Query 030905
Match_columns 169
No_of_seqs 312 out of 2087
Neff 7.2
Searched_HMMs 13730
Date Mon Mar 25 09:45:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030905.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030905hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mjca_ b.40.4.5 (A:) Major co 99.9 1.2E-26 8.8E-31 152.3 9.7 68 5-73 2-69 (69)
2 d1h95a_ b.40.4.5 (A:) Y-box pr 99.9 1E-26 7.5E-31 156.3 6.9 69 5-74 7-79 (79)
3 d1g6pa_ b.40.4.5 (A:) Major co 99.9 1.6E-25 1.2E-29 145.6 7.4 66 7-74 1-66 (66)
4 d1c9oa_ b.40.4.5 (A:) Major co 99.9 2.7E-25 2E-29 144.6 8.0 66 6-73 1-66 (66)
5 d1wfqa_ b.40.4.5 (A:) Cold sho 99.8 9.7E-20 7.1E-24 124.5 9.1 69 4-75 16-85 (89)
6 d2exfa1 g.40.1.1 (A:12-53) HIV 99.5 4.4E-15 3.2E-19 87.4 3.7 41 117-169 1-41 (42)
7 d1nc8a_ g.40.1.1 (A:) HIV nucl 98.2 2.7E-07 1.9E-11 47.9 1.7 19 149-167 5-23 (29)
8 d1nc8a_ g.40.1.1 (A:) HIV nucl 98.2 5.6E-07 4.1E-11 46.6 2.5 23 115-137 4-26 (29)
9 d2exfa1 g.40.1.1 (A:12-53) HIV 97.7 5.4E-06 3.9E-10 47.6 1.8 18 151-168 2-19 (42)
10 d1dsqa_ g.40.1.1 (A:) Nucleic 97.6 1.2E-05 8.8E-10 39.8 1.9 18 151-168 3-20 (26)
11 d2ix0a2 b.40.4.5 (A:4-82) Exor 97.6 3.6E-05 2.6E-09 49.9 4.8 61 4-73 16-76 (79)
12 d1a62a2 b.40.4.5 (A:48-125) Rh 97.4 0.0002 1.5E-08 46.1 6.2 58 17-77 12-76 (78)
13 d1a6bb_ g.40.1.1 (B:) Zinc fin 97.2 6.2E-05 4.5E-09 41.6 1.9 20 150-169 10-29 (40)
14 d1dsqa_ g.40.1.1 (A:) Nucleic 96.3 0.00079 5.8E-08 33.1 1.7 20 118-137 3-22 (26)
15 d1cl4a_ g.40.1.1 (A:) Nucleoca 96.0 0.0018 1.3E-07 34.0 2.1 20 150-169 2-21 (32)
16 d1dsva_ g.40.1.1 (A:) Nucleic 95.8 0.0024 1.8E-07 33.3 2.0 20 150-169 2-21 (31)
17 d1sroa_ b.40.4.5 (A:) S1 RNA-b 95.4 0.03 2.2E-06 34.8 6.7 58 4-64 6-68 (76)
18 d2ba0a1 b.40.4.5 (A:53-135) S1 94.2 0.15 1.1E-05 31.8 7.8 58 4-64 6-69 (83)
19 d1smxa_ b.40.4.5 (A:) S1-domai 93.7 0.11 8.1E-06 33.3 6.5 57 5-62 2-71 (87)
20 d1kl9a2 b.40.4.5 (A:3-88) Euka 93.7 0.092 6.7E-06 33.1 6.1 53 4-59 14-72 (86)
21 d1a6bb_ g.40.1.1 (B:) Zinc fin 93.5 0.023 1.6E-06 31.0 2.4 23 116-138 9-31 (40)
22 d2ahob2 b.40.4.5 (B:1-84) Euka 92.2 0.13 9.8E-06 32.1 5.2 54 4-60 12-71 (84)
23 d1go3e1 b.40.4.5 (E:79-184) C- 91.8 0.21 1.5E-05 32.8 6.0 52 4-59 4-70 (106)
24 d3bzka4 b.40.4.5 (A:637-730) T 91.5 0.49 3.6E-05 30.1 7.5 65 4-72 19-89 (94)
25 d1wi5a_ b.40.4.5 (A:) S1-domai 90.8 0.51 3.7E-05 31.4 7.3 56 4-62 22-83 (119)
26 d1u0la1 b.40.4.5 (A:3-68) Prob 90.6 0.89 6.5E-05 27.1 7.6 56 5-63 1-57 (66)
27 d2je6i1 b.40.4.5 (I:66-152) S1 89.9 0.48 3.5E-05 29.6 6.3 54 4-60 8-68 (87)
28 d1y14b1 b.40.4.5 (B:81-171) C- 89.6 0.41 3E-05 30.1 5.7 52 5-60 5-70 (91)
29 d2z0sa1 b.40.4.5 (A:60-147) S1 89.3 0.81 5.9E-05 28.5 7.0 58 4-64 8-74 (88)
30 d2ix0a1 b.40.4.5 (A:83-172) Ex 86.0 1.7 0.00012 27.3 7.1 63 6-74 3-70 (90)
31 d1j6qa_ b.40.9.1 (A:) Heme cha 84.3 2.5 0.00018 27.3 7.3 60 9-71 38-97 (100)
32 d1e3pa2 b.40.4.5 (A:656-717) S 78.6 0.13 9.7E-06 30.6 -0.8 48 9-59 1-56 (62)
33 d2c35b1 b.40.4.5 (B:78-171) C- 76.5 1.7 0.00012 27.2 4.3 51 5-59 6-72 (94)
34 d1hh2p1 b.40.4.5 (P:127-198) S 75.0 3.5 0.00025 24.8 5.3 50 4-59 9-58 (72)
35 d1cl4a_ g.40.1.1 (A:) Nucleoca 74.5 0.77 5.6E-05 23.6 1.7 21 118-138 3-23 (32)
36 d2nn6h1 b.40.4.5 (H:73-167) S1 73.1 3.7 0.00027 25.7 5.4 57 4-63 9-80 (95)
37 d2ix0a3 b.40.4.5 (A:558-644) E 65.9 3.6 0.00026 25.5 4.0 53 4-59 4-73 (87)
38 d1t9ha1 b.40.4.5 (A:1-67) Prob 61.2 13 0.00092 21.7 7.2 55 6-63 1-58 (67)
39 d1h9ma2 b.40.6.2 (A:74-141) Cy 54.3 12 0.00089 21.6 4.8 54 4-58 5-59 (68)
40 d1h9ra1 b.40.6.2 (A:123-199) C 52.5 13 0.00092 22.1 4.7 54 4-58 6-61 (77)
41 d1guta_ b.40.6.1 (A:) Molybdat 51.0 9.6 0.0007 22.0 3.9 54 4-58 5-59 (67)
42 d1gpra_ b.84.3.1 (A:) Glucose 49.7 17 0.0012 25.0 5.6 46 7-54 53-104 (158)
43 d1ujva_ b.36.1.1 (A:) Membrane 49.0 14 0.001 22.7 4.7 51 11-63 14-64 (96)
44 d2nn6g1 b.40.4.5 (G:107-194) S 48.6 25 0.0018 21.4 7.5 56 5-63 8-66 (88)
45 d2gpra_ b.84.3.1 (A:) Glucose 48.1 18 0.0013 24.7 5.5 46 7-54 51-102 (154)
46 d2f3ga_ b.84.3.1 (A:) Glucose- 45.2 22 0.0016 24.1 5.6 47 7-54 45-96 (150)
47 d2asba1 b.40.4.5 (A:108-183) S 43.7 2.7 0.0002 25.7 0.4 58 4-63 5-69 (76)
48 d2vnud3 b.40.4.5 (D:252-399) E 42.9 19 0.0014 24.0 5.0 52 5-60 21-72 (148)
49 d1fr3a_ b.40.6.1 (A:) Molybdat 41.9 14 0.00099 21.3 3.5 54 4-58 6-59 (67)
50 d1wf2a_ d.58.7.1 (A:) Heteroge 41.5 4.6 0.00033 25.2 1.3 23 6-28 38-60 (98)
51 d1sr3a_ b.40.9.1 (A:) Heme cha 41.5 18 0.0013 23.4 4.4 63 5-71 31-98 (114)
52 d1h9ma1 b.40.6.2 (A:1-73) Cyto 41.0 21 0.0016 20.7 4.4 54 4-58 6-60 (73)
53 d1ef4a_ a.4.11.1 (A:) RNA poly 38.3 5 0.00037 23.0 0.9 10 150-159 3-12 (55)
54 d1m5za_ b.36.1.1 (A:) Glutamat 36.8 18 0.0013 21.9 3.7 38 17-56 18-59 (91)
55 d1tyeb1 b.1.15.1 (B:58-106,B:3 36.1 49 0.0035 21.7 6.1 48 27-74 56-115 (135)
56 d1wida_ b.142.1.2 (A:) DNA-bin 33.6 31 0.0023 21.6 4.6 29 45-74 83-111 (117)
57 d1ueqa_ b.36.1.1 (A:) Membrane 32.6 29 0.0021 22.2 4.4 46 14-59 26-75 (123)
58 d1twfj_ a.4.11.1 (J:) RNA poly 31.8 6.9 0.0005 23.1 0.8 10 150-159 4-13 (65)
59 d1wfva_ b.36.1.1 (A:) Membrane 29.2 13 0.00096 23.2 2.0 40 17-56 21-64 (103)
60 d1uwva1 b.40.4.12 (A:15-74) rR 29.2 44 0.0032 18.5 8.0 56 6-74 2-57 (60)
61 d1jmca1 b.40.4.3 (A:183-298) R 27.8 65 0.0047 20.0 5.6 50 4-56 14-76 (116)
62 d2g1la1 b.26.1.2 (A:498-599) K 27.2 48 0.0035 20.1 4.6 47 7-55 45-92 (102)
63 d2d7pa1 b.1.18.10 (A:8-106) Fi 26.6 57 0.0042 19.7 4.9 38 44-82 14-52 (99)
64 d1yvca1 b.40.4.12 (A:1-69) Hyp 26.5 55 0.004 18.7 6.0 52 4-68 16-67 (69)
65 d1x4ga1 d.58.7.1 (A:8-103) Nuc 25.8 22 0.0016 21.5 2.6 20 9-28 43-64 (96)
66 d1n7ea_ b.36.1.1 (A:) Glutamat 24.5 42 0.0031 20.2 3.9 48 16-63 12-63 (95)
67 d2rdea1 b.45.2.1 (A:138-247) H 24.4 51 0.0037 20.9 4.2 31 17-63 28-58 (110)
68 d2e1ba1 b.43.3.6 (A:1-87) AlaX 23.9 56 0.0041 19.5 4.3 24 30-57 64-87 (87)
69 d2hqsa1 b.68.4.1 (A:163-431) T 23.3 32 0.0023 23.4 3.4 46 22-67 8-54 (269)
70 d1aoza1 b.6.1.3 (A:1-129) Asco 22.3 39 0.0029 21.6 3.5 51 10-61 2-52 (129)
71 d1ju3a1 b.18.1.13 (A:352-574) 21.5 1.2E+02 0.0087 20.8 6.6 37 23-59 100-156 (223)
72 d2dlqa2 g.37.1.1 (A:35-62) GLI 20.2 6.7 0.00049 18.8 -0.7 8 160-167 19-26 (28)
73 d1kwaa_ b.36.1.1 (A:) Cask/Lin 20.1 40 0.0029 20.0 3.0 40 15-56 10-53 (88)
No 1
>d1mjca_ b.40.4.5 (A:) Major cold shock protein {Escherichia coli [TaxId: 562]}
Probab=99.94 E-value=1.2e-26 Score=152.26 Aligned_cols=68 Identities=46% Similarity=0.971 Sum_probs=64.5
Q ss_pred cccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccCCcccCCCCCEEEEEEeeCCCCceeEEEEEcC
Q 030905 5 QRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGRTKAVDVEAA 73 (169)
Q Consensus 5 ~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~~~~l~~G~~V~F~~~~~~kGr~~A~~V~~~ 73 (169)
.+++|+|||||.+||||||+++++++|||||+|+|+..+++.|.+||+|+|++.++++| ++|+||+.+
T Consensus 2 ~r~~G~Vk~f~~~kGfGFI~~d~g~~diFvH~s~l~~~~~~~L~~G~~V~f~~~~~~~G-~~A~~V~~l 69 (69)
T d1mjca_ 2 GKMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKG-PAAGNVTSL 69 (69)
T ss_dssp CCEEEEEEEEETTTTEEEEEETTSCCCEEEEGGGBCCTTTCCCCTTCEEEEEEECCSSS-CEEEEEEEC
T ss_pred CCEEEEEEEEeCCCCEEEEEEcCCCccEEEEhHHhcccCCCcCCCCCEEEEEEEeCCCC-cEEEEEEeC
Confidence 57999999999999999999999889999999999998999999999999999999999 799999864
No 2
>d1h95a_ b.40.4.5 (A:) Y-box protein 1 cold shock domain (YB1-CSD) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.93 E-value=1e-26 Score=156.31 Aligned_cols=69 Identities=46% Similarity=0.860 Sum_probs=63.9
Q ss_pred cccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccCC----cccCCCCCEEEEEEeeCCCCceeEEEEEcCC
Q 030905 5 QRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDVGEDGRTKAVDVEAAS 74 (169)
Q Consensus 5 ~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~----~~~l~~G~~V~F~~~~~~kGr~~A~~V~~~~ 74 (169)
.+++|+|||||.+||||||+++++++|||||+|+|...+ ++.|.+||.|+|++.++++| ++|++|+.|+
T Consensus 7 ~r~~G~VKwfn~~KGfGFI~~ddg~~DvFvH~s~i~~~g~~~~~~~L~~G~~V~f~~~~~~~G-~~A~~Vtgpg 79 (79)
T d1h95a_ 7 TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKG-AEAANVTGPG 79 (79)
T ss_dssp EEEEEEEEEEETTTTEEEEEEGGGTEEEEEEGGGBCSCCCSCCSCSCCSSCEEEEEEEECSSS-EEEESBCCCC
T ss_pred CcccEEEEEEcCCCCeEEEEECCCCccEEEEhhHcccCCCcceeeecCCCCEEEEEEEeCCCC-CeeEEEeCCC
Confidence 678899999999999999999998899999999998876 67899999999999999999 6999998663
No 3
>d1g6pa_ b.40.4.5 (A:) Major cold shock protein {Thermotoga maritima [TaxId: 2336]}
Probab=99.92 E-value=1.6e-25 Score=145.64 Aligned_cols=66 Identities=47% Similarity=0.941 Sum_probs=61.9
Q ss_pred cceEEEEeeCCCCeeEEecCCCCccEEEEeeccccCCcccCCCCCEEEEEEeeCCCCceeEEEEEcCC
Q 030905 7 SSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGRTKAVDVEAAS 74 (169)
Q Consensus 7 ~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~~~~l~~G~~V~F~~~~~~kGr~~A~~V~~~~ 74 (169)
++|+|||||++||||||+++++ +|||||+|+|...+++.|.+|++|+|++.++++| ++|.+|++++
T Consensus 1 l~G~Vk~f~~~kGfGFI~~~~g-~diFvH~s~l~~~g~~~l~~G~~V~f~~~~~~~G-~~A~~V~~id 66 (66)
T d1g6pa_ 1 MRGKVKWFDSKKGYGFITKDEG-GDVFVHWSAIEMEGFKTLKEGQVVEFEIQEGKKG-PQAAHVKVVE 66 (66)
T ss_dssp CCEEEEEEETTTTEEEEEETTS-CBCBBCSSSSCCSSCCCCCSSSEEEEEEECSSSC-CEEEEEEEEC
T ss_pred CeEEEEEEeCCCCeeEEEecCC-ceEEEEhHHhcccCCCcCCCCCEEEEEEEECCCC-CEEEEEEecC
Confidence 5799999999999999999876 6999999999999999999999999999999999 7999999864
No 4
>d1c9oa_ b.40.4.5 (A:) Major cold shock protein {Bacillus caldolyticus [TaxId: 1394]}
Probab=99.92 E-value=2.7e-25 Score=144.55 Aligned_cols=66 Identities=48% Similarity=0.883 Sum_probs=61.0
Q ss_pred ccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccCCcccCCCCCEEEEEEeeCCCCceeEEEEEcC
Q 030905 6 RSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGRTKAVDVEAA 73 (169)
Q Consensus 6 ~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~~~~l~~G~~V~F~~~~~~kGr~~A~~V~~~ 73 (169)
|.+|+|||||++||||||++++ ++|||||+|+|+..+++.|.+|++|+|++.++++| ++|++|+.+
T Consensus 1 M~~G~Vk~fn~~kGfGFI~~d~-g~DiF~H~s~l~~~~~~~L~~G~~V~f~~~~~~~G-~~A~~V~~l 66 (66)
T d1c9oa_ 1 MQRGKVKWFNNEKGYGFIEVEG-GSDVFVHFTAIQGEGFKTLEEGQEVSFEIVQGNRG-PQAANVVKL 66 (66)
T ss_dssp CEEEEEEEEETTTTEEEEEETT-EEEEEEEGGGBCSSSCCCCCTTCEEEEEEEEETTE-EEEEEEEEC
T ss_pred CCCeEEEEEECCCCEEEEEecC-CceEEEEehhcccccCCcCCCCCEEEEEEEECCCC-CEEEEEEEC
Confidence 4589999999999999999986 47999999999999999999999999999999999 799999864
No 5
>d1wfqa_ b.40.4.5 (A:) Cold shock domain protein E1 (UNR) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.80 E-value=9.7e-20 Score=124.47 Aligned_cols=69 Identities=26% Similarity=0.455 Sum_probs=61.7
Q ss_pred ccccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccCCcccCCCCCEEEEEEeeCCC-CceeEEEEEcCCC
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGED-GRTKAVDVEAASR 75 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~~~~l~~G~~V~F~~~~~~k-Gr~~A~~V~~~~g 75 (169)
.++.+|+|+||+ ++||||+++++.+|||||+++|.. +++.|++||+|+|++.++++ ++++|++|..+.+
T Consensus 16 ~~r~~G~I~~~~--~gfGFI~~~~~~~dvF~H~s~~~~-~~~~l~~G~~VeF~v~~~~kg~k~~Av~V~~~~~ 85 (89)
T d1wfqa_ 16 ALRETGVIEKLL--TSYGFIQCSERQARLFFHCSQYNG-NLQDLKVGDDVEFEVSSDRRTGKPIAVKLVKISG 85 (89)
T ss_dssp CCEEEEEEEEEC--SSEEEEEETTTTEEEEEETTTCSS-CTTTCCTTCCEEEEEEECSSSCCEEEEEEEESSC
T ss_pred cceEEEEEEEec--CccceEEeCCCCceEEEEeehhhc-cCCcccCCCEEEEEEEECCCCCceEEEEEEECCC
Confidence 478999999995 599999999998999999999974 57889999999999999976 6889999987764
No 6
>d2exfa1 g.40.1.1 (A:12-53) HIV nucleocapsid {Human immunodeficiency virus type 1, different isolates [TaxId: 11676]}
Probab=99.51 E-value=4.4e-15 Score=87.35 Aligned_cols=41 Identities=46% Similarity=1.139 Sum_probs=36.5
Q ss_pred CCCccccCcCCeecccCCCCCCCCCCCCCCCCCCccccccCCCCccCCCCCCC
Q 030905 117 SGACFNCGRTGHIARECYSRGRGGGRGYGGGRGGGGCYNCGEEGHFARDCPNY 169 (169)
Q Consensus 117 ~~~C~~Cg~~GH~a~~C~~~~~~~~~~~~g~~~~~~C~~Cg~~GH~ardCp~~ 169 (169)
++.||+|++.||++++||.+. ...||+|++.||+++|||+.
T Consensus 1 ni~C~~Cg~~GH~~~~Cp~~~------------~~~C~~Cg~~GH~~~~Cp~r 41 (42)
T d2exfa1 1 NVKCFNCGKEGHTARNCRAPR------------KKGCWKCGKEGHQMKDCTER 41 (42)
T ss_dssp CCCCTTTCCSSSCTTTCSSCC------------CSSCSSSCCSSSCTTTCCSS
T ss_pred CCccccCCCcCcCcccCcCCC------------cCccccCCCCCeecccCCCC
Confidence 468999999999999999853 45799999999999999973
No 7
>d1nc8a_ g.40.1.1 (A:) HIV nucleocapsid {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=98.18 E-value=2.7e-07 Score=47.87 Aligned_cols=19 Identities=53% Similarity=1.066 Sum_probs=16.6
Q ss_pred CCccccccCCCCccCCCCC
Q 030905 149 GGGGCYNCGEEGHFARDCP 167 (169)
Q Consensus 149 ~~~~C~~Cg~~GH~ardCp 167 (169)
...+||+|+++||+|++|.
T Consensus 5 ~~ikCfNCGkeGH~ar~Cr 23 (29)
T d1nc8a_ 5 KVIRCWNCGKEGHSARQCR 23 (29)
T ss_dssp CCCBCTTTSCBSSCGGGCC
T ss_pred ceeEeecCCccchhhhhcc
Confidence 3678999999999999995
No 8
>d1nc8a_ g.40.1.1 (A:) HIV nucleocapsid {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=98.15 E-value=5.6e-07 Score=46.63 Aligned_cols=23 Identities=39% Similarity=0.874 Sum_probs=20.4
Q ss_pred CCCCCccccCcCCeecccCCCCC
Q 030905 115 AGSGACFNCGRTGHIARECYSRG 137 (169)
Q Consensus 115 ~~~~~C~~Cg~~GH~a~~C~~~~ 137 (169)
...+.|||||+.||+|++|..+.
T Consensus 4 r~~ikCfNCGkeGH~ar~CrAPR 26 (29)
T d1nc8a_ 4 RKVIRCWNCGKEGHSARQCRAPR 26 (29)
T ss_dssp CCCCBCTTTSCBSSCGGGCCSSS
T ss_pred cceeEeecCCccchhhhhccCcc
Confidence 46789999999999999999864
No 9
>d2exfa1 g.40.1.1 (A:12-53) HIV nucleocapsid {Human immunodeficiency virus type 1, different isolates [TaxId: 11676]}
Probab=97.72 E-value=5.4e-06 Score=47.58 Aligned_cols=18 Identities=56% Similarity=1.274 Sum_probs=16.8
Q ss_pred ccccccCCCCccCCCCCC
Q 030905 151 GGCYNCGEEGHFARDCPN 168 (169)
Q Consensus 151 ~~C~~Cg~~GH~ardCp~ 168 (169)
.+||+|++.||+++|||+
T Consensus 2 i~C~~Cg~~GH~~~~Cp~ 19 (42)
T d2exfa1 2 VKCFNCGKEGHTARNCRA 19 (42)
T ss_dssp CCCTTTCCSSSCTTTCSS
T ss_pred CccccCCCcCcCcccCcC
Confidence 579999999999999996
No 10
>d1dsqa_ g.40.1.1 (A:) Nucleic acid binding protein p14 {Mouse mammary tumor virus [TaxId: 11757]}
Probab=97.61 E-value=1.2e-05 Score=39.83 Aligned_cols=18 Identities=44% Similarity=1.224 Sum_probs=15.4
Q ss_pred ccccccCCCCccCCCCCC
Q 030905 151 GGCYNCGEEGHFARDCPN 168 (169)
Q Consensus 151 ~~C~~Cg~~GH~ardCp~ 168 (169)
..||.|++.||+.+||.+
T Consensus 3 pvcfscgktghikkdck~ 20 (26)
T d1dsqa_ 3 PVCFSCGKTGHIKRDCKE 20 (26)
T ss_dssp CBCTTTCCBSSCTTTTTC
T ss_pred CEEEecCCcccchhhhhh
Confidence 469999999999999965
No 11
>d2ix0a2 b.40.4.5 (A:4-82) Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]}
Probab=97.61 E-value=3.6e-05 Score=49.87 Aligned_cols=61 Identities=26% Similarity=0.436 Sum_probs=44.1
Q ss_pred ccccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccCCcccCCCCCEEEEEEeeCCCCceeEEEEEcC
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGRTKAVDVEAA 73 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~~~~l~~G~~V~F~~~~~~kGr~~A~~V~~~ 73 (169)
...++|+|.- ..+||||+.+++ .+|||+...++... -.||.|...+.. .++|+.|.=|.++
T Consensus 16 ~~~~~G~i~~--~~~G~GFv~~d~-~~DifI~~~~~~~A-----~~GD~V~v~i~~-~~~r~eg~I~~il 76 (79)
T d2ix0a2 16 TPRAEGVVKA--TEKGFGFLEVDA-QKSYFIPPPQMKKV-----MHGDRIIAVIHS-EKERESAEPEELV 76 (79)
T ss_dssp SCEEEEEEEC--CC--CEEEEEET-TEEEEECHHHHTTC-----CTTCEEEEEEEC-C--CCEEEEEEEE
T ss_pred CCEEEEEEEE--eCCCcEEEEECC-CCcEEECHHHHcCC-----CCCCEEEEEEEe-CCCcEEEEEEEEe
Confidence 4567788875 368999999987 58999999999753 699999999864 4566777655543
No 12
>d1a62a2 b.40.4.5 (A:48-125) Rho termination factor, RNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=97.40 E-value=0.0002 Score=46.08 Aligned_cols=58 Identities=24% Similarity=0.499 Sum_probs=46.4
Q ss_pred CCCeeEEecC-----CCCccEEEEeeccccCCcccCCCCCEEEEEEeeCCCCc--eeEEEEEcCCCcc
Q 030905 17 QKGFGFIAPE-----DGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGR--TKAVDVEAASRSR 77 (169)
Q Consensus 17 ~kGfGFI~~~-----~~~~dvF~H~s~i~~~~~~~l~~G~~V~F~~~~~~kGr--~~A~~V~~~~g~~ 77 (169)
..|||||... .+.+||||..+.|+..+ |+.|+.|+=.+.....+. +..+.|..+++.+
T Consensus 12 ~dGyGFLR~~~~~y~~~~~DiyVs~s~Irrfg---LR~GD~V~G~vr~p~~~ek~~~L~~V~~VNG~~ 76 (78)
T d1a62a2 12 QDGFGFLRSADSSYLAGPDDIYVSPSQIRRFN---LRTGDTISGKIRPPKEGERYFALLKVNEVNFDK 76 (78)
T ss_dssp TTSCEEEECGGGTTCCCTTCEEECHHHHHHTT---CCTTCEEEEEEECCCTTCCSEEEEEEEEETTBC
T ss_pred CCCcEEeECCccCCCCCCcceEECHHHHHHhC---CCcCcEEEEEEECCCCCCCceeeEEEeeeCCcC
Confidence 4799999973 35679999999999875 889999999998775552 5567888887654
No 13
>d1a6bb_ g.40.1.1 (B:) Zinc finger protein ncp10 {Moloney murine leukemia virus, MoMLV [TaxId: 11801]}
Probab=97.23 E-value=6.2e-05 Score=41.59 Aligned_cols=20 Identities=45% Similarity=1.082 Sum_probs=17.1
Q ss_pred CccccccCCCCccCCCCCCC
Q 030905 150 GGGCYNCGEEGHFARDCPNY 169 (169)
Q Consensus 150 ~~~C~~Cg~~GH~ardCp~~ 169 (169)
...|-.|.+.|||++|||..
T Consensus 10 kDQCAyCke~GHW~~dCPkk 29 (40)
T d1a6bb_ 10 RDQCAYCKEKGHWAKDCPKK 29 (40)
T ss_dssp SSSCSSSCCTTCCTTSCSSS
T ss_pred chhhHHHhhcCchhhhCccC
Confidence 46799999999999999863
No 14
>d1dsqa_ g.40.1.1 (A:) Nucleic acid binding protein p14 {Mouse mammary tumor virus [TaxId: 11757]}
Probab=96.35 E-value=0.00079 Score=33.08 Aligned_cols=20 Identities=50% Similarity=1.232 Sum_probs=17.1
Q ss_pred CCccccCcCCeecccCCCCC
Q 030905 118 GACFNCGRTGHIARECYSRG 137 (169)
Q Consensus 118 ~~C~~Cg~~GH~a~~C~~~~ 137 (169)
..||.|++.||+.++|....
T Consensus 3 pvcfscgktghikkdck~e~ 22 (26)
T d1dsqa_ 3 PVCFSCGKTGHIKRDCKEEX 22 (26)
T ss_dssp CBCTTTCCBSSCTTTTTCC-
T ss_pred CEEEecCCcccchhhhhhhh
Confidence 47999999999999998753
No 15
>d1cl4a_ g.40.1.1 (A:) Nucleocapsid protein from mason-pfizer monkey virus (MPMV) {Mason-pfizer monkey virus [TaxId: 11855]}
Probab=95.97 E-value=0.0018 Score=34.05 Aligned_cols=20 Identities=30% Similarity=0.715 Sum_probs=16.8
Q ss_pred CccccccCCCCccCCCCCCC
Q 030905 150 GGGCYNCGEEGHFARDCPNY 169 (169)
Q Consensus 150 ~~~C~~Cg~~GH~ardCp~~ 169 (169)
+..|.+|.+--|||+||.++
T Consensus 2 P~lCPrC~kG~HWa~~Crsk 21 (32)
T d1cl4a_ 2 PGLCPRCKRGKHWANECKSK 21 (32)
T ss_dssp CCSCSSCSSCSSCSTTCCCT
T ss_pred CccCccccCcchHHHHhhhh
Confidence 35799999999999999763
No 16
>d1dsva_ g.40.1.1 (A:) Nucleic acid binding protein p14 {Mouse mammary tumor virus [TaxId: 11757]}
Probab=95.78 E-value=0.0024 Score=33.34 Aligned_cols=20 Identities=25% Similarity=0.625 Sum_probs=16.9
Q ss_pred CccccccCCCCccCCCCCCC
Q 030905 150 GGGCYNCGEEGHFARDCPNY 169 (169)
Q Consensus 150 ~~~C~~Cg~~GH~ardCp~~ 169 (169)
...|.+|.+--|||+||-++
T Consensus 2 p~lCPrC~kG~HWa~~Crsk 21 (31)
T d1dsva_ 2 PGLCPRCKKGYHWKSECKSK 21 (31)
T ss_dssp CCBCTTTCSSBSCTTTCCCS
T ss_pred CccCccccCcchHHHHhhhh
Confidence 35799999999999999764
No 17
>d1sroa_ b.40.4.5 (A:) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Escherichia coli [TaxId: 562]}
Probab=95.35 E-value=0.03 Score=34.82 Aligned_cols=58 Identities=28% Similarity=0.375 Sum_probs=44.7
Q ss_pred ccccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccCCc----ccCCCCCEEEEEEee-CCCCc
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGF----RTLSEGQTVEFSVDV-GEDGR 64 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~~----~~l~~G~~V~F~~~~-~~kGr 64 (169)
.+.++|+|+...+ ||.+..-....+-|+|+++|...-. ..+++||.|++.+.. ++++|
T Consensus 6 G~iv~G~V~~v~~---~G~fV~l~~~~~Glv~~sels~~~~~~~~~~~~~G~~v~v~Vi~id~~~r 68 (76)
T d1sroa_ 6 GRVYTGKVTRIVD---FGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGR 68 (76)
T ss_dssp TSEEEEEEEEEET---TEEEEECSSSCCCBCCTTSSCSSCCSCHHHHCCTTCEEEEEEEECCTTCC
T ss_pred CCEEEEEEEEEeC---cEEEEEeCCCCEEEEEhHHhCccccCCHHHccCCCCEEEEEEEEECCCCC
Confidence 5678999999985 7766665555789999999976532 348999999998887 45564
No 18
>d2ba0a1 b.40.4.5 (A:53-135) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=94.18 E-value=0.15 Score=31.82 Aligned_cols=58 Identities=12% Similarity=0.022 Sum_probs=41.9
Q ss_pred ccccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccCC-----cccCCCCCEEEEEEee-CCCCc
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG-----FRTLSEGQTVEFSVDV-GEDGR 64 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~-----~~~l~~G~~V~F~~~~-~~kGr 64 (169)
.+.+.|+|+.-.+ ||.+..-...-+-|+|++++.... ...+++||.|...+.. +++++
T Consensus 6 Gd~V~G~V~~v~~---~g~~V~i~~~~~g~l~~se~s~~~~~~~~~~~~~vGd~V~~kV~~vd~~~~ 69 (83)
T d2ba0a1 6 GDVVIGIIREVAA---NGWAVDIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDPKMK 69 (83)
T ss_dssp TCEEEEEEEEECS---SEEEEECSSSSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEECTTCC
T ss_pred CCEEEEEEEEEEC---CEEEEecCCCeeEEEecccccccccccChhhhcccccEEEEEEEEECCCCC
Confidence 4678999999865 455555444579999999997532 2348999999998876 34553
No 19
>d1smxa_ b.40.4.5 (A:) S1-domain of Ribonuclease E {Escherichia coli [TaxId: 562]}
Probab=93.68 E-value=0.11 Score=33.27 Aligned_cols=57 Identities=21% Similarity=0.207 Sum_probs=46.3
Q ss_pred cccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccCC-------------cccCCCCCEEEEEEeeCCC
Q 030905 5 QRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG-------------FRTLSEGQTVEFSVDVGED 62 (169)
Q Consensus 5 ~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~-------------~~~l~~G~~V~F~~~~~~k 62 (169)
..+.|+|+...+.-.=-||..... ++-|+|++++.... -..|++||.|.-++..++.
T Consensus 2 NIY~G~V~~V~pgl~AAFVDiG~~-k~gFL~~~di~~~~~~~~~~~~~~~~i~~~l~~G~~ilVQV~Ke~~ 71 (87)
T d1smxa_ 2 NIYKGKITRIEPSLEAAFVDYGAE-RHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEER 71 (87)
T ss_dssp CCEEEEEEEEEGGGTEEEEESSSS-SCEEEEGGGSCGGGCSSCCCSSSCCCGGGTCCTTCEEEEEEEECCB
T ss_pred CcEEEEEEEecCCceEEEEEeCCC-ccceeEecccceeeeccccccccccchhhhccCCCeEEEEEeeccc
Confidence 468899999999999999998765 78999999875432 1358999999999998753
No 20
>d1kl9a2 b.40.4.5 (A:3-88) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=93.65 E-value=0.092 Score=33.11 Aligned_cols=53 Identities=8% Similarity=0.072 Sum_probs=36.3
Q ss_pred ccccceEEEEeeCCCCee-EEecCC-CCccEEEEeeccccCC----cccCCCCCEEEEEEee
Q 030905 4 VQRSSGTVKWFSAQKGFG-FIAPED-GGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDV 59 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfG-FI~~~~-~~~dvF~H~s~i~~~~----~~~l~~G~~V~F~~~~ 59 (169)
.+.++|+|+... -|| ||.-+. .+-+-|+|+++|...- ...+++||.|...+..
T Consensus 14 G~iv~G~V~~i~---~~G~fV~l~~~~~i~G~i~~sels~~~~~~~~~~~~~Gd~v~~kV~~ 72 (86)
T d1kl9a2 14 EDVVMVNVRSIA---EMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIR 72 (86)
T ss_dssp TCEEEEEEEEEC---SSEEEEEETTTTTEEEEEEGGGC------------CTTCEEEEEEEE
T ss_pred CCEEEEEEEEEe---CCeEEEEEecCCCEEEEEEeeeccccccccceEEeecccEEEEEEEE
Confidence 467899999985 488 666654 3468999999996542 2447899999998876
No 21
>d1a6bb_ g.40.1.1 (B:) Zinc finger protein ncp10 {Moloney murine leukemia virus, MoMLV [TaxId: 11801]}
Probab=93.54 E-value=0.023 Score=30.97 Aligned_cols=23 Identities=30% Similarity=0.745 Sum_probs=19.4
Q ss_pred CCCCccccCcCCeecccCCCCCC
Q 030905 116 GSGACFNCGRTGHIARECYSRGR 138 (169)
Q Consensus 116 ~~~~C~~Cg~~GH~a~~C~~~~~ 138 (169)
....|--|-+.||++++||....
T Consensus 9 ~kDQCAyCke~GHW~~dCPkkpr 31 (40)
T d1a6bb_ 9 DRDQCAYCKEKGHWAKDCPKKPR 31 (40)
T ss_dssp CSSSCSSSCCTTCCTTSCSSSCC
T ss_pred cchhhHHHhhcCchhhhCccCCC
Confidence 44579999999999999998653
No 22
>d2ahob2 b.40.4.5 (B:1-84) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Sulfolobus solfataricus [TaxId: 2287]}
Probab=92.22 E-value=0.13 Score=32.07 Aligned_cols=54 Identities=22% Similarity=0.254 Sum_probs=39.1
Q ss_pred ccccceEEEEeeCCCCee-EEecCC-CCccEEEEeeccccCC----cccCCCCCEEEEEEeeC
Q 030905 4 VQRSSGTVKWFSAQKGFG-FIAPED-GGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDVG 60 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfG-FI~~~~-~~~dvF~H~s~i~~~~----~~~l~~G~~V~F~~~~~ 60 (169)
.+.++|+|+...+ || ||+.+. .+-+-|+|+++|...- ...+++||.|.+.+..-
T Consensus 12 G~iv~G~V~~v~~---~G~fV~l~~~~gi~Gli~~sels~~~~~~~~~~~~~G~~v~~kV~~v 71 (84)
T d2ahob2 12 GEILIATVKQVFD---YGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRV 71 (84)
T ss_dssp TCCCEEEEEEEET---TEEEEEETTTTTEEEEECGGGCC-----CHHHHTCSSCEEECEEEEE
T ss_pred CCEEEEEEEEEEC---CEEEEEECCcCCEEEEEEccccccccccccceEeecccEEEEEEEEE
Confidence 4678999999964 67 455553 3468999999998642 23489999999988763
No 23
>d1go3e1 b.40.4.5 (E:79-184) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=91.84 E-value=0.21 Score=32.80 Aligned_cols=52 Identities=19% Similarity=0.180 Sum_probs=40.0
Q ss_pred ccccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccCCc---------------ccCCCCCEEEEEEee
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGF---------------RTLSEGQTVEFSVDV 59 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~~---------------~~l~~G~~V~F~~~~ 59 (169)
...+.|+|+..+. |||...-+ +-+-|+|+++|...-+ ..+++||.|...|..
T Consensus 4 gei~~g~V~~v~~---~G~FVel~-~ieGlv~~s~l~~~~~~~~~~~~~~~~~~~~~~~~~Gd~v~vkV~~ 70 (106)
T d1go3e1 4 YELIEGEVVDVVE---FGSFVRLG-PLDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVA 70 (106)
T ss_dssp TCEEEEEEEEEET---TEEEEECS-SSEEEEEGGGSCSSCEEECCC--CEEETTTCCEECTTCEEEEEEEE
T ss_pred CCEEEEEEEEEee---eEEEEEee-CeEEEEEeecccCceeeeccceeEEeecccccceeecceEEEEEEE
Confidence 4568899999874 56655554 3799999999986433 568999999988875
No 24
>d3bzka4 b.40.4.5 (A:637-730) Tex S1-domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=91.48 E-value=0.49 Score=30.07 Aligned_cols=65 Identities=17% Similarity=0.198 Sum_probs=47.6
Q ss_pred ccccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccCC----cccCCCCCEEEEEEeeC--CCCceeEEEEEc
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG----FRTLSEGQTVEFSVDVG--EDGRTKAVDVEA 72 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~----~~~l~~G~~V~F~~~~~--~kGr~~A~~V~~ 72 (169)
.+.++|+|+.... ||.+..-..+-+-|+|++++...- -..+++||.|...+..- .+++ ..+.+..
T Consensus 19 G~iv~g~V~~v~~---~G~~V~l~~~i~G~i~~~~ls~~~~~~~~~~~~vGq~v~~~V~~id~~~~~-i~LS~K~ 89 (94)
T d3bzka4 19 GMVLEGVVTNVTN---FGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIPRNR-VGLSMRM 89 (94)
T ss_dssp TCEEEEEEEEEET---TEEEEECSSSSCEEEEGGGGCSSCCSCHHHHCCTTCEEEEEEEEEETTTTE-EEEESCT
T ss_pred CCEEEEEEEEEEC---cEEEEEeCCCceEEeehhhhhcccccChhhhhccCcEEEEEEEEEECCCCE-EEEEEec
Confidence 5678999999974 677777666689999999997542 14578999999997763 4553 4555443
No 25
>d1wi5a_ b.40.4.5 (A:) S1-domain of RRP5 protein homolog (PDCD11, KIAA0185) {Human (Homo sapiens) [TaxId: 9606]}
Probab=90.77 E-value=0.51 Score=31.37 Aligned_cols=56 Identities=18% Similarity=0.158 Sum_probs=41.9
Q ss_pred ccccceEEEEeeCCCCeeEEecC-CCCccEEEEeeccccC-----CcccCCCCCEEEEEEeeCCC
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAPE-DGGEDLFVHQTSIKSE-----GFRTLSEGQTVEFSVDVGED 62 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~~-~~~~dvF~H~s~i~~~-----~~~~l~~G~~V~F~~~~~~k 62 (169)
.+.++|+|+... -||++..- ...-+=|+|+++|... ....|++||.|.+.+..-..
T Consensus 22 G~iv~G~V~~i~---~~G~~V~lg~~~~~G~l~~~els~~~~~~~~~~~~~vGq~v~~~V~~vd~ 83 (119)
T d1wi5a_ 22 GMLLTGTVSSLE---DHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKG 83 (119)
T ss_dssp TCEEEEEEEEEC---SSEEEEECCCSSCEEEEEHHHHHHHHHHHSSSCCCCTTCEEEEEEEECCT
T ss_pred CCEEEEEEEEEe---ccEEEEEEeccccceEEeHHHhccccccCCHHHhcccceEEEEEEEEEeC
Confidence 678999999995 45766665 3446899999998642 23478999999999877543
No 26
>d1u0la1 b.40.4.5 (A:3-68) Probable GTPase EngC (YjeQ), N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=90.59 E-value=0.89 Score=27.14 Aligned_cols=56 Identities=21% Similarity=0.357 Sum_probs=37.7
Q ss_pred cccceEEEEeeCCCCeeEEecCCCCccEEEEeec-cccCCcccCCCCCEEEEEEeeCCCC
Q 030905 5 QRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTS-IKSEGFRTLSEGQTVEFSVDVGEDG 63 (169)
Q Consensus 5 ~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~-i~~~~~~~l~~G~~V~F~~~~~~kG 63 (169)
|+.+|+|.... .+|=.|..++.++.+-.++.. |.... ..|.+||.|.|+......|
T Consensus 1 m~~~G~Vi~~~--~~~y~V~~~e~g~~~~c~~rG~lr~~~-~~~~VGD~V~~~~~~~~~g 57 (66)
T d1u0la1 1 LRRRGIVVSFH--SNMVTVEDEETGERILCKLRGKFRLQN-LKIYVGDRVEYTPDETGSG 57 (66)
T ss_dssp CCEEEEEEEEE--TTEEEEEETTTCCEEEEEECGGGTTTT-CCCCTTCEEEEECCCSSSE
T ss_pred CCeeEEEEEEE--CCEEEEEECCCCcEEEEEeeccccccC-CccccCCEEEEEECCCCeE
Confidence 45889988875 467777776555555577765 33333 3588999999987765444
No 27
>d2je6i1 b.40.4.5 (I:66-152) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=89.94 E-value=0.48 Score=29.58 Aligned_cols=54 Identities=13% Similarity=0.145 Sum_probs=40.2
Q ss_pred ccccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccCC-------cccCCCCCEEEEEEeeC
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG-------FRTLSEGQTVEFSVDVG 60 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~-------~~~l~~G~~V~F~~~~~ 60 (169)
.+.+.|+|+.... ||++..-...-+-|+|+++|...- ...+++||.|...+..-
T Consensus 8 Gdiv~G~V~~i~~---~g~fV~i~~~~~gll~~s~~~~~~~~~~~~~~~~~~~Gd~v~~kV~~v 68 (87)
T d2je6i1 8 NDIVIGLVEDVEI---YGWVVDIKAPYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENF 68 (87)
T ss_dssp TCEEEEEEEEECS---SEEEEECSSSSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEE
T ss_pred CCEEEEEEEEEEC---CEEEEEeCCCEEEEEehHHhCCceeccccccchhhcccceEEEEEEEE
Confidence 4678999999864 565555555579999999996531 13589999999998753
No 28
>d1y14b1 b.40.4.5 (B:81-171) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=89.58 E-value=0.41 Score=30.14 Aligned_cols=52 Identities=15% Similarity=0.177 Sum_probs=37.0
Q ss_pred cccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccCC--------------cccCCCCCEEEEEEeeC
Q 030905 5 QRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG--------------FRTLSEGQTVEFSVDVG 60 (169)
Q Consensus 5 ~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~--------------~~~l~~G~~V~F~~~~~ 60 (169)
+.+.|+|+.-++ .|+ |++.. .-|.|+|++.|...- -..++.|+.|.+.+..-
T Consensus 5 ev~~g~I~~v~~-~G~-fv~lg--~~eg~i~~~~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvkV~~v 70 (91)
T d1y14b1 5 EVVDGTVVSCSQ-HGF-EVQVG--PMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGC 70 (91)
T ss_dssp CEEEEEEEEEET-TEE-EEEET--TEEEEEEGGGSCTTCEECC-----CEECSSCEECTTCEEEEEEEEE
T ss_pred CEEEEEEEEEEe-eEE-EEEEc--CeEEEEEhhhcCcceEEccccceeEecccCeEEeCCCEEEEEEEEE
Confidence 457899999874 455 55553 358999999996431 12578899998887743
No 29
>d2z0sa1 b.40.4.5 (A:60-147) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]}
Probab=89.33 E-value=0.81 Score=28.46 Aligned_cols=58 Identities=9% Similarity=0.047 Sum_probs=42.0
Q ss_pred ccccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccCCc--------ccCCCCCEEEEEEee-CCCCc
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGF--------RTLSEGQTVEFSVDV-GEDGR 64 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~~--------~~l~~G~~V~F~~~~-~~kGr 64 (169)
.+.+.|+|+.-. .||++..-....+-|+|++++..... ..+++||.|...+.. +++++
T Consensus 8 GdvV~G~V~~v~---~~g~fV~i~~~~~g~l~~se~~~~~~~~~~~~~~~~~~vGd~V~~kV~~vd~~~~ 74 (88)
T d2z0sa1 8 GDVVIGLIQSVG---IMNWFVDINSPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFDKTRS 74 (88)
T ss_dssp TCCEEEEEEEEC---SSEEEEECSSSSCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEEEEECTTSC
T ss_pred CCEEEEEEEEEE---CCeEEEEeCCCeEEEEehHHhCcccccccccchhhhcccCcEEEEEEEEECCCCC
Confidence 467889999976 35655555556799999999965421 347899999998886 45553
No 30
>d2ix0a1 b.40.4.5 (A:83-172) Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]}
Probab=85.99 E-value=1.7 Score=27.32 Aligned_cols=63 Identities=14% Similarity=0.060 Sum_probs=43.1
Q ss_pred ccceEEEEeeCCCCeeEEecCCCC--ccEEEEeeccccCCcccCCCCCEEEEEEeeCC-C-Cc-eeEEEEEcCC
Q 030905 6 RSSGTVKWFSAQKGFGFIAPEDGG--EDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGE-D-GR-TKAVDVEAAS 74 (169)
Q Consensus 6 ~~~G~Vk~~~~~kGfGFI~~~~~~--~dvF~H~s~i~~~~~~~l~~G~~V~F~~~~~~-k-Gr-~~A~~V~~~~ 74 (169)
+..|++ -..++|.||.+|+.. .+||+-...... ..+++||.|.-+|.+-+ + .+ ++|.=+..++
T Consensus 3 rfVGr~---~~~~~~~fVvPd~~ri~~~I~I~~~~~~~---~~ak~Gd~Vvvei~~~P~~~~~~~~g~I~evlG 70 (90)
T d2ix0a1 3 RFVGKV---QGKNDRLAIVPDHPLLKDAIPCRAARGLN---HEFKEGDWAVAEMRRHPLKGDRSFYAELTQYIT 70 (90)
T ss_dssp EEEEEE---ESCSSSEEEEESCTTCCSCEEEEECTTCC---CCCCTTCEEEEEEEECGGGTCSSCEEEEEEECC
T ss_pred cEEEEE---EEeCCEEEEEeCCCccccccccccccccc---ccCCCCCEEEEEEEeCCCCCCCCceEEEEEEEe
Confidence 355665 467899999999864 578876555432 34789999999998764 2 32 3565555554
No 31
>d1j6qa_ b.40.9.1 (A:) Heme chaperone CcmE {Shewanella putrefaciens [TaxId: 24]}
Probab=84.27 E-value=2.5 Score=27.26 Aligned_cols=60 Identities=22% Similarity=0.313 Sum_probs=44.7
Q ss_pred eEEEEeeCCCCeeEEecCCCCccEEEEeeccccCCcccCCCCCEEEEEEeeCCCCceeEEEEE
Q 030905 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGRTKAVDVE 71 (169)
Q Consensus 9 G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~~~~l~~G~~V~F~~~~~~kGr~~A~~V~ 71 (169)
|.|+|-.....+=|+..|....+|-|+++-+... .+++|+.|.-+=.-.++|...|.+|.
T Consensus 38 gSi~~~~~~~~~~F~itD~~~~~i~V~Y~G~lPd---lF~eg~gVVveG~~~~~g~F~A~~vl 97 (100)
T d1j6qa_ 38 GSMVRDPNSLHVQFAVHDSLGGEILVTYDDLLPD---LFREGQGIVAQGVLGEDGKLAATEVL 97 (100)
T ss_dssp TCCEECTTSSCEEEEEECTTCCCEEEEECSCCTT---SCCSSSEEEEEEEECSTTSEEEEEEE
T ss_pred eEEEecCCccEEEEEEcCCceeEEEEEeCCCCCc---hhcCCCeEEEEEEECCCCEEEEEEEE
Confidence 4455433333588999886557899999998764 47899999887777777878998875
No 32
>d1e3pa2 b.40.4.5 (A:656-717) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Streptomyces antibioticus [TaxId: 1890]}
Probab=78.61 E-value=0.13 Score=30.58 Aligned_cols=48 Identities=25% Similarity=0.288 Sum_probs=23.2
Q ss_pred eEEEEeeCCCCeeEEecCCCCccEEEEeeccccC--------CcccCCCCCEEEEEEee
Q 030905 9 GTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSE--------GFRTLSEGQTVEFSVDV 59 (169)
Q Consensus 9 G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~--------~~~~l~~G~~V~F~~~~ 59 (169)
|+|+... -||.+..-..+.+-|+|+|+|... --..+++||.|+..+..
T Consensus 1 G~V~~i~---~fG~FV~l~~g~~Glihiseis~~~~~~~v~~~~~~~~~G~~V~vkV~~ 56 (62)
T d1e3pa2 1 GSVVKTT---TFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAE 56 (62)
T ss_dssp CBEEECC----CSCEECCC---CCCCC-------------------CCSSCBCCCCCCC
T ss_pred CEEEEEE---eceEEEEecCCceEEEEHHHcccccccccccCHHHhcCCCCEEEEEEEE
Confidence 4555553 367555555568999999999632 12348899998776654
No 33
>d2c35b1 b.40.4.5 (B:78-171) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Human (Homo sapiens) [TaxId: 9606]}
Probab=76.54 E-value=1.7 Score=27.25 Aligned_cols=51 Identities=16% Similarity=0.233 Sum_probs=35.7
Q ss_pred cccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccCC-c---------------ccCCCCCEEEEEEee
Q 030905 5 QRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG-F---------------RTLSEGQTVEFSVDV 59 (169)
Q Consensus 5 ~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~-~---------------~~l~~G~~V~F~~~~ 59 (169)
+.+.|+|+.-++ |||...-+ .-|.|+|.+.|...- | ..++.|+.|.+.+..
T Consensus 6 ev~~g~V~~v~~---~G~fv~lg-~~~~~v~~~~l~~d~~y~~~~~~~~~~~~~~~~~~~~Gd~VrvkV~~ 72 (94)
T d2c35b1 6 EVVDAVVTQVNK---VGLFTEIG-PMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVG 72 (94)
T ss_dssp CEEEEEEEEEET---TEEEEEET-TEEEEEEGGGSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEEEEE
T ss_pred CEEEEEEEEEEe---eEEEEEec-CceEEEEhhhcCcceeecccccceEEEcccceEEEeCCCEEEEEEEE
Confidence 457899999874 45444443 368999999997652 1 246778888887774
No 34
>d1hh2p1 b.40.4.5 (P:127-198) S1 domain of NusA {Thermotoga maritima [TaxId: 2336]}
Probab=75.01 E-value=3.5 Score=24.80 Aligned_cols=50 Identities=10% Similarity=0.021 Sum_probs=37.1
Q ss_pred ccccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccCCcccCCCCCEEEEEEee
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDV 59 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~~~~l~~G~~V~F~~~~ 59 (169)
...++|+|+.++ +++=+|.. +..+.++..++.... ..+++||+|.+-+..
T Consensus 9 geiv~G~V~r~~--~~~~~Vdl--g~~eaiLp~~eqip~--E~~~~Gdrik~~i~~ 58 (72)
T d1hh2p1 9 GTVTTAEVIRVM--GEWADIRI--GKLETRLPKKEWIPG--EEIKAGDLVKVYIID 58 (72)
T ss_dssp TCEEEEEEEEEC--SSEEEEEE--TTEEEEEEGGGSCTT--CCCCTTCEEEEEEEE
T ss_pred CcEEEEEEEEEc--CCCEEEEE--CCcEEECCHHHcCCC--CCCCCCCEEEEEEEE
Confidence 567899999985 45544443 346888888877654 678999999987764
No 35
>d1cl4a_ g.40.1.1 (A:) Nucleocapsid protein from mason-pfizer monkey virus (MPMV) {Mason-pfizer monkey virus [TaxId: 11855]}
Probab=74.52 E-value=0.77 Score=23.58 Aligned_cols=21 Identities=43% Similarity=0.789 Sum_probs=18.1
Q ss_pred CCccccCcCCeecccCCCCCC
Q 030905 118 GACFNCGRTGHIARECYSRGR 138 (169)
Q Consensus 118 ~~C~~Cg~~GH~a~~C~~~~~ 138 (169)
..|-+|.+--|+|++|.+.-.
T Consensus 3 ~lCPrC~kG~HWa~~Crsk~~ 23 (32)
T d1cl4a_ 3 GLCPRCKRGKHWANECKSKTD 23 (32)
T ss_dssp CSCSSCSSCSSCSTTCCCTTS
T ss_pred ccCccccCcchHHHHhhhhhc
Confidence 479999999999999997643
No 36
>d2nn6h1 b.40.4.5 (H:73-167) S1-domain of Ribosomal RNA-processing protein 4, RRP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=73.11 E-value=3.7 Score=25.73 Aligned_cols=57 Identities=18% Similarity=0.126 Sum_probs=37.5
Q ss_pred ccccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccCC--------------cccCCCCCEEEEEEeeC-CCC
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG--------------FRTLSEGQTVEFSVDVG-EDG 63 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~--------------~~~l~~G~~V~F~~~~~-~kG 63 (169)
...+.|+|+.-.. -.-|+.... ..+-|+|+|++.... ...|++||.|.-.+..- .++
T Consensus 9 GdiV~G~V~~v~~--~g~~V~I~~-~~~g~l~is~i~~~~~~~rr~~~~~~~~~~~~~~~Gd~V~~kV~~v~~dg 80 (95)
T d2nn6h1 9 GDIVVGRITEVQQ--KRWKVETNS-RLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFSDG 80 (95)
T ss_dssp SBCCCEEEEEEET--TEEEEECSS-SSCEEEESSCCC-------------CHHHHHHSCSSCEECCEEEEEETTT
T ss_pred CCEEEEEEEEEec--CcEEEEeCC-CceEEEEHHHccccccccccccchhhhhhhhhcccccEEEEEEEEECCCC
Confidence 3567899998764 223555544 479999999984211 12489999998766543 556
No 37
>d2ix0a3 b.40.4.5 (A:558-644) Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]}
Probab=65.90 E-value=3.6 Score=25.55 Aligned_cols=53 Identities=11% Similarity=0.074 Sum_probs=37.4
Q ss_pred ccccceEEEEeeCCCCee-EEecCCCCccEEEEeeccccCCc----------------ccCCCCCEEEEEEee
Q 030905 4 VQRSSGTVKWFSAQKGFG-FIAPEDGGEDLFVHQTSIKSEGF----------------RTLSEGQTVEFSVDV 59 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfG-FI~~~~~~~dvF~H~s~i~~~~~----------------~~l~~G~~V~F~~~~ 59 (169)
.+...|+|.... -|| ||+.++..-+-|+|++.|...-+ ..++.||+|...+..
T Consensus 4 ~~~F~g~Is~v~---~~GifV~L~e~~~eGlI~~s~L~~d~y~~d~~~~~l~~~~~~~~~~~~Gd~V~V~v~~ 73 (87)
T d2ix0a3 4 DTRFAAEIVDIS---RGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAE 73 (87)
T ss_dssp CCCEEEEEEEEE---TTEEEEEETTTCCEEEEEGGGTCSCGGGEEEETTTTEEEETTEEEEETTCEEEEEEEE
T ss_pred CCEEEEEEEEEE---cCeEEEEEecCCcEEEEEehhCCCceEEEeccceEEEEEEcccEEEECCCEEEEEEEE
Confidence 456789999886 355 45556666799999999976421 235678888777664
No 38
>d1t9ha1 b.40.4.5 (A:1-67) Probable GTPase EngC (YjeQ), N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=61.23 E-value=13 Score=21.74 Aligned_cols=55 Identities=15% Similarity=0.294 Sum_probs=31.6
Q ss_pred ccceEEEEeeCCCCeeEEecCCCC-ccEE-EEeec-cccCCcccCCCCCEEEEEEeeCCCC
Q 030905 6 RSSGTVKWFSAQKGFGFIAPEDGG-EDLF-VHQTS-IKSEGFRTLSEGQTVEFSVDVGEDG 63 (169)
Q Consensus 6 ~~~G~Vk~~~~~kGfGFI~~~~~~-~dvF-~H~s~-i~~~~~~~l~~G~~V~F~~~~~~kG 63 (169)
|.+|+|..-- .+|=+|..+... ..+| .++.. |+.... .|.+||.|+|+...+..|
T Consensus 1 M~~G~Vik~~--~~~y~V~~e~~~~g~~~~C~~RGk~r~~~~-~p~VGD~V~~~~~~~~~g 58 (67)
T d1t9ha1 1 MPEGKIIKAL--SGFYYVLDESEDSDKVIQCRGRGIFRKNKI-TPLVGDYVVYQAENDKEG 58 (67)
T ss_dssp CCEEEEEEEE--TTEEEEEECSSSSCEEEEEESCSSCCSCCC-CCCBTCEEEEECCTTSCE
T ss_pred CCCEEEEEEE--CCEEEEEecccCCCcEEEEEEceeEecCCC-ccCcCcEEEEEEccCCeE
Confidence 3468776653 477777766321 2233 33322 333333 367999999998765444
No 39
>d1h9ma2 b.40.6.2 (A:74-141) Cytoplasmic molybdate-binding protein ModG {Azotobacter vinelandii [TaxId: 354]}
Probab=54.26 E-value=12 Score=21.57 Aligned_cols=54 Identities=17% Similarity=0.125 Sum_probs=38.9
Q ss_pred ccccceEEEEeeCCCCeeEEecC-CCCccEEEEeeccccCCcccCCCCCEEEEEEe
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAPE-DGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVD 58 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~~-~~~~dvF~H~s~i~~~~~~~l~~G~~V~F~~~ 58 (169)
.....|+|.........--|..+ .++..+...++.-.-.. -.|++|+.|...+.
T Consensus 5 rN~l~g~V~~I~~~~~~~~V~l~~~~g~~l~a~IT~~s~~~-L~L~~G~~V~a~iK 59 (68)
T d1h9ma2 5 RNILTGTVKTIETGAVNAEVTLALQGGTEITSMVTKEAVAE-LGLKPGASASAVIK 59 (68)
T ss_dssp SEEEEEEEEEEEECSSEEEEEEEETTSCEEEEEEEHHHHHH-TTCCTTCEEEEEEC
T ss_pred hhEEEEEEEEEEECCCcEEEEEEeCCCCEEEEEeCHHHHhh-CCCCCCCEEEEEEE
Confidence 45789999999988777777765 34466777776554443 24899999977664
No 40
>d1h9ra1 b.40.6.2 (A:123-199) C-terminal domain of molybdate-dependent transcriptional regulator ModE {Escherichia coli [TaxId: 562]}
Probab=52.52 E-value=13 Score=22.14 Aligned_cols=54 Identities=20% Similarity=0.162 Sum_probs=40.4
Q ss_pred ccccceEEEEeeCCCCeeEEec--CCCCccEEEEeeccccCCcccCCCCCEEEEEEe
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAP--EDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVD 58 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~--~~~~~dvF~H~s~i~~~~~~~l~~G~~V~F~~~ 58 (169)
..++.|+|+...+....-.|.. ++++..+..+++.-.-..+ .|.+|++|...+.
T Consensus 6 rN~l~g~V~~I~~~~~~~~V~v~l~~g~~~l~A~IT~~S~~~L-~L~~G~~V~a~iK 61 (77)
T d1h9ra1 6 RNQWFGTITARDHDDVQQHVDVLLADGKTRLKVAITAQSGARL-GLDEGKEVLILLK 61 (77)
T ss_dssp SEEEEEEEEEECCCSSEEEEEEEETTSSCEEEEEEEHHHHHHH-TCCTTCEEEEEEC
T ss_pred ccEEEEEEEEEEECCCcEEEEEEECCCCEEEEEEeCHHHHHhc-CCCCCCEEEEEEE
Confidence 4578999999998888887765 3444568888876655543 4999999987764
No 41
>d1guta_ b.40.6.1 (A:) Molybdate/tungstate binding protein MOP {Clostridium pasteurianum, MOP II [TaxId: 1501]}
Probab=51.03 E-value=9.6 Score=22.04 Aligned_cols=54 Identities=17% Similarity=0.097 Sum_probs=39.1
Q ss_pred ccccceEEEEeeCCCCeeEEecC-CCCccEEEEeeccccCCcccCCCCCEEEEEEe
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAPE-DGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVD 58 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~~-~~~~dvF~H~s~i~~~~~~~l~~G~~V~F~~~ 58 (169)
..++.|+|+........-.|..+ .++..+...++.-.-.. -.|++|+.|...+.
T Consensus 5 rN~l~g~V~~I~~~~~~~~V~l~l~~g~~l~a~IT~~s~~~-L~L~~G~~V~a~iK 59 (67)
T d1guta_ 5 RNQLKGKVVGLKKGVVTAEVVLEIAGGNKITSIISLDSVEE-LGVKEGAELTAVVK 59 (67)
T ss_dssp SCEEEEEEEEEEECSSEEEEEEEETTSCEEEEEEEHHHHHH-HTCCTTCEEEEECC
T ss_pred hhEEEEEEEEEEECCCcEEEEEEeCCCCEEEEEcCHHHHHH-CCCCCCCEEEEEEE
Confidence 46789999999988888887775 44556776665544443 34999999977654
No 42
>d1gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Bacillus subtilis [TaxId: 1423]}
Probab=49.70 E-value=17 Score=24.95 Aligned_cols=46 Identities=33% Similarity=0.596 Sum_probs=30.2
Q ss_pred cceEEEEeeCCC-CeeEEecCCCCccEEEEe----eccccCCcc-cCCCCCEEE
Q 030905 7 SSGTVKWFSAQK-GFGFIAPEDGGEDLFVHQ----TSIKSEGFR-TLSEGQTVE 54 (169)
Q Consensus 7 ~~G~Vk~~~~~k-GfGFI~~~~~~~dvF~H~----s~i~~~~~~-~l~~G~~V~ 54 (169)
..|+|.+..+.+ -||+.+ ++ +-+|.+|+ .+|...+|. .+++||.|+
T Consensus 53 ~~G~I~~i~~T~HAigi~t-~~-G~evLiHiGiDTV~L~G~gF~~~v~~Gd~Vk 104 (158)
T d1gpra_ 53 VRGKILNVFPTKHAIGLQS-DG-GREILIHFGIDTVSLKGEGFTSFVSEGDRVE 104 (158)
T ss_dssp SSEEEEEECTTSSEEEEEE-TT-SCEEEEECSBSCGGGTTTTEEECCCTTCEEC
T ss_pred eCeEEEEEcCCCCEEEEEe-CC-CeEEEEEEeecccccCCcceEEEEcCCCEEc
Confidence 368998877644 455554 33 46899998 455666665 466777763
No 43
>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}
Probab=48.96 E-value=14 Score=22.70 Aligned_cols=51 Identities=16% Similarity=0.203 Sum_probs=31.2
Q ss_pred EEEeeCCCCeeEEecCCCCccEEEEeeccccCCcccCCCCCEEEEEEeeCCCC
Q 030905 11 VKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDG 63 (169)
Q Consensus 11 Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~~~~l~~G~~V~F~~~~~~kG 63 (169)
|+-.....||||-.........++........ ..|++||.|...-..+-.+
T Consensus 14 v~l~k~~~glGf~i~g~~~~~~~~~~~~~~~~--~~L~~GD~Il~VNg~~v~~ 64 (96)
T d1ujva_ 14 LTIVKGAQGFGFTIADSPTGQRVKQILDIQGC--PGLCEGDLIVEINQQNVQN 64 (96)
T ss_dssp EEEECCSSSSSEEEEEETTEEEEEEESCGGGS--TTCCSSCEEEEETTEECSS
T ss_pred EEEEeCCCcccEEEEeeCCCceEeeccCcccc--cCCCCCCEEEEECCEECCC
Confidence 33334567999988765433445554444333 4699999998765544444
No 44
>d2nn6g1 b.40.4.5 (G:107-194) S1-domain of exosome component 3 (RRP40) {Human (Homo sapiens) [TaxId: 9606]}
Probab=48.57 E-value=25 Score=21.38 Aligned_cols=56 Identities=18% Similarity=0.077 Sum_probs=38.2
Q ss_pred cccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccCC---cccCCCCCEEEEEEeeCCCC
Q 030905 5 QRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEG---FRTLSEGQTVEFSVDVGEDG 63 (169)
Q Consensus 5 ~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~---~~~l~~G~~V~F~~~~~~kG 63 (169)
..+.|+|+.-. .+++...-....+-++|+++|...- ...|.+||.|...+..-.+.
T Consensus 8 D~ViG~V~~~~---~~~~~VdI~s~~~a~L~~~~f~g~~k~~r~~l~~GD~V~arV~~v~~~ 66 (88)
T d2nn6g1 8 DHVIGIVTAKS---GDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQFVVANKD 66 (88)
T ss_dssp EEEEEEEEEEE---TTEEEEECSSSSCCCEESCSSSCCSSCSSSSSCTTCEEEEEEEECCTT
T ss_pred CEEEEEEEEEe---CCeEEEEcCCCeeEEEeHHHcCccccccCcccCCCCEEEEEEEEeCCC
Confidence 45678888754 3444444444578899999985431 35789999999988765443
No 45
>d2gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Mycoplasma capricolum [TaxId: 2095]}
Probab=48.07 E-value=18 Score=24.71 Aligned_cols=46 Identities=26% Similarity=0.473 Sum_probs=29.8
Q ss_pred cceEEEEeeCCCC-eeEEecCCCCccEEEEe----eccccCCcc-cCCCCCEEE
Q 030905 7 SSGTVKWFSAQKG-FGFIAPEDGGEDLFVHQ----TSIKSEGFR-TLSEGQTVE 54 (169)
Q Consensus 7 ~~G~Vk~~~~~kG-fGFI~~~~~~~dvF~H~----s~i~~~~~~-~l~~G~~V~ 54 (169)
..|+|.+..+.+. ||+.+ ++ +-+|.+|+ .+|...+|. .+++||.|+
T Consensus 51 ~dG~I~~i~~T~HAigi~t-~~-G~eiLIHiGidTV~L~G~gF~~~v~~Gd~V~ 102 (154)
T d2gpra_ 51 VSGKLVTAFPTKHAFGIQT-KS-GVEILLHIGLDTVSLDGNGFESFVTQDQEVN 102 (154)
T ss_dssp SCEEEEECCTTCSEEEEEC-TT-SCEEEEECSSSGGGGTTCSEEECCCTTCEEC
T ss_pred cCeEEEEECCCCcEEEEEe-CC-CCEEEEEEcccccccCCceeEEEecCCCEEc
Confidence 4689998877543 44443 44 36899998 456666665 455677763
No 46
>d2f3ga_ b.84.3.1 (A:) Glucose-specific factor III (glsIII) {Escherichia coli [TaxId: 562]}
Probab=45.25 E-value=22 Score=24.06 Aligned_cols=47 Identities=34% Similarity=0.485 Sum_probs=29.7
Q ss_pred cceEEEEeeCCCCeeEEecCCCCccEEEEee----ccccCCcc-cCCCCCEEE
Q 030905 7 SSGTVKWFSAQKGFGFIAPEDGGEDLFVHQT----SIKSEGFR-TLSEGQTVE 54 (169)
Q Consensus 7 ~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s----~i~~~~~~-~l~~G~~V~ 54 (169)
..|+|.+..+.+.-=-|+.+++ -+|.+|+- +|...+|. .+++||.|+
T Consensus 45 ~dG~V~~v~~T~HAigi~t~~G-~eiLIHiGidTV~L~G~gF~~~v~~Gd~V~ 96 (150)
T d2f3ga_ 45 VDGTIGKIFETNHAFSIESDSG-VELFVHFGIDTVELKGEGFKRIAEEGQRVK 96 (150)
T ss_dssp SSEEEEEECTTSSEEEEEETTS-CEEEEECSBSGGGGTTTTEEECSCTTCEEC
T ss_pred cCEEEEEECCCCCEEEEEeCCc-eEEEEEEccchhhcCCcceEEEecCCCEEC
Confidence 3689998877554322444444 68999984 45555664 456677763
No 47
>d2asba1 b.40.4.5 (A:108-183) S1 domain of NusA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=43.75 E-value=2.7 Score=25.65 Aligned_cols=58 Identities=10% Similarity=0.093 Sum_probs=37.2
Q ss_pred ccccceEEEEeeCCCCeeEEecCC----CCccEEEEeeccccCCcccCCCCCEEEEEEee---CCCC
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAPED----GGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDV---GEDG 63 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~~~----~~~dvF~H~s~i~~~~~~~l~~G~~V~F~~~~---~~kG 63 (169)
...++|+|+.++...-.++|..|= ..-+.++..++.... ..+++||+|.+-+.. +++|
T Consensus 5 geiv~G~V~r~~~~~~~~~v~vdlG~~~~~~EaiLp~~eqip~--E~y~~Gdrik~~i~~V~~~~kG 69 (76)
T d2asba1 5 GEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQVPG--ESYEHGNRLRCYVVGVTRGARE 69 (76)
T ss_dssp TCEEEEEEECCHHHHHTTCEEEEECSSSSCEEEEECGGGSCTT--CCCCTTCEEEEEEEEEECCSSS
T ss_pred ceEEEEEEEEEecCCCceEEEEECCCCCCCEEEECCHHHcCCC--cccCCCCEEEEEEEEEEecCCC
Confidence 467899999986543344443331 224677766666544 678999999876654 4555
No 48
>d2vnud3 b.40.4.5 (D:252-399) Exosome complex exonuclease RRP44 {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=42.89 E-value=19 Score=24.03 Aligned_cols=52 Identities=10% Similarity=-0.033 Sum_probs=35.2
Q ss_pred cccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccCCcccCCCCCEEEEEEeeC
Q 030905 5 QRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVG 60 (169)
Q Consensus 5 ~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~~~~l~~G~~V~F~~~~~ 60 (169)
..++|++.---....-+||..++...|||+.-..-.. + --.||.|..+|.+.
T Consensus 21 ~~~~G~lrv~~~n~~ea~V~~~~~~~~v~I~G~~~~N---R-A~~GD~VaVellp~ 72 (148)
T d2vnud3 21 VLYQGNIQISEYNFLEGSVSLPRFSKPVLIVGQKNLN---R-AFNGDQVIVELLPQ 72 (148)
T ss_dssp SEEEEEEEECSSBTTEEEECCSSSSSCEEEESHHHHT---T-CCTTCEEEEEECCG
T ss_pred eEEEEEEEecCCCCeEEEEEeCCCCeeEEEechhhcC---c-cccCCEEEEEEccH
Confidence 4567877753233467999998877789876433332 2 35899999998753
No 49
>d1fr3a_ b.40.6.1 (A:) Molybdate/tungstate binding protein MOP {Sporomusa ovata [TaxId: 2378]}
Probab=41.86 E-value=14 Score=21.27 Aligned_cols=54 Identities=20% Similarity=0.107 Sum_probs=38.2
Q ss_pred ccccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccCCcccCCCCCEEEEEEe
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVD 58 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~~~~l~~G~~V~F~~~ 58 (169)
.....|+|+...+....=-|+.+-++..+...++.-.-.. -.|++|++|...+.
T Consensus 6 rN~l~g~V~~I~~~~~~~~V~l~~~g~~l~a~IT~~s~~~-L~L~~G~~V~a~iK 59 (67)
T d1fr3a_ 6 RNKLEATVKEIVKGTVMAKIVMDYKGTELVAAITIDSVAD-LDLVPGDKVTALVK 59 (67)
T ss_dssp CEEEEEEEEEEEECSSEEEEEEEETTEEEEEEEEHHHHHH-HTCCTTCEEEEEEC
T ss_pred ccEEEEEEEEEEECCCeEEEEEEECCcEEEEEcCHHHHHh-cCCCCCCEEEEEEE
Confidence 4578899999998877777777654455666655444333 35999999987764
No 50
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.53 E-value=4.6 Score=25.16 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=19.0
Q ss_pred ccceEEEEeeCCCCeeEEecCCC
Q 030905 6 RSSGTVKWFSAQKGFGFIAPEDG 28 (169)
Q Consensus 6 ~~~G~Vk~~~~~kGfGFI~~~~~ 28 (169)
...|.|+.....|||+||+-++.
T Consensus 38 ~~~G~i~~~~i~rg~aFV~f~~~ 60 (98)
T d1wf2a_ 38 SKYGKIVGCSVHKGFAFVQYVNE 60 (98)
T ss_dssp TTSSCEEEEEEETEEEEEEESSH
T ss_pred hhcCCEEEEEEeCCeEEEEECCH
Confidence 35688888888899999998764
No 51
>d1sr3a_ b.40.9.1 (A:) Heme chaperone CcmE {Escherichia coli [TaxId: 562]}
Probab=41.51 E-value=18 Score=23.41 Aligned_cols=63 Identities=19% Similarity=0.161 Sum_probs=43.0
Q ss_pred cccceEEE----EeeCCC-CeeEEecCCCCccEEEEeeccccCCcccCCCCCEEEEEEeeCCCCceeEEEEE
Q 030905 5 QRSSGTVK----WFSAQK-GFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGRTKAVDVE 71 (169)
Q Consensus 5 ~~~~G~Vk----~~~~~k-GfGFI~~~~~~~dvF~H~s~i~~~~~~~l~~G~~V~F~~~~~~kGr~~A~~V~ 71 (169)
.|+-|.|+ .|+... -+=|+..|.. .+|-|+++-+... .+++|+.|.-+=.-.+.+...|.+|.
T Consensus 31 iRvgG~V~~gSi~~~~~~~~~~F~itD~~-~~i~V~Y~GilPd---lF~eg~~VVveG~~~~~~~f~A~~vl 98 (114)
T d1sr3a_ 31 LRVGGMVMPGSVQRDPNSLKVTFTIYDAE-GSVDVSYEGILPD---LFREGQGVVVQGELEKGNHILAKEVL 98 (114)
T ss_dssp EEEEEEECTTTCEECSSSSEEEEEEECSS-CEEEEEEESCCCT---TCCTTSEEEEEEEECSSSEEEESSCB
T ss_pred EEEeeEEEEeEEEeecCcceEEEEEccCC-cEEEEEecCCCCh---hhcCCCeEEEEEEECCCCEEEEEEEE
Confidence 35556653 344433 4779998875 6899999988764 47799999876655555556676664
No 52
>d1h9ma1 b.40.6.2 (A:1-73) Cytoplasmic molybdate-binding protein ModG {Azotobacter vinelandii [TaxId: 354]}
Probab=40.97 E-value=21 Score=20.71 Aligned_cols=54 Identities=20% Similarity=0.144 Sum_probs=38.9
Q ss_pred ccccceEEEEeeCCCCeeEEecC-CCCccEEEEeeccccCCcccCCCCCEEEEEEe
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAPE-DGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVD 58 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~~-~~~~dvF~H~s~i~~~~~~~l~~G~~V~F~~~ 58 (169)
..+..|+|+...+...--.|..+ .++..+...++.-.-..+ .|++|+.|...+.
T Consensus 6 rN~l~g~V~~I~~~~~~~~V~l~~~~g~~l~A~IT~~S~~~L-~L~~G~~V~a~iK 60 (73)
T d1h9ma1 6 RNVFKGTVSALKEGAVNAEVDILLGGGDKLAAVVTLESARSL-QLAAGKEVVAVVK 60 (73)
T ss_dssp SEEEEEEEEEEEECSSEEEEEEEESSSCEEEEEEEHHHHHHT-TCCTTCEEEEEEC
T ss_pred ccEEEEEEEEEEeCCCCEEEEEEECCCCEEEEEcCHHHHhhC-CCCCCCEEEEEEE
Confidence 45789999999998888888775 344566666655444433 4899999987764
No 53
>d1ef4a_ a.4.11.1 (A:) RNA polymerase subunit RPB10 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=38.34 E-value=5 Score=23.00 Aligned_cols=10 Identities=30% Similarity=0.843 Sum_probs=7.1
Q ss_pred CccccccCCC
Q 030905 150 GGGCYNCGEE 159 (169)
Q Consensus 150 ~~~C~~Cg~~ 159 (169)
+..||.||+.
T Consensus 3 PVRCFTCGkv 12 (55)
T d1ef4a_ 3 PVRCLSCGKP 12 (55)
T ss_dssp SSSCSCTTSC
T ss_pred CcCcCCCchh
Confidence 4568888875
No 54
>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=36.81 E-value=18 Score=21.88 Aligned_cols=38 Identities=21% Similarity=0.331 Sum_probs=22.7
Q ss_pred CCCeeE-EecCCCCccEEEEeeccccCC---cccCCCCCEEEEE
Q 030905 17 QKGFGF-IAPEDGGEDLFVHQTSIKSEG---FRTLSEGQTVEFS 56 (169)
Q Consensus 17 ~kGfGF-I~~~~~~~dvF~H~s~i~~~~---~~~l~~G~~V~F~ 56 (169)
..+||| |.......-+|| ++|...+ ..-|++||.|.-.
T Consensus 18 ~~~~Gf~i~~~~~~~g~~V--~~V~~~g~A~~~gL~~GD~Il~V 59 (91)
T d1m5za_ 18 MEDFGFSVADGLLEKGVYV--KNIRPAGPGDLGGLKPYDRLLQV 59 (91)
T ss_dssp CSSSSEEEEECTTSSCEEE--EEECTTSHHHHHTCCTTCEEEEE
T ss_pred CCceeEEEeccCCCCCEEE--EEECCCChhHhCcCCCCCEEEEE
Confidence 468999 544333345665 4554443 1348999999643
No 55
>d1tyeb1 b.1.15.1 (B:58-106,B:355-440) Hybrid domain of integrin beta {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.14 E-value=49 Score=21.72 Aligned_cols=48 Identities=23% Similarity=0.277 Sum_probs=30.1
Q ss_pred CCCccEEEEeeccccCC--------cccCCCCCEEEEEEeeCCCCc----eeEEEEEcCC
Q 030905 27 DGGEDLFVHQTSIKSEG--------FRTLSEGQTVEFSVDVGEDGR----TKAVDVEAAS 74 (169)
Q Consensus 27 ~~~~dvF~H~s~i~~~~--------~~~l~~G~~V~F~~~~~~kGr----~~A~~V~~~~ 74 (169)
+..+.|-+-+.+.=..+ -..|++|+.|+|++....+.. .+.+.|.+++
T Consensus 56 ~~p~~v~v~y~s~C~~g~~~~~~~~C~~v~iGd~V~F~v~vt~~~Cp~~~~~~~~I~pvG 115 (135)
T d1tyeb1 56 DLPEELSLSFNATCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVG 115 (135)
T ss_dssp SCCTTEEEEEEEECTTCCEEETCCEEEEECSSCEEEEEEEEEECSCCSCCEEEEEEEETT
T ss_pred CCCCcEEEEEEEECCCCccccCCCccCCcccCCEEEEEEEEEeccCCCCCceEEEEEecc
Confidence 34566777776663322 234799999999998764433 3455566554
No 56
>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=33.57 E-value=31 Score=21.59 Aligned_cols=29 Identities=28% Similarity=0.430 Sum_probs=20.5
Q ss_pred ccCCCCCEEEEEEeeCCCCceeEEEEEcCC
Q 030905 45 RTLSEGQTVEFSVDVGEDGRTKAVDVEAAS 74 (169)
Q Consensus 45 ~~l~~G~~V~F~~~~~~kGr~~A~~V~~~~ 74 (169)
..|++||.|.|+......++ .-+.|+...
T Consensus 83 ~~Lk~GD~~~F~~~~~~~~~-~~i~~r~~~ 111 (117)
T d1wida_ 83 KNLRAGDVVSFSRSNGQDQQ-LYIGWKSRS 111 (117)
T ss_dssp TTCCTTCEEEEEECCSSSCC-EEEEEECCC
T ss_pred cCCCCCCEEEEEEEeCCCCE-EEEEEEECC
Confidence 46999999999987766664 444455433
No 57
>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.63 E-value=29 Score=22.23 Aligned_cols=46 Identities=22% Similarity=0.407 Sum_probs=28.2
Q ss_pred eeCCCCeeEEecCCCCccEEEEeeccccCCc----ccCCCCCEEEEEEee
Q 030905 14 FSAQKGFGFIAPEDGGEDLFVHQTSIKSEGF----RTLSEGQTVEFSVDV 59 (169)
Q Consensus 14 ~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~~----~~l~~G~~V~F~~~~ 59 (169)
.....+|||........+-.+-+++|...+. -.|++||+|...-..
T Consensus 26 ~k~~~glG~~i~gg~~~~~~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~ 75 (123)
T d1ueqa_ 26 KKSNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEV 75 (123)
T ss_dssp ECCTTSCSEEEECCSSSSCCCEEEEECTTSHHHHTSCCCTTCEEEEETTE
T ss_pred EECCCeeCEEEEeecCCCCCEEEEEECCCCHHHHcCCCeeCCEEEEECCE
Confidence 3467899999875332233334556655431 259999999875443
No 58
>d1twfj_ a.4.11.1 (J:) RNA polymerase subunit RPB10 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=31.83 E-value=6.9 Score=23.14 Aligned_cols=10 Identities=30% Similarity=0.966 Sum_probs=7.2
Q ss_pred CccccccCCC
Q 030905 150 GGGCYNCGEE 159 (169)
Q Consensus 150 ~~~C~~Cg~~ 159 (169)
+.+||.||+.
T Consensus 4 PVRCFTCgkv 13 (65)
T d1twfj_ 4 PVRCFSCGKV 13 (65)
T ss_dssp CSBCTTTCCB
T ss_pred CcccCCCCcC
Confidence 4668888875
No 59
>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.18 E-value=13 Score=23.22 Aligned_cols=40 Identities=18% Similarity=0.224 Sum_probs=27.4
Q ss_pred CCCeeEEecCCCCccEEEEeeccccCCc----ccCCCCCEEEEE
Q 030905 17 QKGFGFIAPEDGGEDLFVHQTSIKSEGF----RTLSEGQTVEFS 56 (169)
Q Consensus 17 ~kGfGFI~~~~~~~dvF~H~s~i~~~~~----~~l~~G~~V~F~ 56 (169)
.++|||-.......+..++++.|...+. ..|++||.|.-.
T Consensus 21 ~~glG~~i~gg~~~~~~i~I~~v~~gg~A~~~g~L~~GD~Il~I 64 (103)
T d1wfva_ 21 AKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEI 64 (103)
T ss_dssp TTSSSBCCEEETTTTEEEECCCBCTTSHHHHHCSSCTTCEEEEE
T ss_pred CCccCEEEEeeccCCCCEEEEEEcCCChHHhcCCCCCCCEEEEE
Confidence 4689998753222456788888876542 139999999654
No 60
>d1uwva1 b.40.4.12 (A:15-74) rRNA (Uracil-5-)-methyltransferase RumA, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=29.16 E-value=44 Score=18.47 Aligned_cols=56 Identities=20% Similarity=0.180 Sum_probs=39.8
Q ss_pred ccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccCCcccCCCCCEEEEEEeeCCCCceeEEEEEcCC
Q 030905 6 RSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGRTKAVDVEAAS 74 (169)
Q Consensus 6 ~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~~~~l~~G~~V~F~~~~~~kGr~~A~~V~~~~ 74 (169)
.++-+|...+ ..|.|....++ .-||+. ..-+||.|...+....+..+.|.-++.+.
T Consensus 2 ~i~v~I~~l~-~~G~Gv~r~~g--~vvfV~----------~alPGE~V~v~i~~~~~~~~~a~~~eil~ 57 (60)
T d1uwva1 2 IITVSVNDLD-SFGQGVARHNG--KTLFIP----------GLLPQENAEVTVTEDKKQYARAKVVRRLS 57 (60)
T ss_dssp CEEEEEEEEC-TTSEEEEEETT--EEEEEE----------TCCTTCEEEEEEEEECSSEEEEEEEEECC
T ss_pred EEEEEEEECC-CCCcEEEEECC--EEEEEC----------CCCCCCEEEEEEEEecCCeEEEEEEEEec
Confidence 3566788886 58999998763 456653 12489999999998877656776666554
No 61
>d1jmca1 b.40.4.3 (A:183-298) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.77 E-value=65 Score=19.98 Aligned_cols=50 Identities=18% Similarity=0.323 Sum_probs=31.8
Q ss_pred ccccceEEE------EeeCCCC----eeEEecCCCCccEEEEeeccccCC---cccCCCCCEEEEE
Q 030905 4 VQRSSGTVK------WFSAQKG----FGFIAPEDGGEDLFVHQTSIKSEG---FRTLSEGQTVEFS 56 (169)
Q Consensus 4 ~~~~~G~Vk------~~~~~kG----fGFI~~~~~~~dvF~H~s~i~~~~---~~~l~~G~~V~F~ 56 (169)
.-.++++|. .|...++ |.||..|+.+ +| |...+.... +..|++|+.+.+.
T Consensus 14 ~~~I~~RV~~k~~~r~f~~~~~~g~v~~~~l~De~G-~I--~~t~~~~~~~~f~~~l~~G~vy~i~ 76 (116)
T d1jmca1 14 KWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESG-EI--RATAFNEQVDKFFPLIEVNKVYYFS 76 (116)
T ss_dssp CCEEEEEEEEECCCEEEECSSCEEEEEEEEEECSSC-EE--EEEEEHHHHHHHGGGCCTTCEEEEE
T ss_pred CEEEEEEEEEeccceEEECCCCCceEEEEEEEcCCC-CE--EEEEchhhhhhhHhhcccCCEEEEc
Confidence 346778884 4555444 6777788876 44 555553321 3579999998764
No 62
>d2g1la1 b.26.1.2 (A:498-599) Kinesin-like protein kif1c {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.19 E-value=48 Score=20.10 Aligned_cols=47 Identities=13% Similarity=0.199 Sum_probs=27.0
Q ss_pred cceEEEEeeCCCCeeEEecC-CCCccEEEEeeccccCCcccCCCCCEEEE
Q 030905 7 SSGTVKWFSAQKGFGFIAPE-DGGEDLFVHQTSIKSEGFRTLSEGQTVEF 55 (169)
Q Consensus 7 ~~G~Vk~~~~~kGfGFI~~~-~~~~dvF~H~s~i~~~~~~~l~~G~~V~F 55 (169)
.+-+|.+-....+..++..+ .....+||.-..|... ..|+.||.|.|
T Consensus 45 ~Ha~i~~~~~~~~~~~~i~d~~s~~gt~VNg~~i~~~--~~L~~gD~I~~ 92 (102)
T d2g1la1 45 QHCLFRSIPQPDGEVVVTLEPCEGAETYVNGKLVTEP--LVLKSGNRIVM 92 (102)
T ss_dssp EEEEEEEEECTTSCEEEEEEECTTCCEEETTEECCSC--EECCTTCEEEE
T ss_pred eeeEEEEEEcCCCcEEEEecCCCCCCeEECCeEccce--eEcCCCCEEEE
Confidence 44555555444555544443 3334577766666433 56788888876
No 63
>d2d7pa1 b.1.18.10 (A:8-106) Filamin C {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.55 E-value=57 Score=19.68 Aligned_cols=38 Identities=18% Similarity=0.128 Sum_probs=25.2
Q ss_pred cccCCCCCEEEEEEeeC-CCCceeEEEEEcCCCccccCCC
Q 030905 44 FRTLSEGQTVEFSVDVG-EDGRTKAVDVEAASRSRRFGSR 82 (169)
Q Consensus 44 ~~~l~~G~~V~F~~~~~-~kGr~~A~~V~~~~g~~~~~~~ 82 (169)
...+.+|+.++|.|... ..| ...+.|+.+.+..+...-
T Consensus 14 ~~~~~vg~~~~F~V~~~~~~g-~l~v~v~~p~g~~v~~~v 52 (99)
T d2d7pa1 14 ETGLKVNQPASFAVQLNGARG-VIDARVHTPSGAVEECYV 52 (99)
T ss_dssp SBCCCTTCCEEEEEECTTCCS-CEEEEEECSSSCBCCCEE
T ss_pred cCCeeCCCeEEEEEECCCCCC-eEEEEEEcCCCCEeeeEE
Confidence 34578999999999743 345 345667777776655443
No 64
>d1yvca1 b.40.4.12 (A:1-69) Hypothetical protein MMP0076 {Methanococcus maripaludis [TaxId: 39152]}
Probab=26.46 E-value=55 Score=18.72 Aligned_cols=52 Identities=17% Similarity=0.170 Sum_probs=36.0
Q ss_pred ccccceEEEEeeCCCCeeEEecCCCCccEEEEeeccccCCcccCCCCCEEEEEEeeCCCCceeEE
Q 030905 4 VQRSSGTVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDGRTKAV 68 (169)
Q Consensus 4 ~~~~~G~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~~~~l~~G~~V~F~~~~~~kGr~~A~ 68 (169)
.+.++-+|..+. .+|.|....+ +.-|||. ..-+||.|..++....+.-..|.
T Consensus 16 g~~~~v~I~~l~-~~G~Giar~~--g~vvfV~----------~alPGe~V~v~I~k~kk~~~~a~ 67 (69)
T d1yvca1 16 GKEYEVTIEDMG-KGGDGIARID--GFVVFVP----------NAEKGSVINVKVTAVKEKFAFAE 67 (69)
T ss_dssp TCEEEEECCEEC-TTSCEEEEET--TEEEEET----------TCCTTCEEEEEEEEECSSCEEEE
T ss_pred CCEEEEEEEECC-CCCcEEEEEC--CEEEEeC----------CCCCCCEEEEEEEEecCCcEEEE
Confidence 345677888885 6899988875 2456642 13499999999998766544443
No 65
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.83 E-value=22 Score=21.53 Aligned_cols=20 Identities=20% Similarity=0.431 Sum_probs=14.5
Q ss_pred eEEE--EeeCCCCeeEEecCCC
Q 030905 9 GTVK--WFSAQKGFGFIAPEDG 28 (169)
Q Consensus 9 G~Vk--~~~~~kGfGFI~~~~~ 28 (169)
|.|+ .+..+|||+||+-++.
T Consensus 43 G~i~~v~i~~~kg~afV~f~~~ 64 (96)
T d1x4ga1 43 GQIMEIRVFPEKGYSFVRFSTH 64 (96)
T ss_dssp SCEEEEEEETTTTEEEEEESSH
T ss_pred CCceEEEEEecceEEEEEECCH
Confidence 5554 3567899999997753
No 66
>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=24.47 E-value=42 Score=20.19 Aligned_cols=48 Identities=10% Similarity=0.044 Sum_probs=29.0
Q ss_pred CCCCeeEEecCCCCccEEEEeeccccCCc----ccCCCCCEEEEEEeeCCCC
Q 030905 16 AQKGFGFIAPEDGGEDLFVHQTSIKSEGF----RTLSEGQTVEFSVDVGEDG 63 (169)
Q Consensus 16 ~~kGfGFI~~~~~~~dvF~H~s~i~~~~~----~~l~~G~~V~F~~~~~~kG 63 (169)
...+|||-........-.+.++.|...+. ..|++||+|...-...-.+
T Consensus 12 ~~~~lG~~i~g~~~~~~~v~I~~I~~g~~A~~~g~L~~GD~Il~INg~~v~~ 63 (95)
T d1n7ea_ 12 YGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKG 63 (95)
T ss_dssp TTSCCCEEEECCSSTTSCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTT
T ss_pred CCCcEeEEEEecccCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCC
Confidence 45789998875433343455566654331 2499999997654443333
No 67
>d2rdea1 b.45.2.1 (A:138-247) Hypothetical protein VCA0042, C-terminal domain {Vibrio cholerae O395 [TaxId: 345073]}
Probab=24.44 E-value=51 Score=20.94 Aligned_cols=31 Identities=29% Similarity=0.476 Sum_probs=23.0
Q ss_pred CCCeeEEecCCCCccEEEEeeccccCCcccCCCCCEEEEEEeeCCCC
Q 030905 17 QKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGEDG 63 (169)
Q Consensus 17 ~kGfGFI~~~~~~~dvF~H~s~i~~~~~~~l~~G~~V~F~~~~~~kG 63 (169)
.+|-=||+++-+ +++++|++|+.++.....|
T Consensus 28 ksGCrFvt~p~s----------------r~~qvgd~v~l~v~~~~~g 58 (110)
T d2rdea1 28 RSGCRFITPPLG----------------KTYQVGDLVALEIFSDLRG 58 (110)
T ss_dssp SSEEEEEECTTS----------------CCCCTTCEEEEEEBSSTTS
T ss_pred ccCceEEcCCCC----------------CceecCCeEEEEEEcCCCC
Confidence 456666666654 5689999999999876554
No 68
>d2e1ba1 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=23.90 E-value=56 Score=19.47 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=15.3
Q ss_pred ccEEEEeeccccCCcccCCCCCEEEEEE
Q 030905 30 EDLFVHQTSIKSEGFRTLSEGQTVEFSV 57 (169)
Q Consensus 30 ~dvF~H~s~i~~~~~~~l~~G~~V~F~~ 57 (169)
..+.+|+-+-. ..|++|+.|..+|
T Consensus 64 ~~~i~H~~~~~----~~l~vGd~V~~~I 87 (87)
T d2e1ba1 64 EGNVWHVVKEP----EKFKVGDEVELKI 87 (87)
T ss_dssp TCCCEEEESCG----GGCCSSSCEEEEE
T ss_pred CCEEEEEecCC----CCCCCCCEEEEEC
Confidence 45667775422 3578898887654
No 69
>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=23.34 E-value=32 Score=23.36 Aligned_cols=46 Identities=13% Similarity=0.194 Sum_probs=20.9
Q ss_pred EEecCCCCccEE-EEeeccccCCcccCCCCCEEEEEEeeCCCCceeE
Q 030905 22 FIAPEDGGEDLF-VHQTSIKSEGFRTLSEGQTVEFSVDVGEDGRTKA 67 (169)
Q Consensus 22 FI~~~~~~~dvF-~H~s~i~~~~~~~l~~G~~V~F~~~~~~kGr~~A 67 (169)
||...++.+++| +-+.++.....+.|..+........-.++|+..|
T Consensus 8 y~~~~~~~~~~~~l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IA 54 (269)
T d2hqsa1 8 YVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLA 54 (269)
T ss_dssp EEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEE
T ss_pred EEEEeCCCCceEEEEEEcCCCCCcEEEecCCCceeeeEECCCCCEEE
Confidence 566666555444 4555554443333333333333333444444333
No 70
>d1aoza1 b.6.1.3 (A:1-129) Ascorbate oxidase {Zucchini (Cucurbita pepo var. medullosa) [TaxId: 3663]}
Probab=22.34 E-value=39 Score=21.57 Aligned_cols=51 Identities=10% Similarity=0.117 Sum_probs=33.2
Q ss_pred EEEEeeCCCCeeEEecCCCCccEEEEeeccccCCcccCCCCCEEEEEEeeCC
Q 030905 10 TVKWFSAQKGFGFIAPEDGGEDLFVHQTSIKSEGFRTLSEGQTVEFSVDVGE 61 (169)
Q Consensus 10 ~Vk~~~~~kGfGFI~~~~~~~dvF~H~s~i~~~~~~~l~~G~~V~F~~~~~~ 61 (169)
+|..|.-+--++++.++.....++.---.+...- ..+.+||.|.+.+....
T Consensus 2 ~~~~~~~~v~~~~~~pdg~~~~~~~~NG~~PGP~-i~v~~GD~v~i~l~N~l 52 (129)
T d1aoza1 2 QIRHYKWEVEYMFWAPNCNENIVMGINGQFPGPT-IRANAGDSVVVELTNKL 52 (129)
T ss_dssp CEEEEEEEEEEEEECTTSSCEEEEEETTBSSCCC-EEEETTCEEEEEEEECC
T ss_pred cEEEEEEEEEEEEECCCCeEEEEEEECCCcCCCe-EEEECCcEEEEEEEeCC
Confidence 4566666667788888765445543333344433 35789999999988753
No 71
>d1ju3a1 b.18.1.13 (A:352-574) Bacterial cocaine esterase, C-terminal domain {Rhodococcus sp. mb1 [TaxId: 51612]}
Probab=21.46 E-value=1.2e+02 Score=20.79 Aligned_cols=37 Identities=14% Similarity=0.307 Sum_probs=25.0
Q ss_pred EecCCCCccEEEEeeccccCCc--------------------ccCCCCCEEEEEEee
Q 030905 23 IAPEDGGEDLFVHQTSIKSEGF--------------------RTLSEGQTVEFSVDV 59 (169)
Q Consensus 23 I~~~~~~~dvF~H~s~i~~~~~--------------------~~l~~G~~V~F~~~~ 59 (169)
|+.+....|+|+.+.++...+. ..+.+|+.|+++|+.
T Consensus 100 vs~~~~d~~l~v~l~dv~pdG~~~~it~G~l~~~~r~~~~~~~~~~pg~~~~l~i~l 156 (223)
T d1ju3a1 100 VSSSAVDTDFTAKLVDVFPDGRAIALCDGIVRMRYRETLVNPTLIEAGEIYEVAIDM 156 (223)
T ss_dssp EEESSSSCEEEEEEEEECTTSCEEEEEEEEEEGGGSSCSSSCCCCCTTCCEEEEEEE
T ss_pred EEccCCCcEEEEEEEEECCCCcEEEeccCceeeccccCcccccccCCCCEEEEEEEe
Confidence 4444445688888888865541 456778888888764
No 72
>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.24 E-value=6.7 Score=18.84 Aligned_cols=8 Identities=50% Similarity=0.820 Sum_probs=5.0
Q ss_pred CccCCCCC
Q 030905 160 GHFARDCP 167 (169)
Q Consensus 160 GH~ardCp 167 (169)
.|-||+|-
T Consensus 19 ehearncm 26 (28)
T d2dlqa2 19 EHEARNCM 26 (28)
T ss_dssp HHHHHCCC
T ss_pred HHHHHhhh
Confidence 46677764
No 73
>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.09 E-value=40 Score=20.01 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=25.6
Q ss_pred eCCCCeeEEecCCCCccEEEEeeccccCCc----ccCCCCCEEEEE
Q 030905 15 SAQKGFGFIAPEDGGEDLFVHQTSIKSEGF----RTLSEGQTVEFS 56 (169)
Q Consensus 15 ~~~kGfGFI~~~~~~~dvF~H~s~i~~~~~----~~l~~G~~V~F~ 56 (169)
++..+|||.........+|+. .|...+. -.|++||.|.-.
T Consensus 10 ~~~~~lG~~l~~~~~~~~~I~--~v~~gg~A~~~g~l~~GD~Il~I 53 (88)
T d1kwaa_ 10 NTDEPMGITLKMNELNHCIVA--RIMHGGMIHRQGTLHVGDEIREI 53 (88)
T ss_dssp CSSSCCCEEEECSCGGGEEEE--EECTTSHHHHHTCCCTTCEEEEE
T ss_pred CCCCCccEEEEEcCCCCEEEE--EECCCCHHHHcCCCccCcEEEEE
Confidence 466789998876544556554 4544331 258999999654
Done!