-~~dvF~H~s~i~~~~~~~l~~G~~V~F~~~~~~kGr~~A~ 68 (169)
.....|+|++.+ +.||....-.. +.|+|+|+|++...--..+++||.|...+..++++|..|.
T Consensus 70 G~~~~g~V~~v~--~~~GaFVdiG~~~~d~lvp~sel~~~~~~~~~~Gd~v~v~l~iD~~~Ri~ls 133 (285)
T 3go5_A 70 DQFGWGRVTEVR--KDLGVFVDTGLPDKEIVVSLDILPELKELWPKKGDQLYIRLEVDKKDRIWGL 133 (285)
T ss_dssp SSCEEEEEEEEE--TTTEEEEECSCTTCCEEEEGGGSCSSGGGSCCTTCEEEEEEEECTTSCEEEE
T ss_pred CCEEEEEEEEEc--cCceEEEEECCCCcEEEEEHHHCCcccccccCCCCEEEEEEEECCCCcEEEE
Confidence 456789999876 34775554444 4799999999865322357999999888888887875554
No 54
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=93.15 E-value=0.22 Score=40.49 Aligned_cols=55 Identities=11% Similarity=0.033 Sum_probs=43.8
Q ss_pred ccccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccCCcccCCCCCEEEEEEeeCCCCceeEE
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGRTKAV 68 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~~~~l~~G~~V~F~~~~~~kGr~~A~ 68 (169)
...++|+|+...+ ||++...+ +.++|+|.+.+.. ++||.|++-+-.++++++.|+
T Consensus 7 G~~v~g~V~~~~~---~G~fv~~~-g~egllp~se~~~------~vGdevev~v~~d~~~r~iat 61 (285)
T 3go5_A 7 ASFIVGLIIDEND---RFYFVQKD-GQTYALAKEEGQH------TVGDTVKGFAYTDMKQKLRLT 61 (285)
T ss_dssp TEEEEEEEEEECS---SEEEEEET-TEEEEEEGGGCCC------CTTSEEEEEEEECTTSCEEEE
T ss_pred CCEEEEEEEEEEC---CEEEEEcC-CeEEEEEHHHCcc------ccCCEEEEEEEECCCCCEEEe
Confidence 4578999998864 77666544 5799999999943 899999988888888877775
No 55
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=92.88 E-value=0.56 Score=32.56 Aligned_cols=54 Identities=19% Similarity=0.233 Sum_probs=39.4
Q ss_pred ccccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccC-----CcccCCCCCEEEEEEeeC
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSE-----GFRTLSEGQTVEFSVDVG 60 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~-----~~~~l~~G~~V~F~~~~~ 60 (169)
...+.|+|+...+ ||+...-+.+.+-|+|+|+|... .-..+++||.|...+..-
T Consensus 31 G~~~~G~V~~v~~---~G~FV~l~~~~~Glvhisel~~~~~~~~~~~~~~vGd~V~vkV~~v 89 (115)
T 2khi_A 31 GTKLTGRVTNLTD---YGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDI 89 (115)
T ss_dssp SCEEEEEEEEEET---TEEEEECSTTCEEEEETTSSSCSSTTCSSTTTCCTTCEEEEEEEEE
T ss_pred CCEEEEEEEEEEC---CEEEEEECCCCEEEEEHHHCCccccccCcccEECCCCEEEEEEEEE
Confidence 4568999999865 77544434457999999999642 123689999999988754
No 56
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=92.80 E-value=0.25 Score=35.25 Aligned_cols=64 Identities=22% Similarity=0.259 Sum_probs=43.7
Q ss_pred ccccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccCC----cccCCCCCEEEEEEeeC-C-CCceeEEEEE
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDVG-E-DGRTKAVDVE 71 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~----~~~l~~G~~V~F~~~~~-~-kGr~~A~~V~ 71 (169)
...+.|+|+...+ ||++..-+.+.+-|+|+|+|...- -..|++||.|...+..- . +++ ..+.+.
T Consensus 8 G~iv~G~V~~i~~---~G~FV~l~~~~~Glihisel~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~k-I~LSlk 77 (130)
T 2k4k_A 8 GSVYTGKVTGLQA---YGAFVALDEETQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAVDEEKGK-ISLSIR 77 (130)
T ss_dssp TCEEEEEEEEEET---TEEEEEEETTEEEEEEGGGTSSSCCSCGGGTCCTTCEEEEEEEEEETTTTE-EEEESH
T ss_pred CCEEEEEEEEEeC---CeEEEEECCCcEEEEEHHHCCcccccCccccCCCCCEEEEEEEEEeCCCCE-EEEEEe
Confidence 4678999999854 675544333579999999997432 14689999999887753 3 553 333443
No 57
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=91.97 E-value=0.28 Score=42.05 Aligned_cols=68 Identities=18% Similarity=0.397 Sum_probs=49.8
Q ss_pred cceEEEEeeCCCCeeEEecC-----CCCccEEEEeeccccCCcccCCCCCEEEEEEeeCCCC-ce-eEEEEEcCCCcccc
Q 030905 7 SSGTVKWFSAQKGFGFIAPE-----DGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDG-RT-KAVDVEAASRSRRF 79 (169)
Q Consensus 7 ~~G~Vk~~~~~kGfGFI~~~-----~~~~dvF~H~s~i~~~~~~~l~~G~~V~F~~~~~~kG-r~-~A~~V~~~~g~~~~ 79 (169)
..|++--. ..|||||.+. .+.+||||..+.|+..+ |+.||.|+=.+.....+ +. .-..|..+++.++.
T Consensus 58 ~~g~le~~--~~g~gflr~~~~~y~~~~~d~yvs~~~ir~~~---lr~gd~v~g~~r~~~~~e~~~~l~~v~~vng~~p~ 132 (427)
T 3l0o_A 58 GEGVLEIH--PEGFGFLRRIEDNLLPSNDDIYISPSQIRKFN---LNTGDIISGVIRKPKEGEKYFAMIKIEAINYRPVE 132 (427)
T ss_dssp EEEEEEEC--TTSCEEEECGGGTTCCCSSCEEECHHHHHHTT---CCTTCEEEEEEECCCSSSCSEEEEEEEEETTEEC-
T ss_pred EEEEEEEc--CCCceEeeCCccCCCCCCCCeeeCHHHHHhcC---CCCCCEEEEEEeCCCCCcccccceEEEecCCCChH
Confidence 45555544 4699999987 46789999999999874 88999999998876555 32 33567777775543
No 58
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.97 E-value=0.28 Score=33.51 Aligned_cols=57 Identities=26% Similarity=0.309 Sum_probs=41.6
Q ss_pred ccccceEEEEeeCCCCee-EEecCC--CCccEEEEeeccccCC-----cccCCCCCEEEEEEeeCCCC
Q 030905 4 VQRSSGTVKWFSAQKGFG-FIAPED--GGEDLFVHQTSIKSEG-----FRTLSEGQTVEFSVDVGEDG 63 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfG-FI~~~~--~~~dvF~H~s~i~~~~-----~~~l~~G~~V~F~~~~~~kG 63 (169)
...+.|+|+..-+ || ||..++ ...+-|+|+|+|.... -..+++||.|...+..-..+
T Consensus 13 G~i~~G~V~~v~~---fG~FV~l~~~~~~~~Glvhisel~~~~~~~~~~~~~~~Gd~V~VkV~~vd~~ 77 (103)
T 2eqs_A 13 GDIYNGKVTSIMQ---FGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTGT 77 (103)
T ss_dssp TCEEEEEEEEECS---SCEEEEECSSSSCCEEEECGGGTSSSSCCCCHHHHCCTTCEEEEEEEEEETT
T ss_pred CCEEEEEEEEEec---cEEEEEEcCCCCCeEEEEEHHHCCCCcccCCcccEeCCCCEEEEEEEEEECC
Confidence 4678999999843 77 666665 2578999999994221 14589999999988765444
No 59
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=91.56 E-value=0.29 Score=36.43 Aligned_cols=53 Identities=15% Similarity=0.177 Sum_probs=38.8
Q ss_pred ccccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccC------Cc--------ccCCCCCEEEEEEeeC
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSE------GF--------RTLSEGQTVEFSVDVG 60 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~------~~--------~~l~~G~~V~F~~~~~ 60 (169)
.+.+.|+|+.-.+ ||+...-.. .|.|+|+|.|... .. ..+++||.|.+.+..-
T Consensus 84 Gev~~G~V~~v~~---fG~FV~l~~-~dglvhis~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~v 150 (171)
T 1y14_B 84 GEVVDGTVVSCSQ---HGFEVQVGP-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGC 150 (171)
T ss_dssp TCEEEEEEEEEET---TEEEEEETT-EEEEEEGGGSCTTCEECC-----CEECSSCEECTTCEEEEEEEEE
T ss_pred CCEEEEEEEEEec---CEEEEEecC-eEEEEEHHHCCCCceECcccCceEEeccceEECCCCEEEEEEEEE
Confidence 4578999999875 887665544 8999999998532 00 3478899999887653
No 60
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=91.07 E-value=0.36 Score=37.65 Aligned_cols=53 Identities=15% Similarity=0.177 Sum_probs=39.8
Q ss_pred ccccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccC------Cc--------ccCCCCCEEEEEEeeC
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSE------GF--------RTLSEGQTVEFSVDVG 60 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~------~~--------~~l~~G~~V~F~~~~~ 60 (169)
.+.+.|+|+.-.+ ||+...-.. .|.|||+|.|... .. ..+++||.|.+.+..-
T Consensus 84 Gev~~G~V~~vt~---fG~FVelg~-~dGlVhiS~l~d~~~~d~~~~~w~~~~~~~~~~~Gd~VrVkV~~v 150 (215)
T 2b8k_G 84 GEVVDGTVVSCSQ---HGFEVQVGP-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGC 150 (215)
T ss_dssp TEEEEEEEEEEET---TEEEEECTT-SEEEEEGGGSCSSCCCBSSCSSCEEECSSCEEETTCEEEEEEEEE
T ss_pred CCEEEEEEEEEec---ceEEEEecC-cEEEEEHHHCCccceeccccccceeeccccEECCCCEEEEEEEEE
Confidence 4568899999874 887766555 8999999999632 00 3478899999987753
No 61
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=90.05 E-value=0.68 Score=35.08 Aligned_cols=54 Identities=7% Similarity=0.016 Sum_probs=36.6
Q ss_pred ccccceEEEEeeCCCCee-EEecC-CCCccEEEEeeccccCC----cccCCCCCEEEEEEeeC
Q 030905 4 VQRSSGTVKWFSAQKGFG-FIAPE-DGGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDVG 60 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfG-FI~~~-~~~~dvF~H~s~i~~~~----~~~l~~G~~V~F~~~~~ 60 (169)
...+.|+|+... -|| ||..+ ..+.+=|+|+|+|...- -..+++||.|...+..-
T Consensus 16 G~iv~G~V~~I~---~fGaFV~L~e~~g~eGLvhiSels~~~v~~~~~~~~vGd~V~VkVl~v 75 (182)
T 1kl9_A 16 EDVVMVNVRSIA---EMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRV 75 (182)
T ss_dssp TCEEEEEEEEEC---SSEEEEEETTTTTEEEEEEGGGC------------CTTCEEEEEEEEE
T ss_pred CCEEEEEEEEEe---ccEEEEEEccCCCcEEEEEHHHCCCcccCCHHHhcCCCCEEEEEEEEE
Confidence 567899999885 588 66664 34578999999996532 24588999999987753
No 62
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=89.84 E-value=1.9 Score=28.22 Aligned_cols=61 Identities=15% Similarity=0.157 Sum_probs=39.3
Q ss_pred ccceEEEEeeCCCCeeEEecCCCC--------ccEEEEeeccccCCcccCCCCCEEEEEEeeCCCCceeEEEEE
Q 030905 6 RSSGTVKWFSAQKGFGFIAPEDGG--------EDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGRTKAVDVE 71 (169)
Q Consensus 6 ~~~G~Vk~~~~~kGfGFI~~~~~~--------~dvF~H~s~i~~~~~~~l~~G~~V~F~~~~~~kGr~~A~~V~ 71 (169)
..+|+|+..+...+- |+...+. .-.-|.+.+ ...+..|++||.|.|+++....+ +.-+.|+
T Consensus 9 ~~~G~V~~id~~~~~--iTi~H~pI~~l~wpaMTM~F~v~~--~~~l~~lk~Gd~V~F~~~~~~~~-~~it~i~ 77 (80)
T 2qcp_X 9 SATGVVKGIDLESKK--ITIHHDPIAAVNWPEMTMRFTITP--QTKMSEIKTGDKVAFNFVQQGNL-SLLQDIK 77 (80)
T ss_dssp EEEEEEEEEETTTTE--EEEEECCBGGGTBCSEEEEEECCT--TCEECCCCTTCEEEEEEEEETTE-EEEEEEE
T ss_pred EEEEEEEEEcCCCCE--EEEEcCCcccCCCCceEEEEEccC--hhhhhcCCCCCEEEEEEEEeCCE-EEEEEEE
Confidence 478999999987655 5544322 112233322 12256799999999999987655 5655554
No 63
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=89.79 E-value=3 Score=27.39 Aligned_cols=61 Identities=15% Similarity=0.208 Sum_probs=39.8
Q ss_pred cceEEEEeeCCCCeeEEecCCCC-c-------cEEEEeeccccCCcccCCCCCEEEEEEeeCCCCceeEEEEEcC
Q 030905 7 SSGTVKWFSAQKGFGFIAPEDGG-E-------DLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGRTKAVDVEAA 73 (169)
Q Consensus 7 ~~G~Vk~~~~~kGfGFI~~~~~~-~-------dvF~H~s~i~~~~~~~l~~G~~V~F~~~~~~kGr~~A~~V~~~ 73 (169)
.+|+|+.++.+. |+...+. . -.-|.+.+ ...+..|++||+|.|+++....|.+.-+.|+..
T Consensus 6 ~~G~V~~vd~~~----iTi~H~pI~~l~wPaMTM~F~v~~--~~~l~~lk~Gd~V~F~~~~~~~g~~~it~i~~~ 74 (82)
T 2l55_A 6 AVGRIQSIGERS----LIIAHEAIPSAQWGAMTMEFAAPP--AGLPQGLKAGDRVAFSFRLDPHGMATLVTVAPQ 74 (82)
T ss_dssp EEEEEEECCSSE----EEEEECCCTTTTCCCEEEEEECCT--TCCCSSCSTTCEEEEEEEEETTTEEEEEEEEEC
T ss_pred EeEEEEEEcccc----EEEecCCccccCCCceEEEEEcCC--hhHhhcCCCCCEEEEEEEECCCCeEEEEEEEec
Confidence 589999999875 5543221 1 12233322 123577999999999999987744666667654
No 64
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=89.67 E-value=1.7 Score=28.90 Aligned_cols=61 Identities=15% Similarity=0.157 Sum_probs=39.2
Q ss_pred ccceEEEEeeCCCCeeEEecCCCC--------ccEEEEeeccccCCcccCCCCCEEEEEEeeCCCCceeEEEEE
Q 030905 6 RSSGTVKWFSAQKGFGFIAPEDGG--------EDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGRTKAVDVE 71 (169)
Q Consensus 6 ~~~G~Vk~~~~~kGfGFI~~~~~~--------~dvF~H~s~i~~~~~~~l~~G~~V~F~~~~~~kGr~~A~~V~ 71 (169)
..+|+|+..+...+- |+...+. .-.-|.+.+ ...+..|++|++|.|+++....+ +.-+.|+
T Consensus 17 ~~~G~V~~id~~~~~--iTi~H~pI~~l~wpaMTM~F~v~~--~~~l~~lk~Gd~V~F~~~~~~~~-~~it~i~ 85 (88)
T 2vb2_X 17 SATGVVKGIDLESKK--ITIHHDPIAAVNWPEMTMRFTITP--QTKMSEIKTGDKVAFNFVQQGNL-SLLQDIK 85 (88)
T ss_dssp EEEEEEEEEETTTTE--EEEEECCBGGGTBCSEEEEEECCT--TCEECCCCTTCEEEEEEEEETTE-EEEEEEE
T ss_pred EEEEEEEEEcCCCCE--EEEecCCcccCCCCceEEEEEcCC--hhhhhcCCCCCEEEEEEEEeCCE-EEEEEEE
Confidence 478999999987654 5544321 112233322 12256799999999999987655 6655554
No 65
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=88.84 E-value=0.56 Score=32.19 Aligned_cols=53 Identities=21% Similarity=0.186 Sum_probs=38.7
Q ss_pred ccccceEEEEeeCCCCee-EEecCCCCccEEEEeeccccCC----cccCCCCCEEEEEEeeC
Q 030905 4 VQRSSGTVKWFSAQKGFG-FIAPEDGGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDVG 60 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfG-FI~~~~~~~dvF~H~s~i~~~~----~~~l~~G~~V~F~~~~~ 60 (169)
...++|+|+...+ || ||..++ +.+-|+|+++|...- -..+++||.|...+..-
T Consensus 32 G~iv~G~V~~v~~---~G~fV~l~~-~~~Gll~~sel~~~~~~~~~~~~~vGd~V~v~V~~v 89 (109)
T 2khj_A 32 GAIVTGKVTAVDA---KGATVELAD-GVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGV 89 (109)
T ss_dssp SSEEEEEEEEECS---SCEEEECST-TCBCCBCTTCCCSSSSSSGGGSCCTTCEEEEEEEEE
T ss_pred CCEEEEEEEEEEC---CeEEEEECC-CCEEEEEHHHcCcccccChhhccCCCCEEEEEEEEE
Confidence 4578999999854 45 455544 478999999996432 13589999999888754
No 66
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=87.36 E-value=0.65 Score=39.79 Aligned_cols=65 Identities=25% Similarity=0.510 Sum_probs=46.4
Q ss_pred cceEEEEeeCCCCeeEEecC-----CCCccEEEEeeccccCCcccCCCCCEEEEEEeeCCCC-ce-eEEEEEcCCCc
Q 030905 7 SSGTVKWFSAQKGFGFIAPE-----DGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDG-RT-KAVDVEAASRS 76 (169)
Q Consensus 7 ~~G~Vk~~~~~kGfGFI~~~-----~~~~dvF~H~s~i~~~~~~~l~~G~~V~F~~~~~~kG-r~-~A~~V~~~~g~ 76 (169)
..|++--. ..||||+.+. .+.+||||..+.|+..+ |+.||.|+=.+.....+ |. .-.+|..+++.
T Consensus 54 ~~g~le~~--~~g~gflr~~~~~~~~~~~d~yvs~~~ir~~~---lr~gd~v~g~~r~~~~~ER~faLl~v~~vn~~ 125 (422)
T 3ice_A 54 GDGVLEIL--QDGFGFLRSADSSYLAGPDDIYVSPSQIRRFN---LRTGDTISGKIRPPKEGERYFALLKVNEVNFD 125 (422)
T ss_dssp EEEEEEEC--TTSCEEEECGGGTTCCCTTCEEBCHHHHHHHT---CCTTCEEEEEEECCCSSCCSEEEEEEEEESSS
T ss_pred EEEEEEEc--CCCceEeeCCCcCCCCCCCCeeeCHHHHHhcC---CCCCCEEEEEEeCCCccchHHHHhccCcccCC
Confidence 45666544 4699999984 35689999999999864 89999999988876554 22 23455555543
No 67
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=87.11 E-value=1.6 Score=35.13 Aligned_cols=54 Identities=28% Similarity=0.338 Sum_probs=40.7
Q ss_pred ccccceEEEEeeCCCCee-EEecCC-CCccEEEEeeccccCC----cccCCCCCEEEEEEeeC
Q 030905 4 VQRSSGTVKWFSAQKGFG-FIAPED-GGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDVG 60 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfG-FI~~~~-~~~dvF~H~s~i~~~~----~~~l~~G~~V~F~~~~~ 60 (169)
...+.|+|+...+ || ||..++ .+.+-|+|+|+|...- -..+++||.|...+..-
T Consensus 12 Gdiv~G~V~~I~~---fGaFV~L~e~~gieGlIhiSels~~~v~~~~~~~kvGd~V~vkVi~v 71 (275)
T 3aev_A 12 GEFVVATVKRIHN---YGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRV 71 (275)
T ss_dssp TCEEEEEEEEEET---TEEEEEETTSTTCEEEEEGGGSCSSCCSCGGGTCCTTCEEEEEEEEE
T ss_pred CCEEEEEEEEEEC---cEEEEEECCCCCeEEEEEHHHcCcccccCHHhccCCCCEEEEEEEEE
Confidence 4678999999854 66 666653 4579999999996432 14689999999988754
No 68
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=84.52 E-value=3 Score=36.57 Aligned_cols=69 Identities=20% Similarity=0.222 Sum_probs=50.7
Q ss_pred cccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccCC------------c-ccCCCCCEEEEEEeeCC---CCceeEE
Q 030905 5 QRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG------------F-RTLSEGQTVEFSVDVGE---DGRTKAV 68 (169)
Q Consensus 5 ~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~------------~-~~l~~G~~V~F~~~~~~---kGr~~A~ 68 (169)
..+.|+|+..-+--.=-||....+ .+-|+|++++...- . ..|++||.|..++...+ ||..-..
T Consensus 47 nIY~GkV~rv~p~~~aAFVdiG~g-k~gfLhisei~~~~~~~~~~~~~~~~i~d~lk~Gq~VlVQV~Ke~~g~KGa~lTt 125 (517)
T 2bx2_L 47 NIYKGKITRIEPSLEAAFVDYGAE-RHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTT 125 (517)
T ss_dssp CEEEEEEEEEETTTTEEEEESSSS-SCEEEEGGGSCGGGCC-------CCCGGGTCCTTCEEEEEEEECCCTTCCCEEES
T ss_pred CEEEEEEEEeccCCceEEEEeCCC-cEEEEEHHHcChhhhccccccccccchhhhccCCCEEEEEEEeeccccCCceEEe
Confidence 468999999999888999998765 79999999985321 1 24889999999999865 5532333
Q ss_pred EEEcCC
Q 030905 69 DVEAAS 74 (169)
Q Consensus 69 ~V~~~~ 74 (169)
+|++++
T Consensus 126 ~isl~G 131 (517)
T 2bx2_L 126 FISLAG 131 (517)
T ss_dssp SCCEEC
T ss_pred eEEecc
Confidence 444444
No 69
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=83.90 E-value=1.2 Score=32.88 Aligned_cols=52 Identities=13% Similarity=0.151 Sum_probs=36.8
Q ss_pred ccccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccC-C---------------cccCCCCCEEEEEEee
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSE-G---------------FRTLSEGQTVEFSVDV 59 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~-~---------------~~~l~~G~~V~F~~~~ 59 (169)
.+.+.|+|+.-.+ ||+...-.. -+.|+|+|.|... - -..+++||.|.+.+..
T Consensus 82 Gev~~G~V~~v~~---fG~fV~l~~-~~glvhis~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~ 149 (172)
T 2c35_B 82 GEVVDAVVTQVNK---VGLFTEIGP-MSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVG 149 (172)
T ss_dssp TCEEEEEEEEEET---TEEEEEETT-EEEEEEGGGSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEEEEE
T ss_pred CCEEEEEEEEEeC---CEEEEEECC-EEEEEEHHHCCCCcEECCCCCccEEEeCCCCEEECCCCEEEEEEEE
Confidence 4568899999874 777655544 4599999988532 0 1147789999988765
No 70
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=82.94 E-value=3.3 Score=30.71 Aligned_cols=53 Identities=19% Similarity=0.249 Sum_probs=40.3
Q ss_pred ccccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccCCc---------------ccCCCCCEEEEEEeeC
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGF---------------RTLSEGQTVEFSVDVG 60 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~~---------------~~l~~G~~V~F~~~~~ 60 (169)
.+.+.|+|+.-+. ||+..... ..|-++|++.|....+ ..+++||.|.+.+..-
T Consensus 82 Gev~~G~V~~v~~---~G~fv~l~-~~~glvh~s~l~~d~~~~d~~~~~~~g~~~~~~~~~Gd~VrvkV~~v 149 (180)
T 4ayb_E 82 QEVVEGEVLQVDN---YGVFVNLG-PMDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQKGDKVRARVISV 149 (180)
T ss_dssp TCEEEEEEEEEET---TEEEEECS-SSEEEEEGGGSCSSCEEECSSSCCEEETTTCCCCCTTCEEEEEEEEE
T ss_pred CCEEEEEEeeecc---ceEEEEEC-CccceEEeeecCCCccccchhcceEEEeccCeEECCCCEEEEEEEEE
Confidence 4568899999874 67666554 4789999999976532 2589999999998753
No 71
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=82.49 E-value=3 Score=31.08 Aligned_cols=53 Identities=19% Similarity=0.115 Sum_probs=38.4
Q ss_pred ccccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccCC---------------cccCCCCCEEEEEEeeC
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG---------------FRTLSEGQTVEFSVDVG 60 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~---------------~~~l~~G~~V~F~~~~~ 60 (169)
...+.|+|+.-.+ ||+...-.. .+-|+|+|.+.... -..+++||.|.+.+..-
T Consensus 82 Gev~~G~V~~v~~---~G~fV~l~~-~eglvhis~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~v 149 (187)
T 1go3_E 82 YELIEGEVVDVVE---FGSFVRLGP-LDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAI 149 (187)
T ss_dssp TCEEEEEEEEEET---TEEEEECSS-SEEEEEGGGSCSSCEEECCC--CEEETTTCCEECTTCEEEEEEEEE
T ss_pred CCEEEEEEEEEeC---cEEEEEEcC-ccEEEEhHHhCCCcceECCccceEEecCCCeEEcCCCEEEEEEEEE
Confidence 4568899999874 665554443 79999999986321 14588999999988753
No 72
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=81.93 E-value=0.95 Score=33.71 Aligned_cols=53 Identities=17% Similarity=0.271 Sum_probs=37.9
Q ss_pred ccccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccCC-c-------------ccCCCCCEEEEEEeeC
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG-F-------------RTLSEGQTVEFSVDVG 60 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~-~-------------~~l~~G~~V~F~~~~~ 60 (169)
.+.+.|+|+.-.+ |||...-+. -+.|+|+|.|...- | ..+++||.|.+.+..-
T Consensus 85 Gev~~G~V~~v~~---fG~FV~l~~-~~glVh~s~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvkV~~v 151 (172)
T 3h0g_G 85 GEVVDAIVTTVNK---MGFFANIGP-LNVFVSSHLVPPDMKFDPTANPPNYSGEDQVIEKGSNVRLKIVGT 151 (172)
T ss_dssp TCEEECCCCEEET---TEEECCBTT-BCCEEEGGGSCTTCCCBSSSSSCBEESSSCEECSSCCEEEEEEEE
T ss_pred CCEEEEEEEEEEc---ceEEEEeCC-eEEEEEHHHCCCccccCcccccceEecCCcEECCCCEEEEEEEEE
Confidence 3567888888874 887766554 56999999995320 1 3578999999888753
No 73
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=81.67 E-value=3.2 Score=33.98 Aligned_cols=54 Identities=9% Similarity=0.105 Sum_probs=40.8
Q ss_pred ccccceEEEEeeCCCCee-EEecCC-CCccEEEEeeccccCC----cccCCCCCEEEEEEeeC
Q 030905 4 VQRSSGTVKWFSAQKGFG-FIAPED-GGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDVG 60 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfG-FI~~~~-~~~dvF~H~s~i~~~~----~~~l~~G~~V~F~~~~~ 60 (169)
...+.|+|+...+ || ||..++ .+.+-|+|+|+|...- -..+++||.|...+..-
T Consensus 14 G~iv~G~V~~I~~---fGaFV~L~ey~gveGLvhiSels~~~i~~~~~~~kvGd~V~VkVl~v 73 (308)
T 1q8k_A 14 EDVVMVNVRSIQE---MGAYVSLLEYNNIEGMIHLSELSRRRIRSINKLIRIGRNECVKVIRV 73 (308)
T ss_dssp CCEEEEEEEEEET---TEEEEESCTTTSCCEEECGGGTSCSSCSCCTTTCSSSCEEEEEEEEE
T ss_pred CCEEEEEEEEEeC---cEEEEEECCCCCeEEEEEhHHcCcccccCHHHhcCCCCEEEEEEEEE
Confidence 4578999999975 77 666553 4579999999996432 24588999999988754
No 74
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=80.47 E-value=2.8 Score=31.39 Aligned_cols=54 Identities=7% Similarity=-0.015 Sum_probs=36.4
Q ss_pred ccccceEEEEeeCCCCee-EEecC-CCCccEEEEeeccccCC----cccCCCCCEEEEEEeeC
Q 030905 4 VQRSSGTVKWFSAQKGFG-FIAPE-DGGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDVG 60 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfG-FI~~~-~~~~dvF~H~s~i~~~~----~~~l~~G~~V~F~~~~~ 60 (169)
...+.|+|+... -|| ||..+ ..+.+-|+|+|+|...- -..+++||.|...+..-
T Consensus 16 G~iv~G~V~~i~---~fGaFV~L~e~~gveGLvhiSels~~~v~~~~~~~~vGd~V~vkVl~v 75 (175)
T 2a19_A 16 DDIVMVNVQQIA---EMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLRV 75 (175)
T ss_dssp TCEEEEEEEEEE---TTEEEEEETTTTTCEEEEECC--------CCCCCCCTTSEEEEEEEEE
T ss_pred CCEEEEEEEEEe---cceEEEEEcCCCCcEEEEEHHHcCCcccCCHHHcCCCCCEEEEEEEEE
Confidence 467899999884 577 66664 24578999999996432 24588999999987754
No 75
>2hqh_E Restin; beta/BETA structure, zinc finger motif, structural protein, binding; 1.80A {Homo sapiens}
Probab=77.65 E-value=0.55 Score=24.32 Aligned_cols=15 Identities=40% Similarity=0.933 Sum_probs=9.3
Q ss_pred ccccCCCCccCCCCC
Q 030905 153 CYNCGEEGHFARDCP 167 (169)
Q Consensus 153 C~~Cg~~GH~ardCp 167 (169)
|-.|...||++.||+
T Consensus 6 Ce~CE~FGH~t~~C~ 20 (26)
T 2hqh_E 6 CEICEMFGHWATNCN 20 (26)
T ss_dssp ETTTTEESSCGGGCC
T ss_pred chHHHHhCcccccCC
Confidence 556666666666664
No 76
>2kct_A Cytochrome C-type biogenesis protein CCME; solution structure, heme chaperone, cytochrome C biogenesis, OB-fold domain, NESG, PSI-2; NMR {Desulfovibrio vulgaris str}
Probab=77.13 E-value=9.4 Score=25.72 Aligned_cols=63 Identities=13% Similarity=0.197 Sum_probs=47.5
Q ss_pred cceEEEEeeCCCCeeEEecCC--CCccEEEEeeccccCCcccCCCCCEEEEEEeeCC-CCceeEEEEEc
Q 030905 7 SSGTVKWFSAQKGFGFIAPED--GGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGE-DGRTKAVDVEA 72 (169)
Q Consensus 7 ~~G~Vk~~~~~kGfGFI~~~~--~~~dvF~H~s~i~~~~~~~l~~G~~V~F~~~~~~-kGr~~A~~V~~ 72 (169)
..|+|+|-.....+=|+..|. ....|-|.++-+... .+++|+.|.-+=.-.+ +|...|.+|-.
T Consensus 18 ~~GSv~r~~~~~~v~F~vtD~~~~~~~v~V~Y~GilPD---lFrEGqgVV~~G~l~~~~g~F~A~evLa 83 (94)
T 2kct_A 18 AADGLTMLDGAPGVRFRLEDKDNTSKTVWVLYKGAVPD---TFKPGVEVIIEGGLAPGEDTFKARTLMT 83 (94)
T ss_dssp CSTTCEECTTSSEEEEEEECSSCTTCEEEEEEESCCCT---TCCTTCEEEEEEEECTTCSEEEEEEEEE
T ss_pred eCCeEEecCCCCEEEEEEEcCCCCCcEEEEEECCCCCc---cccCCCeEEEEEEEeCCCCEEEEeEEEE
Confidence 455666654456788999875 257899999998764 4789999988777666 78789998864
No 77
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=74.96 E-value=16 Score=25.03 Aligned_cols=54 Identities=17% Similarity=0.076 Sum_probs=35.1
Q ss_pred ccccceEEEEeeCCCCee-EEecCCCCccEEEEeecccc------CCcccCCCCCEEEEEEeeCC
Q 030905 4 VQRSSGTVKWFSAQKGFG-FIAPEDGGEDLFVHQTSIKS------EGFRTLSEGQTVEFSVDVGE 61 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfG-FI~~~~~~~dvF~H~s~i~~------~~~~~l~~G~~V~F~~~~~~ 61 (169)
.+.+.|+|+... -|| ||.......+ .||.+.+.. ..-..+++||.|...+..-.
T Consensus 22 G~i~~G~V~~v~---~fG~fV~l~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd 82 (119)
T 1wi5_A 22 GMLLTGTVSSLE---DHGYLVDIGVDGTR-AFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVK 82 (119)
T ss_dssp TCEEEEEEEEEC---SSEEEEECCCSSCE-EEEEHHHHHHHHHHHSSSCCCCTTCEEEEEEEECC
T ss_pred CCEEEEEEEEEe---CceEEEEECCCCeE-EEEEEecccccccccCccCEeCCCCEEEEEEEEEe
Confidence 567899999983 577 5555423345 455554421 11246899999999888754
No 78
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=74.86 E-value=2.1 Score=34.19 Aligned_cols=55 Identities=22% Similarity=0.286 Sum_probs=41.2
Q ss_pred ccccceEEEEeeCCCCee-EEecCC-CCccEEEEeeccccCCc----ccCCCCCEEEEEEeeCC
Q 030905 4 VQRSSGTVKWFSAQKGFG-FIAPED-GGEDLFVHQTSIKSEGF----RTLSEGQTVEFSVDVGE 61 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfG-FI~~~~-~~~dvF~H~s~i~~~~~----~~l~~G~~V~F~~~~~~ 61 (169)
...+.|+|+...+ || ||..++ .+.+-|+|+|+|...-+ ..+++||.|...+..-.
T Consensus 12 G~iv~G~V~~I~~---~GaFV~l~e~~~~~GlihiSels~~~v~~~~~~~~vGd~V~VkVi~vd 72 (266)
T 3cw2_C 12 GEILIATVKQVFD---YGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRVD 72 (266)
T ss_dssp TCEEEEEEEECCS---SSBEEEETTTTSEECBBCGGGSSCSSCCCHHHHSCTTCEEEEEECCCC
T ss_pred CCEEEEEEEEEec---cEEEEEEcCCCCeEEEEEhHHcCcccccCHHHhCcCCCEEEEEEEEEe
Confidence 5678999999854 66 666653 45799999999964322 35899999999887654
No 79
>1j6q_A Cytochrome C maturation protein E; all-beta protein, heme delivery,cytochrome C maturation, OB- (oligonucleotide binding)fold; NMR {Shewanella putrefaciens} SCOP: b.40.9.1 PDB: 1lm0_A
Probab=74.84 E-value=14 Score=26.57 Aligned_cols=64 Identities=22% Similarity=0.306 Sum_probs=48.2
Q ss_pred cceEEEEeeCCCCeeEEecCCCCccEEEEeeccccCCcccCCCCCEEEEEEeeCCCCceeEEEEEcC
Q 030905 7 SSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGRTKAVDVEAA 73 (169)
Q Consensus 7 ~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~~~~l~~G~~V~F~~~~~~kGr~~A~~V~~~ 73 (169)
..|.|++-.....+=|...|+....|-|.+.-+... .+++|+.|.-+=.-.++|...|.+|-.-
T Consensus 42 ~~GSv~r~~~~~~v~F~vtD~~~~~v~V~Y~GilPD---lFrEGqgVVa~G~l~~~g~F~A~eVLaK 105 (136)
T 1j6q_A 42 TVGSMVRDPNSLHVQFAVHDSLGGEILVTYDDLLPD---LFREGQGIVAQGVLGEDGKLAATEVLAK 105 (136)
T ss_dssp CTTCCEECTTSSCEEEEEECTTCCCEEEEECSCCTT---SCCSSSEEEEEEEECSTTSEEEEEEECC
T ss_pred eCCcEEecCCCCEEEEEEEcCCCCEEEEEECCCCCc---cccCCCeEEEEEEECCCCeEEEEEEEec
Confidence 345555543456799999984557899999998864 4689999988777666788899998753
No 80
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=70.87 E-value=4.9 Score=36.76 Aligned_cols=49 Identities=10% Similarity=0.151 Sum_probs=38.4
Q ss_pred cccceEEEEeeCCCCe--eEEecCCCCccEEEEe-eccccCCcccCCCCCEEEEEEeeC
Q 030905 5 QRSSGTVKWFSAQKGF--GFIAPEDGGEDLFVHQ-TSIKSEGFRTLSEGQTVEFSVDVG 60 (169)
Q Consensus 5 ~~~~G~Vk~~~~~kGf--GFI~~~~~~~dvF~H~-s~i~~~~~~~l~~G~~V~F~~~~~ 60 (169)
..++|++.- ..++| ||+.+++..+|||+.- .++.. .-.||.|..++...
T Consensus 31 ~l~~G~l~~--~~~~~~~gfv~~~~~~~di~I~~~~~~n~-----A~~GD~V~V~i~~~ 82 (760)
T 2vnu_D 31 VLYQGNIQI--SEYNFLEGSVSLPRFSKPVLIVGQKNLNR-----AFNGDQVIVELLPQ 82 (760)
T ss_dssp SEEEEEEEE--CSSBTTEEEECCSSSSSCEEEESHHHHTT-----CCTTCEEEEEECCG
T ss_pred CEEEEEEEE--ecCCCccEEEEcCCCCCCEEEcChhhhcc-----ccCCCEEEEEEecc
Confidence 457787775 45899 9999998778999997 66654 35999999998643
No 81
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=70.14 E-value=3 Score=27.50 Aligned_cols=52 Identities=17% Similarity=0.187 Sum_probs=37.7
Q ss_pred ccccceEEEEeeCCCCee-EEecCC-CCccEEEEee-ccccCCc----ccCCCCCEEEEEEeeC
Q 030905 4 VQRSSGTVKWFSAQKGFG-FIAPED-GGEDLFVHQT-SIKSEGF----RTLSEGQTVEFSVDVG 60 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfG-FI~~~~-~~~dvF~H~s-~i~~~~~----~~l~~G~~V~F~~~~~ 60 (169)
...+.|+|+ .. -|| ||..++ ++.+=|+|+| +|...-+ ..+ +||.|...+..-
T Consensus 12 G~~~~G~V~-v~---~fG~FVel~~~~~~eGLvhis~el~~~~~~~~~~~~-~Gd~V~VkV~~v 70 (88)
T 1luz_A 12 GDVIKGRVY-EK---DYALYIYLFDYPHFEAILAESVKMHMDRYVEYRDKL-VGKTVKVKVIRV 70 (88)
T ss_dssp TCEEEEEEE-EE---TTEEEEEETTCTTSEEEEGGGSSCCHHHHHHHHHHH-TTCEEEEEEEEE
T ss_pred CCEEEEEEE-EE---ccEEEEEECCCCCeEEEEEeeHHhCcccccCHhHEe-CCCEEEEEEEEE
Confidence 567899999 54 477 777765 3579999999 9864211 345 999999987754
No 82
>4hti_A Receptor-type tyrosine-protein phosphatase N2; phogrin, IA-2BETA, protein-tyrosine phosphatase, transmembra protein, diabetes, autoimmunity; 1.95A {Homo sapiens} PDB: 4htj_A
Probab=63.63 E-value=2.8 Score=28.75 Aligned_cols=46 Identities=24% Similarity=0.422 Sum_probs=28.9
Q ss_pred eCCCCeeEEecCCC--------------------CccEEEEeeccccCCcccCCCCCEEEEEEeeCCCCceeEEEEE
Q 030905 15 SAQKGFGFIAPEDG--------------------GEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGRTKAVDVE 71 (169)
Q Consensus 15 ~~~kGfGFI~~~~~--------------------~~dvF~H~s~i~~~~~~~l~~G~~V~F~~~~~~kGr~~A~~V~ 71 (169)
+.+.-||||..+.. ...+|.+++.+ +-.|+|.+.+.++. +.|.+|.
T Consensus 6 ~~deeygYIvt~~~~l~~~~G~~l~~~la~~l~l~~~~F~~isV~----------g~aVTFrV~~N~~n-~taadVA 71 (99)
T 4hti_A 6 SEEEARGYIVTDRDPLRPEEGRRLVEDVARLLQVPSSAFADVEVL----------GPAVTFKVSANVQN-VTTEDVE 71 (99)
T ss_dssp ----CCEEEEESCSSCCHHHHHHHHHHHHHHTTCCGGGEEEEEEE----------TTEEEEEECCCTTC-CCHHHHH
T ss_pred CCcceeEEEEECCCCCCHHHHHHHHHHHHHHhCCchhheeeeeec----------CceEEEEeccCCCC-CCHHHHH
Confidence 45677999997643 12345555544 46899999999987 5666554
No 83
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=62.59 E-value=14 Score=32.95 Aligned_cols=52 Identities=13% Similarity=0.188 Sum_probs=36.7
Q ss_pred ccceEEEEeeCCCCeeE-EecCCCCccEEEEeecccc--C--------------CcccCCCCCEEEEEEeeC
Q 030905 6 RSSGTVKWFSAQKGFGF-IAPEDGGEDLFVHQTSIKS--E--------------GFRTLSEGQTVEFSVDVG 60 (169)
Q Consensus 6 ~~~G~Vk~~~~~kGfGF-I~~~~~~~dvF~H~s~i~~--~--------------~~~~l~~G~~V~F~~~~~ 60 (169)
...|+|+.... ||| |..++.+-+.|||+|.|.. . .-..++.||.|+-.+..-
T Consensus 563 ~f~g~V~~V~~---~G~fV~L~~~gieGlVhis~l~~~~d~~~~d~~~~~l~~~~~~~~~lGD~V~VkV~~v 631 (644)
T 2id0_A 563 RFAAEIVDISR---GGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEV 631 (644)
T ss_dssp CEEEEEEEEET---TEEEEEETTTCCEEEEEGGGTCSCGGGEEEETTTTEEEETTEEEEETTCEEEEEEEEE
T ss_pred eEEEEEEEEeC---CceEEEEcCCcEEEEEEchhccCcCceeEEcccccEEEecCCCEeCCCCEEEEEEEEE
Confidence 67899999864 664 5555556899999999852 1 013477888888777654
No 84
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=61.87 E-value=1.6 Score=36.21 Aligned_cols=6 Identities=17% Similarity=0.850 Sum_probs=0.0
Q ss_pred CccccC
Q 030905 119 ACFNCG 124 (169)
Q Consensus 119 ~C~~Cg 124 (169)
.||.|.
T Consensus 316 ~~~~~~ 321 (358)
T 2pk2_A 316 PNYHCQ 321 (358)
T ss_dssp ------
T ss_pred cceecH
Confidence 477774
No 85
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=61.54 E-value=11 Score=35.58 Aligned_cols=49 Identities=10% Similarity=0.135 Sum_probs=38.5
Q ss_pred ccccceEEEEeeCCCCe--eEEecCCCCccEEEEe-eccccCCcccCCCCCEEEEEEee
Q 030905 4 VQRSSGTVKWFSAQKGF--GFIAPEDGGEDLFVHQ-TSIKSEGFRTLSEGQTVEFSVDV 59 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGf--GFI~~~~~~~dvF~H~-s~i~~~~~~~l~~G~~V~F~~~~ 59 (169)
...++|++.- ..++| ||+.+++..+|||+.- .++.. .-.||.|..++..
T Consensus 247 g~l~~G~l~v--~~~~~~egfV~~~~~~~DI~I~~~~~~n~-----A~~GD~V~V~i~~ 298 (977)
T 2wp8_J 247 GVLYQGNIQI--SEYNFLEGSVSLPRFSKPVLIVGQKNLNR-----AFNGDQVIVELLP 298 (977)
T ss_dssp TSSEEEEEEE--CSSBTTEEEECCTTCSSCEEEESHHHHTT-----CCTTCEEEEEECC
T ss_pred CCEEEEEEEE--ccCCCccEEEEcCCCCCCEEEcChHHhhh-----CcCCCEEEEEEec
Confidence 3457787765 46899 9999998778999997 66654 3599999999864
No 86
>2pzo_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskeleton associated protein, P150glued; 2.60A {Homo sapiens} PDB: 3e2u_E
Probab=59.73 E-value=2.4 Score=24.37 Aligned_cols=15 Identities=40% Similarity=0.933 Sum_probs=8.7
Q ss_pred ccccCCCCccCCCCC
Q 030905 153 CYNCGEEGHFARDCP 167 (169)
Q Consensus 153 C~~Cg~~GH~ardCp 167 (169)
|-.|.-.||++.+|+
T Consensus 23 Cd~CEvFGH~t~~Cn 37 (42)
T 2pzo_E 23 CEICEMFGHWATNCN 37 (42)
T ss_dssp ETTTTEESSCGGGCC
T ss_pred cccccccCcccccCC
Confidence 555555555555554
No 87
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=58.06 E-value=25 Score=27.61 Aligned_cols=55 Identities=11% Similarity=0.033 Sum_probs=38.6
Q ss_pred ccccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccCCc-------ccCCCCCEEEEEEeeCC
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGF-------RTLSEGQTVEFSVDVGE 61 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~~-------~~l~~G~~V~F~~~~~~ 61 (169)
...+.|+|+...+. .-|+... ...+-++|+++|...-. ..|++||.|...+..-.
T Consensus 75 GDiV~G~V~~v~~~--ga~VdI~-~~~~GlL~isei~~~~~~~~~~~~~~l~vGD~V~arVi~v~ 136 (251)
T 2je6_I 75 NDIVIGLVEDVEIY--GWVVDIK-APYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENFD 136 (251)
T ss_dssp TCEEEEEEEEECSS--EEEEECS-SSSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEEE
T ss_pred CCEEEEEEEEEeCc--eEEEEcC-CCeEEEEEHHHhcCCccccccchhhcCCCCCEEEEEEEEEC
Confidence 35678899888542 4455544 45789999999985321 26899999998887643
No 88
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=56.00 E-value=28 Score=28.83 Aligned_cols=51 Identities=10% Similarity=-0.001 Sum_probs=38.4
Q ss_pred ccccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccCCcccCCCCCEEEEEEeeC
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVG 60 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~~~~l~~G~~V~F~~~~~ 60 (169)
...++|+|+..+ ++.=||.. ++-+-|+|.+.+... ..+++||+|...+..-
T Consensus 135 GeIV~G~V~ri~--~~~v~VDl--Gk~EgiLp~sE~ip~--E~~~vGD~Vkv~V~~V 185 (344)
T 1hh2_P 135 GTVTTAEVIRVM--GEWADIRI--GKLETRLPKKEWIPG--EEIKAGDLVKVYIIDV 185 (344)
T ss_dssp TCEEEEEEEEEC--SSEEEEEE--TTEEEEEEGGGSCTT--CCCCTTCEEEEEEEEE
T ss_pred CCEEEEEEEEEe--cCcEEEEe--CCeEEEEeHHHcCCC--cCCCCCCEEEEEEEEE
Confidence 457899999986 34445544 357999999999743 5789999999877643
No 89
>3alr_A Nanos protein; zinc-finger, translational repression, RNA, 3'-UTR, metal BI protein; 2.10A {Danio rerio}
Probab=55.29 E-value=5.3 Score=27.54 Aligned_cols=42 Identities=29% Similarity=0.536 Sum_probs=28.9
Q ss_pred CCCCccccCcC--------Ceeccc------CCCCCCCCCCCCCCCCCCccccccCCCC---ccCCCCCCC
Q 030905 116 GSGACFNCGRT--------GHIARE------CYSRGRGGGRGYGGGRGGGGCYNCGEEG---HFARDCPNY 169 (169)
Q Consensus 116 ~~~~C~~Cg~~--------GH~a~~------C~~~~~~~~~~~~g~~~~~~C~~Cg~~G---H~ardCp~~ 169 (169)
....|--|-.. .|..++ ||... .-.|-.|+..| |-.+-||.+
T Consensus 35 ~~~~C~FCrnNGE~~~vy~SH~LKd~~G~V~CPvLR------------~Y~CpiCGATGd~AHT~kYCP~~ 93 (106)
T 3alr_A 35 ERKFCSFCKHNGETEAVYTSHYLKNRDGDVMCPYLR------------QYKCPLCGATGAKAHTKRFCPMV 93 (106)
T ss_dssp ---CCHHHHHTTCCHHHHTSBCSBCTTSCBCCTTGG------------GCCCTTTCCCGGGCCCGGGCTTC
T ss_pred CCCEeECCCCCCcccCccccceeECCCCCCcCCCcc------------cccCCCCCCcCCcccceecCCCC
Confidence 44456666433 588888 87753 46799999999 888899864
No 90
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=52.94 E-value=19 Score=34.79 Aligned_cols=54 Identities=13% Similarity=-0.031 Sum_probs=40.1
Q ss_pred ccccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccCC-----cccCCCCCEEEEEEeeC
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG-----FRTLSEGQTVEFSVDVG 60 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~-----~~~l~~G~~V~F~~~~~ 60 (169)
.+.+.|+|+..- -||....-+.+.+=+||+|.|...- ...+++||.|...|..-
T Consensus 903 G~iv~G~V~~V~---~fGaFV~L~~gveGLVHiSelsd~~~v~~p~~v~kvGd~V~vkVl~V 961 (1219)
T 3psi_A 903 GSIIPVRVERFW---HNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYI 961 (1219)
T ss_dssp TCEEEEEEEEEC---SSCEEEECTTSCEEEECTTSSSSTTSCSCSTTTSCTTCEEEEEEEEE
T ss_pred CCEEEEEEEEEe---cceEEEEeCCCceEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEE
Confidence 577899999874 4665554444579999999997643 23589999999887754
No 91
>1sr3_A APO-CCME; OB fold, beta barrel, flexible C-terminal domain, chaperone; NMR {Escherichia coli} SCOP: b.40.9.1
Probab=49.84 E-value=23 Score=25.49 Aligned_cols=62 Identities=19% Similarity=0.165 Sum_probs=45.6
Q ss_pred cceEEEEeeCCCCeeEEecCCCCccEEEEeeccccCCcccCCCCCEEEEEEeeCCCCceeEEEEEc
Q 030905 7 SSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGRTKAVDVEA 72 (169)
Q Consensus 7 ~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~~~~l~~G~~V~F~~~~~~kGr~~A~~V~~ 72 (169)
..|.|++-.....+=|...|.. ..|-|.++-+... .+++|+.|.-+=.-.+.|...|.+|-.
T Consensus 38 ~~GSv~r~~~~~~v~F~vtD~~-~~v~V~Y~GilPD---lFrEGqgVVa~G~l~~~g~F~A~eVLA 99 (136)
T 1sr3_A 38 MPGSVQRDPNSLKVTFTIYDAE-GSVDVSYEGILPD---LFREGQGVVVQGELEKGNHILAKEVLA 99 (136)
T ss_dssp CTTTCEECSSSSEEEEEEECSS-CEEEEEEESCCCT---TCCTTSEEEEEEEECSSSEEEESSCBC
T ss_pred eCCcEEEcCCCCEEEEEEEeCC-cEEEEEECCCCCc---cccCCCeEEEEEEECCCCeEEEEEEEe
Confidence 3455665434456889998864 6899999998864 468999998776666677778887764
No 92
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=49.23 E-value=14 Score=33.99 Aligned_cols=54 Identities=19% Similarity=0.201 Sum_probs=39.1
Q ss_pred ccccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccCC----cccCCCCCEEEEEEeeC
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDVG 60 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~----~~~l~~G~~V~F~~~~~ 60 (169)
.+.+.|+|+... -||+...-+...|-|||+|+|...- -..+++||.|...|..-
T Consensus 655 G~iv~G~V~~V~---~fGaFV~l~~~~eGLVhiS~Lsd~~v~d~~~~~~vGd~V~VkVi~V 712 (785)
T 3bzc_A 655 GMVLEGVVTNVT---NFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEV 712 (785)
T ss_dssp TCBCCCEEEEEE---TTEEEEECSSSSEEEEETTTSCSSCCSCHHHHCCTTCCCCCBEEEE
T ss_pred CCEEEEEEEEEe---cCCeEEEeCCCcEEEEEHHHcCccccCChhheeCCCCEEEEEEEEE
Confidence 567899999885 4774444344579999999997531 13588999998777653
No 93
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=49.20 E-value=30 Score=25.56 Aligned_cols=53 Identities=9% Similarity=-0.055 Sum_probs=37.1
Q ss_pred cccceEEEEeeCCCCeeEEecCC---------CCccEEEEeeccccCC----cccCCCCCEEEEEEee
Q 030905 5 QRSSGTVKWFSAQKGFGFIAPED---------GGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDV 59 (169)
Q Consensus 5 ~~~~G~Vk~~~~~kGfGFI~~~~---------~~~dvF~H~s~i~~~~----~~~l~~G~~V~F~~~~ 59 (169)
..+.|+|+.-.+. + -||.... ...+=++|+|+|.... ...|++||.|.-.+..
T Consensus 59 diV~G~V~~V~~~-g-a~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~~~~~~~~~~GD~V~akVi~ 124 (179)
T 3m7n_A 59 DVVLGRVVDLRNS-I-ALIEVSSKKGENRGPSNRGIGILHVSNVDEGYVKEISEAVGYLDILKARVIG 124 (179)
T ss_dssp CEEEEEEEEECSS-E-EEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCCSSGGGTCCTTCEEEEEEEE
T ss_pred CEEEEEEEEEeCC-c-EEEEEccccCcccccccCeeEEEEHHHcCcchhhCHhhcCCCCCEEEEEEEC
Confidence 4578899987542 2 2444332 1468899999997642 3568999999988886
No 94
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=48.36 E-value=32 Score=29.00 Aligned_cols=10 Identities=40% Similarity=0.893 Sum_probs=7.6
Q ss_pred CCeeEEecCC
Q 030905 18 KGFGFIAPED 27 (169)
Q Consensus 18 kGfGFI~~~~ 27 (169)
+||+||+-.+
T Consensus 144 kG~aFV~F~~ 153 (437)
T 3pgw_S 144 RGYAFIEYEH 153 (437)
T ss_pred cceEEEeecc
Confidence 7888888654
No 95
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=48.29 E-value=69 Score=24.61 Aligned_cols=55 Identities=11% Similarity=-0.066 Sum_probs=38.7
Q ss_pred ccccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccCC-----cccCCCCCEEEEEEeeCC
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG-----FRTLSEGQTVEFSVDVGE 61 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~-----~~~l~~G~~V~F~~~~~~ 61 (169)
...+.|+|+.-.+. .-|+.. +...+-++|+++|.... ...|++||.|...+..-.
T Consensus 58 GDiV~G~V~~v~~~--~a~V~I-~~~~~g~l~isev~~~~~~~~~~~~l~~GD~V~arVi~v~ 117 (229)
T 2ba0_A 58 GDVVIGIIREVAAN--GWAVDI-YSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNID 117 (229)
T ss_dssp TCEEEEEEEEECSS--EEEEEC-SSSSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEEC
T ss_pred CCEEEEEEEEEeCC--eEEEEe-CCCeEEEEEHHHccccccccchhcccCCCCEEEEEEEEEC
Confidence 35678889888543 344444 44478999999998431 247999999998887643
No 96
>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5
Probab=46.66 E-value=50 Score=20.46 Aligned_cols=54 Identities=15% Similarity=0.117 Sum_probs=34.8
Q ss_pred ccccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccCCcccCCCCCEEEEEEee
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDV 59 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~~~~l~~G~~V~F~~~~ 59 (169)
..++.|+|.+--.. +|=.+..+++ ..+-.|++---......+.+||.|.+++.+
T Consensus 5 ~~~~~G~Vi~~lg~-~~y~V~~~~g-~~~~~~i~Gk~Rk~~i~i~vGD~V~ve~~~ 58 (71)
T 1ah9_A 5 NIEMQGTVLETLPN-TMFRVELENG-HVVTAHISGKMRKNYIRILTGDKVTVELTP 58 (71)
T ss_dssp CEECCEEEEEECSS-SEEEEEETTS-CEEEEEECSSGGGTTCCCCTTCEECCEECS
T ss_pred eeEEEEEEEEEeCC-cEEEEEECCC-CEEEEEEcceEeccCccCCCCCEEEEEEec
Confidence 34568999976542 3334444454 567788876544333456799999999864
No 97
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=46.59 E-value=54 Score=25.25 Aligned_cols=56 Identities=9% Similarity=-0.031 Sum_probs=39.3
Q ss_pred ccccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccCC--------cccCCCCCEEEEEEeeCCC
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG--------FRTLSEGQTVEFSVDVGED 62 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~--------~~~l~~G~~V~F~~~~~~k 62 (169)
...+.|+|+.-.+. .-|+... ...+-++|+++|...- ...|++||.|...+..-.+
T Consensus 67 GDiV~G~V~~v~~~--~~~V~I~-~~~~g~l~isei~~~~~~~~~~~~~~~l~~GD~V~a~Vi~v~~ 130 (235)
T 2z0s_A 67 GDVVIGLIQSVGIM--NWFVDIN-SPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFDK 130 (235)
T ss_dssp TCCEEEEEEEECSS--EEEEECS-SSSCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEEEEECT
T ss_pred CCEEEEEEEEEeCC--eEEEEeC-CCeEEEEEHHHhCCCccccchhhHhhcCCCCCEEEEEEEEECC
Confidence 35678999988542 4455544 3578999999997521 1268999999988876543
No 98
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=46.27 E-value=57 Score=21.04 Aligned_cols=55 Identities=13% Similarity=0.080 Sum_probs=39.5
Q ss_pred ccccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccCCcccCCCCCEEEEEEeeC
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVG 60 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~~~~l~~G~~V~F~~~~~ 60 (169)
...++|+|..--+ .+|=.+..+++ ..+-.|++---......+.+||.|.+++.+-
T Consensus 13 ~ie~~G~Vik~l~-n~~f~V~l~nG-~~~~c~i~GK~Rk~~I~Il~GD~V~ve~~~y 67 (79)
T 3i4o_A 13 AIEVEGRVVEPLP-NAMFRIELENG-HKVLAHISGKMRQHYIRILPEDRVVVELSPY 67 (79)
T ss_dssp CSEEEEEEEEEET-TTEEEEEETTS-CEEEEEECHHHHHTTCCCCTTCEEEEEEETT
T ss_pred eEEEEEEEEEEcC-CCEEEEEeCCC-CEEEEEeCcceecCCccCCCCCEEEEEECcc
Confidence 4567899998765 45555666654 5788999865544345689999999998764
No 99
>3cp3_A Uncharacterized protein; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Corynebacterium diphtheriae nctc 13129ORGANISM_TAXID}
Probab=44.24 E-value=76 Score=21.90 Aligned_cols=30 Identities=13% Similarity=0.183 Sum_probs=22.7
Q ss_pred CccEEEEeeccccCCcccCCCCCEEEEEEeeC
Q 030905 29 GEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVG 60 (169)
Q Consensus 29 ~~dvF~H~s~i~~~~~~~l~~G~~V~F~~~~~ 60 (169)
...||||.+ ...-+..|..+..|.|++...
T Consensus 55 ~~~lyf~ta--~~~K~~~l~~np~V~~~v~~~ 84 (148)
T 3cp3_A 55 QPRVYFRTA--EGTKLFSVNLNSDVLFEVDRF 84 (148)
T ss_dssp SCEEEEEEC----CCSSCTTSCSEEEEEEEEC
T ss_pred CCEEEEEcC--CCchHHHHhcCCcEEEEEEEC
Confidence 358999988 444467888999999999873
No 100
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=41.53 E-value=5.5 Score=36.32 Aligned_cols=57 Identities=30% Similarity=0.400 Sum_probs=0.0
Q ss_pred ccccceEEEEeeCCCCee-EEecCCCCccEEEEeeccccCCc----ccCCCCCEEEEEEeeC-CCCc
Q 030905 4 VQRSSGTVKWFSAQKGFG-FIAPEDGGEDLFVHQTSIKSEGF----RTLSEGQTVEFSVDVG-EDGR 64 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfG-FI~~~~~~~dvF~H~s~i~~~~~----~~l~~G~~V~F~~~~~-~kGr 64 (169)
...++|+|+..- -|| ||.... +.+-|+|+|.|...-+ ..|++||.|...+..- ++++
T Consensus 628 G~i~~G~V~~i~---~fGaFVel~~-g~eGLvHiSel~~~~v~~~~~~~~vGd~V~VkVi~vd~~gr 690 (723)
T 3cdi_A 628 GRVYTGKVTRIV---DFGAFVAIGG-GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGR 690 (723)
T ss_dssp -------------------------------------------------------------------
T ss_pred CcEEEEEEEEEe---cceEEEEeCC-CceEEEEHHHcCCccccCcccccCCCCEEEEEEEEECCCCc
Confidence 356789998874 488 555544 4799999999975321 3588999999887653 3564
No 101
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=39.57 E-value=4.9 Score=36.88 Aligned_cols=57 Identities=26% Similarity=0.374 Sum_probs=28.9
Q ss_pred ccccceEEEEeeCCCCee-EEecCCCCccEEEEeecc----ccCC----cccCCCCCEEEEEEeeCC-CCc
Q 030905 4 VQRSSGTVKWFSAQKGFG-FIAPEDGGEDLFVHQTSI----KSEG----FRTLSEGQTVEFSVDVGE-DGR 64 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfG-FI~~~~~~~dvF~H~s~i----~~~~----~~~l~~G~~V~F~~~~~~-kGr 64 (169)
...++|+|+.. .-|| ||..+. +.+-|+|+|.| ...- -..|++||.|...+..-. +++
T Consensus 668 G~i~~G~V~~i---~~fGaFV~l~~-g~eGLvHiSel~~~~s~~rv~~~~~~~~vGd~V~VkVi~vd~~gr 734 (757)
T 1e3p_A 668 GERILGSVVKT---TTFGAFVSLLP-GKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSRGK 734 (757)
T ss_dssp -----CBEEEC---C-CSCEECCC----CCCCC-------------------CCSSCBCCCCCCCCCSSCC
T ss_pred ccEEEEEEEEc---cccEEEEEEcC-CcEEEEEhHHhccccCCCcccCcccccCCCCEEEEEEEEECCCCC
Confidence 46789999987 4588 666554 47999999999 4321 146899999988876543 564
No 102
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.45 E-value=73 Score=20.03 Aligned_cols=39 Identities=18% Similarity=0.184 Sum_probs=32.9
Q ss_pred ccccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccCC
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG 43 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~ 43 (169)
-.-+-|+|+.-+..+..=||.-+|. ...+++..+|...+
T Consensus 23 GlfYlGtV~kV~~~~~~ClV~FeD~-s~~wv~~kdi~~~~ 61 (68)
T 2e5p_A 23 GLLYLGTIKKVDSAREVCLVQFEDD-SQFLVLWKDISPAA 61 (68)
T ss_dssp SSEEEEEEEEEETTTTEEEEEETTT-EEEEEETTTEECCC
T ss_pred CcEEEeEEEEEecCCcEEEEEEccC-Ceeeeeeecccccc
Confidence 4567899999999999999998886 57889999998654
No 103
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=37.53 E-value=7 Score=35.70 Aligned_cols=58 Identities=28% Similarity=0.293 Sum_probs=0.0
Q ss_pred ccccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccCCc----ccCCCCCEEEEEEeeC-CCCc
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGF----RTLSEGQTVEFSVDVG-EDGR 64 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~~----~~l~~G~~V~F~~~~~-~kGr 64 (169)
...+.|+|+.. .-||....-..+.+-++|+|.|...-+ ..+++||.|...+..- ++++
T Consensus 638 G~v~~G~V~~I---~~fGaFVel~~g~eGLvHiSels~~rv~~~~d~~kvGD~V~VkVi~iD~~gr 700 (726)
T 4aid_A 638 GKIYDGKVVKV---VDFGAFVNFFGAKDGLVHVSQISNERVAKPSDVLKEGQMVKVKLLGFDDRGK 700 (726)
T ss_dssp ------------------------------------------------------------------
T ss_pred CcEEEEEEEEE---eccEEEEEECCCcEEEEEHHHcCcccccCccccCCCCCEEEEEEEEECCCCc
Confidence 45688999987 468865554445899999999976422 3588999998877654 3454
No 104
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=36.79 E-value=84 Score=23.99 Aligned_cols=53 Identities=13% Similarity=0.091 Sum_probs=32.7
Q ss_pred ccccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccCCc------------------ccCCCCCEEEEEEee
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGF------------------RTLSEGQTVEFSVDV 59 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~~------------------~~l~~G~~V~F~~~~ 59 (169)
.+.+.|+|+.-+ .|||...-++.-+=+||++++....+ ..++.|+.|.|.+..
T Consensus 82 GEv~~G~Is~Vt---~fGifVeL~g~~eglv~~s~l~~d~~~fd~~~~~~vg~~~e~t~~~~~~Gd~VrvrV~~ 152 (218)
T 2ckz_B 82 GEIVTGWISKCT---AEGIKVSLLGIFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRIER 152 (218)
T ss_dssp TCEEEEEEEEEE---TTEEEEECTTSCCCEEEETTTSCTTCEEETTTTEEEEECC--CEEEECTTCEEEEEEEE
T ss_pred CCEEEEEEEEEc---cCcEEEEccCccceEEEcHHHCCCCcEEcCcCceEEeeccccCCcEEcCCCEEEEEEEE
Confidence 356788998886 46766555333355678888754332 236667777766653
No 105
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=36.25 E-value=27 Score=22.19 Aligned_cols=21 Identities=24% Similarity=0.278 Sum_probs=14.7
Q ss_pred ceEEEEeeC---CCCeeEEecCCC
Q 030905 8 SGTVKWFSA---QKGFGFIAPEDG 28 (169)
Q Consensus 8 ~G~Vk~~~~---~kGfGFI~~~~~ 28 (169)
.|.|+.... .||||||+-++.
T Consensus 35 ~G~i~~v~i~~~srGfaFV~F~~~ 58 (89)
T 3d2w_A 35 YGEVVDVFIPKPFRAFAFVTFADD 58 (89)
T ss_dssp TSCEEEEECCSSCCSEEEEEESCH
T ss_pred cCCEEEEEEeeCCCCEEEEEECCH
Confidence 466665544 489999998764
No 106
>3e2u_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskelet associated protein, P150glued; 2.60A {Homo sapiens}
Probab=35.59 E-value=9.2 Score=21.95 Aligned_cols=17 Identities=35% Similarity=0.788 Sum_probs=11.2
Q ss_pred cccccCCCCccCCCCCC
Q 030905 152 GCYNCGEEGHFARDCPN 168 (169)
Q Consensus 152 ~C~~Cg~~GH~ardCp~ 168 (169)
-|=.|--.|||..+|+.
T Consensus 22 YCe~CEVFGH~t~eC~d 38 (42)
T 3e2u_E 22 YCEICEMFGHWATNCND 38 (42)
T ss_dssp EETTTTEESSCGGGCCT
T ss_pred ccccceecccccccCCc
Confidence 36677777777777753
No 107
>2ylb_A Protein HFQ; RNA-binding protein, LSM protein, RNA chaperone; 1.15A {Salmonella enterica subsp} PDB: 2yht_A 1hk9_A 2ylc_A* 3gib_A* 3rer_A* 3qo3_A* 3res_A*
Probab=34.81 E-value=37 Score=21.70 Aligned_cols=33 Identities=15% Similarity=0.252 Sum_probs=23.8
Q ss_pred ccccceEEEEeeCCCCeeEEecCCCCccEEEEeecccc
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKS 41 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~ 41 (169)
..+++|+|+|||. |=.+..++ ...++...||..
T Consensus 31 G~~l~G~I~~fD~---f~vlL~~~--~~~LIYKhAIsT 63 (74)
T 2ylb_A 31 GIKLQGQIESFDQ---FVILLKNT--VSQMVYKHAIST 63 (74)
T ss_dssp SCEEEEEEEEECS---SEEEEESS--SEEEEEGGGEEE
T ss_pred CCEEEEEEEEECC---cEEEEECC--ceEEEEeeeEEE
Confidence 4678999999985 55555543 678888877754
No 108
>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc binding, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.11.1
Probab=34.59 E-value=13 Score=22.56 Aligned_cols=10 Identities=30% Similarity=0.843 Sum_probs=7.3
Q ss_pred CccccccCCC
Q 030905 150 GGGCYNCGEE 159 (169)
Q Consensus 150 ~~~C~~Cg~~ 159 (169)
+..||.||+.
T Consensus 3 PVRCFTCGkv 12 (55)
T 1ef4_A 3 PVRCLSCGKP 12 (55)
T ss_dssp SSSCSCTTSC
T ss_pred CeecCCCCCC
Confidence 4568888875
No 109
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=33.39 E-value=97 Score=20.91 Aligned_cols=48 Identities=17% Similarity=0.209 Sum_probs=33.9
Q ss_pred ccccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccCCcccCCCCCEEEE
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEF 55 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~~~~l~~G~~V~F 55 (169)
.+..-|+|.....+.- +|....++..+||.++..... ..|++|++|..
T Consensus 36 ~P~~Vg~v~e~~d~~~--~iVk~s~g~~~~V~v~~~Vd~--~~LkpG~rVaL 83 (109)
T 2wg5_A 36 PPLLVGVVSDILEDGR--VVVKSSTGPKFVVNTSQYINE--EELKPGARVAL 83 (109)
T ss_dssp CCEEEEEEEEECTTSC--EEEEETTSCEEEECBCTTSCT--TTCCTTCEEEE
T ss_pred CCceEEEEEEEecCCE--EEEEeCCCCEEEEEcccccCH--HHCCCCCEEEE
Confidence 3556788777765443 444444457899999887765 57999999974
No 110
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=33.38 E-value=30 Score=22.93 Aligned_cols=23 Identities=13% Similarity=0.205 Sum_probs=16.3
Q ss_pred ccceEEEEee--CCCCeeEEecCCC
Q 030905 6 RSSGTVKWFS--AQKGFGFIAPEDG 28 (169)
Q Consensus 6 ~~~G~Vk~~~--~~kGfGFI~~~~~ 28 (169)
...|.|+.+. ..|||+||+-.+.
T Consensus 29 ~q~G~V~~~~l~~~kGfaFVey~~~ 53 (89)
T 2wbr_A 29 MQHGPLVSFHPYLNQGIALCKYTTR 53 (89)
T ss_dssp HHHSCEEEEEEETTTTEEEEEESSH
T ss_pred HhhCCEEEEEEcCCCcEEEEEECCH
Confidence 3456676654 5799999997653
No 111
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=32.09 E-value=1.5e+02 Score=21.82 Aligned_cols=54 Identities=13% Similarity=0.023 Sum_probs=38.4
Q ss_pred cccceEEEEeeCCCCeeEEecCCC-CccEEEEeeccccC---CcccCCCCCEEEEEEeeCC
Q 030905 5 QRSSGTVKWFSAQKGFGFIAPEDG-GEDLFVHQTSIKSE---GFRTLSEGQTVEFSVDVGE 61 (169)
Q Consensus 5 ~~~~G~Vk~~~~~kGfGFI~~~~~-~~dvF~H~s~i~~~---~~~~l~~G~~V~F~~~~~~ 61 (169)
..+.|+|+.-. .++++..-.. ..+.++|++++... -.+.|.+||.|.-++..-.
T Consensus 9 DvViG~V~~v~---~~~~~VdI~~~~~~a~L~~s~~~g~~k~~r~~l~~GDlV~ArV~~~~ 66 (175)
T 2ja9_A 9 DFVIGVIIGTF---SDSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYARVCTAE 66 (175)
T ss_dssp CEEEEEEEEEC---SSEEEEESSTTSCCEEEETTSSTTCCSSSCCCCCTTCEEEEEEEECC
T ss_pred CEEEEEEEEEE---CcEEEEEECCCCccEEEEHHHCCchhhhhhccCCCCCEEEEEEEEec
Confidence 45678887763 3455555445 57999999999732 2457999999998887654
No 112
>4ayb_N DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_N 2y0s_N 2waq_N 4b1o_N 4b1p_O 2pmz_N 3hkz_N
Probab=31.88 E-value=15 Score=23.22 Aligned_cols=10 Identities=30% Similarity=0.850 Sum_probs=7.1
Q ss_pred CccccccCCC
Q 030905 150 GGGCYNCGEE 159 (169)
Q Consensus 150 ~~~C~~Cg~~ 159 (169)
+.+||.||+.
T Consensus 4 PVRCFTCGkv 13 (66)
T 4ayb_N 4 PIRCFTCGSL 13 (66)
T ss_dssp CSBCTTTCCB
T ss_pred CcccCCCcHh
Confidence 4568888875
No 113
>2y90_A Protein HFQ; RNA-binding protein, SM-like, RNA chaperone; 2.25A {Escherichia coli} PDB: 3qhs_A
Probab=31.74 E-value=42 Score=23.00 Aligned_cols=33 Identities=15% Similarity=0.252 Sum_probs=24.6
Q ss_pred ccccceEEEEeeCCCCeeEEecCCCCccEEEEeecccc
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKS 41 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~ 41 (169)
..+++|+|+|||. |=.+..++ ...+|...+|..
T Consensus 31 G~~L~G~I~~fD~---f~VlL~~~--kqqLIYKHAIST 63 (104)
T 2y90_A 31 GIKLQGQIESFDQ---FVILLKNT--VSQMVYKHAIST 63 (104)
T ss_dssp SCEEEEEEEEECS---SEEEEESS--SEEEEEGGGEEE
T ss_pred CCEEEEEEEEECC---cEEEEECC--ceEEEEeeeeEE
Confidence 4578999999985 66666644 678888877754
No 114
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=30.75 E-value=1.5e+02 Score=22.13 Aligned_cols=52 Identities=12% Similarity=0.029 Sum_probs=33.4
Q ss_pred ccccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccCCc-----------------------ccCCCCCEEEEEEee
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGF-----------------------RTLSEGQTVEFSVDV 59 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~~-----------------------~~l~~G~~V~F~~~~ 59 (169)
.+.+.|+|+.-+ .|||...-+ .-+=.||.+++....+ ..++.|+.|.|.+..
T Consensus 82 GEv~~G~Vs~vt---~~GifV~lg-~~eglv~~~~l~~d~~~fd~~~~~~v~~~~~~~~~~~~~~~~~~Gd~VrvrV~~ 156 (203)
T 3ayh_B 82 GEVMLGKIKSCS---EEGIRVTIS-FFDDIFIPKDMLFDPCVFRPDERAWVWKIEGEDGSEGTELYFDIDEEIRFQIES 156 (203)
T ss_dssp TCEEEEEEEEEE---TTEEEEECS-SCCCEEEEGGGBCTTEEEEGGGTEEEEEECCCTTSCCEEEECCTTCEEEEEEEE
T ss_pred CCEEEEEEEEEe---ccEEEEEEe-CceEEEEcHHhCCCCceECccCceEEeecccccccccCCcEEcCCCEEEEEEEE
Confidence 356789999887 467666554 3344578877754321 247788888877764
No 115
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=29.46 E-value=1.1e+02 Score=22.87 Aligned_cols=45 Identities=40% Similarity=0.645 Sum_probs=28.8
Q ss_pred cceEEEEeeCC-CCeeEEecCCCCccEEEEe--e--ccccCCcc-cCCCCCEE
Q 030905 7 SSGTVKWFSAQ-KGFGFIAPEDGGEDLFVHQ--T--SIKSEGFR-TLSEGQTV 53 (169)
Q Consensus 7 ~~G~Vk~~~~~-kGfGFI~~~~~~~dvF~H~--s--~i~~~~~~-~l~~G~~V 53 (169)
..|+|....+. .-||+.+ ++ +-+|.+|+ . .|...+|. .+++||.|
T Consensus 78 ~dG~V~~vfpT~HAigi~s-~~-G~EvLIHIGiDTV~L~G~gF~~~V~~Gd~V 128 (183)
T 3our_B 78 VNGTIGKIFETNHAFSIES-DD-GVELFVHFGIDTVELKGEGFTRIAEEGQTV 128 (183)
T ss_dssp SSEEEEEECTTSSEEEEEE-TT-SCEEEEECSBSGGGGTTTTEEECSCTTCEE
T ss_pred CCeEEEEECCCCCEEEEEe-CC-CCEEEEEecccccccCCccceEEEeCcCEE
Confidence 46888877664 4577655 44 36899996 3 34555564 45567766
No 116
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.97 E-value=30 Score=22.08 Aligned_cols=20 Identities=15% Similarity=0.391 Sum_probs=16.9
Q ss_pred eEEEEeeCCCCeeEEecCCC
Q 030905 9 GTVKWFSAQKGFGFIAPEDG 28 (169)
Q Consensus 9 G~Vk~~~~~kGfGFI~~~~~ 28 (169)
|.|+.....++|+||+-.+.
T Consensus 42 g~v~~~~~~~g~afV~f~~~ 61 (99)
T 2cpd_A 42 GAVERVKKIRDYAFVHFSNR 61 (99)
T ss_dssp TCEEEEEECSSEEEEEESSH
T ss_pred cceEEEEEeCCeEEEEeCCH
Confidence 78888888899999987653
No 117
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=28.94 E-value=41 Score=27.58 Aligned_cols=34 Identities=18% Similarity=0.147 Sum_probs=22.9
Q ss_pred ccceEEEEeeCCCCeeE-EecCC--CCccEEEEeecc
Q 030905 6 RSSGTVKWFSAQKGFGF-IAPED--GGEDLFVHQTSI 39 (169)
Q Consensus 6 ~~~G~Vk~~~~~kGfGF-I~~~~--~~~dvF~H~s~i 39 (169)
...|+|.+-....+||- |..+. +-.-+|.|.+.+
T Consensus 248 ~~~G~V~~~~~~~~~G~~v~i~h~~g~~t~Y~hl~~~ 284 (361)
T 2gu1_A 248 TGDGKVIVVRKHPYAGNYLVIEHNSVYKTRYLHLDKI 284 (361)
T ss_dssp SSSEEEEEEEEETTTEEEEEEECSSSEEEEEEEESEE
T ss_pred eeCEEEEEeEEeCCCCeEEEEEECCCEEEEEeCcCcc
Confidence 35689988777788984 33332 234578998876
No 118
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=28.87 E-value=1.1e+02 Score=19.40 Aligned_cols=21 Identities=14% Similarity=0.287 Sum_probs=14.7
Q ss_pred ccceEEEEeeCCCCeeEEecC
Q 030905 6 RSSGTVKWFSAQKGFGFIAPE 26 (169)
Q Consensus 6 ~~~G~Vk~~~~~kGfGFI~~~ 26 (169)
..-|.|..|+.+.++-.|+..
T Consensus 7 ~fvG~V~~~~~~~g~~~ie~r 27 (89)
T 4he6_A 7 EFAGLVLGYDPETGIATVQQR 27 (89)
T ss_dssp GCSEEEEEEETTTTEEEEEES
T ss_pred EEEEEEEEEeCCCCEEEEEEc
Confidence 456888888877776666544
No 119
>1kq1_A HFQ, HOST factor for Q beta; hexamer, RNA binding protein, translational regulator, SM motif; 1.55A {Staphylococcus aureus} SCOP: b.38.1.2 PDB: 1kq2_A
Probab=28.86 E-value=41 Score=21.67 Aligned_cols=34 Identities=9% Similarity=0.225 Sum_probs=24.4
Q ss_pred ccccceEEEEeeCCCCeeEEecCCCCccEEEEeecccc
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKS 41 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~ 41 (169)
..+++|+|+|||. |=.+...++ ...++...||..
T Consensus 29 G~~l~G~I~~fD~---f~VlL~~~g-~~qLIYKhAIST 62 (77)
T 1kq1_A 29 GFQMKGVIEEYDK---YVVSLNSQG-KQHLIYKHAIST 62 (77)
T ss_dssp SCEEEEEEEEECS---SEEEEEETT-EEEEEEGGGEEE
T ss_pred CCEEEEEEEEECC---cEEEEEECC-eeEEEEeeeEEE
Confidence 4678999999985 666665544 567777777753
No 120
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=28.82 E-value=1.2e+02 Score=19.57 Aligned_cols=38 Identities=18% Similarity=0.184 Sum_probs=31.7
Q ss_pred ccccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccC
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSE 42 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~ 42 (169)
..-+-|+|+.-+..+..=||.-+|. .+.+++..+|+..
T Consensus 40 GlfYLGTI~kV~~~~e~ClV~F~D~-S~~W~~~kdi~~~ 77 (79)
T 2m0o_A 40 GLLYLGTIKKVDSAREVCLVQFEDD-SQFLVLWKDISPA 77 (79)
T ss_dssp SCCCEEEEEEEETTTTEEEEEETTS-CEEEEETTTBCCC
T ss_pred CCEEeEEEEEeccCCCEEEEEEcCC-CeEEEEeeccccc
Confidence 4567899999999999999998886 4788888888754
No 121
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=28.70 E-value=31 Score=22.13 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=17.3
Q ss_pred cceEEEEeeCCCCeeEEecCCC
Q 030905 7 SSGTVKWFSAQKGFGFIAPEDG 28 (169)
Q Consensus 7 ~~G~Vk~~~~~kGfGFI~~~~~ 28 (169)
..|.|+.....+||+||+-.+.
T Consensus 46 ~~G~v~~v~i~~g~afV~f~~~ 67 (97)
T 2xnq_A 46 PYGHIMQINIKNAFGFIQFDNP 67 (97)
T ss_dssp GGSCEEEEEECSSEEEEEESSH
T ss_pred hcCCEEEEEEeCCEEEEEECCH
Confidence 4577888777899999997653
No 122
>3nyy_A Putative glycyl-glycine endopeptidase LYTM; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE 2PE SO4; 1.60A {Ruminococcus gnavus}
Probab=27.47 E-value=68 Score=25.08 Aligned_cols=34 Identities=18% Similarity=0.083 Sum_probs=22.6
Q ss_pred ccceEEEEeeCCCCeeEEe-cC--CCCccEEEEeecc
Q 030905 6 RSSGTVKWFSAQKGFGFIA-PE--DGGEDLFVHQTSI 39 (169)
Q Consensus 6 ~~~G~Vk~~~~~kGfGFI~-~~--~~~~dvF~H~s~i 39 (169)
...|+|..-....+||... .+ ++-.-+|.|.+.+
T Consensus 145 ~~~G~V~~~g~~~~~G~~V~I~H~~G~~t~Y~HL~~~ 181 (252)
T 3nyy_A 145 MTDGVVTEKGWLEKGGWRIGITAPTGAYFYYAHLDSY 181 (252)
T ss_dssp SSCEEEEEEEEETTTEEEEEEECTTSCEEEEEEESEE
T ss_pred ccCEEEEEEEecCCCCCEEEEEeCCcEEEEEeeCCCC
Confidence 4568888776667788432 22 3334688999887
No 123
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=27.31 E-value=1.4e+02 Score=20.59 Aligned_cols=49 Identities=20% Similarity=0.253 Sum_probs=36.8
Q ss_pred ceEEEEeeCCCCeeEEecCCCCccEE-------EEeeccccCCcccCCCCCEEEEEEeeC
Q 030905 8 SGTVKWFSAQKGFGFIAPEDGGEDLF-------VHQTSIKSEGFRTLSEGQTVEFSVDVG 60 (169)
Q Consensus 8 ~G~Vk~~~~~kGfGFI~~~~~~~dvF-------~H~s~i~~~~~~~l~~G~~V~F~~~~~ 60 (169)
...-..|+.-+-|=|+..+..++.|| |-+ ++. ...|.+|+.++|+++.+
T Consensus 32 ~~v~l~f~Sgq~~Df~v~d~~G~~VwrwS~~~~FtQ-a~~---~~tl~pGE~~~f~~~w~ 87 (120)
T 3isy_A 32 RAIEFQFSTGQKFELVVYDSEHKERYRYSKEKMFTQ-AFQ---NLTLESGETYDFSDVWK 87 (120)
T ss_dssp SCEEEEESSSCCEEEEEECTTCCEEEETTTTCCCCC-CCE---EEEECTTCEEEEEEEES
T ss_pred CcEEEEeCCCCEEEEEEECCCCCEEEEccccchhhh-hhc---eEEECCCCEEEEEEEeC
Confidence 34556788899999999986567777 222 333 36799999999999987
No 124
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}
Probab=27.15 E-value=60 Score=19.79 Aligned_cols=39 Identities=28% Similarity=0.577 Sum_probs=26.4
Q ss_pred CCCCc-cccCcC-------CeecccCCCCCCCCCCCCCCCCCCccccccCCCC-------ccCCCCCC
Q 030905 116 GSGAC-FNCGRT-------GHIARECYSRGRGGGRGYGGGRGGGGCYNCGEEG-------HFARDCPN 168 (169)
Q Consensus 116 ~~~~C-~~Cg~~-------GH~a~~C~~~~~~~~~~~~g~~~~~~C~~Cg~~G-------H~ardCp~ 168 (169)
....| ..|+.. -|...+||.. ...|-.|...- |. .+||.
T Consensus 15 ~~v~C~~~C~~~v~r~~l~~H~~~~C~~r-------------~v~C~~C~~~~~~~~l~~H~-~~Cp~ 68 (76)
T 2yuc_A 15 NVIPCPNRCPMKLSRRDLPAHLQHDCPKR-------------RLKCEFCGCDFSGEAYESHE-GMCPQ 68 (76)
T ss_dssp SCCBCTTCCSCBCCSSSSTTTTTTSCTTS-------------CCCCSSSCCCCCHHHHHHTT-TSCTT
T ss_pred cccCCCccccHHhhHhHHHhhCHhhCCCc-------------ceECCCCCCccCHHHHHHHH-hHCCC
Confidence 34567 567533 5777788874 56788888776 77 56775
No 125
>3fkh_A Putative pyridoxamine 5'-phosphate oxidase; NP_601736.1, STR genomics, joint center for structural genomics, JCSG; HET: P33; 2.51A {Corynebacterium glutamicum atcc 13032}
Probab=27.00 E-value=62 Score=22.69 Aligned_cols=51 Identities=16% Similarity=0.125 Sum_probs=29.5
Q ss_pred ccceEEEEeeCCCCeeEEecCC---CCccEEEEeeccccCCcccCCCCCEEEEEEeeC
Q 030905 6 RSSGTVKWFSAQKGFGFIAPED---GGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVG 60 (169)
Q Consensus 6 ~~~G~Vk~~~~~kGfGFI~~~~---~~~dvF~H~s~i~~~~~~~l~~G~~V~F~~~~~ 60 (169)
...|+|..-+ .|+=+|.|-. .+..||||-+. ..-+..|..+.+|.|++...
T Consensus 21 ~~~g~La~~~--dg~P~vvPv~f~~~~~~iyfh~a~--g~K~~~i~~~~~V~f~vd~~ 74 (138)
T 3fkh_A 21 VSLGRVVVRR--SDEMDIFPVNFIVDKGAIYIRTAE--GNKLFSMNLNHDVLFEADEV 74 (138)
T ss_dssp CSEEEEEEEE--TTEEEEEEEEEEEETTEEEEEEEC----------CCSEEEEEEEEE
T ss_pred CCEEEEEEee--CCEEEEEEEEEEEECCEEEEEeCC--ChHHHHhhcCCCEEEEEEEC
Confidence 3457776654 5666666521 12579999875 33456788999999999864
No 126
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=26.80 E-value=67 Score=20.82 Aligned_cols=47 Identities=17% Similarity=0.141 Sum_probs=32.5
Q ss_pred ccccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccCCcccCCCCCEEE
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVE 54 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~~~~l~~G~~V~ 54 (169)
....-|+|..-.++ ....|.... +..+|+-++.+.+. ..|++|++|.
T Consensus 17 ~P~~vG~v~e~~dd-~~~iVkss~-g~~~~V~v~~~Vd~--~~LkpG~rVa 63 (85)
T 3h43_A 17 PPLIVGTVVDKVGE-RKVVVKSST-GPSFLVNVSHFVNP--DDLAPGKRVC 63 (85)
T ss_dssp CCEEEEEEEEEEET-TEEEEEETT-SSEEEEEBCTTSCG--GGCCTTCEEE
T ss_pred CCceEEEEEEEcCC-CEEEEEeCC-CCeEEEEecCccCH--HHCCCCCEEE
Confidence 34566777776543 344444343 47899999988764 6799999996
No 127
>1hr0_W Translation initiation factor; ribosomal subunit, ribosome, IF1; 3.20A {Escherichia coli} SCOP: b.40.4.5 PDB: 1zo1_W
Probab=24.81 E-value=27 Score=21.80 Aligned_cols=54 Identities=11% Similarity=0.113 Sum_probs=31.8
Q ss_pred ccccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccCCcccCCCCCEEEEEEee
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDV 59 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~~~~l~~G~~V~F~~~~ 59 (169)
..++.|+|.+--.. +|=.+..+++ ..+-.|++---......+.+||.|.+++.+
T Consensus 6 ~~~~~G~Vi~~lg~-~~y~V~~~~g-~~~~~~i~Gk~Rk~~i~i~~GD~V~ve~~~ 59 (71)
T 1hr0_W 6 TIRTEGVVTEALPN-ATFRVKLDSG-PEILAYISGKMRMHYIRILPGDRVVVEITP 59 (71)
T ss_dssp CCCCEEECCCCCTT-TBCCCEESSS-CBCCCEECHHHHHTCCCCCTTCEEEEECCT
T ss_pred ceEEEEEEEEEeCC-cEEEEEECCC-CEEEEEEcceEeccCcCCCCCCEEEEEEEc
Confidence 34567888754332 2223333443 456677765544323457799999999874
No 128
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=24.55 E-value=1.5e+02 Score=21.38 Aligned_cols=28 Identities=25% Similarity=0.430 Sum_probs=18.2
Q ss_pred cceEEEEeeCCC-CeeEEecCCCCccEEEEe
Q 030905 7 SSGTVKWFSAQK-GFGFIAPEDGGEDLFVHQ 36 (169)
Q Consensus 7 ~~G~Vk~~~~~k-GfGFI~~~~~~~dvF~H~ 36 (169)
..|+|....+.+ -||+- .++ +.+|.+|+
T Consensus 51 ~~G~V~~v~~t~HAigi~-~~~-G~evLiHi 79 (154)
T 2gpr_A 51 VSGKLVTAFPTKHAFGIQ-TKS-GVEILLHI 79 (154)
T ss_dssp SCEEEEECCTTCSEEEEE-CTT-SCEEEEEC
T ss_pred CCeEEEEEccCCeEEEEE-cCC-CCEEEEEE
Confidence 468998765544 45543 344 46899996
No 129
>1fr3_A MOP, molybdate/tungstate binding protein; molybdate homeostasis, metal binding protein; 1.50A {Sporomusa ovata} SCOP: b.40.6.1
Probab=24.04 E-value=91 Score=18.08 Aligned_cols=53 Identities=21% Similarity=0.122 Sum_probs=30.6
Q ss_pred cccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccCCcccCCCCCEEEEEEe
Q 030905 5 QRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVD 58 (169)
Q Consensus 5 ~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~~~~l~~G~~V~F~~~ 58 (169)
....|+|+........=-|..+-++..+...++.-.... ..|++|+.|...+.
T Consensus 7 N~l~g~V~~i~~~g~~~~v~l~~~~~~l~a~it~~s~~~-l~L~~G~~V~~~ik 59 (67)
T 1fr3_A 7 NKLEATVKEIVKGTVMAKIVMDYKGTELVAAITIDSVAD-LDLVPGDKVTALVK 59 (67)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEETTEEEEEEEEHHHHHH-HTCCTTCEEEEEEC
T ss_pred eEEEEEEEEEEeCCceEEEEEEeCCCEEEEEeCHHHHHh-CCCCCCCEEEEEEe
Confidence 468899999876444444444322224444443222111 35899999988774
No 130
>1qwy_A Peptidoglycan hydrolase; LYTM lysostaphin metalloprotease asparagine switch; 1.30A {Staphylococcus aureus subsp} SCOP: b.84.3.2 PDB: 2b0p_A 2b13_A* 2b44_A
Probab=24.02 E-value=60 Score=26.20 Aligned_cols=42 Identities=21% Similarity=0.345 Sum_probs=25.1
Q ss_pred ccceEEEEeeCCC-CeeE-EecCCC---CccEEEEeeccccCCcccCCCCCEE
Q 030905 6 RSSGTVKWFSAQK-GFGF-IAPEDG---GEDLFVHQTSIKSEGFRTLSEGQTV 53 (169)
Q Consensus 6 ~~~G~Vk~~~~~k-GfGF-I~~~~~---~~dvF~H~s~i~~~~~~~l~~G~~V 53 (169)
...|+|..-.... +||- |..+.. -.-+|.|.+.+. +++||.|
T Consensus 201 ~adG~Vv~ag~~~~g~Gn~ViI~H~~g~~~T~YaHLs~i~------Vk~Gq~V 247 (291)
T 1qwy_A 201 LTDGTVVQAGWSNYGGGNQVTIKEANSNNYQWYMHNNRLT------VSAGDKV 247 (291)
T ss_dssp SSSEEEEEEEEETTTTEEEEEEEETTSSEEEEEEEESEEC------CCTTCEE
T ss_pred CcCeEEEEEEEecCCCCeEEEEEECCCCEEEEEEcCCccc------cCCcCEE
Confidence 3568888765544 7883 333322 235789988763 4566655
No 131
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}
Probab=24.00 E-value=91 Score=19.03 Aligned_cols=44 Identities=23% Similarity=0.385 Sum_probs=24.5
Q ss_pred EEeeCCCCeeEEecCCCCccEEEEeeccccCCc---cc-CCCCCEEEE
Q 030905 12 KWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGF---RT-LSEGQTVEF 55 (169)
Q Consensus 12 k~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~~---~~-l~~G~~V~F 55 (169)
.......+|||........+..+.+..+...+. .- |++||.|.-
T Consensus 5 ~l~k~~~g~G~~i~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~ 52 (85)
T 2i04_A 5 KLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVS 52 (85)
T ss_dssp EEECBTTBSSEEEEECCSTTBCEEEEEECTTSHHHHHCCCCTTCEEEE
T ss_pred EEEECCCCCCEEEEcccCCCCCEEEEEECCCChHHHcCCCCCCCEEEE
Confidence 333456789998754222233344555544331 13 889999853
No 132
>1gut_A Mopii, molybdate binding protein II; transport protein; 1.50A {Clostridium pasteurianum} SCOP: b.40.6.1 PDB: 1gun_A 1guo_A 1gus_A 1gug_A
Probab=23.79 E-value=1.1e+02 Score=18.01 Aligned_cols=53 Identities=17% Similarity=0.111 Sum_probs=31.6
Q ss_pred cccceEEEEeeCCCCeeEEecC-CCCccEEEEeeccccCCcccCCCCCEEEEEEe
Q 030905 5 QRSSGTVKWFSAQKGFGFIAPE-DGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVD 58 (169)
Q Consensus 5 ~~~~G~Vk~~~~~kGfGFI~~~-~~~~dvF~H~s~i~~~~~~~l~~G~~V~F~~~ 58 (169)
....|+|+........=-|..+ .++..+...++.-.... -.|++|++|...+.
T Consensus 7 N~l~g~V~~i~~~g~~~~V~l~~~~g~~l~a~it~~s~~~-l~L~~G~~V~a~ik 60 (68)
T 1gut_A 7 NQLKGKVVGLKKGVVTAEVVLEIAGGNKITSIISLDSVEE-LGVKEGAELTAVVK 60 (68)
T ss_dssp CEEEEEEEEEEECSSEEEEEEEETTSCEEEEEEEHHHHHH-HTCCTTCEEEEECC
T ss_pred eEEEEEEEEEEeCCceEEEEEEeCCCCEEEEEeCHHHHHH-CCCCCCCEEEEEEe
Confidence 4688999998765444444443 22345655554322111 34899999987764
No 133
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=23.72 E-value=17 Score=34.56 Aligned_cols=54 Identities=13% Similarity=-0.032 Sum_probs=0.0
Q ss_pred ccccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccCC-----cccCCCCCEEEEEEeeC
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG-----FRTLSEGQTVEFSVDVG 60 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~-----~~~l~~G~~V~F~~~~~ 60 (169)
.+.+.|+|+.. .-||....-+.+.+=+||+|.|...- ...+++||.|...|..-
T Consensus 906 G~iv~G~V~~V---~~fGaFV~L~~gveGLVHiSelsd~~~v~~~~~v~kvGd~V~vkVl~V 964 (1030)
T 3psf_A 906 GSIIPVRVERF---WHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYI 964 (1030)
T ss_dssp --------------------------------------------------------------
T ss_pred CCEEEEEEEEE---ccCeEEEEeCCCcEEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEE
Confidence 46789999976 35775554444579999999997642 13488999998877654
No 134
>3slu_A M23 peptidase domain protein; outer membrane, hydrolase; 2.41A {Neisseria meningitidis}
Probab=23.18 E-value=64 Score=26.76 Aligned_cols=50 Identities=18% Similarity=0.432 Sum_probs=34.8
Q ss_pred ccceEEEEeeCCCCeeEEe-cCC--CCccEEEEeeccccCCcccCCCCCEEEEE
Q 030905 6 RSSGTVKWFSAQKGFGFIA-PED--GGEDLFVHQTSIKSEGFRTLSEGQTVEFS 56 (169)
Q Consensus 6 ~~~G~Vk~~~~~kGfGFI~-~~~--~~~dvF~H~s~i~~~~~~~l~~G~~V~F~ 56 (169)
...|+|..-....+||-.. .+. +-.-+|.|.+.+...+ ..++.||.|-+.
T Consensus 262 ~~~G~V~~~~~~~g~G~~V~I~H~~g~~t~Y~HL~~~v~~G-~~V~~Gq~IG~v 314 (371)
T 3slu_A 262 SADGVITFKGRKGGYGNAVMIRHANGVETLYAHLSAFSQAQ-GNVRGGEVIGFV 314 (371)
T ss_dssp SSSSBEEEEEECGGGCEEEEEECSTTEEEEEEEESBCCCCC-SBCCSSSEEEEC
T ss_pred cCCeEEEEEEecCCCccEEEEEECCcEEEEEecCcccCCCc-CEECCCCEEEEe
Confidence 3568898888888988433 332 2346899999986665 458888887654
No 135
>3hfo_A SSR3341 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 1.30A {Synechocystis SP}
Probab=23.10 E-value=99 Score=19.51 Aligned_cols=34 Identities=15% Similarity=0.189 Sum_probs=22.2
Q ss_pred ccccceEEEEeeCCCCeeEEecCCCCccEEEEeeccc
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIK 40 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~ 40 (169)
....+|+|.|+|+. |=-+..++ +..+.++..+|.
T Consensus 31 G~~l~G~i~WQD~~--cl~L~~~~-~~~~LI~r~AI~ 64 (70)
T 3hfo_A 31 GDSLFGTIRWQDTD--GLGLVDDS-ERSTIVRLAAIA 64 (70)
T ss_dssp SCEEEEEEEEECSS--EEEEECTT-CCEEEEEGGGEE
T ss_pred CCEEEEEEEEeCCC--EEEEEcCC-CCeEEEEeeeeE
Confidence 45789999999873 22233333 456888877775
No 136
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=22.81 E-value=2.2e+02 Score=21.30 Aligned_cols=56 Identities=9% Similarity=0.046 Sum_probs=35.4
Q ss_pred ccccceEEEEeeCCCCeeEEecC-------CCCccEEEEeeccccCC------cccCCCCCEEEEEEeeCC
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAPE-------DGGEDLFVHQTSIKSEG------FRTLSEGQTVEFSVDVGE 61 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~~-------~~~~dvF~H~s~i~~~~------~~~l~~G~~V~F~~~~~~ 61 (169)
...+.|+|+...+ -.-|+... ...-+=++|++++...- ...|++||.|...+..-.
T Consensus 82 GDvV~G~V~~v~~--~~a~V~I~~v~~~~L~~~~~GlIhisei~~~~~~~~~~~~~l~~GD~V~akVisi~ 150 (209)
T 2nn6_I 82 GAIVTCKVSSINS--RFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLG 150 (209)
T ss_dssp TCEEEEEEEEECS--SEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGTCCSSSEEEEEEEEEE
T ss_pred CCEEEEEEEEEEC--ceEEEEECccccccccCCceeEEEHHHcccccccccchhhhcCCCCEEEEEEEEEe
Confidence 3467888988854 22344421 12245679999997532 123899999998876543
No 137
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=22.66 E-value=1.8e+02 Score=21.17 Aligned_cols=28 Identities=29% Similarity=0.490 Sum_probs=18.1
Q ss_pred cceEEEEeeCCC-CeeEEecCCCCccEEEEe
Q 030905 7 SSGTVKWFSAQK-GFGFIAPEDGGEDLFVHQ 36 (169)
Q Consensus 7 ~~G~Vk~~~~~k-GfGFI~~~~~~~dvF~H~ 36 (169)
..|+|....+.+ -||+- .+++ .+|.+|+
T Consensus 56 ~~G~V~~v~~t~hAigi~-t~~G-~evLiHi 84 (161)
T 1f3z_A 56 VDGTIGKIFETNHAFSIE-SDSG-VELFVHF 84 (161)
T ss_dssp SSEEEEEECTTSSEEEEE-ETTS-CEEEEEC
T ss_pred CCeEEEEEccCCeEEEEE-eCCC-CEEEEEE
Confidence 468888765544 45544 4443 6899996
No 138
>3sb2_A Protein HFQ; SM-like, RNA chaperone, chaperone; 2.63A {Herbaspirillum seropedicae} SCOP: b.38.1.2
Probab=22.61 E-value=33 Score=22.33 Aligned_cols=33 Identities=15% Similarity=0.218 Sum_probs=22.8
Q ss_pred ccccceEEEEeeCCCCeeEEecCCCCccEEEEeecccc
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKS 41 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~ 41 (169)
..+++|+|+|||. |=.+.. ++ ...++...||..
T Consensus 30 G~~L~G~I~~fD~---f~VlL~-~g-~~qLIYKhAIST 62 (79)
T 3sb2_A 30 GIKLQGHVESFDQ---YVVLLR-NT-VTQMVYKHAIST 62 (79)
T ss_dssp SCEEEEEEEEECS---SEEEEE-SS-SEEEEEGGGEEE
T ss_pred CCEEEEEEEEECC---cEEEEE-CC-ceEEEEeeeEEE
Confidence 4578999999985 665554 33 566777777653
No 139
>3tuf_B Stage II sporulation protein Q; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_B
Probab=22.16 E-value=71 Score=24.95 Aligned_cols=35 Identities=20% Similarity=0.316 Sum_probs=23.2
Q ss_pred ccceEEEEeeCCCCeeEEec-CC--CCccEEEEeeccc
Q 030905 6 RSSGTVKWFSAQKGFGFIAP-ED--GGEDLFVHQTSIK 40 (169)
Q Consensus 6 ~~~G~Vk~~~~~kGfGFI~~-~~--~~~dvF~H~s~i~ 40 (169)
...|+|.......+||.+.. +. +-.-+|.|++.|.
T Consensus 99 ~~~G~V~~~g~~~~~G~~ViI~Hg~G~~t~Y~HL~~i~ 136 (245)
T 3tuf_B 99 SLSGTVVKAEKDPVLGYVVEVEHADGLSTVYQSLSEVS 136 (245)
T ss_dssp SSCEEEEEEEEETTTEEEEEEECSTTEEEEEEEESEES
T ss_pred CcCeEEEEEEecCCCceEEEEEeCCCEEEEEecCCccc
Confidence 35789988877778886433 32 2235788988764
No 140
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=22.10 E-value=1.4e+02 Score=21.70 Aligned_cols=45 Identities=29% Similarity=0.566 Sum_probs=25.7
Q ss_pred cceEEEEeeC-CCCeeEEecCCCCccEEEEee----ccccCCcc-cCCCCCEE
Q 030905 7 SSGTVKWFSA-QKGFGFIAPEDGGEDLFVHQT----SIKSEGFR-TLSEGQTV 53 (169)
Q Consensus 7 ~~G~Vk~~~~-~kGfGFI~~~~~~~dvF~H~s----~i~~~~~~-~l~~G~~V 53 (169)
..|+|+...+ ..-||+-+ ++ +.+|.+|+- .|...+|. .+++||.|
T Consensus 56 ~~G~V~~v~~t~hAigi~t-~~-G~evLiHIGidTV~l~G~gF~~~V~~Gd~V 106 (162)
T 1ax3_A 56 VRGKILNVFPTKHAIGLQS-DG-GREILIHFGIDTVSLKGEGFTSFVSEGDRV 106 (162)
T ss_dssp CCEEEEECCSSSSEEEEES-SS-SCEEEEECSSSTTTTTTTTEEESCCCCSEE
T ss_pred CCeEEEEEccCCeEEEEEc-CC-CCEEEEEECccchhcCCCccEEEEeCCCEE
Confidence 4688887544 44555443 44 468999972 22223343 45566666
No 141
>3mxn_B RECQ-mediated genome instability protein 2; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_B 3nbh_B
Probab=22.07 E-value=1.9e+02 Score=20.93 Aligned_cols=66 Identities=18% Similarity=0.114 Sum_probs=39.3
Q ss_pred ccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccC--CcccCCCCCEEEEEEee---CCCCceeEEEEEcCCCcc
Q 030905 6 RSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSE--GFRTLSEGQTVEFSVDV---GEDGRTKAVDVEAASRSR 77 (169)
Q Consensus 6 ~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~--~~~~l~~G~~V~F~~~~---~~kGr~~A~~V~~~~g~~ 77 (169)
-++|+|.+- +.+. |+..|.++ + |++..+... +...+++|+-|-..-.. .+.=.++|++|+-+...|
T Consensus 62 WmQG~VV~~--~~g~-~~LdDgTG--~-~~v~g~~~vp~g~p~l~~G~YVMV~G~v~~~s~eP~i~AvKm~DLS~~p 132 (150)
T 3mxn_B 62 WMQGRVVMA--DRGE-ARLRDPSG--D-FSVRGLERVPRGRPCLVPGKYVMVMGVVQACSPEPCLQAVKMTDLSDNP 132 (150)
T ss_dssp EEEEEEEEE--ETTE-EEEEETTE--E-EEEECGGGSCCCSCCCSTTCEEEEEEEEEECSSSCEEEEEEEEECCSCH
T ss_pred EEEeEEEEe--CCCe-EEEECCCc--e-EEEeeccccCCCCcccCCCCEEEEEEEEEecCCCceEEEEEeeeCCCCc
Confidence 378999994 5566 77766654 4 445444432 22347899988764332 223336788887665443
No 142
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.93 E-value=40 Score=20.95 Aligned_cols=21 Identities=33% Similarity=0.446 Sum_probs=15.7
Q ss_pred ceEEEEeeCCCCeeEEecCCC
Q 030905 8 SGTVKWFSAQKGFGFIAPEDG 28 (169)
Q Consensus 8 ~G~Vk~~~~~kGfGFI~~~~~ 28 (169)
.|.|+.....++|+||+-.+.
T Consensus 32 ~G~i~~v~~~~g~afV~f~~~ 52 (90)
T 2dnq_A 32 YGKVLECDIIKNYGFVHIEDK 52 (90)
T ss_dssp SSCEEEEEEETTEEEEEESSH
T ss_pred CCCEEEEEEECCEEEEEECCH
Confidence 467777666799999987653
No 143
>1u1s_A HFQ protein; SM-like bacterial protein, riken structural genomics/proteomics initiative, RSGI, structural genomics, RNA binding protein; 1.60A {Pseudomonas aeruginosa} SCOP: b.38.1.2 PDB: 1u1t_A 3qui_A* 3m4g_A 3inz_A
Probab=21.04 E-value=97 Score=20.19 Aligned_cols=33 Identities=15% Similarity=0.252 Sum_probs=23.9
Q ss_pred ccccceEEEEeeCCCCeeEEecCCCCccEEEEeecccc
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKS 41 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~ 41 (169)
..+++|+|+|||. |=.+..++ ...++...+|..
T Consensus 29 G~~l~G~I~~fD~---ftVlL~~~--~qqLVYKHAIST 61 (82)
T 1u1s_A 29 GIKLQGQIESFDQ---FVILLKNT--VSQMVYKHAIST 61 (82)
T ss_dssp SCEEEEEEEEECS---SEEEEESS--SCEEEEGGGEEE
T ss_pred CcEEEEEEEEEcc---eEEEEecC--ceEEEEeeeeEE
Confidence 4578999999984 66666543 567777777754
No 144
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=21.03 E-value=1e+02 Score=20.58 Aligned_cols=45 Identities=20% Similarity=0.403 Sum_probs=23.9
Q ss_pred EEEeeCCCCeeEEecCCCCccEEEEeeccccCC--c-cc-CCCCCEEEE
Q 030905 11 VKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG--F-RT-LSEGQTVEF 55 (169)
Q Consensus 11 Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~--~-~~-l~~G~~V~F 55 (169)
|.-.....+|||........+-.+.+..|...+ . .- |++||.|.-
T Consensus 23 v~l~~~~~glG~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ 71 (123)
T 1ueq_A 23 TTLKKSNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVY 71 (123)
T ss_dssp EEEECCTTSCSEEEECCSSSSCCCEEEEECTTSHHHHTSCCCTTCEEEE
T ss_pred EEEEeCCCceeEEEecccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEE
Confidence 333445679999876422222223344444332 1 12 889998854
No 145
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=20.81 E-value=1.4e+02 Score=18.61 Aligned_cols=37 Identities=27% Similarity=0.186 Sum_probs=30.7
Q ss_pred ccccceEEEEeeCCCCeeEEecCCCCccEEEEeecccc
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKS 41 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~ 41 (169)
-.-+.|+|+.-|..++-=+|.-.|+ ..-+++..+|..
T Consensus 27 Gl~Y~gtI~~V~~~~gtC~V~F~D~-s~~w~~~kdi~~ 63 (66)
T 2eqj_A 27 GLFYLGTIKKINILKQSCFIIFEDS-SKSWVLWKDIQT 63 (66)
T ss_dssp SCEEEEEEEEEETTTTEEEEEETTT-EEEEEETTTEEC
T ss_pred CcEEEeEEEEEccCCcEEEEEEccC-CEEEEEeecccc
Confidence 3457899999999999999999886 567888888764
No 146
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=20.81 E-value=1.9e+02 Score=19.78 Aligned_cols=51 Identities=18% Similarity=0.079 Sum_probs=33.2
Q ss_pred ccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccCCcccCCCCCEEEEEEee
Q 030905 6 RSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDV 59 (169)
Q Consensus 6 ~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~~~~l~~G~~V~F~~~~ 59 (169)
.+.|+|.+--.. ++=.+..+++ ..+..|++---.. ...+.+||.|.+++..
T Consensus 33 e~~G~Vi~~lgn-~~y~V~~~dG-~~~l~~i~GK~Rk-~I~i~~GD~V~ve~~~ 83 (117)
T 2oqk_A 33 QEYGQVQRMLGN-GRLDAYCFDG-QKRLCHIRGKMRK-KVWVNPGDIVLVSLRD 83 (117)
T ss_dssp EEEEEEEEEEET-TEEEEEETTS-CEEEEECCHHHHH-HSCCCTTCEEEEEECT
T ss_pred EEEEEEEEEcCC-CEEEEEeCCC-CEEEEEEcCceec-CCcCCCCCEEEEEEEc
Confidence 457888876543 2223333443 6778888766544 3557799999999874
No 147
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=20.56 E-value=50 Score=21.16 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=17.1
Q ss_pred cceEEEEeeCCCCeeEEecCCC
Q 030905 7 SSGTVKWFSAQKGFGFIAPEDG 28 (169)
Q Consensus 7 ~~G~Vk~~~~~kGfGFI~~~~~ 28 (169)
..|.|+.....++|+||+-.+.
T Consensus 34 ~~G~i~~v~~~~~~afV~f~~~ 55 (103)
T 2dgu_A 34 QFGKLERVKKLKDYAFIHFDER 55 (103)
T ss_dssp HHSCEEEEEECSSCEEEEESSH
T ss_pred hcCCEEEEEEECCEEEEEeCCH
Confidence 3577888888899999987753
No 148
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=20.24 E-value=78 Score=19.12 Aligned_cols=10 Identities=30% Similarity=0.587 Sum_probs=8.0
Q ss_pred CCeeEEecCC
Q 030905 18 KGFGFIAPED 27 (169)
Q Consensus 18 kGfGFI~~~~ 27 (169)
+||+||+-.+
T Consensus 47 ~g~afV~f~~ 56 (81)
T 2krb_A 47 KGYIFLEYAS 56 (81)
T ss_dssp CCEEEEEESS
T ss_pred eEEEEEEECC
Confidence 6899998765
No 149
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.23 E-value=1.2e+02 Score=18.69 Aligned_cols=38 Identities=21% Similarity=0.189 Sum_probs=31.9
Q ss_pred ccccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccC
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSE 42 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~ 42 (169)
-.-+-|+|+.-+..+..=||.-.|. .+.+++..+|...
T Consensus 21 GlfYlgtV~kV~~~~~~ClV~FeD~-s~~wv~~kdi~~~ 58 (63)
T 2e5q_A 21 GLYYLGKIKRVSSSKQSCLVTFEDN-SKYWVLWKDIQHA 58 (63)
T ss_dssp SCEEEEEECCCCSTTSEEEEEETTS-CEEEEEGGGEECC
T ss_pred CCEEEEEEEEEecCCCEEEEEEccC-ceeEEEeeccccc
Confidence 3457899999999999999998876 4789999999765
Done!