Query 030907
Match_columns 169
No_of_seqs 118 out of 226
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 09:49:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030907.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030907hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hjb_A Ccaat/enhancer binding 93.1 0.5 1.7E-05 33.5 7.7 47 100-146 29-75 (87)
2 1ci6_A Transcription factor AT 92.4 0.92 3.1E-05 29.9 7.8 46 100-145 16-61 (63)
3 1t2k_D Cyclic-AMP-dependent tr 92.2 0.76 2.6E-05 29.9 7.2 34 111-144 26-59 (61)
4 1gu4_A CAAT/enhancer binding p 91.2 0.62 2.1E-05 32.3 6.2 32 114-145 36-67 (78)
5 2wt7_A Proto-oncogene protein 90.3 2 6.9E-05 28.1 7.8 28 115-142 24-51 (63)
6 2oxj_A Hybrid alpha/beta pepti 89.8 0.5 1.7E-05 28.0 3.9 31 115-145 2-32 (34)
7 1go4_E MAD1 (mitotic arrest de 89.6 1.1 3.7E-05 32.6 6.6 43 114-156 12-54 (100)
8 1jnm_A Proto-oncogene C-JUN; B 88.3 1 3.6E-05 29.3 5.2 33 113-145 21-53 (62)
9 3c3f_A Alpha/beta peptide with 88.2 0.78 2.7E-05 27.1 4.0 31 115-145 2-32 (34)
10 1gmj_A ATPase inhibitor; coile 88.1 2.7 9.3E-05 29.6 7.6 46 97-142 32-79 (84)
11 1dh3_A Transcription factor CR 86.9 1.7 5.7E-05 28.0 5.5 32 113-144 21-52 (55)
12 3m48_A General control protein 86.3 0.74 2.5E-05 27.1 3.1 30 116-145 2-31 (33)
13 2hy6_A General control protein 86.1 1.3 4.5E-05 26.2 4.2 32 115-146 2-33 (34)
14 2wq1_A General control protein 85.9 1.1 3.9E-05 26.3 3.8 30 116-145 2-31 (33)
15 1kd8_B GABH BLL, GCN4 acid bas 85.5 1.9 6.3E-05 25.8 4.7 31 115-145 2-32 (36)
16 1kd8_A GABH AIV, GCN4 acid bas 85.4 1.2 4.3E-05 26.6 3.9 30 116-145 3-32 (36)
17 3c3g_A Alpha/beta peptide with 85.3 1.4 4.8E-05 25.9 4.0 30 116-145 2-31 (33)
18 1hjb_A Ccaat/enhancer binding 85.0 6 0.00021 27.8 8.1 37 110-146 32-68 (87)
19 2r2v_A GCN4 leucine zipper; co 84.6 2.1 7.1E-05 25.3 4.6 31 115-145 2-32 (34)
20 2dgc_A Protein (GCN4); basic d 84.4 3.8 0.00013 27.0 6.4 33 113-145 29-61 (63)
21 2bni_A General control protein 83.7 1.3 4.6E-05 26.2 3.4 31 115-145 2-32 (34)
22 2akf_A Coronin-1A; coiled coil 82.2 3.6 0.00012 23.6 4.8 28 119-146 4-31 (32)
23 2wt7_A Proto-oncogene protein 81.9 8.4 0.00029 25.0 7.5 39 108-146 24-62 (63)
24 2yy0_A C-MYC-binding protein; 81.4 3.8 0.00013 26.2 5.3 28 117-144 22-49 (53)
25 1gu4_A CAAT/enhancer binding p 80.6 12 0.00039 25.8 8.1 49 98-146 27-75 (78)
26 1uo4_A General control protein 80.3 2 6.7E-05 25.4 3.3 30 116-145 3-32 (34)
27 2yy0_A C-MYC-binding protein; 80.2 3.4 0.00012 26.4 4.8 30 110-139 22-51 (53)
28 3eff_K Voltage-gated potassium 78.9 15 0.0005 26.7 8.7 23 123-145 113-135 (139)
29 3rvy_A ION transport protein; 78.7 1.1 3.6E-05 36.4 2.5 60 81-146 222-281 (285)
30 2l5g_B Putative uncharacterize 78.2 6.9 0.00024 24.1 5.5 34 111-144 6-39 (42)
31 3ghg_A Fibrinogen alpha chain; 77.2 3.6 0.00012 37.8 5.7 47 94-140 89-136 (562)
32 1ci6_A Transcription factor AT 77.0 13 0.00043 24.3 7.0 35 111-145 20-54 (63)
33 1gmj_A ATPase inhibitor; coile 75.5 15 0.00051 25.8 7.3 42 103-144 24-67 (84)
34 3twe_A Alpha4H; unknown functi 75.4 4.3 0.00015 22.3 3.6 22 124-145 4-25 (27)
35 3rvy_A ION transport protein; 74.8 2.4 8.3E-05 34.3 3.6 20 127-146 255-274 (285)
36 1jnm_A Proto-oncogene C-JUN; B 74.4 14 0.0005 23.7 7.5 45 101-145 16-60 (62)
37 1a93_B MAX protein, coiled coi 74.4 5.3 0.00018 23.6 4.0 23 119-141 12-34 (34)
38 1t2k_D Cyclic-AMP-dependent tr 72.7 16 0.00054 23.4 7.7 33 113-145 21-53 (61)
39 3nmd_A CGMP dependent protein 71.4 9.3 0.00032 26.1 5.3 24 121-144 40-63 (72)
40 1nkp_B MAX protein, MYC proto- 70.8 9.9 0.00034 25.7 5.5 26 121-146 54-79 (83)
41 3pjs_K KCSA, voltage-gated pot 69.9 8.5 0.00029 29.1 5.5 24 122-145 139-162 (166)
42 2dgc_A Protein (GCN4); basic d 68.9 12 0.00042 24.4 5.4 26 112-137 35-60 (63)
43 3nmd_A CGMP dependent protein 68.6 16 0.00054 24.9 6.0 33 111-143 37-69 (72)
44 3bxl_B CAM, voltage-dependent 68.4 4.1 0.00014 22.7 2.4 15 90-104 3-17 (26)
45 3hnw_A Uncharacterized protein 67.9 36 0.0012 25.5 9.7 26 118-143 100-125 (138)
46 2pnv_A Small conductance calci 67.3 13 0.00046 22.8 5.0 28 118-145 13-40 (43)
47 2dfs_A Myosin-5A; myosin-V, in 64.7 20 0.00069 35.2 8.2 30 115-144 1017-1046(1080)
48 4ath_A MITF, microphthalmia-as 63.7 29 0.00098 24.2 6.7 46 96-148 38-83 (83)
49 3efg_A Protein SLYX homolog; x 63.5 10 0.00036 25.9 4.4 26 120-145 27-52 (78)
50 2wuj_A Septum site-determining 62.3 14 0.00047 23.6 4.6 33 111-143 24-56 (57)
51 1fxk_A Prefoldin; archaeal pro 62.1 25 0.00086 24.1 6.4 35 112-146 70-104 (107)
52 3hnw_A Uncharacterized protein 60.7 37 0.0013 25.4 7.4 33 113-145 102-134 (138)
53 2zqm_A Prefoldin beta subunit 60.3 27 0.00092 24.3 6.3 35 112-146 75-109 (117)
54 1deq_A Fibrinogen (alpha chain 60.0 64 0.0022 28.4 9.7 52 92-143 90-142 (390)
55 2jee_A YIIU; FTSZ, septum, coi 59.5 15 0.00052 25.5 4.6 20 113-132 26-45 (81)
56 2v66_B Nuclear distribution pr 57.5 53 0.0018 23.9 8.3 35 112-146 40-74 (111)
57 2pnv_A Small conductance calci 56.1 15 0.00051 22.6 3.7 23 116-138 18-40 (43)
58 1kd8_A GABH AIV, GCN4 acid bas 55.5 30 0.001 20.5 5.3 30 112-141 6-35 (36)
59 4etp_A Kinesin-like protein KA 55.3 24 0.00082 30.7 6.3 26 114-139 17-42 (403)
60 3vmx_A Voltage-gated hydrogen 55.2 37 0.0013 21.4 7.7 34 117-150 14-47 (48)
61 3pjs_K KCSA, voltage-gated pot 54.8 7.8 0.00027 29.3 2.8 25 114-138 138-162 (166)
62 3ljm_A Coil Ser L9C; de novo d 54.8 22 0.00074 20.1 3.9 26 116-141 3-28 (31)
63 3mq9_A Bone marrow stromal ant 53.9 20 0.00069 30.8 5.6 17 68-84 369-385 (471)
64 3oja_B Anopheles plasmodium-re 53.3 51 0.0017 28.9 8.2 21 124-144 561-581 (597)
65 3dve_B Voltage-dependent N-typ 52.8 8.7 0.0003 20.8 1.9 15 90-104 6-20 (23)
66 1m1j_A Fibrinogen alpha subuni 52.5 66 0.0023 29.1 8.7 52 93-144 89-155 (491)
67 2lw1_A ABC transporter ATP-bin 52.0 31 0.001 23.6 5.3 25 119-143 61-85 (89)
68 1gd2_E Transcription factor PA 52.0 50 0.0017 22.0 6.5 29 115-143 30-65 (70)
69 3dvk_B Voltage-dependent R-typ 51.3 10 0.00035 20.5 2.1 15 90-104 7-21 (23)
70 3gpv_A Transcriptional regulat 51.0 39 0.0013 25.0 6.1 38 109-146 97-134 (148)
71 2lw1_A ABC transporter ATP-bin 50.9 25 0.00084 24.1 4.6 21 125-145 26-46 (89)
72 1nkp_B MAX protein, MYC proto- 50.9 19 0.00067 24.1 4.0 24 117-140 57-80 (83)
73 1zxa_A CGMP-dependent protein 50.9 29 0.00098 23.3 4.7 23 122-144 26-48 (67)
74 1a93_B MAX protein, coiled coi 50.8 27 0.00092 20.5 4.0 25 108-132 8-32 (34)
75 1zme_C Proline utilization tra 50.4 12 0.00042 23.6 2.8 22 116-137 46-67 (70)
76 2xdj_A Uncharacterized protein 49.5 53 0.0018 22.6 6.1 33 113-145 26-58 (83)
77 3efg_A Protein SLYX homolog; x 49.4 58 0.002 22.0 6.9 40 110-149 24-63 (78)
78 3oja_B Anopheles plasmodium-re 48.8 53 0.0018 28.8 7.6 31 114-144 537-567 (597)
79 2aze_B Transcription factor E2 47.9 39 0.0013 24.2 5.4 30 112-141 11-40 (106)
80 1l8d_A DNA double-strand break 47.6 55 0.0019 22.7 6.2 29 116-144 73-101 (112)
81 3u06_A Protein claret segregat 47.4 40 0.0014 29.4 6.5 31 113-143 9-39 (412)
82 2zqm_A Prefoldin beta subunit 46.7 53 0.0018 22.7 6.0 32 110-141 80-111 (117)
83 1fxk_C Protein (prefoldin); ar 46.7 57 0.0019 23.3 6.3 32 114-145 95-126 (133)
84 3a2a_A Voltage-gated hydrogen 45.7 60 0.002 21.1 6.3 35 117-151 21-55 (58)
85 3tso_C RAB11 family-interactin 44.8 41 0.0014 23.0 4.8 29 118-146 18-46 (75)
86 3iyn_Q Protein IX, PIX, hexon- 44.7 56 0.0019 24.6 6.0 34 113-146 97-130 (140)
87 2oqq_A Transcription factor HY 43.2 55 0.0019 20.0 5.7 23 113-135 16-38 (42)
88 1fxk_C Protein (prefoldin); ar 43.1 82 0.0028 22.5 6.7 37 107-143 95-131 (133)
89 4dzn_A Coiled-coil peptide CC- 42.7 46 0.0016 18.9 4.8 26 117-142 5-30 (33)
90 3e5y_A TRMH family RNA methylt 40.3 16 0.00054 27.4 2.4 17 87-103 139-155 (160)
91 3gp4_A Transcriptional regulat 40.2 1.1E+02 0.0036 22.4 7.8 37 109-145 83-119 (142)
92 1kd8_B GABH BLL, GCN4 acid bas 40.0 58 0.002 19.3 5.0 28 112-139 6-33 (36)
93 3n4j_A RNA methyltransferase; 39.8 16 0.00056 27.6 2.4 17 87-103 141-157 (165)
94 1gd2_E Transcription factor PA 39.5 83 0.0028 20.9 6.8 11 124-134 32-42 (70)
95 1fxk_A Prefoldin; archaeal pro 39.2 54 0.0018 22.3 5.0 29 111-139 76-104 (107)
96 3mq7_A Bone marrow stromal ant 39.0 86 0.003 23.2 6.2 36 109-144 73-108 (121)
97 4e61_A Protein BIM1; EB1-like 38.7 68 0.0023 23.2 5.5 36 111-146 22-57 (106)
98 1zme_C Proline utilization tra 38.7 32 0.0011 21.6 3.5 22 123-144 46-67 (70)
99 2aze_B Transcription factor E2 38.2 87 0.003 22.3 6.0 34 114-147 6-39 (106)
100 1g6u_A Domain swapped dimer; d 37.6 70 0.0024 19.6 4.6 25 115-139 21-45 (48)
101 2l5g_A GPS2 protein, G protein 37.3 35 0.0012 20.5 3.1 26 111-136 5-30 (38)
102 1rtm_1 Mannose-binding protein 36.7 66 0.0023 22.8 5.3 28 119-146 2-29 (149)
103 2gkw_A TNF receptor-associated 36.5 65 0.0022 24.5 5.5 30 113-142 6-35 (192)
104 1nlw_A MAD protein, MAX dimeri 36.5 52 0.0018 22.2 4.4 18 121-138 61-78 (80)
105 2zdi_C Prefoldin subunit alpha 36.3 84 0.0029 23.1 6.0 33 113-145 104-136 (151)
106 1ic2_A Tropomyosin alpha chain 36.3 95 0.0032 20.7 8.2 32 113-144 40-71 (81)
107 1nlw_A MAD protein, MAX dimeri 35.6 77 0.0026 21.3 5.1 18 114-131 61-78 (80)
108 2v71_A Nuclear distribution pr 35.6 1.6E+02 0.0056 23.2 8.3 24 118-141 92-115 (189)
109 2efr_A General control protein 35.1 1.5E+02 0.0051 22.6 7.5 44 102-145 65-115 (155)
110 3tnu_B Keratin, type II cytosk 34.7 86 0.0029 22.6 5.7 23 118-140 40-62 (129)
111 3l8u_A SMU.1707C, putative rRN 34.6 22 0.00074 27.5 2.4 18 87-104 150-167 (182)
112 1use_A VAsp, vasodilator-stimu 34.4 83 0.0028 19.5 5.7 33 116-148 9-43 (45)
113 2wuj_A Septum site-determining 34.3 38 0.0013 21.5 3.2 21 115-135 35-55 (57)
114 3iv1_A Tumor susceptibility ge 34.2 1.1E+02 0.0038 20.9 6.3 27 117-143 49-75 (78)
115 3c9i_A Tail needle protein GP2 33.6 55 0.0019 26.7 4.7 30 120-149 211-240 (242)
116 3swy_A Cyclic nucleotide-gated 33.5 62 0.0021 20.0 4.0 12 113-124 11-22 (46)
117 2wg5_A General control protein 33.4 34 0.0012 24.4 3.2 26 116-141 9-34 (109)
118 1nkp_A C-MYC, MYC proto-oncoge 33.4 92 0.0031 21.3 5.3 20 121-140 66-85 (88)
119 4ati_A MITF, microphthalmia-as 33.4 11 0.00038 27.5 0.5 32 117-148 87-118 (118)
120 2w83_C C-JUN-amino-terminal ki 33.2 70 0.0024 22.0 4.5 23 119-141 35-57 (77)
121 1zxa_A CGMP-dependent protein 33.0 80 0.0027 21.0 4.7 33 113-145 24-56 (67)
122 2vz4_A Tipal, HTH-type transcr 33.0 53 0.0018 22.7 4.1 28 118-145 78-105 (108)
123 3pzp_A DNA polymerase kappa; D 33.0 65 0.0022 28.8 5.6 57 94-150 28-89 (517)
124 1wle_A Seryl-tRNA synthetase; 32.8 1.9E+02 0.0064 25.9 8.6 43 115-158 117-159 (501)
125 2wvr_A Geminin; DNA replicatio 32.0 2E+02 0.0069 23.2 7.7 26 118-143 119-144 (209)
126 2jwa_A Receptor tyrosine-prote 31.8 31 0.0011 21.3 2.3 26 76-102 14-39 (44)
127 1jcd_A Major outer membrane li 31.5 99 0.0034 19.5 5.6 26 113-138 10-35 (52)
128 3p8q_A GP5, head protein; viru 31.5 10 0.00034 32.5 0.0 31 117-147 37-67 (385)
129 1dh3_A Transcription factor CR 31.4 65 0.0022 20.3 3.9 25 121-145 22-46 (55)
130 1flk_A TNF receptor associated 31.2 1.2E+02 0.004 23.8 6.4 32 111-142 40-71 (228)
131 1am9_A Srebp-1A, protein (ster 31.1 62 0.0021 21.8 4.0 21 119-139 55-75 (82)
132 1ses_A Seryl-tRNA synthetase; 31.0 2.6E+02 0.0089 24.2 9.8 43 115-158 65-107 (421)
133 1l8d_A DNA double-strand break 30.8 1.3E+02 0.0044 20.6 6.7 32 115-146 11-42 (112)
134 3onp_A TRNA/RRNA methyltransfe 30.7 22 0.00077 28.8 2.0 17 87-103 147-163 (249)
135 3g43_E Voltage-dependent L-typ 30.4 25 0.00086 24.4 1.9 16 89-104 63-78 (81)
136 3azd_A Short alpha-tropomyosin 30.4 14 0.00049 21.7 0.6 30 115-144 5-34 (37)
137 3uux_B Mitochondrial division 30.3 1.5E+02 0.0051 24.4 6.9 76 68-143 149-227 (242)
138 3qne_A Seryl-tRNA synthetase, 30.2 3E+02 0.01 24.6 9.7 40 118-158 75-114 (485)
139 1uii_A Geminin; human, DNA rep 29.7 1.4E+02 0.0048 20.7 7.7 30 115-144 47-76 (83)
140 2ke4_A CDC42-interacting prote 29.4 1.1E+02 0.0038 21.5 5.3 32 115-146 16-47 (98)
141 3pp5_A BRK1, protein brick1; t 29.4 66 0.0023 21.8 3.9 24 115-138 46-69 (73)
142 1lwu_C Fibrinogen gamma chain; 29.3 1.6E+02 0.0054 25.0 7.1 30 115-144 27-56 (323)
143 2ha8_A TAR (HIV-1) RNA loop bi 29.3 31 0.001 26.4 2.5 17 87-103 160-176 (184)
144 1wlq_A Geminin; coiled-coil; 2 29.0 1.5E+02 0.005 20.6 7.2 28 117-144 41-68 (83)
145 2rdd_B UPF0092 membrane protei 28.8 46 0.0016 19.2 2.7 24 86-109 8-31 (37)
146 1lwu_C Fibrinogen gamma chain; 28.5 1.6E+02 0.0055 25.0 7.0 29 117-145 22-50 (323)
147 4etp_A Kinesin-like protein KA 28.2 1.5E+02 0.005 25.6 6.9 35 111-145 7-41 (403)
148 1nkz_B Light-harvesting protei 28.2 1E+02 0.0035 18.6 4.4 27 67-93 2-28 (41)
149 1joc_A EEA1, early endosomal a 28.1 1.5E+02 0.0053 21.3 6.1 28 113-140 17-44 (125)
150 3ra3_A P1C; coiled coil domain 27.8 33 0.0011 18.9 1.7 15 125-139 11-25 (28)
151 1r8d_A Transcription activator 27.8 1.1E+02 0.0039 20.9 5.2 27 118-144 79-105 (109)
152 3m9b_A Proteasome-associated A 27.5 62 0.0021 26.8 4.1 36 111-146 58-93 (251)
153 3kty_A Probable methyltransfer 27.4 33 0.0011 25.8 2.4 16 87-102 157-172 (173)
154 1dip_A Delta-sleep-inducing pe 27.3 1E+02 0.0034 21.2 4.5 19 117-135 18-36 (78)
155 1yzm_A FYVE-finger-containing 27.2 1E+02 0.0034 19.5 4.2 24 111-134 25-48 (51)
156 3viq_B Mating-type switching p 26.8 81 0.0028 22.0 4.0 22 113-134 7-28 (85)
157 2dq0_A Seryl-tRNA synthetase; 26.7 3.2E+02 0.011 23.9 9.7 41 117-158 72-112 (455)
158 2xu6_A MDV1 coiled coil; prote 26.7 1.5E+02 0.0051 20.0 5.4 34 109-142 37-70 (72)
159 2ocy_A RAB guanine nucleotide 26.5 2.2E+02 0.0074 21.8 7.6 31 115-145 116-146 (154)
160 3t98_B Nucleoporin NUP58/NUP45 26.4 96 0.0033 21.7 4.5 29 119-147 10-38 (93)
161 2oqq_A Transcription factor HY 26.4 1.1E+02 0.0039 18.6 6.0 28 117-144 13-40 (42)
162 1q08_A Zn(II)-responsive regul 26.3 1.4E+02 0.0049 19.7 5.8 30 117-146 42-71 (99)
163 3u1c_A Tropomyosin alpha-1 cha 26.3 1.7E+02 0.0057 20.4 7.9 33 112-144 42-74 (101)
164 3m9b_A Proteasome-associated A 26.3 81 0.0028 26.1 4.6 26 117-142 71-96 (251)
165 2zdi_C Prefoldin subunit alpha 26.2 1.5E+02 0.0051 21.7 5.8 39 107-145 105-143 (151)
166 3q8t_A Beclin-1; autophagy, AT 26.1 1.7E+02 0.0057 20.3 7.6 35 108-142 19-53 (96)
167 3ra3_B P2F; coiled coil domain 26.0 67 0.0023 17.6 2.8 15 126-140 12-26 (28)
168 3cve_A Homer protein homolog 1 25.8 1.4E+02 0.0048 20.1 5.0 19 125-143 43-61 (72)
169 1p9i_A Cortexillin I/GCN4 hybr 25.8 83 0.0028 17.6 3.2 18 123-140 8-25 (31)
170 3rrk_A V-type ATPase 116 kDa s 25.7 1.5E+02 0.0051 24.4 6.3 23 114-136 106-128 (357)
171 3p8c_E Probable protein brick1 25.5 1E+02 0.0035 21.0 4.3 19 117-135 48-66 (75)
172 3kqg_A Langerin, C-type lectin 25.4 1.7E+02 0.0057 21.2 6.0 37 115-152 17-53 (182)
173 2w6b_A RHO guanine nucleotide 25.4 1.4E+02 0.0048 19.2 6.0 33 114-146 17-49 (56)
174 1wt6_A Myotonin-protein kinase 25.2 1.4E+02 0.0048 20.6 5.0 26 115-140 46-71 (81)
175 3ilk_A Uncharacterized tRNA/RR 25.1 1.6E+02 0.0056 23.6 6.3 17 87-103 145-161 (244)
176 3hhm_B NISH2 P85alpha; PI3KCA, 25.0 1.5E+02 0.0051 25.5 6.3 35 111-145 209-243 (373)
177 2yko_A LINE-1 ORF1P; RNA-bindi 24.5 1.7E+02 0.0057 23.9 6.2 36 111-146 17-52 (233)
178 2l5g_B Putative uncharacterize 24.5 1.3E+02 0.0043 18.4 4.4 26 119-144 7-32 (42)
179 1r8e_A Multidrug-efflux transp 24.5 2.1E+02 0.007 22.3 6.7 35 110-144 82-116 (278)
180 1v2x_A TRNA (GM18) methyltrans 24.4 42 0.0014 25.8 2.5 17 87-103 153-169 (194)
181 3ghg_A Fibrinogen alpha chain; 23.8 2.4E+02 0.0083 25.9 7.6 36 111-146 128-163 (562)
182 2v66_B Nuclear distribution pr 23.6 2.1E+02 0.0072 20.7 8.0 31 113-143 34-64 (111)
183 4ghu_A TNF receptor-associated 23.6 1.4E+02 0.0046 23.0 5.3 24 118-141 11-34 (198)
184 3m91_A Proteasome-associated A 23.5 1.4E+02 0.0049 18.7 7.0 36 112-147 14-49 (51)
185 1go4_E MAD1 (mitotic arrest de 23.1 1.5E+02 0.0051 21.1 5.0 29 111-139 16-44 (100)
186 3qne_A Seryl-tRNA synthetase, 23.0 3.5E+02 0.012 24.1 8.5 28 112-139 76-103 (485)
187 3nk6_A 23S rRNA methyltransfer 23.0 46 0.0016 27.3 2.6 18 87-104 252-269 (277)
188 3gp4_A Transcriptional regulat 23.0 1.9E+02 0.0067 20.9 5.9 34 111-144 92-125 (142)
189 3gpv_A Transcriptional regulat 22.9 1.6E+02 0.0054 21.5 5.4 33 114-146 95-127 (148)
190 3iyn_Q Protein IX, PIX, hexon- 22.9 1.7E+02 0.0057 22.0 5.3 30 111-140 102-131 (140)
191 3hh0_A Transcriptional regulat 22.9 1.8E+02 0.0061 21.3 5.7 28 118-145 84-111 (146)
192 1cxz_B Protein (PKN); protein- 22.8 53 0.0018 22.9 2.5 14 127-140 69-82 (86)
193 1ozj_A SMAD 3; MAD homology do 22.8 1.1E+02 0.0036 23.3 4.4 32 118-150 30-61 (144)
194 1gz0_A Hypothetical tRNA/RRNA 22.8 43 0.0015 27.0 2.3 16 87-102 237-252 (253)
195 1lgh_B LH II, B800/850, light 22.6 1.4E+02 0.0049 18.3 4.4 28 66-93 6-33 (45)
196 2wvr_A Geminin; DNA replicatio 22.4 3E+02 0.01 22.1 8.4 45 97-141 104-149 (209)
197 2er8_A Regulatory protein Leu3 22.3 48 0.0016 21.0 2.1 11 118-128 53-63 (72)
198 3kin_B Kinesin heavy chain; mo 22.3 1.5E+02 0.0051 21.2 5.0 13 118-130 100-112 (117)
199 1fzc_C Fibrin; blood coagulati 22.0 1.2E+02 0.004 25.8 5.0 33 114-146 18-50 (319)
200 1r8i_A TRAC; VIRB5, helical bu 21.9 1.2E+02 0.0041 23.7 4.7 23 124-146 18-40 (213)
201 3l4q_C Phosphatidylinositol 3- 21.8 2.4E+02 0.0081 21.9 6.3 36 111-146 100-135 (170)
202 2dq0_A Seryl-tRNA synthetase; 21.6 4E+02 0.014 23.3 8.5 27 113-139 75-101 (455)
203 3eff_K Voltage-gated potassium 21.5 1.6E+02 0.0056 20.8 5.1 73 64-137 59-134 (139)
204 1z0k_B FYVE-finger-containing 21.5 95 0.0032 20.8 3.4 23 112-134 44-66 (69)
205 1ic2_A Tropomyosin alpha chain 21.5 1.8E+02 0.0063 19.2 6.4 28 116-143 29-56 (81)
206 3v1a_A Computational design, M 21.4 86 0.003 19.6 3.0 34 95-133 13-46 (48)
207 2ve7_C Kinetochore protein NUF 21.3 1.2E+02 0.0039 24.7 4.6 23 118-140 152-174 (250)
208 1aq5_A Matrilin-1, CMP, cartil 21.3 1.6E+02 0.0054 18.3 5.0 17 126-142 28-44 (47)
209 3viq_B Mating-type switching p 21.3 1E+02 0.0035 21.4 3.7 24 118-141 5-28 (85)
210 3cvf_A Homer-3, homer protein 21.3 1.5E+02 0.005 20.3 4.5 17 126-142 50-66 (79)
211 1joc_A EEA1, early endosomal a 21.2 2.1E+02 0.0072 20.5 5.7 27 119-145 16-42 (125)
212 2yko_A LINE-1 ORF1P; RNA-bindi 21.0 2.2E+02 0.0076 23.2 6.3 34 113-146 12-45 (233)
213 1zjr_A TRNA (guanosine-2'-O-)- 21.0 53 0.0018 25.7 2.5 16 87-102 157-172 (211)
214 2xdj_A Uncharacterized protein 20.8 2.1E+02 0.0071 19.5 6.2 37 110-146 30-66 (83)
215 1ipa_A RRMH, RNA 2'-O-ribose m 20.6 53 0.0018 26.9 2.4 17 87-103 246-262 (274)
216 3rrk_A V-type ATPase 116 kDa s 20.6 1.6E+02 0.0055 24.2 5.5 30 114-143 99-128 (357)
217 3swf_A CGMP-gated cation chann 20.6 89 0.0031 21.2 3.2 38 109-146 9-50 (74)
218 2wg5_A General control protein 20.5 1.3E+02 0.0045 21.2 4.3 24 123-146 9-32 (109)
219 2rjz_A PILO protein; structura 20.4 1.3E+02 0.0043 22.3 4.4 38 112-149 20-60 (147)
220 3kqg_A Langerin, C-type lectin 20.1 1.1E+02 0.0038 22.2 4.0 20 125-144 20-39 (182)
No 1
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=93.11 E-value=0.5 Score=33.48 Aligned_cols=47 Identities=21% Similarity=0.322 Sum_probs=32.1
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 100 RSARSEARKEEIRKQELEALRQRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 100 Rs~~ke~~Kee~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
||+.+...++....++.+.|+.+-..|..+|+.|+.++..|..++..
T Consensus 29 rSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 29 KSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666666777777777777777777777777777765
No 2
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=92.37 E-value=0.92 Score=29.91 Aligned_cols=46 Identities=22% Similarity=0.349 Sum_probs=29.2
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 100 RSARSEARKEEIRKQELEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 100 Rs~~ke~~Kee~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
|...+...+.+...++.++|+.+..+|..+++.++.++..|.+++.
T Consensus 16 R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 16 RYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444445555666667777777777777777777777766654
No 3
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=92.17 E-value=0.76 Score=29.87 Aligned_cols=34 Identities=29% Similarity=0.425 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 111 IRKQELEALRQRDEGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 111 ~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~ 144 (169)
...++.+.|+.+..+|..+++.++.++..|.+.+
T Consensus 26 ~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 26 SLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444555555555555566665555555544
No 4
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=91.16 E-value=0.62 Score=32.30 Aligned_cols=32 Identities=22% Similarity=0.185 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 114 QELEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 114 ~~le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
+.-.+++.++++|+.+...|+.+|..|+..+.
T Consensus 36 ~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~ 67 (78)
T 1gu4_A 36 MRNLETQHKVLELTAENERLQKKVEQLSRELS 67 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555666666666666666666655553
No 5
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=90.28 E-value=2 Score=28.09 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 115 ELEALRQRDEGLARELELLRQKIEELEQ 142 (169)
Q Consensus 115 ~le~L~~~~~~l~~eve~l~~~i~ele~ 142 (169)
.+++|+.+++.|+.+...|+.+|..|+.
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~ 51 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLK 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555444443
No 6
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=89.76 E-value=0.5 Score=28.00 Aligned_cols=31 Identities=16% Similarity=0.269 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 115 ELEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 115 ~le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
++.+|++++++|-.+.++++.++..|..++.
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 4567888899998888999988888888764
No 7
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=89.61 E-value=1.1 Score=32.60 Aligned_cols=43 Identities=28% Similarity=0.356 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccc
Q 030907 114 QELEALRQRDEGLARELELLRQKIEELEQLAKQRGLSGIFSFK 156 (169)
Q Consensus 114 ~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~~~~~~~~~~~ 156 (169)
++++.|+.+++.|+.+.+.|+.+++.||--+..+-+.|-||-.
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~ 54 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQS 54 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCc
Confidence 3678899999999999999999999999999887788888753
No 8
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=88.28 E-value=1 Score=29.34 Aligned_cols=33 Identities=12% Similarity=0.136 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 113 KQELEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 113 ~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
.+.+++|+.++++|+.+...|..++..|+..+.
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777777777777777766554
No 9
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=88.23 E-value=0.78 Score=27.13 Aligned_cols=31 Identities=10% Similarity=0.190 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 115 ELEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 115 ~le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
++.+|++++++|-.+...++.++..|..++.
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXKLLX 32 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 4567888888888888888888888877764
No 10
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=88.13 E-value=2.7 Score=29.62 Aligned_cols=46 Identities=24% Similarity=0.306 Sum_probs=22.9
Q ss_pred HHHHhhhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 97 EVQRSARSEARKE--EIRKQELEALRQRDEGLARELELLRQKIEELEQ 142 (169)
Q Consensus 97 E~~Rs~~ke~~Ke--e~~~~~le~L~~~~~~l~~eve~l~~~i~ele~ 142 (169)
+|.|...++..+. +...++++.-.+++++++.+++..+.+|.+|+.
T Consensus 32 ~YfrqkekEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 32 RYFRARAKEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4555554443221 122344444555556666666666666666543
No 11
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=86.92 E-value=1.7 Score=27.97 Aligned_cols=32 Identities=22% Similarity=0.306 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 113 KQELEALRQRDEGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 113 ~~~le~L~~~~~~l~~eve~l~~~i~ele~~~ 144 (169)
+.-+++|+.++..|+.+...|..++..|.+.+
T Consensus 21 k~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 21 KEYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35577889999999999999999998887654
No 12
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=86.32 E-value=0.74 Score=27.13 Aligned_cols=30 Identities=20% Similarity=0.251 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 116 LEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 116 le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
+.+|++++++|-.+...++.++..|..++.
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLKKLVG 31 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 346778888888888888888888777664
No 13
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=86.05 E-value=1.3 Score=26.17 Aligned_cols=32 Identities=19% Similarity=0.194 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 115 ELEALRQRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 115 ~le~L~~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
+..+|++++++|-.+..++..++..|..++..
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~ll~~ 33 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAKAVGE 33 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 45677888888888888888888887777643
No 14
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=85.90 E-value=1.1 Score=26.28 Aligned_cols=30 Identities=13% Similarity=0.137 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 116 LEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 116 le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
+.+|++++++|-.+...+..++..+..++.
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~ll~ 31 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 456778888888888888888877777663
No 15
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=85.50 E-value=1.9 Score=25.83 Aligned_cols=31 Identities=23% Similarity=0.362 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 115 ELEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 115 ~le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
++.+|++++++|-.+..+++.++..|...+.
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 3556777777777777777777777776664
No 16
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=85.43 E-value=1.2 Score=26.58 Aligned_cols=30 Identities=20% Similarity=0.274 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 116 LEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 116 le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
+.+|++++++|..+...+..++..|+..+.
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 456677777777777777777777766654
No 17
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=85.34 E-value=1.4 Score=25.88 Aligned_cols=30 Identities=3% Similarity=0.141 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 116 LEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 116 le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
+.+|++++++|-.+...++.++..|..++.
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 356778888888888888888877777764
No 18
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=84.96 E-value=6 Score=27.79 Aligned_cols=37 Identities=22% Similarity=0.189 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 110 EIRKQELEALRQRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 110 e~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
+...++-.+++.++++|+.+...|+.+|.+|+..+..
T Consensus 32 ~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~ 68 (87)
T 1hjb_A 32 DKAKMRNLETQHKVLELTAENERLQKKVEQLSRELST 68 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666778899999999999999999999988764
No 19
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=84.63 E-value=2.1 Score=25.32 Aligned_cols=31 Identities=16% Similarity=0.227 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 115 ELEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 115 ~le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
++.+|++++++|-.+...+..++..+..++-
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~~lLg 32 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVAKLLG 32 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 4567788888888888888888887777764
No 20
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=84.43 E-value=3.8 Score=26.95 Aligned_cols=33 Identities=21% Similarity=0.288 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 113 KQELEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 113 ~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
++.+++|+.++++|..+...|..++..|.+.+.
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567788999999999999999999998887664
No 21
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=83.71 E-value=1.3 Score=26.16 Aligned_cols=31 Identities=6% Similarity=0.210 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 115 ELEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 115 ~le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
++.+|++++++|-.+-..+..++..|..++.
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIKKLLG 32 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHHHHhc
Confidence 4456778888888888888887777776654
No 22
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=82.21 E-value=3.6 Score=23.64 Aligned_cols=28 Identities=18% Similarity=0.367 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 119 LRQRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 119 L~~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
|++++..|+.-++.++.+++.||+.+.+
T Consensus 4 lee~~r~l~~ivq~lq~r~drle~tvqa 31 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRLEETVQA 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455666777778888888888887755
No 23
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=81.86 E-value=8.4 Score=25.02 Aligned_cols=39 Identities=21% Similarity=0.266 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 108 KEEIRKQELEALRQRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 108 Kee~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
.-+...++.+.|+.+...|..++..++.++..|..++.+
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~~ 62 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILAA 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344567788889999999999999999999999988753
No 24
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=81.37 E-value=3.8 Score=26.20 Aligned_cols=28 Identities=18% Similarity=0.198 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 117 EALRQRDEGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 117 e~L~~~~~~l~~eve~l~~~i~ele~~~ 144 (169)
+.|+.+.++|..+++.+..+++++.+.+
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555544433
No 25
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=80.56 E-value=12 Score=25.77 Aligned_cols=49 Identities=22% Similarity=0.342 Sum_probs=40.9
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 98 VQRSARSEARKEEIRKQELEALRQRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 98 ~~Rs~~ke~~Kee~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
..||..+...++....++.+.|+.+-..|..+|+.|+.++..|..++..
T Consensus 27 akrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~q 75 (78)
T 1gu4_A 27 VRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466667778888888999999999999999999999999998877643
No 26
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=80.35 E-value=2 Score=25.43 Aligned_cols=30 Identities=10% Similarity=0.346 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 116 LEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 116 le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
+.+|++++++|-.+...++.++..|..++.
T Consensus 3 M~QLEdKVEeLl~~n~~Le~EV~RLk~LL~ 32 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENELARIKKLLG 32 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHc
Confidence 456778888888888888888877777654
No 27
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=80.20 E-value=3.4 Score=26.41 Aligned_cols=30 Identities=23% Similarity=0.460 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 110 EIRKQELEALRQRDEGLARELELLRQKIEE 139 (169)
Q Consensus 110 e~~~~~le~L~~~~~~l~~eve~l~~~i~e 139 (169)
+..+.+.++|+.++++|..+++++++++..
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456677888999999999999999888753
No 28
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=78.86 E-value=15 Score=26.66 Aligned_cols=23 Identities=22% Similarity=0.497 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 030907 123 DEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 123 ~~~l~~eve~l~~~i~ele~~~~ 145 (169)
.+.+..++.++.++++++|+...
T Consensus 113 ~~~l~~~~~~l~~~l~~le~~~~ 135 (139)
T 3eff_K 113 EEAYTRTTRALHERFDRLERMLD 135 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666777778887777654
No 29
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=78.68 E-value=1.1 Score=36.41 Aligned_cols=60 Identities=17% Similarity=0.308 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 81 IGEIFIFTVAGAAVIFEVQRSARSEARKEEIRKQELEALRQRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 81 lgE~fIF~Va~~li~~E~~Rs~~ke~~Kee~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
++=.+++.+-.|+++-.+....+++.+++ .++.+++.+++..++++++++++++++.++.
T Consensus 222 i~~~~~lnl~~aii~~~f~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~ 281 (285)
T 3rvy_A 222 VVTFVMINLVVAICVDAMAILNQKEEQHI------IDEVQSHEDNINNEIIKLREEIVELKELIKT 281 (285)
T ss_dssp HHHHHHHHHHHHHHHHHC------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hhccccchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34444455555555544443333222211 1122244556666666777777777666543
No 30
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=78.22 E-value=6.9 Score=24.12 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 111 IRKQELEALRQRDEGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 111 ~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~ 144 (169)
+..|.++.+.++++--+..+..++.++.+||+..
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~a 39 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLEEEA 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456777777888888888888888888888765
No 31
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=77.22 E-value=3.6 Score=37.83 Aligned_cols=47 Identities=30% Similarity=0.277 Sum_probs=19.2
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 030907 94 VIFEVQRSARSEARKEEIRKQELE-ALRQRDEGLARELELLRQKIEEL 140 (169)
Q Consensus 94 i~~E~~Rs~~ke~~Kee~~~~~le-~L~~~~~~l~~eve~l~~~i~el 140 (169)
.++|++|...+...-.+....++. +|++++..|..+|+.+-.+|+.|
T Consensus 89 ~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvL 136 (562)
T 3ghg_A 89 NIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLL 136 (562)
T ss_dssp HHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555444433333222222 34444444444444333333333
No 32
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=77.05 E-value=13 Score=24.25 Aligned_cols=35 Identities=23% Similarity=0.339 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 111 IRKQELEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 111 ~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
...++.++|+.++++|..+...|..+|..|+.-..
T Consensus 20 KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~ 54 (63)
T 1ci6_A 20 KKRAEQEALTGECKELEKKNEALKERADSLAKEIQ 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667788999999999999999999999987654
No 33
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=75.51 E-value=15 Score=25.79 Aligned_cols=42 Identities=24% Similarity=0.275 Sum_probs=20.2
Q ss_pred hhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 103 RSEARKEEI--RKQELEALRQRDEGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 103 ~ke~~Kee~--~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~ 144 (169)
+.++..|+. ++.+.++|..-.+.+..+++....+|+.++..+
T Consensus 24 KrEaA~Ee~YfrqkekEqL~~LKkkl~~el~~h~~ei~~le~~i 67 (84)
T 1gmj_A 24 KREQAEEERYFRARAKEQLAALKKHKENEISHHAKEIERLQKEI 67 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555554 333334443333334455555555555555554
No 34
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=75.43 E-value=4.3 Score=22.31 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 030907 124 EGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 124 ~~l~~eve~l~~~i~ele~~~~ 145 (169)
++|-.++++++.+++.|...++
T Consensus 4 delykeledlqerlrklrkklr 25 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4667777778877777766654
No 35
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=74.83 E-value=2.4 Score=34.26 Aligned_cols=20 Identities=10% Similarity=0.117 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 030907 127 ARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 127 ~~eve~l~~~i~ele~~~~~ 146 (169)
..+.+++.++++++++.+..
T Consensus 255 ~~~~~~~~~~~~~l~~~~~~ 274 (285)
T 3rvy_A 255 QSHEDNINNEIIKLREEIVE 274 (285)
T ss_dssp --------------------
T ss_pred ccchHHHHHHHHHHHHHHHH
Confidence 34556666666666666544
No 36
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=74.45 E-value=14 Score=23.68 Aligned_cols=45 Identities=18% Similarity=0.350 Sum_probs=31.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 101 SARSEARKEEIRKQELEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 101 s~~ke~~Kee~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
+..+.....+...++.+.|+.+.++|..++..++.++..|.+.+.
T Consensus 16 ~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~ 60 (62)
T 1jnm_A 16 SRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVM 60 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444566777888999999999999999999988877664
No 37
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=74.45 E-value=5.3 Score=23.59 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 030907 119 LRQRDEGLARELELLRQKIEELE 141 (169)
Q Consensus 119 L~~~~~~l~~eve~l~~~i~ele 141 (169)
.+.+|++|.++...|+.+|+.||
T Consensus 12 ~qqDIddlkrQN~~Le~Qir~le 34 (34)
T 1a93_B 12 HQQDIDDLKRQNALLEQQVRALX 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hHhhHHHHHHHHHHHHHHHHhcC
Confidence 44555666666666666666554
No 38
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=72.66 E-value=16 Score=23.36 Aligned_cols=33 Identities=18% Similarity=0.202 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 113 KQELEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 113 ~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
.+..++|+.+++.|+.+...|..+|..|+..+.
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~ 53 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVA 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556788999999999999999999999987664
No 39
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=71.35 E-value=9.3 Score=26.10 Aligned_cols=24 Identities=21% Similarity=0.134 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 121 QRDEGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 121 ~~~~~l~~eve~l~~~i~ele~~~ 144 (169)
..+++++.++...+..|++|...+
T Consensus 40 ~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 40 ALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555554444
No 40
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=70.76 E-value=9.9 Score=25.66 Aligned_cols=26 Identities=15% Similarity=0.318 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 121 QRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 121 ~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
.++..|+.+++.++.+..+|++.+.+
T Consensus 54 ~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 54 RKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444445555555544443
No 41
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=69.94 E-value=8.5 Score=29.06 Aligned_cols=24 Identities=21% Similarity=0.468 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 122 RDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 122 ~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
..+.+..+++.+.++++++|+.+.
T Consensus 139 ~~~~l~~~i~~L~~~l~~le~~~~ 162 (166)
T 3pjs_K 139 AEEAYTRTTRALHERFDRLERMLD 162 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566667777777777777664
No 42
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=68.92 E-value=12 Score=24.42 Aligned_cols=26 Identities=19% Similarity=0.335 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 112 RKQELEALRQRDEGLARELELLRQKI 137 (169)
Q Consensus 112 ~~~~le~L~~~~~~l~~eve~l~~~i 137 (169)
...+.+.|+.+...|..+++.++..+
T Consensus 35 Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 35 LEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555554433
No 43
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=68.64 E-value=16 Score=24.92 Aligned_cols=33 Identities=9% Similarity=0.261 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 111 IRKQELEALRQRDEGLARELELLRQKIEELEQL 143 (169)
Q Consensus 111 ~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~ 143 (169)
.++..+++++.++.+...++..|+.+++.+..+
T Consensus 37 ~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrSV 69 (72)
T 3nmd_A 37 QRDALIDELELELDQKDELIQMLQNELDKYRSV 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 345567889999999999999999999887553
No 44
>3bxl_B CAM, voltage-dependent R-type calcium channel subunit alpha-1E peptide; ION channel, calmodulin, IQ domain, facillitation, inactivation; 2.30A {Rattus norvegicus} PDB: 3bxk_B
Probab=68.36 E-value=4.1 Score=22.67 Aligned_cols=15 Identities=13% Similarity=0.286 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHhhhh
Q 030907 90 AGAAVIFEVQRSARS 104 (169)
Q Consensus 90 a~~li~~E~~Rs~~k 104 (169)
=++++++|+||+.++
T Consensus 3 YAa~mI~e~yrq~K~ 17 (26)
T 3bxl_B 3 YAAMMIMDYYKQSKV 17 (26)
T ss_pred hHHHHHHHHHHHHHh
Confidence 367889999999875
No 45
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=67.92 E-value=36 Score=25.48 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 118 ALRQRDEGLARELELLRQKIEELEQL 143 (169)
Q Consensus 118 ~L~~~~~~l~~eve~l~~~i~ele~~ 143 (169)
.++.+.+++..+++.++.++++|+.-
T Consensus 100 ~~~~k~e~~~~e~~~l~~~~~~l~~~ 125 (138)
T 3hnw_A 100 AAQIKAESSAKEIKELKSEINKYQKN 125 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444443
No 46
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=67.26 E-value=13 Score=22.80 Aligned_cols=28 Identities=25% Similarity=0.373 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 118 ALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 118 ~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
++..+.++|++.+..+..+++.|.+.+.
T Consensus 13 el~~r~e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 13 DLNERSEDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555566666666655554
No 47
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=64.67 E-value=20 Score=35.20 Aligned_cols=30 Identities=23% Similarity=0.165 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 115 ELEALRQRDEGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 115 ~le~L~~~~~~l~~eve~l~~~i~ele~~~ 144 (169)
..++|++++..|+.+...|++++++|+...
T Consensus 1017 ~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~ 1046 (1080)
T 2dfs_A 1017 YKHETEQLVSELKEQNTLLKTEKEELNRRI 1046 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335677777788888888888888888443
No 48
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=63.65 E-value=29 Score=24.20 Aligned_cols=46 Identities=26% Similarity=0.365 Sum_probs=28.8
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 030907 96 FEVQRSARSEARKEEIRKQELEALRQRDEGLARELELLRQKIEELEQLAKQRG 148 (169)
Q Consensus 96 ~E~~Rs~~ke~~Kee~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~~~ 148 (169)
.||.|.-+++. +++.+.+.+...++.....+--+|.|||-..++.|
T Consensus 38 vdYI~~Lq~e~-------~r~~e~e~r~k~le~~n~~l~~riqELE~qa~~hg 83 (83)
T 4ath_A 38 VDYIRKLQREQ-------QRAKDLENRQKKLEHANRHLLLRVQELEMQARAHG 83 (83)
T ss_dssp HHHHHHHHHTH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHcC
Confidence 45555554433 22334445556677777788888999998887654
No 49
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=63.50 E-value=10 Score=25.87 Aligned_cols=26 Identities=19% Similarity=0.074 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 120 RQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 120 ~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
++.+++|...|-.|+.+|+.|++.++
T Consensus 27 E~tIeeLn~~v~~Qq~~Id~L~~ql~ 52 (78)
T 3efg_A 27 EQALTELSEALADARLTGARNAELIR 52 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555555554
No 50
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=62.33 E-value=14 Score=23.62 Aligned_cols=33 Identities=24% Similarity=0.248 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 111 IRKQELEALRQRDEGLARELELLRQKIEELEQL 143 (169)
Q Consensus 111 ~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~ 143 (169)
+..+=|+.+....+.+..++..|+.++.++++.
T Consensus 24 EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 24 EVNEFLAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445556667777778888888888888777653
No 51
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=62.13 E-value=25 Score=24.11 Aligned_cols=35 Identities=23% Similarity=0.429 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 112 RKQELEALRQRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 112 ~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
...+.+.++..++.++..++.++.++.+++..+.+
T Consensus 70 L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 70 LQEKLETLQLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666677777777777777777777776654
No 52
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=60.65 E-value=37 Score=25.41 Aligned_cols=33 Identities=18% Similarity=0.206 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 113 KQELEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 113 ~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
+.++++++++++++..++..++.++..||.-+.
T Consensus 102 ~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 102 QIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446667777777777777777777777776654
No 53
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=60.34 E-value=27 Score=24.30 Aligned_cols=35 Identities=29% Similarity=0.405 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 112 RKQELEALRQRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 112 ~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
...+.+.++..++.|+..++.++.++.+++..+.+
T Consensus 75 L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 75 LKEKIETLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666777777777777777777777777765
No 54
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=59.95 E-value=64 Score=28.40 Aligned_cols=52 Identities=31% Similarity=0.257 Sum_probs=27.2
Q ss_pred HHHHHHHHHhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 92 AAVIFEVQRSARSEARKEE-IRKQELEALRQRDEGLARELELLRQKIEELEQL 143 (169)
Q Consensus 92 ~li~~E~~Rs~~ke~~Kee-~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~ 143 (169)
...+++++|...+..+.-+ ...+-.++|++++..|.+.|..+=..|+.|+..
T Consensus 90 ~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~ 142 (390)
T 1deq_A 90 TKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKN 142 (390)
T ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3456788888777664444 233334455555555544444444444444333
No 55
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=59.45 E-value=15 Score=25.52 Aligned_cols=20 Identities=25% Similarity=0.597 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 030907 113 KQELEALRQRDEGLARELEL 132 (169)
Q Consensus 113 ~~~le~L~~~~~~l~~eve~ 132 (169)
+.++++|+.+...|..+.+.
T Consensus 26 qmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 26 QMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555444444444
No 56
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=57.46 E-value=53 Score=23.95 Aligned_cols=35 Identities=23% Similarity=0.310 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 112 RKQELEALRQRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 112 ~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
.+.++..|+...+.+...+-++.+.-+.||+.-+.
T Consensus 40 Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~ 74 (111)
T 2v66_B 40 LEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRA 74 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 34455555555555555555555555555555543
No 57
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=56.13 E-value=15 Score=22.60 Aligned_cols=23 Identities=30% Similarity=0.283 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 030907 116 LEALRQRDEGLARELELLRQKIE 138 (169)
Q Consensus 116 le~L~~~~~~l~~eve~l~~~i~ 138 (169)
-++|++++..|+..++.+...+.
T Consensus 18 ~e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 18 SEDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666665554
No 58
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=55.49 E-value=30 Score=20.52 Aligned_cols=30 Identities=23% Similarity=0.230 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 112 RKQELEALRQRDEGLARELELLRQKIEELE 141 (169)
Q Consensus 112 ~~~~le~L~~~~~~l~~eve~l~~~i~ele 141 (169)
..++.++|-.+..+|+.++..++.-+.+.|
T Consensus 6 LE~kVEeLl~~~~~Le~EV~RL~~ll~~~e 35 (36)
T 1kd8_A 6 LEAEVEEIESEVWHLENEVARLEKENAECE 35 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcccc
Confidence 345667788888899999988887776654
No 59
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=55.31 E-value=24 Score=30.69 Aligned_cols=26 Identities=12% Similarity=0.243 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 114 QELEALRQRDEGLARELELLRQKIEE 139 (169)
Q Consensus 114 ~~le~L~~~~~~l~~eve~l~~~i~e 139 (169)
++.+++++.+++++.+++++++++.+
T Consensus 17 ~~~~~l~~~~~~~~~~~~~~~~~~~~ 42 (403)
T 4etp_A 17 EKIAALKEKIKDTELGMKELNEILIK 42 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 60
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=55.19 E-value=37 Score=21.40 Aligned_cols=34 Identities=32% Similarity=0.303 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 030907 117 EALRQRDEGLARELELLRQKIEELEQLAKQRGLS 150 (169)
Q Consensus 117 e~L~~~~~~l~~eve~l~~~i~ele~~~~~~~~~ 150 (169)
+.|-.++.+|+..-..+.++|..|..+++..|+-
T Consensus 14 ~~L~~kv~~Le~~c~~~eQEieRL~~LLkqHgll 47 (48)
T 3vmx_A 14 IQLATKIQHLEFSCSEKEQEIERLNKLLKQNGLL 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHcCCC
Confidence 4466778888888888888899999999988764
No 61
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=54.85 E-value=7.8 Score=29.29 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 114 QELEALRQRDEGLARELELLRQKIE 138 (169)
Q Consensus 114 ~~le~L~~~~~~l~~eve~l~~~i~ 138 (169)
+..+.++++++++..+++.++.+++
T Consensus 138 ~~~~~l~~~i~~L~~~l~~le~~~~ 162 (166)
T 3pjs_K 138 AAEEAYTRTTRALHERFDRLERMLD 162 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445577777888888888877765
No 62
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=54.83 E-value=22 Score=20.05 Aligned_cols=26 Identities=38% Similarity=0.562 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 116 LEALRQRDEGLARELELLRQKIEELE 141 (169)
Q Consensus 116 le~L~~~~~~l~~eve~l~~~i~ele 141 (169)
.+.|+.+-..|+..++.+..+++.||
T Consensus 3 wealekkcaalesklqalekkleale 28 (31)
T 3ljm_A 3 WEALEKKCAALESKLQALEKKLEALE 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555566665555554
No 63
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=53.92 E-value=20 Score=30.77 Aligned_cols=17 Identities=18% Similarity=0.141 Sum_probs=10.4
Q ss_pred CCHHHHHHHHHHHHHHH
Q 030907 68 LNEEKAVQAAVDLIGEI 84 (169)
Q Consensus 68 L~Ee~Ave~GAe~lgE~ 84 (169)
.+.+.|++...+-+-+.
T Consensus 369 ~t~eeal~~~~~~i~~~ 385 (471)
T 3mq9_A 369 QTVDEALKDAQTRITAA 385 (471)
T ss_dssp SCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 45677777666655544
No 64
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=53.35 E-value=51 Score=28.88 Aligned_cols=21 Identities=38% Similarity=0.477 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 030907 124 EGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 124 ~~l~~eve~l~~~i~ele~~~ 144 (169)
.++.++++.+++++.++++.+
T Consensus 561 ~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 561 AELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 333344444444444444433
No 65
>3dve_B Voltage-dependent N-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.35A {Oryctolagus cuniculus} PDB: 3dvj_B
Probab=52.81 E-value=8.7 Score=20.78 Aligned_cols=15 Identities=20% Similarity=0.445 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHhhhh
Q 030907 90 AGAAVIFEVQRSARS 104 (169)
Q Consensus 90 a~~li~~E~~Rs~~k 104 (169)
=++++++|+||+.++
T Consensus 6 YAallI~d~~r~~k~ 20 (23)
T 3dve_B 6 YAALMIFDFYKQNKT 20 (26)
T ss_dssp HHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhh
Confidence 367889999999864
No 66
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=52.50 E-value=66 Score=29.09 Aligned_cols=52 Identities=13% Similarity=0.107 Sum_probs=27.8
Q ss_pred HHHHHHHHhhhhHHHHHHHH-HHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
Q 030907 93 AVIFEVQRSARSEARKEEIR-KQELEALRQRDEG--------------LARELELLRQKIEELEQLA 144 (169)
Q Consensus 93 li~~E~~Rs~~ke~~Kee~~-~~~le~L~~~~~~--------------l~~eve~l~~~i~ele~~~ 144 (169)
-.++++||...+..+..+.. .+-.++|+.+++. |+.-|+.|..+|..||...
T Consensus 89 ~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI 155 (491)
T 1m1j_A 89 VETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDI 155 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678888887766554432 3333344444443 4444455555555555544
No 67
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=52.03 E-value=31 Score=23.57 Aligned_cols=25 Identities=28% Similarity=0.228 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 119 LRQRDEGLARELELLRQKIEELEQL 143 (169)
Q Consensus 119 L~~~~~~l~~eve~l~~~i~ele~~ 143 (169)
+..++++++.+++.+-.|+.+|+.+
T Consensus 61 l~~~l~~~e~eLe~~~erWeeLe~~ 85 (89)
T 2lw1_A 61 VLADMAAAEQELEQAFERWEYLEAL 85 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444455555555555555443
No 68
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=51.95 E-value=50 Score=22.04 Aligned_cols=29 Identities=38% Similarity=0.442 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 030907 115 ELEALRQRDEGL-------ARELELLRQKIEELEQL 143 (169)
Q Consensus 115 ~le~L~~~~~~l-------~~eve~l~~~i~ele~~ 143 (169)
.+.+|+.++.+| ..+.+.|+.++..|..-
T Consensus 30 ~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~E 65 (70)
T 1gd2_E 30 HLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEE 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555544 44555555555555443
No 69
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=51.32 E-value=10 Score=20.47 Aligned_cols=15 Identities=13% Similarity=0.286 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHhhhh
Q 030907 90 AGAAVIFEVQRSARS 104 (169)
Q Consensus 90 a~~li~~E~~Rs~~k 104 (169)
=+++++.|++|..++
T Consensus 7 YA~llI~d~~r~~k~ 21 (23)
T 3dvk_B 7 YAAMMIMDYYKQSKV 21 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 367889999998764
No 70
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=51.00 E-value=39 Score=24.95 Aligned_cols=38 Identities=21% Similarity=0.213 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 109 EEIRKQELEALRQRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 109 ee~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
.+...+.++++++++.+|+...+.++..++.+++.+.+
T Consensus 97 ~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~ 134 (148)
T 3gpv_A 97 LKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEISS 134 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34556677778888888888888888888777776654
No 71
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=50.94 E-value=25 Score=24.06 Aligned_cols=21 Identities=33% Similarity=0.370 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 030907 125 GLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 125 ~l~~eve~l~~~i~ele~~~~ 145 (169)
.|..+++.+.++|.+|+..+.
T Consensus 26 ~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 26 QLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444443
No 72
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=50.91 E-value=19 Score=24.15 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 117 EALRQRDEGLARELELLRQKIEEL 140 (169)
Q Consensus 117 e~L~~~~~~l~~eve~l~~~i~el 140 (169)
+.|+.++++|..+.+.+++++..|
T Consensus 57 ~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 57 HTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666777777777777777654
No 73
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=50.88 E-value=29 Score=23.27 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 030907 122 RDEGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 122 ~~~~l~~eve~l~~~i~ele~~~ 144 (169)
++.+|+.++...+..|.+|...+
T Consensus 26 ~I~eLE~~L~~kd~eI~eLr~~L 48 (67)
T 1zxa_A 26 RIKELEKRLSEKEEEIQELKRKL 48 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555554444
No 74
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=50.84 E-value=27 Score=20.50 Aligned_cols=25 Identities=16% Similarity=0.462 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 108 KEEIRKQELEALRQRDEGLARELEL 132 (169)
Q Consensus 108 Kee~~~~~le~L~~~~~~l~~eve~ 132 (169)
|-...++++++|+.+..-|+.++-.
T Consensus 8 Kn~a~qqDIddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 8 KNDTHQQDIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHhhHHHHHHHHHHHHHHHHh
Confidence 3444555566666665555555443
No 75
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=50.41 E-value=12 Score=23.65 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 030907 116 LEALRQRDEGLARELELLRQKI 137 (169)
Q Consensus 116 le~L~~~~~~l~~eve~l~~~i 137 (169)
+++|++++..|+..+..++..+
T Consensus 46 ~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 46 LQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555443
No 76
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=49.53 E-value=53 Score=22.61 Aligned_cols=33 Identities=12% Similarity=0.198 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 113 KQELEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 113 ~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
..+++.|+.++..|.=.+|.+..+++.+.+..+
T Consensus 26 q~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQr 58 (83)
T 2xdj_A 26 QQQLSDNQSDIDSLRGQIQENQYQLNQVVERQK 58 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555544443
No 77
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=49.41 E-value=58 Score=22.03 Aligned_cols=40 Identities=13% Similarity=-0.042 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 030907 110 EIRKQELEALRQRDEGLARELELLRQKIEELEQLAKQRGL 149 (169)
Q Consensus 110 e~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~~~~ 149 (169)
.-+.+.+++|.+.+-+.+.++..++.+++.|.+.+++.+.
T Consensus 24 AfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 24 SFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3456788899999999999999999999999888877653
No 78
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=48.79 E-value=53 Score=28.76 Aligned_cols=31 Identities=35% Similarity=0.419 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 114 QELEALRQRDEGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 114 ~~le~L~~~~~~l~~eve~l~~~i~ele~~~ 144 (169)
++++.++++.++++..++.++.++.++.+-.
T Consensus 537 ~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~ 567 (597)
T 3oja_B 537 KETEDLEQENIALEKQLDNKRAKQAELRQET 567 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHhhhHHHHHHHhhhhhHHHHHHHHH
Confidence 3444455555566666666666655555443
No 79
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=47.85 E-value=39 Score=24.20 Aligned_cols=30 Identities=17% Similarity=0.338 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 112 RKQELEALRQRDEGLARELELLRQKIEELE 141 (169)
Q Consensus 112 ~~~~le~L~~~~~~l~~eve~l~~~i~ele 141 (169)
.+.+++.|+.+...|...+.+++++++.+.
T Consensus 11 Lk~El~~L~~~E~~LD~~i~~~~~~l~~lt 40 (106)
T 2aze_B 11 LTQDLRQLQESEQQLDHLMNICTTQLRLLS 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555555555555555544
No 80
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=47.57 E-value=55 Score=22.67 Aligned_cols=29 Identities=10% Similarity=0.126 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 116 LEALRQRDEGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 116 le~L~~~~~~l~~eve~l~~~i~ele~~~ 144 (169)
+++++.++.++..++..++.++.+++..+
T Consensus 73 l~~l~~~i~~l~~~i~~l~~~~~~l~~~~ 101 (112)
T 1l8d_A 73 LNNSKNTLAKLIDRKSELERELRRIDMEI 101 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443
No 81
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=47.39 E-value=40 Score=29.45 Aligned_cols=31 Identities=32% Similarity=0.325 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 113 KQELEALRQRDEGLARELELLRQKIEELEQL 143 (169)
Q Consensus 113 ~~~le~L~~~~~~l~~eve~l~~~i~ele~~ 143 (169)
.+++++++++.++++++++.++++++++++.
T Consensus 9 ~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~ 39 (412)
T 3u06_A 9 STEVVHLRQRTEELLRCNEQQAAELETCKEQ 39 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444333
No 82
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=46.74 E-value=53 Score=22.72 Aligned_cols=32 Identities=25% Similarity=0.346 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 110 EIRKQELEALRQRDEGLARELELLRQKIEELE 141 (169)
Q Consensus 110 e~~~~~le~L~~~~~~l~~eve~l~~~i~ele 141 (169)
+....+++.|+.+++.++.+++.++..+.++-
T Consensus 80 e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 80 ETLEVRLNALERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566778888889999999999888887765
No 83
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=46.73 E-value=57 Score=23.35 Aligned_cols=32 Identities=13% Similarity=0.196 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 114 QELEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 114 ~~le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
.+++.++..++.++..++.++.++..+++.++
T Consensus 95 ~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~ 126 (133)
T 1fxk_C 95 SQKNELESTLQKMGENLRAITDIMMKLSPQAE 126 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555443
No 84
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=45.71 E-value=60 Score=21.08 Aligned_cols=35 Identities=31% Similarity=0.360 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 030907 117 EALRQRDEGLARELELLRQKIEELEQLAKQRGLSG 151 (169)
Q Consensus 117 e~L~~~~~~l~~eve~l~~~i~ele~~~~~~~~~~ 151 (169)
..|-.+++.|+..-...+++|..|..+|+..|+-+
T Consensus 21 ~~L~~kv~~Le~~c~e~eQEieRL~~LLkqHgl~~ 55 (58)
T 3a2a_A 21 VQLAAKIQHLEFSCSEKEQEIERLNKLLRQHGLLG 55 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 35777888999889999999999999999877643
No 85
>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A
Probab=44.76 E-value=41 Score=23.05 Aligned_cols=29 Identities=21% Similarity=0.098 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 118 ALRQRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 118 ~L~~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
+|-+-+-.++.++...+.+++|||.+.-.
T Consensus 18 ELi~l~lk~~~~l~~k~~~v~eLEdYID~ 46 (75)
T 3tso_C 18 EVLQELVKHKELLRRKDTHIRELEDYIDN 46 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555667777888888888888887643
No 86
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=44.73 E-value=56 Score=24.63 Aligned_cols=34 Identities=29% Similarity=0.439 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 113 KQELEALRQRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 113 ~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
++.|..+-.+++.|.++++++.+++.+|.+...+
T Consensus 97 ed~L~~~laqLe~ls~qL~~ls~~v~~L~~q~~~ 130 (140)
T 3iyn_Q 97 DDKLTALLAQLDSLTRELNVVSQQLLDLRQQVSA 130 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTT
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455556666666777777777777665544
No 87
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=43.18 E-value=55 Score=20.00 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 030907 113 KQELEALRQRDEGLARELELLRQ 135 (169)
Q Consensus 113 ~~~le~L~~~~~~l~~eve~l~~ 135 (169)
..+..+|+.++..|++|..-|++
T Consensus 16 e~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 16 ENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHH
Confidence 33444555555555555555553
No 88
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=43.06 E-value=82 Score=22.48 Aligned_cols=37 Identities=14% Similarity=0.148 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 107 RKEEIRKQELEALRQRDEGLARELELLRQKIEELEQL 143 (169)
Q Consensus 107 ~Kee~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~ 143 (169)
+|.+.....++.++..++.+...+..+...++++.+.
T Consensus 95 ~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~~ 131 (133)
T 1fxk_C 95 SQKNELESTLQKMGENLRAITDIMMKLSPQAEELLAA 131 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4455667777888888888888888888888877543
No 89
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=42.66 E-value=46 Score=18.92 Aligned_cols=26 Identities=35% Similarity=0.483 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 117 EALRQRDEGLARELELLRQKIEELEQ 142 (169)
Q Consensus 117 e~L~~~~~~l~~eve~l~~~i~ele~ 142 (169)
..|.+++..|..++..++-+|..|.+
T Consensus 5 aalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 5 AALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34444555555555555555555443
No 90
>3e5y_A TRMH family RNA methyltransferase; ssgcid, protein knot, decode, structural genomics; 2.40A {Burkholderia pseudomallei 305} SCOP: c.116.1.0
Probab=40.27 E-value=16 Score=27.43 Aligned_cols=17 Identities=35% Similarity=0.430 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHhhh
Q 030907 87 FTVAGAAVIFEVQRSAR 103 (169)
Q Consensus 87 F~Va~~li~~E~~Rs~~ 103 (169)
-++++++++||++|+..
T Consensus 139 vsvAaaI~lye~~rq~~ 155 (160)
T 3e5y_A 139 LSNTVAVVVFEAWRQAG 155 (160)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 47899999999999864
No 91
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=40.22 E-value=1.1e+02 Score=22.42 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 109 EEIRKQELEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 109 ee~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
.+...++++.+++++.+|+...+.++..++..+....
T Consensus 83 ~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~ 119 (142)
T 3gp4_A 83 AELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLI 119 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777888888888888888888877777654
No 92
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=39.99 E-value=58 Score=19.28 Aligned_cols=28 Identities=25% Similarity=0.290 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 112 RKQELEALRQRDEGLARELELLRQKIEE 139 (169)
Q Consensus 112 ~~~~le~L~~~~~~l~~eve~l~~~i~e 139 (169)
..++.++|-.+..+|+.++..++.-+.+
T Consensus 6 LE~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 6 LKAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 3455667777778888888887766654
No 93
>3n4j_A RNA methyltransferase; center for structural genomics of INF diseases, csgid; 1.47A {Yersinia pestis} SCOP: c.116.1.1 PDB: 3n4k_A* 1mxi_A* 1j85_A*
Probab=39.81 E-value=16 Score=27.57 Aligned_cols=17 Identities=24% Similarity=0.333 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHhhh
Q 030907 87 FTVAGAAVIFEVQRSAR 103 (169)
Q Consensus 87 F~Va~~li~~E~~Rs~~ 103 (169)
-++|+++++||++|+..
T Consensus 141 vavAaaI~lye~~rq~~ 157 (165)
T 3n4j_A 141 LSNAVSVVVYEAWRQLG 157 (165)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 47899999999999864
No 94
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=39.48 E-value=83 Score=20.95 Aligned_cols=11 Identities=18% Similarity=0.380 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 030907 124 EGLARELELLR 134 (169)
Q Consensus 124 ~~l~~eve~l~ 134 (169)
.+|+..+..++
T Consensus 32 ~~LE~~v~~le 42 (70)
T 1gd2_E 32 KALETQVVTLK 42 (70)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444443333
No 95
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=39.17 E-value=54 Score=22.35 Aligned_cols=29 Identities=14% Similarity=0.333 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 111 IRKQELEALRQRDEGLARELELLRQKIEE 139 (169)
Q Consensus 111 ~~~~~le~L~~~~~~l~~eve~l~~~i~e 139 (169)
....+++.|+.+++.++.+++.++..+.+
T Consensus 76 ~i~~~i~~le~~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 76 TLQLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777777777777777776654
No 96
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=39.01 E-value=86 Score=23.23 Aligned_cols=36 Identities=22% Similarity=0.225 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 109 EEIRKQELEALRQRDEGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 109 ee~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~ 144 (169)
-++.+.++..|..++.+...+++.++.....+....
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~ 108 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQVLSVRI 108 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHh
Confidence 344455666666666666666666666666555444
No 97
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=38.68 E-value=68 Score=23.24 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 111 IRKQELEALRQRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 111 ~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
...+++.+|+..++.++.+=.--=.+++.+|-++..
T Consensus 22 ~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQe 57 (106)
T 4e61_A 22 SLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILVHT 57 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566666665555555677788877754
No 98
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=38.65 E-value=32 Score=21.57 Aligned_cols=22 Identities=18% Similarity=0.209 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 030907 123 DEGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 123 ~~~l~~eve~l~~~i~ele~~~ 144 (169)
++.|+..+..|+..|..|+..+
T Consensus 46 ~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 46 LQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555443
No 99
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=38.18 E-value=87 Score=22.31 Aligned_cols=34 Identities=18% Similarity=0.089 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030907 114 QELEALRQRDEGLARELELLRQKIEELEQLAKQR 147 (169)
Q Consensus 114 ~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~~ 147 (169)
.++..|+.+++.|..+-..|+..|+.+.+-++..
T Consensus 6 ~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~l 39 (106)
T 2aze_B 6 GRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLL 39 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999999988888763
No 100
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=37.64 E-value=70 Score=19.55 Aligned_cols=25 Identities=32% Similarity=0.514 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 115 ELEALRQRDEGLARELELLRQKIEE 139 (169)
Q Consensus 115 ~le~L~~~~~~l~~eve~l~~~i~e 139 (169)
++..|+.++..|+..+..++.++..
T Consensus 21 elaaleselqalekklaalksklqa 45 (48)
T 1g6u_A 21 ELAALESELQALEKKLAALKSKLQA 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555544443
No 101
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=37.28 E-value=35 Score=20.45 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 111 IRKQELEALRQRDEGLARELELLRQK 136 (169)
Q Consensus 111 ~~~~~le~L~~~~~~l~~eve~l~~~ 136 (169)
+....+++.+.++..++..++.++..
T Consensus 5 ee~mTLeEtkeQi~~l~~kl~~LkeE 30 (38)
T 2l5g_A 5 EERMSLEETKEQILKLEEKLLALQEE 30 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666666666666666666544
No 102
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=36.74 E-value=66 Score=22.76 Aligned_cols=28 Identities=18% Similarity=0.287 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 119 LRQRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 119 L~~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
|.+++..|+.++..++.++..+.....-
T Consensus 2 ~~~~l~~l~~~~~~l~~~l~~l~~~~~~ 29 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKLELTNKLHAF 29 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcC
Confidence 4455666666777777777777766543
No 103
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=36.54 E-value=65 Score=24.51 Aligned_cols=30 Identities=17% Similarity=0.071 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 113 KQELEALRQRDEGLARELELLRQKIEELEQ 142 (169)
Q Consensus 113 ~~~le~L~~~~~~l~~eve~l~~~i~ele~ 142 (169)
++++..++.++..+..++..++.+++++|.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (192)
T 2gkw_A 6 ESQLSRHDQMLSVHDIRLADMDLRFQVLET 35 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445555566666666666666666666664
No 104
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=36.52 E-value=52 Score=22.22 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 030907 121 QRDEGLARELELLRQKIE 138 (169)
Q Consensus 121 ~~~~~l~~eve~l~~~i~ 138 (169)
.+.+.|..+.+.|+.+++
T Consensus 61 ~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 61 HQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 334444444445554443
No 105
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=36.34 E-value=84 Score=23.12 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 113 KQELEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 113 ~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
..+++.++..++.++..++.++.++..++..+.
T Consensus 104 ~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~ 136 (151)
T 2zdi_C 104 EKRLKEYDEAIKKTQGALAELEKRIGEVARKAQ 136 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666666665555554
No 106
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=36.29 E-value=95 Score=20.69 Aligned_cols=32 Identities=22% Similarity=0.392 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 113 KQELEALRQRDEGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 113 ~~~le~L~~~~~~l~~eve~l~~~i~ele~~~ 144 (169)
.+++..|+.++..++.+++....++.....-|
T Consensus 40 E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kL 71 (81)
T 1ic2_A 40 EDELVALQKKLKGTEDELDKYSESLKDAQEKL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666666555554
No 107
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=35.63 E-value=77 Score=21.35 Aligned_cols=18 Identities=28% Similarity=0.613 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 030907 114 QELEALRQRDEGLARELE 131 (169)
Q Consensus 114 ~~le~L~~~~~~l~~eve 131 (169)
.+.+.|+.+.+.|..+++
T Consensus 61 ~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 61 HQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344445555555554443
No 108
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=35.55 E-value=1.6e+02 Score=23.19 Aligned_cols=24 Identities=25% Similarity=0.192 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 118 ALRQRDEGLARELELLRQKIEELE 141 (169)
Q Consensus 118 ~L~~~~~~l~~eve~l~~~i~ele 141 (169)
.|++.+..+....+.++.+|++||
T Consensus 92 ~Lq~el~~l~~~~~~l~~~ireLE 115 (189)
T 2v71_A 92 VLEDDLSQTRAIKEQLHKYVRELE 115 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 109
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=35.11 E-value=1.5e+02 Score=22.63 Aligned_cols=44 Identities=27% Similarity=0.362 Sum_probs=24.0
Q ss_pred hhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 102 ARSEARKEEIRKQELEALRQ-------RDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 102 ~~ke~~Kee~~~~~le~L~~-------~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
..+...|++....++..|.. +-+.-++.+..++..|+.++.-+.
T Consensus 65 eekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~ 115 (155)
T 2efr_A 65 AEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELY 115 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555554444443 334445666666666666666553
No 110
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=34.69 E-value=86 Score=22.64 Aligned_cols=23 Identities=13% Similarity=0.291 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 030907 118 ALRQRDEGLARELELLRQKIEEL 140 (169)
Q Consensus 118 ~L~~~~~~l~~eve~l~~~i~el 140 (169)
+++..+..|+.+++.++.+...|
T Consensus 40 elrr~iq~L~~el~~l~~~~~~L 62 (129)
T 3tnu_B 40 EMNRMIQRLRAEIDNVKKQCANL 62 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHH
Confidence 33333333333333333333333
No 111
>3l8u_A SMU.1707C, putative rRNA methylase; methyltransferase, knotted protein; 2.00A {Streptococcus mutans} SCOP: c.116.1.0
Probab=34.58 E-value=22 Score=27.47 Aligned_cols=18 Identities=11% Similarity=0.250 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 030907 87 FTVAGAAVIFEVQRSARS 104 (169)
Q Consensus 87 F~Va~~li~~E~~Rs~~k 104 (169)
-++|+++++||++|+..-
T Consensus 150 VsvAaaI~lyE~~rq~~~ 167 (182)
T 3l8u_A 150 LSNTVCMIVYEALRQQDF 167 (182)
T ss_dssp HHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 468999999999998753
No 112
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=34.44 E-value=83 Score=19.48 Aligned_cols=33 Identities=30% Similarity=0.527 Sum_probs=19.9
Q ss_pred HHHHHHH-HHHHHHHHHHHHHH-HHHHHHHHHhcC
Q 030907 116 LEALRQR-DEGLARELELLRQK-IEELEQLAKQRG 148 (169)
Q Consensus 116 le~L~~~-~~~l~~eve~l~~~-i~ele~~~~~~~ 148 (169)
++.++++ ++++.+|++.++.. |+.+.+.+..+|
T Consensus 9 le~~KqEIL~E~RkElqK~K~EIIeAi~~El~~~~ 43 (45)
T 1use_A 9 LQRVKQELLEEVKKELQKVKEEIIEAFVQELRKRG 43 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4444444 35677777777766 456666666665
No 113
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=34.27 E-value=38 Score=21.48 Aligned_cols=21 Identities=14% Similarity=0.300 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 030907 115 ELEALRQRDEGLARELELLRQ 135 (169)
Q Consensus 115 ~le~L~~~~~~l~~eve~l~~ 135 (169)
+++.+.+++.+|..+++.++.
T Consensus 35 ~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 35 DYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444433
No 114
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=34.20 E-value=1.1e+02 Score=20.91 Aligned_cols=27 Identities=33% Similarity=0.444 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 117 EALRQRDEGLARELELLRQKIEELEQL 143 (169)
Q Consensus 117 e~L~~~~~~l~~eve~l~~~i~ele~~ 143 (169)
+.|+++..+++..++.++.+..||+++
T Consensus 49 ~~l~~E~~~l~~ni~~lk~K~~EL~~~ 75 (78)
T 3iv1_A 49 TRLDQEVAEVDKNIELLKKKDEELSSA 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666777777776654
No 115
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=33.57 E-value=55 Score=26.74 Aligned_cols=30 Identities=20% Similarity=0.349 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 030907 120 RQRDEGLARELELLRQKIEELEQLAKQRGL 149 (169)
Q Consensus 120 ~~~~~~l~~eve~l~~~i~ele~~~~~~~~ 149 (169)
+.++..+...+..-++||+.||.++++.||
T Consensus 211 qseiqa~an~L~~~RqrikAlEdalR~HGL 240 (242)
T 3c9i_A 211 QSEIQAIANALITERRRTKAMEDALRAHGL 240 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 567788888999999999999999999876
No 116
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=33.52 E-value=62 Score=20.05 Aligned_cols=12 Identities=25% Similarity=0.343 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 030907 113 KQELEALRQRDE 124 (169)
Q Consensus 113 ~~~le~L~~~~~ 124 (169)
...++.|+.+..
T Consensus 11 e~~ld~LqTr~A 22 (46)
T 3swy_A 11 GSSLDTLQTRFA 22 (46)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 117
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=33.44 E-value=34 Score=24.39 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 116 LEALRQRDEGLARELELLRQKIEELE 141 (169)
Q Consensus 116 le~L~~~~~~l~~eve~l~~~i~ele 141 (169)
+.+|+.+.+++.++++.++.+++.|.
T Consensus 9 ~~~l~~~~~~l~~~i~~lkeel~~L~ 34 (109)
T 2wg5_A 9 MKQLEDKVEELLSKNYHLENEVARLR 34 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666666666666666665554
No 118
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=33.40 E-value=92 Score=21.25 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 030907 121 QRDEGLARELELLRQKIEEL 140 (169)
Q Consensus 121 ~~~~~l~~eve~l~~~i~el 140 (169)
..++.|..+.+.|+.+|.+|
T Consensus 66 ~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 66 SEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33444555555555555554
No 119
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=33.40 E-value=11 Score=27.49 Aligned_cols=32 Identities=28% Similarity=0.420 Sum_probs=2.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 030907 117 EALRQRDEGLARELELLRQKIEELEQLAKQRG 148 (169)
Q Consensus 117 e~L~~~~~~l~~eve~l~~~i~ele~~~~~~~ 148 (169)
.+...+...|+.....|..+|.+||...++.|
T Consensus 87 ~~~~~~~~~l~~~n~~L~~riqeLE~~a~~~g 118 (118)
T 4ati_A 87 KDLENRQKKLEHANRHLLLRVQELEMQARAHG 118 (118)
T ss_dssp HHHCC---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33444556777788888889999988776654
No 120
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=33.24 E-value=70 Score=21.96 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 030907 119 LRQRDEGLARELELLRQKIEELE 141 (169)
Q Consensus 119 L~~~~~~l~~eve~l~~~i~ele 141 (169)
|-.++++|..+-+.++.++..++
T Consensus 35 LI~rvdELt~E~e~l~~El~s~~ 57 (77)
T 2w83_C 35 LIAKVDELTCEKDVLQGELEAVK 57 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 121
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=33.02 E-value=80 Score=21.02 Aligned_cols=33 Identities=15% Similarity=0.336 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 113 KQELEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 113 ~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
...+.+|+..+++-..++..++.+++.+..++.
T Consensus 24 de~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 24 EERIKELEKRLSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345567778888888899999999999888875
No 122
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=33.00 E-value=53 Score=22.70 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 118 ALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 118 ~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
.|+.+++.+..+++.++..++.++..+.
T Consensus 78 ~l~~~~~~l~~~i~~l~~~~~~l~~~~~ 105 (108)
T 2vz4_A 78 HLRRQHELLSARIGKLQKMAAAVEQAME 105 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666677766666666654
No 123
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens}
Probab=32.98 E-value=65 Score=28.78 Aligned_cols=57 Identities=21% Similarity=0.374 Sum_probs=34.1
Q ss_pred HHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-hcCCC
Q 030907 94 VIFEVQRSA---RSEARKEEIRKQELEALRQRDEGLAR-ELELLRQKIEELEQLAK-QRGLS 150 (169)
Q Consensus 94 i~~E~~Rs~---~ke~~Kee~~~~~le~L~~~~~~l~~-eve~l~~~i~ele~~~~-~~~~~ 150 (169)
||+|.++.+ .++.+|++...++++.+..+...+.. ++...+.+++.+...+. .+.+.
T Consensus 28 ii~~~s~gs~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~r~~~ 89 (517)
T 3pzp_A 28 IIMEATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQLQVDRFAMELEQSRNLS 89 (517)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHCCCS
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhccCcC
Confidence 567766664 45677888888888887777665532 33344445555555453 24443
No 124
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=32.77 E-value=1.9e+02 Score=25.92 Aligned_cols=43 Identities=26% Similarity=0.326 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccc
Q 030907 115 ELEALRQRDEGLARELELLRQKIEELEQLAKQRGLSGIFSFKHA 158 (169)
Q Consensus 115 ~le~L~~~~~~l~~eve~l~~~i~ele~~~~~~~~~~~~~~~~~ 158 (169)
+.++|..+..++..++..++.++.++++.+... +-.+-|.-+.
T Consensus 117 ~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~-l~~iPN~~~~ 159 (501)
T 1wle_A 117 QYQSLRARGREIRKQLTLLYPKEAQLEEQFYLR-ALRLPNQTHP 159 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTSCCCCCT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCCCCC
Confidence 334566666677777777777777777777664 3556666666
No 125
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=31.96 E-value=2e+02 Score=23.16 Aligned_cols=26 Identities=23% Similarity=0.334 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 118 ALRQRDEGLARELELLRQKIEELEQL 143 (169)
Q Consensus 118 ~L~~~~~~l~~eve~l~~~i~ele~~ 143 (169)
.|..+++.+..++..++...++|..+
T Consensus 119 ~Lh~~ie~l~eEi~~LkeEn~eLkeL 144 (209)
T 2wvr_A 119 KLHKEIEQKDNEIARLKKENKELAEV 144 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555444433
No 126
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=31.81 E-value=31 Score=21.26 Aligned_cols=26 Identities=19% Similarity=0.376 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030907 76 AAVDLIGEIFIFTVAGAAVIFEVQRSA 102 (169)
Q Consensus 76 ~GAe~lgE~fIF~Va~~li~~E~~Rs~ 102 (169)
.++-.+| ++++.+++..+++-..|.+
T Consensus 14 Ia~~vVG-vll~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 14 IISAVVG-ILLVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHH-HHHHHHHHHHHHhheehhh
Confidence 4455667 5565555555544444433
No 127
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=31.55 E-value=99 Score=19.51 Aligned_cols=26 Identities=4% Similarity=0.176 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 113 KQELEALRQRDEGLARELELLRQKIE 138 (169)
Q Consensus 113 ~~~le~L~~~~~~l~~eve~l~~~i~ 138 (169)
..+...|..+++.|..++..++..+.
T Consensus 10 ss~V~~L~~kVdqLssdV~al~~~v~ 35 (52)
T 1jcd_A 10 SSDAQTANAKADQASNDANAARSDAQ 35 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555554443
No 128
>3p8q_A GP5, head protein; virus procapsid particles, virus; 5.20A {Enterobacteria phage HK97} PDB: 3qpr_A
Probab=31.51 E-value=10 Score=32.48 Aligned_cols=31 Identities=19% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030907 117 EALRQRDEGLARELELLRQKIEELEQLAKQR 147 (169)
Q Consensus 117 e~L~~~~~~l~~eve~l~~~i~ele~~~~~~ 147 (169)
.+++.+++.+..++..++.+|+++|+.+...
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 67 (385)
T 3p8q_A 37 KQLQSDLMKVQEELTKSGTRLFDLEQKLASG 67 (385)
T ss_dssp -------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3467788999999999999999999998653
No 129
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=31.38 E-value=65 Score=20.25 Aligned_cols=25 Identities=16% Similarity=0.189 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 121 QRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 121 ~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
.-+++|+.++..|..+...|...+.
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~ 46 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELK 46 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356666666666666666555443
No 130
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=31.18 E-value=1.2e+02 Score=23.76 Aligned_cols=32 Identities=16% Similarity=0.073 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 111 IRKQELEALRQRDEGLARELELLRQKIEELEQ 142 (169)
Q Consensus 111 ~~~~~le~L~~~~~~l~~eve~l~~~i~ele~ 142 (169)
...+.++.+...+..+..++..++.++.+++.
T Consensus 40 ~~~~h~~~~~~~i~~~~~~i~~~~~~l~~l~~ 71 (228)
T 1flk_A 40 LLESQLSRHDQMLSVHDIRLADMDLRFQVLET 71 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34455556666666666666666666666553
No 131
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=31.08 E-value=62 Score=21.75 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 030907 119 LRQRDEGLARELELLRQKIEE 139 (169)
Q Consensus 119 L~~~~~~l~~eve~l~~~i~e 139 (169)
|+.++..|..+.+.++.++++
T Consensus 55 Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 55 LQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444455444444
No 132
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=31.01 E-value=2.6e+02 Score=24.15 Aligned_cols=43 Identities=26% Similarity=0.189 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccc
Q 030907 115 ELEALRQRDEGLARELELLRQKIEELEQLAKQRGLSGIFSFKHA 158 (169)
Q Consensus 115 ~le~L~~~~~~l~~eve~l~~~i~ele~~~~~~~~~~~~~~~~~ 158 (169)
+.++|..+..++..++..++.++.++++.+... +-.+-|.-|.
T Consensus 65 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ipN~~~~ 107 (421)
T 1ses_A 65 EKEALIARGKALGEEAKRLEEALREKEARLEAL-LLQVPLPPWP 107 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTCCCCCCT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCCCCC
Confidence 345667777788888888888888888888764 4556666666
No 133
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=30.85 E-value=1.3e+02 Score=20.64 Aligned_cols=32 Identities=13% Similarity=0.333 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 115 ELEALRQRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 115 ~le~L~~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
++++++.++..|......++.++.+++..+.-
T Consensus 11 ~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~ 42 (112)
T 1l8d_A 11 KKTTIEEERNEITQRIGELKNKIGDLKTAIEE 42 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555666666666655543
No 134
>3onp_A TRNA/RRNA methyltransferase (SPOU); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.90A {Rhodobacter sphaeroides}
Probab=30.74 E-value=22 Score=28.84 Aligned_cols=17 Identities=12% Similarity=0.165 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHhhh
Q 030907 87 FTVAGAAVIFEVQRSAR 103 (169)
Q Consensus 87 F~Va~~li~~E~~Rs~~ 103 (169)
-++|+++++||.+|+..
T Consensus 147 va~A~aI~lYE~~rq~~ 163 (249)
T 3onp_A 147 LAQCVLLLAYEWRRQHD 163 (249)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 36788999999999864
No 135
>3g43_E Voltage-dependent L-type calcium channel subunit alpha-1C; calmodulin-bound, coiled coil, acetylation, methylation, phosphoprotein, polymorphism; 2.10A {Homo sapiens} PDB: 3oxq_E
Probab=30.41 E-value=25 Score=24.44 Aligned_cols=16 Identities=19% Similarity=0.108 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHhhhh
Q 030907 89 VAGAAVIFEVQRSARS 104 (169)
Q Consensus 89 Va~~li~~E~~Rs~~k 104 (169)
|=++++++||||+.++
T Consensus 63 iYA~llI~d~~r~~k~ 78 (81)
T 3g43_E 63 FYATFLIQEYFRKFKK 78 (81)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3468899999999875
No 136
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=30.37 E-value=14 Score=21.74 Aligned_cols=30 Identities=27% Similarity=0.410 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 115 ELEALRQRDEGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 115 ~le~L~~~~~~l~~eve~l~~~i~ele~~~ 144 (169)
.++.++.++..|+.+.+..+.++..+++.+
T Consensus 5 ~i~avKkKiq~lq~q~d~aee~~~~~~~~l 34 (37)
T 3azd_A 5 SLEAVRRKIRSLQEQNYHLENEVARLKKLV 34 (37)
T ss_dssp -CHHHHHHHHHHHHHTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666677777777777766666665543
No 137
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=30.34 E-value=1.5e+02 Score=24.44 Aligned_cols=76 Identities=12% Similarity=0.174 Sum_probs=53.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 68 LNEEKAVQAAVDLIGEIFIFTVAGAAVIFEVQRSARS---EARKEEIRKQELEALRQRDEGLARELELLRQKIEELEQL 143 (169)
Q Consensus 68 L~Ee~Ave~GAe~lgE~fIF~Va~~li~~E~~Rs~~k---e~~Kee~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~ 143 (169)
-|-..-=..-.++.-++=.++|==.+.-.|+..--.| =..+++...+++..|++.--+|+.++...+.|++.+++.
T Consensus 149 YSl~~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~qEy 227 (242)
T 3uux_B 149 YSPSALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLEEY 227 (242)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444455666666667777666776666544443 234556677888899999999999999999999888763
No 138
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=30.19 E-value=3e+02 Score=24.60 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccc
Q 030907 118 ALRQRDEGLARELELLRQKIEELEQLAKQRGLSGIFSFKHA 158 (169)
Q Consensus 118 ~L~~~~~~l~~eve~l~~~i~ele~~~~~~~~~~~~~~~~~ 158 (169)
+|..+..+|..++..++.++.++++.+... +-.+-|.-+.
T Consensus 75 ~l~~~~~~l~~~i~~le~~~~~~~~~~~~~-l~~iPN~~~~ 114 (485)
T 3qne_A 75 DLIAEKEKLSNEKKEIIEKEAEADKNLRSK-INQVGNIVHE 114 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTSCCCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCCCCc
Confidence 455666677777777777777777777654 3555566555
No 139
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=29.68 E-value=1.4e+02 Score=20.68 Aligned_cols=30 Identities=30% Similarity=0.362 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 115 ELEALRQRDEGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 115 ~le~L~~~~~~l~~eve~l~~~i~ele~~~ 144 (169)
+-+.|..+++.+..++..++...++|..+.
T Consensus 47 EN~~Lh~~ie~l~eEi~~lk~en~eL~ela 76 (83)
T 1uii_A 47 ENEKLHKEIEQKDNEIARLKKENKELAEVA 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334577788888888888888777776654
No 140
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=29.39 E-value=1.1e+02 Score=21.54 Aligned_cols=32 Identities=25% Similarity=0.276 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 115 ELEALRQRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 115 ~le~L~~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
+...|+.++.+|+.+++.-...-+-|+.+...
T Consensus 16 RkkkL~~Ki~el~~ei~ke~~~regl~Km~~v 47 (98)
T 2ke4_A 16 QRKRLQQQLEERSRELQKEVDQREALKKMKDV 47 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467777777877777777777777766653
No 141
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=29.38 E-value=66 Score=21.84 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 115 ELEALRQRDEGLARELELLRQKIE 138 (169)
Q Consensus 115 ~le~L~~~~~~l~~eve~l~~~i~ 138 (169)
++..+..+++.+++.++-+.+++.
T Consensus 46 KLa~ln~kL~~lE~~L~iLEAkls 69 (73)
T 3pp5_A 46 KLSDLNEKLTILDRQVDYLEATFK 69 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555556666666666655554
No 142
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=29.27 E-value=1.6e+02 Score=25.02 Aligned_cols=30 Identities=13% Similarity=0.160 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 115 ELEALRQRDEGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 115 ~le~L~~~~~~l~~eve~l~~~i~ele~~~ 144 (169)
++..|+..++.++..++.|+.+|.++++.+
T Consensus 27 ~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 27 QIQELSEMWRVNQQFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555666666666555544
No 143
>2ha8_A TAR (HIV-1) RNA loop binding protein; methyltransferase, structural genomics, structural genomics consortium, SGC, RNA binding protein; HET: SAH; 1.60A {Homo sapiens}
Probab=29.27 E-value=31 Score=26.43 Aligned_cols=17 Identities=35% Similarity=0.520 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHhhh
Q 030907 87 FTVAGAAVIFEVQRSAR 103 (169)
Q Consensus 87 F~Va~~li~~E~~Rs~~ 103 (169)
-++|+++++||++|+..
T Consensus 160 vavAaaI~lye~~rq~~ 176 (184)
T 2ha8_A 160 VHVSGALLIWEYTRQQL 176 (184)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 47899999999998653
No 144
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=28.98 E-value=1.5e+02 Score=20.62 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 117 EALRQRDEGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 117 e~L~~~~~~l~~eve~l~~~i~ele~~~ 144 (169)
+.|..+++.+..++..++....+|..+.
T Consensus 41 ~~Lh~~ie~~~eEi~~Lk~en~~L~elA 68 (83)
T 1wlq_A 41 EKLHKEIEQKDSEIARLRKENKDLAEVA 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777777777777777777766555
No 145
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=28.79 E-value=46 Score=19.24 Aligned_cols=24 Identities=17% Similarity=0.389 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHH
Q 030907 86 IFTVAGAAVIFEVQRSARSEARKE 109 (169)
Q Consensus 86 IF~Va~~li~~E~~Rs~~ke~~Ke 109 (169)
.+.+..++.++=..|..+|..++.
T Consensus 8 ~~v~~~~ifYFl~iRPQ~Kr~K~~ 31 (37)
T 2rdd_B 8 MLVVFGLIFYFMILRPQQKRTKEH 31 (37)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHH
Confidence 344444555566778777655544
No 146
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=28.49 E-value=1.6e+02 Score=24.99 Aligned_cols=29 Identities=14% Similarity=0.067 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 117 EALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 117 e~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
...+.++..|+..++.++.+|.+|++.+.
T Consensus 22 ~~~~~~i~~L~~~l~~~~~~i~~l~~~i~ 50 (323)
T 1lwu_C 22 VSHDAQIQELSEMWRVNQQFVTRLQQQLV 50 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455667777777777777777776553
No 147
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=28.25 E-value=1.5e+02 Score=25.61 Aligned_cols=35 Identities=17% Similarity=0.298 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 111 IRKQELEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 111 ~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
...++++.++++.++++.+++.++.+++++++.+.
T Consensus 7 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 41 (403)
T 4etp_A 7 ALKEKIAALKEKIAALKEKIKDTELGMKELNEILI 41 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666677777777777777777777766553
No 148
>1nkz_B Light-harvesting protein B-800/850, beta chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_B* 2fkw_B* 1ijd_B*
Probab=28.21 E-value=1e+02 Score=18.61 Aligned_cols=27 Identities=15% Similarity=0.114 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 67 PLNEEKAVQAAVDLIGEIFIFTVAGAA 93 (169)
Q Consensus 67 pL~Ee~Ave~GAe~lgE~fIF~Va~~l 93 (169)
-|+|+.|-|.-+-++.=+.+|++.+.+
T Consensus 2 gLT~~EA~EfH~~~~~~~~~F~~iA~v 28 (41)
T 1nkz_B 2 TLTAEQSEELHKYVIDGTRVFLGLALV 28 (41)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999888888665543
No 149
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=28.06 E-value=1.5e+02 Score=21.26 Aligned_cols=28 Identities=29% Similarity=0.420 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 113 KQELEALRQRDEGLARELELLRQKIEEL 140 (169)
Q Consensus 113 ~~~le~L~~~~~~l~~eve~l~~~i~el 140 (169)
+++++.|+.++.+|...++....-+.++
T Consensus 17 e~e~~~l~~~~~el~~~l~~~~~~~~e~ 44 (125)
T 1joc_A 17 EGEIEKLQTKVLELQRKLDNTTAAVQEL 44 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555554444444
No 150
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=27.82 E-value=33 Score=18.85 Aligned_cols=15 Identities=33% Similarity=0.570 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 030907 125 GLARELELLRQKIEE 139 (169)
Q Consensus 125 ~l~~eve~l~~~i~e 139 (169)
.|+..+..++++|..
T Consensus 11 aleqkiaalkqkias 25 (28)
T 3ra3_A 11 ALEQKIAALKQKIAS 25 (28)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334444444433
No 151
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=27.81 E-value=1.1e+02 Score=20.87 Aligned_cols=27 Identities=19% Similarity=0.331 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 118 ALRQRDEGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 118 ~L~~~~~~l~~eve~l~~~i~ele~~~ 144 (169)
.|+.+++.+..+++.++..++.++..+
T Consensus 79 ~l~~~~~~l~~~i~~l~~~~~~l~~~~ 105 (109)
T 1r8d_A 79 ALQSQKEILMKKKQRMDEMIQTIDRTL 105 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666666666554
No 152
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=27.47 E-value=62 Score=26.83 Aligned_cols=36 Identities=19% Similarity=0.300 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 111 IRKQELEALRQRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 111 ~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
..+.+++.|..+.+.|..++..++.+|..|++.+..
T Consensus 58 eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeEler 93 (251)
T 3m9b_A 58 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDR 93 (251)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777788888888888888777765
No 153
>3kty_A Probable methyltransferase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 2.30A {Bordetella pertussis}
Probab=27.45 E-value=33 Score=25.81 Aligned_cols=16 Identities=13% Similarity=0.079 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHhh
Q 030907 87 FTVAGAAVIFEVQRSA 102 (169)
Q Consensus 87 F~Va~~li~~E~~Rs~ 102 (169)
-++|+++++||.+|+.
T Consensus 157 vs~AaaI~lye~~r~~ 172 (173)
T 3kty_A 157 VAQALQLAAWELRYAL 172 (173)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4788999999999874
No 154
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=27.28 E-value=1e+02 Score=21.15 Aligned_cols=19 Identities=21% Similarity=0.277 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 030907 117 EALRQRDEGLARELELLRQ 135 (169)
Q Consensus 117 e~L~~~~~~l~~eve~l~~ 135 (169)
|-|+++|.+|+..+..|+.
T Consensus 18 evLKe~I~EL~e~~~qLE~ 36 (78)
T 1dip_A 18 EILKEQIRELVEKNSQLER 36 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 155
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=27.21 E-value=1e+02 Score=19.51 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 111 IRKQELEALRQRDEGLARELELLR 134 (169)
Q Consensus 111 ~~~~~le~L~~~~~~l~~eve~l~ 134 (169)
.+-++.+-|+.-+.+|+.++..++
T Consensus 25 ~r~DEV~~Le~NLrEL~~ei~~~~ 48 (51)
T 1yzm_A 25 GRMDEVRTLQENLRQLQDEYDQQQ 48 (51)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHh
Confidence 334455556666666666655554
No 156
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=26.77 E-value=81 Score=21.97 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 030907 113 KQELEALRQRDEGLARELELLR 134 (169)
Q Consensus 113 ~~~le~L~~~~~~l~~eve~l~ 134 (169)
+.++++|+.++..|..++..++
T Consensus 7 ~~~i~~L~~q~~~L~~ei~~~~ 28 (85)
T 3viq_B 7 ESRVHLLEQQKEQLESSLQDAL 28 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 157
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=26.71 E-value=3.2e+02 Score=23.87 Aligned_cols=41 Identities=17% Similarity=0.300 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccc
Q 030907 117 EALRQRDEGLARELELLRQKIEELEQLAKQRGLSGIFSFKHA 158 (169)
Q Consensus 117 e~L~~~~~~l~~eve~l~~~i~ele~~~~~~~~~~~~~~~~~ 158 (169)
++|..+..++..++..++.++.++++.+... +-.+-|.-|.
T Consensus 72 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ipN~~~~ 112 (455)
T 2dq0_A 72 DELLAKSREIVKRIGELENEVEELKKKIDYY-LWRLPNITHP 112 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTSCCCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCCCCc
Confidence 3456666777777777777777777777664 4556666665
No 158
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=26.70 E-value=1.5e+02 Score=20.02 Aligned_cols=34 Identities=18% Similarity=0.267 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 109 EEIRKQELEALRQRDEGLARELELLRQKIEELEQ 142 (169)
Q Consensus 109 ee~~~~~le~L~~~~~~l~~eve~l~~~i~ele~ 142 (169)
++..-++++.+++.--.|+..+...+.|++.+++
T Consensus 37 R~ivldRlA~lEqdE~~LE~~l~~i~~rle~~qe 70 (72)
T 2xu6_A 37 KEKLLGKIANIEQNQLMLEDNLKQIDDRLDFLEE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC-------
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 3444566777777777777777777777776654
No 159
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=26.50 E-value=2.2e+02 Score=21.78 Aligned_cols=31 Identities=13% Similarity=0.157 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 115 ELEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 115 ~le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
+.+.|+.++.+-..-++.++.++.+|..++.
T Consensus 116 r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~ 146 (154)
T 2ocy_A 116 LNKRLTEQLREKDTLLDTLTLQLKNLKKVMH 146 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555566666666655543
No 160
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=26.45 E-value=96 Score=21.70 Aligned_cols=29 Identities=31% Similarity=0.381 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030907 119 LRQRDEGLARELELLRQKIEELEQLAKQR 147 (169)
Q Consensus 119 L~~~~~~l~~eve~l~~~i~ele~~~~~~ 147 (169)
+.+.+++.+..+..-+.+|+++|+.+.+.
T Consensus 10 F~~lv~~fe~rL~~Yr~~IeelE~~L~s~ 38 (93)
T 3t98_B 10 FRVLVQQFEVQLQQYRQQIEELENHLATQ 38 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44567777888888888889998888653
No 161
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=26.36 E-value=1.1e+02 Score=18.57 Aligned_cols=28 Identities=18% Similarity=0.353 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 117 EALRQRDEGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 117 e~L~~~~~~l~~eve~l~~~i~ele~~~ 144 (169)
.+|+.+..+|+..+..++.+-.=|.+.+
T Consensus 13 k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 13 KDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 3455555555555555554444444433
No 162
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=26.32 E-value=1.4e+02 Score=19.67 Aligned_cols=30 Identities=13% Similarity=0.233 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 117 EALRQRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 117 e~L~~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
+-|+.+.++++.+++.++...+.|+..+..
T Consensus 42 ~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~ 71 (99)
T 1q08_A 42 GIVQERLQEVEARIAELQSMQRSLQRLNDA 71 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666777777777766654
No 163
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=26.27 E-value=1.7e+02 Score=20.39 Aligned_cols=33 Identities=6% Similarity=0.076 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 112 RKQELEALRQRDEGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 112 ~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~ 144 (169)
..+++..|+.++..++.+++..+.++.+..+.+
T Consensus 42 ~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kL 74 (101)
T 3u1c_A 42 LEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSL 74 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666655554443
No 164
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=26.26 E-value=81 Score=26.11 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 117 EALRQRDEGLARELELLRQKIEELEQ 142 (169)
Q Consensus 117 e~L~~~~~~l~~eve~l~~~i~ele~ 142 (169)
+.|...+.++..+++.++.+++.|.+
T Consensus 71 e~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 71 SKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34666777777777777777766543
No 165
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=26.23 E-value=1.5e+02 Score=21.69 Aligned_cols=39 Identities=10% Similarity=0.170 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 107 RKEEIRKQELEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 107 ~Kee~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
+|.+.....++.++..++++...+..+...++++.+...
T Consensus 105 ~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~~~ 143 (151)
T 2zdi_C 105 KRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQKQS 143 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777888888888888888888888888876543
No 166
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=26.10 E-value=1.7e+02 Score=20.33 Aligned_cols=35 Identities=34% Similarity=0.428 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 108 KEEIRKQELEALRQRDEGLARELELLRQKIEELEQ 142 (169)
Q Consensus 108 Kee~~~~~le~L~~~~~~l~~eve~l~~~i~ele~ 142 (169)
-|....++|.+|+.....+..+++.++...+.+.+
T Consensus 19 eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~ 53 (96)
T 3q8t_A 19 EEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQ 53 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence 34455667777777777777777777777666643
No 167
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=26.04 E-value=67 Score=17.62 Aligned_cols=15 Identities=33% Similarity=0.494 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 030907 126 LARELELLRQKIEEL 140 (169)
Q Consensus 126 l~~eve~l~~~i~el 140 (169)
|..++..+..+|..|
T Consensus 12 lkqeiaaleyeiaal 26 (28)
T 3ra3_B 12 LKQEIAALEYEIAAL 26 (28)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 333344444444443
No 168
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=25.77 E-value=1.4e+02 Score=20.08 Aligned_cols=19 Identities=47% Similarity=0.538 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 030907 125 GLARELELLRQKIEELEQL 143 (169)
Q Consensus 125 ~l~~eve~l~~~i~ele~~ 143 (169)
++..-++.++-+|.+|..+
T Consensus 43 Elk~~~e~Ld~KI~eL~el 61 (72)
T 3cve_A 43 NLKTLLEILDGKIFELTEL 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHH
Confidence 3344444455555555443
No 169
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=25.77 E-value=83 Score=17.60 Aligned_cols=18 Identities=39% Similarity=0.446 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 030907 123 DEGLARELELLRQKIEEL 140 (169)
Q Consensus 123 ~~~l~~eve~l~~~i~el 140 (169)
+..|+.+...++++++||
T Consensus 8 lasleaenkqlkakveel 25 (31)
T 1p9i_A 8 LASLEAENKQLKAKVEEL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555666666666554
No 170
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=25.68 E-value=1.5e+02 Score=24.37 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 030907 114 QELEALRQRDEGLARELELLRQK 136 (169)
Q Consensus 114 ~~le~L~~~~~~l~~eve~l~~~ 136 (169)
+++.++.+++++|..+++.++.+
T Consensus 106 ~~~~~l~~~~~~L~~~~~~l~~~ 128 (357)
T 3rrk_A 106 SRAEVLGKERAALEEEIQTIELF 128 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Confidence 34444445555555555555555
No 171
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=25.49 E-value=1e+02 Score=20.97 Aligned_cols=19 Identities=21% Similarity=0.426 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 030907 117 EALRQRDEGLARELELLRQ 135 (169)
Q Consensus 117 e~L~~~~~~l~~eve~l~~ 135 (169)
..|+.++..|++.++-+.+
T Consensus 48 a~ln~KL~~LEr~L~iLEA 66 (75)
T 3p8c_E 48 ATLNEKLTALERRIEYIEA 66 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 172
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=25.39 E-value=1.7e+02 Score=21.18 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 030907 115 ELEALRQRDEGLARELELLRQKIEELEQLAKQRGLSGI 152 (169)
Q Consensus 115 ~le~L~~~~~~l~~eve~l~~~i~ele~~~~~~~~~~~ 152 (169)
.+..|+.++++|+.+++.++..+.+....+..- ..||
T Consensus 17 ~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~C-p~gw 53 (182)
T 3kqg_A 17 KASALNTKIRALQGSLENMSKLLKRQNDILQVV-SQGW 53 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCCC
Confidence 445566666666666666666655544434332 3455
No 173
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=25.35 E-value=1.4e+02 Score=19.22 Aligned_cols=33 Identities=27% Similarity=0.508 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 114 QELEALRQRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 114 ~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
++..+|+++...+...+++-+.-=++||..++.
T Consensus 17 DqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk 49 (56)
T 2w6b_A 17 DEVQELRQDNKKMKKSLEEEQRARKDLEKLVRK 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444556666543
No 174
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=25.17 E-value=1.4e+02 Score=20.61 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 115 ELEALRQRDEGLARELELLRQKIEEL 140 (169)
Q Consensus 115 ~le~L~~~~~~l~~eve~l~~~i~el 140 (169)
+|.+-+.+..+|..+++.++.++++|
T Consensus 46 kL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 46 QLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666777777777776664
No 175
>3ilk_A Uncharacterized tRNA/RRNA methyltransferase HI038; APC63004, methylase family protein, haemophilus influenzae R structural genomics; 2.01A {Haemophilus influenzae}
Probab=25.10 E-value=1.6e+02 Score=23.60 Aligned_cols=17 Identities=18% Similarity=0.206 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHhhh
Q 030907 87 FTVAGAAVIFEVQRSAR 103 (169)
Q Consensus 87 F~Va~~li~~E~~Rs~~ 103 (169)
-++|+++++||.+|+..
T Consensus 145 va~A~aI~lyE~~rq~~ 161 (244)
T 3ilk_A 145 LAMAVQLVSYELRMAFL 161 (244)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 46788999999999864
No 176
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=24.98 E-value=1.5e+02 Score=25.51 Aligned_cols=35 Identities=11% Similarity=0.191 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 111 IRKQELEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 111 ~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
..+.++++|......|+.+++.+.+..+++++.+.
T Consensus 209 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 243 (373)
T 3hhm_B 209 KLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMN 243 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44666777777777888888888888777777665
No 177
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=24.47 E-value=1.7e+02 Score=23.93 Aligned_cols=36 Identities=11% Similarity=0.249 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 111 IRKQELEALRQRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 111 ~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
...++++++.+..+..+..+..++..+++|+.-.+.
T Consensus 17 ~le~rleei~q~eq~~ekrik~ne~sL~dL~d~iRr 52 (233)
T 2yko_A 17 AAEDEINEIKREGKFREKRIKRNEQSLQEIWDYVKR 52 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 334445555555555555566666666666666543
No 178
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=24.47 E-value=1.3e+02 Score=18.39 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 119 LRQRDEGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 119 L~~~~~~l~~eve~l~~~i~ele~~~ 144 (169)
|-++++...+|++.-+.+|.++...+
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lqkKl 32 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLKKKQ 32 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 179
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=24.46 E-value=2.1e+02 Score=22.25 Aligned_cols=35 Identities=6% Similarity=0.067 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 110 EIRKQELEALRQRDEGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 110 e~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~ 144 (169)
+...++++++++++.+|+.....++..++.++...
T Consensus 82 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~~~ 116 (278)
T 1r8e_A 82 AFYTEQERQIREKLDFLSALEQTISLVKKRMKRQM 116 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455566666777777766666666666665543
No 180
>1v2x_A TRNA (GM18) methyltransferase; DEEP trefoil knot, riken structural genomics/proteomics INIT RSGI, structural genomics; HET: SAM; 1.50A {Thermus thermophilus} SCOP: c.116.1.1
Probab=24.40 E-value=42 Score=25.85 Aligned_cols=17 Identities=41% Similarity=0.624 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHhhh
Q 030907 87 FTVAGAAVIFEVQRSAR 103 (169)
Q Consensus 87 F~Va~~li~~E~~Rs~~ 103 (169)
-++|+++++||++|+..
T Consensus 153 vs~AaaI~lye~~rq~~ 169 (194)
T 1v2x_A 153 VSVAAAVILFEAQRQRL 169 (194)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 47899999999998753
No 181
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=23.81 E-value=2.4e+02 Score=25.90 Aligned_cols=36 Identities=11% Similarity=0.131 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 111 IRKQELEALRQRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 111 ~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
.+.+.+..|+.-++++..+++.|+..|+.--+.+++
T Consensus 128 nQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKg 163 (562)
T 3ghg_A 128 EKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRG 163 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344566667777777777777777777666565554
No 182
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=23.65 E-value=2.1e+02 Score=20.68 Aligned_cols=31 Identities=23% Similarity=0.199 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 113 KQELEALRQRDEGLARELELLRQKIEELEQL 143 (169)
Q Consensus 113 ~~~le~L~~~~~~l~~eve~l~~~i~ele~~ 143 (169)
......|++.+..|...-+.++.+|++||+.
T Consensus 34 ~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~ 64 (111)
T 2v66_B 34 YKQVSVLEDDLSQTRAIKEQLHKYVRELEQA 64 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456678888888888888888888888875
No 183
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=23.63 E-value=1.4e+02 Score=22.98 Aligned_cols=24 Identities=17% Similarity=-0.013 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 118 ALRQRDEGLARELELLRQKIEELE 141 (169)
Q Consensus 118 ~L~~~~~~l~~eve~l~~~i~ele 141 (169)
.++..+..-..++..++.++.++|
T Consensus 11 ~~~~~~~~~~~~~~~l~~~~~~~~ 34 (198)
T 4ghu_A 11 RHDQMLSVHDIRLADMDLRFQVLE 34 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333333333334444444444444
No 184
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=23.51 E-value=1.4e+02 Score=18.66 Aligned_cols=36 Identities=19% Similarity=0.297 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030907 112 RKQELEALRQRDEGLARELELLRQKIEELEQLAKQR 147 (169)
Q Consensus 112 ~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~~ 147 (169)
.+.++..|..+.+.|...+..-+.+|..|.+.+...
T Consensus 14 l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 14 LEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666777777788888888888888877766543
No 185
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=23.07 E-value=1.5e+02 Score=21.14 Aligned_cols=29 Identities=21% Similarity=0.337 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 111 IRKQELEALRQRDEGLARELELLRQKIEE 139 (169)
Q Consensus 111 ~~~~~le~L~~~~~~l~~eve~l~~~i~e 139 (169)
....+++.|+...+.|..+++.|..++..
T Consensus 16 ~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 16 TLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777777777777777777644
No 186
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=23.04 E-value=3.5e+02 Score=24.14 Aligned_cols=28 Identities=11% Similarity=0.100 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 112 RKQELEALRQRDEGLARELELLRQKIEE 139 (169)
Q Consensus 112 ~~~~le~L~~~~~~l~~eve~l~~~i~e 139 (169)
..++..+|.+++.+++.++..++.++++
T Consensus 76 l~~~~~~l~~~i~~le~~~~~~~~~~~~ 103 (485)
T 3qne_A 76 LIAEKEKLSNEKKEIIEKEAEADKNLRS 103 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777777777766664
No 187
>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A*
Probab=23.00 E-value=46 Score=27.30 Aligned_cols=18 Identities=11% Similarity=0.074 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 030907 87 FTVAGAAVIFEVQRSARS 104 (169)
Q Consensus 87 F~Va~~li~~E~~Rs~~k 104 (169)
-++|+++++||++|+...
T Consensus 252 vsvAaaI~lye~~rq~~~ 269 (277)
T 3nk6_A 252 VSVSVGIALHERSARNFA 269 (277)
T ss_dssp HHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 478999999999998653
No 188
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=22.98 E-value=1.9e+02 Score=20.94 Aligned_cols=34 Identities=6% Similarity=0.104 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 111 IRKQELEALRQRDEGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 111 ~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~ 144 (169)
...+++++|+...+.|...++..+..+...+..+
T Consensus 92 ~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~~~~~ 125 (142)
T 3gp4_A 92 ELKNRIDVMQEALDRLDFKIDNYDTHLIPAQEEL 125 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555555555555555554444444433
No 189
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=22.91 E-value=1.6e+02 Score=21.55 Aligned_cols=33 Identities=9% Similarity=0.307 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 114 QELEALRQRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 114 ~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
+..+-|+.+.++++.+++.++..++.|+..+..
T Consensus 95 ~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~ 127 (148)
T 3gpv_A 95 HRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAK 127 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777888888888888888887777754
No 190
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=22.86 E-value=1.7e+02 Score=22.04 Aligned_cols=30 Identities=23% Similarity=0.302 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 111 IRKQELEALRQRDEGLARELELLRQKIEEL 140 (169)
Q Consensus 111 ~~~~~le~L~~~~~~l~~eve~l~~~i~el 140 (169)
....+||.|.++++++..+++++.++.+.+
T Consensus 102 ~~laqLe~ls~qL~~ls~~v~~L~~q~~~~ 131 (140)
T 3iyn_Q 102 ALLAQLDSLTRELNVVSQQLLDLRQQVSAL 131 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346688888899999999998888765543
No 191
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=22.85 E-value=1.8e+02 Score=21.27 Aligned_cols=28 Identities=18% Similarity=0.322 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 118 ALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 118 ~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
.|+.+.+.+..+++.++..++.++..+.
T Consensus 84 ~L~~q~~~L~~~i~~l~~~l~~l~~~i~ 111 (146)
T 3hh0_A 84 QMHFQREVLLAEQERIAKVLSHMDEMTK 111 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555544
No 192
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=22.83 E-value=53 Score=22.94 Aligned_cols=14 Identities=50% Similarity=0.899 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 030907 127 ARELELLRQKIEEL 140 (169)
Q Consensus 127 ~~eve~l~~~i~el 140 (169)
...+++|+.+|.+|
T Consensus 69 n~kl~~L~~eL~eL 82 (86)
T 1cxz_B 69 SRRLDLLHQQLQEL 82 (86)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 33444444444444
No 193
>1ozj_A SMAD 3; MAD homology domain 1, DNA recognition, TGF-beta signaling, zinc-binding module, transcription/DNA complex; 2.40A {Homo sapiens} SCOP: d.164.1.1 PDB: 1mhd_A*
Probab=22.80 E-value=1.1e+02 Score=23.34 Aligned_cols=32 Identities=16% Similarity=0.285 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 030907 118 ALRQRDEGLARELELLRQKIEELEQLAKQRGLS 150 (169)
Q Consensus 118 ~L~~~~~~l~~eve~l~~~i~ele~~~~~~~~~ 150 (169)
..++.++.|.+.+++ ..++++|++++.++|.+
T Consensus 30 ~~~kai~sLvKkLK~-~~~Le~L~~AV~s~g~~ 61 (144)
T 1ozj_A 30 WCEKAVKSLVKKLKK-TGQLDELEKAITTQNVN 61 (144)
T ss_dssp HHHHHHHHHHHHHHH-TTCHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHHHHhcc-cccHHHHHHHHhCCCCC
Confidence 455667777777777 66899999999998863
No 194
>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} SCOP: c.116.1.1 d.79.3.3
Probab=22.78 E-value=43 Score=27.00 Aligned_cols=16 Identities=31% Similarity=0.466 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHhh
Q 030907 87 FTVAGAAVIFEVQRSA 102 (169)
Q Consensus 87 F~Va~~li~~E~~Rs~ 102 (169)
-++|+++++||++|+.
T Consensus 237 vsvAaaI~lye~~rq~ 252 (253)
T 1gz0_A 237 VSVATGICLFEAVRQR 252 (253)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4788999999998864
No 195
>1lgh_B LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=22.55 E-value=1.4e+02 Score=18.33 Aligned_cols=28 Identities=21% Similarity=0.253 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 66 RPLNEEKAVQAAVDLIGEIFIFTVAGAA 93 (169)
Q Consensus 66 ~pL~Ee~Ave~GAe~lgE~fIF~Va~~l 93 (169)
.-|+|+.|-|.-+-++.=+.+|++.+.+
T Consensus 6 tGLT~~EA~EfH~~~~~~~~~F~~iA~v 33 (45)
T 1lgh_B 6 SGLTEEEAIAVHDQFKTTFSAFIILAAV 33 (45)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4599999999999999888888665443
No 196
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=22.45 E-value=3e+02 Score=22.08 Aligned_cols=45 Identities=29% Similarity=0.260 Sum_probs=27.9
Q ss_pred HHHHhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 97 EVQRSARSEARKEE-IRKQELEALRQRDEGLARELELLRQKIEELE 141 (169)
Q Consensus 97 E~~Rs~~ke~~Kee-~~~~~le~L~~~~~~l~~eve~l~~~i~ele 141 (169)
|-.|-+=.++-.|. ...++++.++..+..|..+++.++.-.+..+
T Consensus 104 E~RR~AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q 149 (209)
T 2wvr_A 104 EKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQ 149 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444443333 4567788888888888877777776555443
No 197
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=22.35 E-value=48 Score=20.96 Aligned_cols=11 Identities=36% Similarity=0.516 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 030907 118 ALRQRDEGLAR 128 (169)
Q Consensus 118 ~L~~~~~~l~~ 128 (169)
+|++++++|+.
T Consensus 53 ~Le~ri~~Le~ 63 (72)
T 2er8_A 53 AIEKRFKELTR 63 (72)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33344443333
No 198
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=22.31 E-value=1.5e+02 Score=21.22 Aligned_cols=13 Identities=38% Similarity=0.345 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 030907 118 ALRQRDEGLAREL 130 (169)
Q Consensus 118 ~L~~~~~~l~~ev 130 (169)
.|+.++..|+.++
T Consensus 100 ~L~~~i~~Le~el 112 (117)
T 3kin_B 100 ALKSVIQHLEVEL 112 (117)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444333
No 199
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=22.03 E-value=1.2e+02 Score=25.78 Aligned_cols=33 Identities=15% Similarity=0.283 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 114 QELEALRQRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 114 ~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
.++..|+..++.++.+++.|+.+|.+|+..+..
T Consensus 18 ~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~~~~ 50 (319)
T 1fzc_C 18 SSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQE 50 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445556666677777777777777777765543
No 200
>1r8i_A TRAC; VIRB5, helical bundle, structural protein; 3.00A {Escherichia coli} SCOP: a.8.7.1
Probab=21.93 E-value=1.2e+02 Score=23.69 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 030907 124 EGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 124 ~~l~~eve~l~~~i~ele~~~~~ 146 (169)
.++..+++.++.+|+++++.+.+
T Consensus 18 ~q~~~Ql~~~k~Ql~q~k~qy~s 40 (213)
T 1r8i_A 18 EQMAQQLEQLKSQLETQKNMYES 40 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566666666666544
No 201
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=21.75 E-value=2.4e+02 Score=21.89 Aligned_cols=36 Identities=14% Similarity=0.210 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 111 IRKQELEALRQRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 111 ~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
..+.++++|......|..++..+.+..+++++-..+
T Consensus 100 ~LksRL~~l~~sk~~L~e~L~~q~~~~relERemns 135 (170)
T 3l4q_C 100 RLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNS 135 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445666677777777777777777777777665543
No 202
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=21.63 E-value=4e+02 Score=23.28 Aligned_cols=27 Identities=26% Similarity=0.307 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 113 KQELEALRQRDEGLARELELLRQKIEE 139 (169)
Q Consensus 113 ~~~le~L~~~~~~l~~eve~l~~~i~e 139 (169)
.++..+|.+++.+++.++..++.++++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (455)
T 2dq0_A 75 LAKSREIVKRIGELENEVEELKKKIDY 101 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666666655544
No 203
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=21.51 E-value=1.6e+02 Score=20.81 Aligned_cols=73 Identities=18% Similarity=0.209 Sum_probs=33.3
Q ss_pred CcCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 64 EIRPLNEE-KAVQAAVDLIGEIFIFTVAGAAVIFEVQRSARSEARK--EEIRKQELEALRQRDEGLARELELLRQKI 137 (169)
Q Consensus 64 ~i~pL~Ee-~Ave~GAe~lgE~fIF~Va~~li~~E~~Rs~~ke~~K--ee~~~~~le~L~~~~~~l~~eve~l~~~i 137 (169)
.+.|.+.. +.+-..--++| +++|++..+.+..-+....++..++ +.......+.++++++++..+++.++.+.
T Consensus 59 d~~P~t~~~r~~~~~~~~~G-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~le~~~ 134 (139)
T 3eff_K 59 DLYPVTLWGRLVAVVVMVAG-ITSFGLVTAALATWFVGREQERRGHFVRHSEKAAEEAYTRTTRALHERFDRLERML 134 (139)
T ss_dssp SSCCCSSHHHHHHHHHHHHH-HHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcCCCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666644 55444433333 4455555555533222222221111 11222233456666667777777666554
No 204
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=21.51 E-value=95 Score=20.82 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 030907 112 RKQELEALRQRDEGLARELELLR 134 (169)
Q Consensus 112 ~~~~le~L~~~~~~l~~eve~l~ 134 (169)
+-++.+-|+.-+.+|+.++..++
T Consensus 44 r~DEV~tLe~NLrEL~~ei~~~q 66 (69)
T 1z0k_B 44 RMDEVRTLQENLRQLQDEYDQQQ 66 (69)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHh
Confidence 34455556666666666655543
No 205
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=21.49 E-value=1.8e+02 Score=19.19 Aligned_cols=28 Identities=29% Similarity=0.356 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 116 LEALRQRDEGLARELELLRQKIEELEQL 143 (169)
Q Consensus 116 le~L~~~~~~l~~eve~l~~~i~ele~~ 143 (169)
+++.+.+....+.++..++.+|..+|.-
T Consensus 29 l~~~e~~~~~~E~ev~~L~kKiq~lE~e 56 (81)
T 1ic2_A 29 KKAAEERSKQLEDELVALQKKLKGTEDE 56 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444433
No 206
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=21.43 E-value=86 Score=19.59 Aligned_cols=34 Identities=21% Similarity=0.234 Sum_probs=18.0
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 95 IFEVQRSARSEARKEEIRKQELEALRQRDEGLARELELL 133 (169)
Q Consensus 95 ~~E~~Rs~~ke~~Kee~~~~~le~L~~~~~~l~~eve~l 133 (169)
+=+|.+++++..+ -++...|+.-+.+|..|++.|
T Consensus 13 I~~~I~qAk~~rR-----fdEV~~L~~NL~EL~~E~~~~ 46 (48)
T 3v1a_A 13 IHSFIHQAKAAGR-----MDEVRTLQENLHQLMHEYFQQ 46 (48)
T ss_dssp HHHHHHHHHTTTC-----HHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcC-----hHHHHHHHHHHHHHHHHHHhh
Confidence 3445555554333 334455666666666665543
No 207
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=21.34 E-value=1.2e+02 Score=24.69 Aligned_cols=23 Identities=17% Similarity=0.138 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 030907 118 ALRQRDEGLARELELLRQKIEEL 140 (169)
Q Consensus 118 ~L~~~~~~l~~eve~l~~~i~el 140 (169)
++..+++.+..+++.++++|+.|
T Consensus 152 ~~~~~i~ql~~En~~le~~Ie~L 174 (250)
T 2ve7_C 152 SSADKMQQLNAAHQEALMKLERL 174 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHSCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444433
No 208
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=21.33 E-value=1.6e+02 Score=18.33 Aligned_cols=17 Identities=41% Similarity=0.671 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 030907 126 LARELELLRQKIEELEQ 142 (169)
Q Consensus 126 l~~eve~l~~~i~ele~ 142 (169)
|...++.+..|++.||.
T Consensus 28 Lt~kL~~vt~rle~lEn 44 (47)
T 1aq5_A 28 LQQKLEAVAKRIEALEN 44 (47)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33333444444444443
No 209
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=21.30 E-value=1e+02 Score=21.44 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 118 ALRQRDEGLARELELLRQKIEELE 141 (169)
Q Consensus 118 ~L~~~~~~l~~eve~l~~~i~ele 141 (169)
.|+.++..|+.+...+++++.+++
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~ 28 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDAL 28 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555554443
No 210
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=21.28 E-value=1.5e+02 Score=20.29 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 030907 126 LARELELLRQKIEELEQ 142 (169)
Q Consensus 126 l~~eve~l~~~i~ele~ 142 (169)
+..-++.++-+|.+|..
T Consensus 50 lk~l~e~Ld~KI~eL~e 66 (79)
T 3cvf_A 50 VGRAAQLLDVSLFELSE 66 (79)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHH
Confidence 33334444444444443
No 211
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=21.23 E-value=2.1e+02 Score=20.50 Aligned_cols=27 Identities=15% Similarity=0.132 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 119 LRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 119 L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
.+.+++.|..++..++.++++.+..+.
T Consensus 16 ~e~e~~~l~~~~~el~~~l~~~~~~~~ 42 (125)
T 1joc_A 16 GEGEIEKLQTKVLELQRKLDNTTAAVQ 42 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555544444
No 212
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=21.05 E-value=2.2e+02 Score=23.19 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 113 KQELEALRQRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 113 ~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
.+++.+|+++++++....+....+|..+++-++.
T Consensus 12 EErIs~le~rleei~q~eq~~ekrik~ne~sL~d 45 (233)
T 2yko_A 12 EERVSAAEDEINEIKREGKFREKRIKRNEQSLQE 45 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777777777777777777766654
No 213
>1zjr_A TRNA (guanosine-2'-O-)-methyltransferase; methylase, RNA modifying enzyme, topological knot; 1.85A {Aquifex aeolicus}
Probab=20.95 E-value=53 Score=25.67 Aligned_cols=16 Identities=31% Similarity=0.578 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHhh
Q 030907 87 FTVAGAAVIFEVQRSA 102 (169)
Q Consensus 87 F~Va~~li~~E~~Rs~ 102 (169)
-++|+++++||++|+.
T Consensus 157 vsvAaaI~lye~~rq~ 172 (211)
T 1zjr_A 157 VSVATGIILYEAQRQR 172 (211)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4789999999999875
No 214
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=20.75 E-value=2.1e+02 Score=19.50 Aligned_cols=37 Identities=8% Similarity=0.145 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 110 EIRKQELEALRQRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 110 e~~~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
+..++++..|+-+++++..+++.++.+-+++=.-+-.
T Consensus 30 ~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~ 66 (83)
T 2xdj_A 30 SDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDS 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777777777777776666555543
No 215
>1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3
Probab=20.62 E-value=53 Score=26.87 Aligned_cols=17 Identities=24% Similarity=0.427 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHhhh
Q 030907 87 FTVAGAAVIFEVQRSAR 103 (169)
Q Consensus 87 F~Va~~li~~E~~Rs~~ 103 (169)
-++|+++++||++|+..
T Consensus 246 vsvAaaI~lye~~rq~~ 262 (274)
T 1ipa_A 246 VSVSAALLLYEALRQRL 262 (274)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 57899999999998754
No 216
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=20.58 E-value=1.6e+02 Score=24.16 Aligned_cols=30 Identities=27% Similarity=0.399 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 114 QELEALRQRDEGLARELELLRQKIEELEQL 143 (169)
Q Consensus 114 ~~le~L~~~~~~l~~eve~l~~~i~ele~~ 143 (169)
+.++++..++.++..++..++++++++++.
T Consensus 99 ~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~ 128 (357)
T 3rrk_A 99 AVLRPVASRAEVLGKERAALEEEIQTIELF 128 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 336677777777777777777777777776
No 217
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=20.56 E-value=89 Score=21.25 Aligned_cols=38 Identities=16% Similarity=0.254 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHh
Q 030907 109 EEIRKQELEALRQRDEGL----ARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 109 ee~~~~~le~L~~~~~~l----~~eve~l~~~i~ele~~~~~ 146 (169)
-+.....++.|+.+...| ...-..+++||..||..++.
T Consensus 9 v~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 9 VTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344556667777776544 44445677888899998876
No 218
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=20.54 E-value=1.3e+02 Score=21.21 Aligned_cols=24 Identities=25% Similarity=0.162 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 123 DEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 123 ~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
..+|+.+...++.+++++++.+..
T Consensus 9 ~~~l~~~~~~l~~~i~~lkeel~~ 32 (109)
T 2wg5_A 9 MKQLEDKVEELLSKNYHLENEVAR 32 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666654
No 219
>2rjz_A PILO protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Pseudomonas aeruginosa}
Probab=20.39 E-value=1.3e+02 Score=22.30 Aligned_cols=38 Identities=18% Similarity=0.306 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCC
Q 030907 112 RKQELEALRQRDEGLAREL---ELLRQKIEELEQLAKQRGL 149 (169)
Q Consensus 112 ~~~~le~L~~~~~~l~~ev---e~l~~~i~ele~~~~~~~~ 149 (169)
.++++++++.+.+++...+ .++-.-|+++.+.-.+.|+
T Consensus 20 l~~ql~~l~~~l~~l~~~LP~~~em~~LL~~i~~~~~~~GL 60 (147)
T 2rjz_A 20 YKAQMKEMEESFGALLRQLPSDTEVPGLLEDITRTGLGSGL 60 (147)
T ss_dssp HHHHHHHHHHHHHHHHHTTTGGGHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHhCCC
Confidence 3444444555544444433 3444445666666666665
No 220
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=20.08 E-value=1.1e+02 Score=22.17 Aligned_cols=20 Identities=20% Similarity=0.441 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 030907 125 GLARELELLRQKIEELEQLA 144 (169)
Q Consensus 125 ~l~~eve~l~~~i~ele~~~ 144 (169)
.|...++.++.+++.+..++
T Consensus 20 ~l~~~~~~l~~~l~~~~~~l 39 (182)
T 3kqg_A 20 ALNTKIRALQGSLENMSKLL 39 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
Done!