BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030908
(169 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UX8|A Chain A, X-Ray Structure Of Truncated Oxygen-Avid Haemoglobin From
Bacillus Subtilis
Length = 132
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 28 FRKLGLQTFINLSTNFYTRVYDDEEEWFRSIFANSNKEEAIQNQYEFFVQRMGGPPLYSQ 87
+ +G + L FY RV + IF S+ E + Q +F Q +GGPPLY++
Sbjct: 9 YEAIGEELLSQLVDTFYERVAS--HPLLKPIFP-SDLTETARKQKQFLTQYLGGPPLYTE 65
Query: 88 RKGHPALIGRHRPFPVTHQAAERWLHHMQIALD 120
GHP L RH PFP+T++ A+ WL M+ A+D
Sbjct: 66 EHGHPMLRARHLPFPITNERADAWLSCMKDAMD 98
>pdb|2BKM|A Chain A, Crystal Structure Of The Truncated Hemoglobin From
Geobacillus Stearothermophilus
pdb|2BKM|B Chain B, Crystal Structure Of The Truncated Hemoglobin From
Geobacillus Stearothermophilus
Length = 128
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 32 GLQTFINLSTNFYTRVYDDEEEWFRSIFANSNKEEAIQNQYEFFVQRMGGPPLYSQRKGH 91
G +T L FY RV + R IF + E A Q +F Q +GGPPLY+ GH
Sbjct: 12 GEETVAKLVEAFYRRVAAHPD--LRPIFPDDLTETA-HKQKQFLTQYLGGPPLYTAEHGH 68
Query: 92 PALIGRHRPFPVTHQAAERWLHHMQIALD 120
P L RH F +T + AE WL M+ A+D
Sbjct: 69 PMLRARHLRFEITPKRAEAWLACMRAAMD 97
>pdb|2BMM|A Chain A, X-Ray Structure Of A Novel Thermostable Hemoglobin From
The Actinobacterium Thermobifida Fusca
Length = 123
Score = 59.7 bits (143), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 32 GLQTFINLSTNFYTRVYDDEEEWFRSIFANSNKEEAIQNQYEFFVQRMGGPPLYSQRKGH 91
G +TF L+ FY V D R ++ + A + F +Q GGP YS+R+GH
Sbjct: 9 GEETFTRLARRFYEGVAADPV--LRPMYPEEDLGPAEERLRLFLMQYWGGPRTYSERRGH 66
Query: 92 PALIGRHRPFPVTHQAAERWLHHMQIALDSTPEIDADSKIKMMNFFRHTAFFLV 145
P L RH P+ + + +RWL HM+ A+D + A + ++ + + A+ +V
Sbjct: 67 PRLRMRHFPYRIGAEERDRWLTHMRAAVDDL-ALPAHLEQQLWEYLVYAAYAMV 119
>pdb|1NGK|A Chain A, Crystallographic Structure Of Mycobacterium Tuberculosis
Hemoglobin O
pdb|1NGK|B Chain B, Crystallographic Structure Of Mycobacterium Tuberculosis
Hemoglobin O
pdb|1NGK|C Chain C, Crystallographic Structure Of Mycobacterium Tuberculosis
Hemoglobin O
pdb|1NGK|D Chain D, Crystallographic Structure Of Mycobacterium Tuberculosis
Hemoglobin O
pdb|1NGK|E Chain E, Crystallographic Structure Of Mycobacterium Tuberculosis
Hemoglobin O
pdb|1NGK|F Chain F, Crystallographic Structure Of Mycobacterium Tuberculosis
Hemoglobin O
pdb|1NGK|G Chain G, Crystallographic Structure Of Mycobacterium Tuberculosis
Hemoglobin O
pdb|1NGK|H Chain H, Crystallographic Structure Of Mycobacterium Tuberculosis
Hemoglobin O
pdb|1NGK|I Chain I, Crystallographic Structure Of Mycobacterium Tuberculosis
Hemoglobin O
pdb|1NGK|J Chain J, Crystallographic Structure Of Mycobacterium Tuberculosis
Hemoglobin O
pdb|1NGK|K Chain K, Crystallographic Structure Of Mycobacterium Tuberculosis
Hemoglobin O
pdb|1NGK|L Chain L, Crystallographic Structure Of Mycobacterium Tuberculosis
Hemoglobin O
Length = 128
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 4/116 (3%)
Query: 32 GLQTFINLSTNFYTRVYDDEEEWFRSIFANSNKEEAIQNQYEFFVQRMGGPPLYSQRKGH 91
G +TF + + FY +V +DE R ++ + A + F Q GGP YS+++GH
Sbjct: 11 GAKTFDAIVSRFYAQVAEDEV--LRRVYPEDDLAGAEERLRMFLEQYWGGPRTYSEQRGH 68
Query: 92 PALIGRHRPFPVTHQAAERWLHHMQIALDS--TPEIDADSKIKMMNFFRHTAFFLV 145
P L RH PF ++ + WL M A+ S + +D + + +++++ A LV
Sbjct: 69 PRLRMRHAPFRISLIERDAWLRCMHTAVASIDSETLDDEHRRELLDYLEMAAHSLV 124
>pdb|2QRW|A Chain A, Crystal Stucture Of Mycobacterium Tuberculosis Trhbo Wg8f
Mutant
pdb|2QRW|B Chain B, Crystal Stucture Of Mycobacterium Tuberculosis Trhbo Wg8f
Mutant
pdb|2QRW|C Chain C, Crystal Stucture Of Mycobacterium Tuberculosis Trhbo Wg8f
Mutant
pdb|2QRW|D Chain D, Crystal Stucture Of Mycobacterium Tuberculosis Trhbo Wg8f
Mutant
pdb|2QRW|E Chain E, Crystal Stucture Of Mycobacterium Tuberculosis Trhbo Wg8f
Mutant
pdb|2QRW|F Chain F, Crystal Stucture Of Mycobacterium Tuberculosis Trhbo Wg8f
Mutant
pdb|2QRW|G Chain G, Crystal Stucture Of Mycobacterium Tuberculosis Trhbo Wg8f
Mutant
pdb|2QRW|H Chain H, Crystal Stucture Of Mycobacterium Tuberculosis Trhbo Wg8f
Mutant
pdb|2QRW|I Chain I, Crystal Stucture Of Mycobacterium Tuberculosis Trhbo Wg8f
Mutant
pdb|2QRW|J Chain J, Crystal Stucture Of Mycobacterium Tuberculosis Trhbo Wg8f
Mutant
pdb|2QRW|K Chain K, Crystal Stucture Of Mycobacterium Tuberculosis Trhbo Wg8f
Mutant
pdb|2QRW|L Chain L, Crystal Stucture Of Mycobacterium Tuberculosis Trhbo Wg8f
Mutant
Length = 128
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 4/116 (3%)
Query: 32 GLQTFINLSTNFYTRVYDDEEEWFRSIFANSNKEEAIQNQYEFFVQRMGGPPLYSQRKGH 91
G +TF + + FY +V +DE R ++ + A + F Q GGP YS+++GH
Sbjct: 11 GAKTFDAIVSRFYAQVAEDE--VLRRVYPEDDLAGAEERLRMFLEQYWGGPRTYSEQRGH 68
Query: 92 PALIGRHRPFPVTHQAAERWLHHMQIALDS--TPEIDADSKIKMMNFFRHTAFFLV 145
P L RH PF ++ + +L M A+ S + +D + + +++++ A LV
Sbjct: 69 PRLRMRHAPFRISLIERDAFLRCMHTAVASIDSETLDDEHRRELLDYLEMAAHSLV 124
>pdb|2XYK|A Chain A, Group Ii 2-On-2 Hemoglobin From The Plant Pathogen
Agrobacterium Tumefaciens
pdb|2XYK|B Chain B, Group Ii 2-On-2 Hemoglobin From The Plant Pathogen
Agrobacterium Tumefaciens
Length = 133
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 72 YEFFVQRMGGPPLYSQRKGHPALIGRHRPFPVTHQAAERWLHHMQIALDSTPE 124
Y++ +GGPP+Y ++ GHP L RH P+ + WL + A+D T E
Sbjct: 54 YDYLTGYLGGPPVYVEKHGHPMLRRRHFVAPIGPAERDEWLLCFRRAMDETIE 106
>pdb|1IDR|A Chain A, Crystal Structure Of The Truncated-Hemoglobin-N From
Mycobacterium Tuberculosis
pdb|1IDR|B Chain B, Crystal Structure Of The Truncated-Hemoglobin-N From
Mycobacterium Tuberculosis
pdb|1S56|A Chain A, Crystal Structure Of "truncated" Hemoglobin N (Hbn) From
Mycobacterium Tuberculosis, Soaked With Xe Atoms
pdb|1S56|B Chain B, Crystal Structure Of "truncated" Hemoglobin N (Hbn) From
Mycobacterium Tuberculosis, Soaked With Xe Atoms
pdb|1S61|A Chain A, Crystal Structure Of "truncated" Hemoglobin N (Hbn) From
Mycobacterium Tuberculosis, Soaked With Butyl-Isocyanide
pdb|1S61|B Chain B, Crystal Structure Of "truncated" Hemoglobin N (Hbn) From
Mycobacterium Tuberculosis, Soaked With Butyl-Isocyanide
pdb|1RTE|A Chain A, X-Ray Structure Of Cyanide Derivative Of Truncated
Hemoglobin N (Trhbn) From Mycobacterium Tuberculosis
pdb|1RTE|B Chain B, X-Ray Structure Of Cyanide Derivative Of Truncated
Hemoglobin N (Trhbn) From Mycobacterium Tuberculosis
Length = 136
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 14/94 (14%)
Query: 26 NLFRKLGLQTFINLST-NFYTRVYDDEEEWFRSIFANSNKEEAIQNQYEFFVQRMGGPPL 84
+++ K+G I + +FY RV D++ + F+ +N Q EFF +GGP
Sbjct: 14 SIYDKIGGHEAIEVVVEDFYVRVLADDQ--LSAFFSGTNMSRLKGKQVEFFAAALGGPEP 71
Query: 85 YSQRKGHPALIGRHRPFPVTHQAAERWLHHMQIA 118
Y+ P HQ +HH +
Sbjct: 72 YTG-----------APMKQVHQGRGITMHHFSLV 94
>pdb|2GKM|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Trhbn
Tyrb10phe Mutant
pdb|2GKM|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Trhbn
Tyrb10phe Mutant
Length = 136
Score = 34.3 bits (77), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 14/94 (14%)
Query: 26 NLFRKLGLQTFINLST-NFYTRVYDDEEEWFRSIFANSNKEEAIQNQYEFFVQRMGGPPL 84
+++ K+G I + +F+ RV D++ + F+ +N Q EFF +GGP
Sbjct: 14 SIYDKIGGHEAIEVVVEDFFVRVLADDQ--LSAFFSGTNMSRLKGKQVEFFAAALGGPEP 71
Query: 85 YSQRKGHPALIGRHRPFPVTHQAAERWLHHMQIA 118
Y+ P HQ +HH +
Sbjct: 72 YTG-----------APMKQVHQGRGITMHHFSLV 94
>pdb|2GLN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Trhbn,
Glne11ala Mutant
pdb|2GLN|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Trhbn,
Glne11ala Mutant
Length = 136
Score = 33.5 bits (75), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 14/93 (15%)
Query: 26 NLFRKLGLQTFINLST-NFYTRVYDDEEEWFRSIFANSNKEEAIQNQYEFFVQRMGGPPL 84
+++ K+G I + +FY RV D++ + F+ +N EFF +GGP
Sbjct: 14 SIYDKIGGHEAIEVVVEDFYVRVLADDQ--LSAFFSGTNMSRLKGKAVEFFAAALGGPEP 71
Query: 85 YSQRKGHPALIGRHRPFPVTHQAAERWLHHMQI 117
Y+ P HQ +HH +
Sbjct: 72 YTG-----------APMKQVHQGRGITMHHFSL 93
>pdb|2GKN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Trhbn,
Glne11val Mutant
pdb|2GKN|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Trhbn,
Glne11val Mutant
Length = 136
Score = 33.1 bits (74), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 14/94 (14%)
Query: 26 NLFRKLGLQTFINLST-NFYTRVYDDEEEWFRSIFANSNKEEAIQNQYEFFVQRMGGPPL 84
+++ K+G I + +FY RV D++ + F+ +N EFF +GGP
Sbjct: 14 SIYDKIGGHEAIEVVVEDFYVRVLADDQ--LSAFFSGTNMSRLKGKVVEFFAAALGGPEP 71
Query: 85 YSQRKGHPALIGRHRPFPVTHQAAERWLHHMQIA 118
Y+ P HQ +HH +
Sbjct: 72 YTG-----------APMKQVHQGRGITMHHFSLV 94
>pdb|2GL3|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Trhbn,
Tyrb10phe Glne11val Mutant
pdb|2GL3|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Trhbn,
Tyrb10phe Glne11val Mutant
Length = 136
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 14/94 (14%)
Query: 26 NLFRKLGLQTFINLST-NFYTRVYDDEEEWFRSIFANSNKEEAIQNQYEFFVQRMGGPPL 84
+++ K+G I + +F+ RV D++ + F+ +N EFF +GGP
Sbjct: 14 SIYDKIGGHEAIEVVVEDFFVRVLADDQ--LSAFFSGTNMSRLKGKVVEFFAAALGGPEP 71
Query: 85 YSQRKGHPALIGRHRPFPVTHQAAERWLHHMQIA 118
Y+ P HQ +HH +
Sbjct: 72 YTG-----------APMKQVHQGRGITMHHFSLV 94
>pdb|3AQ8|A Chain A, Crystal Structure Of Truncated Hemoglobin From
Tetrahymena Pyriformis, Q46e Mutant, Fe(Iii) Form
pdb|3AQ8|B Chain B, Crystal Structure Of Truncated Hemoglobin From
Tetrahymena Pyriformis, Q46e Mutant, Fe(Iii) Form
Length = 121
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 27 LFRKLGLQTFINLSTN-FYTRVYDDEEEWFRSIFANSNKEEAIQNQYEFFVQRMGGPPLY 85
++ KLG + + + FY +V DE + F N++ + + Q +F +GGP Y
Sbjct: 7 IYEKLGGENAMKAAVPLFYKKVLADER--VKHFFKNTDMDHETKQQTDFLTMLLGGPNHY 64
Query: 86 SQR 88
+
Sbjct: 65 KGK 67
>pdb|3AQ5|A Chain A, Crystal Structure Of Truncated Hemoglobin From
Tetrahymena Pyriformis, Fe(Ii)-O2 Form
pdb|3AQ5|B Chain B, Crystal Structure Of Truncated Hemoglobin From
Tetrahymena Pyriformis, Fe(Ii)-O2 Form
pdb|3AQ6|A Chain A, Crystal Structure Of Truncated Hemoglobin From
Tetrahymena Pyriformis, Fe(Iii) Form
pdb|3AQ6|B Chain B, Crystal Structure Of Truncated Hemoglobin From
Tetrahymena Pyriformis, Fe(Iii) Form
Length = 121
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 27 LFRKLGLQTFINLSTN-FYTRVYDDEEEWFRSIFANSNKEEAIQNQYEFFVQRMGGPPLY 85
++ KLG + + + FY +V DE + F N++ + + Q +F +GGP Y
Sbjct: 7 IYEKLGGENAMKAAVPLFYKKVLADER--VKHFFKNTDMDHQTKQQTDFLTMLLGGPNHY 64
Query: 86 SQR 88
+
Sbjct: 65 KGK 67
>pdb|3AQ9|A Chain A, Crystal Structure Of Truncated Hemoglobin From
Tetrahymena Pyriformis, Q50e Mutant, Fe(Iii) Form
pdb|3AQ9|B Chain B, Crystal Structure Of Truncated Hemoglobin From
Tetrahymena Pyriformis, Q50e Mutant, Fe(Iii) Form
Length = 121
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 27 LFRKLGLQTFINLSTN-FYTRVYDDEEEWFRSIFANSNKEEAIQNQYEFFVQRMGGPPLY 85
++ KLG + + + FY +V DE + F N++ + + + +F +GGP Y
Sbjct: 7 IYEKLGGENAMKAAVPLFYKKVLADER--VKHFFKNTDMDHQTKQETDFLTMLLGGPNHY 64
Query: 86 SQR 88
+
Sbjct: 65 KGK 67
>pdb|3AQ7|A Chain A, Crystal Structure Of Truncated Hemoglobin From
Tetrahymena Pyriformis, Y25f Mutant, Fe(Iii) Form
pdb|3AQ7|B Chain B, Crystal Structure Of Truncated Hemoglobin From
Tetrahymena Pyriformis, Y25f Mutant, Fe(Iii) Form
Length = 121
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 27 LFRKLGLQTFINLSTN-FYTRVYDDEEEWFRSIFANSNKEEAIQNQYEFFVQRMGGPPLY 85
++ KLG + + + F+ +V DE + F N++ + + Q +F +GGP Y
Sbjct: 7 IYEKLGGENAMKAAVPLFFKKVLADER--VKHFFKNTDMDHQTKQQTDFLTMLLGGPNHY 64
Query: 86 SQR 88
+
Sbjct: 65 KGK 67
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,390,801
Number of Sequences: 62578
Number of extensions: 208284
Number of successful extensions: 441
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 432
Number of HSP's gapped (non-prelim): 18
length of query: 169
length of database: 14,973,337
effective HSP length: 92
effective length of query: 77
effective length of database: 9,216,161
effective search space: 709644397
effective search space used: 709644397
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)