BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030908
(169 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O31607|TRHBO_BACSU Group 2 truncated hemoglobin YjbI OS=Bacillus subtilis (strain 168)
GN=yjbI PE=1 SV=1
Length = 132
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 28 FRKLGLQTFINLSTNFYTRVYDDEEEWFRSIFANSNKEEAIQNQYEFFVQRMGGPPLYSQ 87
+ +G + L FY RV + IF S+ E + Q +F Q +GGPPLY++
Sbjct: 9 YEAIGEELLSQLVDTFYERVAS--HPLLKPIFP-SDLTETARKQKQFLTQYLGGPPLYTE 65
Query: 88 RKGHPALIGRHRPFPVTHQAAERWLHHMQIALD 120
GHP L RH PFP+T++ A+ WL M+ A+D
Sbjct: 66 EHGHPMLRARHLPFPITNERADAWLSCMKDAMD 98
>sp|P0A595|TRHBO_MYCTU Group 2 truncated hemoglobin GlbO OS=Mycobacterium tuberculosis
GN=glbO PE=1 SV=1
Length = 128
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 4/116 (3%)
Query: 32 GLQTFINLSTNFYTRVYDDEEEWFRSIFANSNKEEAIQNQYEFFVQRMGGPPLYSQRKGH 91
G +TF + + FY +V +DE R ++ + A + F Q GGP YS+++GH
Sbjct: 11 GAKTFDAIVSRFYAQVAEDEV--LRRVYPEDDLAGAEERLRMFLEQYWGGPRTYSEQRGH 68
Query: 92 PALIGRHRPFPVTHQAAERWLHHMQIALDS--TPEIDADSKIKMMNFFRHTAFFLV 145
P L RH PF ++ + WL M A+ S + +D + + +++++ A LV
Sbjct: 69 PRLRMRHAPFRISLIERDAWLRCMHTAVASIDSETLDDEHRRELLDYLEMAAHSLV 124
>sp|P0A596|TRHBO_MYCBO Group 2 truncated hemoglobin GlbO OS=Mycobacterium bovis (strain
ATCC BAA-935 / AF2122/97) GN=glbO PE=3 SV=1
Length = 128
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 4/116 (3%)
Query: 32 GLQTFINLSTNFYTRVYDDEEEWFRSIFANSNKEEAIQNQYEFFVQRMGGPPLYSQRKGH 91
G +TF + + FY +V +DE R ++ + A + F Q GGP YS+++GH
Sbjct: 11 GAKTFDAIVSRFYAQVAEDEV--LRRVYPEDDLAGAEERLRMFLEQYWGGPRTYSEQRGH 68
Query: 92 PALIGRHRPFPVTHQAAERWLHHMQIALDS--TPEIDADSKIKMMNFFRHTAFFLV 145
P L RH PF ++ + WL M A+ S + +D + + +++++ A LV
Sbjct: 69 PRLRMRHAPFRISLIERDAWLRCMHTAVASIDSETLDDEHRRELLDYLEMAAHSLV 124
>sp|Q9CC59|TRHBO_MYCLE Group 2 truncated hemoglobin GlbO OS=Mycobacterium leprae (strain
TN) GN=glbO PE=3 SV=1
Length = 128
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
Query: 32 GLQTFINLSTNFYTRVYDDEEEWFRSIFANSNKEEAIQNQYEFFVQRMGGPPLYSQRKGH 91
G +TF + + FY +V E+E R ++ + A + F Q GGP YS ++GH
Sbjct: 11 GAETFKAIVSRFYAQV--PEDEILRELYPADDLAGAEERLRMFLEQYWGGPRTYSSQRGH 68
Query: 92 PALIGRHRPFPVTHQAAERWLHHMQIALDSTPE--IDADSKIKMMNFFRHTAFFLV 145
P L RH PF +T + WL M A+ S +D + + +++++ A LV
Sbjct: 69 PRLRMRHAPFRITAIERDAWLRCMHTAVASIDSHTLDNEHRRELLDYLEMAAHSLV 124
>sp|Q740T9|TRHBN_MYCPA Group 1 truncated hemoglobin GlbN OS=Mycobacterium paratuberculosis
(strain ATCC BAA-968 / K-10) GN=glbN PE=3 SV=1
Length = 136
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 28/76 (36%), Gaps = 13/76 (17%)
Query: 42 NFYTRVYDDEEEWFRSIFANSNKEEAIQNQYEFFVQRMGGPPLYSQRKGHPALIGRHRPF 101
NFY RV DE+ F +N Q EFF +GGP Y+ P
Sbjct: 31 NFYVRVLADEQ--LSGFFTGTNMNRLKGKQVEFFAAALGGPHPYTG-----------APM 77
Query: 102 PVTHQAAERWLHHMQI 117
HQ +HH +
Sbjct: 78 KQVHQGRGITMHHFGL 93
>sp|P0A592|TRHBN_MYCTU Group 1 truncated hemoglobin GlbN OS=Mycobacterium tuberculosis
GN=glbN PE=1 SV=1
Length = 136
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 14/94 (14%)
Query: 26 NLFRKLGLQTFINLST-NFYTRVYDDEEEWFRSIFANSNKEEAIQNQYEFFVQRMGGPPL 84
+++ K+G I + +FY RV D++ + F+ +N Q EFF +GGP
Sbjct: 14 SIYDKIGGHEAIEVVVEDFYVRVLADDQ--LSAFFSGTNMSRLKGKQVEFFAAALGGPEP 71
Query: 85 YSQRKGHPALIGRHRPFPVTHQAAERWLHHMQIA 118
Y+ P HQ +HH +
Sbjct: 72 YTG-----------APMKQVHQGRGITMHHFSLV 94
>sp|P0A594|TRHBN_MYCSM Group 1 truncated hemoglobin GlbN OS=Mycobacterium smegmatis
GN=glbN PE=3 SV=1
Length = 136
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 14/94 (14%)
Query: 26 NLFRKLGLQTFINLST-NFYTRVYDDEEEWFRSIFANSNKEEAIQNQYEFFVQRMGGPPL 84
+++ K+G I + +FY RV D++ + F+ +N Q EFF +GGP
Sbjct: 14 SIYDKIGGHEAIEVVVEDFYVRVLADDQ--LSAFFSGTNMSRLKGKQVEFFAAALGGPEP 71
Query: 85 YSQRKGHPALIGRHRPFPVTHQAAERWLHHMQIA 118
Y+ P HQ +HH +
Sbjct: 72 YTG-----------APMKQVHQGRGITMHHFSLV 94
>sp|P0A593|TRHBN_MYCBO Group 1 truncated hemoglobin GlbN OS=Mycobacterium bovis (strain
ATCC BAA-935 / AF2122/97) GN=glbN PE=1 SV=1
Length = 136
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 14/94 (14%)
Query: 26 NLFRKLGLQTFINLST-NFYTRVYDDEEEWFRSIFANSNKEEAIQNQYEFFVQRMGGPPL 84
+++ K+G I + +FY RV D++ + F+ +N Q EFF +GGP
Sbjct: 14 SIYDKIGGHEAIEVVVEDFYVRVLADDQ--LSAFFSGTNMSRLKGKQVEFFAAALGGPEP 71
Query: 85 YSQRKGHPALIGRHRPFPVTHQAAERWLHHMQIA 118
Y+ P HQ +HH +
Sbjct: 72 YTG-----------APMKQVHQGRGITMHHFSLV 94
>sp|Q03459|TRHBN_TETTH Group 1 truncated hemoglobin OS=Tetrahymena thermophila PE=2 SV=1
Length = 121
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 27 LFRKLGLQTFINLSTN-FYTRVYDDEEEWFRSIFANSNKEEAIQNQYEFFVQRMGGPPLY 85
+F KLG Q ++ + FY +V D+ + F N+N E + Q +F +GGP Y
Sbjct: 7 VFEKLGGQAAMHAAVPLFYKKVLADDR--VKHYFKNTNMEHQAKQQEDFLTMLLGGPNHY 64
Query: 86 SQR 88
+
Sbjct: 65 KGK 67
>sp|Q2RL78|ADDB_MOOTA ATP-dependent helicase/deoxyribonuclease subunit B OS=Moorella
thermoacetica (strain ATCC 39073) GN=addB PE=3 SV=1
Length = 1151
Score = 31.2 bits (69), Expect = 3.0, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 87 QRKGHPA-LIGRHRPFPVTHQAAERWLHH 114
Q GH A L+GR RP P Q RWLH
Sbjct: 711 QAAGHLARLLGRGRPLPPLWQEVYRWLHQ 739
>sp|P48776|T23O_MOUSE Tryptophan 2,3-dioxygenase OS=Mus musculus GN=Tdo2 PE=1 SV=2
Length = 406
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 49 DDEEEWFRSIFANSNKEEAIQNQYEFFVQRMGGPPLYSQRKGHPALIGRHRPFPVTHQAA 108
D+EE+ ++ ++K I Y + + L S+ KG+ I F +THQA
Sbjct: 22 DNEEDRAQTGVNRASKGGLIYGNYLQLEKILNAQELQSEVKGNK--IHDEHLFIITHQAY 79
Query: 109 ERWLHHMQIALDSTPEIDADSKIK 132
E W + LDS EI + ++
Sbjct: 80 ELWFKQILWELDSVREIFQNGHVR 103
>sp|P21643|T23O_RAT Tryptophan 2,3-dioxygenase OS=Rattus norvegicus GN=Tdo2 PE=2 SV=1
Length = 406
Score = 30.8 bits (68), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 49 DDEEEWFRSIFANSNKEEAIQNQYEFFVQRMGGPPLYSQRKGHPALIGRHRPFPVTHQAA 108
D+EE+ ++ ++K I Y + + L S+ KG+ I F +THQA
Sbjct: 22 DNEEDGAQTGVNRASKGGLIYGDYLQLEKILNAQELQSEIKGNK--IHDEHLFIITHQAY 79
Query: 109 ERWLHHMQIALDSTPEIDADSKIK 132
E W + LDS EI + ++
Sbjct: 80 ELWFKQILWELDSVREIFQNGHVR 103
>sp|Q5EBG2|T23O_XENTR Tryptophan 2,3-dioxygenase OS=Xenopus tropicalis GN=tdo2 PE=2 SV=1
Length = 406
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 79 MGGPPLYSQRKGHPALIGRHRPFPVTHQAAERWLHHMQIALDSTPEIDADSKIK 132
+ L S++KG+ I F VTHQA E W + LDS EI + ++
Sbjct: 52 LNAQELQSEKKGNK--IHDEHLFIVTHQAYELWFKQILWELDSVREIFQNGHVR 103
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.133 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,411,650
Number of Sequences: 539616
Number of extensions: 2654225
Number of successful extensions: 5045
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 5038
Number of HSP's gapped (non-prelim): 16
length of query: 169
length of database: 191,569,459
effective HSP length: 109
effective length of query: 60
effective length of database: 132,751,315
effective search space: 7965078900
effective search space used: 7965078900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)