Query 030909
Match_columns 169
No_of_seqs 110 out of 989
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 09:52:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030909.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030909hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ut7_A No apical meristem prot 100.0 7.7E-50 2.6E-54 313.4 12.4 134 12-145 11-168 (171)
2 3ulx_A Stress-induced transcri 100.0 1.1E-49 3.9E-54 313.0 11.6 132 14-145 11-171 (174)
3 3kcw_A Immunomodulatory protei 52.6 45 0.0015 23.6 6.2 44 114-169 91-134 (134)
4 1ldd_A APC2WHB, anaphase promo 44.5 10 0.00035 25.0 1.7 25 18-43 36-61 (74)
5 4ffb_C Protein STU2; tubulin f 39.0 11 0.00036 29.6 1.3 18 152-169 261-278 (278)
6 3d8d_A Amyloid beta A4 precurs 30.6 47 0.0016 24.6 3.6 37 133-169 110-146 (148)
7 2oh5_A Polyhedrin, C-polyhedri 28.8 48 0.0016 25.4 3.4 26 75-100 142-168 (248)
8 2y7p_A LYSR-type regulatory pr 28.0 44 0.0015 24.2 3.1 36 134-169 182-218 (218)
9 2j5u_A MREC protein; bacterial 23.9 26 0.0009 27.9 1.2 31 139-169 225-255 (255)
10 3g21_A GAG polyprotein, capsid 22.8 40 0.0014 22.3 1.7 14 25-38 63-76 (77)
11 3dct_B Nuclear receptor coacti 22.6 38 0.0013 16.7 1.2 12 26-38 3-14 (21)
12 2khx_A Ribonuclease 3; drosha, 22.5 69 0.0024 20.9 3.0 12 112-123 20-31 (85)
13 4euo_A ABC transporter, substr 21.7 35 0.0012 26.7 1.5 20 150-169 300-319 (320)
14 3qf7_D MRE11; ABC-ATPase, ATPa 21.5 35 0.0012 20.2 1.1 20 150-169 31-50 (50)
15 2ztj_A Homocitrate synthase; ( 21.0 21 0.0007 30.1 0.0 53 112-169 330-382 (382)
16 2jln_A MHP1; hydantoin, transp 20.9 21 0.00071 31.0 0.0 21 149-169 480-500 (501)
17 3rhf_A Putative polyphosphate 20.7 29 0.00099 28.5 0.9 34 19-52 101-138 (289)
18 3dz1_A Dihydrodipicolinate syn 20.7 37 0.0013 27.6 1.6 18 18-37 109-126 (313)
19 2ph0_A Uncharacterized protein 20.6 56 0.0019 24.6 2.4 15 133-147 130-144 (174)
20 4dox_A Coat protein; all helix 20.6 38 0.0013 26.9 1.5 26 17-42 154-179 (226)
No 1
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=7.7e-50 Score=313.36 Aligned_cols=134 Identities=45% Similarity=0.821 Sum_probs=114.5
Q ss_pred ccccCCCCCceEECCChHHHHHHHHhhhhcCCCCC-ceeeeccCCCCCCCCCC----------------------Ccccc
Q 030909 12 RMVEAQLPPGFRFHPRDDELVCDYLMKKVTHTNES-ILLAAVDLNKCEPWDIP----------------------GLRTN 68 (169)
Q Consensus 12 ~~~~~~LP~G~RF~PTDeELI~~YL~~ki~g~~~~-~~I~~~Dvy~~~Pw~L~----------------------g~R~~ 68 (169)
...++.|||||||+|||||||.|||++|+.|.+++ .+|.++|||.+|||+|| |.|.+
T Consensus 11 ~~~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g~~ewyFFs~r~~k~~~g~R~~ 90 (171)
T 1ut7_A 11 PLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPN 90 (171)
T ss_dssp -CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC-------CC
T ss_pred cccccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcCCccEEEEeccccccCCCCccc
Confidence 34578899999999999999999999999998876 78999999999999998 56789
Q ss_pred cccCCceEeecCCceEEeeCCeEeEEEEEeeeeecCCCCCCccCeEEEEEEeCCCCCCC-CCCCCCeEEEEEEeecCc
Q 030909 69 RATASGYWKATGKDRAILRKGSLVGMRKTLVFYRGRAPKGKKTEWVMHEFRLEGPFANS-PKASSLKIGCCVECFTKR 145 (169)
Q Consensus 69 R~~~~G~Wk~~g~~~~I~~~g~~iG~kr~l~F~~~~~~~~~kt~W~M~EY~l~~~~~~~-~~~~~~~VlCrI~~k~~~ 145 (169)
|++++|+||++|+++.|..++.+||+|++|+||.++++++.+|+|+||||+|....... .....++||||||+|+..
T Consensus 91 R~t~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~~k~~~ 168 (171)
T 1ut7_A 91 RVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSS 168 (171)
T ss_dssp EEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEEECC--
T ss_pred ccCCCCEEeccCCCceEEecCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccCcccCCCEEEEEEEEcCCC
Confidence 99999999999999999999999999999999999999999999999999998765321 123467899999999764
No 2
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=1.1e-49 Score=313.01 Aligned_cols=132 Identities=45% Similarity=0.856 Sum_probs=116.1
Q ss_pred ccCCCCCceEECCChHHHHHHHHhhhhcCCCCC-ceeeeccCCCCCCCCCC----------------------Ccccccc
Q 030909 14 VEAQLPPGFRFHPRDDELVCDYLMKKVTHTNES-ILLAAVDLNKCEPWDIP----------------------GLRTNRA 70 (169)
Q Consensus 14 ~~~~LP~G~RF~PTDeELI~~YL~~ki~g~~~~-~~I~~~Dvy~~~Pw~L~----------------------g~R~~R~ 70 (169)
.++.|||||||+|||||||.|||++|+.|.+++ .+|.++|||.++||+|| |.|.+|+
T Consensus 11 ~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g~~ewYFFs~r~~ky~~g~R~nR~ 90 (174)
T 3ulx_A 11 AELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPNRA 90 (174)
T ss_dssp STTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSCSSEEEEEEECCC-----CCSCEE
T ss_pred cccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccCCceEEEEeccccccCCCCCceee
Confidence 367899999999999999999999999998776 79999999999999998 5678999
Q ss_pred cCCceEeecCCceEEeeCCeEeEEEEEeeeeecCCCCCCccCeEEEEEEeCCCCCCC------CCCCCCeEEEEEEeecC
Q 030909 71 TASGYWKATGKDRAILRKGSLVGMRKTLVFYRGRAPKGKKTEWVMHEFRLEGPFANS------PKASSLKIGCCVECFTK 144 (169)
Q Consensus 71 ~~~G~Wk~~g~~~~I~~~g~~iG~kr~l~F~~~~~~~~~kt~W~M~EY~l~~~~~~~------~~~~~~~VlCrI~~k~~ 144 (169)
+++|+||++|+++.|..+|.+||+|++|+||.++++++.+|+|+||||+|.++.... ....+++||||||+|++
T Consensus 91 t~~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~K~~ 170 (174)
T 3ulx_A 91 AGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKKN 170 (174)
T ss_dssp ETTEEEEECSCCEEECCSSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEEESCC
T ss_pred cCCceEccCCCCcEEeeCCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEEcCC
Confidence 999999999999999998999999999999999999999999999999998764321 11245789999999975
Q ss_pred c
Q 030909 145 R 145 (169)
Q Consensus 145 ~ 145 (169)
.
T Consensus 171 ~ 171 (174)
T 3ulx_A 171 E 171 (174)
T ss_dssp -
T ss_pred C
Confidence 3
No 3
>3kcw_A Immunomodulatory protein; FNIII, immune system; 2.00A {Ganoderma microsporum} PDB: 3f3h_A
Probab=52.59 E-value=45 Score=23.63 Aligned_cols=44 Identities=14% Similarity=0.123 Sum_probs=12.7
Q ss_pred EEEEEEeCCCCCCCCCCCCCeEEEEEEeecCchhhhhhhHHHHHHHhhhhhcccCC
Q 030909 114 VMHEFRLEGPFANSPKASSLKIGCCVECFTKREKFLANRAWEAAAMTTQALHHSHH 169 (169)
Q Consensus 114 ~M~EY~l~~~~~~~~~~~~~~VlCrI~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (169)
.++-|.+..+.. +++.+..-.+-. ++...|++-.+....|||||
T Consensus 91 TIQV~VvdPdtg------n~fiiAqWnyle------qkliseedlnsavdhhhhhh 134 (134)
T 3kcw_A 91 TIQVYVIDPDTG------NNFIVAQWNYLE------QKLISEEDLNSAVDHHHHHH 134 (134)
T ss_dssp CEEEEEECTTTC------CEEEEEEEC-----------------------------
T ss_pred eEEEEEEcCCCC------CceEeeehhhHH------HHhccHhhhhhhhhccccCC
Confidence 467787764432 366776655432 24455666677777777776
No 4
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=44.52 E-value=10 Score=24.98 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=21.4
Q ss_pred CCCceEECC-ChHHHHHHHHhhhhcCC
Q 030909 18 LPPGFRFHP-RDDELVCDYLMKKVTHT 43 (169)
Q Consensus 18 LP~G~RF~P-TDeELI~~YL~~ki~g~ 43 (169)
.|.|+.|.. |++||-. ||..++...
T Consensus 36 ~~~~~~~~~it~~eL~~-fL~~~v~e~ 61 (74)
T 1ldd_A 36 VPKDWGYNRITLQQLEG-YLNTLADEG 61 (74)
T ss_dssp SCGGGCCTTCCHHHHHH-HHHHHHHTT
T ss_pred CCCCCCCCcCCHHHHHH-HHHHHHhCC
Confidence 367899998 9999977 999999883
No 5
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=38.99 E-value=11 Score=29.57 Aligned_cols=18 Identities=28% Similarity=0.390 Sum_probs=5.0
Q ss_pred hHHHHHHHhhhhhcccCC
Q 030909 152 RAWEAAAMTTQALHHSHH 169 (169)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~ 169 (169)
+.......-++|.|||||
T Consensus 261 ~~~~~~~~~~~A~~~~~~ 278 (278)
T 4ffb_C 261 ELEKKRSQEEEAHHHHHH 278 (278)
T ss_dssp HHHHHHHHTCCC------
T ss_pred hHHHHHHhhhhhhccccC
Confidence 333334344445555554
No 6
>3d8d_A Amyloid beta A4 precursor protein-binding family 1; alpha-beta structure, phosphotyrosine binding domain; 2.20A {Homo sapiens} PDB: 3d8e_A 3d8f_A
Probab=30.64 E-value=47 Score=24.63 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=20.9
Q ss_pred CeEEEEEEeecCchhhhhhhHHHHHHHhhhhhcccCC
Q 030909 133 LKIGCCVECFTKREKFLANRAWEAAAMTTQALHHSHH 169 (169)
Q Consensus 133 ~~VlCrI~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (169)
..--|.+|+=....+.+.+...+.=.-.-..++||||
T Consensus 110 ~~~~CHvFrCe~~a~~Ia~al~~~c~~~~~~~~~~~~ 146 (148)
T 3d8d_A 110 QMLKCHVFRCEAPAKNIATSLHEICSKIMAELEHHHH 146 (148)
T ss_dssp CCEEEEEEEESSCHHHHHHHHHHHHHHHHHTC-----
T ss_pred cceEeEEEEcCCchHHHHHHHHHHHHHHHHHHhhhcc
Confidence 4588999997766766776666654433344444433
No 7
>2oh5_A Polyhedrin, C-polyhedrin; beta barrel, intracellular crystal, nucleotide binding, STRU protein, RNA binding protein; HET: GTP ATP CTP; 1.98A {Bombyx mori cypovirus 1} PDB: 2oh6_A* 2oh7_A*
Probab=28.79 E-value=48 Score=25.38 Aligned_cols=26 Identities=38% Similarity=0.645 Sum_probs=20.8
Q ss_pred eEeecCC-ceEEeeCCeEeEEEEEeee
Q 030909 75 YWKATGK-DRAILRKGSLVGMRKTLVF 100 (169)
Q Consensus 75 ~Wk~~g~-~~~I~~~g~~iG~kr~l~F 100 (169)
-|.++|- -++|..+|++||+...|..
T Consensus 142 pweatgikyrki~~dgeivgyshyfel 168 (248)
T 2oh5_A 142 PWEATGIKYRKIKRDGEIVGYSHYFEL 168 (248)
T ss_dssp SCBCCGGGCEEEEETTEEEEEEEEEEC
T ss_pred CccccCceEEEeeecceEeeeeeeeec
Confidence 3667775 4778889999999988876
No 8
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=28.03 E-value=44 Score=24.24 Aligned_cols=36 Identities=14% Similarity=-0.060 Sum_probs=16.3
Q ss_pred eEEEEEEeecCchhhhhhhHHH-HHHHhhhhhcccCC
Q 030909 134 KIGCCVECFTKREKFLANRAWE-AAAMTTQALHHSHH 169 (169)
Q Consensus 134 ~VlCrI~~k~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 169 (169)
.-+|-++.+.+......+..++ .......|.|||||
T Consensus 182 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 218 (218)
T 2y7p_A 182 IAINLFWHAKYNRDPGNMWLRQLFVELFSEAHHHHHH 218 (218)
T ss_dssp EEEEEEEEGGGTTCHHHHHHHHHHHHHHCCTTTC---
T ss_pred ccEEEEEccccCCChHHHHHHHHHHHHHHhhhhccCC
Confidence 3566666665432223333333 44555666666665
No 9
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=23.90 E-value=26 Score=27.88 Aligned_cols=31 Identities=13% Similarity=0.108 Sum_probs=4.6
Q ss_pred EEeecCchhhhhhhHHHHHHHhhhhhcccCC
Q 030909 139 VECFTKREKFLANRAWEAAAMTTQALHHSHH 169 (169)
Q Consensus 139 I~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (169)
|..........++..-++.+--++..|||||
T Consensus 225 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (255)
T 2j5u_A 225 LKRSAEAGTTDDDTTSSDTTGGQGSHHHHHH 255 (255)
T ss_dssp EEECSCCCCCC--------------------
T ss_pred EecCCccccccccccccccCCCCCcccccCC
Confidence 3344444444455555555555555566665
No 10
>3g21_A GAG polyprotein, capsid protein; alpha-helical bundle, virion, viral protein, retrovirus; 0.90A {Rous sarcoma virus} PDB: 3g1i_A 3g28_A 3g29_A 3g26_A 3g0v_A
Probab=22.76 E-value=40 Score=22.33 Aligned_cols=14 Identities=14% Similarity=0.095 Sum_probs=10.9
Q ss_pred CCChHHHHHHHHhh
Q 030909 25 HPRDDELVCDYLMK 38 (169)
Q Consensus 25 ~PTDeELI~~YL~~ 38 (169)
.|+.+|||.|.|.+
T Consensus 63 ~~~~~e~ik~~~~~ 76 (77)
T 3g21_A 63 LTTPGEIIKYVLDR 76 (77)
T ss_dssp CCSHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHcc
Confidence 47889999976654
No 11
>3dct_B Nuclear receptor coactivator 1; FXR, GW4064, alpha-helical sandwich, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: 064; 2.50A {Homo sapiens} PDB: 3dcu_B* 3hc5_B* 3hc6_B* 3rvf_B*
Probab=22.61 E-value=38 Score=16.71 Aligned_cols=12 Identities=33% Similarity=0.794 Sum_probs=8.7
Q ss_pred CChHHHHHHHHhh
Q 030909 26 PRDDELVCDYLMK 38 (169)
Q Consensus 26 PTDeELI~~YL~~ 38 (169)
+.|.+|+. ||.-
T Consensus 3 ~kdhqllr-ylld 14 (21)
T 3dct_B 3 SKDHQLLR-YLLD 14 (26)
T ss_pred hhHHHHHH-HHHc
Confidence 67889988 5543
No 12
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}
Probab=22.51 E-value=69 Score=20.94 Aligned_cols=12 Identities=8% Similarity=-0.078 Sum_probs=7.8
Q ss_pred CeEEEEEEeCCC
Q 030909 112 EWVMHEFRLEGP 123 (169)
Q Consensus 112 ~W~M~EY~l~~~ 123 (169)
.|..-+|.+...
T Consensus 20 ~~~~p~Y~~~~~ 31 (85)
T 2khx_A 20 EPDIPLYKTLQT 31 (85)
T ss_dssp CCCCCCEEECCC
T ss_pred CCCCceEEEEEe
Confidence 455668888653
No 13
>4euo_A ABC transporter, substrate binding protein (polya; class D of PBP, GABA-binding, transport protein; 1.28A {Agrobacterium tumefaciens} PDB: 4eq7_A
Probab=21.72 E-value=35 Score=26.73 Aligned_cols=20 Identities=30% Similarity=0.270 Sum_probs=11.0
Q ss_pred hhhHHHHHHHhhhhhcccCC
Q 030909 150 ANRAWEAAAMTTQALHHSHH 169 (169)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~ 169 (169)
....|.+.-...||-|||||
T Consensus 300 ~~~~~~~r~~~~~~~~~~~~ 319 (320)
T 4euo_A 300 HRDEIGERWYAWQAKHHHHH 319 (320)
T ss_dssp THHHHHHHHHHHHHC-----
T ss_pred hHHHHHHHHHHHhhhhcccC
Confidence 35567777788888888887
No 14
>3qf7_D MRE11; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima}
Probab=21.51 E-value=35 Score=20.20 Aligned_cols=20 Identities=20% Similarity=0.403 Sum_probs=6.4
Q ss_pred hhhHHHHHHHhhhhhcccCC
Q 030909 150 ANRAWEAAAMTTQALHHSHH 169 (169)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~ 169 (169)
-.+..++.--+..+.|||||
T Consensus 31 ~~ell~evkkseaghhhhhh 50 (50)
T 3qf7_D 31 LDELLDEVKKSEAGHHHHHH 50 (50)
T ss_dssp HHHHHHHHHHC---------
T ss_pred HHHHHHHHHHhhccccccCC
Confidence 34566666566666666665
No 15
>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A*
Probab=20.95 E-value=21 Score=30.13 Aligned_cols=53 Identities=15% Similarity=0.105 Sum_probs=0.0
Q ss_pred CeEEEEEEeCCCCCCCCCCCCCeEEEEEEeecCchhhhhhhHHHHHHHhhhhhcccCC
Q 030909 112 EWVMHEFRLEGPFANSPKASSLKIGCCVECFTKREKFLANRAWEAAAMTTQALHHSHH 169 (169)
Q Consensus 112 ~W~M~EY~l~~~~~~~~~~~~~~VlCrI~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (169)
-+++.|+.+..+... ...++-+|+......+-....+.....-...|.|||||
T Consensus 330 ~~~l~~~g~~~~~~~-----~~~~~~~vk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (382)
T 2ztj_A 330 KARAEELGLHYGEEE-----LHRVTQHIKALADRGQLTLEELDRILREWITAHHHHHH 382 (382)
T ss_dssp ----------------------------------------------------------
T ss_pred HHHHHHhCCCCCHHH-----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhhcccCC
Confidence 355566665432211 22355555544333333344444444445556666665
No 16
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=20.88 E-value=21 Score=31.02 Aligned_cols=21 Identities=29% Similarity=0.356 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHhhhhhcccCC
Q 030909 149 LANRAWEAAAMTTQALHHSHH 169 (169)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~ 169 (169)
...+..+++.+-.+..|||||
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~ 500 (501)
T 2jln_A 480 TANTKEQNQPAGGRGSHHHHH 500 (501)
T ss_dssp ---------------------
T ss_pred ccchhhcCCCCCCCCcccccC
Confidence 333444444455555555554
No 17
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=20.70 E-value=29 Score=28.51 Aligned_cols=34 Identities=21% Similarity=0.438 Sum_probs=25.1
Q ss_pred CCceEE----CCChHHHHHHHHhhhhcCCCCCceeeec
Q 030909 19 PPGFRF----HPRDDELVCDYLMKKVTHTNESILLAAV 52 (169)
Q Consensus 19 P~G~RF----~PTDeELI~~YL~~ki~g~~~~~~I~~~ 52 (169)
|.||+. .||++|+-..||.+.....|..+-|.-.
T Consensus 101 PRg~~V~a~~~Pt~eE~~~~ylwR~~~~lP~~G~I~IF 138 (289)
T 3rhf_A 101 PQGVQLTAFKAPTDEEKSHDFLWRIEKQVPAAGMVGVF 138 (289)
T ss_dssp GGGEEEEECCSCCHHHHTSCTTHHHHTTCCCTTCEEEE
T ss_pred cCceEEEECCCCChhhhcCCHHHHHHHhCCCCCeEEEE
Confidence 567776 5999999999999988875554444433
No 18
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=20.70 E-value=37 Score=27.59 Aligned_cols=18 Identities=17% Similarity=0.277 Sum_probs=13.3
Q ss_pred CCCceEECCChHHHHHHHHh
Q 030909 18 LPPGFRFHPRDDELVCDYLM 37 (169)
Q Consensus 18 LP~G~RF~PTDeELI~~YL~ 37 (169)
+|| | |.||+++|+.||-.
T Consensus 109 ~~P-~-~~~s~~~l~~~f~~ 126 (313)
T 3dz1_A 109 APP-P-SLRTDEQITTYFRQ 126 (313)
T ss_dssp CCC-T-TCCSHHHHHHHHHH
T ss_pred CCC-C-CCCCHHHHHHHHHH
Confidence 566 3 56999999996643
No 19
>2ph0_A Uncharacterized protein; Q6D2T7, ERWCT, NESG, EWR41, structural genomics, PSI-2, protein structure initiative; 1.85A {Pectobacterium carotovorum}
Probab=20.62 E-value=56 Score=24.59 Aligned_cols=15 Identities=0% Similarity=-0.374 Sum_probs=10.7
Q ss_pred CeEEEEEEeecCchh
Q 030909 133 LKIGCCVECFTKREK 147 (169)
Q Consensus 133 ~~VlCrI~~k~~~~~ 147 (169)
...+-|||.......
T Consensus 130 G~ai~Kif~~r~~~~ 144 (174)
T 2ph0_A 130 GAAMFKIFLGRDSHR 144 (174)
T ss_dssp SCEEEEEECCBCTTS
T ss_pred CCEEEEEEeccCCCc
Confidence 349999998765443
No 20
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=20.60 E-value=38 Score=26.90 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=17.5
Q ss_pred CCCCceEECCChHHHHHHHHhhhhcC
Q 030909 17 QLPPGFRFHPRDDELVCDYLMKKVTH 42 (169)
Q Consensus 17 ~LP~G~RF~PTDeELI~~YL~~ki~g 42 (169)
..+-|..+.||++|+|-+=..+++.-
T Consensus 154 ~P~~GLiR~PT~~E~iA~~t~K~iaL 179 (226)
T 4dox_A 154 QPPSGLTRSPTQEERIANATNKQVHL 179 (226)
T ss_dssp CCTTCCSSCCCHHHHHHHHTC-----
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 34569999999999999766665544
Done!