Query 030907
Match_columns 169
No_of_seqs 118 out of 226
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 06:23:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030907.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030907hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07047 OPA3: Optic atrophy 3 100.0 1.5E-51 3.3E-56 319.5 17.3 133 4-136 1-134 (134)
2 KOG3335 Predicted coiled-coil 100.0 4E-47 8.7E-52 305.1 11.9 137 10-146 1-138 (181)
3 TIGR02209 ftsL_broad cell divi 95.6 0.23 4.9E-06 34.8 9.6 49 102-151 26-75 (85)
4 PRK00888 ftsB cell division pr 95.1 0.34 7.5E-06 36.2 9.6 51 101-151 28-79 (105)
5 PF04977 DivIC: Septum formati 93.7 0.3 6.4E-06 33.3 6.2 41 110-150 27-68 (80)
6 TIGR02976 phageshock_pspB phag 93.2 0.33 7.1E-06 34.6 5.8 32 120-152 41-72 (75)
7 PF10960 DUF2762: Protein of u 92.6 1.5 3.3E-05 30.8 8.3 21 86-106 14-34 (71)
8 PHA01750 hypothetical protein 91.6 3 6.5E-05 29.4 8.7 49 95-144 24-72 (75)
9 PF06103 DUF948: Bacterial pro 88.8 6.6 0.00014 27.8 9.8 55 86-140 5-59 (90)
10 PF11559 ADIP: Afadin- and alp 87.6 4.9 0.00011 31.0 8.3 52 94-145 39-90 (151)
11 PF06667 PspB: Phage shock pro 87.3 1.9 4.1E-05 30.7 5.2 32 120-152 41-72 (75)
12 PRK00888 ftsB cell division pr 86.9 5 0.00011 29.9 7.7 32 110-141 30-61 (105)
13 PF07047 OPA3: Optic atrophy 3 86.9 11 0.00024 29.1 9.8 65 75-142 69-133 (134)
14 cd00632 Prefoldin_beta Prefold 86.3 6.3 0.00014 28.8 7.8 28 113-140 76-103 (105)
15 PF15361 RIC3: Resistance to i 85.8 0.55 1.2E-05 37.4 2.0 70 77-146 78-149 (152)
16 PF10805 DUF2730: Protein of u 85.6 7.6 0.00016 28.9 8.1 15 87-101 16-30 (106)
17 PF06295 DUF1043: Protein of u 85.3 8.1 0.00018 29.6 8.3 14 132-145 61-74 (128)
18 PF11853 DUF3373: Protein of u 84.4 1.6 3.5E-05 40.9 4.8 44 113-156 30-73 (489)
19 PRK04654 sec-independent trans 83.4 18 0.00038 30.7 10.1 59 81-139 6-79 (214)
20 KOG4571 Activating transcripti 83.4 4.4 9.6E-05 35.7 6.7 46 102-147 243-288 (294)
21 PF04568 IATP: Mitochondrial A 82.7 8.7 0.00019 28.7 7.2 31 114-144 69-99 (100)
22 PF07716 bZIP_2: Basic region 82.1 11 0.00024 24.4 7.0 31 112-142 23-53 (54)
23 PF00170 bZIP_1: bZIP transcri 81.2 13 0.00029 24.7 7.7 34 112-145 24-57 (64)
24 COG1382 GimC Prefoldin, chaper 80.7 13 0.00028 28.8 7.7 38 110-147 73-110 (119)
25 smart00338 BRLZ basic region l 80.7 14 0.0003 24.6 7.3 33 113-145 25-57 (65)
26 PF14142 YrzO: YrzO-like prote 80.7 7.7 0.00017 24.8 5.3 29 84-112 6-34 (46)
27 PF04977 DivIC: Septum formati 80.6 4.9 0.00011 27.2 4.9 28 113-140 23-50 (80)
28 PRK09458 pspB phage shock prot 79.4 4.3 9.2E-05 29.0 4.3 31 121-152 42-72 (75)
29 TIGR02338 gimC_beta prefoldin, 79.0 11 0.00024 27.8 6.8 36 111-146 71-106 (110)
30 PRK09343 prefoldin subunit bet 78.6 15 0.00033 27.8 7.5 58 83-146 53-110 (121)
31 TIGR02209 ftsL_broad cell divi 78.0 20 0.00043 24.7 8.3 29 113-141 30-58 (85)
32 PF04999 FtsL: Cell division p 77.9 22 0.00049 25.3 9.6 34 115-149 50-84 (97)
33 KOG3119 Basic region leucine z 77.6 11 0.00023 32.5 7.2 36 111-146 212-247 (269)
34 PF06210 DUF1003: Protein of u 77.3 28 0.00061 26.2 8.7 52 88-139 47-98 (108)
35 PF00430 ATP-synt_B: ATP synth 77.2 24 0.00051 25.9 8.2 26 79-104 1-26 (132)
36 PF05659 RPW8: Arabidopsis bro 77.1 34 0.00073 26.9 9.5 63 82-145 3-76 (147)
37 PRK10803 tol-pal system protei 76.5 29 0.00063 29.6 9.5 35 111-145 58-92 (263)
38 PF04156 IncA: IncA protein; 75.2 25 0.00053 27.9 8.3 30 115-144 82-111 (191)
39 PRK11677 hypothetical protein; 75.1 31 0.00066 27.1 8.5 16 130-145 63-78 (134)
40 PRK09174 F0F1 ATP synthase sub 74.7 47 0.001 27.4 11.8 33 65-100 44-76 (204)
41 smart00338 BRLZ basic region l 74.5 22 0.00048 23.6 7.3 35 110-144 29-63 (65)
42 PF10960 DUF2762: Protein of u 74.2 27 0.00059 24.5 7.7 48 88-135 13-60 (71)
43 COG4839 FtsL Protein required 73.9 32 0.0007 26.6 8.2 32 111-142 64-95 (120)
44 PRK00295 hypothetical protein; 73.7 17 0.00036 25.1 6.0 36 113-148 18-53 (68)
45 PF11382 DUF3186: Protein of u 73.4 17 0.00037 31.8 7.5 56 87-146 16-71 (308)
46 PF06305 DUF1049: Protein of u 73.0 21 0.00045 23.6 6.3 9 86-94 29-37 (68)
47 PF11460 DUF3007: Protein of u 72.9 15 0.00032 27.8 6.0 29 78-106 34-62 (104)
48 PHA02047 phage lambda Rz1-like 72.1 39 0.00085 25.4 9.6 49 97-145 24-76 (101)
49 PRK03100 sec-independent trans 71.9 39 0.00085 26.6 8.4 59 81-142 7-71 (136)
50 PHA01750 hypothetical protein 71.6 33 0.00071 24.2 8.2 54 85-138 17-73 (75)
51 PRK04406 hypothetical protein; 70.8 23 0.0005 24.9 6.3 32 116-147 27-58 (75)
52 PRK01919 tatB sec-independent 70.8 45 0.00097 27.3 8.7 15 81-95 6-20 (169)
53 PF10883 DUF2681: Protein of u 70.7 39 0.00084 24.7 8.7 46 87-140 11-56 (87)
54 KOG3119 Basic region leucine z 69.5 22 0.00049 30.6 7.2 49 98-146 206-254 (269)
55 PRK06231 F0F1 ATP synthase sub 69.4 63 0.0014 26.6 10.9 41 64-104 31-75 (205)
56 PF11471 Sugarporin_N: Maltopo 69.1 19 0.00042 24.4 5.4 30 112-141 30-59 (60)
57 COG2919 Septum formation initi 69.0 47 0.001 25.0 9.2 36 111-146 61-96 (117)
58 PF10828 DUF2570: Protein of u 68.8 45 0.00098 24.7 9.4 17 84-100 10-26 (110)
59 PF07716 bZIP_2: Basic region 68.6 29 0.00062 22.4 6.0 24 111-134 29-52 (54)
60 PF06295 DUF1043: Protein of u 68.6 50 0.0011 25.2 9.3 14 85-98 6-19 (128)
61 PRK02119 hypothetical protein; 68.3 26 0.00057 24.5 6.1 34 114-147 23-56 (73)
62 PF00170 bZIP_1: bZIP transcri 68.3 32 0.00069 22.8 7.5 33 111-143 30-62 (64)
63 KOG1760 Molecular chaperone Pr 68.3 27 0.00058 27.4 6.6 44 112-156 86-129 (131)
64 PRK00846 hypothetical protein; 68.2 32 0.00068 24.6 6.6 35 114-148 27-61 (77)
65 PF04102 SlyX: SlyX; InterPro 68.0 28 0.00062 23.8 6.2 27 119-145 16-42 (69)
66 PRK07352 F0F1 ATP synthase sub 67.8 59 0.0013 25.7 10.9 26 79-104 21-46 (174)
67 PF06667 PspB: Phage shock pro 67.7 16 0.00034 26.0 4.9 51 88-138 16-66 (75)
68 PRK00708 sec-independent trans 67.3 76 0.0016 26.8 9.7 15 81-95 6-20 (209)
69 PRK13453 F0F1 ATP synthase sub 67.2 62 0.0013 25.7 10.9 27 78-104 19-45 (173)
70 PRK14472 F0F1 ATP synthase sub 67.0 61 0.0013 25.6 11.2 28 77-104 18-45 (175)
71 PRK05759 F0F1 ATP synthase sub 66.9 55 0.0012 25.0 11.0 59 78-136 5-64 (156)
72 COG0711 AtpF F0F1-type ATP syn 66.5 63 0.0014 25.5 10.8 59 79-137 8-67 (161)
73 PF08763 Ca_chan_IQ: Voltage g 66.4 6.7 0.00015 24.2 2.4 20 89-108 9-28 (35)
74 PRK08475 F0F1 ATP synthase sub 66.3 64 0.0014 25.6 10.5 27 78-104 23-49 (167)
75 PF05377 FlaC_arch: Flagella a 66.0 31 0.00068 23.2 5.8 34 112-145 5-38 (55)
76 PF04102 SlyX: SlyX; InterPro 65.5 20 0.00043 24.6 5.0 38 111-148 15-52 (69)
77 PRK00736 hypothetical protein; 64.5 34 0.00074 23.5 6.0 35 113-147 18-52 (68)
78 PRK04325 hypothetical protein; 64.5 32 0.0007 24.0 6.0 33 115-147 24-56 (74)
79 PF11932 DUF3450: Protein of u 64.4 46 0.00099 27.9 8.0 7 133-139 82-88 (251)
80 PF14584 DUF4446: Protein of u 64.3 71 0.0015 25.3 10.8 34 113-146 45-78 (151)
81 PRK02793 phi X174 lysis protei 64.1 36 0.00077 23.7 6.1 33 115-147 23-55 (72)
82 KOG4253 Tryptophan-rich basic 63.8 24 0.00051 28.9 5.8 38 83-120 15-57 (175)
83 COG1862 YajC Preprotein transl 63.7 11 0.00023 28.1 3.6 34 78-111 6-39 (97)
84 PRK11637 AmiB activator; Provi 63.6 43 0.00094 30.2 8.2 26 119-144 101-126 (428)
85 PF06720 Phi-29_GP16_7: Bacter 63.3 2.7 5.8E-05 32.5 0.3 64 87-157 7-70 (130)
86 PRK13428 F0F1 ATP synthase sub 63.0 1.1E+02 0.0024 28.1 10.8 27 78-104 2-28 (445)
87 COG3879 Uncharacterized protei 62.7 43 0.00093 29.0 7.5 31 111-141 54-84 (247)
88 PRK00846 hypothetical protein; 62.7 39 0.00083 24.2 6.1 27 120-146 26-52 (77)
89 PRK09458 pspB phage shock prot 62.3 23 0.00051 25.3 4.9 51 88-138 16-66 (75)
90 PRK13729 conjugal transfer pil 62.2 34 0.00074 32.2 7.3 26 121-146 97-122 (475)
91 PRK00736 hypothetical protein; 62.1 40 0.00086 23.2 6.0 33 114-146 12-44 (68)
92 PRK00295 hypothetical protein; 62.0 40 0.00087 23.2 6.0 33 115-147 13-45 (68)
93 PRK00182 tatB sec-independent 61.1 80 0.0017 25.6 8.4 16 81-96 7-22 (160)
94 PF02183 HALZ: Homeobox associ 60.8 40 0.00087 21.5 5.4 34 112-145 10-43 (45)
95 TIGR02894 DNA_bind_RsfA transc 60.5 78 0.0017 25.7 8.2 35 111-145 108-142 (161)
96 PF10186 Atg14: UV radiation r 60.0 62 0.0013 26.8 8.0 36 111-146 67-102 (302)
97 KOG4571 Activating transcripti 59.8 40 0.00086 29.9 6.9 37 109-145 243-279 (294)
98 PRK04325 hypothetical protein; 59.8 44 0.00096 23.3 6.0 31 117-147 19-49 (74)
99 PRK10920 putative uroporphyrin 59.7 1.3E+02 0.0029 27.4 10.6 24 123-146 101-124 (390)
100 PF04568 IATP: Mitochondrial A 59.4 28 0.00061 26.0 5.2 27 112-138 70-100 (100)
101 COG2900 SlyX Uncharacterized p 59.2 57 0.0012 23.1 6.4 38 110-147 18-55 (72)
102 COG3750 Uncharacterized protei 58.6 40 0.00087 24.5 5.6 37 113-149 13-49 (85)
103 PF04111 APG6: Autophagy prote 58.5 56 0.0012 28.7 7.7 31 110-140 60-90 (314)
104 PRK13461 F0F1 ATP synthase sub 57.9 86 0.0019 24.2 11.1 27 78-104 6-32 (159)
105 TIGR03321 alt_F1F0_F0_B altern 57.6 1.1E+02 0.0025 25.5 11.0 27 78-104 6-32 (246)
106 PF04380 BMFP: Membrane fusoge 57.3 27 0.00059 24.6 4.6 30 113-142 49-78 (79)
107 TIGR02338 gimC_beta prefoldin, 56.8 46 0.001 24.5 6.0 57 83-140 49-107 (110)
108 PF09340 NuA4: Histone acetylt 56.7 24 0.00051 25.1 4.2 45 114-158 2-52 (80)
109 PF10073 DUF2312: Uncharacteri 56.7 46 0.001 23.7 5.6 36 114-149 4-39 (74)
110 PRK13455 F0F1 ATP synthase sub 56.6 1E+02 0.0022 24.6 10.1 23 77-100 27-49 (184)
111 COG3879 Uncharacterized protei 56.6 1.3E+02 0.0029 26.0 9.8 20 115-134 65-84 (247)
112 PRK09343 prefoldin subunit bet 55.8 62 0.0013 24.5 6.7 36 110-145 81-116 (121)
113 PRK09510 tolA cell envelope in 55.1 61 0.0013 29.7 7.6 52 91-142 57-108 (387)
114 PRK14473 F0F1 ATP synthase sub 55.1 99 0.0021 24.0 10.9 27 78-104 9-35 (164)
115 PF12732 YtxH: YtxH-like prote 55.0 65 0.0014 21.9 8.8 55 84-139 4-59 (74)
116 PF10046 BLOC1_2: Biogenesis o 55.0 48 0.001 24.1 5.8 33 113-145 65-97 (99)
117 PF13863 DUF4200: Domain of un 54.8 76 0.0017 23.3 7.0 30 111-140 78-107 (126)
118 cd00890 Prefoldin Prefoldin is 54.7 57 0.0012 23.8 6.2 36 111-146 91-126 (129)
119 PRK14127 cell division protein 54.0 47 0.001 25.2 5.7 32 114-145 37-68 (109)
120 PRK13694 hypothetical protein; 53.6 58 0.0013 23.7 5.8 37 113-149 11-47 (83)
121 KOG1029 Endocytic adaptor prot 53.1 45 0.00098 33.7 6.7 6 45-50 255-260 (1118)
122 PRK14471 F0F1 ATP synthase sub 52.7 1.1E+02 0.0023 23.8 11.0 27 78-104 9-35 (164)
123 PRK14474 F0F1 ATP synthase sub 52.4 1.5E+02 0.0032 25.2 11.1 27 78-104 6-32 (250)
124 PRK02119 hypothetical protein; 51.9 79 0.0017 22.0 6.6 33 115-147 17-49 (73)
125 PRK04406 hypothetical protein; 51.2 83 0.0018 22.1 7.2 29 119-147 23-51 (75)
126 PRK02793 phi X174 lysis protei 51.1 81 0.0017 21.9 6.6 31 117-147 18-48 (72)
127 PF08657 DASH_Spc34: DASH comp 51.0 55 0.0012 28.2 6.3 34 114-147 180-213 (259)
128 PF05529 Bap31: B-cell recepto 51.0 44 0.00095 26.8 5.5 26 115-140 162-187 (192)
129 PF06120 Phage_HK97_TLTM: Tail 51.0 1.8E+02 0.0039 25.8 10.0 25 120-144 80-104 (301)
130 cd00632 Prefoldin_beta Prefold 51.0 72 0.0016 23.1 6.2 37 110-146 66-102 (105)
131 PF01920 Prefoldin_2: Prefoldi 50.9 75 0.0016 22.3 6.2 35 112-146 67-101 (106)
132 PRK04778 septation ring format 50.8 1.1E+02 0.0024 28.9 8.8 44 111-154 401-444 (569)
133 PF14193 DUF4315: Domain of un 50.8 70 0.0015 23.1 5.9 16 108-123 16-31 (83)
134 PRK13729 conjugal transfer pil 50.7 81 0.0017 29.8 7.7 25 116-140 99-123 (475)
135 PF12335 SBF2: Myotubularin pr 50.3 65 0.0014 27.3 6.6 74 6-79 109-190 (225)
136 PRK00404 tatB sec-independent 50.2 1.2E+02 0.0026 24.1 7.6 16 81-96 6-21 (141)
137 PF04508 Pox_A_type_inc: Viral 50.2 21 0.00045 20.0 2.4 12 132-143 5-16 (23)
138 PF14163 SieB: Superinfection 49.9 95 0.0021 23.9 7.1 28 67-94 22-49 (151)
139 PRK11239 hypothetical protein; 49.6 32 0.0007 29.1 4.6 30 115-144 184-213 (215)
140 TIGR00293 prefoldin, archaeal 49.5 87 0.0019 23.1 6.6 35 111-145 90-124 (126)
141 PRK13460 F0F1 ATP synthase sub 49.3 1.3E+02 0.0028 23.7 11.0 26 79-104 18-43 (173)
142 PF09457 RBD-FIP: FIP domain ; 49.0 60 0.0013 21.1 4.8 30 117-146 3-32 (48)
143 PF10224 DUF2205: Predicted co 48.6 83 0.0018 22.6 6.0 33 113-145 29-61 (80)
144 TIGR00739 yajC preprotein tran 48.5 26 0.00056 25.1 3.4 24 86-109 8-31 (84)
145 PF06160 EzrA: Septation ring 48.4 1.1E+02 0.0025 28.8 8.5 46 108-153 394-439 (560)
146 PF08317 Spc7: Spc7 kinetochor 48.1 1.5E+02 0.0031 26.0 8.7 36 3-38 67-110 (325)
147 PRK11677 hypothetical protein; 48.1 1.3E+02 0.0029 23.5 9.1 14 85-98 10-23 (134)
148 smart00787 Spc7 Spc7 kinetocho 47.6 1.2E+02 0.0027 26.7 8.1 36 3-38 62-105 (312)
149 PF05278 PEARLI-4: Arabidopsis 47.1 1.5E+02 0.0033 25.9 8.4 33 113-145 206-238 (269)
150 PRK10884 SH3 domain-containing 47.0 1.3E+02 0.0028 25.0 7.8 31 114-144 132-162 (206)
151 PF04799 Fzo_mitofusin: fzo-li 46.9 56 0.0012 26.7 5.4 23 124-146 123-145 (171)
152 PF11853 DUF3373: Protein of u 46.6 17 0.00037 34.2 2.7 30 115-145 26-55 (489)
153 PF12097 DUF3573: Protein of u 46.6 59 0.0013 29.7 5.9 24 120-143 41-64 (383)
154 PF12709 Kinetocho_Slk19: Cent 46.5 59 0.0013 23.8 5.0 28 112-139 47-74 (87)
155 PF07889 DUF1664: Protein of u 46.5 1.4E+02 0.003 23.2 7.4 29 119-147 87-115 (126)
156 cd00584 Prefoldin_alpha Prefol 46.4 1.1E+02 0.0024 22.7 6.7 36 111-146 91-126 (129)
157 PF10805 DUF2730: Protein of u 46.0 1.2E+02 0.0026 22.4 8.5 24 87-110 13-36 (106)
158 KOG1853 LIS1-interacting prote 46.0 1.2E+02 0.0026 26.8 7.6 28 116-143 93-120 (333)
159 PF10168 Nup88: Nuclear pore c 45.8 3.1E+02 0.0067 27.1 11.6 64 77-140 537-605 (717)
160 PF13600 DUF4140: N-terminal d 45.6 68 0.0015 23.0 5.3 30 115-144 71-100 (104)
161 COG4026 Uncharacterized protei 45.6 1.2E+02 0.0025 26.4 7.3 31 115-145 157-187 (290)
162 COG3105 Uncharacterized protei 45.4 1.5E+02 0.0033 23.4 8.5 54 84-140 14-67 (138)
163 PF14774 FAM177: FAM177 family 45.4 22 0.00048 27.5 2.8 33 76-108 79-116 (123)
164 COG3883 Uncharacterized protei 45.3 96 0.0021 27.1 7.0 21 124-144 83-103 (265)
165 COG4026 Uncharacterized protei 44.8 1.6E+02 0.0034 25.7 8.0 22 119-140 154-175 (290)
166 PF09006 Surfac_D-trimer: Lung 44.7 86 0.0019 20.4 5.0 28 117-144 2-29 (46)
167 PRK05689 fliJ flagellar biosyn 44.6 1.2E+02 0.0027 22.9 6.9 45 108-152 17-61 (147)
168 KOG4460 Nuclear pore complex, 44.4 1.2E+02 0.0026 29.6 7.9 53 87-139 575-627 (741)
169 PF00038 Filament: Intermediat 44.3 1.7E+02 0.0038 24.7 8.4 33 113-145 215-247 (312)
170 TIGR01711 gspJ general secreti 44.0 1.7E+02 0.0037 23.6 8.5 53 79-132 7-59 (192)
171 PF02996 Prefoldin: Prefoldin 43.9 81 0.0017 22.9 5.6 33 113-145 83-115 (120)
172 PF12072 DUF3552: Domain of un 43.9 1.8E+02 0.0038 23.7 10.6 7 88-94 13-19 (201)
173 PRK10722 hypothetical protein; 43.7 1.4E+02 0.003 25.9 7.5 55 93-147 144-212 (247)
174 PRK02201 putative inner membra 43.7 1.8E+02 0.004 26.3 8.7 73 76-148 129-201 (357)
175 PF05545 FixQ: Cbb3-type cytoc 43.4 60 0.0013 20.5 4.2 32 73-104 5-36 (49)
176 COG4477 EzrA Negative regulato 43.3 1.6E+02 0.0036 28.3 8.6 56 97-152 385-441 (570)
177 COG3074 Uncharacterized protei 42.8 70 0.0015 22.8 4.7 12 123-134 48-59 (79)
178 COG2433 Uncharacterized conser 42.7 1.1E+02 0.0025 29.8 7.6 23 122-144 482-504 (652)
179 PRK10884 SH3 domain-containing 42.7 1.1E+02 0.0024 25.4 6.8 34 111-144 136-169 (206)
180 PF04420 CHD5: CHD5-like prote 42.6 1E+02 0.0022 24.4 6.2 19 126-144 71-89 (161)
181 TIGR03185 DNA_S_dndD DNA sulfu 42.5 1.4E+02 0.0029 28.6 8.2 33 117-149 226-258 (650)
182 PF11285 DUF3086: Protein of u 42.4 76 0.0016 27.9 5.8 31 116-146 6-36 (283)
183 PRK15422 septal ring assembly 42.3 63 0.0014 23.3 4.5 17 113-129 24-40 (79)
184 KOG2264 Exostosin EXT1L [Signa 42.1 1.1E+02 0.0023 30.2 7.2 30 108-137 101-130 (907)
185 KOG2094 Predicted DNA damage i 41.6 1E+02 0.0022 28.7 6.7 35 93-127 40-77 (490)
186 cd00584 Prefoldin_alpha Prefol 41.6 1.1E+02 0.0024 22.7 6.1 32 113-144 12-43 (129)
187 COG3937 Uncharacterized conser 41.2 1.6E+02 0.0035 22.5 6.8 7 68-74 39-45 (108)
188 PRK09039 hypothetical protein; 41.1 1.7E+02 0.0037 26.0 8.1 23 119-141 156-178 (343)
189 PF05529 Bap31: B-cell recepto 40.9 1.8E+02 0.004 23.1 10.5 29 117-145 157-185 (192)
190 TIGR02473 flagell_FliJ flagell 40.9 1.5E+02 0.0032 21.9 6.7 44 108-151 14-57 (141)
191 PF02096 60KD_IMP: 60Kd inner 40.8 1.8E+02 0.004 23.0 9.2 60 84-149 7-66 (198)
192 PRK03947 prefoldin subunit alp 40.8 1.2E+02 0.0026 22.9 6.3 32 114-145 101-132 (140)
193 PRK07720 fliJ flagellar biosyn 40.8 1.5E+02 0.0032 22.6 6.8 45 108-152 17-61 (146)
194 PF06156 DUF972: Protein of un 40.6 98 0.0021 23.2 5.6 31 114-144 22-52 (107)
195 PF04880 NUDE_C: NUDE protein, 40.6 36 0.00078 27.6 3.4 24 114-137 24-47 (166)
196 PF15456 Uds1: Up-regulated Du 40.5 96 0.0021 23.9 5.6 33 113-145 80-112 (124)
197 TIGR01834 PHA_synth_III_E poly 40.2 53 0.0011 29.4 4.7 24 122-145 290-313 (320)
198 PF01486 K-box: K-box region; 40.2 72 0.0016 22.9 4.7 33 107-139 68-100 (100)
199 PF14389 Lzipper-MIP1: Leucine 40.1 75 0.0016 22.8 4.7 34 114-147 8-41 (88)
200 COG2900 SlyX Uncharacterized p 40.0 82 0.0018 22.3 4.7 23 123-145 24-46 (72)
201 PF10146 zf-C4H2: Zinc finger- 39.9 2.2E+02 0.0048 24.1 8.3 11 142-152 99-110 (230)
202 PF15397 DUF4618: Domain of un 39.9 1.9E+02 0.0042 25.1 8.0 68 75-145 38-105 (258)
203 PF07439 DUF1515: Protein of u 39.9 88 0.0019 24.0 5.2 34 111-144 37-70 (112)
204 PF05557 MAD: Mitotic checkpoi 39.8 80 0.0017 30.6 6.2 43 113-155 502-544 (722)
205 TIGR00293 prefoldin, archaeal 38.9 1.3E+02 0.0028 22.2 6.0 31 115-145 7-37 (126)
206 PRK05585 yajC preprotein trans 38.9 58 0.0012 24.3 4.1 29 80-108 17-45 (106)
207 PRK06531 yajC preprotein trans 38.3 39 0.00085 25.7 3.1 22 87-109 9-30 (113)
208 PF02699 YajC: Preprotein tran 38.3 32 0.0007 24.3 2.5 25 84-108 5-29 (82)
209 PF10112 Halogen_Hydrol: 5-bro 38.0 1.3E+02 0.0028 24.2 6.3 18 79-97 32-49 (199)
210 KOG4403 Cell surface glycoprot 37.7 2E+02 0.0043 27.3 8.1 25 95-119 230-254 (575)
211 PF09738 DUF2051: Double stran 37.5 2.4E+02 0.0052 24.9 8.4 36 115-150 141-176 (302)
212 TIGR02977 phageshock_pspA phag 37.4 1.7E+02 0.0037 24.1 7.1 23 118-140 110-132 (219)
213 PF07412 Geminin: Geminin; In 37.3 1.3E+02 0.0027 25.3 6.2 48 97-144 107-155 (200)
214 PF06216 RTBV_P46: Rice tungro 37.2 1.1E+02 0.0024 27.1 6.1 34 113-146 77-110 (389)
215 COG4420 Predicted membrane pro 37.2 2.5E+02 0.0053 23.5 8.1 59 88-146 101-166 (191)
216 cd00890 Prefoldin Prefoldin is 37.0 1.3E+02 0.0027 21.9 5.7 34 107-140 94-127 (129)
217 TIGR02894 DNA_bind_RsfA transc 36.9 2.1E+02 0.0046 23.2 7.3 34 111-144 115-148 (161)
218 PF07106 TBPIP: Tat binding pr 36.9 92 0.002 24.4 5.2 36 111-146 97-134 (169)
219 TIGR00185 rRNA_methyl_2 rRNA m 36.9 25 0.00054 27.4 1.9 22 83-104 128-149 (153)
220 COG1730 GIM5 Predicted prefold 36.6 1.4E+02 0.003 23.7 6.1 30 115-144 102-131 (145)
221 CHL00019 atpF ATP synthase CF0 36.1 2.2E+02 0.0048 22.6 10.7 25 80-104 27-51 (184)
222 COG1730 GIM5 Predicted prefold 36.0 1E+02 0.0022 24.4 5.3 31 115-145 14-44 (145)
223 PRK06975 bifunctional uroporph 36.0 4.1E+02 0.009 25.7 10.9 31 116-146 380-410 (656)
224 KOG4196 bZIP transcription fac 35.8 2E+02 0.0044 22.7 6.7 28 119-146 86-113 (135)
225 PF10211 Ax_dynein_light: Axon 35.6 2.4E+02 0.0052 22.9 8.3 28 115-142 128-155 (189)
226 PF06698 DUF1192: Protein of u 35.5 75 0.0016 21.6 3.8 22 124-145 24-45 (59)
227 KOG2264 Exostosin EXT1L [Signa 35.4 94 0.002 30.6 5.7 55 88-144 90-144 (907)
228 cd04779 HTH_MerR-like_sg4 Heli 35.0 2E+02 0.0043 22.1 6.7 34 112-145 79-112 (134)
229 COG4736 CcoQ Cbb3-type cytochr 34.9 1.3E+02 0.0029 20.5 5.0 37 73-109 5-41 (60)
230 PRK03947 prefoldin subunit alp 34.9 1.6E+02 0.0035 22.2 6.1 37 107-143 101-137 (140)
231 KOG4403 Cell surface glycoprot 34.5 2.5E+02 0.0054 26.7 8.2 30 81-110 219-248 (575)
232 PF12329 TMF_DNA_bd: TATA elem 34.4 1.6E+02 0.0034 20.5 7.2 32 111-142 30-61 (74)
233 COG3883 Uncharacterized protei 34.4 3.1E+02 0.0067 24.0 8.4 26 115-140 53-78 (265)
234 PRK06568 F0F1 ATP synthase sub 34.2 2.4E+02 0.0052 22.4 10.1 57 79-135 6-63 (154)
235 PF14723 SSFA2_C: Sperm-specif 34.2 1.4E+02 0.003 24.7 5.8 10 45-54 53-62 (179)
236 PF05377 FlaC_arch: Flagella a 34.0 1.1E+02 0.0025 20.5 4.5 32 113-144 13-44 (55)
237 PRK05886 yajC preprotein trans 33.8 96 0.0021 23.5 4.6 19 87-105 10-28 (109)
238 PF10473 CENP-F_leu_zip: Leuci 33.8 2E+02 0.0043 22.7 6.5 33 113-145 72-104 (140)
239 PF06698 DUF1192: Protein of u 33.8 69 0.0015 21.7 3.5 26 115-140 22-47 (59)
240 TIGR01404 FlhB_rel_III type II 33.7 2.9E+02 0.0063 24.6 8.4 29 66-94 167-195 (342)
241 KOG0709 CREB/ATF family transc 33.3 96 0.0021 29.2 5.4 29 118-146 290-318 (472)
242 PF11932 DUF3450: Protein of u 33.3 2.9E+02 0.0062 23.0 9.6 32 113-144 48-79 (251)
243 PF08941 USP8_interact: USP8 i 33.2 14 0.00031 30.4 0.0 40 111-150 8-47 (179)
244 cd04776 HTH_GnyR Helix-Turn-He 33.2 2E+02 0.0044 21.3 6.5 26 114-139 87-112 (118)
245 PRK01770 sec-independent trans 33.2 2.7E+02 0.0059 22.7 8.4 16 81-96 6-21 (171)
246 PF02996 Prefoldin: Prefoldin 33.1 1.5E+02 0.0033 21.3 5.6 34 108-141 85-118 (120)
247 TIGR01242 26Sp45 26S proteasom 33.0 1.4E+02 0.003 26.1 6.2 31 116-146 8-38 (364)
248 PRK13169 DNA replication intia 32.8 1.5E+02 0.0032 22.4 5.5 18 123-140 38-55 (110)
249 TIGR03142 cytochro_ccmI cytoch 32.6 2E+02 0.0043 21.4 6.2 14 89-102 12-25 (117)
250 PF04728 LPP: Lipoprotein leuc 32.3 1.6E+02 0.0035 19.8 6.5 33 108-140 4-36 (56)
251 PF13600 DUF4140: N-terminal d 32.3 1.1E+02 0.0024 21.9 4.6 32 109-140 72-103 (104)
252 PRK15418 transcriptional regul 32.2 30 0.00064 30.3 1.8 85 16-102 41-134 (318)
253 CHL00118 atpG ATP synthase CF0 32.2 2.4E+02 0.0052 21.8 10.9 27 78-104 23-49 (156)
254 PF12718 Tropomyosin_1: Tropom 32.1 2.4E+02 0.0053 21.9 7.5 33 113-145 34-66 (143)
255 PRK13922 rod shape-determining 32.1 3.1E+02 0.0066 23.0 11.6 29 117-145 79-110 (276)
256 PF12329 TMF_DNA_bd: TATA elem 32.0 1.8E+02 0.0038 20.2 8.1 35 111-145 37-71 (74)
257 COG2433 Uncharacterized conser 31.9 1.7E+02 0.0038 28.6 6.9 33 112-144 479-511 (652)
258 PRK10358 putative rRNA methyla 31.8 38 0.00082 26.7 2.2 20 83-102 129-148 (157)
259 PRK14127 cell division protein 31.7 2.2E+02 0.0048 21.5 6.3 30 116-145 32-61 (109)
260 PF11683 DUF3278: Protein of u 31.7 2.3E+02 0.0049 21.5 6.5 42 48-94 6-50 (129)
261 KOG3335 Predicted coiled-coil 31.7 65 0.0014 26.6 3.6 74 72-145 68-144 (181)
262 PRK10636 putative ABC transpor 31.5 1.3E+02 0.0029 28.7 6.2 31 116-146 558-588 (638)
263 COG4795 PulJ Type II secretory 31.4 3E+02 0.0065 22.8 8.4 45 82-127 16-60 (194)
264 cd04776 HTH_GnyR Helix-Turn-He 31.3 2.2E+02 0.0048 21.1 6.3 32 114-145 80-111 (118)
265 PRK10803 tol-pal system protei 31.1 1.6E+02 0.0034 25.1 6.1 36 109-144 63-98 (263)
266 TIGR03592 yidC_oxa1_cterm memb 31.0 2.7E+02 0.0059 22.1 9.2 40 85-124 7-46 (181)
267 COG3167 PilO Tfp pilus assembl 30.7 3.3E+02 0.0072 23.0 8.3 16 129-144 74-89 (211)
268 PF06810 Phage_GP20: Phage min 30.7 2.3E+02 0.0051 22.3 6.6 25 114-138 41-68 (155)
269 PF04380 BMFP: Membrane fusoge 30.7 82 0.0018 22.1 3.6 26 120-145 49-74 (79)
270 TIGR02680 conserved hypothetic 30.6 1.6E+02 0.0034 31.1 7.0 39 107-145 735-773 (1353)
271 PRK11081 tRNA guanosine-2'-O-m 30.6 40 0.00086 28.4 2.3 22 83-104 146-167 (229)
272 PF04678 DUF607: Protein of un 30.3 2.1E+02 0.0046 22.9 6.4 28 117-144 60-87 (180)
273 COG4238 Murein lipoprotein [Ce 30.3 2.1E+02 0.0045 20.6 7.3 29 111-139 29-57 (78)
274 PF08946 Osmo_CC: Osmosensory 30.2 1E+02 0.0022 20.0 3.6 24 113-136 11-34 (46)
275 PF02388 FemAB: FemAB family; 30.2 3.1E+02 0.0066 24.7 8.0 28 121-148 273-300 (406)
276 PF06103 DUF948: Bacterial pro 30.2 1.9E+02 0.0042 20.1 9.9 25 111-135 37-61 (90)
277 PF10018 Med4: Vitamin-D-recep 30.2 2.8E+02 0.006 22.3 7.1 35 111-145 26-60 (188)
278 COG1382 GimC Prefoldin, chaper 30.1 1.9E+02 0.0042 22.3 5.8 34 107-140 77-110 (119)
279 PF05667 DUF812: Protein of un 30.1 1.6E+02 0.0034 28.5 6.4 31 111-141 325-355 (594)
280 PF09849 DUF2076: Uncharacteri 30.1 1.7E+02 0.0037 25.2 6.0 26 119-144 46-71 (247)
281 PRK06835 DNA replication prote 30.0 3.9E+02 0.0084 23.6 8.8 24 127-150 64-91 (329)
282 PF08285 DPM3: Dolichol-phosph 29.9 2.1E+02 0.0045 20.9 5.7 21 85-105 46-67 (91)
283 TIGR00634 recN DNA repair prot 29.8 1.8E+02 0.0038 27.4 6.6 26 116-141 177-202 (563)
284 TIGR00219 mreC rod shape-deter 29.7 2.7E+02 0.0059 24.0 7.3 15 132-146 95-109 (283)
285 PF10393 Matrilin_ccoil: Trime 29.5 1.6E+02 0.0035 19.1 5.0 18 125-142 27-44 (47)
286 KOG4196 bZIP transcription fac 29.5 2.1E+02 0.0046 22.6 5.9 31 113-143 87-117 (135)
287 PF08172 CASP_C: CASP C termin 29.5 1.8E+02 0.0039 24.9 6.1 29 116-144 109-137 (248)
288 PF04201 TPD52: Tumour protein 29.5 1.6E+02 0.0035 23.9 5.5 27 118-144 33-59 (162)
289 PF08496 Peptidase_S49_N: Pept 29.5 1.8E+02 0.0039 23.1 5.8 26 80-105 10-35 (155)
290 PF03234 CDC37_N: Cdc37 N term 29.5 2.5E+02 0.0054 22.9 6.7 29 118-146 43-71 (177)
291 COG0566 SpoU rRNA methylases [ 29.3 41 0.00088 28.7 2.2 17 87-103 242-258 (260)
292 cd01109 HTH_YyaN Helix-Turn-He 29.3 2E+02 0.0043 20.9 5.6 27 117-143 82-108 (113)
293 PRK13182 racA polar chromosome 28.9 2.5E+02 0.0055 22.7 6.6 20 127-146 124-143 (175)
294 PRK03918 chromosome segregatio 28.9 2.8E+02 0.0061 27.0 8.0 34 113-146 618-651 (880)
295 cd01324 cbb3_Oxidase_CcoQ Cyto 28.8 1.5E+02 0.0033 19.0 4.3 33 73-105 6-38 (48)
296 PF09812 MRP-L28: Mitochondria 28.8 1.9E+02 0.0041 23.1 5.8 44 115-159 90-133 (157)
297 PF11101 DUF2884: Protein of u 28.7 3.5E+02 0.0075 22.6 12.5 44 43-86 99-145 (229)
298 PF04111 APG6: Autophagy prote 28.6 2.8E+02 0.0061 24.3 7.3 25 119-143 62-86 (314)
299 PF01166 TSC22: TSC-22/dip/bun 28.6 1.6E+02 0.0034 20.2 4.5 19 116-134 16-34 (59)
300 cd04775 HTH_Cfa-like Helix-Tur 28.4 1.4E+02 0.003 21.5 4.6 27 118-144 75-101 (102)
301 PF12958 DUF3847: Protein of u 28.3 1.6E+02 0.0036 21.3 4.9 31 111-141 5-35 (86)
302 PHA03385 IX capsid protein IX, 28.3 1.4E+02 0.003 23.5 4.7 34 111-144 97-130 (135)
303 PF10158 LOH1CR12: Tumour supp 28.3 2.8E+02 0.0061 21.4 7.3 49 96-144 69-117 (131)
304 COG1579 Zn-ribbon protein, pos 28.3 2.2E+02 0.0048 24.4 6.4 32 113-144 51-82 (239)
305 KOG3088 Secretory carrier memb 28.2 1.2E+02 0.0026 27.1 4.9 25 118-142 68-92 (313)
306 PF14193 DUF4315: Domain of un 28.1 1.9E+02 0.004 20.9 5.1 33 110-142 4-36 (83)
307 PF11471 Sugarporin_N: Maltopo 27.8 1.7E+02 0.0037 19.7 4.6 28 118-145 29-56 (60)
308 KOG0977 Nuclear envelope prote 27.6 1E+02 0.0023 29.5 4.7 49 110-158 45-95 (546)
309 PF06212 GRIM-19: GRIM-19 prot 27.6 2.9E+02 0.0064 21.4 9.4 19 85-103 33-51 (130)
310 PF03670 UPF0184: Uncharacteri 27.6 1.7E+02 0.0038 21.2 4.9 30 111-140 30-59 (83)
311 PF11336 DUF3138: Protein of u 27.5 86 0.0019 29.6 4.0 24 123-146 27-50 (514)
312 TIGR03495 phage_LysB phage lys 27.4 3.1E+02 0.0066 21.5 9.7 10 115-124 41-50 (135)
313 cd04769 HTH_MerR2 Helix-Turn-H 27.4 1.3E+02 0.0029 22.0 4.4 26 113-138 85-110 (116)
314 TIGR00328 flhB flagellar biosy 27.3 4.4E+02 0.0096 23.6 8.4 28 66-93 168-195 (347)
315 PF07271 Cytadhesin_P30: Cytad 27.3 2.2E+02 0.0047 25.2 6.2 23 74-96 73-95 (279)
316 PF10779 XhlA: Haemolysin XhlA 27.1 2.1E+02 0.0045 19.5 7.3 26 117-142 23-48 (71)
317 PF12777 MT: Microtubule-bindi 27.1 4.3E+02 0.0094 23.2 9.5 35 3-37 88-122 (344)
318 cd07596 BAR_SNX The Bin/Amphip 27.1 3E+02 0.0065 21.3 7.9 30 115-144 146-175 (218)
319 PF05833 FbpA: Fibronectin-bin 27.0 21 0.00046 32.1 0.0 37 98-134 385-421 (455)
320 smart00502 BBC B-Box C-termina 27.0 2.3E+02 0.0049 19.9 6.1 37 111-147 69-105 (127)
321 KOG4010 Coiled-coil protein TP 26.8 2.2E+02 0.0047 24.0 5.9 27 118-144 48-74 (208)
322 PRK10722 hypothetical protein; 26.8 2.1E+02 0.0046 24.8 6.0 41 100-140 169-209 (247)
323 TIGR01837 PHA_granule_1 poly(h 26.7 2.8E+02 0.006 20.8 9.2 19 128-146 96-114 (118)
324 PRK08156 type III secretion sy 26.4 4.7E+02 0.01 23.7 8.5 26 67-92 164-189 (361)
325 COG3937 Uncharacterized conser 26.2 92 0.002 23.7 3.3 14 131-144 86-99 (108)
326 PRK10864 putative methyltransf 26.2 50 0.0011 29.7 2.2 19 84-102 326-344 (346)
327 PF08232 Striatin: Striatin fa 26.2 2.7E+02 0.0059 21.4 6.1 35 112-146 30-64 (134)
328 TIGR02231 conserved hypothetic 26.1 2.1E+02 0.0046 26.5 6.4 32 115-146 139-170 (525)
329 PRK09413 IS2 repressor TnpA; R 26.0 2E+02 0.0043 21.3 5.2 17 35-51 37-53 (121)
330 PF05164 ZapA: Cell division p 25.8 2.2E+02 0.0047 19.3 6.4 15 90-104 53-67 (89)
331 COG1340 Uncharacterized archae 25.8 4.7E+02 0.01 23.2 8.2 39 107-145 207-245 (294)
332 cd01106 HTH_TipAL-Mta Helix-Tu 25.7 1.7E+02 0.0038 20.8 4.7 27 117-143 76-102 (103)
333 PF05812 Herpes_BLRF2: Herpesv 25.7 1.6E+02 0.0036 22.7 4.7 31 122-152 4-34 (118)
334 PF03980 Nnf1: Nnf1 ; InterPr 25.6 1.7E+02 0.0037 21.2 4.7 25 117-141 83-107 (109)
335 KOG1318 Helix loop helix trans 25.6 2.3E+02 0.0049 26.4 6.3 45 95-146 278-322 (411)
336 PRK11181 23S rRNA (guanosine-2 25.5 55 0.0012 27.5 2.3 20 83-102 223-242 (244)
337 PF07544 Med9: RNA polymerase 25.4 1.4E+02 0.003 21.1 4.0 27 119-145 50-76 (83)
338 PF06120 Phage_HK97_TLTM: Tail 25.4 4.8E+02 0.01 23.1 9.9 36 113-148 80-115 (301)
339 PF07889 DUF1664: Protein of u 25.4 3.2E+02 0.007 21.1 6.7 8 96-103 56-63 (126)
340 PRK06342 transcription elongat 25.3 2.1E+02 0.0047 22.7 5.5 18 129-146 65-82 (160)
341 KOG3684 Ca2+-activated K+ chan 25.3 3.8E+02 0.0082 25.5 7.8 35 118-154 438-472 (489)
342 KOG2391 Vacuolar sorting prote 25.2 5.3E+02 0.012 23.6 8.5 22 119-140 251-272 (365)
343 PRK05771 V-type ATP synthase s 25.2 1.4E+02 0.003 28.5 5.1 31 115-145 94-124 (646)
344 PF10280 Med11: Mediator compl 25.2 81 0.0018 23.7 2.9 53 5-58 18-70 (117)
345 PF15058 Speriolin_N: Sperioli 25.0 1.2E+02 0.0026 25.4 4.1 24 117-140 8-31 (200)
346 PF15397 DUF4618: Domain of un 24.8 4.6E+02 0.01 22.8 8.5 32 113-144 192-223 (258)
347 PF01102 Glycophorin_A: Glycop 24.7 86 0.0019 24.2 3.0 10 95-104 85-94 (122)
348 COG2165 PulG Type II secretory 24.5 2.7E+02 0.0058 19.9 7.2 27 79-105 14-40 (149)
349 PF04999 FtsL: Cell division p 24.5 2.6E+02 0.0056 19.7 9.0 28 115-142 43-70 (97)
350 KOG3088 Secretory carrier memb 24.3 1.6E+02 0.0036 26.2 5.0 28 107-134 64-91 (313)
351 PF00816 Histone_HNS: H-NS his 24.3 2.3E+02 0.0051 19.9 5.1 14 135-148 24-37 (93)
352 PF05597 Phasin: Poly(hydroxya 24.1 94 0.002 24.2 3.2 20 127-146 108-127 (132)
353 TIGR01837 PHA_granule_1 poly(h 24.0 1.1E+02 0.0025 23.0 3.5 22 121-142 96-117 (118)
354 KOG2391 Vacuolar sorting prote 24.0 2.6E+02 0.0057 25.5 6.3 33 113-145 231-263 (365)
355 COG1579 Zn-ribbon protein, pos 23.9 4.6E+02 0.0099 22.5 7.5 30 115-144 46-75 (239)
356 PF06936 Selenoprotein_S: Sele 23.8 2.5E+02 0.0054 23.2 5.8 24 127-150 109-132 (190)
357 PF02994 Transposase_22: L1 tr 23.8 2.8E+02 0.0061 24.9 6.6 34 113-146 157-190 (370)
358 PRK07353 F0F1 ATP synthase sub 23.7 3.1E+02 0.0068 20.4 10.3 27 78-104 6-32 (140)
359 COG4694 Uncharacterized protei 23.7 7.2E+02 0.016 24.6 10.1 41 118-158 456-508 (758)
360 PF12325 TMF_TATA_bd: TATA ele 23.7 3.4E+02 0.0073 20.7 7.0 19 127-145 95-113 (120)
361 COG5185 HEC1 Protein involved 23.7 2.2E+02 0.0048 27.4 5.9 34 116-149 332-365 (622)
362 PF10458 Val_tRNA-synt_C: Valy 23.6 1.7E+02 0.0038 19.5 4.1 24 122-145 5-28 (66)
363 COG4191 Signal transduction hi 23.6 7E+02 0.015 24.4 11.7 39 66-104 284-322 (603)
364 PF07996 T4SS: Type IV secreti 23.6 1.8E+02 0.0038 23.0 4.8 36 121-156 19-55 (195)
365 PF07334 IFP_35_N: Interferon- 23.6 1.9E+02 0.0041 20.7 4.3 26 118-143 4-29 (76)
366 PF11464 Rbsn: Rabenosyn Rab b 23.5 1.3E+02 0.0028 19.1 3.2 23 111-133 19-41 (42)
367 PRK14011 prefoldin subunit alp 23.4 3.1E+02 0.0067 21.6 6.0 13 72-84 72-84 (144)
368 KOG3491 Predicted membrane pro 23.2 1.1E+02 0.0024 21.1 2.9 24 79-103 39-62 (65)
369 PF07195 FliD_C: Flagellar hoo 23.1 2E+02 0.0043 23.8 5.2 15 72-86 143-157 (239)
370 PRK12772 bifunctional flagella 23.1 5E+02 0.011 25.1 8.4 25 66-90 431-455 (609)
371 PRK12468 flhB flagellar biosyn 23.1 5.7E+02 0.012 23.3 8.4 22 68-89 177-198 (386)
372 PF11180 DUF2968: Protein of u 23.1 4.5E+02 0.0097 22.0 7.2 28 118-145 158-185 (192)
373 PF12718 Tropomyosin_1: Tropom 23.1 3.6E+02 0.0079 20.9 6.6 30 115-144 29-58 (143)
374 smart00543 MIF4G Middle domain 22.8 1.7E+02 0.0036 22.4 4.4 37 70-106 92-128 (200)
375 PF07544 Med9: RNA polymerase 22.8 1.1E+02 0.0023 21.6 3.0 21 126-146 50-70 (83)
376 PF01920 Prefoldin_2: Prefoldi 22.8 2.7E+02 0.0059 19.3 6.3 34 113-146 4-37 (106)
377 PRK01203 prefoldin subunit alp 22.7 3.4E+02 0.0073 21.2 6.0 33 114-146 7-39 (130)
378 PF14817 HAUS5: HAUS augmin-li 22.6 2.4E+02 0.0052 27.6 6.2 8 32-39 25-32 (632)
379 PF04420 CHD5: CHD5-like prote 22.6 3.9E+02 0.0084 21.0 6.5 24 118-141 70-93 (161)
380 PF06785 UPF0242: Uncharacteri 22.6 4.5E+02 0.0098 24.1 7.5 57 84-140 43-111 (401)
381 PF04156 IncA: IncA protein; 22.4 3.8E+02 0.0083 20.9 9.8 26 113-138 87-112 (191)
382 PF08657 DASH_Spc34: DASH comp 22.1 2.4E+02 0.0053 24.3 5.6 72 71-146 140-219 (259)
383 PF04012 PspA_IM30: PspA/IM30 22.1 4.2E+02 0.0092 21.3 7.4 26 112-137 117-142 (221)
384 PF07106 TBPIP: Tat binding pr 22.0 2.5E+02 0.0054 21.9 5.3 27 116-142 111-137 (169)
385 PF06624 RAMP4: Ribosome assoc 21.9 34 0.00073 23.5 0.2 20 83-103 43-62 (63)
386 PF12097 DUF3573: Protein of u 21.8 1.9E+02 0.0041 26.5 5.0 26 111-136 39-64 (383)
387 PRK15396 murein lipoprotein; P 21.8 3E+02 0.0066 19.6 7.8 32 109-140 27-58 (78)
388 COG3064 TolA Membrane protein 21.8 2E+02 0.0044 26.2 5.1 16 89-104 55-70 (387)
389 PHA00728 hypothetical protein 21.8 1.3E+02 0.0029 23.6 3.6 25 122-146 6-30 (151)
390 PF02050 FliJ: Flagellar FliJ 21.7 2.8E+02 0.006 19.1 5.6 34 115-148 6-39 (123)
391 COG3074 Uncharacterized protei 21.6 2.4E+02 0.0052 20.1 4.5 33 111-143 22-54 (79)
392 PF04012 PspA_IM30: PspA/IM30 21.6 4.3E+02 0.0094 21.3 7.2 28 114-141 105-132 (221)
393 PF09177 Syntaxin-6_N: Syntaxi 21.5 3.1E+02 0.0067 19.5 6.1 25 121-145 39-63 (97)
394 COG3132 Uncharacterized protei 21.5 1.4E+02 0.0029 25.1 3.7 23 119-141 190-212 (215)
395 PF15188 CCDC-167: Coiled-coil 21.4 2E+02 0.0044 20.9 4.3 23 124-146 39-61 (85)
396 COG3599 DivIVA Cell division i 21.3 3.5E+02 0.0076 22.7 6.2 39 110-148 26-64 (212)
397 PF09766 FimP: Fms-interacting 21.3 3.8E+02 0.0083 23.9 6.9 31 115-145 109-139 (355)
398 PF14362 DUF4407: Domain of un 21.2 5.1E+02 0.011 22.0 9.7 31 115-145 136-166 (301)
399 KOG3756 Pinin (desmosome-assoc 21.2 6.2E+02 0.013 22.9 9.1 32 109-140 177-208 (340)
400 KOG2577 Transcription factor E 21.0 2.3E+02 0.0049 25.8 5.3 33 113-145 143-175 (354)
401 PF04201 TPD52: Tumour protein 21.0 4.2E+02 0.009 21.6 6.4 35 110-144 32-66 (162)
402 PF07558 Shugoshin_N: Shugoshi 20.9 1.4E+02 0.003 19.0 2.9 27 111-137 18-44 (46)
403 KOG3650 Predicted coiled-coil 20.9 2E+02 0.0044 21.8 4.3 25 117-141 59-83 (120)
404 PLN02678 seryl-tRNA synthetase 20.8 3.4E+02 0.0073 25.3 6.6 41 117-158 74-114 (448)
405 PRK08808 general secretion pat 20.8 5E+02 0.011 21.6 8.2 26 79-104 13-38 (211)
406 PF09744 Jnk-SapK_ap_N: JNK_SA 20.7 4.4E+02 0.0096 21.0 8.2 27 119-145 87-113 (158)
407 TIGR01242 26Sp45 26S proteasom 20.6 2.8E+02 0.0062 24.2 5.9 33 110-142 9-41 (364)
408 PF02185 HR1: Hr1 repeat; Int 20.6 2.7E+02 0.0059 18.6 5.9 17 69-85 11-27 (70)
409 PRK05771 V-type ATP synthase s 20.4 2.6E+02 0.0056 26.7 5.9 34 110-143 96-129 (646)
410 PF14147 Spore_YhaL: Sporulati 20.3 2.8E+02 0.006 18.5 4.6 24 86-109 5-30 (52)
411 TIGR00186 rRNA_methyl_3 rRNA m 20.3 74 0.0016 26.5 2.0 19 83-101 218-236 (237)
412 PRK01203 prefoldin subunit alp 20.2 2.5E+02 0.0055 21.9 4.8 31 112-142 12-42 (130)
413 PF15086 UPF0542: Uncharacteri 20.1 3.3E+02 0.0073 19.4 5.7 20 87-106 33-52 (74)
414 PF15361 RIC3: Resistance to i 20.1 2.3E+02 0.005 22.4 4.7 27 107-133 124-150 (152)
415 TIGR01834 PHA_synth_III_E poly 20.0 1.8E+02 0.0038 26.1 4.4 30 113-142 288-317 (320)
No 1
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=100.00 E-value=1.5e-51 Score=319.55 Aligned_cols=133 Identities=44% Similarity=0.720 Sum_probs=129.7
Q ss_pred cHHHHHHHHHHHhhhHHHHHHHHHHhhChhhhHhhhchhHHHHHHHHHHhhHHhcC-CCCCCcCCCCHHHHHHHHHHHHH
Q 030907 4 PVVKLGTLALKTLSKPVAAKLKQQAAIHPRFRQSIVGIAQANHRITTRMQRRIYGH-ATGGEIRPLNEEKAVQAAVDLIG 82 (169)
Q Consensus 4 Pl~KL~~L~iR~iSKPian~iK~~A~~~p~fR~~~i~~gq~~h~~e~rl~~~~lg~-~~~~~i~pL~Ee~Ave~GAe~lg 82 (169)
|++||++|+|||+|||+||+||++|++||+||++||++||.|||+|+|++|+++|. +.+.+|+||||++|||+||||||
T Consensus 1 Pl~Kl~~L~ir~iSKPia~~ik~~A~~~p~fR~~~i~~aq~~h~~e~~l~~~~~~~~~~~~~i~pL~e~~Aie~Gaell~ 80 (134)
T PF07047_consen 1 PLAKLGSLFIRQISKPIANRIKRQAKKHPFFRKYCIPLAQSYHRFEVRLKMRILGLKGKPRKIRPLNEEKAIELGAELLG 80 (134)
T ss_pred ChHHHHHHHHHHhhHHHHHHHHHHHHhCchHHHhhhHHHHHHHHHHHHHHHHHhccccCCCcCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999 67889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 83 EIFIFTVAGAAVIFEVQRSARSEARKEEIRKQELEALRQRDEGLARELELLRQK 136 (169)
Q Consensus 83 E~fIF~Va~~li~~E~~Rs~~ke~~Kee~~~~~le~L~~~~~~l~~eve~l~~~ 136 (169)
|+|||+||+|+++|||||+++++++||+.+++++++|+.++++|+.+++++++|
T Consensus 81 E~fiF~Va~~li~~E~~Rs~~ke~~Ke~~~~~~l~~L~~~i~~L~~~~~~~~~~ 134 (134)
T PF07047_consen 81 EAFIFSVAAGLIIYEYWRSARKEAKKEEELQERLEELEERIEELEEQVEKQQER 134 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999998864
No 2
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=100.00 E-value=4e-47 Score=305.15 Aligned_cols=137 Identities=43% Similarity=0.643 Sum_probs=131.9
Q ss_pred HHHHHHhhhHHHHHHHHHHhhChhhhHh-hhchhHHHHHHHHHHhhHHhcCCCCCCcCCCCHHHHHHHHHHHHHHHHHHH
Q 030907 10 TLALKTLSKPVAAKLKQQAAIHPRFRQS-IVGIAQANHRITTRMQRRIYGHATGGEIRPLNEEKAVQAAVDLIGEIFIFT 88 (169)
Q Consensus 10 ~L~iR~iSKPian~iK~~A~~~p~fR~~-~i~~gq~~h~~e~rl~~~~lg~~~~~~i~pL~Ee~Ave~GAe~lgE~fIF~ 88 (169)
+|+||||||||||+||++|+.||+||++ |+++||.|||+++|++||++|.++++.|+||||++|||+|||||||+|||+
T Consensus 1 ~LairqvSKPIAn~IK~~AK~~p~FR~~~~ip~Aq~~hr~~~r~kmr~lg~g~~v~i~PLnEa~Ave~gadlLgE~~iF~ 80 (181)
T KOG3335|consen 1 TLAIRQVSKPIANQIKRQAKVHPFFRTKICIPPAQLYHRFTVRLKMRALGLGGPVVIRPLNEAAAVEAGADLLGELFIFS 80 (181)
T ss_pred CccHHHhhHHHHHHHHHHhccChHhHhhhccCHHHhhHHHHHHHHHHHhcCCCCcccCCCCHHHHHHHHHHHHhhHHhee
Confidence 4899999999999999999999999965 679999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 89 VAGAAVIFEVQRSARSEARKEEIRKQELEALRQRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 89 Va~~li~~E~~Rs~~ke~~Kee~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
||+|+++|||||+++++.+||+.+++++++|+.+++.|+.++++++.++++|...+..
T Consensus 81 vggg~lv~Ey~R~~~~e~~kee~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~~~l~~ 138 (181)
T KOG3335|consen 81 VGGGVLVFEYWRQARKERKKEEKRKQEIMELRLKVEKLENAIAELTKFFSQLHSKLNK 138 (181)
T ss_pred ecceeeeehhHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999999999766654
No 3
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=95.64 E-value=0.23 Score=34.76 Aligned_cols=49 Identities=22% Similarity=0.311 Sum_probs=31.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCC
Q 030907 102 ARSEARKEEIRKQELEALRQRDEGLARELELLRQKIEELEQLAKQR-GLSG 151 (169)
Q Consensus 102 ~~ke~~Kee~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~~-~~~~ 151 (169)
.+.....-+..++++++++.+.++|..++..+.. -+.+++..+.. |+..
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~-~~rIe~~Ar~~lgM~~ 75 (85)
T TIGR02209 26 TRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR-HERIEKIAKKQLGMKL 75 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHhcCCCC
Confidence 3333344445566677777777888877777765 56678888764 6543
No 4
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=95.12 E-value=0.34 Score=36.19 Aligned_cols=51 Identities=20% Similarity=0.259 Sum_probs=38.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCC
Q 030907 101 SARSEARKEEIRKQELEALRQRDEGLARELELLRQKIEELEQLAKQ-RGLSG 151 (169)
Q Consensus 101 s~~ke~~Kee~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~-~~~~~ 151 (169)
+..+-..+-+..++++++++.+.+.|..+++.++..-+-+|+..+. .|+..
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~~Lg~vk 79 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARNELGMVK 79 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHcCCCC
Confidence 3444444555667788889999999999999998877888888875 56533
No 5
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=93.74 E-value=0.3 Score=33.33 Aligned_cols=41 Identities=27% Similarity=0.499 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCC
Q 030907 110 EIRKQELEALRQRDEGLARELELLRQKIEELEQLAK-QRGLS 150 (169)
Q Consensus 110 e~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~-~~~~~ 150 (169)
...+.++++++.+.++|..+++.++..-+.+|+..+ ..|+.
T Consensus 27 ~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~~lgm~ 68 (80)
T PF04977_consen 27 AELQKEIEELKKENEELKEEIERLKNDPDYIEKVAREKLGMV 68 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCc
Confidence 345666777778888888888888667777788887 45553
No 6
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=93.24 E-value=0.33 Score=34.57 Aligned_cols=32 Identities=16% Similarity=0.232 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 030907 120 RQRDEGLARELELLRQKIEELEQLAKQRGLSGI 152 (169)
Q Consensus 120 ~~~~~~l~~eve~l~~~i~ele~~~~~~~~~~~ 152 (169)
++++++|....+.+++||+.||+.+-+.+ |+|
T Consensus 41 ~~~L~~L~~~a~rm~eRI~tLE~ILd~e~-P~w 72 (75)
T TIGR02976 41 QALLQELYAKADRLEERIDTLERILDAEH-PNW 72 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCC-cCc
Confidence 35567888889999999999999998765 444
No 7
>PF10960 DUF2762: Protein of unknown function (DUF2762); InterPro: IPR024405 BhlA is a SP-beta prophage-derived protein found in Bacillus subtilis [, ] and other Bacilli. A related protein, UviB, has also been described in Clostridia, where it is believed to be involved in bacteriocin secretion or immunity [, ].
Probab=92.57 E-value=1.5 Score=30.81 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHhhhhHH
Q 030907 86 IFTVAGAAVIFEVQRSARSEA 106 (169)
Q Consensus 86 IF~Va~~li~~E~~Rs~~ke~ 106 (169)
+|++...++++-..|.+++-.
T Consensus 14 ~fA~LFv~Ll~yvlK~~~~re 34 (71)
T PF10960_consen 14 IFAVLFVWLLFYVLKENKKRE 34 (71)
T ss_pred cHHHHHHHHHHHHHHHhHHhH
Confidence 577777777776666665433
No 8
>PHA01750 hypothetical protein
Probab=91.58 E-value=3 Score=29.38 Aligned_cols=49 Identities=27% Similarity=0.367 Sum_probs=37.6
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 95 IFEVQRSARSEARKEEIRKQELEALRQRDEGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 95 ~~E~~Rs~~ke~~Kee~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~ 144 (169)
+|--.+++-+++.| +..++++++|..+++++......+++++.|+.+.+
T Consensus 24 lYlKIKq~lkdAvk-eIV~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~ 72 (75)
T PHA01750 24 LYLKIKQALKDAVK-EIVNSELDNLKTEIEELKIKQDELSRQVEEIKRKL 72 (75)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 34445677777766 57788999999998888888888888888887654
No 9
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=88.75 E-value=6.6 Score=27.76 Aligned_cols=55 Identities=15% Similarity=0.253 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 86 IFTVAGAAVIFEVQRSARSEARKEEIRKQELEALRQRDEGLARELELLRQKIEEL 140 (169)
Q Consensus 86 IF~Va~~li~~E~~Rs~~ke~~Kee~~~~~le~L~~~~~~l~~eve~l~~~i~el 140 (169)
|++++..++++-....-.+-.+.=++....++.++++++.+..++..+-.+.+++
T Consensus 5 I~Aiaf~vLvi~l~~~l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l 59 (90)
T PF06103_consen 5 IAAIAFAVLVIFLIKVLKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNEL 59 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4444444444433333333322223334444445555544444444444444433
No 10
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=87.57 E-value=4.9 Score=31.05 Aligned_cols=52 Identities=25% Similarity=0.402 Sum_probs=40.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 94 VIFEVQRSARSEARKEEIRKQELEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 94 i~~E~~Rs~~ke~~Kee~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
++|+...+...+....+....++..++.+++.+...++.++.++.++++.+.
T Consensus 39 ~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~ 90 (151)
T PF11559_consen 39 CIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELA 90 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777888887777777777778888888888888888888877777654
No 11
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=87.28 E-value=1.9 Score=30.70 Aligned_cols=32 Identities=25% Similarity=0.344 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 030907 120 RQRDEGLARELELLRQKIEELEQLAKQRGLSGI 152 (169)
Q Consensus 120 ~~~~~~l~~eve~l~~~i~ele~~~~~~~~~~~ 152 (169)
++++++|....+.++.||+.||+.+-+-+ |+|
T Consensus 41 ~~~L~~L~~~a~rm~eRI~tLE~ILdae~-P~w 72 (75)
T PF06667_consen 41 EQRLQELYEQAERMEERIETLERILDAEH-PNW 72 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCc
Confidence 45678888899999999999999997764 444
No 12
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=86.93 E-value=5 Score=29.90 Aligned_cols=32 Identities=19% Similarity=0.213 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 110 EIRKQELEALRQRDEGLARELELLRQKIEELE 141 (169)
Q Consensus 110 e~~~~~le~L~~~~~~l~~eve~l~~~i~ele 141 (169)
.+.++++++++.++++++.+.+.|+.+|+.|.
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455666666777777777777777766664
No 13
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=86.86 E-value=11 Score=29.14 Aligned_cols=65 Identities=22% Similarity=0.239 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 75 QAAVDLIGEIFIFTVAGAAVIFEVQRSARSEARKEEIRKQELEALRQRDEGLARELELLRQKIEELEQ 142 (169)
Q Consensus 75 e~GAe~lgE~fIF~Va~~li~~E~~Rs~~ke~~Kee~~~~~le~L~~~~~~l~~eve~l~~~i~ele~ 142 (169)
+...|+=+|++.=++..++...=++--..+.++|+....+ ++++++++|+.++++++.+++++++
T Consensus 69 ~~Aie~Gaell~E~fiF~Va~~li~~E~~Rs~~ke~~Ke~---~~~~~l~~L~~~i~~L~~~~~~~~~ 133 (134)
T PF07047_consen 69 EKAIELGAELLGEAFIFSVAAGLIIYEYWRSARKEAKKEE---ELQERLEELEERIEELEEQVEKQQE 133 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5788999999986666666666666677777777765543 5567888888888888888887653
No 14
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=86.25 E-value=6.3 Score=28.83 Aligned_cols=28 Identities=25% Similarity=0.496 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 113 KQELEALRQRDEGLARELELLRQKIEEL 140 (169)
Q Consensus 113 ~~~le~L~~~~~~l~~eve~l~~~i~el 140 (169)
..+++.++.+++.++.++..++.+|+++
T Consensus 76 e~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 76 ELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 15
>PF15361 RIC3: Resistance to inhibitors of cholinesterase homologue 3
Probab=85.76 E-value=0.55 Score=37.41 Aligned_cols=70 Identities=13% Similarity=0.271 Sum_probs=36.3
Q ss_pred HHHHHHHHH-HHHHHHHHH-HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 77 AVDLIGEIF-IFTVAGAAV-IFEVQRSARSEARKEEIRKQELEALRQRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 77 GAe~lgE~f-IF~Va~~li-~~E~~Rs~~ke~~Kee~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
+-.+.+-++ ||+||+++. +|=.+|..+++...++........-...-..-..|+..|++||+|-|+++..
T Consensus 78 ~~g~~~~imPlYtiGI~~f~lY~l~Ki~~~k~~~~~~~~~~~~~~~~~~~~~~~eL~qLq~rL~qTE~~m~k 149 (152)
T PF15361_consen 78 GKGLMGQIMPLYTIGIVLFILYTLFKIKKKKDSPRERKSSTERKGNTKRKITDYELAQLQERLAQTERAMEK 149 (152)
T ss_pred CCchhhhHhHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 345677555 688876654 4556665444332222111110011112224456777888888888877753
No 16
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=85.64 E-value=7.6 Score=28.86 Aligned_cols=15 Identities=27% Similarity=0.517 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHh
Q 030907 87 FTVAGAAVIFEVQRS 101 (169)
Q Consensus 87 F~Va~~li~~E~~Rs 101 (169)
++++++++++=+.|+
T Consensus 16 ~~~~~~~~~~~l~~~ 30 (106)
T PF10805_consen 16 FGIAGGIFWLWLRRT 30 (106)
T ss_pred HHHHHHHHHHHHHHh
Confidence 444455554444443
No 17
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=85.28 E-value=8.1 Score=29.62 Aligned_cols=14 Identities=29% Similarity=0.162 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHH
Q 030907 132 LLRQKIEELEQLAK 145 (169)
Q Consensus 132 ~l~~~i~ele~~~~ 145 (169)
.|...-+.+.+++.
T Consensus 61 ~l~~~Y~~l~~Hla 74 (128)
T PF06295_consen 61 NLTQDYQKLYQHLA 74 (128)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444455555553
No 18
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=84.43 E-value=1.6 Score=40.90 Aligned_cols=44 Identities=23% Similarity=0.305 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccc
Q 030907 113 KQELEALRQRDEGLARELELLRQKIEELEQLAKQRGLSGIFSFK 156 (169)
Q Consensus 113 ~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~~~~~~~~~~~ 156 (169)
++++|+|++++++|+.++++++.+++..|+.....-+..-..||
T Consensus 30 ~qkie~L~kql~~Lk~q~~~l~~~v~k~e~~s~~d~lk~~~DfR 73 (489)
T PF11853_consen 30 LQKIEALKKQLEELKAQQDDLNDRVDKVEKHSAGDNLKFGGDFR 73 (489)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccchhhHhhhcCcEEEeeEEE
Confidence 33889999999999999999999999999977654444333333
No 19
>PRK04654 sec-independent translocase; Provisional
Probab=83.42 E-value=18 Score=30.65 Aligned_cols=59 Identities=22% Similarity=0.299 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHH------------HHHHhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 81 IGEIFIFTVAGAAVIF------------EVQRSARS---EARKEEIRKQELEALRQRDEGLARELELLRQKIEE 139 (169)
Q Consensus 81 lgE~fIF~Va~~li~~------------E~~Rs~~k---e~~Kee~~~~~le~L~~~~~~l~~eve~l~~~i~e 139 (169)
++|++|.+|.+.+++. .+.|..|+ +.+.+-.+..++++|++.+++....+.....+++.
T Consensus 6 ~~ELLlI~VVALlV~GPerLPe~aRtlGk~irk~R~~~~~vk~El~~El~~~ELrk~l~~~~~~i~~~~~~lk~ 79 (214)
T PRK04654 6 VGELTLIAVVALVVLGPERLPKAARFAGLWVRRARMQWDSVKQELERELEAEELKRSLQDVQASLREAEDQLRN 79 (214)
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888777777643 23333322 22333333445555666555555555554444443
No 20
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=83.39 E-value=4.4 Score=35.72 Aligned_cols=46 Identities=28% Similarity=0.341 Sum_probs=34.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030907 102 ARSEARKEEIRKQELEALRQRDEGLARELELLRQKIEELEQLAKQR 147 (169)
Q Consensus 102 ~~ke~~Kee~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~~ 147 (169)
++|.+.+.|....+++.|+++-++|.++++.+..+|+.|.+++.++
T Consensus 243 RqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~ 288 (294)
T KOG4571|consen 243 RQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEV 288 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444456677888888888888888888888898888888654
No 21
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=82.70 E-value=8.7 Score=28.74 Aligned_cols=31 Identities=39% Similarity=0.535 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 114 QELEALRQRDEGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 114 ~~le~L~~~~~~l~~eve~l~~~i~ele~~~ 144 (169)
.+.|+|+.-.+.|..+++.++..|++++..+
T Consensus 69 ~EkEqL~~Lk~kl~~e~~~~~k~i~~le~~I 99 (100)
T PF04568_consen 69 KEKEQLKKLKEKLKEEIEHHRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3334444445556666677777777777654
No 22
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=82.10 E-value=11 Score=24.37 Aligned_cols=31 Identities=45% Similarity=0.535 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 112 RKQELEALRQRDEGLARELELLRQKIEELEQ 142 (169)
Q Consensus 112 ~~~~le~L~~~~~~l~~eve~l~~~i~ele~ 142 (169)
..+....++.++..|..+...|..++..|+.
T Consensus 23 kk~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 23 KKQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3555667888888888888888888888864
No 23
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=81.20 E-value=13 Score=24.66 Aligned_cols=34 Identities=32% Similarity=0.474 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 112 RKQELEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 112 ~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
..+.+++|+.+++.|..+...|..++..|+..+.
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~ 57 (64)
T PF00170_consen 24 KKQYIEELEEKVEELESENEELKKELEQLKKEIQ 57 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677788888888888888877777776654
No 24
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=80.74 E-value=13 Score=28.76 Aligned_cols=38 Identities=24% Similarity=0.341 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030907 110 EIRKQELEALRQRDEGLARELELLRQKIEELEQLAKQR 147 (169)
Q Consensus 110 e~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~~ 147 (169)
+...++.+.|+.+++.|++..+.++.++++|...+..+
T Consensus 73 ~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 73 DELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788899999999999999999999999988653
No 25
>smart00338 BRLZ basic region leucin zipper.
Probab=80.72 E-value=14 Score=24.59 Aligned_cols=33 Identities=36% Similarity=0.478 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 113 KQELEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 113 ~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
.+.+.+|+.++..|..+.+.|..++..|+....
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~ 57 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEIERLRRELE 57 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777777777777777665543
No 26
>PF14142 YrzO: YrzO-like protein
Probab=80.69 E-value=7.7 Score=24.84 Aligned_cols=29 Identities=17% Similarity=0.384 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 030907 84 IFIFTVAGAAVIFEVQRSARSEARKEEIR 112 (169)
Q Consensus 84 ~fIF~Va~~li~~E~~Rs~~ke~~Kee~~ 112 (169)
+|.|+++.++=+.-+.|.-+|.-+...+.
T Consensus 6 lff~a~gvacelaainrngrk~ikqqael 34 (46)
T PF14142_consen 6 LFFFAAGVACELAAINRNGRKKIKQQAEL 34 (46)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 34556666666777888777654444333
No 27
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=80.63 E-value=4.9 Score=27.17 Aligned_cols=28 Identities=39% Similarity=0.544 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 113 KQELEALRQRDEGLARELELLRQKIEEL 140 (169)
Q Consensus 113 ~~~le~L~~~~~~l~~eve~l~~~i~el 140 (169)
++++.+++.+++++..+.+.++.+++.+
T Consensus 23 ~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 23 NQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556677777777777777777777666
No 28
>PRK09458 pspB phage shock protein B; Provisional
Probab=79.43 E-value=4.3 Score=29.03 Aligned_cols=31 Identities=26% Similarity=0.364 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 030907 121 QRDEGLARELELLRQKIEELEQLAKQRGLSGI 152 (169)
Q Consensus 121 ~~~~~l~~eve~l~~~i~ele~~~~~~~~~~~ 152 (169)
+++++|....+.+++||+.||+.+-+-. |+|
T Consensus 42 ~~L~~L~~~A~rm~~RI~tLE~ILDae~-P~W 72 (75)
T PRK09458 42 QRLAQLTEKAERMRERIQALEAILDAEH-PNW 72 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccC-CCc
Confidence 4567788888899999999999997764 444
No 29
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=79.02 E-value=11 Score=27.82 Aligned_cols=36 Identities=31% Similarity=0.409 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 111 IRKQELEALRQRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 111 ~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
....+++.++..+..++...+.++.++.++++.++.
T Consensus 71 ~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 71 ELKEKKETLELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777777777777777777776654
No 30
>PRK09343 prefoldin subunit beta; Provisional
Probab=78.65 E-value=15 Score=27.83 Aligned_cols=58 Identities=21% Similarity=0.353 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 83 EIFIFTVAGAAVIFEVQRSARSEARKEEIRKQELEALRQRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 83 E~fIF~Va~~li~~E~~Rs~~ke~~Kee~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
+.-||-..|-+++ ++ .++..+ .....+++.++.++..++...+.++.++.+++..++.
T Consensus 53 d~~VYk~VG~vlv----~q-d~~e~~-~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ 110 (121)
T PRK09343 53 DTPIYKIVGNLLV----KV-DKTKVE-KELKERKELLELRSRTLEKQEKKLREKLKELQAKINE 110 (121)
T ss_pred cchhHHHhhHHHh----hc-cHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3557744444443 22 233333 2345566777777888888888888888877777764
No 31
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=78.01 E-value=20 Score=24.73 Aligned_cols=29 Identities=28% Similarity=0.396 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 113 KQELEALRQRDEGLARELELLRQKIEELE 141 (169)
Q Consensus 113 ~~~le~L~~~~~~l~~eve~l~~~i~ele 141 (169)
..++++++.++++++.+.+.|+.++..+.
T Consensus 30 ~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 30 NNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44555566666666666666665555443
No 32
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=77.91 E-value=22 Score=25.30 Aligned_cols=34 Identities=26% Similarity=0.531 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCC
Q 030907 115 ELEALRQRDEGLARELELLRQKIEELEQLAK-QRGL 149 (169)
Q Consensus 115 ~le~L~~~~~~l~~eve~l~~~i~ele~~~~-~~~~ 149 (169)
+.++++.+-+.|..|...+.. .+.+|+..+ ..|.
T Consensus 50 ~~~~l~~e~~~L~lE~~~l~~-~~rIe~iA~~~LgM 84 (97)
T PF04999_consen 50 EIDQLQEENERLRLEIATLSS-PSRIERIAREKLGM 84 (97)
T ss_pred HHHHHHHHHHHHHHHHHHhhC-HHHHHHHHHHcCCC
Confidence 333444444444444444332 344555555 3454
No 33
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=77.57 E-value=11 Score=32.52 Aligned_cols=36 Identities=31% Similarity=0.414 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 111 IRKQELEALRQRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 111 ~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
.++++.+++..++.+|+.|.+.++.++++|++.+..
T Consensus 212 ~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~ 247 (269)
T KOG3119|consen 212 KRKQKEDEMAHRVAELEKENEALRTQVEQLKKELAT 247 (269)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444566677777777777777777777766643
No 34
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=77.32 E-value=28 Score=26.16 Aligned_cols=52 Identities=25% Similarity=0.307 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 88 TVAGAAVIFEVQRSARSEARKEEIRKQELEALRQRDEGLARELELLRQKIEE 139 (169)
Q Consensus 88 ~Va~~li~~E~~Rs~~ke~~Kee~~~~~le~L~~~~~~l~~eve~l~~~i~e 139 (169)
.+.+.+|+.-.+|+.++++.+-+.-.+.-..-+.+++.+.+.++.+..++.+
T Consensus 47 a~~ap~IlmsQNRq~~~dr~ra~~D~~inl~ae~ei~~l~~~l~~l~~~~~~ 98 (108)
T PF06210_consen 47 AYQAPLILMSQNRQAARDRLRAELDYQINLKAEQEIERLHRKLDALREKLGE 98 (108)
T ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHH
Confidence 4456677888888888876554432222222333444555555555544443
No 35
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=77.16 E-value=24 Score=25.94 Aligned_cols=26 Identities=8% Similarity=-0.003 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 030907 79 DLIGEIFIFTVAGAAVIFEVQRSARS 104 (169)
Q Consensus 79 e~lgE~fIF~Va~~li~~E~~Rs~~k 104 (169)
.|+..++.|+|..+++.+-.|+-..+
T Consensus 1 tl~~~~i~Flil~~~l~~~~~~pi~~ 26 (132)
T PF00430_consen 1 TLFWQLINFLILFFLLNKFLYKPIKK 26 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778888999998888887776655
No 36
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=77.07 E-value=34 Score=26.93 Aligned_cols=63 Identities=25% Similarity=0.240 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHH-HHHHHHHHHHHH
Q 030907 82 GEIFIFTVAGAAVIFEVQRSARSEARKEEIRKQELEALRQR----------DEGLARELELL-RQKIEELEQLAK 145 (169)
Q Consensus 82 gE~fIF~Va~~li~~E~~Rs~~ke~~Kee~~~~~le~L~~~----------~~~l~~eve~l-~~~i~ele~~~~ 145 (169)
+|++. |-++|+++.|..+...+..+|--.-+.-++.|... ++.+..++..- +.+++.|.+.++
T Consensus 3 ~eL~~-gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~ 76 (147)
T PF05659_consen 3 AELVG-GAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLE 76 (147)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHH
Confidence 44443 55667777777777776666654333333333333 33333333333 445555555553
No 37
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=76.45 E-value=29 Score=29.61 Aligned_cols=35 Identities=11% Similarity=0.148 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 111 IRKQELEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 111 ~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
+.+++++.|+.++.+|.=++|.+..+++.+.+..+
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~ 92 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQK 92 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666666554433
No 38
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=75.24 E-value=25 Score=27.87 Aligned_cols=30 Identities=40% Similarity=0.557 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 115 ELEALRQRDEGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 115 ~le~L~~~~~~l~~eve~l~~~i~ele~~~ 144 (169)
++.+.++++.++..++++++.++.+++..+
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l 111 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESEL 111 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443
No 39
>PRK11677 hypothetical protein; Provisional
Probab=75.14 E-value=31 Score=27.07 Aligned_cols=16 Identities=19% Similarity=0.252 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 030907 130 LELLRQKIEELEQLAK 145 (169)
Q Consensus 130 ve~l~~~i~ele~~~~ 145 (169)
++.+...-++|-+++.
T Consensus 63 l~~L~~~Y~~Ly~HlA 78 (134)
T PRK11677 63 LDTMAKDYRQLYQHMA 78 (134)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555566666663
No 40
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=74.72 E-value=47 Score=27.43 Aligned_cols=33 Identities=12% Similarity=0.058 Sum_probs=24.1
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 65 IRPLNEEKAVQAAVDLIGEIFIFTVAGAAVIFEVQR 100 (169)
Q Consensus 65 i~pL~Ee~Ave~GAe~lgE~fIF~Va~~li~~E~~R 100 (169)
+|||+..- ..++++.-++.|+|...++-.-.|+
T Consensus 44 ~p~~~~~~---~~~~l~w~~I~FliL~~lL~k~~~~ 76 (204)
T PRK09174 44 FPPFDSTH---YASQLLWLAITFGLFYLFMSRVILP 76 (204)
T ss_pred CCCCcchh---ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79998874 6678888888888877777444443
No 41
>smart00338 BRLZ basic region leucin zipper.
Probab=74.53 E-value=22 Score=23.59 Aligned_cols=35 Identities=31% Similarity=0.493 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 110 EIRKQELEALRQRDEGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 110 e~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~ 144 (169)
.....+.+.|+...++|..++..++.++..|.+.+
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 29 EELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566777888999999999999999998887765
No 42
>PF10960 DUF2762: Protein of unknown function (DUF2762); InterPro: IPR024405 BhlA is a SP-beta prophage-derived protein found in Bacillus subtilis [, ] and other Bacilli. A related protein, UviB, has also been described in Clostridia, where it is believed to be involved in bacteriocin secretion or immunity [, ].
Probab=74.19 E-value=27 Score=24.47 Aligned_cols=48 Identities=13% Similarity=0.270 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 88 TVAGAAVIFEVQRSARSEARKEEIRKQELEALRQRDEGLARELELLRQ 135 (169)
Q Consensus 88 ~Va~~li~~E~~Rs~~ke~~Kee~~~~~le~L~~~~~~l~~eve~l~~ 135 (169)
|+-+.|.+|=..--.+...++++.+.++-+.++..++.+...++.+..
T Consensus 13 G~fA~LFv~Ll~yvlK~~~~re~~~~~RE~kyq~~I~~lte~~~~~~~ 60 (71)
T PF10960_consen 13 GIFAVLFVWLLFYVLKENKKREEKQEEREEKYQEQIEKLTEKLNVIEE 60 (71)
T ss_pred CcHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555444444444444444444455555555444444443
No 43
>COG4839 FtsL Protein required for the initiation of cell division [Cell division and chromosome partitioning]
Probab=73.94 E-value=32 Score=26.65 Aligned_cols=32 Identities=19% Similarity=0.258 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 111 IRKQELEALRQRDEGLARELELLRQKIEELEQ 142 (169)
Q Consensus 111 ~~~~~le~L~~~~~~l~~eve~l~~~i~ele~ 142 (169)
..+.++.+|+.++.+...+..+++.++.+|-+
T Consensus 64 qvq~ei~~Le~kIs~q~~e~~dlkqeV~dLss 95 (120)
T COG4839 64 QVQGEITDLESKISEQKTENDDLKQEVKDLSS 95 (120)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhHHHHHHHhcc
Confidence 34667788999999999999999999988843
No 44
>PRK00295 hypothetical protein; Provisional
Probab=73.70 E-value=17 Score=25.10 Aligned_cols=36 Identities=17% Similarity=0.151 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 030907 113 KQELEALRQRDEGLARELELLRQKIEELEQLAKQRG 148 (169)
Q Consensus 113 ~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~~~ 148 (169)
.+.+++|.+.+-+.+.++..++.+++.|.+.++..+
T Consensus 18 E~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 18 DDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444455555555555555555555555555555543
No 45
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=73.45 E-value=17 Score=31.76 Aligned_cols=56 Identities=16% Similarity=0.270 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 87 FTVAGAAVIFEVQRSARSEARKEEIRKQELEALRQRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 87 F~Va~~li~~E~~Rs~~ke~~Kee~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
|++++|+++.-+.-+..= -+...++.++|+++.++++.+++.++.+++..++...+
T Consensus 16 lALavGI~lG~~~l~~~l----~~~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~ 71 (308)
T PF11382_consen 16 LALAVGIVLGSGPLQPNL----IDSLEDQFDSLREENDELRAELDALQAQLNAADQFIAA 71 (308)
T ss_pred HHHHHHHHhcchhhchhh----hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777666622211 12223344556666666666666666666555555443
No 46
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=73.03 E-value=21 Score=23.60 Aligned_cols=9 Identities=0% Similarity=-0.112 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 030907 86 IFTVAGAAV 94 (169)
Q Consensus 86 IF~Va~~li 94 (169)
+.|+..|++
T Consensus 29 ~~G~llg~l 37 (68)
T PF06305_consen 29 LLGALLGWL 37 (68)
T ss_pred HHHHHHHHH
Confidence 334433333
No 47
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=72.88 E-value=15 Score=27.80 Aligned_cols=29 Identities=7% Similarity=-0.055 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 030907 78 VDLIGEIFIFTVAGAAVIFEVQRSARSEA 106 (169)
Q Consensus 78 Ae~lgE~fIF~Va~~li~~E~~Rs~~ke~ 106 (169)
|-+.++++++....+++.....|-..++.
T Consensus 34 AGi~sq~~lv~glvgW~~sYlfRV~t~~M 62 (104)
T PF11460_consen 34 AGIWSQALLVLGLVGWVSSYLFRVVTGKM 62 (104)
T ss_pred hhHHHHHHHHHHHHHHHhHHHhhhccCCC
Confidence 45677888777678999888888776653
No 48
>PHA02047 phage lambda Rz1-like protein
Probab=72.09 E-value=39 Score=25.37 Aligned_cols=49 Identities=18% Similarity=0.272 Sum_probs=30.5
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Q 030907 97 EVQRSARSEARKEEIRKQELEALRQRDEGLARELELLRQKIE----ELEQLAK 145 (169)
Q Consensus 97 E~~Rs~~ke~~Kee~~~~~le~L~~~~~~l~~eve~l~~~i~----ele~~~~ 145 (169)
-.||..-...+.-+.+.+++|.++.++..++..+..+.++-+ |+...|.
T Consensus 24 ~~~r~~g~~h~~a~~la~qLE~a~~r~~~~Q~~V~~l~~kae~~t~Ei~~aL~ 76 (101)
T PHA02047 24 QSYRALGIAHEEAKRQTARLEALEVRYATLQRHVQAVEARTNTQRQEVDRALD 76 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335553333444455667788888888888888877776643 4444444
No 49
>PRK03100 sec-independent translocase; Provisional
Probab=71.91 E-value=39 Score=26.59 Aligned_cols=59 Identities=22% Similarity=0.329 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHH-----HHHHhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 030907 81 IGEIFIFTVAGAAVIF-----EVQRSARSEARKEEIRKQELEALRQRDE-GLARELELLRQKIEELEQ 142 (169)
Q Consensus 81 lgE~fIF~Va~~li~~-----E~~Rs~~ke~~Kee~~~~~le~L~~~~~-~l~~eve~l~~~i~ele~ 142 (169)
.+|++|.+|.+.+|+. |+.|+.-+--++=. .-..+.+++++ ++..++++++..+++++.
T Consensus 7 ~~EllvI~vVaLvv~GPkrLP~~~r~lG~~vr~~R---~~~~~~~~~~~~elg~e~~dlrk~l~el~~ 71 (136)
T PRK03100 7 WGEMLVLVVAGLVILGPERLPGAIRWTARALRQAR---DYASGATSQLREELGPEFDDLRKPLGELQK 71 (136)
T ss_pred HHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3689998888877755 56666554322211 11222333332 444556666666655544
No 50
>PHA01750 hypothetical protein
Probab=71.57 E-value=33 Score=24.21 Aligned_cols=54 Identities=24% Similarity=0.410 Sum_probs=29.2
Q ss_pred HHHHHHHHHH-HHHHHHhhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 85 FIFTVAGAAV-IFEVQRSARSEARKEE--IRKQELEALRQRDEGLARELELLRQKIE 138 (169)
Q Consensus 85 fIF~Va~~li-~~E~~Rs~~ke~~Kee--~~~~~le~L~~~~~~l~~eve~l~~~i~ 138 (169)
.+|++.-..+ +-...|.+-+|-.+.| ....+++++..+++++++++++++.+++
T Consensus 17 tlFaIiqlYlKIKq~lkdAvkeIV~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~d 73 (75)
T PHA01750 17 TLFAIIQLYLKIKQALKDAVKEIVNSELDNLKTEIEELKIKQDELSRQVEEIKRKLD 73 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 3555543333 4555566666554443 3344555666666666666666665554
No 51
>PRK04406 hypothetical protein; Provisional
Probab=70.82 E-value=23 Score=24.94 Aligned_cols=32 Identities=9% Similarity=0.073 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030907 116 LEALRQRDEGLARELELLRQKIEELEQLAKQR 147 (169)
Q Consensus 116 le~L~~~~~~l~~eve~l~~~i~ele~~~~~~ 147 (169)
+++|.+.+-+.+.++..++.+++.|.+.++..
T Consensus 27 Ie~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 27 IEELNDALSQQQLLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344444444444444444444444444443
No 52
>PRK01919 tatB sec-independent translocase; Provisional
Probab=70.79 E-value=45 Score=27.30 Aligned_cols=15 Identities=20% Similarity=0.399 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHH
Q 030907 81 IGEIFIFTVAGAAVI 95 (169)
Q Consensus 81 lgE~fIF~Va~~li~ 95 (169)
++|++|.+|.+.+|+
T Consensus 6 ~~ElliI~VVALiV~ 20 (169)
T PRK01919 6 LSKLALIGVVALVVI 20 (169)
T ss_pred HHHHHHHHHHHHhee
Confidence 468888877776664
No 53
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=70.75 E-value=39 Score=24.71 Aligned_cols=46 Identities=11% Similarity=0.169 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 87 FTVAGAAVIFEVQRSARSEARKEEIRKQELEALRQRDEGLARELELLRQKIEEL 140 (169)
Q Consensus 87 F~Va~~li~~E~~Rs~~ke~~Kee~~~~~le~L~~~~~~l~~eve~l~~~i~el 140 (169)
.+|.++++.|=+|+..+-... .+.|..+.+.|..|....+++++--
T Consensus 11 ~~v~~~i~~y~~~k~~ka~~~--------~~kL~~en~qlk~Ek~~~~~qvkn~ 56 (87)
T PF10883_consen 11 GAVVALILAYLWWKVKKAKKQ--------NAKLQKENEQLKTEKAVAETQVKNA 56 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555556655432211 3344455555555555555555443
No 54
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=69.51 E-value=22 Score=30.55 Aligned_cols=49 Identities=24% Similarity=0.411 Sum_probs=41.6
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 98 VQRSARSEARKEEIRKQELEALRQRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 98 ~~Rs~~ke~~Kee~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
..|++.+-+.++++...+...|+.+.+.|..+|+.++.++.-+.+.+..
T Consensus 206 ~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~ 254 (269)
T KOG3119|consen 206 VRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQ 254 (269)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666667888888899999999999999999999999999888864
No 55
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=69.38 E-value=63 Score=26.60 Aligned_cols=41 Identities=12% Similarity=0.212 Sum_probs=28.9
Q ss_pred CcCCCCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 030907 64 EIRPLNEEKAVQ----AAVDLIGEIFIFTVAGAAVIFEVQRSARS 104 (169)
Q Consensus 64 ~i~pL~Ee~Ave----~GAe~lgE~fIF~Va~~li~~E~~Rs~~k 104 (169)
.|+.|+...-++ ..-+|+..++-|.|.++++.+-+|+--.+
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~i~qlInFlIlv~lL~k~l~kPi~~ 75 (205)
T PRK06231 31 NVEELKSKSIINELFPNFWVFIAHLIAFSILLLLGIFLFWKPTQR 75 (205)
T ss_pred ChhhcCHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555444 24578889999999999998888876555
No 56
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=69.10 E-value=19 Score=24.38 Aligned_cols=30 Identities=20% Similarity=0.247 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 112 RKQELEALRQRDEGLARELELLRQKIEELE 141 (169)
Q Consensus 112 ~~~~le~L~~~~~~l~~eve~l~~~i~ele 141 (169)
..++++.|+.++.+.+.+.+.-+.+++..+
T Consensus 30 iEqRLa~LE~rL~~ae~ra~~ae~~~~~~k 59 (60)
T PF11471_consen 30 IEQRLAALEQRLQAAEQRAQAAEARAKQAK 59 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456777788888877777777777776543
No 57
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=69.03 E-value=47 Score=24.99 Aligned_cols=36 Identities=28% Similarity=0.427 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 111 IRKQELEALRQRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 111 ~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
.+.++++.|..+...++.++++|+...+-+++..+.
T Consensus 61 ~~~~e~~~L~~~~~~l~~ei~~L~dg~~~i~e~AR~ 96 (117)
T COG2919 61 AQQAELEKLSARNTALEAEIKDLKDGRDYIEERARS 96 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 567788899999999999999999996666666654
No 58
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=68.80 E-value=45 Score=24.72 Aligned_cols=17 Identities=18% Similarity=0.259 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 030907 84 IFIFTVAGAAVIFEVQR 100 (169)
Q Consensus 84 ~fIF~Va~~li~~E~~R 100 (169)
++++.+++|+++|.+++
T Consensus 10 ~~lvl~L~~~l~~qs~~ 26 (110)
T PF10828_consen 10 AVLVLGLGGWLWYQSQR 26 (110)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555666666666655
No 59
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=68.62 E-value=29 Score=22.42 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 111 IRKQELEALRQRDEGLARELELLR 134 (169)
Q Consensus 111 ~~~~~le~L~~~~~~l~~eve~l~ 134 (169)
...+++..|+.....|..++..|+
T Consensus 29 ~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 29 ELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444455555555555555444
No 60
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=68.60 E-value=50 Score=25.20 Aligned_cols=14 Identities=7% Similarity=0.040 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHH
Q 030907 85 FIFTVAGAAVIFEV 98 (169)
Q Consensus 85 fIF~Va~~li~~E~ 98 (169)
||-|+++|++++=+
T Consensus 6 lvvG~iiG~~~~r~ 19 (128)
T PF06295_consen 6 LVVGLIIGFLIGRL 19 (128)
T ss_pred HHHHHHHHHHHHHH
Confidence 44455555554433
No 61
>PRK02119 hypothetical protein; Provisional
Probab=68.33 E-value=26 Score=24.47 Aligned_cols=34 Identities=15% Similarity=0.084 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030907 114 QELEALRQRDEGLARELELLRQKIEELEQLAKQR 147 (169)
Q Consensus 114 ~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~~ 147 (169)
+.+++|.+-+-+.+.++..++.+++.|.+.++..
T Consensus 23 ~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 23 NLLEELNQALIEQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444444444444444455444444443
No 62
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=68.31 E-value=32 Score=22.80 Aligned_cols=33 Identities=30% Similarity=0.490 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 111 IRKQELEALRQRDEGLARELELLRQKIEELEQL 143 (169)
Q Consensus 111 ~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~ 143 (169)
...++++.|....+.|..++..++..+..|...
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 30 ELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456666778888888888888888888887654
No 63
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=68.26 E-value=27 Score=27.41 Aligned_cols=44 Identities=20% Similarity=0.369 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccc
Q 030907 112 RKQELEALRQRDEGLARELELLRQKIEELEQLAKQRGLSGIFSFK 156 (169)
Q Consensus 112 ~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~~~~~~~~~~~ 156 (169)
..+.-+.++..++.++.+++..++++++|..+|=++ +..=+|+.
T Consensus 86 LEe~ke~l~k~i~~les~~e~I~~~m~~LK~~LYaK-FgdnINLe 129 (131)
T KOG1760|consen 86 LEEKKETLEKEIEELESELESISARMDELKKVLYAK-FGDNINLE 129 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccCcc
Confidence 333445788899999999999999999999999776 44445554
No 64
>PRK00846 hypothetical protein; Provisional
Probab=68.24 E-value=32 Score=24.60 Aligned_cols=35 Identities=14% Similarity=-0.066 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 030907 114 QELEALRQRDEGLARELELLRQKIEELEQLAKQRG 148 (169)
Q Consensus 114 ~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~~~ 148 (169)
+.+++|.+.+-.++..+..++.+++.|...+++..
T Consensus 27 ~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 27 QALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444444555555555555555555555544
No 65
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=68.00 E-value=28 Score=23.80 Aligned_cols=27 Identities=15% Similarity=0.200 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 119 LRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 119 L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
.++.+++|...|-.|+.+|+.|++.++
T Consensus 16 qe~~ie~Ln~~v~~Qq~~I~~L~~~l~ 42 (69)
T PF04102_consen 16 QEDTIEELNDVVTEQQRQIDRLQRQLR 42 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555544
No 66
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=67.78 E-value=59 Score=25.67 Aligned_cols=26 Identities=4% Similarity=-0.083 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 030907 79 DLIGEIFIFTVAGAAVIFEVQRSARS 104 (169)
Q Consensus 79 e~lgE~fIF~Va~~li~~E~~Rs~~k 104 (169)
.|+..+|-|.|..+++.+-.|+--.+
T Consensus 21 ~~~~~iinflIl~~lL~~fl~kpI~~ 46 (174)
T PRK07352 21 LLETNLINLAIVIGLLYYFGRGFLGK 46 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 46678888999999988888877655
No 67
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=67.72 E-value=16 Score=26.01 Aligned_cols=51 Identities=22% Similarity=0.268 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 88 TVAGAAVIFEVQRSARSEARKEEIRKQELEALRQRDEGLARELELLRQKIE 138 (169)
Q Consensus 88 ~Va~~li~~E~~Rs~~ke~~Kee~~~~~le~L~~~~~~l~~eve~l~~~i~ 138 (169)
.|+..+++.-|....+...--.+.-.+.+++|-.+-+.++..++.++.=++
T Consensus 16 fVap~WL~lHY~sk~~~~~gLs~~d~~~L~~L~~~a~rm~eRI~tLE~ILd 66 (75)
T PF06667_consen 16 FVAPIWLILHYRSKWKSSQGLSEEDEQRLQELYEQAERMEERIETLERILD 66 (75)
T ss_pred HHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 555555566665443333322233355677777777777777777765443
No 68
>PRK00708 sec-independent translocase; Provisional
Probab=67.26 E-value=76 Score=26.75 Aligned_cols=15 Identities=13% Similarity=0.363 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHH
Q 030907 81 IGEIFIFTVAGAAVI 95 (169)
Q Consensus 81 lgE~fIF~Va~~li~ 95 (169)
++|++|.+|.+.+|+
T Consensus 6 ~~ELlvI~vVaLvV~ 20 (209)
T PRK00708 6 WSELLVIAIVLIVVV 20 (209)
T ss_pred HHHHHHHHHHHHhhc
Confidence 468888777776664
No 69
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=67.17 E-value=62 Score=25.67 Aligned_cols=27 Identities=15% Similarity=0.006 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 030907 78 VDLIGEIFIFTVAGAAVIFEVQRSARS 104 (169)
Q Consensus 78 Ae~lgE~fIF~Va~~li~~E~~Rs~~k 104 (169)
.+++..++.|.|..+++.+-+|+--.+
T Consensus 19 ~t~~~~iInFliL~~lL~~~l~~pi~~ 45 (173)
T PRK13453 19 GTVIVTVLTFIVLLALLKKFAWGPLKD 45 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368888888999999988877766555
No 70
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=67.01 E-value=61 Score=25.60 Aligned_cols=28 Identities=7% Similarity=-0.177 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 030907 77 AVDLIGEIFIFTVAGAAVIFEVQRSARS 104 (169)
Q Consensus 77 GAe~lgE~fIF~Va~~li~~E~~Rs~~k 104 (169)
+.+++.-++.|.|..+++.+-.|+--.+
T Consensus 18 ~~~~~~~~i~Flil~~lL~~~l~kpi~~ 45 (175)
T PRK14472 18 PGLIFWTAVTFVIVLLILKKIAWGPILS 45 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3567888888999988888877776665
No 71
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=66.86 E-value=55 Score=25.01 Aligned_cols=59 Identities=14% Similarity=0.103 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 78 VDLIGEIFIFTVAGAAVIFEVQRSARSEA-RKEEIRKQELEALRQRDEGLARELELLRQK 136 (169)
Q Consensus 78 Ae~lgE~fIF~Va~~li~~E~~Rs~~ke~-~Kee~~~~~le~L~~~~~~l~~eve~l~~~ 136 (169)
.+++..++.|.|...++.+-+|+--.+-- .+++...+.+++.+...++-+..++..+.+
T Consensus 5 ~~~~~~~i~Flil~~il~~~~~~pi~~~l~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~ 64 (156)
T PRK05759 5 GTLIGQLIAFLILVWFIMKFVWPPIMKALEERQKKIADGLAAAERAKKELELAQAKYEAQ 64 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888888888888777766655522 223333444444333333333333333333
No 72
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=66.52 E-value=63 Score=25.50 Aligned_cols=59 Identities=10% Similarity=0.077 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 79 DLIGEIFIFTVAGAAVIFEVQRSARSEA-RKEEIRKQELEALRQRDEGLARELELLRQKI 137 (169)
Q Consensus 79 e~lgE~fIF~Va~~li~~E~~Rs~~ke~-~Kee~~~~~le~L~~~~~~l~~eve~l~~~i 137 (169)
+++..++.|++..+++.+-.|+--.+-- .+.+...+.+++-++...+.+...++..+++
T Consensus 8 ~~~~~~i~F~ill~ll~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~l 67 (161)
T COG0711 8 NILWQLIAFVILLWLLKKFVWKPILKALDERQAKIADDLAEAERLKEEAQALLAEYEQEL 67 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3899999999999999999887666532 2333344444444443333333333333333
No 73
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=66.36 E-value=6.7 Score=24.16 Aligned_cols=20 Identities=10% Similarity=0.124 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHhhhhHHHH
Q 030907 89 VAGAAVIFEVQRSARSEARK 108 (169)
Q Consensus 89 Va~~li~~E~~Rs~~ke~~K 108 (169)
|=++++|+||+|..++...+
T Consensus 9 ~YAt~lI~dyfr~~K~rk~~ 28 (35)
T PF08763_consen 9 FYATLLIQDYFRQFKKRKEQ 28 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34678899999998864433
No 74
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=66.30 E-value=64 Score=25.55 Aligned_cols=27 Identities=11% Similarity=0.213 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 030907 78 VDLIGEIFIFTVAGAAVIFEVQRSARS 104 (169)
Q Consensus 78 Ae~lgE~fIF~Va~~li~~E~~Rs~~k 104 (169)
.|++..++-|.|..+++.+-.|+--.+
T Consensus 23 ~~~~~~~inflil~~lL~~fl~kPi~~ 49 (167)
T PRK08475 23 YDIIERTINFLIFVGILWYFAAKPLKN 49 (167)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888999888888888776665
No 75
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=66.02 E-value=31 Score=23.20 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 112 RKQELEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 112 ~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
...++..+...++.+..+.++++..++.+++-.+
T Consensus 5 lEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk 38 (55)
T PF05377_consen 5 LENELPRIESSINTVKKENEEISESVEKIEENVK 38 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666677777777777777777776654
No 76
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=65.47 E-value=20 Score=24.58 Aligned_cols=38 Identities=13% Similarity=0.275 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 030907 111 IRKQELEALRQRDEGLARELELLRQKIEELEQLAKQRG 148 (169)
Q Consensus 111 ~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~~~ 148 (169)
-+.+.+++|.+.+-+.++++..|+.+++.|.+.+++..
T Consensus 15 ~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 15 FQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45667788888888888888888888888888887653
No 77
>PRK00736 hypothetical protein; Provisional
Probab=64.48 E-value=34 Score=23.52 Aligned_cols=35 Identities=17% Similarity=0.252 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030907 113 KQELEALRQRDEGLARELELLRQKIEELEQLAKQR 147 (169)
Q Consensus 113 ~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~~ 147 (169)
.+.+++|.+-+-+.++++..++.+++.|.+.++..
T Consensus 18 e~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00736 18 EKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSL 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444455555555555555555555555555443
No 78
>PRK04325 hypothetical protein; Provisional
Probab=64.47 E-value=32 Score=24.02 Aligned_cols=33 Identities=18% Similarity=0.258 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030907 115 ELEALRQRDEGLARELELLRQKIEELEQLAKQR 147 (169)
Q Consensus 115 ~le~L~~~~~~l~~eve~l~~~i~ele~~~~~~ 147 (169)
.+++|.+-+-+.+.++..++.+++.|.+.++..
T Consensus 24 tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 24 LIDGLNATVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444444444444443
No 79
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=64.35 E-value=46 Score=27.86 Aligned_cols=7 Identities=14% Similarity=0.273 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 030907 133 LRQKIEE 139 (169)
Q Consensus 133 l~~~i~e 139 (169)
++.++.+
T Consensus 82 q~~el~~ 88 (251)
T PF11932_consen 82 QEQELAS 88 (251)
T ss_pred HHHHHHH
Confidence 3333333
No 80
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=64.25 E-value=71 Score=25.34 Aligned_cols=34 Identities=35% Similarity=0.463 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 113 KQELEALRQRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 113 ~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
.+-+.+..++++++..+++.++.+++.++..++.
T Consensus 45 E~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 78 (151)
T PF14584_consen 45 EDLLNELFDQIDELKEELEELEKRIEELEEKLRN 78 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456667788899999999999999999998864
No 81
>PRK02793 phi X174 lysis protein; Provisional
Probab=64.07 E-value=36 Score=23.68 Aligned_cols=33 Identities=21% Similarity=0.232 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030907 115 ELEALRQRDEGLARELELLRQKIEELEQLAKQR 147 (169)
Q Consensus 115 ~le~L~~~~~~l~~eve~l~~~i~ele~~~~~~ 147 (169)
.+++|.+-+-+.+.++..++.+++.|.+.++..
T Consensus 23 tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 23 TIEELNVTVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444444444444444444443
No 82
>KOG4253 consensus Tryptophan-rich basic nuclear protein [General function prediction only]
Probab=63.85 E-value=24 Score=28.85 Aligned_cols=38 Identities=18% Similarity=0.432 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHH-H----HHHhhhhHHHHHHHHHHHHHHHH
Q 030907 83 EIFIFTVAGAAVIF-E----VQRSARSEARKEEIRKQELEALR 120 (169)
Q Consensus 83 E~fIF~Va~~li~~-E----~~Rs~~ke~~Kee~~~~~le~L~ 120 (169)
=-|+|++...=++. + ..|...|+++||.+...|+.+++
T Consensus 15 l~Fl~~~nk~r~l~~s~~i~~s~~~nkdakk~~q~~~ei~dmK 57 (175)
T KOG4253|consen 15 LKFLFGCNKLRILLPSFSIFMSRVGNKDAKKESQKVAEIQDMK 57 (175)
T ss_pred HHHHHhhhHhheecchhhhhhhcccchhHHHHHHHHHHHHHHH
Confidence 34555655542222 3 34677777777765544444433
No 83
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=63.68 E-value=11 Score=28.06 Aligned_cols=34 Identities=12% Similarity=0.087 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 030907 78 VDLIGEIFIFTVAGAAVIFEVQRSARSEARKEEI 111 (169)
Q Consensus 78 Ae~lgE~fIF~Va~~li~~E~~Rs~~ke~~Kee~ 111 (169)
++.+.-++.|.+..++.+|=.+|..+|..++.++
T Consensus 6 ~~~~~~ll~~vl~~~ifyFli~RPQrKr~K~~~~ 39 (97)
T COG1862 6 GSGLVLLLPLVLIFAIFYFLIIRPQRKRMKEHQE 39 (97)
T ss_pred cccHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 4566667777777777777788888876555433
No 84
>PRK11637 AmiB activator; Provisional
Probab=63.61 E-value=43 Score=30.18 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 119 LRQRDEGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 119 L~~~~~~l~~eve~l~~~i~ele~~~ 144 (169)
++.+++.++.++..++.+|++.+..+
T Consensus 101 ~~~ei~~l~~eI~~~q~~l~~~~~~l 126 (428)
T PRK11637 101 LNKQIDELNASIAKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444443333
No 85
>PF06720 Phi-29_GP16_7: Bacteriophage phi-29 early protein GP16.7; InterPro: IPR009595 The early-expressed gene 16.7 is conserved in bacteriophage phi-29 and related phages. It encodes a membrane protein, GP16.7, consisting of an N-terminal transmembrane domain and a C-terminal DNA-binding and dimerisation domain. GP16.7 plays an important role in organising membrane-associated bacteriophage DNA replication [, ]. The C-terminal domain has a similar secondary structure similar to homeodomains, but forms a fundamentally different tertiary structure consisting of a six-helical dimeric fold []. Multimerisation of this dimer leads to efficient DNA binding.; PDB: 2C5R_B 2BNK_A 1ZAE_B.
Probab=63.29 E-value=2.7 Score=32.49 Aligned_cols=64 Identities=22% Similarity=0.308 Sum_probs=3.5
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccc
Q 030907 87 FTVAGAAVIFEVQRSARSEARKEEIRKQELEALRQRDEGLARELELLRQKIEELEQLAKQRGLSGIFSFKH 157 (169)
Q Consensus 87 F~Va~~li~~E~~Rs~~ke~~Kee~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~~~~~~~~~~~~ 157 (169)
.||...+++|-.+- ++..++++. .++++-+++|...+....+.+++|.+.+.+++..+-.|..+
T Consensus 7 ~g~l~~~~if~~sg--~n~~~~~E~-----~e~edyiEdL~k~i~q~~qil~elne~i~nR~id~t~~~s~ 70 (130)
T PF06720_consen 7 IGVLFLCVIFLLSG--RNNKKKQEA-----RELEDYIEDLNKRIQQRTQILSELNEVIYNRSIDKTVNLSA 70 (130)
T ss_dssp ---------------------------------------------------------------SS-SSS-H
T ss_pred HHHHHHHHHHHhcC--cCccchHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchhHHH
Confidence 46655555554443 332333333 24556678888888888889999999998887766665543
No 86
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=62.96 E-value=1.1e+02 Score=28.14 Aligned_cols=27 Identities=26% Similarity=0.206 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 030907 78 VDLIGEIFIFTVAGAAVIFEVQRSARS 104 (169)
Q Consensus 78 Ae~lgE~fIF~Va~~li~~E~~Rs~~k 104 (169)
++|++.++-|.|..+++.+-.|+--.+
T Consensus 2 ~t~i~qlInFlIl~~lL~kfl~~Pi~~ 28 (445)
T PRK13428 2 STFIGQLIGFAVIVFLVWRFVVPPVRR 28 (445)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999988877765554
No 87
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.68 E-value=43 Score=28.96 Aligned_cols=31 Identities=29% Similarity=0.394 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 111 IRKQELEALRQRDEGLARELELLRQKIEELE 141 (169)
Q Consensus 111 ~~~~~le~L~~~~~~l~~eve~l~~~i~ele 141 (169)
.+.+++..++++.++|..++++++..++..+
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666667777777766666665443
No 88
>PRK00846 hypothetical protein; Provisional
Probab=62.68 E-value=39 Score=24.15 Aligned_cols=27 Identities=19% Similarity=0.086 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 120 RQRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 120 ~~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
++.+++|...+-.++..|+.|.+.++.
T Consensus 26 e~tIe~LN~~v~~qq~~I~~L~~ql~~ 52 (77)
T PRK00846 26 EQALTELSEALADARLTGARNAELIRH 52 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334677777777788888888877764
No 89
>PRK09458 pspB phage shock protein B; Provisional
Probab=62.26 E-value=23 Score=25.27 Aligned_cols=51 Identities=14% Similarity=0.204 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 88 TVAGAAVIFEVQRSARSEARKEEIRKQELEALRQRDEGLARELELLRQKIE 138 (169)
Q Consensus 88 ~Va~~li~~E~~Rs~~ke~~Kee~~~~~le~L~~~~~~l~~eve~l~~~i~ 138 (169)
.||-.+++.-|.-..+...--.+.-.+++++|-++-+.++..++.++.=++
T Consensus 16 fVaPiWL~LHY~sk~~~~~~Ls~~d~~~L~~L~~~A~rm~~RI~tLE~ILD 66 (75)
T PRK09458 16 FVAPIWLWLHYRSKRQGSQGLSQEEQQRLAQLTEKAERMRERIQALEAILD 66 (75)
T ss_pred HHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 455555666655333332222233345666777777777777777665443
No 90
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=62.15 E-value=34 Score=32.20 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 121 QRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 121 ~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
.+.++++.++++++++++.|+..+.+
T Consensus 97 aq~~dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 97 KQRGDDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 44456667777777777777777654
No 91
>PRK00736 hypothetical protein; Provisional
Probab=62.12 E-value=40 Score=23.19 Aligned_cols=33 Identities=12% Similarity=0.160 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 114 QELEALRQRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 114 ~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
.++.-.++.+++|...|-.|+.+|+.|++.++.
T Consensus 12 ~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~ 44 (68)
T PRK00736 12 IRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDA 44 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566777777777788888888777765
No 92
>PRK00295 hypothetical protein; Provisional
Probab=61.97 E-value=40 Score=23.17 Aligned_cols=33 Identities=15% Similarity=0.015 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030907 115 ELEALRQRDEGLARELELLRQKIEELEQLAKQR 147 (169)
Q Consensus 115 ~le~L~~~~~~l~~eve~l~~~i~ele~~~~~~ 147 (169)
++.-.++.+++|...|-.|+.+|+.|++.++..
T Consensus 13 kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L 45 (68)
T PRK00295 13 RQAFQDDTIQALNDVLVEQQRVIERLQLQMAAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455667888888888888888888777653
No 93
>PRK00182 tatB sec-independent translocase; Provisional
Probab=61.07 E-value=80 Score=25.60 Aligned_cols=16 Identities=38% Similarity=0.582 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 030907 81 IGEIFIFTVAGAAVIF 96 (169)
Q Consensus 81 lgE~fIF~Va~~li~~ 96 (169)
.+|++|..|.+.+|+.
T Consensus 7 ~~EllvIlvIaLlVfG 22 (160)
T PRK00182 7 WGEILLLLIVGLIVIG 22 (160)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 3588888877777754
No 94
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=60.83 E-value=40 Score=21.51 Aligned_cols=34 Identities=26% Similarity=0.429 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 112 RKQELEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 112 ~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
.+...+.|...-+.|..+.+.|++++..|...+.
T Consensus 10 LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 10 LKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445567777778888888888888887776553
No 95
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=60.50 E-value=78 Score=25.71 Aligned_cols=35 Identities=37% Similarity=0.530 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 111 IRKQELEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 111 ~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
....++++|+.+++.|+.+++.+..++..+++-.+
T Consensus 108 ~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~ 142 (161)
T TIGR02894 108 RLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQ 142 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677888888888888888877777665444
No 96
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=60.04 E-value=62 Score=26.82 Aligned_cols=36 Identities=36% Similarity=0.518 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 111 IRKQELEALRQRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 111 ~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
..+.+++.++.+++.+..+++..+.+++++.+.+..
T Consensus 67 ~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~ 102 (302)
T PF10186_consen 67 ELRERLERLRERIERLRKRIEQKRERLEELRESLEQ 102 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555566666666666666666666666666644
No 97
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=59.85 E-value=40 Score=29.88 Aligned_cols=37 Identities=32% Similarity=0.409 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 109 EEIRKQELEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 109 ee~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
+++++.+.|++..+.+.|+++.+.|+.+..++|+-.+
T Consensus 243 RqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ 279 (294)
T KOG4571|consen 243 RQKKRAEKEALLGELEGLEKRNEELKDQASELEREIR 279 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777788888888888888888776554
No 98
>PRK04325 hypothetical protein; Provisional
Probab=59.75 E-value=44 Score=23.32 Aligned_cols=31 Identities=13% Similarity=0.113 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030907 117 EALRQRDEGLARELELLRQKIEELEQLAKQR 147 (169)
Q Consensus 117 e~L~~~~~~l~~eve~l~~~i~ele~~~~~~ 147 (169)
.-.++.+++|...+-.|+.+|+.|++.++..
T Consensus 19 AfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L 49 (74)
T PRK04325 19 AFQEDLIDGLNATVARQQQTLDLLQAQLRLL 49 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355567777777778888888888777653
No 99
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=59.73 E-value=1.3e+02 Score=27.45 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 123 DEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 123 ~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
+..++.++..+..++.+|++.+..
T Consensus 101 l~~~e~~~~~l~~q~~~Lq~~~~~ 124 (390)
T PRK10920 101 LDQANRQQAALAKQLDELQQKVAT 124 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455566666666677666654
No 100
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=59.42 E-value=28 Score=26.02 Aligned_cols=27 Identities=26% Similarity=0.494 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 030907 112 RKQELEALRQRDEG----LARELELLRQKIE 138 (169)
Q Consensus 112 ~~~~le~L~~~~~~----l~~eve~l~~~i~ 138 (169)
+.++|+.|++++++ .+.++++++..|+
T Consensus 70 EkEqL~~Lk~kl~~e~~~~~k~i~~le~~I~ 100 (100)
T PF04568_consen 70 EKEQLKKLKEKLKEEIEHHRKEIDELEKHIE 100 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34455565565555 8888888888774
No 101
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.23 E-value=57 Score=23.14 Aligned_cols=38 Identities=16% Similarity=0.190 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030907 110 EIRKQELEALRQRDEGLARELELLRQKIEELEQLAKQR 147 (169)
Q Consensus 110 e~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~~ 147 (169)
.-+.+.+++|...+-+....++.++.+++.|-..++.+
T Consensus 18 AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~ 55 (72)
T COG2900 18 AFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDL 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35567788888888899999999999999888888765
No 102
>COG3750 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.58 E-value=40 Score=24.50 Aligned_cols=37 Identities=27% Similarity=0.354 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 030907 113 KQELEALRQRDEGLARELELLRQKIEELEQLAKQRGL 149 (169)
Q Consensus 113 ~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~~~~ 149 (169)
..+|.++-.+++.|+.|...+..++.+.-.-+++.|+
T Consensus 13 ~~QLrafIerIERlEeEk~~i~~dikdvy~eakg~GF 49 (85)
T COG3750 13 AGQLRAFIERIERLEEEKKTIADDIKDVYAEAKGHGF 49 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 4567788889999999999999999998888888774
No 103
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=58.50 E-value=56 Score=28.72 Aligned_cols=31 Identities=48% Similarity=0.583 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 110 EIRKQELEALRQRDEGLARELELLRQKIEEL 140 (169)
Q Consensus 110 e~~~~~le~L~~~~~~l~~eve~l~~~i~el 140 (169)
+...+++++|+++.+++..++..++.+.+++
T Consensus 60 ~~l~~eL~~LE~e~~~l~~el~~le~e~~~l 90 (314)
T PF04111_consen 60 EELLQELEELEKEREELDQELEELEEELEEL 90 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555444
No 104
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=57.91 E-value=86 Score=24.25 Aligned_cols=27 Identities=11% Similarity=0.070 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 030907 78 VDLIGEIFIFTVAGAAVIFEVQRSARS 104 (169)
Q Consensus 78 Ae~lgE~fIF~Va~~li~~E~~Rs~~k 104 (169)
.+|+..++.|.|..+++.+-.|+--.+
T Consensus 6 ~~~~~~~inF~il~~iL~~f~~kpi~~ 32 (159)
T PRK13461 6 PTIIATIINFIILLLILKHFFFDKIKA 32 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 368888889999999887777766555
No 105
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=57.61 E-value=1.1e+02 Score=25.52 Aligned_cols=27 Identities=11% Similarity=0.050 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 030907 78 VDLIGEIFIFTVAGAAVIFEVQRSARS 104 (169)
Q Consensus 78 Ae~lgE~fIF~Va~~li~~E~~Rs~~k 104 (169)
.+++..++-|.|..+++.+-.|+--.+
T Consensus 6 ~t~~~qiInFlil~~lL~kfl~kPi~~ 32 (246)
T TIGR03321 6 FTVIAQLINFLILVWLLKRFLYRPILD 32 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 468899999999999998888776555
No 106
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=57.31 E-value=27 Score=24.61 Aligned_cols=30 Identities=23% Similarity=0.359 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 113 KQELEALRQRDEGLARELELLRQKIEELEQ 142 (169)
Q Consensus 113 ~~~le~L~~~~~~l~~eve~l~~~i~ele~ 142 (169)
+++++....-+..+...++.|.+++.+||.
T Consensus 49 REEFd~q~~~L~~~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 49 REEFDAQKAVLARTREKLEALEARLAALEA 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445566666666666777777777777664
No 107
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=56.81 E-value=46 Score=24.48 Aligned_cols=57 Identities=19% Similarity=0.390 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 83 EIFIFTVAGAAVIFEVQRSARSEA--RKEEIRKQELEALRQRDEGLARELELLRQKIEEL 140 (169)
Q Consensus 83 E~fIF~Va~~li~~E~~Rs~~ke~--~Kee~~~~~le~L~~~~~~l~~eve~l~~~i~el 140 (169)
+.-+|-..|+++ .+..+.--.+. .+-+....+++.++.+.+.++..+++++.+++++
T Consensus 49 d~~vyk~VG~vl-v~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 49 DTPVYKSVGNLL-VKTDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred cchhHHHhchhh-heecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445664444433 23222222222 3334557778888888888888888888888765
No 108
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=56.70 E-value=24 Score=25.13 Aligned_cols=45 Identities=22% Similarity=0.338 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCCCccccccc
Q 030907 114 QELEALRQRDEGLARELELLRQKIEELEQLAKQ------RGLSGIFSFKHA 158 (169)
Q Consensus 114 ~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~------~~~~~~~~~~~~ 158 (169)
++|.++-.+...|+.++..++.+|-.+|-..-. +=+.||-||--+
T Consensus 2 ~~L~~l~~~k~~Le~~L~~lE~qIy~~Et~YL~~~~~~GNiikGfd~y~k~ 52 (80)
T PF09340_consen 2 KELKELLQKKKKLEKDLAALEKQIYDKETSYLEDTSPYGNIIKGFDGYLKS 52 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCCeeChhhhhcc
Confidence 456677788888999999999999999876633 213666666433
No 109
>PF10073 DUF2312: Uncharacterized protein conserved in bacteria (DUF2312); InterPro: IPR018753 This entry is represented by Azospirillum phage Cd, Gp10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family of hypothetical bacterial proteins have no known function.
Probab=56.65 E-value=46 Score=23.68 Aligned_cols=36 Identities=25% Similarity=0.370 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 030907 114 QELEALRQRDEGLARELELLRQKIEELEQLAKQRGL 149 (169)
Q Consensus 114 ~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~~~~ 149 (169)
++|..+-++++.|+.|...+..+++++-.-.++.|.
T Consensus 4 ~~Lr~~ieRiErLEeEk~~i~~dikdVyaEAK~~Gf 39 (74)
T PF10073_consen 4 EQLRQFIERIERLEEEKKAISDDIKDVYAEAKGNGF 39 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 456677788899999999999999999888888874
No 110
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=56.65 E-value=1e+02 Score=24.59 Aligned_cols=23 Identities=9% Similarity=0.063 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 77 AVDLIGEIFIFTVAGAAVIFEVQR 100 (169)
Q Consensus 77 GAe~lgE~fIF~Va~~li~~E~~R 100 (169)
+.++ .+++.|.|..+++.|-.|+
T Consensus 27 ~t~~-~~~inflil~~iL~~f~~~ 49 (184)
T PRK13455 27 NTDF-VVTLAFLLFIGILVYFKVP 49 (184)
T ss_pred chHH-HHHHHHHHHHHHHHHHhcc
Confidence 3444 5778888888888777654
No 111
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.56 E-value=1.3e+02 Score=25.98 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 030907 115 ELEALRQRDEGLARELELLR 134 (169)
Q Consensus 115 ~le~L~~~~~~l~~eve~l~ 134 (169)
+..+|..++++++..+...+
T Consensus 65 ~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 65 KVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555544444
No 112
>PRK09343 prefoldin subunit beta; Provisional
Probab=55.76 E-value=62 Score=24.46 Aligned_cols=36 Identities=22% Similarity=0.293 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 110 EIRKQELEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 110 e~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
+-...+++.|+.+.+.++..++.++..|+++-+-..
T Consensus 81 E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~~ 116 (121)
T PRK09343 81 ELLELRSRTLEKQEKKLREKLKELQAKINEMLSKYY 116 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344577888999999999999999988887755443
No 113
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=55.08 E-value=61 Score=29.72 Aligned_cols=52 Identities=17% Similarity=0.281 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 91 GAAVIFEVQRSARSEARKEEIRKQELEALRQRDEGLARELELLRQKIEELEQ 142 (169)
Q Consensus 91 ~~li~~E~~Rs~~ke~~Kee~~~~~le~L~~~~~~l~~eve~l~~~i~ele~ 142 (169)
-+.+.=+|.|.........+..+++...++.+-++|..+-..-+.+|++|++
T Consensus 57 ~~~v~~q~~~~q~q~~~~~~~e~~r~~~~~~~aeel~~~~~~eq~rlk~le~ 108 (387)
T PRK09510 57 PGAVVEQYNRQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEK 108 (387)
T ss_pred hHHHHHHHHHHHHhHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777665544333344455666777777777777777777777654
No 114
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=55.05 E-value=99 Score=24.05 Aligned_cols=27 Identities=15% Similarity=-0.004 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 030907 78 VDLIGEIFIFTVAGAAVIFEVQRSARS 104 (169)
Q Consensus 78 Ae~lgE~fIF~Va~~li~~E~~Rs~~k 104 (169)
..|+..++.|.|..+++.+-+|+--.+
T Consensus 9 ~~~~~~~inflil~~lL~~fl~kpi~~ 35 (164)
T PRK14473 9 GLLIAQLINFLLLIFLLRTFLYRPVLN 35 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468889999999999998888887665
No 115
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=55.02 E-value=65 Score=21.95 Aligned_cols=55 Identities=22% Similarity=0.235 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 030907 84 IFIFTVAGAAVIFEVQRSARSEARKEEIRKQELEALRQRDEGLARELEL-LRQKIEE 139 (169)
Q Consensus 84 ~fIF~Va~~li~~E~~Rs~~ke~~Kee~~~~~le~L~~~~~~l~~eve~-l~~~i~e 139 (169)
.|++|.++|.++.=+.-...-..-+ +...+..+++.++.+++..+..+ .+.+.++
T Consensus 4 g~l~Ga~~Ga~~glL~aP~sG~e~R-~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~~ 59 (74)
T PF12732_consen 4 GFLAGAAAGAAAGLLFAPKSGKETR-EKLKDKAEDLKDKAKDLYEEAKEKVKEKAEE 59 (74)
T ss_pred HHHHHHHHHHHHHHHhCCCCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666655554332222222 23344555566666555555444 4444444
No 116
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=54.98 E-value=48 Score=24.14 Aligned_cols=33 Identities=21% Similarity=0.252 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 113 KQELEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 113 ~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
.+.++.++.++..|+..+..|+.-..+||..++
T Consensus 65 l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k 97 (99)
T PF10046_consen 65 LQQIDQIEEQVTELEQTVYELDEYSKELESKFK 97 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555666777777777777777777766554
No 117
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=54.77 E-value=76 Score=23.30 Aligned_cols=30 Identities=30% Similarity=0.458 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 111 IRKQELEALRQRDEGLARELELLRQKIEEL 140 (169)
Q Consensus 111 ~~~~~le~L~~~~~~l~~eve~l~~~i~el 140 (169)
....++..|..+++.|..++..+...+..+
T Consensus 78 ~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~ 107 (126)
T PF13863_consen 78 EKEAEIKKLKAELEELKSEISKLEEKLEEY 107 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555554443
No 118
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=54.67 E-value=57 Score=23.83 Aligned_cols=36 Identities=36% Similarity=0.511 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 111 IRKQELEALRQRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 111 ~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
-...+++.++.+++.++.++..++.++.+++..+..
T Consensus 91 ~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~ 126 (129)
T cd00890 91 FLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQ 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667777777777777777777777766543
No 119
>PRK14127 cell division protein GpsB; Provisional
Probab=54.00 E-value=47 Score=25.17 Aligned_cols=32 Identities=25% Similarity=0.415 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 114 QELEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 114 ~~le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
+..+.+..++.+|..++..++.++++++..+.
T Consensus 37 ~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 37 KDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34455556666666666666666666666554
No 120
>PRK13694 hypothetical protein; Provisional
Probab=53.64 E-value=58 Score=23.71 Aligned_cols=37 Identities=30% Similarity=0.411 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 030907 113 KQELEALRQRDEGLARELELLRQKIEELEQLAKQRGL 149 (169)
Q Consensus 113 ~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~~~~ 149 (169)
.++|..+-.+++.|+.|...+..++++.-.-.+++|.
T Consensus 11 ~~~Lr~fIERIERLEeEkk~i~~dikdVyaEAK~~Gf 47 (83)
T PRK13694 11 KEQLRAFIERIERLEEEKKTISDDIKDVYAEAKGNGF 47 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4566777888999999999999999998888888774
No 121
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.10 E-value=45 Score=33.68 Aligned_cols=6 Identities=33% Similarity=0.274 Sum_probs=2.4
Q ss_pred HHHHHH
Q 030907 45 NHRITT 50 (169)
Q Consensus 45 ~h~~e~ 50 (169)
+|-+|+
T Consensus 255 m~liem 260 (1118)
T KOG1029|consen 255 MHLIEM 260 (1118)
T ss_pred HHHHHH
Confidence 334443
No 122
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=52.72 E-value=1.1e+02 Score=23.81 Aligned_cols=27 Identities=4% Similarity=-0.132 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 030907 78 VDLIGEIFIFTVAGAAVIFEVQRSARS 104 (169)
Q Consensus 78 Ae~lgE~fIF~Va~~li~~E~~Rs~~k 104 (169)
.+++..++.|.|...++..-.|+--.+
T Consensus 9 ~~~~~~~i~Flil~~ll~~~l~~pi~~ 35 (164)
T PRK14471 9 GLFFWQTILFLILLLLLAKFAWKPILG 35 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 588899999999888887777766555
No 123
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=52.41 E-value=1.5e+02 Score=25.20 Aligned_cols=27 Identities=7% Similarity=0.037 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 030907 78 VDLIGEIFIFTVAGAAVIFEVQRSARS 104 (169)
Q Consensus 78 Ae~lgE~fIF~Va~~li~~E~~Rs~~k 104 (169)
.+++..++-|.|...++.+-.|+--.+
T Consensus 6 ~t~~~qiInFlILv~lL~~fl~kPi~~ 32 (250)
T PRK14474 6 FTVVAQIINFLILVYLLRRFLYKPIIQ 32 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999998888876655
No 124
>PRK02119 hypothetical protein; Provisional
Probab=51.88 E-value=79 Score=22.01 Aligned_cols=33 Identities=12% Similarity=0.048 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030907 115 ELEALRQRDEGLARELELLRQKIEELEQLAKQR 147 (169)
Q Consensus 115 ~le~L~~~~~~l~~eve~l~~~i~ele~~~~~~ 147 (169)
++.-.++.+++|...|-.++.+|+.|++.++..
T Consensus 17 rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L 49 (73)
T PRK02119 17 KIAFQENLLEELNQALIEQQFVIDKMQVQLRYM 49 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455667888888888888888888888753
No 125
>PRK04406 hypothetical protein; Provisional
Probab=51.23 E-value=83 Score=22.08 Aligned_cols=29 Identities=21% Similarity=0.120 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030907 119 LRQRDEGLARELELLRQKIEELEQLAKQR 147 (169)
Q Consensus 119 L~~~~~~l~~eve~l~~~i~ele~~~~~~ 147 (169)
.++.+++|...|-.|+.+|+.|++.++..
T Consensus 23 QE~tIe~LN~~v~~Qq~~I~~L~~ql~~L 51 (75)
T PRK04406 23 QEQTIEELNDALSQQQLLITKMQDQMKYV 51 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888888888888899988888754
No 126
>PRK02793 phi X174 lysis protein; Provisional
Probab=51.13 E-value=81 Score=21.88 Aligned_cols=31 Identities=10% Similarity=-0.008 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030907 117 EALRQRDEGLARELELLRQKIEELEQLAKQR 147 (169)
Q Consensus 117 e~L~~~~~~l~~eve~l~~~i~ele~~~~~~ 147 (169)
.-.++.+++|...|-.|+.+|+.|++.++..
T Consensus 18 afQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L 48 (72)
T PRK02793 18 AFQEITIEELNVTVTAHEMEMAKLRDHLRLL 48 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355567888888888888888888888754
No 127
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=50.99 E-value=55 Score=28.24 Aligned_cols=34 Identities=26% Similarity=0.411 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030907 114 QELEALRQRDEGLARELELLRQKIEELEQLAKQR 147 (169)
Q Consensus 114 ~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~~ 147 (169)
+++..|+.+-.++..++..++++|.+.+..|..+
T Consensus 180 eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~ 213 (259)
T PF08657_consen 180 EKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERM 213 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666667777776666666554
No 128
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=50.97 E-value=44 Score=26.76 Aligned_cols=26 Identities=35% Similarity=0.524 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 115 ELEALRQRDEGLARELELLRQKIEEL 140 (169)
Q Consensus 115 ~le~L~~~~~~l~~eve~l~~~i~el 140 (169)
++++++++++..+.+++.++.|.+.+
T Consensus 162 ei~~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 162 EIEKLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444433
No 129
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=50.96 E-value=1.8e+02 Score=25.81 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 120 RQRDEGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 120 ~~~~~~l~~eve~l~~~i~ele~~~ 144 (169)
++.+.++.+.+++++.+|+.++..+
T Consensus 80 ~~si~~q~~~i~~l~~~i~~l~~~i 104 (301)
T PF06120_consen 80 EESIAAQKRAIEDLQKKIDSLKDQI 104 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555555555555554444
No 130
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=50.95 E-value=72 Score=23.15 Aligned_cols=37 Identities=32% Similarity=0.408 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 110 EIRKQELEALRQRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 110 e~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
....++++.++.+++.+...++.+..++.+++..++.
T Consensus 66 ~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 66 TELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888888889999999999988888887764
No 131
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=50.93 E-value=75 Score=22.31 Aligned_cols=35 Identities=23% Similarity=0.411 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 112 RKQELEALRQRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 112 ~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
...+.+.++.+++.+....+.+..++.+++..+..
T Consensus 67 L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 67 LEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYE 101 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566667777777777777777777766654
No 132
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=50.85 E-value=1.1e+02 Score=28.92 Aligned_cols=44 Identities=23% Similarity=0.370 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccc
Q 030907 111 IRKQELEALRQRDEGLARELELLRQKIEELEQLAKQRGLSGIFS 154 (169)
Q Consensus 111 ~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~~~~~~~~~ 154 (169)
...+.+++|+....+....++.++..+.++.+.+...++||+-.
T Consensus 401 ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~ 444 (569)
T PRK04778 401 KLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPE 444 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcH
Confidence 44556667777777777888888888999999999988999843
No 133
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=50.83 E-value=70 Score=23.06 Aligned_cols=16 Identities=19% Similarity=0.183 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 030907 108 KEEIRKQELEALRQRD 123 (169)
Q Consensus 108 Kee~~~~~le~L~~~~ 123 (169)
|-.+.+.++.+|+.+.
T Consensus 16 Kiae~Q~rlK~Le~qk 31 (83)
T PF14193_consen 16 KIAELQARLKELEAQK 31 (83)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444443
No 134
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=50.71 E-value=81 Score=29.77 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 116 LEALRQRDEGLARELELLRQKIEEL 140 (169)
Q Consensus 116 le~L~~~~~~l~~eve~l~~~i~el 140 (169)
.+++++++++++.+++.|+.+++.+
T Consensus 99 ~~dle~KIkeLEaE~~~Lk~Ql~a~ 123 (475)
T PRK13729 99 RGDDQRRIEKLGQDNAALAEQVKAL 123 (475)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456666666666666666666443
No 135
>PF12335 SBF2: Myotubularin protein ; InterPro: IPR022096 This domain family is found in eukaryotes, and is approximately 220 amino acids in length. The family is found in association with PF02141 from PFAM, PF03456 from PFAM, PF03455 from PFAM. This family is the middle region of SBF2, a member of the myotubularin family. Myotubularin-related proteins have been suggested to work in phosphoinositide-mediated signalling events that may also convey control of myelination. Mutations of SBF2 are implicated in Charcot-Marie-Tooth disease.
Probab=50.28 E-value=65 Score=27.28 Aligned_cols=74 Identities=16% Similarity=0.121 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhChhhhHhhhchhHHHHHHHHHHhhHHhcCC--------CCCCcCCCCHHHHHHHH
Q 030907 6 VKLGTLALKTLSKPVAAKLKQQAAIHPRFRQSIVGIAQANHRITTRMQRRIYGHA--------TGGEIRPLNEEKAVQAA 77 (169)
Q Consensus 6 ~KL~~L~iR~iSKPian~iK~~A~~~p~fR~~~i~~gq~~h~~e~rl~~~~lg~~--------~~~~i~pL~Ee~Ave~G 77 (169)
..+.+.+-|.++.++--++-..-+.||.|.+..-+=+-+|+.+...++....... .....-.-+|..|+++.
T Consensus 109 L~ls~~fyrkl~~g~~eylyt~i~~hpvW~n~~FWe~~F~~~vq~~ir~ly~~~~~~~~~~~~~~~~~~~~~E~sal~ia 188 (225)
T PF12335_consen 109 LPLSTAFYRKLSNGVQEYLYTCIQSHPVWQNQRFWEAAFFDDVQSQIRKLYLSPQEKNSPSQDQFIILTNPSEPSALEIA 188 (225)
T ss_pred HHHHHHHHHHcCcchhHHHHHHHHcCccccchhhHHHHHHHHHHHHHHHHcCCccccchhchhhcccccchhhhhHHHHH
Confidence 4556777899999999999999999999999988888888888887776554210 11122345566677776
Q ss_pred HH
Q 030907 78 VD 79 (169)
Q Consensus 78 Ae 79 (169)
|+
T Consensus 189 a~ 190 (225)
T PF12335_consen 189 AE 190 (225)
T ss_pred HH
Confidence 64
No 136
>PRK00404 tatB sec-independent translocase; Provisional
Probab=50.24 E-value=1.2e+02 Score=24.13 Aligned_cols=16 Identities=13% Similarity=0.264 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 030907 81 IGEIFIFTVAGAAVIF 96 (169)
Q Consensus 81 lgE~fIF~Va~~li~~ 96 (169)
++|++|.+|.+.+++.
T Consensus 6 ~~ELlvI~VVaLlV~G 21 (141)
T PRK00404 6 FSELLLVGLVALLVLG 21 (141)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 4688888887777754
No 137
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=50.18 E-value=21 Score=20.02 Aligned_cols=12 Identities=42% Similarity=0.675 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 030907 132 LLRQKIEELEQL 143 (169)
Q Consensus 132 ~l~~~i~ele~~ 143 (169)
.++.+|..||+.
T Consensus 5 rlr~rI~dLer~ 16 (23)
T PF04508_consen 5 RLRNRISDLERQ 16 (23)
T ss_pred HHHHHHHHHHHH
Confidence 333444444433
No 138
>PF14163 SieB: Superinfection exclusion protein B
Probab=49.93 E-value=95 Score=23.88 Aligned_cols=28 Identities=32% Similarity=0.275 Sum_probs=21.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 67 PLNEEKAVQAAVDLIGEIFIFTVAGAAV 94 (169)
Q Consensus 67 pL~Ee~Ave~GAe~lgE~fIF~Va~~li 94 (169)
-|+-++.......++|=+|+|+++-.+.
T Consensus 22 ~l~l~~~~~~y~~~i~~~fl~s~s~li~ 49 (151)
T PF14163_consen 22 WLNLDKFEIKYQPWIGLIFLFSVSYLIA 49 (151)
T ss_pred HhCcchHHHhcchHHHHHHHHHHHHHHH
Confidence 3667777788889999888887765444
No 139
>PRK11239 hypothetical protein; Provisional
Probab=49.56 E-value=32 Score=29.12 Aligned_cols=30 Identities=27% Similarity=0.269 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 115 ELEALRQRDEGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 115 ~le~L~~~~~~l~~eve~l~~~i~ele~~~ 144 (169)
+.++|+.++..|+.++..|++++++|...+
T Consensus 184 ~~~~Le~rv~~Le~eva~L~~~l~~l~~~~ 213 (215)
T PRK11239 184 VDGDLQARVEALEIEVAELKQRLDSLLAHL 213 (215)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345688888888888888888888887643
No 140
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=49.49 E-value=87 Score=23.14 Aligned_cols=35 Identities=31% Similarity=0.382 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 111 IRKQELEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 111 ~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
....+++.++..++.+...+..++.++.++.+.+.
T Consensus 90 ~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~ 124 (126)
T TIGR00293 90 FLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQ 124 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556667778888888888888888888877764
No 141
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=49.33 E-value=1.3e+02 Score=23.72 Aligned_cols=26 Identities=8% Similarity=-0.130 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 030907 79 DLIGEIFIFTVAGAAVIFEVQRSARS 104 (169)
Q Consensus 79 e~lgE~fIF~Va~~li~~E~~Rs~~k 104 (169)
+++.-++.|.|..+++.+-.|+--.+
T Consensus 18 ~~~~~~i~Flil~~iL~~~~~kpi~~ 43 (173)
T PRK13460 18 LVVWTLVTFLVVVLVLKKFAWDVILK 43 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 67888888999999988888776555
No 142
>PF09457 RBD-FIP: FIP domain ; InterPro: IPR019018 The Rab11 GTPase regulates recycling of internalized plasma membrane receptors and is essential for completion of cytokinesis. A family of Rab11 interacting proteins (FIPs) that conserve a C-terminal Rab-binding domain (RBD) selectively recognise the active form of Rab11. FIPs are diverse in sequence length and composition toward their N-termini, presumably a feature that underpins their specific roles in Rab11-mediated vesicle trafficking. They have been divided into three subfamilies (classe I, II, and III)on the basis of domain architecture. Class I FIPs comprises a subfamily of three proteins (Rip11/pp75/FIP5, Rab-coupling protein (RCP), and FIP2) that possess an N- terminal C2 domain, localize to recycling endosomes, and regulate plasma membrane recycling. The class II subfamily consists of two proteins (FIP3/eferin/arfophilin and FIP4) with tandem EF hands and a proline-rich region. Class II FIPs localize to recycling endosomes, the trans-Golgi network, and have been implicated in the regulation of membrane trafficking during cytokinesis. The class III subfamily consists of a single protein, FIP1, which does not contain obvious homology domains or motifs other than the FIP-RBD [, , , ]. The FIP-RBD domain is also found in Rab6-interacting protein Erc1/Elks. Erc1 is the regulatory subunit of the IKK complex and probably recruits IkappaBalpha/NFKBIA to the complex []. It may be involved in the organisation of the cytomatrix at the nerve terminals active zone (CAZ) which regulates neurotransmitter release. It may also be involved in vesicle trafficking at the CAZ, as well as in Rab-6 regulated endosomes to Golgi transport []. The FIB-RBD domain consists of an N-terminal long alpha-helix, followed by a 90 degrees bend at a conserved proline residue, a 3(10) helix and a C-terminal short beta-strand, adopting an "L" shape. The long alpha-helix forms a parallel coiled-coil homodimer that symmetrically interacts with two Rab11 molecules on both sides, forming a quaternary Rab11-(FIP)2-Rab11 complex. The Rab11-interacting region of FIP-RBD is confined to the C-terminal 24 amino acids, which cover the C-terminal half of the long alpha-helix and the short beta-strand [, , , ]. This entry represents the FIP-RBD domain.; PDB: 2HV8_E 2D7C_D 2K6S_B 2GZD_D 2GZH_B.
Probab=48.99 E-value=60 Score=21.15 Aligned_cols=30 Identities=20% Similarity=0.147 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 117 EALRQRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 117 e~L~~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
++|...+..++.++...+.++++|+.+.-+
T Consensus 3 eeL~~~l~~~e~~~~~k~~~v~eLe~YiD~ 32 (48)
T PF09457_consen 3 EELISLLKKQEEENARKDSRVRELEDYIDN 32 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666677777888888888888887754
No 143
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=48.59 E-value=83 Score=22.59 Aligned_cols=33 Identities=36% Similarity=0.367 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 113 KQELEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 113 ~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
++.|+.|-.+++....+.+.|+..-+-|..+..
T Consensus 29 Q~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~ 61 (80)
T PF10224_consen 29 QDSLEALSDRVEEVKEENEKLESENEYLQQYIG 61 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444443
No 144
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=48.54 E-value=26 Score=25.06 Aligned_cols=24 Identities=13% Similarity=0.144 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHH
Q 030907 86 IFTVAGAAVIFEVQRSARSEARKE 109 (169)
Q Consensus 86 IF~Va~~li~~E~~Rs~~ke~~Ke 109 (169)
.|.+..++.++=.+|..+|..++.
T Consensus 8 ~~vv~~~i~yf~~~rpqkK~~k~~ 31 (84)
T TIGR00739 8 PLVLIFLIFYFLIIRPQRKRRKAH 31 (84)
T ss_pred HHHHHHHHHHHheechHHHHHHHH
Confidence 344445555556667666554443
No 145
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=48.40 E-value=1.1e+02 Score=28.84 Aligned_cols=46 Identities=24% Similarity=0.448 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Q 030907 108 KEEIRKQELEALRQRDEGLARELELLRQKIEELEQLAKQRGLSGIF 153 (169)
Q Consensus 108 Kee~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~~~~~~~~ 153 (169)
......+.+..|+..-.+-...+..++..+.++.+.+....|||+.
T Consensus 394 ~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp 439 (560)
T PF06160_consen 394 EQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNLPGLP 439 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 3345566777888888888889999999999999999999999994
No 146
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=48.09 E-value=1.5e+02 Score=26.00 Aligned_cols=36 Identities=19% Similarity=0.322 Sum_probs=24.4
Q ss_pred ccHHHHHHHHHHHhhhHHHHHHHH--------HHhhChhhhHhh
Q 030907 3 LPVVKLGTLALKTLSKPVAAKLKQ--------QAAIHPRFRQSI 38 (169)
Q Consensus 3 fPl~KL~~L~iR~iSKPian~iK~--------~A~~~p~fR~~~ 38 (169)
+|++-+-....|.+.+-|...=.. ...+-|.||.|.
T Consensus 67 ~P~Lely~~~c~EL~~~I~egr~~~~~~E~~~~~~nPpLf~EY~ 110 (325)
T PF08317_consen 67 VPMLELYQFSCRELKKYISEGRQIFEEIEEETYESNPPLFREYY 110 (325)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHH
Confidence 588888888888888888754111 122456678885
No 147
>PRK11677 hypothetical protein; Provisional
Probab=48.08 E-value=1.3e+02 Score=23.49 Aligned_cols=14 Identities=14% Similarity=0.228 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q 030907 85 FIFTVAGAAVIFEV 98 (169)
Q Consensus 85 fIF~Va~~li~~E~ 98 (169)
||-|+++|+++.=+
T Consensus 10 livG~iiG~~~~R~ 23 (134)
T PRK11677 10 LVVGIIIGAVAMRF 23 (134)
T ss_pred HHHHHHHHHHHHhh
Confidence 34444444444443
No 148
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=47.65 E-value=1.2e+02 Score=26.72 Aligned_cols=36 Identities=19% Similarity=0.348 Sum_probs=23.5
Q ss_pred ccHHHHHHHHHHHhhhHHHHHH------HH-HH-hhChhhhHhh
Q 030907 3 LPVVKLGTLALKTLSKPVAAKL------KQ-QA-AIHPRFRQSI 38 (169)
Q Consensus 3 fPl~KL~~L~iR~iSKPian~i------K~-~A-~~~p~fR~~~ 38 (169)
+|+.-|-....|-+.+-|..-= -. -. .+=|.||.|.
T Consensus 62 iP~LElY~~sC~EL~~~I~egr~~~~~~E~et~~~nPpLF~EY~ 105 (312)
T smart00787 62 VPLLELYQFSCKELKKYISEGRDLFKEIEEETLINNPPLFKEYF 105 (312)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHH
Confidence 6888888888888888776531 11 11 2345778887
No 149
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=47.07 E-value=1.5e+02 Score=25.92 Aligned_cols=33 Identities=24% Similarity=0.396 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 113 KQELEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 113 ~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
..+++.+..++.+.+.++.+.+.++.++...|.
T Consensus 206 ~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~ 238 (269)
T PF05278_consen 206 KEELEELEEELKQKEKEVKEIKERITEMKGRLG 238 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666666666666666655553
No 150
>PRK10884 SH3 domain-containing protein; Provisional
Probab=46.95 E-value=1.3e+02 Score=25.00 Aligned_cols=31 Identities=13% Similarity=0.312 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 114 QELEALRQRDEGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 114 ~~le~L~~~~~~l~~eve~l~~~i~ele~~~ 144 (169)
+...+|+++..+|..+++.++.+++.++..+
T Consensus 132 ~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~ 162 (206)
T PRK10884 132 SVINGLKEENQKLKNQLIVAQKKVDAANLQL 162 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555544443
No 151
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=46.87 E-value=56 Score=26.74 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 030907 124 EGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 124 ~~l~~eve~l~~~i~ele~~~~~ 146 (169)
.+|+.++.++..+|+.||.....
T Consensus 123 ~eL~~eI~~L~~~i~~le~~~~~ 145 (171)
T PF04799_consen 123 NELEDEIKQLEKEIQRLEEIQSK 145 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888899999888887753
No 152
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=46.61 E-value=17 Score=34.23 Aligned_cols=30 Identities=23% Similarity=0.490 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 115 ELEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 115 ~le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
+.+.++ ++++|++++++|++++.++.+.+.
T Consensus 26 ~~~~~q-kie~L~kql~~Lk~q~~~l~~~v~ 55 (489)
T PF11853_consen 26 DIDLLQ-KIEALKKQLEELKAQQDDLNDRVD 55 (489)
T ss_pred hhHHHH-HHHHHHHHHHHHHHhhcccccccc
Confidence 334444 788888888888888777666553
No 153
>PF12097 DUF3573: Protein of unknown function (DUF3573); InterPro: IPR021956 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 372 to 530 amino acids in length.
Probab=46.58 E-value=59 Score=29.68 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 120 RQRDEGLARELELLRQKIEELEQL 143 (169)
Q Consensus 120 ~~~~~~l~~eve~l~~~i~ele~~ 143 (169)
++.+.+|++++..|+.+|..|++.
T Consensus 41 ~~~i~~Lq~QI~~Lq~ei~~l~~~ 64 (383)
T PF12097_consen 41 QQEISELQKQIQQLQAEINQLEEQ 64 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667777777777777777776
No 154
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=46.54 E-value=59 Score=23.81 Aligned_cols=28 Identities=25% Similarity=0.524 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 112 RKQELEALRQRDEGLARELELLRQKIEE 139 (169)
Q Consensus 112 ~~~~le~L~~~~~~l~~eve~l~~~i~e 139 (169)
-..++++|+.+++.+.++++.|+.+++-
T Consensus 47 wek~v~~L~~e~~~l~~E~e~L~~~l~~ 74 (87)
T PF12709_consen 47 WEKKVDELENENKALKRENEQLKKKLDT 74 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777777777777777776653
No 155
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=46.46 E-value=1.4e+02 Score=23.19 Aligned_cols=29 Identities=3% Similarity=0.278 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030907 119 LRQRDEGLARELELLRQKIEELEQLAKQR 147 (169)
Q Consensus 119 L~~~~~~l~~eve~l~~~i~ele~~~~~~ 147 (169)
+++++.++..+++....+++.+++++.+.
T Consensus 87 i~~eV~~v~~dv~~i~~dv~~v~~~V~~L 115 (126)
T PF07889_consen 87 IKDEVTEVREDVSQIGDDVDSVQQMVEGL 115 (126)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666666665543
No 156
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=46.38 E-value=1.1e+02 Score=22.71 Aligned_cols=36 Identities=28% Similarity=0.431 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 111 IRKQELEALRQRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 111 ~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
-...+++.|++.+++++.++..++++++.++..+..
T Consensus 91 ~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~ 126 (129)
T cd00584 91 FLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQE 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677778888888888888888887776653
No 157
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=46.01 E-value=1.2e+02 Score=22.38 Aligned_cols=24 Identities=25% Similarity=0.167 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHH
Q 030907 87 FTVAGAAVIFEVQRSARSEARKEE 110 (169)
Q Consensus 87 F~Va~~li~~E~~Rs~~ke~~Kee 110 (169)
-++++++..+-.+.-+++-+++++
T Consensus 13 ~a~~~~~~~~~~~~l~~~~a~~~~ 36 (106)
T PF10805_consen 13 WAVFGIAGGIFWLWLRRTYAKRED 36 (106)
T ss_pred HHHHHHHHHHHHHHHHHhhccHHH
Confidence 344444445555555555444443
No 158
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=45.96 E-value=1.2e+02 Score=26.80 Aligned_cols=28 Identities=32% Similarity=0.205 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 116 LEALRQRDEGLARELELLRQKIEELEQL 143 (169)
Q Consensus 116 le~L~~~~~~l~~eve~l~~~i~ele~~ 143 (169)
...|++....+...-+.|+..|++||++
T Consensus 93 ~s~Leddlsqt~aikeql~kyiReLEQa 120 (333)
T KOG1853|consen 93 ESQLEDDLSQTHAIKEQLRKYIRELEQA 120 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345555544444455555566666553
No 159
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=45.77 E-value=3.1e+02 Score=27.08 Aligned_cols=64 Identities=20% Similarity=0.305 Sum_probs=30.4
Q ss_pred HHHHHHHHH-HH----HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 77 AVDLIGEIF-IF----TVAGAAVIFEVQRSARSEARKEEIRKQELEALRQRDEGLARELELLRQKIEEL 140 (169)
Q Consensus 77 GAe~lgE~f-IF----~Va~~li~~E~~Rs~~ke~~Kee~~~~~le~L~~~~~~l~~eve~l~~~i~el 140 (169)
+-++|++++ +| ..=....-.|+.+..+--...-+.|.+++.+++++++.+...-+.+..|++++
T Consensus 537 ~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a 605 (717)
T PF10168_consen 537 CLELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEA 605 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666664 22 22223334444444333333334555566666666555555544444444443
No 160
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=45.62 E-value=68 Score=22.96 Aligned_cols=30 Identities=37% Similarity=0.488 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 115 ELEALRQRDEGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 115 ~le~L~~~~~~l~~eve~l~~~i~ele~~~ 144 (169)
++.+|+++++.++.++..++.+++.++..+
T Consensus 71 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 100 (104)
T PF13600_consen 71 ELKELEEELEALEDELAALQDEIQALEAQI 100 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666555443
No 161
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=45.59 E-value=1.2e+02 Score=26.45 Aligned_cols=31 Identities=32% Similarity=0.401 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 115 ELEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 115 ~le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
++++++.+.++.+..++.++-....|++.++
T Consensus 157 eleele~e~ee~~erlk~le~E~s~LeE~~~ 187 (290)
T COG4026 157 ELEELEAEYEEVQERLKRLEVENSRLEEMLK 187 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333444443
No 162
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.45 E-value=1.5e+02 Score=23.44 Aligned_cols=54 Identities=17% Similarity=0.186 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 84 IFIFTVAGAAVIFEVQRSARSEARKEEIRKQELEALRQRDEGLARELELLRQKIEEL 140 (169)
Q Consensus 84 ~fIF~Va~~li~~E~~Rs~~ke~~Kee~~~~~le~L~~~~~~l~~eve~l~~~i~el 140 (169)
.+|-||+.|.++.-....+ .+.....+.+++.++.+.++...|++..=++-.||
T Consensus 14 gLvvGi~IG~li~Rlt~~~---~k~q~~~q~ELe~~K~~ld~~rqel~~HFa~sAeL 67 (138)
T COG3105 14 GLVVGIIIGALIARLTNRK---LKQQQKLQYELEKVKAQLDEYRQELVKHFARSAEL 67 (138)
T ss_pred HHHHHHHHHHHHHHHcchh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666655443332 33334455667777777777766666554444433
No 163
>PF14774 FAM177: FAM177 family
Probab=45.36 E-value=22 Score=27.46 Aligned_cols=33 Identities=24% Similarity=0.359 Sum_probs=22.4
Q ss_pred HHHHHHHHHHH--HHHHHH---HHHHHHHHhhhhHHHH
Q 030907 76 AAVDLIGEIFI--FTVAGA---AVIFEVQRSARSEARK 108 (169)
Q Consensus 76 ~GAe~lgE~fI--F~Va~~---li~~E~~Rs~~ke~~K 108 (169)
.|+|+|||.|- ||+... ..+=||+|....+..+
T Consensus 79 ~~~d~~Ge~lA~~fGit~~KYqy~idey~r~~~~~~~~ 116 (123)
T PF14774_consen 79 SGCDYLGEKLASFFGITSPKYQYAIDEYYRMQEEEKEE 116 (123)
T ss_pred hHHhhhhhHHHHHhCCCchHHHHHHHHHHHHHHHHHhH
Confidence 68999999994 666543 4566777766554433
No 164
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.31 E-value=96 Score=27.06 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 030907 124 EGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 124 ~~l~~eve~l~~~i~ele~~~ 144 (169)
..++.++..++.+|.+-+..+
T Consensus 83 k~l~~eI~~~~~~I~~r~~~l 103 (265)
T COG3883 83 KKLQKEIAELKENIVERQELL 103 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444443
No 165
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=44.76 E-value=1.6e+02 Score=25.67 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 030907 119 LRQRDEGLARELELLRQKIEEL 140 (169)
Q Consensus 119 L~~~~~~l~~eve~l~~~i~el 140 (169)
|.++.++++.+++..+.++++|
T Consensus 154 L~~eleele~e~ee~~erlk~l 175 (290)
T COG4026 154 LLKELEELEAEYEEVQERLKRL 175 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 166
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=44.67 E-value=86 Score=20.40 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 117 EALRQRDEGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 117 e~L~~~~~~l~~eve~l~~~i~ele~~~ 144 (169)
++|+++++.|+.++..|+.....-..+.
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~~fs~yKKa~ 29 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQAAFSQYKKAE 29 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777766666666665554444
No 167
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=44.57 E-value=1.2e+02 Score=22.91 Aligned_cols=45 Identities=27% Similarity=0.322 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 030907 108 KEEIRKQELEALRQRDEGLARELELLRQKIEELEQLAKQRGLSGI 152 (169)
Q Consensus 108 Kee~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~~~~~~~ 152 (169)
+|+....++.......+..+..++.+....++..+.+...|..|+
T Consensus 17 ~ee~a~~~la~a~~~~~~~~~~L~~L~~y~~~y~~~~~~~~~~g~ 61 (147)
T PRK05689 17 AEEQAALQLGQARQELQQAEQQLKMLEDYRLEYRQQLNDRGSAGM 61 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 445556667777777778888888888778887777766555555
No 168
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.39 E-value=1.2e+02 Score=29.59 Aligned_cols=53 Identities=23% Similarity=0.275 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 87 FTVAGAAVIFEVQRSARSEARKEEIRKQELEALRQRDEGLARELELLRQKIEE 139 (169)
Q Consensus 87 F~Va~~li~~E~~Rs~~ke~~Kee~~~~~le~L~~~~~~l~~eve~l~~~i~e 139 (169)
|.-=.-++=+|+.|....=..+.+.+.|++.+++++++.+...-+.+..|+++
T Consensus 575 Yi~~~dlV~~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~ee 627 (741)
T KOG4460|consen 575 YILKQDLVKEEIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEE 627 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677889999999888777888888887777766555555555555444
No 169
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=44.28 E-value=1.7e+02 Score=24.72 Aligned_cols=33 Identities=42% Similarity=0.547 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 113 KQELEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 113 ~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
..++..++.++..|..+++.++.+...|+..+.
T Consensus 215 ~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~ 247 (312)
T PF00038_consen 215 KEELKELRRQIQSLQAELESLRAKNASLERQLR 247 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHhhhhHhhhhhhccccchhhhhhhHH
Confidence 444555666666666666666666666655553
No 170
>TIGR01711 gspJ general secretion pathway protein J. Both GspI and GspJ are proteins of the type II secretion pathway, or main terminal branch of the general secretion pathway. This pathway carries proteins across the outer membrane. Note that proteins of type II secretion are cryptic in E. coli K-12 - present but not yet demonstrated to act on any target.
Probab=44.00 E-value=1.7e+02 Score=23.60 Aligned_cols=53 Identities=19% Similarity=0.331 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 79 DLIGEIFIFTVAGAAVIFEVQRSARSEARKEEIRKQELEALRQRDEGLARELEL 132 (169)
Q Consensus 79 e~lgE~fIF~Va~~li~~E~~Rs~~ke~~Kee~~~~~le~L~~~~~~l~~eve~ 132 (169)
|++.=++||++.++++ +-...+..+....-+.+.+++.+++.-...+++++..
T Consensus 7 Ellval~I~ail~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~l~~Dl~~ 59 (192)
T TIGR01711 7 ELLVAIAIFASLSLGA-YQVLDSVMQSDEATRVQEARLRELQRAMGAMERDLTQ 59 (192)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666665544 3333343333333333344555555555555554444
No 171
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=43.92 E-value=81 Score=22.86 Aligned_cols=33 Identities=36% Similarity=0.527 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 113 KQELEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 113 ~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
..+++.++..++.+..++..++.++..++..+.
T Consensus 83 ~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~ 115 (120)
T PF02996_consen 83 KKRIKELEEQLEKLEKELAELQAQIEQLEQTLQ 115 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666666666666655554
No 172
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=43.86 E-value=1.8e+02 Score=23.70 Aligned_cols=7 Identities=0% Similarity=-0.088 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 030907 88 TVAGAAV 94 (169)
Q Consensus 88 ~Va~~li 94 (169)
|+++|++
T Consensus 13 G~~~G~~ 19 (201)
T PF12072_consen 13 GIGIGYL 19 (201)
T ss_pred HHHHHHH
Confidence 3333333
No 173
>PRK10722 hypothetical protein; Provisional
Probab=43.75 E-value=1.4e+02 Score=25.93 Aligned_cols=55 Identities=29% Similarity=0.491 Sum_probs=36.9
Q ss_pred HHHHHHHHhhhh------HH-HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhc
Q 030907 93 AVIFEVQRSARS------EA-RKEEIR----KQELEALRQRDEGLARELELLRQKIEE---LEQLAKQR 147 (169)
Q Consensus 93 li~~E~~Rs~~k------e~-~Kee~~----~~~le~L~~~~~~l~~eve~l~~~i~e---le~~~~~~ 147 (169)
-.++..||...- ++ .+=... +.+++.++++..+|+.+++....+|+. +|+.|.++
T Consensus 144 rPL~qlwr~~Q~l~l~LaeEr~Ry~rLQq~sD~qlD~lrqq~~~Lq~~L~~t~rKLEnLTdIERqLSsR 212 (247)
T PRK10722 144 RPLYQLWRDGQALQLALAEERQRYQKLQQSSDSELDALRQQQQRLQYQLELTTRKLENLTDIERQLSSR 212 (247)
T ss_pred hHHHHHHHHhhHHHHhHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 357888888744 22 211122 567778888888888888888888775 46667554
No 174
>PRK02201 putative inner membrane protein translocase component YidC; Provisional
Probab=43.73 E-value=1.8e+02 Score=26.29 Aligned_cols=73 Identities=12% Similarity=0.171 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 030907 76 AAVDLIGEIFIFTVAGAAVIFEVQRSARSEARKEEIRKQELEALRQRDEGLARELELLRQKIEELEQLAKQRG 148 (169)
Q Consensus 76 ~GAe~lgE~fIF~Va~~li~~E~~Rs~~ke~~Kee~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~~~ 148 (169)
.|-....=+++++|..=++++=....+.+..+|-.+.+-++++++++..+-+.+-+..+..-.|+.++.+..|
T Consensus 129 ~G~~w~laII~~TiivRlillPl~~k~~~s~~km~~lqPel~~Iq~Kyk~~~~d~~~~~k~q~e~~~Lykk~g 201 (357)
T PRK02201 129 YGWSTILAIIVVVLIIRLISFLITFKSTFNQEKQEELQGKKAKIDAKYKDYKKDKQMKQRKQQEIQELYKKHN 201 (357)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHcC
Confidence 4555555566777777777777777777777777777888888888765432222223333344444444433
No 175
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=43.43 E-value=60 Score=20.52 Aligned_cols=32 Identities=19% Similarity=0.318 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 030907 73 AVQAAVDLIGEIFIFTVAGAAVIFEVQRSARS 104 (169)
Q Consensus 73 Ave~GAe~lgE~fIF~Va~~li~~E~~Rs~~k 104 (169)
++..-+..++=+++|.+-.|+++|-|++++++
T Consensus 5 ~~~~~~~~~~~v~~~~~F~gi~~w~~~~~~k~ 36 (49)
T PF05545_consen 5 TLQGFARSIGTVLFFVFFIGIVIWAYRPRNKK 36 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccchh
Confidence 34445666777777888889999988776643
No 176
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=43.33 E-value=1.6e+02 Score=28.34 Aligned_cols=56 Identities=23% Similarity=0.399 Sum_probs=43.1
Q ss_pred HHHHhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 030907 97 EVQRSARSEA-RKEEIRKQELEALRQRDEGLARELELLRQKIEELEQLAKQRGLSGI 152 (169)
Q Consensus 97 E~~Rs~~ke~-~Kee~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~~~~~~~ 152 (169)
+++..+-.+- .+.+..++.|.+|++.--+-...++.++.++.++.+.+....+||+
T Consensus 385 ~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR~mek~nLPGl 441 (570)
T COG4477 385 EEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIKRYMEKSNLPGL 441 (570)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 4444444433 4445667788888888777788899999999999999999889998
No 177
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.80 E-value=70 Score=22.82 Aligned_cols=12 Identities=50% Similarity=0.606 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 030907 123 DEGLARELELLR 134 (169)
Q Consensus 123 ~~~l~~eve~l~ 134 (169)
.+.|+++.+.++
T Consensus 48 reaL~~eneqlk 59 (79)
T COG3074 48 REALERENEQLK 59 (79)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 178
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=42.75 E-value=1.1e+02 Score=29.81 Aligned_cols=23 Identities=43% Similarity=0.573 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 030907 122 RDEGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 122 ~~~~l~~eve~l~~~i~ele~~~ 144 (169)
+++.|+.+++..+.++++|++.+
T Consensus 482 ~I~~L~~~L~e~~~~ve~L~~~l 504 (652)
T COG2433 482 RIERLEKELEEKKKRVEELERKL 504 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443
No 179
>PRK10884 SH3 domain-containing protein; Provisional
Probab=42.68 E-value=1.1e+02 Score=25.41 Aligned_cols=34 Identities=9% Similarity=0.110 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 111 IRKQELEALRQRDEGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 111 ~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~ 144 (169)
..+++.++|++++..++.+++.++++++.+++-.
T Consensus 136 ~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 136 GLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666777777777777777777777776544
No 180
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=42.63 E-value=1e+02 Score=24.42 Aligned_cols=19 Identities=32% Similarity=0.566 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 030907 126 LARELELLRQKIEELEQLA 144 (169)
Q Consensus 126 l~~eve~l~~~i~ele~~~ 144 (169)
+++++.+++.+++++.+..
T Consensus 71 l~Rk~~kl~~el~~~~~~~ 89 (161)
T PF04420_consen 71 LNRKLDKLEEELEKLNKSL 89 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 181
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=42.51 E-value=1.4e+02 Score=28.61 Aligned_cols=33 Identities=33% Similarity=0.359 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 030907 117 EALRQRDEGLARELELLRQKIEELEQLAKQRGL 149 (169)
Q Consensus 117 e~L~~~~~~l~~eve~l~~~i~ele~~~~~~~~ 149 (169)
+++..++..++.+++.++.+++++++.++..|+
T Consensus 226 e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG 258 (650)
T TIGR03185 226 EDLAQEIAHLRNELEEAQRSLESLEKKFRSEGG 258 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334444555556666666666666776666664
No 182
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=42.44 E-value=76 Score=27.89 Aligned_cols=31 Identities=32% Similarity=0.504 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 116 LEALRQRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 116 le~L~~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
+.+|+++...|+.+++.|..|-+.+++-+++
T Consensus 6 L~eL~qrk~~Lq~eIe~LerR~~ri~~Emrt 36 (283)
T PF11285_consen 6 LKELEQRKQALQIEIEQLERRRERIEKEMRT 36 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4445555555555555555555555555543
No 183
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=42.34 E-value=63 Score=23.34 Aligned_cols=17 Identities=29% Similarity=0.692 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 030907 113 KQELEALRQRDEGLARE 129 (169)
Q Consensus 113 ~~~le~L~~~~~~l~~e 129 (169)
+.++++|+.+-..|..+
T Consensus 24 qmEieELKekn~~L~~e 40 (79)
T PRK15422 24 QMEIEELKEKNNSLSQE 40 (79)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555554444443
No 184
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=42.08 E-value=1.1e+02 Score=30.21 Aligned_cols=30 Identities=20% Similarity=0.271 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 108 KEEIRKQELEALRQRDEGLARELELLRQKI 137 (169)
Q Consensus 108 Kee~~~~~le~L~~~~~~l~~eve~l~~~i 137 (169)
|+.+.+.+++++..++|++.+.+..-+.++
T Consensus 101 krqel~seI~~~n~kiEelk~~i~~~q~eL 130 (907)
T KOG2264|consen 101 KRQELNSEIEEINTKIEELKRLIPQKQLEL 130 (907)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhHHHH
Confidence 334445555555555555555444444333
No 185
>KOG2094 consensus Predicted DNA damage inducible protein [Replication, recombination and repair]
Probab=41.60 E-value=1e+02 Score=28.70 Aligned_cols=35 Identities=23% Similarity=0.434 Sum_probs=26.0
Q ss_pred HHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 93 AVIFEVQRSA---RSEARKEEIRKQELEALRQRDEGLA 127 (169)
Q Consensus 93 li~~E~~Rs~---~ke~~Kee~~~~~le~L~~~~~~l~ 127 (169)
=|+||..+.+ ..+.+||...+++++.++.++..+.
T Consensus 40 kiI~E~skgSkff~~e~kke~~~~qrIe~m~~r~~k~t 77 (490)
T KOG2094|consen 40 KIIYEASKGSKFFENEQKKERELRQRIEKMQVRVAKYT 77 (490)
T ss_pred HHHHHhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3578877776 4577888888888888888776554
No 186
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=41.56 E-value=1.1e+02 Score=22.69 Aligned_cols=32 Identities=34% Similarity=0.389 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 113 KQELEALRQRDEGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 113 ~~~le~L~~~~~~l~~eve~l~~~i~ele~~~ 144 (169)
.++++.++.+++.+...+.+...-++.++.+-
T Consensus 12 ~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~ 43 (129)
T cd00584 12 QQEIEELQQELARLNEAIAEYEQAKETLETLK 43 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555555555555555555555444
No 187
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=41.22 E-value=1.6e+02 Score=22.45 Aligned_cols=7 Identities=57% Similarity=0.634 Sum_probs=3.3
Q ss_pred CCHHHHH
Q 030907 68 LNEEKAV 74 (169)
Q Consensus 68 L~Ee~Av 74 (169)
||-+.|=
T Consensus 39 ln~eEak 45 (108)
T COG3937 39 LNAEEAK 45 (108)
T ss_pred CCHHHHH
Confidence 5554443
No 188
>PRK09039 hypothetical protein; Validated
Probab=41.05 E-value=1.7e+02 Score=25.98 Aligned_cols=23 Identities=17% Similarity=0.143 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 030907 119 LRQRDEGLARELELLRQKIEELE 141 (169)
Q Consensus 119 L~~~~~~l~~eve~l~~~i~ele 141 (169)
|+..++..+.+..+.+.+|++++
T Consensus 156 le~~L~~ae~~~~~~~~~i~~L~ 178 (343)
T PRK09039 156 LEAALDASEKRDRESQAKIADLG 178 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444333
No 189
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=40.94 E-value=1.8e+02 Score=23.10 Aligned_cols=29 Identities=31% Similarity=0.424 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 117 EALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 117 e~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
+.+.++++++..+++..+..++.|.....
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~LkkQ~~ 185 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALKKQSE 185 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666655544
No 190
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=40.91 E-value=1.5e+02 Score=21.90 Aligned_cols=44 Identities=34% Similarity=0.290 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 030907 108 KEEIRKQELEALRQRDEGLARELELLRQKIEELEQLAKQRGLSG 151 (169)
Q Consensus 108 Kee~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~~~~~~ 151 (169)
+++....++.......+..+..++.+.....+..+.+...+..|
T Consensus 14 ~ed~a~~~la~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g 57 (141)
T TIGR02473 14 EEEQAKLELAKAQAEFERLETQLQQLIKYREEYEQQALEKVGAG 57 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34455566666777777777777777777777777665544444
No 191
>PF02096 60KD_IMP: 60Kd inner membrane protein; InterPro: IPR001708 This family of proteins is required for the insertion of integral membrane proteins into cellular membranes. Many of these integral membrane proteins are associated with respiratory chain complexes, for example a large number of members of this family play an essential role in the activity and assembly of cytochrome c oxidase. Stage III sporulation protein J (SP3J) is a probable lipoprotein, rich in basic and hydrophobic amino acids. Mutations in the protein abolish the transcription of prespore-specific genes transcribed by the sigma G form of RNA polymerase []. SP3J could be involved in a signal transduction pathway coupling gene expression in the prespore to events in the mother cell, or it may be necessary for essential metabolic interactions between the two cells []. The protein shows a high degree of similarity to Bacillus subtilis YQJG, to yeast OXA1 and also to bacterial 60 kDa inner-membrane proteins [, , , ]. ; GO: 0051205 protein insertion into membrane, 0016021 integral to membrane
Probab=40.82 E-value=1.8e+02 Score=23.01 Aligned_cols=60 Identities=15% Similarity=0.274 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 030907 84 IFIFTVAGAAVIFEVQRSARSEARKEEIRKQELEALRQRDEGLARELELLRQKIEELEQLAKQRGL 149 (169)
Q Consensus 84 ~fIF~Va~~li~~E~~Rs~~ke~~Kee~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~~~~ 149 (169)
+++++++.=++++=..-.+.+..+|..+.+-++++++++..+ +.+..-+|+.+..+..|.
T Consensus 7 Iil~ti~vR~~~~Pl~i~~~~~~~k~~~~~P~l~~i~~k~~~------~~~~~~~~~~~l~k~~~~ 66 (198)
T PF02096_consen 7 IILTTILVRLILLPLSIKQQRSSAKMQELQPELKEIQEKYKE------DQQKMQQEMQKLYKKHGV 66 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH------HHHHHHHHHHHHHHHcCC
Confidence 345566555555555555555556666667777777777621 222333445555555554
No 192
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=40.81 E-value=1.2e+02 Score=22.88 Aligned_cols=32 Identities=28% Similarity=0.329 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 114 QELEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 114 ~~le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
.+++.|+..++.+..++..++.+++++.+.+.
T Consensus 101 ~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~ 132 (140)
T PRK03947 101 KRKEELEKALEKLEEALQKLASRIAQLAQELQ 132 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555543
No 193
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=40.78 E-value=1.5e+02 Score=22.57 Aligned_cols=45 Identities=31% Similarity=0.301 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 030907 108 KEEIRKQELEALRQRDEGLARELELLRQKIEELEQLAKQRGLSGI 152 (169)
Q Consensus 108 Kee~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~~~~~~~ 152 (169)
+++....++.......++.+..++.+.....+..+.+...+..|+
T Consensus 17 ~ee~a~~~L~~a~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~g~ 61 (146)
T PRK07720 17 EKEKALGEYEEAVSRFEQVAEKLYELLKQKEDLEQAKEEKLQSGL 61 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 344455667777777788888888888888888888876554554
No 194
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=40.62 E-value=98 Score=23.20 Aligned_cols=31 Identities=32% Similarity=0.356 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 114 QELEALRQRDEGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 114 ~~le~L~~~~~~l~~eve~l~~~i~ele~~~ 144 (169)
+++.+|+..+.++..|...|+-+.+.|.+.+
T Consensus 22 ~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l 52 (107)
T PF06156_consen 22 EELEELKKQLQELLEENARLRIENEHLRERL 52 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455544444444444433333333333
No 195
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=40.56 E-value=36 Score=27.64 Aligned_cols=24 Identities=38% Similarity=0.487 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 114 QELEALRQRDEGLARELELLRQKI 137 (169)
Q Consensus 114 ~~le~L~~~~~~l~~eve~l~~~i 137 (169)
+|.|.|+..+..|.+|+.+|++++
T Consensus 24 dEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 24 DEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666677777777666
No 196
>PF15456 Uds1: Up-regulated During Septation
Probab=40.53 E-value=96 Score=23.85 Aligned_cols=33 Identities=30% Similarity=0.351 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 113 KQELEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 113 ~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
.+++.+...+++++..++..+..+..++.+.+-
T Consensus 80 eeel~~~~rk~ee~~~eL~~le~R~~~~~~rLL 112 (124)
T PF15456_consen 80 EEELAESDRKCEELAQELWKLENRLAEVRQRLL 112 (124)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778889999999999999999999887763
No 197
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=40.22 E-value=53 Score=29.40 Aligned_cols=24 Identities=13% Similarity=0.268 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 122 RDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 122 ~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
+++++.+.+.+++.+++.|++.+.
T Consensus 290 ElDe~~krL~ELrR~vr~L~k~l~ 313 (320)
T TIGR01834 290 ELDEAHQRIQQLRREVKSLKKRLG 313 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555555554444443
No 198
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=40.18 E-value=72 Score=22.94 Aligned_cols=33 Identities=39% Similarity=0.653 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 107 RKEEIRKQELEALRQRDEGLARELELLRQKIEE 139 (169)
Q Consensus 107 ~Kee~~~~~le~L~~~~~~l~~eve~l~~~i~e 139 (169)
+|.+...++++.|+.+...+..+...|+.+++|
T Consensus 68 rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~~e 100 (100)
T PF01486_consen 68 RKDQLLMEQIEELKKKERELEEENNQLRQKIEE 100 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 455677778888889888888888888887754
No 199
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=40.13 E-value=75 Score=22.83 Aligned_cols=34 Identities=21% Similarity=0.196 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030907 114 QELEALRQRDEGLARELELLRQKIEELEQLAKQR 147 (169)
Q Consensus 114 ~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~~ 147 (169)
+...+|++++..|+..+++...-=..||.++...
T Consensus 8 ~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~ 41 (88)
T PF14389_consen 8 ERRSALEQEVAELQKQLQEEQDLRRALEKALGRS 41 (88)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3345678888888888888887777888887654
No 200
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.04 E-value=82 Score=22.35 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 030907 123 DEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 123 ~~~l~~eve~l~~~i~ele~~~~ 145 (169)
+++|...+.+++.-++.+...++
T Consensus 24 ieeLn~~laEq~~~i~k~q~qlr 46 (72)
T COG2900 24 IEELNDALAEQQLVIDKLQAQLR 46 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444
No 201
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=39.89 E-value=2.2e+02 Score=24.07 Aligned_cols=11 Identities=36% Similarity=0.601 Sum_probs=5.5
Q ss_pred HHHHh-cCCCCc
Q 030907 142 QLAKQ-RGLSGI 152 (169)
Q Consensus 142 ~~~~~-~~~~~~ 152 (169)
++.+. .|+..+
T Consensus 99 ~~R~e~lgl~~L 110 (230)
T PF10146_consen 99 ELRKEYLGLEPL 110 (230)
T ss_pred HHHHHHcCCCCC
Confidence 33444 566554
No 202
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=39.87 E-value=1.9e+02 Score=25.08 Aligned_cols=68 Identities=21% Similarity=0.218 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 75 QAAVDLIGEIFIFTVAGAAVIFEVQRSARSEARKEEIRKQELEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 75 e~GAe~lgE~fIF~Va~~li~~E~~Rs~~ke~~Kee~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
..--.+|-.-=+|+-+.. +.||+-..+.+..+.+.+ .--+..+.++..|+.+++.++++|....+-+.
T Consensus 38 ~~Vr~lLqqy~~~~~~i~--~le~~~~~~l~~ak~eLq-e~eek~e~~l~~Lq~ql~~l~akI~k~~~el~ 105 (258)
T PF15397_consen 38 LKVRKLLQQYDIYRTAID--ILEYSNHKQLQQAKAELQ-EWEEKEESKLSKLQQQLEQLDAKIQKTQEELN 105 (258)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHccChHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444544445544444 456665555555554432 22233555666677777777777665555444
No 203
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=39.86 E-value=88 Score=23.97 Aligned_cols=34 Identities=18% Similarity=0.343 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 111 IRKQELEALRQRDEGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 111 ~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~ 144 (169)
.-..++++|.+++..++..+..++..+.+++-..
T Consensus 37 ~mhrRlDElV~Rv~~lEs~~~~lk~dVsemKpVT 70 (112)
T PF07439_consen 37 SMHRRLDELVERVTTLESSVSTLKADVSEMKPVT 70 (112)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhhHHhccchH
Confidence 4466788888888888888899999888876543
No 204
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=39.76 E-value=80 Score=30.61 Aligned_cols=43 Identities=42% Similarity=0.508 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccc
Q 030907 113 KQELEALRQRDEGLARELELLRQKIEELEQLAKQRGLSGIFSF 155 (169)
Q Consensus 113 ~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~~~~~~~~~~ 155 (169)
.+++..|+.++..|+.++..++.++..|+..+...-|.|-+|-
T Consensus 502 ~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~ 544 (722)
T PF05557_consen 502 SEELNELQKEIEELERENERLRQELEELESELEKLTLQGEFNP 544 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Confidence 4566779999999999999999999999999987667776653
No 205
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=38.93 E-value=1.3e+02 Score=22.23 Aligned_cols=31 Identities=39% Similarity=0.502 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 115 ELEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 115 ~le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
..+.++.+++.++..+..+...+.+++....
T Consensus 7 q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~ 37 (126)
T TIGR00293 7 ELQILQQQVESLQAQIAALRALIAELETAIE 37 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555554443
No 206
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=38.92 E-value=58 Score=24.34 Aligned_cols=29 Identities=14% Similarity=0.187 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 030907 80 LIGEIFIFTVAGAAVIFEVQRSARSEARK 108 (169)
Q Consensus 80 ~lgE~fIF~Va~~li~~E~~Rs~~ke~~K 108 (169)
.+.-++.+.+..++.++=.+|..+|.+++
T Consensus 17 ~~~~ll~lvii~~i~yf~~~RpqkK~~k~ 45 (106)
T PRK05585 17 GLSSLLPLVVFFAIFYFLIIRPQQKRQKE 45 (106)
T ss_pred cHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 34444445554444555566666654433
No 207
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=38.28 E-value=39 Score=25.72 Aligned_cols=22 Identities=27% Similarity=0.452 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHH
Q 030907 87 FTVAGAAVIFEVQRSARSEARKE 109 (169)
Q Consensus 87 F~Va~~li~~E~~Rs~~ke~~Ke 109 (169)
|.+..++. |-..|..+|..++.
T Consensus 9 ~vv~~~i~-yf~iRPQkKr~Ke~ 30 (113)
T PRK06531 9 FVVMLGLI-FFMQRQQKKQAQER 30 (113)
T ss_pred HHHHHHHH-HheechHHHHHHHH
Confidence 34444443 43566665544443
No 208
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=38.26 E-value=32 Score=24.32 Aligned_cols=25 Identities=8% Similarity=0.215 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHH
Q 030907 84 IFIFTVAGAAVIFEVQRSARSEARK 108 (169)
Q Consensus 84 ~fIF~Va~~li~~E~~Rs~~ke~~K 108 (169)
++++.+..++.++=.+|.++|..++
T Consensus 5 li~lv~~~~i~yf~~~rpqkk~~k~ 29 (82)
T PF02699_consen 5 LIPLVIIFVIFYFLMIRPQKKQQKE 29 (82)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhheecHHHHHHHH
Confidence 3344444455555566666554443
No 209
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=37.98 E-value=1.3e+02 Score=24.17 Aligned_cols=18 Identities=11% Similarity=0.250 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 030907 79 DLIGEIFIFTVAGAAVIFE 97 (169)
Q Consensus 79 e~lgE~fIF~Va~~li~~E 97 (169)
.++. .+++|+++++.+|=
T Consensus 32 ~~~l-~~l~~~~~~~~~~~ 49 (199)
T PF10112_consen 32 SFLL-SLLIGAVAFAVVYL 49 (199)
T ss_pred HHHH-HHHHHHHHHHHHHH
Confidence 3444 55666666655543
No 210
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=37.69 E-value=2e+02 Score=27.34 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=12.6
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHH
Q 030907 95 IFEVQRSARSEARKEEIRKQELEAL 119 (169)
Q Consensus 95 ~~E~~Rs~~ke~~Kee~~~~~le~L 119 (169)
+|-+|++.++...+-.+.-+.++.|
T Consensus 230 cw~ay~Qnk~akehv~km~kdle~L 254 (575)
T KOG4403|consen 230 CWFAYRQNKKAKEHVNKMMKDLEGL 254 (575)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 4555667666654444333444443
No 211
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=37.55 E-value=2.4e+02 Score=24.91 Aligned_cols=36 Identities=31% Similarity=0.587 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 030907 115 ELEALRQRDEGLARELELLRQKIEELEQLAKQRGLS 150 (169)
Q Consensus 115 ~le~L~~~~~~l~~eve~l~~~i~ele~~~~~~~~~ 150 (169)
+++.++...+.|..++..++.+|.+..+++...|+-
T Consensus 141 elEr~K~~~d~L~~e~~~Lre~L~~rdeli~khGlV 176 (302)
T PF09738_consen 141 ELERQKRAHDSLREELDELREQLKQRDELIEKHGLV 176 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCee
Confidence 466777888899999999999999999999988873
No 212
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=37.40 E-value=1.7e+02 Score=24.06 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 030907 118 ALRQRDEGLARELELLRQKIEEL 140 (169)
Q Consensus 118 ~L~~~~~~l~~eve~l~~~i~el 140 (169)
.++..++.|...+..++.++.++
T Consensus 110 ~~~~~v~~l~~~l~~L~~ki~~~ 132 (219)
T TIGR02977 110 AVEETLAKLQEDIAKLQAKLAEA 132 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444333
No 213
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=37.25 E-value=1.3e+02 Score=25.34 Aligned_cols=48 Identities=29% Similarity=0.290 Sum_probs=25.8
Q ss_pred HHHHhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 97 EVQRSARSEARKEE-IRKQELEALRQRDEGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 97 E~~Rs~~ke~~Kee-~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~ 144 (169)
-||+.-..++++-= .-.++-+.|...++.+..++..++.+.++|..+.
T Consensus 107 ~YWk~lAE~RR~AL~eaL~ENe~Lh~~ie~~~eEi~~lk~en~~L~ela 155 (200)
T PF07412_consen 107 NYWKELAEERRKALEEALEENEKLHKEIEQKDEEIAKLKEENEELKELA 155 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46665554433311 1123334566777777777777776665554443
No 214
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=37.24 E-value=1.1e+02 Score=27.13 Aligned_cols=34 Identities=21% Similarity=0.272 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 113 KQELEALRQRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 113 ~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
..+.+.|++++..|+.+++.|+++|+++.+.+.+
T Consensus 77 ~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eg 110 (389)
T PF06216_consen 77 SNEWISLNDQVSHLQHQNSEQRQQIREMREIIEG 110 (389)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566789999999999999999999999988875
No 215
>COG4420 Predicted membrane protein [Function unknown]
Probab=37.21 E-value=2.5e+02 Score=23.48 Aligned_cols=59 Identities=20% Similarity=0.447 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 88 TVAGAAVIFEVQRSARSEARKEEIR-------KQELEALRQRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 88 ~Va~~li~~E~~Rs~~ke~~Kee~~-------~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
++.+-+|+.-.+|++.+++..-+.. +++...|-+++++|...+-.+.++++.+.+.+..
T Consensus 101 aiqAp~IlmSQNRQa~rDr~~a~~d~qvnlkaE~e~~~l~~kLd~lr~~lg~~~~~l~~lre~l~~ 166 (191)
T COG4420 101 AIQAPLILMSQNRQAERDRLRAELDYQVNLKAEQEVAALHEKLDELRLDLGYVRDELDDLRELLAE 166 (191)
T ss_pred HHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhchHHHHHHHHH
Confidence 3455677888999998876443322 3344456666666666655555566666666554
No 216
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=36.96 E-value=1.3e+02 Score=21.93 Aligned_cols=34 Identities=21% Similarity=0.427 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 107 RKEEIRKQELEALRQRDEGLARELELLRQKIEEL 140 (169)
Q Consensus 107 ~Kee~~~~~le~L~~~~~~l~~eve~l~~~i~el 140 (169)
++.+....+++.++..+..+..++..++..++++
T Consensus 94 ~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 94 KRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445666777788888888888888888877764
No 217
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=36.92 E-value=2.1e+02 Score=23.21 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 111 IRKQELEALRQRDEGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 111 ~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~ 144 (169)
..+++.+.|+.+.+.|..+.+..+..-+.|-..+
T Consensus 115 ~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im 148 (161)
T TIGR02894 115 SLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIM 148 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666665555444
No 218
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=36.89 E-value=92 Score=24.39 Aligned_cols=36 Identities=36% Similarity=0.494 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 111 IRKQELEALRQR--DEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 111 ~~~~~le~L~~~--~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
....++..|... .++|...+..++.++.+++..+..
T Consensus 97 ~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 97 SLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEK 134 (169)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555544 356677777777777777777765
No 219
>TIGR00185 rRNA_methyl_2 rRNA methylase, putative, group 2. this is part of the trmH (spoU) family of rRNA methylases
Probab=36.87 E-value=25 Score=27.39 Aligned_cols=22 Identities=18% Similarity=0.182 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 030907 83 EIFIFTVAGAAVIFEVQRSARS 104 (169)
Q Consensus 83 E~fIF~Va~~li~~E~~Rs~~k 104 (169)
|.+=-++++++++||++|+.++
T Consensus 128 ~SLNvavA~aI~lye~~rq~~~ 149 (153)
T TIGR00185 128 RSLNLSNSVAIVVYEAWRQLGY 149 (153)
T ss_pred cchHHHHHHHHHHHHHHHccCC
Confidence 3444689999999999998654
No 220
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=36.64 E-value=1.4e+02 Score=23.68 Aligned_cols=30 Identities=43% Similarity=0.504 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 115 ELEALRQRDEGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 115 ~le~L~~~~~~l~~eve~l~~~i~ele~~~ 144 (169)
++++|...++.++..+.++..++.++++.+
T Consensus 102 ~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~ 131 (145)
T COG1730 102 RIEELEKAIEKLQQALAELAQRIEQLEQEA 131 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555554444
No 221
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=36.12 E-value=2.2e+02 Score=22.61 Aligned_cols=25 Identities=12% Similarity=0.103 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 030907 80 LIGEIFIFTVAGAAVIFEVQRSARS 104 (169)
Q Consensus 80 ~lgE~fIF~Va~~li~~E~~Rs~~k 104 (169)
++..++-|.|..+++.|-.|+--.+
T Consensus 27 ~~~~~Inflill~lL~~fl~kPI~~ 51 (184)
T CHL00019 27 LETNLINLSVVLGVLIYFGKGVLSD 51 (184)
T ss_pred HHHHHHHHHHHHHHHHHHhHhHHHH
Confidence 3356777888888888877766555
No 222
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=35.99 E-value=1e+02 Score=24.40 Aligned_cols=31 Identities=26% Similarity=0.398 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 115 ELEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 115 ~le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
++..++.+++.|+.++..+...+.+++....
T Consensus 14 ~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~ 44 (145)
T COG1730 14 QLQILQSQIESLQAQIAALNAAISELQTAIE 44 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555544443
No 223
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=35.96 E-value=4.1e+02 Score=25.71 Aligned_cols=31 Identities=19% Similarity=0.159 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 116 LEALRQRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 116 le~L~~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
..++..++..|+.++.+.+.++..|++.+..
T Consensus 380 ~~~~~~~l~~le~~l~~~~~~~~~L~~~~~~ 410 (656)
T PRK06975 380 VHQLDSQFAQLDGKLADAQSAQQALEQQYQD 410 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666777777777788888888877754
No 224
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=35.78 E-value=2e+02 Score=22.72 Aligned_cols=28 Identities=25% Similarity=0.322 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 119 LRQRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 119 L~~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
|.++++.|..++..+..+++.++....+
T Consensus 86 L~qqv~~L~~e~s~~~~E~da~k~k~e~ 113 (135)
T KOG4196|consen 86 LQQQVEKLKEENSRLRRELDAYKSKYEA 113 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555556555555543
No 225
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=35.62 E-value=2.4e+02 Score=22.89 Aligned_cols=28 Identities=36% Similarity=0.629 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 115 ELEALRQRDEGLARELELLRQKIEELEQ 142 (169)
Q Consensus 115 ~le~L~~~~~~l~~eve~l~~~i~ele~ 142 (169)
++..|+.+.++|..++.+++.+.+.+++
T Consensus 128 ~i~~L~~e~~~L~~~~~~l~~~~e~~ek 155 (189)
T PF10211_consen 128 EIEELEEEKEELEKQVQELKNKCEQLEK 155 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555444444443
No 226
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=35.49 E-value=75 Score=21.57 Aligned_cols=22 Identities=32% Similarity=0.443 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 030907 124 EGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 124 ~~l~~eve~l~~~i~ele~~~~ 145 (169)
++|+..+..|+++|..++....
T Consensus 24 ~EL~~RIa~L~aEI~R~~~~~~ 45 (59)
T PF06698_consen 24 EELEERIALLEAEIARLEAAIA 45 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 227
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=35.36 E-value=94 Score=30.58 Aligned_cols=55 Identities=22% Similarity=0.212 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 88 TVAGAAVIFEVQRSARSEARKEEIRKQELEALRQRDEGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 88 ~Va~~li~~E~~Rs~~ke~~Kee~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~ 144 (169)
+|..-+.=.|..|+.-++.. ++.++.+|++++.+..-+.+++.++-.|++-+..+
T Consensus 90 sVs~EL~ele~krqel~seI--~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~ 144 (907)
T KOG2264|consen 90 SVSLELTELEVKRQELNSEI--EEINTKIEELKRLIPQKQLELSALKGEIEQAQRQL 144 (907)
T ss_pred HHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHH
Confidence 45555555555555444332 23344555555555555555555555554444433
No 228
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=34.98 E-value=2e+02 Score=22.14 Aligned_cols=34 Identities=18% Similarity=0.315 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 112 RKQELEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 112 ~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
..++++.++.+++.++..+..++.-.+++++..+
T Consensus 79 ~~~~~~~l~~~i~~Le~~l~~L~~~~~~l~~~~~ 112 (134)
T cd04779 79 VAQEVQLVCDQIDGLEHRLKQLKPIASQTDRAQR 112 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777777777777777777777766554
No 229
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=34.85 E-value=1.3e+02 Score=20.48 Aligned_cols=37 Identities=16% Similarity=0.165 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 030907 73 AVQAAVDLIGEIFIFTVAGAAVIFEVQRSARSEARKE 109 (169)
Q Consensus 73 Ave~GAe~lgE~fIF~Va~~li~~E~~Rs~~ke~~Ke 109 (169)
.+.-+++.++=++++.+-.+++++-|+++.|++...+
T Consensus 5 ~~~~~a~a~~t~~~~l~fiavi~~ayr~~~K~~~d~a 41 (60)
T COG4736 5 MMRGFADAWGTIAFTLFFIAVIYFAYRPGKKGEFDEA 41 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHH
Confidence 3456778888888888888888888887777655443
No 230
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=34.85 E-value=1.6e+02 Score=22.19 Aligned_cols=37 Identities=27% Similarity=0.399 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 107 RKEEIRKQELEALRQRDEGLARELELLRQKIEELEQL 143 (169)
Q Consensus 107 ~Kee~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~ 143 (169)
++.+.....++.++..+..+..+++.+...+.++..-
T Consensus 101 ~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 137 (140)
T PRK03947 101 KRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQE 137 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566677778888888888888888877776543
No 231
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=34.47 E-value=2.5e+02 Score=26.72 Aligned_cols=30 Identities=13% Similarity=0.264 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 030907 81 IGEIFIFTVAGAAVIFEVQRSARSEARKEE 110 (169)
Q Consensus 81 lgE~fIF~Va~~li~~E~~Rs~~ke~~Kee 110 (169)
|.=.++.+|+|.+..|-..+.++.--+|=.
T Consensus 219 Lv~lili~v~gcw~ay~Qnk~akehv~km~ 248 (575)
T KOG4403|consen 219 LVVLILIGVGGCWFAYRQNKKAKEHVNKMM 248 (575)
T ss_pred HHHHHHHHhhhhhhhhhhhhHHHHHHHHHH
Confidence 344456899999999999888877654443
No 232
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=34.43 E-value=1.6e+02 Score=20.45 Aligned_cols=32 Identities=28% Similarity=0.507 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 111 IRKQELEALRQRDEGLARELELLRQKIEELEQ 142 (169)
Q Consensus 111 ~~~~~le~L~~~~~~l~~eve~l~~~i~ele~ 142 (169)
.....+..|+..+.+++.++..++.+++..+.
T Consensus 30 ~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~ 61 (74)
T PF12329_consen 30 KLNNTIKKLRAKIKELEKQIKELKKKLEELEK 61 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555544444443
No 233
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.39 E-value=3.1e+02 Score=23.97 Aligned_cols=26 Identities=23% Similarity=0.473 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 115 ELEALRQRDEGLARELELLRQKIEEL 140 (169)
Q Consensus 115 ~le~L~~~~~~l~~eve~l~~~i~el 140 (169)
+++.|..+++++...++.++.+++++
T Consensus 53 ei~~L~~qi~~~~~k~~~~~~~i~~~ 78 (265)
T COG3883 53 EIESLDNQIEEIQSKIDELQKEIDQS 78 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444333333333333
No 234
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=34.23 E-value=2.4e+02 Score=22.44 Aligned_cols=57 Identities=9% Similarity=-0.047 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 79 DLIGEIFIFTVAGAAVIFEVQRSARSEA-RKEEIRKQELEALRQRDEGLARELELLRQ 135 (169)
Q Consensus 79 e~lgE~fIF~Va~~li~~E~~Rs~~ke~-~Kee~~~~~le~L~~~~~~l~~eve~l~~ 135 (169)
+++..++.|.|..+++..-.|+--.+-- .+++...+.+++-++..++.+.-.++.+.
T Consensus 6 ~~fwq~I~FlIll~ll~kfawkPI~~~LeeR~~~I~~~Ld~Ae~~r~eA~~l~~e~e~ 63 (154)
T PRK06568 6 ESFWLAVSFVIFVYLIYRPAKKAILNSLDAKILEVQEKVLKAEKLKEDAALLFEQTNA 63 (154)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777776666666555532 33334444444433333333333333333
No 235
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=34.23 E-value=1.4e+02 Score=24.71 Aligned_cols=10 Identities=10% Similarity=0.265 Sum_probs=5.8
Q ss_pred HHHHHHHHhh
Q 030907 45 NHRITTRMQR 54 (169)
Q Consensus 45 ~h~~e~rl~~ 54 (169)
...+|+.+++
T Consensus 53 ~~~~EmQlrr 62 (179)
T PF14723_consen 53 PSSTEMQLRR 62 (179)
T ss_pred ccCHHHHHHH
Confidence 4456776654
No 236
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=34.01 E-value=1.1e+02 Score=20.48 Aligned_cols=32 Identities=13% Similarity=0.428 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 113 KQELEALRQRDEGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 113 ~~~le~L~~~~~~l~~eve~l~~~i~ele~~~ 144 (169)
...++.++.+.+++..+++.++..++.+=.+.
T Consensus 13 ~~~i~tvk~en~~i~~~ve~i~envk~ll~lY 44 (55)
T PF05377_consen 13 ESSINTVKKENEEISESVEKIEENVKDLLSLY 44 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466777777777777777777776654443
No 237
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=33.82 E-value=96 Score=23.49 Aligned_cols=19 Identities=16% Similarity=0.307 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHhhhhH
Q 030907 87 FTVAGAAVIFEVQRSARSE 105 (169)
Q Consensus 87 F~Va~~li~~E~~Rs~~ke 105 (169)
|.+..++++|=..|..+|.
T Consensus 10 lv~i~~i~yF~~iRPQkKr 28 (109)
T PRK05886 10 FLLIMGGFMYFASRRQRKA 28 (109)
T ss_pred HHHHHHHHHHHHccHHHHH
Confidence 4444444455555555543
No 238
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=33.81 E-value=2e+02 Score=22.69 Aligned_cols=33 Identities=39% Similarity=0.614 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 113 KQELEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 113 ~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
..++..++...+.|...++..+.+|.+|+....
T Consensus 72 ~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~ 104 (140)
T PF10473_consen 72 ELELDTLRSEKENLDKELQKKQEKVSELESLNS 104 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 445556666667777777777777777766553
No 239
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=33.76 E-value=69 Score=21.74 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 115 ELEALRQRDEGLARELELLRQKIEEL 140 (169)
Q Consensus 115 ~le~L~~~~~~l~~eve~l~~~i~el 140 (169)
.+++|+.+|..|+.|+..+++.+..-
T Consensus 22 Sv~EL~~RIa~L~aEI~R~~~~~~~K 47 (59)
T PF06698_consen 22 SVEELEERIALLEAEIARLEAAIAKK 47 (59)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888888888888777643
No 240
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=33.68 E-value=2.9e+02 Score=24.63 Aligned_cols=29 Identities=7% Similarity=-0.030 Sum_probs=20.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 66 RPLNEEKAVQAAVDLIGEIFIFTVAGAAV 94 (169)
Q Consensus 66 ~pL~Ee~Ave~GAe~lgE~fIF~Va~~li 94 (169)
.-.+...++..+.+++..+++..+++.++
T Consensus 167 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~v 195 (342)
T TIGR01404 167 PYCGLDGLAPIVGELLKLLILVCLGFFLV 195 (342)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888888889988888765544443
No 241
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=33.31 E-value=96 Score=29.24 Aligned_cols=29 Identities=24% Similarity=0.296 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 118 ALRQRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 118 ~L~~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
+|++++++|+.....+-++++.++.++..
T Consensus 290 eL~kkV~~Le~~N~sLl~qL~klQt~v~q 318 (472)
T KOG0709|consen 290 ELQKKVEELELSNRSLLAQLKKLQTLVIQ 318 (472)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHhh
Confidence 47777777777777777777777766643
No 242
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=33.26 E-value=2.9e+02 Score=23.04 Aligned_cols=32 Identities=31% Similarity=0.312 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 113 KQELEALRQRDEGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 113 ~~~le~L~~~~~~l~~eve~l~~~i~ele~~~ 144 (169)
.++...|..+++.+..+++.++...+.+++.+
T Consensus 48 ~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v 79 (251)
T PF11932_consen 48 DDEKQELLAEYRQLEREIENLEVYNEQLERQV 79 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444443
No 243
>PF08941 USP8_interact: USP8 interacting; InterPro: IPR015036 This protein interacts with the UBP deubiquitinating enzyme USP8. ; GO: 0016881 acid-amino acid ligase activity, 0031386 protein tag, 0016567 protein ubiquitination; PDB: 2FZP_A 2GWF_B 2OGB_A.
Probab=33.24 E-value=14 Score=30.43 Aligned_cols=40 Identities=13% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 030907 111 IRKQELEALRQRDEGLARELELLRQKIEELEQLAKQRGLS 150 (169)
Q Consensus 111 ~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~~~~~ 150 (169)
.+++++.+|++.+.+++.++.+++.++.-|..+.+++..+
T Consensus 8 ~Qq~~i~ELk~~~aeq~~ql~eqkREl~lLk~yirAlR~s 47 (179)
T PF08941_consen 8 QQQTKIAELKKEQAEQQQQLSEQKRELELLKEYIRALRSS 47 (179)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4566777888888888888888888888888888775433
No 244
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=33.23 E-value=2e+02 Score=21.32 Aligned_cols=26 Identities=19% Similarity=0.207 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 114 QELEALRQRDEGLARELELLRQKIEE 139 (169)
Q Consensus 114 ~~le~L~~~~~~l~~eve~l~~~i~e 139 (169)
++++.|+.++.+++..++.+...+..
T Consensus 87 ~~~~~l~~~~~~l~~~~~~L~~~~~~ 112 (118)
T cd04776 87 KRRAELEQQRRDIDAALAELDAAEER 112 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444443333
No 245
>PRK01770 sec-independent translocase; Provisional
Probab=33.18 E-value=2.7e+02 Score=22.74 Aligned_cols=16 Identities=25% Similarity=0.409 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 030907 81 IGEIFIFTVAGAAVIF 96 (169)
Q Consensus 81 lgE~fIF~Va~~li~~ 96 (169)
++|++|.+|.+.+++.
T Consensus 6 ~~ELllI~vVaLlV~G 21 (171)
T PRK01770 6 FSELLLVFVIGLVVLG 21 (171)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 4688888777777643
No 246
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=33.06 E-value=1.5e+02 Score=21.34 Aligned_cols=34 Identities=24% Similarity=0.335 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 108 KEEIRKQELEALRQRDEGLARELELLRQKIEELE 141 (169)
Q Consensus 108 Kee~~~~~le~L~~~~~~l~~eve~l~~~i~ele 141 (169)
|.+.....++.++.++..+..++..+...++++-
T Consensus 85 r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 118 (120)
T PF02996_consen 85 RIKELEEQLEKLEKELAELQAQIEQLEQTLQQLY 118 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445556666777777777777777777766654
No 247
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=32.96 E-value=1.4e+02 Score=26.10 Aligned_cols=31 Identities=19% Similarity=0.332 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 116 LEALRQRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 116 le~L~~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
.++|+.++.+++.+...++.+++.+++.+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (364)
T TIGR01242 8 IRKLEDEKRSLEKEKIRLERELERLRSEIER 38 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555543
No 248
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=32.78 E-value=1.5e+02 Score=22.44 Aligned_cols=18 Identities=39% Similarity=0.595 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 030907 123 DEGLARELELLRQKIEEL 140 (169)
Q Consensus 123 ~~~l~~eve~l~~~i~el 140 (169)
-..|..|.+.|+.+++++
T Consensus 38 N~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 38 NTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 334444444444444444
No 249
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=32.58 E-value=2e+02 Score=21.37 Aligned_cols=14 Identities=21% Similarity=0.195 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHhh
Q 030907 89 VAGAAVIFEVQRSA 102 (169)
Q Consensus 89 Va~~li~~E~~Rs~ 102 (169)
+++.++++=.+|..
T Consensus 12 ~a~~~v~~pl~r~~ 25 (117)
T TIGR03142 12 VALLFLLLPLLRRR 25 (117)
T ss_pred HHHHHHHHHHhcCc
Confidence 34445555566653
No 250
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=32.29 E-value=1.6e+02 Score=19.85 Aligned_cols=33 Identities=15% Similarity=0.344 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 108 KEEIRKQELEALRQRDEGLARELELLRQKIEEL 140 (169)
Q Consensus 108 Kee~~~~~le~L~~~~~~l~~eve~l~~~i~el 140 (169)
|-+....+...|..+++.|..++..++..+...
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~a 36 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAA 36 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555566667777777777766666544
No 251
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=32.27 E-value=1.1e+02 Score=21.86 Aligned_cols=32 Identities=31% Similarity=0.339 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 109 EEIRKQELEALRQRDEGLARELELLRQKIEEL 140 (169)
Q Consensus 109 ee~~~~~le~L~~~~~~l~~eve~l~~~i~el 140 (169)
-+..++++++++.++..+..+.+.++.++.-|
T Consensus 72 ~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~L 103 (104)
T PF13600_consen 72 LKELEEELEALEDELAALQDEIQALEAQIAFL 103 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556777888888888888888888877644
No 252
>PRK15418 transcriptional regulator LsrR; Provisional
Probab=32.24 E-value=30 Score=30.33 Aligned_cols=85 Identities=8% Similarity=0.133 Sum_probs=58.7
Q ss_pred hhhHHHHHHHHHHhhChhhhHhhhchhHHHHHHHHHHhhHHhcCCCCCCcCCC-CHH----HHHHHHHHHHHHHH----H
Q 030907 16 LSKPVAAKLKQQAAIHPRFRQSIVGIAQANHRITTRMQRRIYGHATGGEIRPL-NEE----KAVQAAVDLIGEIF----I 86 (169)
Q Consensus 16 iSKPian~iK~~A~~~p~fR~~~i~~gq~~h~~e~rl~~~~lg~~~~~~i~pL-~Ee----~Ave~GAe~lgE~f----I 86 (169)
+|+|-++++-..|++....+=.+-.+-.....+|.+++.++ |... +-|-|- +++ .--..+|++|.+.+ +
T Consensus 41 iSR~~VsRlL~~Ar~~GiV~I~I~~~~~~~~~Le~~L~~~f-gLk~-~iVvp~~~~~~~~~~vg~~aA~~L~~~l~~~~~ 118 (318)
T PRK15418 41 LTRLKVSRLLEKGRQSGIIRVQINSRFEGCLELENALRQHF-SLQH-IRVLPALADADIGGRLGIGAAHMLMSLLQPQQL 118 (318)
T ss_pred CCHHHHHHHHHHHHHcCcEEEEEeCCCccHHHHHHHHHHHh-CCCE-EEEEeCCCcccHHHHHHHHHHHHHHHhcCCCCE
Confidence 79999999999999887776555444455677999988765 6642 323222 212 22356788888874 6
Q ss_pred HHHHHHHHHHHHHHhh
Q 030907 87 FTVAGAAVIFEVQRSA 102 (169)
Q Consensus 87 F~Va~~li~~E~~Rs~ 102 (169)
.||++|--+++..+.-
T Consensus 119 IGvswG~Tl~~~~~~l 134 (318)
T PRK15418 119 LAVGFGEATMNTLQHL 134 (318)
T ss_pred EEEcchHHHHHHHHhc
Confidence 7899998888887654
No 253
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=32.19 E-value=2.4e+02 Score=21.83 Aligned_cols=27 Identities=7% Similarity=-0.080 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 030907 78 VDLIGEIFIFTVAGAAVIFEVQRSARS 104 (169)
Q Consensus 78 Ae~lgE~fIF~Va~~li~~E~~Rs~~k 104 (169)
.+++..++.|.|...++-.-+|+--.+
T Consensus 23 ~t~~~~~inFliL~~lL~k~l~~Pi~~ 49 (156)
T CHL00118 23 ATLPLMALQFLLLMVLLNIILYKPLLK 49 (156)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888777776655555443
No 254
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=32.14 E-value=2.4e+02 Score=21.89 Aligned_cols=33 Identities=24% Similarity=0.519 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 113 KQELEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 113 ~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
.+++..|+.++..++.+++.+..++.+....+.
T Consensus 34 E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~le 66 (143)
T PF12718_consen 34 EQEITSLQKKNQQLEEELDKLEEQLKEAKEKLE 66 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666666665554
No 255
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=32.06 E-value=3.1e+02 Score=23.02 Aligned_cols=29 Identities=24% Similarity=0.296 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 030907 117 EALRQRDEGLARELE---LLRQKIEELEQLAK 145 (169)
Q Consensus 117 e~L~~~~~~l~~eve---~l~~~i~ele~~~~ 145 (169)
++|++++.+|..++. .++++.++|.+++.
T Consensus 79 ~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 79 EELKKELLELESRLQELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455544444444 44555555555554
No 256
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=32.01 E-value=1.8e+02 Score=20.23 Aligned_cols=35 Identities=26% Similarity=0.406 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 111 IRKQELEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 111 ~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
..+....+++..+.++...++.....+..+++.+.
T Consensus 37 KLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 37 KLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445555566666666666666666666665554
No 257
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=31.88 E-value=1.7e+02 Score=28.61 Aligned_cols=33 Identities=27% Similarity=0.454 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 112 RKQELEALRQRDEGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 112 ~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~ 144 (169)
++.+++.|+.++.+-...++.|+.++.+++++.
T Consensus 479 ~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~~ 511 (652)
T COG2433 479 RDRRIERLEKELEEKKKRVEELERKLAELRKMR 511 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777777777777777776444
No 258
>PRK10358 putative rRNA methylase; Provisional
Probab=31.77 E-value=38 Score=26.68 Aligned_cols=20 Identities=20% Similarity=0.257 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 030907 83 EIFIFTVAGAAVIFEVQRSA 102 (169)
Q Consensus 83 E~fIF~Va~~li~~E~~Rs~ 102 (169)
|.+=-++++++++||.+|+.
T Consensus 129 eSLNvAvA~aI~lyE~~rqr 148 (157)
T PRK10358 129 RSMNLSNAVSVVVYEAWRQL 148 (157)
T ss_pred ccchHHHHHHHHHHHHHHhh
Confidence 45556899999999999985
No 259
>PRK14127 cell division protein GpsB; Provisional
Probab=31.74 E-value=2.2e+02 Score=21.49 Aligned_cols=30 Identities=23% Similarity=0.346 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 116 LEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 116 le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
|+.+-...+.+..++..|+.++..+++.+.
T Consensus 32 Ld~V~~dye~l~~e~~~Lk~e~~~l~~~l~ 61 (109)
T PRK14127 32 LDDVIKDYEAFQKEIEELQQENARLKAQVD 61 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444443
No 260
>PF11683 DUF3278: Protein of unknown function (DUF3278); InterPro: IPR021697 This bacterial family of proteins has no known function.
Probab=31.72 E-value=2.3e+02 Score=21.49 Aligned_cols=42 Identities=21% Similarity=0.426 Sum_probs=27.2
Q ss_pred HHHHHhhHHhcCCCCCCcCCCCH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 48 ITTRMQRRIYGHATGGEIRPLNE---EKAVQAAVDLIGEIFIFTVAGAAV 94 (169)
Q Consensus 48 ~e~rl~~~~lg~~~~~~i~pL~E---e~Ave~GAe~lgE~fIF~Va~~li 94 (169)
+..|+=++++|.. -||+| +.+=..|++.+.-+|.|...+.++
T Consensus 6 ~~~KliK~fygI~-----GplDE~r~~ei~rign~a~i~l~~~~l~~~li 50 (129)
T PF11683_consen 6 FTTKLIKRFYGIQ-----GPLDEYRRQEINRIGNNAFIILFYYSLLLNLI 50 (129)
T ss_pred HHHHHHHHHhCCC-----CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888875 36888 556667777776666654444333
No 261
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=31.67 E-value=65 Score=26.65 Aligned_cols=74 Identities=14% Similarity=0.060 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 72 KAVQAAVDLIGEIFIFTVAGAAVIFEVQRSARSEARKEE---IRKQELEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 72 ~Ave~GAe~lgE~fIF~Va~~li~~E~~Rs~~ke~~Kee---~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
.+.|+=.+++.=.+-=|+.++-..+--....+|+...+. +.+.++++|+.+++++...+.+|...+.+.++-++
T Consensus 68 ~gadlLgE~~iF~vggg~lv~Ey~R~~~~e~~kee~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~~~l~~~~~el~ 144 (181)
T KOG3335|consen 68 AGADLLGELFIFSVGGGVLVFEYWRQARKERKKEEKRKQEIMELRLKVEKLENAIAELTKFFSQLHSKLNKPESELK 144 (181)
T ss_pred HHHHHHhhHHheeecceeeeehhHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc
Confidence 333333333333333344444444444444444433222 44556667777777888888777777666665444
No 262
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=31.52 E-value=1.3e+02 Score=28.67 Aligned_cols=31 Identities=23% Similarity=0.343 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 116 LEALRQRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 116 le~L~~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
...++.+++.++.+++.++.++.+++..+..
T Consensus 558 ~~~~~~~~~~~e~~i~~le~~~~~l~~~l~~ 588 (638)
T PRK10636 558 TQPLRKEIARLEKEMEKLNAQLAQAEEKLGD 588 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4455667778888999999999999888743
No 263
>COG4795 PulJ Type II secretory pathway, component PulJ [Intracellular trafficking and secretion]
Probab=31.42 E-value=3e+02 Score=22.75 Aligned_cols=45 Identities=22% Similarity=0.180 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 82 GEIFIFTVAGAAVIFEVQRSARSEARKEEIRKQELEALRQRDEGLA 127 (169)
Q Consensus 82 gE~fIF~Va~~li~~E~~Rs~~ke~~Kee~~~~~le~L~~~~~~l~ 127 (169)
.=+.||++.+.+. |-...|..++...-+.+.++.++|+..+..++
T Consensus 16 vAl~i~All~l~a-~~~L~s~~r~~~~~~~~~~r~~eL~ra~~~l~ 60 (194)
T COG4795 16 VALAIFALLLLLA-FRFLDSAQRSNQASEARLQREAELQRAMALLE 60 (194)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344565554444 44444555444443444444444444433333
No 264
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=31.27 E-value=2.2e+02 Score=21.12 Aligned_cols=32 Identities=19% Similarity=0.326 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 114 QELEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 114 ~~le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
+.++.++++++.++.++..++..++.|+....
T Consensus 80 ~~~~~l~~~~~~l~~~~~~l~~~~~~L~~~~~ 111 (118)
T cd04776 80 KMLEKIEKRRAELEQQRRDIDAALAELDAAEE 111 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777777777777777777766553
No 265
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=31.13 E-value=1.6e+02 Score=25.12 Aligned_cols=36 Identities=8% Similarity=0.118 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 109 EEIRKQELEALRQRDEGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 109 ee~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~ 144 (169)
=+..++++.+|+-++|++.-+++.++.|-+++-.-+
T Consensus 63 l~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dl 98 (263)
T PRK10803 63 LSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQI 98 (263)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777788888877777777777666654433
No 266
>TIGR03592 yidC_oxa1_cterm membrane protein insertase, YidC/Oxa1 family, C-terminal domain. This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here.
Probab=31.04 E-value=2.7e+02 Score=22.09 Aligned_cols=40 Identities=10% Similarity=0.222 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 030907 85 FIFTVAGAAVIFEVQRSARSEARKEEIRKQELEALRQRDE 124 (169)
Q Consensus 85 fIF~Va~~li~~E~~Rs~~ke~~Kee~~~~~le~L~~~~~ 124 (169)
++++++.=++++=..-.+.+...|-.+.+-++++++++..
T Consensus 7 i~~ti~vR~~~~Pl~~~~~~~~~km~~i~P~~~~i~~k~k 46 (181)
T TIGR03592 7 ILLTIIVRLLLLPLTLKQYKSMRKMQELQPKLKEIQEKYK 46 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4456665555555555566666666667777777777654
No 267
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=30.69 E-value=3.3e+02 Score=23.00 Aligned_cols=16 Identities=38% Similarity=0.569 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 030907 129 ELELLRQKIEELEQLA 144 (169)
Q Consensus 129 eve~l~~~i~ele~~~ 144 (169)
.++.+++++.|+|+.+
T Consensus 74 nL~~lr~Ql~emee~~ 89 (211)
T COG3167 74 NLEALRAQLAEMEERF 89 (211)
T ss_pred chHHHHHHHHHHHHHH
Confidence 3444555555555443
No 268
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=30.68 E-value=2.3e+02 Score=22.33 Aligned_cols=25 Identities=24% Similarity=0.512 Sum_probs=12.2
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHH
Q 030907 114 QELEALRQ---RDEGLARELELLRQKIE 138 (169)
Q Consensus 114 ~~le~L~~---~~~~l~~eve~l~~~i~ 138 (169)
.+++.|+. .+++|..+++.++....
T Consensus 41 ~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 41 KQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 34444444 34455555555555544
No 269
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=30.68 E-value=82 Score=22.14 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 120 RQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 120 ~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
+++.+.+..-+...+.+|++||..+.
T Consensus 49 REEFd~q~~~L~~~r~kl~~LEarl~ 74 (79)
T PF04380_consen 49 REEFDAQKAVLARTREKLEALEARLA 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455556666666777777766654
No 270
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=30.64 E-value=1.6e+02 Score=31.09 Aligned_cols=39 Identities=21% Similarity=0.308 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 107 RKEEIRKQELEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 107 ~Kee~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
.++..++.++.+|+.++.+|..++..+++++.++++...
T Consensus 735 aR~~~R~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~ 773 (1353)
T TIGR02680 735 ARERARLRRIAELDARLAAVDDELAELARELRALGARQR 773 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666777777666666666666666655543
No 271
>PRK11081 tRNA guanosine-2'-O-methyltransferase; Provisional
Probab=30.64 E-value=40 Score=28.45 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 030907 83 EIFIFTVAGAAVIFEVQRSARS 104 (169)
Q Consensus 83 E~fIF~Va~~li~~E~~Rs~~k 104 (169)
|.+=-+||+++++||++|++..
T Consensus 146 ~SLNVSvAaaIiLyE~~Rqr~~ 167 (229)
T PRK11081 146 QSLNVSVASALILYEAQRQRQN 167 (229)
T ss_pred CceeHHHHHHHHHHHHHHhhcc
Confidence 3444689999999999998654
No 272
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=30.31 E-value=2.1e+02 Score=22.86 Aligned_cols=28 Identities=36% Similarity=0.460 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 117 EALRQRDEGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 117 e~L~~~~~~l~~eve~l~~~i~ele~~~ 144 (169)
..|+.+++.+..+++.++..-.++.+..
T Consensus 60 ~~l~~~l~~~~~el~~le~~k~~id~~A 87 (180)
T PF04678_consen 60 RQLRKRLEELRQELAPLEKIKQEIDEKA 87 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433
No 273
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=30.27 E-value=2.1e+02 Score=20.57 Aligned_cols=29 Identities=10% Similarity=0.347 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 111 IRKQELEALRQRDEGLARELELLRQKIEE 139 (169)
Q Consensus 111 ~~~~~le~L~~~~~~l~~eve~l~~~i~e 139 (169)
+.-.....|..+++.|+.+++.++.++..
T Consensus 29 qlss~vq~LnAkv~qLe~dv~a~~~~~qA 57 (78)
T COG4238 29 QLSSDVQTLNAKVDQLENDVNAMRSDVQA 57 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445666666666666666655543
No 274
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=30.24 E-value=1e+02 Score=20.05 Aligned_cols=24 Identities=17% Similarity=0.369 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 113 KQELEALRQRDEGLARELELLRQK 136 (169)
Q Consensus 113 ~~~le~L~~~~~~l~~eve~l~~~ 136 (169)
++.-+.++++++++..++.+|+++
T Consensus 11 qe~~d~IEqkiedid~qIaeLe~K 34 (46)
T PF08946_consen 11 QEHYDNIEQKIEDIDEQIAELEAK 34 (46)
T ss_dssp ----THHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHhHHHHHHHHHHHHHH
Confidence 333444555555555555444444
No 275
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=30.21 E-value=3.1e+02 Score=24.73 Aligned_cols=28 Identities=32% Similarity=0.489 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 030907 121 QRDEGLARELELLRQKIEELEQLAKQRG 148 (169)
Q Consensus 121 ~~~~~l~~eve~l~~~i~ele~~~~~~~ 148 (169)
.++.+++.+++.++.++.++++.....|
T Consensus 273 ~k~~~~~~q~~~~~k~~~~~~~~~~~~~ 300 (406)
T PF02388_consen 273 NKLKELEEQLASLEKRIEEAEELIAEYG 300 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3577888888888899999998876544
No 276
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=30.20 E-value=1.9e+02 Score=20.11 Aligned_cols=25 Identities=8% Similarity=0.178 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 111 IRKQELEALRQRDEGLARELELLRQ 135 (169)
Q Consensus 111 ~~~~~le~L~~~~~~l~~eve~l~~ 135 (169)
..+++++.+..+.+++-.+...+..
T Consensus 37 ~l~~~~~~i~~e~~~ll~~~n~l~~ 61 (90)
T PF06103_consen 37 TLQEQVDPITKEINDLLHNTNELLE 61 (90)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555544444444443
No 277
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=30.17 E-value=2.8e+02 Score=22.30 Aligned_cols=35 Identities=14% Similarity=0.260 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 111 IRKQELEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 111 ~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
....++..|+.+++.+...+...-.+|.+.+..|.
T Consensus 26 ~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~ 60 (188)
T PF10018_consen 26 ENQARIQQLRAEIEELDEQIRDILKQLKEARKELR 60 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555554444443
No 278
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=30.14 E-value=1.9e+02 Score=22.27 Aligned_cols=34 Identities=24% Similarity=0.435 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 107 RKEEIRKQELEALRQRDEGLARELELLRQKIEEL 140 (169)
Q Consensus 107 ~Kee~~~~~le~L~~~~~~l~~eve~l~~~i~el 140 (169)
.+.+-..-+++.|+++.+.++.+++.++..|...
T Consensus 77 er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 77 ERKETLELRIKTLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556667788889999999999999999887754
No 279
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=30.11 E-value=1.6e+02 Score=28.49 Aligned_cols=31 Identities=32% Similarity=0.468 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 111 IRKQELEALRQRDEGLARELELLRQKIEELE 141 (169)
Q Consensus 111 ~~~~~le~L~~~~~~l~~eve~l~~~i~ele 141 (169)
.+.+++++|+++++++..+++.+...++.+.
T Consensus 325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~ 355 (594)
T PF05667_consen 325 EQEQELEELQEQLDELESQIEELEAEIKMLK 355 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666655555555555555443
No 280
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=30.08 E-value=1.7e+02 Score=25.16 Aligned_cols=26 Identities=27% Similarity=0.221 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 119 LRQRDEGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 119 L~~~~~~l~~eve~l~~~i~ele~~~ 144 (169)
|-+.+--++..|+.+++||++||+.+
T Consensus 46 laQ~vlvQE~AL~~a~~ri~eLe~ql 71 (247)
T PF09849_consen 46 LAQTVLVQEQALKQAQARIQELEAQL 71 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667778888999999999999887
No 281
>PRK06835 DNA replication protein DnaC; Validated
Probab=29.97 E-value=3.9e+02 Score=23.57 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHH----HHHHHhcCCC
Q 030907 127 ARELELLRQKIEEL----EQLAKQRGLS 150 (169)
Q Consensus 127 ~~eve~l~~~i~el----e~~~~~~~~~ 150 (169)
...++.++.++.+| .++|...|.|
T Consensus 64 ~~~~~~l~~~~~~l~~~~~~lL~~~g~~ 91 (329)
T PRK06835 64 EETLKELKEKITDLRVKKAELLVSNGYP 91 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 55677888888887 5667777765
No 282
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=29.89 E-value=2.1e+02 Score=20.86 Aligned_cols=21 Identities=10% Similarity=0.002 Sum_probs=10.0
Q ss_pred HHHHH-HHHHHHHHHHHhhhhH
Q 030907 85 FIFTV-AGAAVIFEVQRSARSE 105 (169)
Q Consensus 85 fIF~V-a~~li~~E~~Rs~~ke 105 (169)
+.||+ +++.+.|=+..=..++
T Consensus 46 v~fG~Ysl~~lgy~v~tFnDcp 67 (91)
T PF08285_consen 46 VSFGCYSLFTLGYGVATFNDCP 67 (91)
T ss_pred HHHHHHHHHHHHHhhhccCCCH
Confidence 33443 4444555555545544
No 283
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=29.77 E-value=1.8e+02 Score=27.36 Aligned_cols=26 Identities=38% Similarity=0.670 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 116 LEALRQRDEGLARELELLRQKIEELE 141 (169)
Q Consensus 116 le~L~~~~~~l~~eve~l~~~i~ele 141 (169)
+++++.+..++.++++.++.+++||+
T Consensus 177 L~~l~~~~~~~~~eld~L~~ql~ELe 202 (563)
T TIGR00634 177 LKDRQQKEQELAQRLDFLQFQLEELE 202 (563)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 284
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=29.69 E-value=2.7e+02 Score=24.01 Aligned_cols=15 Identities=27% Similarity=0.295 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHh
Q 030907 132 LLRQKIEELEQLAKQ 146 (169)
Q Consensus 132 ~l~~~i~ele~~~~~ 146 (169)
+++++.++|+++|.-
T Consensus 95 ~l~~EN~rLr~LL~~ 109 (283)
T TIGR00219 95 NLKQENVRLRELLNS 109 (283)
T ss_pred HHHHHHHHHHHHhcC
Confidence 355555566666643
No 285
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=29.55 E-value=1.6e+02 Score=19.05 Aligned_cols=18 Identities=28% Similarity=0.625 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 030907 125 GLARELELLRQKIEELEQ 142 (169)
Q Consensus 125 ~l~~eve~l~~~i~ele~ 142 (169)
.|...++.+..|++.||.
T Consensus 27 ~Lt~kL~~vs~RLe~LEn 44 (47)
T PF10393_consen 27 SLTQKLDAVSKRLEALEN 44 (47)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 333444555555555554
No 286
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=29.53 E-value=2.1e+02 Score=22.61 Aligned_cols=31 Identities=32% Similarity=0.556 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 113 KQELEALRQRDEGLARELELLRQKIEELEQL 143 (169)
Q Consensus 113 ~~~le~L~~~~~~l~~eve~l~~~i~ele~~ 143 (169)
.++++.|..+...+..|+..++.+.+.+..-
T Consensus 87 ~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~ 117 (135)
T KOG4196|consen 87 QQQVEKLKEENSRLRRELDAYKSKYEALQNS 117 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445555555555555555555555444433
No 287
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=29.53 E-value=1.8e+02 Score=24.89 Aligned_cols=29 Identities=28% Similarity=0.331 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 116 LEALRQRDEGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 116 le~L~~~~~~l~~eve~l~~~i~ele~~~ 144 (169)
+..|+.+++.|..+...|-.+++-|...-
T Consensus 109 ~~~L~~Ev~~L~~DN~kLYEKiRylqSY~ 137 (248)
T PF08172_consen 109 ISSLRREVESLRADNVKLYEKIRYLQSYN 137 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 33344444444444444445555554444
No 288
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=29.52 E-value=1.6e+02 Score=23.90 Aligned_cols=27 Identities=26% Similarity=0.338 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 118 ALRQRDEGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 118 ~L~~~~~~l~~eve~l~~~i~ele~~~ 144 (169)
+|+.++..++.||..|++-|..-|+.+
T Consensus 33 eLr~EL~KvEeEI~TLrqvL~aKer~~ 59 (162)
T PF04201_consen 33 ELRSELAKVEEEIQTLRQVLAAKERHC 59 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344444444444445544444444333
No 289
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=29.47 E-value=1.8e+02 Score=23.14 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhH
Q 030907 80 LIGEIFIFTVAGAAVIFEVQRSARSE 105 (169)
Q Consensus 80 ~lgE~fIF~Va~~li~~E~~Rs~~ke 105 (169)
||..++.+.|+.++++.=+.....+.
T Consensus 10 FlaK~vTvVvaI~~vv~~I~~~~~k~ 35 (155)
T PF08496_consen 10 FLAKIVTVVVAILAVVGLIVAAAQKK 35 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 66777777677776666655544443
No 290
>PF03234 CDC37_N: Cdc37 N terminal kinase binding; InterPro: IPR013855 In Saccharomyces cerevisiae (Baker's yeast), cell division control protein Cdc37 is required for the productive formation of Cdc28-cyclin complexes. Cdc37 may be a kinase targeting subunit of Hsp90 [].
Probab=29.47 E-value=2.5e+02 Score=22.92 Aligned_cols=29 Identities=17% Similarity=0.228 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 118 ALRQRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 118 ~L~~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
+.+.+++.|..+.......+.++++.+.+
T Consensus 43 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 71 (177)
T PF03234_consen 43 ERKQEIEELKYERKINEKLLKRIQKLLSA 71 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444455555555555544
No 291
>COG0566 SpoU rRNA methylases [Translation, ribosomal structure and biogenesis]
Probab=29.32 E-value=41 Score=28.66 Aligned_cols=17 Identities=29% Similarity=0.618 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHhhh
Q 030907 87 FTVAGAAVIFEVQRSAR 103 (169)
Q Consensus 87 F~Va~~li~~E~~Rs~~ 103 (169)
-+||+|+++||+.|+..
T Consensus 242 VsvAagI~Lye~~rq~~ 258 (260)
T COG0566 242 VSVAAGILLYEARRQRR 258 (260)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 58999999999999875
No 292
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=29.26 E-value=2e+02 Score=20.88 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 117 EALRQRDEGLARELELLRQKIEELEQL 143 (169)
Q Consensus 117 e~L~~~~~~l~~eve~l~~~i~ele~~ 143 (169)
+-|+++..+++.+++.++..++.|+..
T Consensus 82 ~~l~~~~~~l~~~i~~l~~~~~~l~~~ 108 (113)
T cd01109 82 ELLEEHREELEEQIAELQETLAYLDYK 108 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555443
No 293
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=28.91 E-value=2.5e+02 Score=22.73 Aligned_cols=20 Identities=30% Similarity=0.512 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 030907 127 ARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 127 ~~eve~l~~~i~ele~~~~~ 146 (169)
.+|++++-++|..||+.+..
T Consensus 124 r~e~ee~~~~l~~le~~~~~ 143 (175)
T PRK13182 124 RREMEEMLERLQKLEARLKK 143 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555543
No 294
>PRK03918 chromosome segregation protein; Provisional
Probab=28.85 E-value=2.8e+02 Score=26.98 Aligned_cols=34 Identities=24% Similarity=0.345 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 113 KQELEALRQRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 113 ~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
.+++++++.+++.+..+++.++.+++++++.+..
T Consensus 618 ~~~l~~~~~~l~~~~~~i~~l~~~i~~l~~~~~~ 651 (880)
T PRK03918 618 EKELKKLEEELDKAFEELAETEKRLEELRKELEE 651 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555554443
No 295
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=28.85 E-value=1.5e+02 Score=18.97 Aligned_cols=33 Identities=9% Similarity=0.228 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 030907 73 AVQAAVDLIGEIFIFTVAGAAVIFEVQRSARSE 105 (169)
Q Consensus 73 Ave~GAe~lgE~fIF~Va~~li~~E~~Rs~~ke 105 (169)
.+.--|+..|=++.+.+-+|+++|-|++++++.
T Consensus 6 ~lr~~a~~~~l~~~~~~Figiv~wa~~p~~k~~ 38 (48)
T cd01324 6 TLRGLADSWGLLYLALFFLGVVVWAFRPGRKKA 38 (48)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchh
Confidence 455567777777777888999999999887764
No 296
>PF09812 MRP-L28: Mitochondrial ribosomal protein L28; InterPro: IPR019192 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Members of this family are components of the mitochondrial large ribosomal subunit. Mature mitochondrial ribosomes consist of a small (37S) and a large (54S) subunit. The 37S subunit contains at least 33 different proteins and 1 molecule of RNA (15S). The 54S subunit contains at least 45 different proteins and 1 molecule of RNA (21S) [, ].
Probab=28.80 E-value=1.9e+02 Score=23.05 Aligned_cols=44 Identities=32% Similarity=0.378 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccc
Q 030907 115 ELEALRQRDEGLARELELLRQKIEELEQLAKQRGLSGIFSFKHAT 159 (169)
Q Consensus 115 ~le~L~~~~~~l~~eve~l~~~i~ele~~~~~~~~~~~~~~~~~~ 159 (169)
+...|+.+.+.+...+++|+.-=.+|-++..... .|+|.+....
T Consensus 90 ~~~~l~~~~~sq~~AleeLr~~S~eLY~aA~~~d-~~~fP~e~~~ 133 (157)
T PF09812_consen 90 REQQLRRQYESQQKALEELRLESPELYQAAIQPD-PGLFPLEMRG 133 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHhccC-CCCCCeeecC
Confidence 3346777788888888888877777777776655 4577666553
No 297
>PF11101 DUF2884: Protein of unknown function (DUF2884); InterPro: IPR021307 Some members in this bacterial family of proteins are annotated as YggN which currently has no known function.
Probab=28.71 E-value=3.5e+02 Score=22.59 Aligned_cols=44 Identities=14% Similarity=0.265 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhhHHhcCCCCCCcCC--CC-HHHHHHHHHHHHHHHHH
Q 030907 43 QANHRITTRMQRRIYGHATGGEIRP--LN-EEKAVQAAVDLIGEIFI 86 (169)
Q Consensus 43 q~~h~~e~rl~~~~lg~~~~~~i~p--L~-Ee~Ave~GAe~lgE~fI 86 (169)
+....+..+++.+++..+..+.++| ++ .+..++--.+--+|-++
T Consensus 99 ~l~~~l~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~e~e~~~e~lv 145 (229)
T PF11101_consen 99 QLMDQLKQQVDRRFYQRGDGFVLHAQAFSQLDEFFDQEFEQAIEQLV 145 (229)
T ss_pred HHHHHHHHHHHHHheeCCCcEEEcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555663333344443 44 34444444444555554
No 298
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=28.60 E-value=2.8e+02 Score=24.32 Aligned_cols=25 Identities=48% Similarity=0.490 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 119 LRQRDEGLARELELLRQKIEELEQL 143 (169)
Q Consensus 119 L~~~~~~l~~eve~l~~~i~ele~~ 143 (169)
+.+++++++.+.+.+.+++.+++..
T Consensus 62 l~~eL~~LE~e~~~l~~el~~le~e 86 (314)
T PF04111_consen 62 LLQELEELEKEREELDQELEELEEE 86 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444433
No 299
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=28.58 E-value=1.6e+02 Score=20.15 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 030907 116 LEALRQRDEGLARELELLR 134 (169)
Q Consensus 116 le~L~~~~~~l~~eve~l~ 134 (169)
.+-|+++|.+|+..+..++
T Consensus 16 VevLK~~I~eL~~~n~~Le 34 (59)
T PF01166_consen 16 VEVLKEQIAELEERNSQLE 34 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455544444444333
No 300
>cd04775 HTH_Cfa-like Helix-Turn-Helix DNA binding domain of Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulators; the HTH domain of Cfa, a cyclopropane fatty acid synthase, and other related methyltransferases, as well as, the N-terminal domain of a conserved, uncharacterized ~172 a.a. protein. Based on sequence similarity of the N-terminal domain, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimil
Probab=28.43 E-value=1.4e+02 Score=21.51 Aligned_cols=27 Identities=33% Similarity=0.478 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 118 ALRQRDEGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 118 ~L~~~~~~l~~eve~l~~~i~ele~~~ 144 (169)
-+..+.++++.+++.++...+.|+++|
T Consensus 75 ~l~~~~~~l~~~i~~l~~~~~~l~~~l 101 (102)
T cd04775 75 ILEERLQSLNREIQRLRQQQQVLAAIL 101 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555666666666666666666654
No 301
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=28.35 E-value=1.6e+02 Score=21.35 Aligned_cols=31 Identities=19% Similarity=0.289 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 111 IRKQELEALRQRDEGLARELELLRQKIEELE 141 (169)
Q Consensus 111 ~~~~~le~L~~~~~~l~~eve~l~~~i~ele 141 (169)
..+++++..+.+++..+..+..++.+...++
T Consensus 5 ~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l~ 35 (86)
T PF12958_consen 5 ELQAEIEKAEKKLEQAEHKIKQLENRKKKLE 35 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666667777766665
No 302
>PHA03385 IX capsid protein IX,hexon associated protein IX; Provisional
Probab=28.30 E-value=1.4e+02 Score=23.48 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 111 IRKQELEALRQRDEGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 111 ~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~ 144 (169)
..++.|..+-.+++.|.++++++.+++.+|.+..
T Consensus 97 ~~ed~L~~llaqLealsqqL~~ls~qv~~L~~~~ 130 (135)
T PHA03385 97 LAEDKLLVLLAQLEALSQQLQELSQQVAQLREQT 130 (135)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Confidence 3344455566666777777777777777776543
No 303
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=28.27 E-value=2.8e+02 Score=21.44 Aligned_cols=49 Identities=14% Similarity=0.095 Sum_probs=35.4
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 96 FEVQRSARSEARKEEIRKQELEALRQRDEGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 96 ~E~~Rs~~ke~~Kee~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~ 144 (169)
++....++|.-.|......+++++...+...+.-+++.-.-++.|++.|
T Consensus 69 ~~~~~erqk~~~k~ae~L~kv~els~~L~~~~~lL~~~v~~ie~LN~~L 117 (131)
T PF10158_consen 69 LQQMVERQKRFAKFAEQLEKVNELSQQLSRCQSLLNQTVPSIETLNEIL 117 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3444455555566666777788888888888888888888888888777
No 304
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=28.26 E-value=2.2e+02 Score=24.42 Aligned_cols=32 Identities=28% Similarity=0.423 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 113 KQELEALRQRDEGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 113 ~~~le~L~~~~~~l~~eve~l~~~i~ele~~~ 144 (169)
+.++++++.++..++.++.+.+.|++..+..+
T Consensus 51 ~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 51 EIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555
No 305
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.23 E-value=1.2e+02 Score=27.05 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 118 ALRQRDEGLARELELLRQKIEELEQ 142 (169)
Q Consensus 118 ~L~~~~~~l~~eve~l~~~i~ele~ 142 (169)
+|+++.+||.+.-++|+.|=+++..
T Consensus 68 eL~~rqeEL~Rke~ELdRREr~~a~ 92 (313)
T KOG3088|consen 68 ELLKKQEELRRKEQELDRRERALAR 92 (313)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 4555566666666666666666665
No 306
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=28.11 E-value=1.9e+02 Score=20.87 Aligned_cols=33 Identities=24% Similarity=0.290 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 110 EIRKQELEALRQRDEGLARELELLRQKIEELEQ 142 (169)
Q Consensus 110 e~~~~~le~L~~~~~~l~~eve~l~~~i~ele~ 142 (169)
+....+++.-+.++.+++..+..|..+..|+|.
T Consensus 4 eKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN 36 (83)
T PF14193_consen 4 EKIRAEIEKTKEKIAELQARLKELEAQKTEAEN 36 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566667777777887777777777776654
No 307
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=27.81 E-value=1.7e+02 Score=19.73 Aligned_cols=28 Identities=29% Similarity=0.349 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 118 ALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 118 ~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
.++++++.|+.+++.-+++...-|...+
T Consensus 29 tiEqRLa~LE~rL~~ae~ra~~ae~~~~ 56 (60)
T PF11471_consen 29 TIEQRLAALEQRLQAAEQRAQAAEARAK 56 (60)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888888888888877777766554
No 308
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=27.63 E-value=1e+02 Score=29.52 Aligned_cols=49 Identities=14% Similarity=0.165 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCccccccc
Q 030907 110 EIRKQELEALRQRDEGLARELELLRQKIEELEQLAKQ--RGLSGIFSFKHA 158 (169)
Q Consensus 110 e~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~--~~~~~~~~~~~~ 158 (169)
..++++|...-+++-.|+.+...|+.+|+.++..+.. -|++..|+.+.+
T Consensus 45 ~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~ 95 (546)
T KOG0977|consen 45 QELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELA 95 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHH
Confidence 3668888888889999999999999999999998854 455677777666
No 309
>PF06212 GRIM-19: GRIM-19 protein; InterPro: IPR009346 This family consists of several eukaryotic gene associated with retinoic-interferon-induced mortality 19 (GRIM-19) proteins. GRIM-19, was reported to encode a small protein primarily distributed in the nucleus and was able to promote cell death induced by IFN-beta and RA. A bovine homologue of GRIM-19 was co-purified with mitochondrial NADH:ubiquinone oxidoreductase (complex I) in bovine heart. Therefore, its exact cellular localisation and function are unclear. It has now been discovered that GRIM-19 is a specific interacting protein which negatively regulates Stat3 activity [].
Probab=27.61 E-value=2.9e+02 Score=21.41 Aligned_cols=19 Identities=5% Similarity=0.221 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 030907 85 FIFTVAGAAVIFEVQRSAR 103 (169)
Q Consensus 85 fIF~Va~~li~~E~~Rs~~ 103 (169)
.+|++.+++..|-+++-..
T Consensus 33 ~~~~~~~~~~~~G~y~~~~ 51 (130)
T PF06212_consen 33 TMFAGGAGIMAYGFYKVGQ 51 (130)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333
No 310
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=27.59 E-value=1.7e+02 Score=21.20 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 111 IRKQELEALRQRDEGLARELELLRQKIEEL 140 (169)
Q Consensus 111 ~~~~~le~L~~~~~~l~~eve~l~~~i~el 140 (169)
.....|++|...++.|+.....+..++++|
T Consensus 30 ~ins~LD~Lns~LD~LE~rnD~l~~~L~~L 59 (83)
T PF03670_consen 30 AINSMLDQLNSCLDHLEQRNDHLHAQLQEL 59 (83)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 345556666666666666666666666555
No 311
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=27.54 E-value=86 Score=29.58 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 123 DEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 123 ~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
++.|+.++..|+.|+.||+..+.+
T Consensus 27 i~~L~~ql~aLq~~v~eL~~~laa 50 (514)
T PF11336_consen 27 IKALQAQLQALQDQVNELRAKLAA 50 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445556666666666777676655
No 312
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=27.42 E-value=3.1e+02 Score=21.53 Aligned_cols=10 Identities=20% Similarity=0.052 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 030907 115 ELEALRQRDE 124 (169)
Q Consensus 115 ~le~L~~~~~ 124 (169)
.+..+..++.
T Consensus 41 ~l~~~~~qL~ 50 (135)
T TIGR03495 41 ELASKANQLI 50 (135)
T ss_pred HHHHHHhHHH
Confidence 3333333333
No 313
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=27.41 E-value=1.3e+02 Score=22.05 Aligned_cols=26 Identities=15% Similarity=0.115 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 113 KQELEALRQRDEGLARELELLRQKIE 138 (169)
Q Consensus 113 ~~~le~L~~~~~~l~~eve~l~~~i~ 138 (169)
+++++.+++++.+++.....+...+.
T Consensus 85 ~~~~~~l~~~i~~l~~~~~~l~~~~~ 110 (116)
T cd04769 85 EDKKQEIRAQITELQQLLARLDAFEA 110 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444433333
No 314
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=27.26 E-value=4.4e+02 Score=23.57 Aligned_cols=28 Identities=11% Similarity=0.125 Sum_probs=19.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 66 RPLNEEKAVQAAVDLIGEIFIFTVAGAA 93 (169)
Q Consensus 66 ~pL~Ee~Ave~GAe~lgE~fIF~Va~~l 93 (169)
...+...++....+++..++...+++.+
T Consensus 168 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 195 (347)
T TIGR00328 168 SLYSLVQAITNFLDIAKSLLILVLLLLL 195 (347)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467788888888888887765444433
No 315
>PF07271 Cytadhesin_P30: Cytadhesin P30/P32; InterPro: IPR009896 This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence [].; GO: 0007157 heterophilic cell-cell adhesion, 0009405 pathogenesis, 0016021 integral to membrane
Probab=27.26 E-value=2.2e+02 Score=25.15 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 030907 74 VQAAVDLIGEIFIFTVAGAAVIF 96 (169)
Q Consensus 74 ve~GAe~lgE~fIF~Va~~li~~ 96 (169)
+-.++-|+.=++|.|+|.|+-+|
T Consensus 73 v~~~~G~~~v~liLgl~ig~p~~ 95 (279)
T PF07271_consen 73 VGGSAGLLAVALILGLAIGIPIY 95 (279)
T ss_pred ccchhhHHHHHHHHHHhhcchhh
Confidence 56778888888899999888554
No 316
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=27.12 E-value=2.1e+02 Score=19.45 Aligned_cols=26 Identities=19% Similarity=0.521 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 117 EALRQRDEGLARELELLRQKIEELEQ 142 (169)
Q Consensus 117 e~L~~~~~~l~~eve~l~~~i~ele~ 142 (169)
..++.....++.+++.+..+|++++.
T Consensus 23 ~~lE~~~~~~e~~i~~~~~~l~~I~~ 48 (71)
T PF10779_consen 23 DKLEKRDAANEKDIKNLNKQLEKIKS 48 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444443
No 317
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=27.12 E-value=4.3e+02 Score=23.18 Aligned_cols=35 Identities=23% Similarity=0.217 Sum_probs=25.1
Q ss_pred ccHHHHHHHHHHHhhhHHHHHHHHHHhhChhhhHh
Q 030907 3 LPVVKLGTLALKTLSKPVAAKLKQQAAIHPRFRQS 37 (169)
Q Consensus 3 fPl~KL~~L~iR~iSKPian~iK~~A~~~p~fR~~ 37 (169)
.|++.=+.-++++|.|.=-+-||.+++=.+..+..
T Consensus 88 ~P~L~~A~~al~~l~k~di~Eiks~~~PP~~V~~V 122 (344)
T PF12777_consen 88 EPALEEAQEALKSLDKSDISEIKSYANPPEAVKLV 122 (344)
T ss_dssp HHHHHHHHHHHHCS-HHHHHHHHHSSS--HHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHhhCCCcHHHHHH
Confidence 57788888888999998888888888766666543
No 318
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=27.06 E-value=3e+02 Score=21.33 Aligned_cols=30 Identities=27% Similarity=0.344 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 115 ELEALRQRDEGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 115 ~le~L~~~~~~l~~eve~l~~~i~ele~~~ 144 (169)
+++.++.++.+++.+++....+.+.+...+
T Consensus 146 ki~~l~~~i~~~e~~~~~~~~~~~~i~~~~ 175 (218)
T cd07596 146 KVEELEEELEEAESALEEARKRYEEISERL 175 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555544443
No 319
>PF05833 FbpA: Fibronectin-binding protein A N-terminus (FbpA); InterPro: IPR008616 This family consists of the N-terminal region of the prokaryotic fibronectin-binding protein, the C-terminal region is IPR008532 from INTERPRO. Fibronectin binding is considered to be an important virulence factor in streptococcal infections. Fibronectin is a dimeric glycoprotein that is present in a soluble form in plasma and extracellular fluids; it is also present in a fibrillar form on cell surfaces. Both the soluble and cellular forms of fibronectin may be incorporated into the extracellular tissue matrix. While fibronectin has critical roles in eukaryotic cellular processes, such as adhesion, migration and differentiation, it is also a substrate for the attachment of bacteria. The binding of pathogenic Streptococcus pyogenes and Staphylococcus aureus to epithelial cells via fibronectin facilitates their internalisation and systemic spread within the host [].; PDB: 3DOA_A 2ZBK_F 2HKJ_A 1Z5B_A 1Z5C_B 1MX0_F 1Z5A_A 1MU5_A 1Z59_A.
Probab=26.96 E-value=21 Score=32.10 Aligned_cols=37 Identities=24% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 98 VQRSARSEARKEEIRKQELEALRQRDEGLARELELLR 134 (169)
Q Consensus 98 ~~Rs~~ke~~Kee~~~~~le~L~~~~~~l~~eve~l~ 134 (169)
|++.++|-.++.+....++++++.+++.++...+.++
T Consensus 385 yf~k~kK~k~k~~~~~~~i~~~~~el~~l~~~~~~l~ 421 (455)
T PF05833_consen 385 YFKKYKKLKRKIEKLEERIEEAEKELEYLESKLEQLE 421 (455)
T ss_dssp -------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666677667777667777777777776666665555
No 320
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=26.96 E-value=2.3e+02 Score=19.91 Aligned_cols=37 Identities=24% Similarity=0.292 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030907 111 IRKQELEALRQRDEGLARELELLRQKIEELEQLAKQR 147 (169)
Q Consensus 111 ~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~~ 147 (169)
........|..+.+.++..+..+..-++..++++..-
T Consensus 69 ~~~~~~~~l~~q~~~l~~~l~~l~~~~~~~e~~l~~~ 105 (127)
T smart00502 69 QKENKLKVLEQQLESLTQKQEKLSHAINFTEEALNSG 105 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3344555677778888888888888888888888653
No 321
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=26.84 E-value=2.2e+02 Score=23.96 Aligned_cols=27 Identities=30% Similarity=0.315 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 118 ALRQRDEGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 118 ~L~~~~~~l~~eve~l~~~i~ele~~~ 144 (169)
+|+.++..++.|+..|++-+..-|+++
T Consensus 48 elr~EL~kvEeEI~TLrqVLaAKerH~ 74 (208)
T KOG4010|consen 48 ELRTELAKVEEEIVTLRQVLAAKERHA 74 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555566666666555555554
No 322
>PRK10722 hypothetical protein; Provisional
Probab=26.77 E-value=2.1e+02 Score=24.77 Aligned_cols=41 Identities=22% Similarity=0.204 Sum_probs=24.3
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 100 RSARSEARKEEIRKQELEALRQRDEGLARELELLRQKIEEL 140 (169)
Q Consensus 100 Rs~~ke~~Kee~~~~~le~L~~~~~~l~~eve~l~~~i~el 140 (169)
|=...+..+-+...++...|+.+++...+.+|.|..==+.|
T Consensus 169 rLQq~sD~qlD~lrqq~~~Lq~~L~~t~rKLEnLTdIERqL 209 (247)
T PRK10722 169 KLQQSSDSELDALRQQQQRLQYQLELTTRKLENLTDIERQL 209 (247)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333445555556666667777777777777666544444
No 323
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=26.68 E-value=2.8e+02 Score=20.83 Aligned_cols=19 Identities=37% Similarity=0.513 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 030907 128 RELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 128 ~eve~l~~~i~ele~~~~~ 146 (169)
.+++.|..+|++|++.+..
T Consensus 96 ~ev~~L~~RI~~Le~~l~~ 114 (118)
T TIGR01837 96 EEIEALSAKIEQLAVQVEE 114 (118)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5677777777777776654
No 324
>PRK08156 type III secretion system protein SpaS; Validated
Probab=26.43 E-value=4.7e+02 Score=23.68 Aligned_cols=26 Identities=15% Similarity=0.004 Sum_probs=17.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 67 PLNEEKAVQAAVDLIGEIFIFTVAGA 92 (169)
Q Consensus 67 pL~Ee~Ave~GAe~lgE~fIF~Va~~ 92 (169)
..+...++....+++..+++..+++.
T Consensus 164 ~~~~~~~~~~~~~~~~~l~~~~~~~~ 189 (361)
T PRK08156 164 NGNIVGLIVIWRELLVKLVLTFLACA 189 (361)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777778888877776544333
No 325
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=26.24 E-value=92 Score=23.75 Aligned_cols=14 Identities=21% Similarity=0.513 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q 030907 131 ELLRQKIEELEQLA 144 (169)
Q Consensus 131 e~l~~~i~ele~~~ 144 (169)
..++.+|++|++.+
T Consensus 86 ~~l~~rvd~Lerqv 99 (108)
T COG3937 86 DELTERVDALERQV 99 (108)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 326
>PRK10864 putative methyltransferase; Provisional
Probab=26.23 E-value=50 Score=29.67 Aligned_cols=19 Identities=21% Similarity=0.169 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 030907 84 IFIFTVAGAAVIFEVQRSA 102 (169)
Q Consensus 84 ~fIF~Va~~li~~E~~Rs~ 102 (169)
.+=-+||+++++||++|+.
T Consensus 326 SLNVSvAaaI~LyE~~Rq~ 344 (346)
T PRK10864 326 SLNVSVATGVLLAEWWRQN 344 (346)
T ss_pred CeEHHHHHHHHHHHHHHhh
Confidence 3335899999999999975
No 327
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=26.19 E-value=2.7e+02 Score=21.40 Aligned_cols=35 Identities=26% Similarity=0.261 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 112 RKQELEALRQRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 112 ~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
.+.++..|+-+...++.-.++|..+|+-||-+++.
T Consensus 30 mkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkq 64 (134)
T PF08232_consen 30 MKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQ 64 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666677999999999999863
No 328
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=26.13 E-value=2.1e+02 Score=26.46 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 115 ELEALRQRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 115 ~le~L~~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
++.++..++.+++.++++++.++.++++.+..
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 170 (525)
T TIGR02231 139 EIERLLTEDREAERRIRELEKQLSELQNELNA 170 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444455555555555666666666555544
No 329
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=26.05 E-value=2e+02 Score=21.28 Aligned_cols=17 Identities=24% Similarity=-0.042 Sum_probs=9.2
Q ss_pred hHhhhchhHHHHHHHHH
Q 030907 35 RQSIVGIAQANHRITTR 51 (169)
Q Consensus 35 R~~~i~~gq~~h~~e~r 51 (169)
+.+-|..++.|+|....
T Consensus 37 ~e~gIs~~tl~~W~r~y 53 (121)
T PRK09413 37 RQHGVAASQLFLWRKQY 53 (121)
T ss_pred HHHCcCHHHHHHHHHHH
Confidence 44445566666665443
No 330
>PF05164 ZapA: Cell division protein ZapA; InterPro: IPR007838 This entry a structural domain found in the cell division protein ZapA, as well as in related proteins. This domain has a core structure consisting of two layers alpha/beta, and has a long C-terminal helix that forms dimeric parallel and tetrameric antiparallel coiled coils []. ZapA interacts with FtsZ, where FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. ZapA drives the polymerisation and filament bundling of FtsZ, thereby contributing to the spatio-temporal tuning of the Z-ring.; PDB: 1T3U_B 1W2E_B 3HNW_A.
Probab=25.83 E-value=2.2e+02 Score=19.33 Aligned_cols=15 Identities=20% Similarity=0.153 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHhhhh
Q 030907 90 AGAAVIFEVQRSARS 104 (169)
Q Consensus 90 a~~li~~E~~Rs~~k 104 (169)
++.-+..|+.+..+.
T Consensus 53 aaLnla~e~~~~~~~ 67 (89)
T PF05164_consen 53 AALNLADELLKLKRE 67 (89)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444455666654433
No 331
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=25.81 E-value=4.7e+02 Score=23.20 Aligned_cols=39 Identities=23% Similarity=0.377 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 107 RKEEIRKQELEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 107 ~Kee~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
++-+....++.++...++++..+....+..|++++..+.
T Consensus 207 keade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik 245 (294)
T COG1340 207 KEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIK 245 (294)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445555555555665566666666666655444
No 332
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=25.73 E-value=1.7e+02 Score=20.84 Aligned_cols=27 Identities=33% Similarity=0.450 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 117 EALRQRDEGLARELELLRQKIEELEQL 143 (169)
Q Consensus 117 e~L~~~~~~l~~eve~l~~~i~ele~~ 143 (169)
+.+..+..+|..++..++.-++.|+++
T Consensus 76 ~~l~~~~~~l~~~i~~l~~~~~~l~~~ 102 (103)
T cd01106 76 EALREQKELLEEKKERLDKLIKTIDRT 102 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555666666666666666666554
No 333
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=25.69 E-value=1.6e+02 Score=22.67 Aligned_cols=31 Identities=29% Similarity=0.238 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 030907 122 RDEGLARELELLRQKIEELEQLAKQRGLSGI 152 (169)
Q Consensus 122 ~~~~l~~eve~l~~~i~ele~~~~~~~~~~~ 152 (169)
.+|+|..++..|+-+-..|.+.++.-+.|+.
T Consensus 4 t~EeLaaeL~kLqmENk~LKkkl~~~~~p~~ 34 (118)
T PF05812_consen 4 TMEELAAELQKLQMENKALKKKLRQSVGPGP 34 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT---S
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHccCCCCC
Confidence 3567777777777777777788876554433
No 334
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=25.62 E-value=1.7e+02 Score=21.22 Aligned_cols=25 Identities=36% Similarity=0.413 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 117 EALRQRDEGLARELELLRQKIEELE 141 (169)
Q Consensus 117 e~L~~~~~~l~~eve~l~~~i~ele 141 (169)
+.|+.+++.++.+...+..+|.+..
T Consensus 83 ~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 83 EQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455555666666666666655543
No 335
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=25.56 E-value=2.3e+02 Score=26.37 Aligned_cols=45 Identities=22% Similarity=0.258 Sum_probs=24.0
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 95 IFEVQRSARSEARKEEIRKQELEALRQRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 95 ~~E~~Rs~~ke~~Kee~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
..+|.|..+++..+-.+ ++.+...|+...+.|..++++|+..+..
T Consensus 278 s~dYIr~Lqq~~q~~~E-------~~~rqk~le~~n~~L~~rieeLk~~~~~ 322 (411)
T KOG1318|consen 278 SCDYIRELQQTLQRARE-------LENRQKKLESTNQELALRIEELKSEAGR 322 (411)
T ss_pred HHHHHHHHHHHHHHHHH-------HHhhhhHHHhHHHHHHHHHHHHHHHHHH
Confidence 35788877765433222 2222333345555666666666666654
No 336
>PRK11181 23S rRNA (guanosine-2'-O-)-methyltransferase; Provisional
Probab=25.46 E-value=55 Score=27.46 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 030907 83 EIFIFTVAGAAVIFEVQRSA 102 (169)
Q Consensus 83 E~fIF~Va~~li~~E~~Rs~ 102 (169)
|.+=-++++++++||++|++
T Consensus 223 ~SLNvsvAaaI~lye~~rqr 242 (244)
T PRK11181 223 SSLNVSVATGICLFEAVRQR 242 (244)
T ss_pred ceeeHHHHHHHHHHHHHHhh
Confidence 34446889999999999874
No 337
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=25.41 E-value=1.4e+02 Score=21.09 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 119 LRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 119 L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
+..-+++++.+++.++.+++...+++.
T Consensus 50 i~~s~eeq~~~i~~Le~~i~~k~~~L~ 76 (83)
T PF07544_consen 50 IDRSVEEQEEEIEELEEQIRKKREVLQ 76 (83)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455566666666666665555554
No 338
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=25.40 E-value=4.8e+02 Score=23.13 Aligned_cols=36 Identities=19% Similarity=0.452 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 030907 113 KQELEALRQRDEGLARELELLRQKIEELEQLAKQRG 148 (169)
Q Consensus 113 ~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~~~ 148 (169)
.+.+.+.++.++++..+++.++..|+-.+..+...|
T Consensus 80 ~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~ 115 (301)
T PF06120_consen 80 EESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKG 115 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 345567777778888888888888877776665544
No 339
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=25.38 E-value=3.2e+02 Score=21.12 Aligned_cols=8 Identities=25% Similarity=0.148 Sum_probs=3.1
Q ss_pred HHHHHhhh
Q 030907 96 FEVQRSAR 103 (169)
Q Consensus 96 ~E~~Rs~~ 103 (169)
+|...+.+
T Consensus 56 s~~l~~tK 63 (126)
T PF07889_consen 56 SESLSSTK 63 (126)
T ss_pred HHHHHHHH
Confidence 34333333
No 340
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=25.35 E-value=2.1e+02 Score=22.72 Aligned_cols=18 Identities=6% Similarity=0.076 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 030907 129 ELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 129 eve~l~~~i~ele~~~~~ 146 (169)
+...++.+|++|++.+..
T Consensus 65 ~~~~~e~rI~~L~~~L~~ 82 (160)
T PRK06342 65 QMARPLRDLRYLAARRRT 82 (160)
T ss_pred HHHHHHHHHHHHHHHHcc
Confidence 344566778888888764
No 341
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=25.25 E-value=3.8e+02 Score=25.48 Aligned_cols=35 Identities=26% Similarity=0.490 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccc
Q 030907 118 ALRQRDEGLARELELLRQKIEELEQLAKQRGLSGIFS 154 (169)
Q Consensus 118 ~L~~~~~~l~~eve~l~~~i~ele~~~~~~~~~~~~~ 154 (169)
++.++.++++.++..+..++++|.+.+.++ |++.-
T Consensus 438 ~l~~~q~~le~qI~~Le~kl~~l~~~l~s~--~~~~~ 472 (489)
T KOG3684|consen 438 ELHSRQEELEKQIDTLESKLEALTASLSSL--PGLLA 472 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhhc
Confidence 455566777777777777777777777654 56553
No 342
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.18 E-value=5.3e+02 Score=23.58 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 030907 119 LRQRDEGLARELELLRQKIEEL 140 (169)
Q Consensus 119 L~~~~~~l~~eve~l~~~i~el 140 (169)
|+..++.|+.+...++..++-|
T Consensus 251 L~~~~etLEqq~~~L~~niDIL 272 (365)
T KOG2391|consen 251 LVAMKETLEQQLQSLQKNIDIL 272 (365)
T ss_pred HHHHHHHHHHHHHHHHhhhHHH
Confidence 3334444444444444444444
No 343
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=25.18 E-value=1.4e+02 Score=28.53 Aligned_cols=31 Identities=35% Similarity=0.471 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 115 ELEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 115 ~le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
+++++.++++++.++.++++++++++++...
T Consensus 94 ~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~ 124 (646)
T PRK05771 94 ELEKIEKEIKELEEEISELENEIKELEQEIE 124 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444433
No 344
>PF10280 Med11: Mediator complex protein ; InterPro: IPR019404 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med11 of the Mediator complex []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3R84_S 3RJ1_O.
Probab=25.16 E-value=81 Score=23.67 Aligned_cols=53 Identities=13% Similarity=0.238 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhChhhhHhhhchhHHHHHHHHHHhhHHhc
Q 030907 5 VVKLGTLALKTLSKPVAAKLKQQAAIHPRFRQSIVGIAQANHRITTRMQRRIYG 58 (169)
Q Consensus 5 l~KL~~L~iR~iSKPian~iK~~A~~~p~fR~~~i~~gq~~h~~e~rl~~~~lg 58 (169)
+.+.++.++..+|+|-... .......+.|..-+-.+-+..|.++++|++-+..
T Consensus 18 lL~~A~~ai~~Ls~~~~~~-~~~~~~k~~f~~~~~~f~~~L~~V~~~Lr~qI~~ 70 (117)
T PF10280_consen 18 LLQHAGQAIQELSNPKSPD-QDPESSKEAFESATSEFFSTLSSVEVELRRQIKY 70 (117)
T ss_dssp HHHHHHHHHHHHHHHHTT----TGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCC-CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777788888776543 2222234667777777889999999999987653
No 345
>PF15058 Speriolin_N: Speriolin N terminus
Probab=25.00 E-value=1.2e+02 Score=25.42 Aligned_cols=24 Identities=38% Similarity=0.475 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 117 EALRQRDEGLARELELLRQKIEEL 140 (169)
Q Consensus 117 e~L~~~~~~l~~eve~l~~~i~el 140 (169)
|-++.+++.|.+|.++|+.+++-|
T Consensus 8 eGlrhqierLv~ENeeLKKlVrLi 31 (200)
T PF15058_consen 8 EGLRHQIERLVRENEELKKLVRLI 31 (200)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHH
Confidence 445666777777777777766643
No 346
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=24.80 E-value=4.6e+02 Score=22.75 Aligned_cols=32 Identities=28% Similarity=0.494 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 113 KQELEALRQRDEGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 113 ~~~le~L~~~~~~l~~eve~l~~~i~ele~~~ 144 (169)
..++...+..+++++.++..|++.+++|....
T Consensus 192 ~kei~~~re~i~el~e~I~~L~~eV~~L~~~~ 223 (258)
T PF15397_consen 192 QKEIVQFREEIDELEEEIPQLRAEVEQLQAQA 223 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444555556666666666666666665444
No 347
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=24.71 E-value=86 Score=24.19 Aligned_cols=10 Identities=10% Similarity=0.325 Sum_probs=3.7
Q ss_pred HHHHHHhhhh
Q 030907 95 IFEVQRSARS 104 (169)
Q Consensus 95 ~~E~~Rs~~k 104 (169)
+|=+.|.++|
T Consensus 85 ~y~irR~~Kk 94 (122)
T PF01102_consen 85 SYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHS--
T ss_pred HHHHHHHhcc
Confidence 3444444444
No 348
>COG2165 PulG Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=24.52 E-value=2.7e+02 Score=19.86 Aligned_cols=27 Identities=19% Similarity=0.203 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 030907 79 DLIGEIFIFTVAGAAVIFEVQRSARSE 105 (169)
Q Consensus 79 e~lgE~fIF~Va~~li~~E~~Rs~~ke 105 (169)
|+|.=+.|+||++++++.-+..+..+.
T Consensus 14 ElLVvl~Iigil~~~~~p~~~~~~~~~ 40 (149)
T COG2165 14 ELLVVLAIIGILAALALPSLQGSIDKA 40 (149)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 344445567888888877777666654
No 349
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=24.52 E-value=2.6e+02 Score=19.69 Aligned_cols=28 Identities=36% Similarity=0.431 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 115 ELEALRQRDEGLARELELLRQKIEELEQ 142 (169)
Q Consensus 115 ~le~L~~~~~~l~~eve~l~~~i~ele~ 142 (169)
+++.++.+.+.++.+.+.|+.++..+..
T Consensus 43 ~l~~l~~~~~~l~~e~~~L~lE~~~l~~ 70 (97)
T PF04999_consen 43 ELQQLEKEIDQLQEENERLRLEIATLSS 70 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3667777777777777777766665544
No 350
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.31 E-value=1.6e+02 Score=26.23 Aligned_cols=28 Identities=25% Similarity=0.363 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 107 RKEEIRKQELEALRQRDEGLARELELLR 134 (169)
Q Consensus 107 ~Kee~~~~~le~L~~~~~~l~~eve~l~ 134 (169)
+|+++.+.+-++|+++-+||.+.-..++
T Consensus 64 ~kq~eL~~rqeEL~Rke~ELdRREr~~a 91 (313)
T KOG3088|consen 64 KKQAELLKKQEELRRKEQELDRRERALA 91 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 3555555555666666666655544443
No 351
>PF00816 Histone_HNS: H-NS histone family Partial NMR structure.; InterPro: IPR001801 The histone-like nucleoid-structuring (H-NS) protein belongs to a family of bacterial proteins that play a role in the formation of nucleoid structure and affect gene expression under certain conditions [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2LEV_A 1HNS_A 1LR1_B 1HNR_A 1NI8_A 1OV9_A 2JR1_A 3NR7_A 2L93_A 2L92_A.
Probab=24.30 E-value=2.3e+02 Score=19.88 Aligned_cols=14 Identities=29% Similarity=0.553 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHhcC
Q 030907 135 QKIEELEQLAKQRG 148 (169)
Q Consensus 135 ~~i~ele~~~~~~~ 148 (169)
.-+.++.+++..-|
T Consensus 24 ~~~~~i~~~~~~~G 37 (93)
T PF00816_consen 24 EAIAEIRELMAEYG 37 (93)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhC
Confidence 34555555555544
No 352
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=24.14 E-value=94 Score=24.18 Aligned_cols=20 Identities=20% Similarity=0.478 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 030907 127 ARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 127 ~~eve~l~~~i~ele~~~~~ 146 (169)
..+|+.|..+|++|+..+..
T Consensus 108 ~~dv~~L~~rId~L~~~v~~ 127 (132)
T PF05597_consen 108 RKDVEALSARIDQLTAQVER 127 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888877754
No 353
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=24.03 E-value=1.1e+02 Score=22.98 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 030907 121 QRDEGLARELELLRQKIEELEQ 142 (169)
Q Consensus 121 ~~~~~l~~eve~l~~~i~ele~ 142 (169)
++++.|...|..|.+++++|+.
T Consensus 96 ~ev~~L~~RI~~Le~~l~~l~~ 117 (118)
T TIGR01837 96 EEIEALSAKIEQLAVQVEELRR 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4577888888888888887763
No 354
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.96 E-value=2.6e+02 Score=25.50 Aligned_cols=33 Identities=30% Similarity=0.308 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 113 KQELEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 113 ~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
..+.++|+++.++|..-.+++++.++.||+.+.
T Consensus 231 ~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~ 263 (365)
T KOG2391|consen 231 QAEQESLKRTEEELNIGKQKLVAMKETLEQQLQ 263 (365)
T ss_pred HHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555555443
No 355
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=23.87 E-value=4.6e+02 Score=22.49 Aligned_cols=30 Identities=30% Similarity=0.401 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 115 ELEALRQRDEGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 115 ~le~L~~~~~~l~~eve~l~~~i~ele~~~ 144 (169)
.+.+++...+++..++..++.+|+++++..
T Consensus 46 ~~~~~~~e~e~le~qv~~~e~ei~~~r~r~ 75 (239)
T COG1579 46 ALEALEIELEDLENQVSQLESEIQEIRERI 75 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555554444
No 356
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=23.83 E-value=2.5e+02 Score=23.18 Aligned_cols=24 Identities=33% Similarity=0.357 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCC
Q 030907 127 ARELELLRQKIEELEQLAKQRGLS 150 (169)
Q Consensus 127 ~~eve~l~~~i~ele~~~~~~~~~ 150 (169)
+.+-+..++.|+..+.+..+++..
T Consensus 109 q~EEEKRrqkie~we~~q~Gks~k 132 (190)
T PF06936_consen 109 QEEEEKRRQKIEMWESMQEGKSYK 132 (190)
T ss_dssp HHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334455556677777777666543
No 357
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=23.82 E-value=2.8e+02 Score=24.86 Aligned_cols=34 Identities=21% Similarity=0.471 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 113 KQELEALRQRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 113 ~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
.++++++.+.+.+++..+..+.++++++|...+.
T Consensus 157 Ed~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRR 190 (370)
T PF02994_consen 157 EDRIEEIEQAIKELEKRIKKLEDKLDDLENRSRR 190 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 3344444455555555566666666666666654
No 358
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=23.74 E-value=3.1e+02 Score=20.39 Aligned_cols=27 Identities=7% Similarity=-0.114 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 030907 78 VDLIGEIFIFTVAGAAVIFEVQRSARS 104 (169)
Q Consensus 78 Ae~lgE~fIF~Va~~li~~E~~Rs~~k 104 (169)
.+++..++.|.|...++-.=.|+--.+
T Consensus 6 ~t~~~~~i~flil~~ll~~~l~~pi~~ 32 (140)
T PRK07353 6 ATLPLMAVQFVLLTFILNALFYKPVGK 32 (140)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666766666665555554433
No 359
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.74 E-value=7.2e+02 Score=24.62 Aligned_cols=41 Identities=22% Similarity=0.229 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------cCCCCccccccc
Q 030907 118 ALRQRDEGLARELELLRQKIEELEQLAKQ------------RGLSGIFSFKHA 158 (169)
Q Consensus 118 ~L~~~~~~l~~eve~l~~~i~ele~~~~~------------~~~~~~~~~~~~ 158 (169)
+|++.+.+.+.+++.+...+.++|+.|.+ .|+.|-.||.++
T Consensus 456 ~LE~e~kn~~~ev~kls~ei~~ie~~l~~~~~~vke~nq~l~~g~gra~~~L~ 508 (758)
T COG4694 456 NLEKEIKNNQEEVKKLSNEIKEIEKFLVSIKPIVKEINQTLLKGYGRANFSLA 508 (758)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHhhcchheeeee
Confidence 45556666666777777777888887753 344666777777
No 360
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=23.66 E-value=3.4e+02 Score=20.73 Aligned_cols=19 Identities=26% Similarity=0.604 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 030907 127 ARELELLRQKIEELEQLAK 145 (169)
Q Consensus 127 ~~eve~l~~~i~ele~~~~ 145 (169)
..++++|+.+|..+..+.+
T Consensus 95 ~E~veEL~~Dv~DlK~myr 113 (120)
T PF12325_consen 95 SEEVEELRADVQDLKEMYR 113 (120)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666654
No 361
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=23.65 E-value=2.2e+02 Score=27.37 Aligned_cols=34 Identities=29% Similarity=0.487 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 030907 116 LEALRQRDEGLARELELLRQKIEELEQLAKQRGL 149 (169)
Q Consensus 116 le~L~~~~~~l~~eve~l~~~i~ele~~~~~~~~ 149 (169)
++.|+..++.-+.+++.|++++++|...++..|.
T Consensus 332 l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~I 365 (622)
T COG5185 332 LEKLKSEIELKEEEIKALQSNIDELHKQLRKQGI 365 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCC
Confidence 4456667778888999999999999988888763
No 362
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=23.64 E-value=1.7e+02 Score=19.48 Aligned_cols=24 Identities=42% Similarity=0.501 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 122 RDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 122 ~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
.+..|+.+++.++..|..++..|.
T Consensus 5 E~~rL~Kel~kl~~~i~~~~~kL~ 28 (66)
T PF10458_consen 5 EIERLEKELEKLEKEIERLEKKLS 28 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334444444444444444444443
No 363
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=23.63 E-value=7e+02 Score=24.41 Aligned_cols=39 Identities=10% Similarity=0.138 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 030907 66 RPLNEEKAVQAAVDLIGEIFIFTVAGAAVIFEVQRSARS 104 (169)
Q Consensus 66 ~pL~Ee~Ave~GAe~lgE~fIF~Va~~li~~E~~Rs~~k 104 (169)
.|+.+.-....|.-.+..+.-|...+.++.+=.+|..+-
T Consensus 284 ~p~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~Rr~~~ 322 (603)
T COG4191 284 SPTAVLLRSAVRTARLAAILTLALLALLLALWLRRRRRA 322 (603)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666677777777666655555555545544443
No 364
>PF07996 T4SS: Type IV secretion system proteins; InterPro: IPR014158 This entry contains VirB5, a protein that is involved in the type IV DNA secretion systems typified by the Agrobacterium Ti plasmid vir system where it interacts with several other proteins essential for proper pilus formation []. VirB5 is homologous to the IncN (N-type) conjugation system protein TraC [] as well as the P-type protein TrbJ and the F-type protein TraE [].; PDB: 1R8I_A.
Probab=23.58 E-value=1.8e+02 Score=22.98 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCccccc
Q 030907 121 QRDEGLARELELLRQKIEELEQLAKQ-RGLSGIFSFK 156 (169)
Q Consensus 121 ~~~~~l~~eve~l~~~i~ele~~~~~-~~~~~~~~~~ 156 (169)
+++.++..+++.++.+|+++++.+.+ .|..|+.++-
T Consensus 19 ~q~~~~~~q~~q~~~Ql~~~k~q~~s~tG~r~~~~~~ 55 (195)
T PF07996_consen 19 QQLAQWKQQLEQLKQQLQQAKQQYNSLTGNRGLGNLL 55 (195)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--GGGSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHh
Confidence 44555666666777777777777765 4444554443
No 365
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=23.55 E-value=1.9e+02 Score=20.68 Aligned_cols=26 Identities=12% Similarity=0.336 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 118 ALRQRDEGLARELELLRQKIEELEQL 143 (169)
Q Consensus 118 ~L~~~~~~l~~eve~l~~~i~ele~~ 143 (169)
+|.++...|..+++.+.+.+.+..+-
T Consensus 4 ei~eEn~~Lk~eiqkle~ELq~~~~~ 29 (76)
T PF07334_consen 4 EIQEENARLKEEIQKLEAELQQNKRE 29 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444455555555555555544443
No 366
>PF11464 Rbsn: Rabenosyn Rab binding domain; InterPro: IPR021565 Rabenosyn-5 (Rbsn) is a multivalent effector with interacts with the Rab family.Rsbn contains distinct Rab4 and Rab5 binding sites within residues 264-500 and 627-784 respectively []. Rab proteins are GTPases involved in the regulation of all stages of membrane trafficking []. ; PDB: 1Z0K_B 1YZM_A 1Z0J_B.
Probab=23.55 E-value=1.3e+02 Score=19.13 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 030907 111 IRKQELEALRQRDEGLARELELL 133 (169)
Q Consensus 111 ~~~~~le~L~~~~~~l~~eve~l 133 (169)
.+-++.+.|+.-+.+|+.++..+
T Consensus 19 ~r~dEV~~L~~NL~EL~~e~~~q 41 (42)
T PF11464_consen 19 RRFDEVATLEENLRELQDEIDEQ 41 (42)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHhc
Confidence 34445555666666666665544
No 367
>PRK14011 prefoldin subunit alpha; Provisional
Probab=23.39 E-value=3.1e+02 Score=21.57 Aligned_cols=13 Identities=15% Similarity=0.082 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHH
Q 030907 72 KAVQAAVDLIGEI 84 (169)
Q Consensus 72 ~Ave~GAe~lgE~ 84 (169)
--|+.|++++.|-
T Consensus 72 VlVdIGtGy~VEk 84 (144)
T PRK14011 72 AILGVGSDIYLEK 84 (144)
T ss_pred EEEEccCCeEEEe
Confidence 3566777766554
No 368
>KOG3491 consensus Predicted membrane protein [Function unknown]
Probab=23.22 E-value=1.1e+02 Score=21.10 Aligned_cols=24 Identities=33% Similarity=0.697 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 030907 79 DLIGEIFIFTVAGAAVIFEVQRSAR 103 (169)
Q Consensus 79 e~lgE~fIF~Va~~li~~E~~Rs~~ 103 (169)
-.|.-+|||.|.++.+ |++.|+.+
T Consensus 39 PwLlglFvFVVcGSa~-FqIIr~~~ 62 (65)
T KOG3491|consen 39 PWLLGLFVFVVCGSAL-FQIIRTAT 62 (65)
T ss_pred hHHHHHHHHHhhcHHH-HHHHHHHh
Confidence 3566689998887766 78887754
No 369
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=23.11 E-value=2e+02 Score=23.78 Aligned_cols=15 Identities=27% Similarity=0.439 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHH
Q 030907 72 KAVQAAVDLIGEIFI 86 (169)
Q Consensus 72 ~Ave~GAe~lgE~fI 86 (169)
+|++.-.+-+.++|.
T Consensus 143 ~Al~~np~~V~~lF~ 157 (239)
T PF07195_consen 143 KALAENPDAVQALFA 157 (239)
T ss_pred HHHhhCHHHHHHHHc
Confidence 466656666777764
No 370
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=23.09 E-value=5e+02 Score=25.05 Aligned_cols=25 Identities=16% Similarity=0.069 Sum_probs=17.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Q 030907 66 RPLNEEKAVQAAVDLIGEIFIFTVA 90 (169)
Q Consensus 66 ~pL~Ee~Ave~GAe~lgE~fIF~Va 90 (169)
.-.+...++....+++..++...++
T Consensus 431 ~~~~~~~~~~~~~~~~~~l~~~~~~ 455 (609)
T PRK12772 431 GNLYLPYIITELKSLVISIFFRITL 455 (609)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888888888887754443
No 371
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=23.08 E-value=5.7e+02 Score=23.30 Aligned_cols=22 Identities=23% Similarity=0.036 Sum_probs=14.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q 030907 68 LNEEKAVQAAVDLIGEIFIFTV 89 (169)
Q Consensus 68 L~Ee~Ave~GAe~lgE~fIF~V 89 (169)
.+...++....+++..+++..+
T Consensus 177 ~~~~~~~~~~~~~~~~l~~~~~ 198 (386)
T PRK12468 177 APPVAALGDALHLIIFCGLVVV 198 (386)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777665444
No 372
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=23.07 E-value=4.5e+02 Score=21.96 Aligned_cols=28 Identities=21% Similarity=0.389 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 118 ALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 118 ~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
.|+.+....+..+..++.+|+.|+....
T Consensus 158 aL~~e~~aaqaQL~~lQ~qv~~Lq~q~~ 185 (192)
T PF11180_consen 158 ALEAERRAAQAQLRQLQRQVRQLQRQAN 185 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555555566666666666665543
No 373
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=23.06 E-value=3.6e+02 Score=20.90 Aligned_cols=30 Identities=23% Similarity=0.304 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 115 ELEALRQRDEGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 115 ~le~L~~~~~~l~~eve~l~~~i~ele~~~ 144 (169)
+...++.+|..|...+..+..+++.++..+
T Consensus 29 ~~~~~E~EI~sL~~K~~~lE~eld~~~~~l 58 (143)
T PF12718_consen 29 ENEQKEQEITSLQKKNQQLEEELDKLEEQL 58 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555555555555444
No 374
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=22.79 E-value=1.7e+02 Score=22.36 Aligned_cols=37 Identities=19% Similarity=0.427 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 030907 70 EEKAVQAAVDLIGEIFIFTVAGAAVIFEVQRSARSEA 106 (169)
Q Consensus 70 Ee~Ave~GAe~lgE~fIF~Va~~li~~E~~Rs~~ke~ 106 (169)
+-+..-.-+.|++|++.|++...-+++++.+.--...
T Consensus 92 ~~~~~~~~i~fl~eL~~~~~i~~~~i~~~l~~ll~~~ 128 (200)
T smart00543 92 DKQRRLGLVRFLGELYNFQVLTSKIILELLKELLNDL 128 (200)
T ss_pred hhhhHHhHHHHHHHHHHcccCcHHHHHHHHHHHHhcc
Confidence 3455667899999999999988888888887766543
No 375
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=22.77 E-value=1.1e+02 Score=21.64 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 030907 126 LARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 126 l~~eve~l~~~i~ele~~~~~ 146 (169)
+.+.++++..+|++|++-++.
T Consensus 50 i~~s~eeq~~~i~~Le~~i~~ 70 (83)
T PF07544_consen 50 IDRSVEEQEEEIEELEEQIRK 70 (83)
T ss_pred ccCCHHHHHHHHHHHHHHHHH
Confidence 566677777777777766643
No 376
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=22.77 E-value=2.7e+02 Score=19.35 Aligned_cols=34 Identities=21% Similarity=0.423 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 113 KQELEALRQRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 113 ~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
..++..++.++..+...+..+..++++++.++..
T Consensus 4 ~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~e 37 (106)
T PF01920_consen 4 QNKFQELNQQLQQLEQQIQQLERQLRELELTLEE 37 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777777777777777777777654
No 377
>PRK01203 prefoldin subunit alpha; Provisional
Probab=22.65 E-value=3.4e+02 Score=21.16 Aligned_cols=33 Identities=12% Similarity=0.231 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 114 QELEALRQRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 114 ~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
.+++-++.+++.|..+++.++.-+.++.....+
T Consensus 7 ~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~ 39 (130)
T PRK01203 7 AQLNYIESLISSVDSQIDSLNKTLSEVQQTISF 39 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666555555554433
No 378
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=22.65 E-value=2.4e+02 Score=27.57 Aligned_cols=8 Identities=13% Similarity=0.023 Sum_probs=5.6
Q ss_pred hhhhHhhh
Q 030907 32 PRFRQSIV 39 (169)
Q Consensus 32 p~fR~~~i 39 (169)
..||+.|.
T Consensus 25 ~~lrrlC~ 32 (632)
T PF14817_consen 25 DYLRRLCR 32 (632)
T ss_pred HHHHHHhc
Confidence 35688885
No 379
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=22.62 E-value=3.9e+02 Score=21.04 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 118 ALRQRDEGLARELELLRQKIEELE 141 (169)
Q Consensus 118 ~L~~~~~~l~~eve~l~~~i~ele 141 (169)
.++++++.++.|++.+.+.+..-.
T Consensus 70 Kl~Rk~~kl~~el~~~~~~~~~~~ 93 (161)
T PF04420_consen 70 KLNRKLDKLEEELEKLNKSLSSEK 93 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377888888888888887776543
No 380
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=22.56 E-value=4.5e+02 Score=24.15 Aligned_cols=57 Identities=19% Similarity=0.278 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 84 IFIFTVAGAAVIFEVQRSARSEAR------------KEEIRKQELEALRQRDEGLARELELLRQKIEEL 140 (169)
Q Consensus 84 ~fIF~Va~~li~~E~~Rs~~ke~~------------Kee~~~~~le~L~~~~~~l~~eve~l~~~i~el 140 (169)
.|||++..++-++-..+-+.+.-+ |--+.++-+..+++.+++-+.+.+.++.+-+.|
T Consensus 43 ~f~f~~iss~gwff~i~~re~qlk~aa~~llq~kirk~~e~~eglr~i~es~~e~q~e~~qL~~qnqkL 111 (401)
T PF06785_consen 43 YFVFSIISSLGWFFAIGRREKQLKTAAGQLLQTKIRKITEKDEGLRKIRESVEERQQESEQLQSQNQKL 111 (401)
T ss_pred eeehHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 578888777766665554444321 111223334445555555555555555554443
No 381
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=22.42 E-value=3.8e+02 Score=20.95 Aligned_cols=26 Identities=23% Similarity=0.452 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 113 KQELEALRQRDEGLARELELLRQKIE 138 (169)
Q Consensus 113 ~~~le~L~~~~~~l~~eve~l~~~i~ 138 (169)
++.+..+.+++++++..+.++...+.
T Consensus 87 ~~~l~~l~~el~~l~~~~~~~~~~l~ 112 (191)
T PF04156_consen 87 QQQLQQLQEELDQLQERIQELESELE 112 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443333
No 382
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=22.14 E-value=2.4e+02 Score=24.28 Aligned_cols=72 Identities=13% Similarity=0.117 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 71 EKAVQAAVDLIGEI--------FIFTVAGAAVIFEVQRSARSEARKEEIRKQELEALRQRDEGLARELELLRQKIEELEQ 142 (169)
Q Consensus 71 e~Ave~GAe~lgE~--------fIF~Va~~li~~E~~Rs~~ke~~Kee~~~~~le~L~~~~~~l~~eve~l~~~i~ele~ 142 (169)
.-|..+|+++..|. ++-++--.|=+|-.-. -..|=....++-..+...++.|+.+|.+|+.+++.+..
T Consensus 140 avA~vlG~~m~~e~~~d~dvevLL~~ae~L~~vYP~~g----a~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~ 215 (259)
T PF08657_consen 140 AVALVLGGVMHEEIVEDVDVEVLLRGAEKLCNVYPLPG----AREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNR 215 (259)
T ss_pred HHHHhccCcccccccccCCHHHHHHHHHHHHHhCCChH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35777888777554 2223333333333331 12233466777888999999999999999999888866
Q ss_pred HHHh
Q 030907 143 LAKQ 146 (169)
Q Consensus 143 ~~~~ 146 (169)
-...
T Consensus 216 ~~~~ 219 (259)
T PF08657_consen 216 SSSD 219 (259)
T ss_pred Cccc
Confidence 5543
No 383
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=22.06 E-value=4.2e+02 Score=21.31 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 112 RKQELEALRQRDEGLARELELLRQKI 137 (169)
Q Consensus 112 ~~~~le~L~~~~~~l~~eve~l~~~i 137 (169)
....+..++.++.++..+.+.+..+.
T Consensus 117 l~~~l~~l~~kl~e~k~k~~~l~ar~ 142 (221)
T PF04012_consen 117 LKEQLEELEAKLEELKSKREELKARE 142 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444443
No 384
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=22.01 E-value=2.5e+02 Score=21.91 Aligned_cols=27 Identities=41% Similarity=0.538 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 116 LEALRQRDEGLARELELLRQKIEELEQ 142 (169)
Q Consensus 116 le~L~~~~~~l~~eve~l~~~i~ele~ 142 (169)
.++|...+++|..+++.+..++..|.+
T Consensus 111 ~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 111 NEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356899999999999999999998887
No 385
>PF06624 RAMP4: Ribosome associated membrane protein RAMP4; InterPro: IPR010580 This entry contains Serp1/Ramp4, which has been shown to interacts with target proteins during their translocation into the lumen of the endoplasmic reticulum. It has also been shown to protect unfolded target proteins against degradation during ER stress. It may facilitate glycosylation of target proteins after termination of ER stress and may modulate the use of N-glycosylation sites on target proteins [, ].
Probab=21.87 E-value=34 Score=23.52 Aligned_cols=20 Identities=45% Similarity=0.909 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 030907 83 EIFIFTVAGAAVIFEVQRSAR 103 (169)
Q Consensus 83 E~fIF~Va~~li~~E~~Rs~~ 103 (169)
=+|+|.|.||.+ +|+.|+.+
T Consensus 43 ~l~iFVV~Gs~i-fqiir~i~ 62 (63)
T PF06624_consen 43 GLFIFVVCGSAI-FQIIRSIQ 62 (63)
T ss_pred hhhheeeEcHHH-HHHHHHHh
Confidence 388998888866 78888764
No 386
>PF12097 DUF3573: Protein of unknown function (DUF3573); InterPro: IPR021956 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 372 to 530 amino acids in length.
Probab=21.83 E-value=1.9e+02 Score=26.48 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 111 IRKQELEALRQRDEGLARELELLRQK 136 (169)
Q Consensus 111 ~~~~~le~L~~~~~~l~~eve~l~~~ 136 (169)
.-++.+.+|++++..|+.|+..++.+
T Consensus 39 ~~~~~i~~Lq~QI~~Lq~ei~~l~~~ 64 (383)
T PF12097_consen 39 NDQQEISELQKQIQQLQAEINQLEEQ 64 (383)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567788999999999999998887
No 387
>PRK15396 murein lipoprotein; Provisional
Probab=21.80 E-value=3e+02 Score=19.56 Aligned_cols=32 Identities=9% Similarity=0.314 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 109 EEIRKQELEALRQRDEGLARELELLRQKIEEL 140 (169)
Q Consensus 109 ee~~~~~le~L~~~~~~l~~eve~l~~~i~el 140 (169)
-+....+.+.|..+++.+..++..++..+..-
T Consensus 27 vd~LssqV~~L~~kvdql~~dv~~~~~~~~~a 58 (78)
T PRK15396 27 IDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAA 58 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666667777777776666666544
No 388
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=21.79 E-value=2e+02 Score=26.17 Aligned_cols=16 Identities=25% Similarity=0.223 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHhhhh
Q 030907 89 VAGAAVIFEVQRSARS 104 (169)
Q Consensus 89 Va~~li~~E~~Rs~~k 104 (169)
|=.|.+.-+|.|....
T Consensus 55 VDpgav~qq~~r~q~Q 70 (387)
T COG3064 55 VDPGAVVQQYGRIQSQ 70 (387)
T ss_pred eCcHHHHHHHHHHHHH
Confidence 3446666777775544
No 389
>PHA00728 hypothetical protein
Probab=21.77 E-value=1.3e+02 Score=23.62 Aligned_cols=25 Identities=40% Similarity=0.505 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 122 RDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 122 ~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
.+++|.++.++++.++.+||....+
T Consensus 6 eveql~keneelkkkla~leal~nn 30 (151)
T PHA00728 6 EVEQLKKENEELKKKLAELEALMNN 30 (151)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHcC
Confidence 4556666666777777777766654
No 390
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=21.71 E-value=2.8e+02 Score=19.07 Aligned_cols=34 Identities=24% Similarity=0.279 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 030907 115 ELEALRQRDEGLARELELLRQKIEELEQLAKQRG 148 (169)
Q Consensus 115 ~le~L~~~~~~l~~eve~l~~~i~ele~~~~~~~ 148 (169)
.+.......+.....++.+...+.++...+.+.+
T Consensus 6 ~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ 39 (123)
T PF02050_consen 6 ELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQ 39 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3444555555555555566655555544444433
No 391
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.65 E-value=2.4e+02 Score=20.12 Aligned_cols=33 Identities=24% Similarity=0.475 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 111 IRKQELEALRQRDEGLARELELLRQKIEELEQL 143 (169)
Q Consensus 111 ~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~ 143 (169)
..+.++++|+.+.+.|..+++..+...++|++-
T Consensus 22 LLQmEieELKEknn~l~~e~q~~q~~reaL~~e 54 (79)
T COG3074 22 LLQMEIEELKEKNNSLSQEVQNAQHQREALERE 54 (79)
T ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHH
Confidence 345677778888888888887777777776543
No 392
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=21.63 E-value=4.3e+02 Score=21.26 Aligned_cols=28 Identities=39% Similarity=0.526 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 114 QELEALRQRDEGLARELELLRQKIEELE 141 (169)
Q Consensus 114 ~~le~L~~~~~~l~~eve~l~~~i~ele 141 (169)
+.++.+...++.|...+..++.+|.+++
T Consensus 105 ~~~~~~~~~~~~l~~~l~~l~~kl~e~k 132 (221)
T PF04012_consen 105 QQLDQAEAQVEKLKEQLEELEAKLEELK 132 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444445555555554443
No 393
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=21.48 E-value=3.1e+02 Score=19.49 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 121 QRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 121 ~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
....+|...++.++..|++|++...
T Consensus 39 ~~~~eL~~~l~~ie~~L~DL~~aV~ 63 (97)
T PF09177_consen 39 WLKRELRNALQSIEWDLEDLEEAVR 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666666666666666664
No 394
>COG3132 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.46 E-value=1.4e+02 Score=25.14 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 030907 119 LRQRDEGLARELELLRQKIEELE 141 (169)
Q Consensus 119 L~~~~~~l~~eve~l~~~i~ele 141 (169)
|+.+++.|+.++-.++++++.+.
T Consensus 190 learv~aLe~eva~L~~rld~ll 212 (215)
T COG3132 190 LEARVEALEQEVAELRARLDSLL 212 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 66777777777777777777654
No 395
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=21.39 E-value=2e+02 Score=20.85 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 030907 124 EGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 124 ~~l~~eve~l~~~i~ele~~~~~ 146 (169)
..++.|...+..+++..|..|+.
T Consensus 39 ~~lE~E~~~l~~~l~~~E~eL~~ 61 (85)
T PF15188_consen 39 RSLEKELNELKEKLENNEKELKL 61 (85)
T ss_pred HHHHHHHHHHHHHhhccHHHHHH
Confidence 45566666666666666665543
No 396
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=21.34 E-value=3.5e+02 Score=22.70 Aligned_cols=39 Identities=28% Similarity=0.263 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 030907 110 EIRKQELEALRQRDEGLARELELLRQKIEELEQLAKQRG 148 (169)
Q Consensus 110 e~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~~~ 148 (169)
++..+=|+.+.+..+.+..+++++++++++|.+-+....
T Consensus 26 eEVdeFLD~V~~dye~~l~e~~~l~~~i~~L~~~l~~~~ 64 (212)
T COG3599 26 EEVDEFLDDVIDDYEQLLDENEDLEDEIDELKEELKEAA 64 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555667777778888888888888888888886644
No 397
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=21.28 E-value=3.8e+02 Score=23.89 Aligned_cols=31 Identities=26% Similarity=0.351 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 115 ELEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 115 ~le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
++++|+.+...+..+++..+..++.|...|+
T Consensus 109 ~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~ 139 (355)
T PF09766_consen 109 QLKELEQRKKKLQQENKKKKKFLDSLPPQLK 139 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3444555555555555555555555544444
No 398
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=21.23 E-value=5.1e+02 Score=21.96 Aligned_cols=31 Identities=23% Similarity=0.364 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 115 ELEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 115 ~le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
++..+..++..+..++..++.+++...+.+.
T Consensus 136 ~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~ 166 (301)
T PF14362_consen 136 QIARLDAEIAALQAEIDQLEKEIDRAQQEAQ 166 (301)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555556666666666655555553
No 399
>KOG3756 consensus Pinin (desmosome-associated protein) [Cytoskeleton]
Probab=21.19 E-value=6.2e+02 Score=22.91 Aligned_cols=32 Identities=25% Similarity=0.322 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 109 EEIRKQELEALRQRDEGLARELELLRQKIEEL 140 (169)
Q Consensus 109 ee~~~~~le~L~~~~~~l~~eve~l~~~i~el 140 (169)
|+...++++.|+.+..++-.+....+..++.+
T Consensus 177 Eeq~~eE~e~l~~qe~~l~~~rr~r~~ElR~l 208 (340)
T KOG3756|consen 177 EEQAEEEREQLEKQERELLEERRARQTELRLL 208 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666665555544444444444433
No 400
>KOG2577 consensus Transcription factor E2F/dimerization partner (TDP) [Transcription]
Probab=21.05 E-value=2.3e+02 Score=25.85 Aligned_cols=33 Identities=27% Similarity=0.317 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 113 KQELEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 113 ~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
.++.+.|+.+++.|..+-++|++.|+.+.+-++
T Consensus 143 ~e~~~~l~~e~~~L~~~E~~LD~~i~~~q~~L~ 175 (354)
T KOG2577|consen 143 PERLNGLEAEVEDLSQEEDDLDQLIRDCQQNLR 175 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 401
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=20.99 E-value=4.2e+02 Score=21.56 Aligned_cols=35 Identities=20% Similarity=0.211 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 110 EIRKQELEALRQRDEGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 110 e~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~ 144 (169)
++.+.+|..+++.|..|..-+-.-..+..+|.+.|
T Consensus 32 eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 32 EELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34556777777777777766666666666665543
No 402
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=20.95 E-value=1.4e+02 Score=19.02 Aligned_cols=27 Identities=19% Similarity=0.160 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 111 IRKQELEALRQRDEGLARELELLRQKI 137 (169)
Q Consensus 111 ~~~~~le~L~~~~~~l~~eve~l~~~i 137 (169)
.+..++.+++.++.+|..+...++.++
T Consensus 18 ~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 18 ALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ------------HHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 344445555666666666665555544
No 403
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=20.90 E-value=2e+02 Score=21.85 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 117 EALRQRDEGLARELELLRQKIEELE 141 (169)
Q Consensus 117 e~L~~~~~~l~~eve~l~~~i~ele 141 (169)
..|-.++-+|+..++++.+|++...
T Consensus 59 aRlItQVLELQnTLdDLSqRVdsVK 83 (120)
T KOG3650|consen 59 ARLITQVLELQNTLDDLSQRVDSVK 83 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777776553
No 404
>PLN02678 seryl-tRNA synthetase
Probab=20.83 E-value=3.4e+02 Score=25.27 Aligned_cols=41 Identities=17% Similarity=0.235 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccc
Q 030907 117 EALRQRDEGLARELELLRQKIEELEQLAKQRGLSGIFSFKHA 158 (169)
Q Consensus 117 e~L~~~~~~l~~eve~l~~~i~ele~~~~~~~~~~~~~~~~~ 158 (169)
+++..+..+|..++..++.+++++++.+... +..+-|.-|.
T Consensus 74 ~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~-~~~iPNi~~~ 114 (448)
T PLN02678 74 TELIAETKELKKEITEKEAEVQEAKAALDAK-LKTIGNLVHD 114 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCCCCc
Confidence 3455556666677777777777777777653 3444555555
No 405
>PRK08808 general secretion pathway protein J; Validated
Probab=20.80 E-value=5e+02 Score=21.62 Aligned_cols=26 Identities=4% Similarity=0.049 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 030907 79 DLIGEIFIFTVAGAAVIFEVQRSARS 104 (169)
Q Consensus 79 e~lgE~fIF~Va~~li~~E~~Rs~~k 104 (169)
|+|.=+.|++|++++.+.-|.-...+
T Consensus 13 Ellia~ai~~il~~~a~~s~~~~~~~ 38 (211)
T PRK08808 13 EVLLATVLLVGGLALAFATLRSASAV 38 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444455666666655444444433
No 406
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=20.74 E-value=4.4e+02 Score=21.02 Aligned_cols=27 Identities=30% Similarity=0.368 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 119 LRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 119 L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
++....+|...++.++...+.|+..++
T Consensus 87 ~~~e~k~L~~~v~~Le~e~r~L~~~~~ 113 (158)
T PF09744_consen 87 WRQERKDLQSQVEQLEEENRQLELKLK 113 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444455555555555555554443
No 407
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=20.62 E-value=2.8e+02 Score=24.15 Aligned_cols=33 Identities=36% Similarity=0.453 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 110 EIRKQELEALRQRDEGLARELELLRQKIEELEQ 142 (169)
Q Consensus 110 e~~~~~le~L~~~~~~l~~eve~l~~~i~ele~ 142 (169)
+..++++++++.+.+.++.+++.++.+|+.+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (364)
T TIGR01242 9 RKLEDEKRSLEKEKIRLERELERLRSEIERLRS 41 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344566677888888888999999988877643
No 408
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=20.61 E-value=2.7e+02 Score=18.56 Aligned_cols=17 Identities=6% Similarity=0.266 Sum_probs=10.2
Q ss_pred CHHHHHHHHHHHHHHHH
Q 030907 69 NEEKAVQAAVDLIGEIF 85 (169)
Q Consensus 69 ~Ee~Ave~GAe~lgE~f 85 (169)
.-|..+-.||+=+-.++
T Consensus 11 ~~E~ki~~Gae~m~~~~ 27 (70)
T PF02185_consen 11 DKELKIKEGAENMLQAY 27 (70)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34566666776665554
No 409
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=20.37 E-value=2.6e+02 Score=26.73 Aligned_cols=34 Identities=32% Similarity=0.429 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 110 EIRKQELEALRQRDEGLARELELLRQKIEELEQL 143 (169)
Q Consensus 110 e~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~ 143 (169)
+...+++.++.++.++|+.+++.++.++++++..
T Consensus 96 ~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l~~~ 129 (646)
T PRK05771 96 EKIEKEIKELEEEISELENEIKELEQEIERLEPW 129 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3456677888899999999999999999988754
No 410
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=20.31 E-value=2.8e+02 Score=18.51 Aligned_cols=24 Identities=13% Similarity=0.282 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHH--HHhhhhHHHHH
Q 030907 86 IFTVAGAAVIFEV--QRSARSEARKE 109 (169)
Q Consensus 86 IF~Va~~li~~E~--~Rs~~ke~~Ke 109 (169)
||.|.+|+++.-| .++++.|.+.+
T Consensus 5 vY~vi~gI~~S~ym~v~t~~eE~~~d 30 (52)
T PF14147_consen 5 VYFVIAGIIFSGYMAVKTAKEEREID 30 (52)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 6777777775544 44554444433
No 411
>TIGR00186 rRNA_methyl_3 rRNA methylase, putative, group 3. this is part of the trmH (spoU) family of rRNA methylases
Probab=20.27 E-value=74 Score=26.50 Aligned_cols=19 Identities=26% Similarity=0.569 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 030907 83 EIFIFTVAGAAVIFEVQRS 101 (169)
Q Consensus 83 E~fIF~Va~~li~~E~~Rs 101 (169)
|.+=-++++++++||++|+
T Consensus 218 ~SLNVsvAaaI~lye~~rq 236 (237)
T TIGR00186 218 DSLNVSVAAGILLFEIKRQ 236 (237)
T ss_pred CcchHHHHHHHHHHHHHhc
Confidence 4444678999999999986
No 412
>PRK01203 prefoldin subunit alpha; Provisional
Probab=20.15 E-value=2.5e+02 Score=21.88 Aligned_cols=31 Identities=16% Similarity=0.238 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 112 RKQELEALRQRDEGLARELELLRQKIEELEQ 142 (169)
Q Consensus 112 ~~~~le~L~~~~~~l~~eve~l~~~i~ele~ 142 (169)
.+++.+.|+++++.|.....+.+.-++.|+.
T Consensus 12 ~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~ 42 (130)
T PRK01203 12 IESLISSVDSQIDSLNKTLSEVQQTISFLSD 42 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3556667777777777777777776666666
No 413
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=20.13 E-value=3.3e+02 Score=19.38 Aligned_cols=20 Identities=10% Similarity=0.310 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHhhhhHH
Q 030907 87 FTVAGAAVIFEVQRSARSEA 106 (169)
Q Consensus 87 F~Va~~li~~E~~Rs~~ke~ 106 (169)
|.++++++-|-..+.-++++
T Consensus 33 lfiisa~lSwkLaK~ie~~e 52 (74)
T PF15086_consen 33 LFIISAVLSWKLAKAIEKEE 52 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544433
No 414
>PF15361 RIC3: Resistance to inhibitors of cholinesterase homologue 3
Probab=20.12 E-value=2.3e+02 Score=22.39 Aligned_cols=27 Identities=30% Similarity=0.396 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 107 RKEEIRKQELEALRQRDEGLARELELL 133 (169)
Q Consensus 107 ~Kee~~~~~le~L~~~~~~l~~eve~l 133 (169)
.+++..+.+|++|++++.+-|+.++.+
T Consensus 124 ~~~~~~~~eL~qLq~rL~qTE~~m~ki 150 (152)
T PF15361_consen 124 TKRKITDYELAQLQERLAQTERAMEKI 150 (152)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 555567888999999988777766643
No 415
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=20.04 E-value=1.8e+02 Score=26.12 Aligned_cols=30 Identities=33% Similarity=0.584 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 113 KQELEALRQRDEGLARELELLRQKIEELEQ 142 (169)
Q Consensus 113 ~~~le~L~~~~~~l~~eve~l~~~i~ele~ 142 (169)
+.+++++.+++.+|++++..|+.++.+++.
T Consensus 288 RsElDe~~krL~ELrR~vr~L~k~l~~l~~ 317 (320)
T TIGR01834 288 RSELDEAHQRIQQLRREVKSLKKRLGDLEA 317 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 557788888888888888888888888764
Done!