Query 030907
Match_columns 169
No_of_seqs 118 out of 226
Neff 5.4
Searched_HMMs 13730
Date Mon Mar 25 09:49:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030907.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030907hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2azeb1 e.63.1.2 (B:201-301) T 55.1 12 0.00088 25.0 5.4 31 112-142 6-36 (101)
2 d1ipaa1 c.116.1.1 (A:106-263) 55.0 3.2 0.00023 29.0 2.4 16 87-102 141-156 (158)
3 d1fxkc_ a.2.5.1 (C:) Prefoldin 53.2 18 0.0013 24.2 6.3 32 114-145 8-39 (133)
4 d1fxkc_ a.2.5.1 (C:) Prefoldin 51.7 23 0.0017 23.6 6.7 30 113-142 101-130 (133)
5 d1v2xa_ c.116.1.1 (A:) tRNA (G 51.4 2.5 0.00019 30.9 1.4 19 87-105 153-171 (191)
6 d1gz0a1 c.116.1.1 (A:78-243) R 48.6 4.6 0.00033 28.4 2.4 16 87-102 150-165 (166)
7 d2azeb1 e.63.1.2 (B:201-301) T 47.7 24 0.0018 23.4 6.0 32 115-146 2-33 (101)
8 d1mxia_ c.116.1.1 (A:) Hypothe 47.5 4.8 0.00035 27.7 2.4 17 87-103 133-149 (156)
9 d1nkpa_ a.38.1.1 (A:) Myc prot 43.6 25 0.0018 22.1 5.4 14 68-81 41-54 (88)
10 d1nkpb_ a.38.1.1 (B:) Max prot 41.3 29 0.0021 21.5 5.4 13 68-80 36-48 (83)
11 d1seta1 a.2.7.1 (A:1-110) Sery 39.7 44 0.0032 21.6 6.7 31 117-147 67-97 (110)
12 d1fxka_ a.2.5.1 (A:) Prefoldin 39.2 42 0.003 21.7 6.2 31 114-144 72-102 (107)
13 d1nkpa_ a.38.1.1 (A:) Myc prot 35.6 38 0.0028 21.1 5.3 8 64-71 31-38 (88)
14 d1nlwa_ a.38.1.1 (A:) Mad prot 30.6 50 0.0036 20.1 5.1 16 122-137 62-77 (79)
15 d1am9a_ a.38.1.1 (A:) SREBP-1a 28.3 35 0.0025 21.1 4.0 17 124-140 60-76 (80)
16 d1nlwa_ a.38.1.1 (A:) Mad prot 25.4 50 0.0036 20.1 4.4 19 123-141 56-74 (79)
17 d1t3ua_ d.244.1.1 (A:) ZapA ho 24.6 74 0.0054 19.6 6.5 13 89-101 52-64 (92)
18 d1cxzb_ a.2.6.1 (B:) Protein k 23.0 34 0.0025 22.3 3.2 23 112-134 61-83 (86)
19 d1d4ca2 c.3.1.4 (A:103-359,A:5 22.1 23 0.0016 26.4 2.5 27 74-100 295-321 (322)
20 d1fxka_ a.2.5.1 (A:) Prefoldin 20.6 1E+02 0.0074 19.6 6.3 34 113-146 7-40 (107)
No 1
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=55.13 E-value=12 Score=25.03 Aligned_cols=31 Identities=16% Similarity=0.345 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 112 RKQELEALRQRDEGLARELELLRQKIEELEQ 142 (169)
Q Consensus 112 ~~~~le~L~~~~~~l~~eve~l~~~i~ele~ 142 (169)
.+++++.|+.+.+.|...+.+.+++++.+.+
T Consensus 6 L~~El~~L~~~E~~LD~li~~~~~~L~~lte 36 (101)
T d2azeb1 6 LTQDLRQLQESEQQLDHLMNICTTQLRLLSE 36 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4555666666666666666666666666654
No 2
>d1ipaa1 c.116.1.1 (A:106-263) RrmA (RrmH), C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=54.98 E-value=3.2 Score=29.05 Aligned_cols=16 Identities=25% Similarity=0.499 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHhh
Q 030907 87 FTVAGAAVIFEVQRSA 102 (169)
Q Consensus 87 F~Va~~li~~E~~Rs~ 102 (169)
-++|+++++||++|++
T Consensus 141 vs~A~aI~lyE~~RQr 156 (158)
T d1ipaa1 141 VSVSAALLLYEALRQR 156 (158)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4688899999999976
No 3
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=53.23 E-value=18 Score=24.16 Aligned_cols=32 Identities=31% Similarity=0.451 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 114 QELEALRQRDEGLARELELLRQKIEELEQLAK 145 (169)
Q Consensus 114 ~~le~L~~~~~~l~~eve~l~~~i~ele~~~~ 145 (169)
.+++.++++++.|+.+++.++..+.+++....
T Consensus 8 ~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~ 39 (133)
T d1fxkc_ 8 AQLNIYQSQVELIQQQMEAVRATISELEILEK 39 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666666654443
No 4
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=51.73 E-value=23 Score=23.56 Aligned_cols=30 Identities=17% Similarity=0.212 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 113 KQELEALRQRDEGLARELELLRQKIEELEQ 142 (169)
Q Consensus 113 ~~~le~L~~~~~~l~~eve~l~~~i~ele~ 142 (169)
...++.+..++..+...+..+..+++++-+
T Consensus 101 ~~~~~~l~~~~~~~~~~i~~l~~~~~~l~~ 130 (133)
T d1fxkc_ 101 ESTLQKMGENLRAITDIMMKLSPQAEELLA 130 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555443
No 5
>d1v2xa_ c.116.1.1 (A:) tRNA (Gm18) methyltransferase TrmH {Thermus thermophilus [TaxId: 274]}
Probab=51.44 E-value=2.5 Score=30.88 Aligned_cols=19 Identities=37% Similarity=0.560 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHhhhhH
Q 030907 87 FTVAGAAVIFEVQRSARSE 105 (169)
Q Consensus 87 F~Va~~li~~E~~Rs~~ke 105 (169)
-++|+|+++||++|+..+.
T Consensus 153 vsvAa~I~lyE~~rq~~~~ 171 (191)
T d1v2xa_ 153 VSVAAAVILFEAQRQRLKA 171 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4688899999999976544
No 6
>d1gz0a1 c.116.1.1 (A:78-243) RlmB, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=48.56 E-value=4.6 Score=28.44 Aligned_cols=16 Identities=31% Similarity=0.466 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHhh
Q 030907 87 FTVAGAAVIFEVQRSA 102 (169)
Q Consensus 87 F~Va~~li~~E~~Rs~ 102 (169)
-++|+++++||++|++
T Consensus 150 vs~A~~I~lye~~rqr 165 (166)
T d1gz0a1 150 VSVATGICLFEAVRQR 165 (166)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcc
Confidence 4688999999999975
No 7
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=47.66 E-value=24 Score=23.43 Aligned_cols=32 Identities=19% Similarity=0.127 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 115 ELEALRQRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 115 ~le~L~~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
++..|+.+++.|..+-+.|+..|..+.+-++.
T Consensus 2 r~~~L~~El~~L~~~E~~LD~li~~~~~~L~~ 33 (101)
T d2azeb1 2 RLEGLTQDLRQLQESEQQLDHLMNICTTQLRL 33 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778889999999999999999888888875
No 8
>d1mxia_ c.116.1.1 (A:) Hypothetical tRNA/rRNA methyltransfease HI0766 (YibK homologue) {Haemophilus influenzae [TaxId: 727]}
Probab=47.51 E-value=4.8 Score=27.71 Aligned_cols=17 Identities=18% Similarity=0.266 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHhhh
Q 030907 87 FTVAGAAVIFEVQRSAR 103 (169)
Q Consensus 87 F~Va~~li~~E~~Rs~~ 103 (169)
-++|+++++||++||..
T Consensus 133 vs~A~aI~lyE~~RQ~~ 149 (156)
T d1mxia_ 133 LSNSVAVTVYEAWRQLG 149 (156)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 47889999999998753
No 9
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.60 E-value=25 Score=22.11 Aligned_cols=14 Identities=14% Similarity=0.090 Sum_probs=6.3
Q ss_pred CCHHHHHHHHHHHH
Q 030907 68 LNEEKAVQAAVDLI 81 (169)
Q Consensus 68 L~Ee~Ave~GAe~l 81 (169)
+|-..-++.+++++
T Consensus 41 ~sK~~iL~~A~~yI 54 (88)
T d1nkpa_ 41 APKVVILKKATAYI 54 (88)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 44444444444443
No 10
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.33 E-value=29 Score=21.53 Aligned_cols=13 Identities=8% Similarity=0.212 Sum_probs=5.2
Q ss_pred CCHHHHHHHHHHH
Q 030907 68 LNEEKAVQAAVDL 80 (169)
Q Consensus 68 L~Ee~Ave~GAe~ 80 (169)
+|-..-++..+++
T Consensus 36 ~sK~~iL~~A~~y 48 (83)
T d1nkpb_ 36 ASRAQILDKATEY 48 (83)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 4433334443333
No 11
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=39.73 E-value=44 Score=21.59 Aligned_cols=31 Identities=29% Similarity=0.318 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030907 117 EALRQRDEGLARELELLRQKIEELEQLAKQR 147 (169)
Q Consensus 117 e~L~~~~~~l~~eve~l~~~i~ele~~~~~~ 147 (169)
+++..+...+..++..++.++.+++..+...
T Consensus 67 ~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ 97 (110)
T d1seta1 67 EALIARGKALGEEAKRLEEALREKEARLEAL 97 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666677777777777777777777653
No 12
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=39.18 E-value=42 Score=21.72 Aligned_cols=31 Identities=26% Similarity=0.457 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 114 QELEALRQRDEGLARELELLRQKIEELEQLA 144 (169)
Q Consensus 114 ~~le~L~~~~~~l~~eve~l~~~i~ele~~~ 144 (169)
.+++.++.+++.+...++.++.+++++..-+
T Consensus 72 ~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~l 102 (107)
T d1fxka_ 72 EKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555554444
No 13
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.60 E-value=38 Score=21.12 Aligned_cols=8 Identities=25% Similarity=0.459 Sum_probs=4.0
Q ss_pred CcCCCCHH
Q 030907 64 EIRPLNEE 71 (169)
Q Consensus 64 ~i~pL~Ee 71 (169)
-+|++++.
T Consensus 31 llP~~~~~ 38 (88)
T d1nkpa_ 31 QIPELENN 38 (88)
T ss_dssp TCGGGTTC
T ss_pred hCCCCCCC
Confidence 34555543
No 14
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.61 E-value=50 Score=20.09 Aligned_cols=16 Identities=25% Similarity=0.437 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 030907 122 RDEGLARELELLRQKI 137 (169)
Q Consensus 122 ~~~~l~~eve~l~~~i 137 (169)
+.+.|..+...|+.++
T Consensus 62 ~~~~L~~~~~~L~~~l 77 (79)
T d1nlwa_ 62 QIDQLQREQRHLKRQL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3334444444444443
No 15
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.35 E-value=35 Score=21.07 Aligned_cols=17 Identities=24% Similarity=0.243 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 030907 124 EGLARELELLRQKIEEL 140 (169)
Q Consensus 124 ~~l~~eve~l~~~i~el 140 (169)
+.|..++..++..+.++
T Consensus 60 ~~L~~e~~~lk~~~~~~ 76 (80)
T d1am9a_ 60 QKLKQENLSLRTAVHKS 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33444444444444443
No 16
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.45 E-value=50 Score=20.09 Aligned_cols=19 Identities=16% Similarity=0.377 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 030907 123 DEGLARELELLRQKIEELE 141 (169)
Q Consensus 123 ~~~l~~eve~l~~~i~ele 141 (169)
+..+..+.+.+..+.++|.
T Consensus 56 ~~~l~~~~~~L~~~~~~L~ 74 (79)
T d1nlwa_ 56 DRKAVHQIDQLQREQRHLK 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 17
>d1t3ua_ d.244.1.1 (A:) ZapA homologue PA5227 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=24.62 E-value=74 Score=19.56 Aligned_cols=13 Identities=8% Similarity=0.225 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHh
Q 030907 89 VAGAAVIFEVQRS 101 (169)
Q Consensus 89 Va~~li~~E~~Rs 101 (169)
.++.-+..|+...
T Consensus 52 maaLnla~e~~~~ 64 (92)
T d1t3ua_ 52 MAALNITHDLLHR 64 (92)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444455666543
No 18
>d1cxzb_ a.2.6.1 (B:) Protein kinase c-like 1, pkn/prk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.99 E-value=34 Score=22.31 Aligned_cols=23 Identities=22% Similarity=0.173 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 030907 112 RKQELEALRQRDEGLARELELLR 134 (169)
Q Consensus 112 ~~~~le~L~~~~~~l~~eve~l~ 134 (169)
...++.....++.+|..+++++.
T Consensus 61 V~~eL~~sN~kL~~L~~eL~eLn 83 (86)
T d1cxzb_ 61 VELLLRGSSRRLDLLHQQLQELH 83 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444444444444443
No 19
>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}
Probab=22.09 E-value=23 Score=26.36 Aligned_cols=27 Identities=11% Similarity=0.140 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030907 74 VQAAVDLIGEIFIFTVAGAAVIFEVQR 100 (169)
Q Consensus 74 ve~GAe~lgE~fIF~Va~~li~~E~~R 100 (169)
=.+|.+++.|.++|+-.+|--..+|.|
T Consensus 295 nrlg~~~~~e~~v~g~~ag~~aa~~~~ 321 (322)
T d1d4ca2 295 NRLGGNAISDIVTYGRIAGASAAKFAK 321 (322)
T ss_dssp SCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhh
Confidence 357899999999999999999999876
No 20
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=20.61 E-value=1e+02 Score=19.64 Aligned_cols=34 Identities=12% Similarity=0.296 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030907 113 KQELEALRQRDEGLARELELLRQKIEELEQLAKQ 146 (169)
Q Consensus 113 ~~~le~L~~~~~~l~~eve~l~~~i~ele~~~~~ 146 (169)
..++..++.++..+...+..+..++.|.+.++..
T Consensus 7 ~~~~q~lq~el~~~~~q~~~le~q~~E~~~vl~e 40 (107)
T d1fxka_ 7 LAQFQQLQQQAQAISVQKQTVEMQINETQKALEE 40 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666666666654
Done!