BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030909
(169 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 117 bits (294), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 85/152 (55%), Gaps = 26/152 (17%)
Query: 13 MVEAQLPPGFRFHPRDDELVCDYLMKKVTHTNESI-LLAAVDLNKCEPWDIP-------- 63
+ + LPPGFRF+P D+EL+ YL +K + S+ L+A +DL K +PW +P
Sbjct: 12 LTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEK 71
Query: 64 --------------GLRTNRATASGYWKATGKDRAILRKGSLVGMRKTLVFYRGRAPKGK 109
G R NR SGYWKATG D+ I +G VG++K LVFY G+APKG
Sbjct: 72 EWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGT 131
Query: 110 KTEWVMHEFRLEGPFANSPKASSLKIGCCVEC 141
KT W+MHE+RL P S + S K+ V C
Sbjct: 132 KTNWIMHEYRLIEP---SRRNGSTKLDDWVLC 160
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 117 bits (294), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 85/152 (55%), Gaps = 26/152 (17%)
Query: 13 MVEAQLPPGFRFHPRDDELVCDYLMKKVTHTNESI-LLAAVDLNKCEPWDIP-------- 63
+ + LPPGFRF+P D+EL+ YL +K + S+ L+A +DL K +PW +P
Sbjct: 15 LTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEK 74
Query: 64 --------------GLRTNRATASGYWKATGKDRAILRKGSLVGMRKTLVFYRGRAPKGK 109
G R NR SGYWKATG D+ I +G VG++K LVFY G+APKG
Sbjct: 75 EWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGT 134
Query: 110 KTEWVMHEFRLEGPFANSPKASSLKIGCCVEC 141
KT W+MHE+RL P S + S K+ V C
Sbjct: 135 KTNWIMHEYRLIEP---SRRNGSTKLDDWVLC 163
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 117 bits (293), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/130 (45%), Positives = 77/130 (59%), Gaps = 23/130 (17%)
Query: 14 VEAQLPPGFRFHPRDDELVCDYLMKKVTHTNESI-LLAAVDLNKCEPWDIP--------- 63
E LPPGFRFHP DDELV YL +K + ++A VDL K +PWD+P
Sbjct: 11 AELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGARE 70
Query: 64 -------------GLRTNRATASGYWKATGKDRAILRKGSLVGMRKTLVFYRGRAPKGKK 110
G R NRA +GYWKATG D+ + +G +G++K LVFY G+AP+G K
Sbjct: 71 WYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVK 130
Query: 111 TEWVMHEFRL 120
T+W+MHE+RL
Sbjct: 131 TDWIMHEYRL 140
>pdb|1TVF|A Chain A, Crystal Structure Of Penicillin-Binding Protein 4 (Pbp4)
From Staphylococcus Aureus
pdb|1TVF|B Chain B, Crystal Structure Of Penicillin-Binding Protein 4 (Pbp4)
From Staphylococcus Aureus
Length = 369
Score = 30.0 bits (66), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 31/86 (36%), Gaps = 6/86 (6%)
Query: 79 TGKDRAILRKGSLVGMRKTLVFYRGRAPKGKKTEWVMHEFRLEGPFANSPKASSLKIGCC 138
T +D AIL + K L F + AP + F LEG + P LK G
Sbjct: 190 TARDYAILDLHVIKETPKILDFTKQLAPTTHAVTYYTFNFSLEGAKMSLPGTDGLKTGSS 249
Query: 139 VEC------FTKREKFLANRAWEAAA 158
TKR KF N+ A
Sbjct: 250 DTANYNHTITTKRGKFRINQVIMGAG 275
>pdb|3HUM|A Chain A, Crystal Structure Of Penicillin Binding Protein 4 From
Staphylococcus Aureus Col In Complex With Cefotaxime
pdb|3HUM|B Chain B, Crystal Structure Of Penicillin Binding Protein 4 From
Staphylococcus Aureus Col In Complex With Cefotaxime
pdb|3HUN|A Chain A, Crystal Structure Of Penicillin Binding Protein 4 From
Staphylococcus Aureus Col In Complex With Ampicillin
pdb|3HUN|B Chain B, Crystal Structure Of Penicillin Binding Protein 4 From
Staphylococcus Aureus Col In Complex With Ampicillin
Length = 453
Score = 30.0 bits (66), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 31/86 (36%), Gaps = 6/86 (6%)
Query: 79 TGKDRAILRKGSLVGMRKTLVFYRGRAPKGKKTEWVMHEFRLEGPFANSPKASSLKIGCC 138
T +D AIL + K L F + AP + F LEG + P LK G
Sbjct: 226 TARDYAILDLHVIKETPKILDFTKQLAPTTHAVTYYTFNFSLEGAKMSLPGTDGLKTGSS 285
Query: 139 VEC------FTKREKFLANRAWEAAA 158
TKR KF N+ A
Sbjct: 286 DTANYNHTITTKRGKFRINQVIMGAG 311
>pdb|2XA7|B Chain B, Ap2 Clathrin Adaptor Core In Active Complex With Cargo
Peptides
Length = 592
Score = 28.1 bits (61), Expect = 2.6, Method: Composition-based stats.
Identities = 9/34 (26%), Positives = 24/34 (70%), Gaps = 3/34 (8%)
Query: 24 FHPRDD---ELVCDYLMKKVTHTNESILLAAVDL 54
++P+DD + +C+ + +++H N +++L+AV +
Sbjct: 229 YNPKDDREAQSICERVTPRLSHANSAVVLSAVKV 262
>pdb|2VGL|B Chain B, Ap2 Clathrin Adaptor Core
pdb|2JKR|B Chain B, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKR|E Chain E, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKT|B Chain B, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
pdb|2JKT|E Chain E, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
Length = 591
Score = 28.1 bits (61), Expect = 2.6, Method: Composition-based stats.
Identities = 9/34 (26%), Positives = 24/34 (70%), Gaps = 3/34 (8%)
Query: 24 FHPRDD---ELVCDYLMKKVTHTNESILLAAVDL 54
++P+DD + +C+ + +++H N +++L+AV +
Sbjct: 229 YNPKDDREAQSICERVTPRLSHANSAVVLSAVKV 262
>pdb|2F4P|A Chain A, Crystal Structure Of A Cupin-Like Protein (Tm1010) From
Thermotoga Maritima Msb8 At 1.90 A Resolution
pdb|2F4P|B Chain B, Crystal Structure Of A Cupin-Like Protein (Tm1010) From
Thermotoga Maritima Msb8 At 1.90 A Resolution
pdb|2F4P|C Chain C, Crystal Structure Of A Cupin-Like Protein (Tm1010) From
Thermotoga Maritima Msb8 At 1.90 A Resolution
pdb|2F4P|D Chain D, Crystal Structure Of A Cupin-Like Protein (Tm1010) From
Thermotoga Maritima Msb8 At 1.90 A Resolution
Length = 147
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 72 ASGYWKATGKDRAILRKGSLVGMRKTLVFYRGRAP 106
G+++ GK IL+KG +V + +V + G AP
Sbjct: 77 GKGFYQERGKPARILKKGDVVEIPPNVVHWHGAAP 111
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.135 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,855,370
Number of Sequences: 62578
Number of extensions: 192285
Number of successful extensions: 513
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 501
Number of HSP's gapped (non-prelim): 10
length of query: 169
length of database: 14,973,337
effective HSP length: 92
effective length of query: 77
effective length of database: 9,216,161
effective search space: 709644397
effective search space used: 709644397
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)