BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030906
         (169 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2FUK|A Chain A, Crystal Structure Of Xc6422 From Xanthomonas Campestris: A
           Member Of AB SERINE HYDROLASE WITHOUT LID AT 1.6
           Resolution
          Length = 220

 Score = 27.3 bits (59), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 10/13 (76%), Positives = 12/13 (92%)

Query: 2   WLVVQGTADEVVD 14
           WLV+QG ADE+VD
Sbjct: 158 WLVIQGDADEIVD 170


>pdb|2ZO9|B Chain B, Malonate-Bound Structure Of The Glycerophosphodiesterase
          From Enterobacter Aerogenes (Gpdq) And Characterization
          Of The Native Fe2+ Metal Ion Preference
 pdb|2ZO9|C Chain C, Malonate-Bound Structure Of The Glycerophosphodiesterase
          From Enterobacter Aerogenes (Gpdq) And Characterization
          Of The Native Fe2+ Metal Ion Preference
 pdb|2ZOA|A Chain A, Malonate-bound Structure Of The Glycerophosphodiesterase
          From Enterobacter Aerogenes (gpdq) Collected At 1.280
          Angstrom
 pdb|2ZOA|B Chain B, Malonate-bound Structure Of The Glycerophosphodiesterase
          From Enterobacter Aerogenes (gpdq) Collected At 1.280
          Angstrom
 pdb|3D03|A Chain A, 1.9a Structure Of Glycerophoshphodiesterase (Gpdq) From
          Enterobacter Aerogenes
 pdb|3D03|B Chain B, 1.9a Structure Of Glycerophoshphodiesterase (Gpdq) From
          Enterobacter Aerogenes
 pdb|3D03|C Chain C, 1.9a Structure Of Glycerophoshphodiesterase (Gpdq) From
          Enterobacter Aerogenes
 pdb|3D03|D Chain D, 1.9a Structure Of Glycerophoshphodiesterase (Gpdq) From
          Enterobacter Aerogenes
 pdb|3D03|E Chain E, 1.9a Structure Of Glycerophoshphodiesterase (Gpdq) From
          Enterobacter Aerogenes
 pdb|3D03|F Chain F, 1.9a Structure Of Glycerophoshphodiesterase (Gpdq) From
          Enterobacter Aerogenes
          Length = 274

 Score = 26.9 bits (58), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 13/22 (59%), Positives = 15/22 (68%)

Query: 31 PLWLKGGNHCDLELFPEYLRHL 52
          PL+L  GNH D  LF EYL+ L
Sbjct: 73 PLYLIPGNHDDKALFLEYLQPL 94


>pdb|2DXL|A Chain A, Glycerophosphodiesterase From Enterobacter Aerogenes
 pdb|2DXL|B Chain B, Glycerophosphodiesterase From Enterobacter Aerogenes
 pdb|2DXN|A Chain A, Glycerophosphodiesterase From Enterobacter Aerogenes
 pdb|2DXN|B Chain B, Glycerophosphodiesterase From Enterobacter Aerogenes
          Length = 274

 Score = 26.9 bits (58), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 13/22 (59%), Positives = 15/22 (68%)

Query: 31 PLWLKGGNHCDLELFPEYLRHL 52
          PL+L  GNH D  LF EYL+ L
Sbjct: 73 PLYLIPGNHDDKALFLEYLQPL 94


>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
          Length = 487

 Score = 26.2 bits (56), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 37/63 (58%), Gaps = 1/63 (1%)

Query: 103 TDRPEKLRLHEYKFNNMDKL-EKFRTSFDQMEKSRRSVDYHEKSRKSIDQQLERARKSVD 161
           T+R E  R ++ +   +D L E++RT  DQ+   +++    E+ +K++D+Q+   R++  
Sbjct: 325 TERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHA 384

Query: 162 WLD 164
            LD
Sbjct: 385 ELD 387


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.135    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,764,098
Number of Sequences: 62578
Number of extensions: 167730
Number of successful extensions: 359
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 354
Number of HSP's gapped (non-prelim): 17
length of query: 169
length of database: 14,973,337
effective HSP length: 92
effective length of query: 77
effective length of database: 9,216,161
effective search space: 709644397
effective search space used: 709644397
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)