Query 030910
Match_columns 169
No_of_seqs 197 out of 1557
Neff 11.3
Searched_HMMs 46136
Date Fri Mar 29 06:25:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030910.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030910hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15130 spermidine N1-acetylt 100.0 7.2E-31 1.6E-35 171.6 19.1 167 1-169 1-168 (186)
2 PRK10151 ribosomal-protein-L7/ 100.0 1.2E-30 2.6E-35 169.7 19.0 165 2-168 6-177 (179)
3 PRK10809 ribosomal-protein-S5- 100.0 1.2E-29 2.7E-34 166.8 18.9 167 1-169 12-189 (194)
4 PRK10140 putative acetyltransf 100.0 4.7E-28 1E-32 155.1 19.3 160 5-167 2-162 (162)
5 TIGR03585 PseH pseudaminic aci 100.0 2.5E-28 5.3E-33 155.5 16.4 154 8-164 2-156 (156)
6 PF13420 Acetyltransf_4: Acety 100.0 1.4E-27 3E-32 151.9 18.2 152 9-162 1-155 (155)
7 PF13302 Acetyltransf_3: Acety 99.9 1.2E-25 2.6E-30 140.9 15.3 135 6-142 1-142 (142)
8 COG1670 RimL Acetyltransferase 99.9 9.9E-25 2.2E-29 142.4 16.8 166 3-169 6-181 (187)
9 COG1247 Sortase and related ac 99.9 8E-24 1.7E-28 132.9 16.1 160 7-168 2-165 (169)
10 TIGR03827 GNAT_ablB putative b 99.9 1.7E-23 3.7E-28 143.6 14.4 152 4-166 113-265 (266)
11 PF13523 Acetyltransf_8: Acety 99.9 1.1E-21 2.4E-26 124.3 17.7 137 9-148 1-143 (152)
12 PRK09491 rimI ribosomal-protei 99.9 6.5E-22 1.4E-26 124.6 15.9 143 7-166 2-145 (146)
13 TIGR02382 wecD_rffC TDP-D-fuco 99.9 1.7E-21 3.6E-26 127.8 14.4 136 6-148 43-187 (191)
14 PRK10146 aminoalkylphosphonic 99.9 4E-21 8.7E-26 120.7 12.3 132 5-145 2-137 (144)
15 PRK03624 putative acetyltransf 99.9 2.5E-20 5.3E-25 116.4 15.1 129 6-147 2-131 (140)
16 TIGR02406 ectoine_EctA L-2,4-d 99.9 9.8E-21 2.1E-25 120.4 12.7 135 9-155 1-137 (157)
17 PLN02706 glucosamine 6-phospha 99.9 2.4E-20 5.3E-25 117.9 13.4 133 3-146 3-144 (150)
18 PRK10975 TDP-fucosamine acetyl 99.9 3.7E-20 7.9E-25 121.8 14.7 136 6-148 46-190 (194)
19 PTZ00330 acetyltransferase; Pr 99.9 1.9E-19 4.2E-24 113.4 15.8 131 5-146 5-141 (147)
20 PRK10514 putative acetyltransf 99.9 5.3E-20 1.2E-24 115.7 13.1 141 7-165 2-143 (145)
21 KOG3139 N-acetyltransferase [G 99.8 3.2E-18 7E-23 104.8 15.3 105 57-166 56-163 (165)
22 TIGR01575 rimI ribosomal-prote 99.8 9.7E-19 2.1E-23 108.0 13.3 99 57-162 32-130 (131)
23 KOG3216 Diamine acetyltransfer 99.8 1.3E-18 2.8E-23 105.4 12.3 137 5-146 2-146 (163)
24 PRK10562 putative acetyltransf 99.8 8.3E-18 1.8E-22 105.7 13.7 139 9-166 2-141 (145)
25 PRK09831 putative acyltransfer 99.8 8.8E-18 1.9E-22 105.8 13.0 139 7-168 1-146 (147)
26 PF00583 Acetyltransf_1: Acety 99.8 1.5E-17 3.4E-22 94.7 11.4 79 62-142 2-83 (83)
27 COG3981 Predicted acetyltransf 99.7 1.3E-16 2.8E-21 99.0 12.8 142 5-148 2-161 (174)
28 TIGR03103 trio_acet_GNAT GNAT- 99.7 1.7E-16 3.7E-21 118.4 15.9 133 5-149 81-220 (547)
29 PHA00673 acetyltransferase dom 99.7 2.6E-16 5.7E-21 97.8 13.5 131 11-146 11-146 (154)
30 PRK07757 acetyltransferase; Pr 99.7 1.2E-16 2.7E-21 101.2 12.3 121 7-147 2-123 (152)
31 TIGR03448 mycothiol_MshD mycot 99.7 4.5E-16 9.8E-21 108.6 15.2 138 5-147 148-289 (292)
32 COG0456 RimI Acetyltransferase 99.7 9.5E-16 2.1E-20 99.4 14.4 137 5-152 10-160 (177)
33 PHA01807 hypothetical protein 99.7 5.7E-16 1.2E-20 97.3 12.7 125 10-139 7-136 (153)
34 PRK07922 N-acetylglutamate syn 99.7 3E-16 6.5E-21 100.9 11.6 124 4-147 3-128 (169)
35 TIGR01686 FkbH FkbH-like domai 99.7 4.5E-16 9.7E-21 109.6 13.3 126 6-144 186-319 (320)
36 PF13673 Acetyltransf_10: Acet 99.7 2E-15 4.3E-20 91.4 12.0 83 46-141 33-117 (117)
37 KOG4135 Predicted phosphogluco 99.7 2.7E-15 5.9E-20 90.5 12.2 142 3-146 10-170 (185)
38 PF13527 Acetyltransf_9: Acety 99.7 4E-15 8.6E-20 91.4 11.7 122 8-144 1-127 (127)
39 TIGR03448 mycothiol_MshD mycot 99.6 1E-14 2.3E-19 101.7 12.9 127 10-148 4-130 (292)
40 PRK10314 putative acyltransfer 99.6 7.7E-15 1.7E-19 92.8 11.1 86 56-146 48-134 (153)
41 PF13508 Acetyltransf_7: Acety 99.6 1.5E-14 3.3E-19 81.5 11.1 75 57-143 4-79 (79)
42 PLN02825 amino-acid N-acetyltr 99.6 5.8E-15 1.3E-19 108.5 10.9 122 8-147 369-491 (515)
43 TIGR01890 N-Ac-Glu-synth amino 99.6 6.1E-15 1.3E-19 107.7 10.8 123 7-147 283-406 (429)
44 KOG3235 Subunit of the major N 99.6 2.1E-14 4.6E-19 87.7 10.8 136 7-156 2-144 (193)
45 KOG3396 Glucosamine-phosphate 99.6 4.7E-14 1E-18 84.0 10.9 130 5-145 5-143 (150)
46 PRK05279 N-acetylglutamate syn 99.6 1.4E-14 3E-19 106.2 10.5 122 7-146 295-417 (441)
47 PRK12308 bifunctional arginino 99.6 2.5E-14 5.4E-19 108.5 10.7 123 5-147 462-585 (614)
48 COG3393 Predicted acetyltransf 99.6 2.1E-13 4.6E-18 90.6 13.2 134 5-150 132-266 (268)
49 COG1246 ArgA N-acetylglutamate 99.6 7.6E-14 1.7E-18 85.8 10.3 121 8-146 2-123 (153)
50 PF08445 FR47: FR47-like prote 99.5 7.6E-13 1.7E-17 75.4 11.5 72 65-146 10-82 (86)
51 PRK01346 hypothetical protein; 99.5 1.1E-12 2.3E-17 95.8 13.9 130 5-150 5-140 (411)
52 KOG3138 Predicted N-acetyltran 99.5 1.5E-13 3.3E-18 87.8 7.7 146 7-164 17-170 (187)
53 KOG3234 Acetyltransferase, (GN 99.4 1E-12 2.2E-17 80.3 8.4 134 8-153 3-138 (173)
54 cd02169 Citrate_lyase_ligase C 99.4 5E-12 1.1E-16 87.6 11.0 78 59-148 8-86 (297)
55 PRK13688 hypothetical protein; 99.4 2.2E-11 4.7E-16 77.0 12.6 82 56-147 45-134 (156)
56 COG3153 Predicted acetyltransf 99.4 1.8E-11 3.9E-16 77.6 11.1 128 5-148 2-133 (171)
57 KOG2488 Acetyltransferase (GNA 99.4 6E-12 1.3E-16 79.5 8.7 83 65-149 102-185 (202)
58 TIGR00124 cit_ly_ligase [citra 99.4 3E-11 6.4E-16 85.0 12.8 98 40-149 11-112 (332)
59 PF12746 GNAT_acetyltran: GNAT 99.2 5.3E-10 1.2E-14 76.1 12.8 89 56-152 165-253 (265)
60 PF08444 Gly_acyl_tr_C: Aralky 99.2 1.2E-10 2.6E-15 65.3 6.0 71 64-144 7-78 (89)
61 COG2153 ElaA Predicted acyltra 99.1 8.4E-10 1.8E-14 67.0 9.2 86 56-146 49-136 (155)
62 TIGR01211 ELP3 histone acetylt 99.1 1.1E-09 2.4E-14 81.3 11.1 86 57-147 412-517 (522)
63 KOG3397 Acetyltransferases [Ge 99.1 2.1E-09 4.5E-14 67.2 9.2 79 64-148 65-143 (225)
64 cd04301 NAT_SF N-Acyltransfera 99.0 4E-09 8.7E-14 56.1 8.5 61 60-123 3-64 (65)
65 PF14542 Acetyltransf_CG: GCN5 98.8 2.3E-07 5E-12 51.7 10.4 70 59-139 2-72 (78)
66 PF12568 DUF3749: Acetyltransf 98.8 9.3E-08 2E-12 57.3 9.2 88 49-144 31-123 (128)
67 PF13718 GNAT_acetyltr_2: GNAT 98.8 6E-07 1.3E-11 58.5 13.3 119 40-164 14-194 (196)
68 COG5628 Predicted acetyltransf 98.5 1.5E-06 3.3E-11 51.1 8.4 82 55-142 36-119 (143)
69 COG3818 Predicted acetyltransf 98.5 1.3E-06 2.9E-11 52.3 7.7 129 6-148 7-150 (167)
70 KOG4144 Arylalkylamine N-acety 98.5 2.3E-07 4.9E-12 57.1 4.4 130 5-147 10-162 (190)
71 PF11039 DUF2824: Protein of u 98.4 8.4E-06 1.8E-10 48.8 9.7 106 54-168 36-141 (151)
72 PF04958 AstA: Arginine N-succ 98.3 7.6E-06 1.7E-10 57.7 9.6 102 7-111 2-150 (342)
73 PRK10456 arginine succinyltran 98.3 1.9E-05 4.2E-10 55.6 10.4 138 7-147 2-250 (344)
74 COG1444 Predicted P-loop ATPas 98.2 1.2E-05 2.6E-10 62.2 7.7 73 87-163 536-608 (758)
75 COG2388 Predicted acetyltransf 98.2 2E-05 4.3E-10 45.7 6.9 60 55-119 14-74 (99)
76 TIGR03244 arg_catab_AstA argin 98.1 4.9E-05 1.1E-09 53.5 9.9 137 8-147 1-248 (336)
77 TIGR03245 arg_AOST_alph argini 98.1 4.8E-05 1E-09 53.5 9.4 137 8-147 1-249 (336)
78 COG3053 CitC Citrate lyase syn 98.1 9.3E-05 2E-09 50.8 9.9 75 64-150 45-119 (352)
79 PHA01733 hypothetical protein 98.1 4.6E-06 9.9E-11 51.6 3.4 130 8-148 4-134 (153)
80 TIGR03243 arg_catab_AOST argin 98.1 6.7E-05 1.5E-09 52.8 9.5 136 9-147 2-248 (335)
81 PHA00432 internal virion prote 98.0 4.1E-05 8.8E-10 46.8 7.1 131 7-163 1-134 (137)
82 COG3882 FkbH Predicted enzyme 98.0 4.9E-05 1.1E-09 55.6 8.0 130 6-146 413-550 (574)
83 COG0454 WecD Histone acetyltra 98.0 1.9E-05 4.2E-10 47.1 4.9 44 88-141 87-130 (156)
84 COG4552 Eis Predicted acetyltr 97.9 6.4E-05 1.4E-09 52.8 7.4 88 55-149 38-130 (389)
85 PF06852 DUF1248: Protein of u 97.8 0.0014 2.9E-08 42.5 11.2 122 10-146 8-137 (181)
86 PF13480 Acetyltransf_6: Acety 97.7 0.00098 2.1E-08 41.2 10.0 114 7-125 20-135 (142)
87 PHA00771 head assembly protein 97.5 0.0016 3.5E-08 39.0 7.8 105 56-169 38-142 (151)
88 PF13880 Acetyltransf_13: ESCO 97.4 0.0004 8.7E-09 37.5 4.3 25 87-111 10-34 (70)
89 PF00765 Autoind_synth: Autoin 97.2 0.026 5.7E-07 36.9 14.4 98 56-159 45-167 (182)
90 PRK01305 arginyl-tRNA-protein 97.1 0.038 8.2E-07 37.7 12.0 100 39-146 128-227 (240)
91 PF05301 Mec-17: Touch recepto 97.1 0.0062 1.3E-07 36.4 7.2 77 64-146 17-104 (120)
92 COG3375 Uncharacterized conser 97.1 0.039 8.4E-07 36.9 11.1 102 45-150 35-141 (266)
93 cd04264 DUF619-NAGS DUF619 dom 97.0 0.013 2.8E-07 34.2 7.7 66 58-131 10-76 (99)
94 TIGR03827 GNAT_ablB putative b 96.9 0.0055 1.2E-07 42.5 6.7 62 98-168 21-82 (266)
95 PF01233 NMT: Myristoyl-CoA:pr 96.9 0.051 1.1E-06 34.4 10.8 112 7-122 24-149 (162)
96 KOG3698 Hyaluronoglucosaminida 96.8 0.011 2.3E-07 44.8 8.0 53 93-147 827-879 (891)
97 COG1243 ELP3 Histone acetyltra 96.7 0.0028 6.1E-08 46.5 4.3 79 64-147 415-510 (515)
98 PF04377 ATE_C: Arginine-tRNA- 96.6 0.078 1.7E-06 32.5 9.6 84 40-129 24-107 (128)
99 PRK13834 putative autoinducer 96.5 0.12 2.6E-06 34.6 11.6 77 64-145 62-164 (207)
100 COG3916 LasI N-acyl-L-homoseri 96.5 0.12 2.6E-06 34.2 11.0 96 55-156 51-172 (209)
101 cd04265 DUF619-NAGS-U DUF619 d 96.4 0.058 1.3E-06 31.5 7.6 65 58-131 11-76 (99)
102 KOG2036 Predicted P-loop ATPas 96.4 0.029 6.3E-07 43.7 7.8 27 86-112 618-644 (1011)
103 TIGR03694 exosort_acyl putativ 96.3 0.19 4.1E-06 34.5 10.9 96 56-157 55-208 (241)
104 TIGR03019 pepcterm_femAB FemAB 96.3 0.17 3.7E-06 36.4 11.1 137 6-155 151-290 (330)
105 KOG2535 RNA polymerase II elon 96.1 0.014 3.1E-07 41.5 4.9 52 92-147 497-548 (554)
106 PF01853 MOZ_SAS: MOZ/SAS fami 96.0 0.077 1.7E-06 34.6 7.4 47 65-114 65-112 (188)
107 PF02799 NMT_C: Myristoyl-CoA: 96.0 0.25 5.5E-06 32.4 11.2 130 9-150 31-170 (190)
108 PF09390 DUF1999: Protein of u 95.9 0.22 4.7E-06 30.9 12.3 131 7-146 1-141 (161)
109 COG3138 AstA Arginine/ornithin 95.2 0.18 3.9E-06 35.1 7.2 66 7-75 2-78 (336)
110 PLN03238 probable histone acet 94.9 0.18 3.8E-06 35.2 6.6 47 65-114 140-187 (290)
111 KOG2779 N-myristoyl transferas 94.7 0.23 5.1E-06 35.6 6.9 56 57-112 135-197 (421)
112 KOG4601 Uncharacterized conser 94.6 0.11 2.3E-06 34.9 4.7 51 84-139 110-160 (264)
113 PF11124 Pho86: Inorganic phos 94.4 1.2 2.7E-05 31.4 9.8 90 56-145 169-270 (304)
114 KOG2747 Histone acetyltransfer 94.4 0.063 1.4E-06 39.0 3.7 56 56-111 233-289 (396)
115 KOG2696 Histone acetyltransfer 94.0 0.28 6.1E-06 35.4 6.2 61 66-129 199-261 (403)
116 PF09924 DUF2156: Uncharacteri 94.0 0.75 1.6E-05 32.6 8.5 111 7-127 133-248 (299)
117 KOG2779 N-myristoyl transferas 94.0 0.58 1.3E-05 33.7 7.6 125 8-144 262-395 (421)
118 PLN03239 histone acetyltransfe 93.7 0.33 7.1E-06 34.9 6.0 47 65-114 198-245 (351)
119 PTZ00064 histone acetyltransfe 93.6 0.27 5.9E-06 37.0 5.6 47 65-114 369-416 (552)
120 PRK14852 hypothetical protein; 93.1 0.78 1.7E-05 37.9 7.9 136 6-151 28-186 (989)
121 PF11090 DUF2833: Protein of u 92.8 0.49 1.1E-05 26.7 4.7 29 117-145 55-83 (86)
122 PLN00104 MYST -like histone ac 92.4 0.28 6E-06 36.6 4.3 47 65-114 291-338 (450)
123 COG2401 ABC-type ATPase fused 92.2 0.1 2.2E-06 38.6 2.0 55 88-144 247-306 (593)
124 PF04816 DUF633: Family of unk 91.2 3.2 6.9E-05 27.8 8.1 65 98-164 74-138 (205)
125 PF04768 DUF619: Protein of un 90.5 3.4 7.3E-05 26.8 7.6 108 16-143 33-143 (170)
126 PF13444 Acetyltransf_5: Acety 89.5 2.2 4.8E-05 24.8 5.6 51 54-104 28-100 (101)
127 PF04339 DUF482: Protein of un 87.0 10 0.00023 28.0 10.0 132 6-154 199-337 (370)
128 cd04266 DUF619-NAGS-FABP DUF61 85.6 5.7 0.00012 23.7 7.8 67 58-131 11-83 (108)
129 PF02474 NodA: Nodulation prot 85.0 3.5 7.5E-05 26.7 4.8 51 84-140 86-137 (196)
130 COG5027 SAS2 Histone acetyltra 82.7 0.72 1.6E-05 33.1 1.3 39 66-107 248-287 (395)
131 PRK15312 antimicrobial resista 82.6 3.6 7.8E-05 29.1 4.5 94 8-104 156-252 (298)
132 PHA02769 hypothetical protein; 82.4 1.7 3.8E-05 25.8 2.6 46 100-148 94-141 (154)
133 PF07395 Mig-14: Mig-14; Inte 81.7 3.8 8.2E-05 28.6 4.4 103 8-113 128-235 (264)
134 COG5092 NMT1 N-myristoyl trans 80.0 8.3 0.00018 27.7 5.6 56 57-112 133-195 (451)
135 COG2384 Predicted SAM-dependen 78.7 18 0.00039 24.6 7.3 66 98-165 93-158 (226)
136 COG2231 Uncharacterized protei 77.9 3.2 7E-05 27.7 3.0 40 97-145 121-160 (215)
137 cd08356 Glo_EDI_BRP_like_17 Th 77.8 2.9 6.2E-05 24.7 2.6 19 130-148 13-31 (113)
138 cd09012 Glo_EDI_BRP_like_24 Th 77.3 4.7 0.0001 24.1 3.5 17 130-146 12-28 (124)
139 COG2935 Putative arginyl-tRNA: 76.2 23 0.0005 24.5 10.7 61 64-129 159-219 (253)
140 cd07235 MRD Mitomycin C resist 74.7 5.1 0.00011 23.7 3.2 25 120-145 3-27 (122)
141 cd08350 BLMT_like BLMT, a bleo 73.5 5.6 0.00012 23.6 3.1 19 130-148 14-32 (120)
142 cd08353 Glo_EDI_BRP_like_7 Thi 71.7 5.9 0.00013 24.3 3.0 29 117-146 3-31 (142)
143 COG5092 NMT1 N-myristoyl trans 71.3 10 0.00022 27.3 4.2 130 7-144 259-412 (451)
144 PF02100 ODC_AZ: Ornithine dec 71.2 19 0.00042 21.4 5.3 56 89-146 29-87 (108)
145 PF12953 DUF3842: Domain of un 69.3 14 0.0003 22.8 4.0 61 94-160 7-67 (131)
146 PRK02983 lysS lysyl-tRNA synth 68.6 63 0.0014 28.0 8.8 58 64-127 429-487 (1094)
147 PF07315 DUF1462: Protein of u 67.1 15 0.00031 21.1 3.5 34 37-70 47-80 (93)
148 COG2348 Peptidoglycan interpep 66.5 55 0.0012 24.8 9.4 87 57-149 41-147 (418)
149 COG3473 Maleate cis-trans isom 65.5 39 0.00084 23.0 5.8 34 113-147 114-150 (238)
150 cd08358 Glo_EDI_BRP_like_21 Th 65.2 20 0.00043 22.0 4.3 27 120-147 5-32 (127)
151 COG3607 Predicted lactoylgluta 64.9 7.7 0.00017 23.7 2.3 19 130-148 15-33 (133)
152 cd08362 BphC5-RrK37_N_like N-t 64.4 23 0.0005 20.7 4.5 34 117-151 3-37 (120)
153 cd08342 HPPD_N_like N-terminal 64.3 17 0.00036 22.2 3.9 29 119-148 2-31 (136)
154 PRK04531 acetylglutamate kinas 63.3 62 0.0013 24.4 8.7 64 57-131 288-352 (398)
155 KOG3014 Protein involved in es 59.8 57 0.0012 22.7 7.6 43 87-130 188-231 (257)
156 PRK00756 acyltransferase NodA; 59.1 43 0.00093 21.8 4.9 50 84-139 86-136 (196)
157 cd07267 THT_Oxygenase_N N-term 58.9 18 0.0004 21.1 3.3 29 117-146 3-31 (113)
158 COG5630 ARG2 Acetylglutamate s 58.6 53 0.0012 24.5 5.9 79 60-144 377-458 (495)
159 cd08344 MhqB_like_N N-terminal 58.3 20 0.00043 20.9 3.4 29 117-146 2-30 (112)
160 PF14696 Glyoxalase_5: Hydroxy 57.1 6 0.00013 24.7 1.0 32 117-149 9-40 (139)
161 PF00903 Glyoxalase: Glyoxalas 57.0 32 0.00069 20.1 4.3 30 118-148 2-32 (128)
162 COG2898 Uncharacterized conser 56.5 98 0.0021 24.4 8.2 59 64-127 401-460 (538)
163 COG2266 GTP:adenosylcobinamide 56.4 41 0.00089 22.1 4.6 45 100-147 26-70 (177)
164 PF02388 FemAB: FemAB family; 55.7 87 0.0019 23.6 7.0 87 58-148 37-142 (406)
165 cd03173 DUF619-like DUF619 dom 54.0 43 0.00094 19.6 8.5 63 59-131 12-75 (98)
166 cd08346 PcpA_N_like N-terminal 53.1 34 0.00074 19.9 3.9 29 118-147 2-31 (126)
167 COG2994 HlyC ACP:hemolysin acy 52.4 57 0.0012 20.5 7.2 85 40-133 37-140 (148)
168 cd07238 Glo_EDI_BRP_like_5 Thi 51.5 20 0.00044 20.7 2.7 16 130-145 12-28 (112)
169 PF12652 CotJB: CotJB protein; 50.0 13 0.00028 20.7 1.5 36 102-139 3-38 (78)
170 PF12681 Glyoxalase_2: Glyoxal 49.4 31 0.00068 19.6 3.3 21 130-150 7-28 (108)
171 KOG4387 Ornithine decarboxylas 45.5 87 0.0019 20.7 6.7 59 88-147 105-166 (191)
172 cd07265 2_3_CTD_N N-terminal d 45.3 43 0.00094 19.7 3.5 30 117-147 4-34 (122)
173 KOG1472 Histone acetyltransfer 45.1 5.3 0.00012 32.0 -0.7 99 45-149 407-508 (720)
174 cd07243 2_3_CTD_C C-terminal d 44.5 53 0.0011 20.3 3.9 30 117-147 6-36 (143)
175 PRK13886 conjugal transfer pro 42.8 68 0.0015 22.3 4.4 43 98-142 13-55 (241)
176 TIGR03645 glyox_marine lactoyl 42.4 46 0.00099 21.1 3.4 27 117-144 4-31 (162)
177 cd07240 ED_TypeI_classII_N N-t 41.9 68 0.0015 18.4 4.9 31 118-149 3-34 (117)
178 cd07253 Glo_EDI_BRP_like_2 Thi 41.7 44 0.00096 19.4 3.2 30 117-147 3-33 (125)
179 cd07242 Glo_EDI_BRP_like_6 Thi 41.7 63 0.0014 19.1 3.8 28 118-146 2-33 (128)
180 PRK14968 putative methyltransf 41.7 85 0.0018 20.1 4.7 47 102-150 129-175 (188)
181 PF13380 CoA_binding_2: CoA bi 40.6 81 0.0018 18.9 5.4 72 64-146 37-108 (116)
182 cd07241 Glo_EDI_BRP_like_3 Thi 40.3 70 0.0015 18.6 3.9 27 119-146 3-30 (125)
183 PF13289 SIR2_2: SIR2-like dom 40.0 86 0.0019 19.0 4.4 24 120-143 118-142 (143)
184 cd07252 BphC1-RGP6_N_like N-te 39.6 51 0.0011 19.4 3.2 29 117-146 2-31 (120)
185 cd07246 Glo_EDI_BRP_like_8 Thi 39.1 78 0.0017 18.3 4.3 20 128-147 11-31 (122)
186 cd08364 FosX FosX, a fosfomyci 38.7 73 0.0016 19.2 3.8 29 117-146 4-33 (131)
187 cd07244 FosA FosA, a Fosfomyci 38.3 82 0.0018 18.5 4.0 29 118-147 2-31 (121)
188 PRK13913 3-methyladenine DNA g 37.8 52 0.0011 22.5 3.2 39 96-143 126-164 (218)
189 PRK05031 tRNA (uracil-5-)-meth 37.7 1.6E+02 0.0036 21.7 6.0 53 88-150 292-345 (362)
190 TIGR02990 ectoine_eutA ectoine 37.5 76 0.0016 22.0 4.0 36 111-147 114-152 (239)
191 PF04015 DUF362: Domain of unk 36.9 1.1E+02 0.0023 20.4 4.6 49 96-146 17-67 (206)
192 PRK10291 glyoxalase I; Provisi 36.6 48 0.001 19.8 2.8 18 130-147 8-26 (129)
193 PF11009 DUF2847: Protein of u 36.6 94 0.002 18.5 4.0 54 92-146 26-80 (105)
194 TIGR00068 glyox_I lactoylgluta 36.5 77 0.0017 19.6 3.8 29 117-146 17-46 (150)
195 PLN02300 lactoylglutathione ly 36.4 54 0.0012 23.1 3.3 41 105-146 12-53 (286)
196 cd07237 BphC1-RGP6_C_like C-te 36.1 88 0.0019 19.6 4.0 29 117-146 9-38 (154)
197 cd07264 Glo_EDI_BRP_like_15 Th 35.9 78 0.0017 18.5 3.6 16 130-145 12-28 (125)
198 PRK12303 tumor necrosis factor 35.7 94 0.002 19.1 3.7 48 98-145 104-151 (192)
199 cd08349 BLMA_like Bleomycin bi 35.7 47 0.001 18.9 2.6 18 130-147 10-28 (112)
200 cd08348 BphC2-C3-RGP6_C_like T 35.5 99 0.0022 18.4 5.1 29 119-148 3-32 (134)
201 COG0623 FabI Enoyl-[acyl-carri 34.8 72 0.0016 22.2 3.4 38 90-128 151-188 (259)
202 PTZ00129 40S ribosomal protein 34.7 1.2E+02 0.0027 19.3 6.9 48 98-147 71-130 (149)
203 PF11324 DUF3126: Protein of u 34.5 78 0.0017 16.9 4.5 61 105-169 3-63 (63)
204 cd07266 HPCD_N_class_II N-term 34.2 76 0.0016 18.5 3.3 29 117-146 4-33 (121)
205 COG0346 GloA Lactoylglutathion 34.2 79 0.0017 18.2 3.5 31 117-148 2-33 (138)
206 COG1437 CyaB Adenylate cyclase 34.1 1.1E+02 0.0024 20.2 4.1 31 119-150 79-109 (178)
207 cd08352 Glo_EDI_BRP_like_1 Thi 32.8 1E+02 0.0022 17.8 3.8 28 117-145 3-31 (125)
208 cd04883 ACT_AcuB C-terminal AC 32.3 81 0.0018 16.4 4.1 28 118-145 42-70 (72)
209 cd07256 HPCD_C_class_II C-term 32.2 94 0.002 19.6 3.7 29 117-146 3-32 (161)
210 cd07263 Glo_EDI_BRP_like_16 Th 31.9 56 0.0012 18.7 2.5 18 130-147 10-28 (119)
211 PRK11478 putative lyase; Provi 31.8 68 0.0015 18.9 2.9 28 117-145 6-34 (129)
212 COG1724 Predicted RNA binding 31.3 92 0.002 16.7 2.9 21 130-150 10-30 (66)
213 cd08359 Glo_EDI_BRP_like_22 Th 30.8 86 0.0019 18.1 3.2 17 130-146 13-30 (119)
214 cd07262 Glo_EDI_BRP_like_19 Th 30.5 94 0.002 18.1 3.3 27 120-147 3-33 (123)
215 cd08361 PpCmtC_N N-terminal do 30.5 76 0.0016 18.9 2.9 28 118-146 7-35 (124)
216 PF06564 YhjQ: YhjQ protein; 30.0 88 0.0019 21.8 3.4 44 95-142 10-53 (243)
217 PF01136 Peptidase_U32: Peptid 29.7 1.3E+02 0.0029 20.3 4.3 24 123-146 43-66 (233)
218 cd08360 MhqB_like_C C-terminal 29.6 1.3E+02 0.0028 18.1 3.8 30 117-147 3-33 (134)
219 PF06559 DCD: 2'-deoxycytidine 29.4 29 0.00062 25.4 1.0 35 63-99 322-356 (364)
220 PF12261 T_hemolysin: Thermost 29.4 1.7E+02 0.0037 19.3 5.4 75 64-146 43-142 (179)
221 cd08355 Glo_EDI_BRP_like_14 Th 29.4 87 0.0019 18.3 3.0 20 128-147 9-29 (122)
222 cd07249 MMCE Methylmalonyl-CoA 29.4 63 0.0014 18.9 2.4 28 119-147 2-30 (128)
223 COG0826 Collagenase and relate 29.1 2.2E+02 0.0047 21.2 5.3 24 121-144 118-141 (347)
224 TIGR00055 uppS undecaprenyl di 28.8 82 0.0018 21.7 3.0 35 92-128 20-54 (226)
225 PRK14837 undecaprenyl pyrophos 28.4 84 0.0018 21.7 3.0 35 92-128 27-61 (230)
226 cd07255 Glo_EDI_BRP_like_12 Th 28.3 1.3E+02 0.0028 17.5 5.1 30 117-147 2-32 (125)
227 PF07927 YcfA: YcfA-like prote 28.3 84 0.0018 15.7 2.4 15 132-146 4-18 (56)
228 PRK14831 undecaprenyl pyrophos 27.2 83 0.0018 22.0 2.9 34 92-127 41-74 (249)
229 cd06587 Glo_EDI_BRP_like This 27.2 80 0.0017 17.4 2.6 21 128-148 8-29 (112)
230 PF12162 STAT1_TAZ2bind: STAT1 26.7 17 0.00038 14.9 -0.3 15 9-23 7-21 (23)
231 COG4837 Uncharacterized protei 26.6 1.4E+02 0.003 17.4 5.2 34 37-70 54-87 (106)
232 COG3620 Predicted transcriptio 26.1 1.7E+02 0.0037 19.2 3.8 32 40-72 144-175 (187)
233 COG0807 RibA GTP cyclohydrolas 26.0 2.1E+02 0.0046 19.2 4.5 50 88-148 120-169 (193)
234 COG1212 KdsB CMP-2-keto-3-deox 26.0 2.2E+02 0.0048 19.8 4.5 47 100-150 27-73 (247)
235 COG0022 AcoB Pyruvate/2-oxoglu 25.8 1.2E+02 0.0027 22.0 3.5 33 88-121 256-288 (324)
236 PRK10150 beta-D-glucuronidase; 25.8 2.9E+02 0.0063 22.2 5.9 53 94-148 305-357 (604)
237 cd09013 BphC-JF8_N_like N-term 25.7 1.5E+02 0.0032 17.3 4.0 30 117-147 6-36 (121)
238 cd08343 ED_TypeI_classII_C C-t 25.6 1.6E+02 0.0034 17.6 3.7 17 130-146 11-28 (131)
239 PF00571 CBS: CBS domain CBS d 25.6 96 0.0021 15.1 4.4 33 39-74 16-49 (57)
240 PF01656 CbiA: CobQ/CobB/MinD/ 25.5 1.9E+02 0.0041 18.5 4.5 37 98-135 9-45 (195)
241 PRK06724 hypothetical protein; 25.2 1.3E+02 0.0029 18.2 3.3 27 117-144 7-37 (128)
242 cd08357 Glo_EDI_BRP_like_18 Th 25.1 81 0.0018 18.3 2.4 18 129-146 10-28 (125)
243 cd06588 PhnB_like Escherichia 24.9 1.5E+02 0.0033 17.7 3.5 26 123-148 5-31 (128)
244 PF00925 GTP_cyclohydro2: GTP 24.1 2.1E+02 0.0046 18.5 7.9 47 91-148 122-168 (169)
245 PRK14829 undecaprenyl pyrophos 23.7 99 0.0021 21.5 2.7 34 92-127 35-68 (243)
246 PF00376 MerR: MerR family reg 23.5 87 0.0019 14.5 1.8 14 130-143 13-26 (38)
247 COG3543 Uncharacterized conser 23.4 1.8E+02 0.0039 18.1 3.4 37 91-128 13-49 (135)
248 PF07991 IlvN: Acetohydroxy ac 23.3 2.2E+02 0.0048 18.6 4.3 43 98-145 11-53 (165)
249 TIGR03371 cellulose_yhjQ cellu 23.3 1.9E+02 0.0041 19.6 4.1 34 98-132 12-45 (246)
250 PRK09319 bifunctional 3,4-dihy 23.1 4E+02 0.0086 21.4 7.5 33 113-148 347-379 (555)
251 cd08354 Glo_EDI_BRP_like_13 Th 23.0 1.6E+02 0.0035 16.9 3.7 17 129-145 11-28 (122)
252 PRK14841 undecaprenyl pyrophos 23.0 1.2E+02 0.0025 21.1 2.9 35 92-128 24-58 (233)
253 PRK14842 undecaprenyl pyrophos 22.4 1.3E+02 0.0029 20.9 3.1 35 92-128 29-63 (241)
254 PF00633 HHH: Helix-hairpin-he 22.4 74 0.0016 13.9 1.3 13 97-109 17-29 (30)
255 cd07239 BphC5-RK37_C_like C-te 22.0 1.9E+02 0.0041 17.9 3.6 29 117-146 4-33 (144)
256 COG2514 Predicted ring-cleavag 22.0 3E+02 0.0065 19.6 4.7 44 118-162 169-214 (265)
257 PF06399 GFRP: GTP cyclohydrol 21.9 73 0.0016 17.9 1.5 45 102-147 26-70 (83)
258 PF13530 SCP2_2: Sterol carrie 21.8 2.6E+02 0.0057 18.8 9.0 62 56-126 24-89 (218)
259 cd07254 Glo_EDI_BRP_like_20 Th 21.5 1.8E+02 0.0039 16.8 3.4 23 125-147 7-31 (120)
260 COG2265 TrmA SAM-dependent met 21.5 3.2E+02 0.0068 21.1 5.2 52 88-146 366-418 (432)
261 PF04555 XhoI: Restriction end 21.5 2.6E+02 0.0057 18.7 4.8 34 88-123 145-178 (196)
262 PF13669 Glyoxalase_4: Glyoxal 21.5 1.8E+02 0.0039 16.8 3.4 23 126-148 7-30 (109)
263 cd08363 FosB FosB, a fosfomyci 21.5 1.8E+02 0.0039 17.5 3.4 27 119-146 2-29 (131)
264 PRK14834 undecaprenyl pyrophos 21.4 1.6E+02 0.0034 20.7 3.3 35 92-128 35-69 (249)
265 COG0473 LeuB Isocitrate/isopro 21.4 1.7E+02 0.0036 21.7 3.5 44 95-141 10-53 (348)
266 cd00475 CIS_IPPS Cis (Z)-Isopr 21.4 1.3E+02 0.0029 20.6 3.0 35 92-128 21-55 (221)
267 cd07233 Glyoxalase_I Glyoxalas 21.2 1.8E+02 0.0039 16.7 4.5 27 120-147 3-30 (121)
268 PF02836 Glyco_hydro_2_C: Glyc 21.0 3.2E+02 0.0068 19.4 5.2 53 95-149 29-81 (298)
269 PRK14832 undecaprenyl pyrophos 21.0 1.1E+02 0.0024 21.4 2.6 35 92-128 39-73 (253)
270 PHA01365 hypothetical protein 20.8 1.7E+02 0.0037 16.3 2.9 29 99-128 3-31 (91)
271 KOG2499 Beta-N-acetylhexosamin 20.8 1E+02 0.0022 24.0 2.5 28 117-144 333-360 (542)
272 PRK10240 undecaprenyl pyrophos 20.8 1.1E+02 0.0024 21.1 2.5 35 92-128 14-48 (229)
273 cd09011 Glo_EDI_BRP_like_23 Th 20.7 1.9E+02 0.0041 16.8 3.9 26 119-145 4-30 (120)
274 COG5270 PUA domain (predicted 20.6 2.1E+02 0.0045 19.1 3.5 13 64-76 171-183 (202)
275 COG4904 Uncharacterized protei 20.4 80 0.0017 20.1 1.6 14 131-144 71-84 (174)
276 PLN03042 Lactoylglutathione ly 20.4 2.7E+02 0.0059 18.4 4.2 29 118-147 28-57 (185)
277 cd07257 THT_oxygenase_C The C- 20.3 2.3E+02 0.005 17.6 3.8 27 119-146 3-30 (153)
278 PRK09318 bifunctional 3,4-dihy 20.2 3.5E+02 0.0076 20.5 5.1 48 90-148 309-356 (387)
No 1
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=100.00 E-value=7.2e-31 Score=171.65 Aligned_cols=167 Identities=22% Similarity=0.289 Sum_probs=138.3
Q ss_pred CCccceEEEeeCCCCChhhHHhhcCCccccccccCCCcCChHHHHHHHHHhh-ccCCeEEEEEECCeEEEEEEEEeCCCC
Q 030910 1 MLKPIEITLRPFKISDVDDFMGWAGDENVTKYCRWNTFTFRDDAVAFLKEVI-KSHPWYRAICVKDRPIGSIYVMPGIGK 79 (169)
Q Consensus 1 m~~~~~i~ir~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~vG~~~~~~~~~~ 79 (169)
|++++.+.|||++++|++.+.++.+++....+....+.........++.... ......|++..+|++||++.+...+..
T Consensus 1 ~~~~~~l~lR~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~iG~~~~~~~~~~ 80 (186)
T PRK15130 1 MPSAHSVKLRPLEREDLRFVHQLDNNASVMRYWFEEPYEAFVELSDLYDKHIHDQSERRFVVECDGEKAGLVELVEINHV 80 (186)
T ss_pred CCCCCeeEEecCCHHHHHHHHHHhcChHHHhhcCCcccccHHHHHHHHHHhhhcccCcEEEEEECCEEEEEEEEEeecCC
Confidence 8899999999999999999999998876555433233333334444554443 233456666679999999999876543
Q ss_pred CCcEEEEEEEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeEEeeeeecCCEEeE
Q 030910 80 DERRGEIGYAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGLLRKYFFVKGKSVD 159 (169)
Q Consensus 80 ~~~~~~i~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~~~~~~~~~g~~~d 159 (169)
.. .++++++|+|+|||+|+|+++++.+++++++.. ++++|.+.|...|.+|+++|+|+||+.++..++++..+|++.|
T Consensus 81 ~~-~~~~~~~v~~~~~g~G~g~~l~~~l~~~~~~~~-~~~rv~~~v~~~N~~s~~~yek~GF~~~~~~~~~~~~~g~~~d 158 (186)
T PRK15130 81 HR-RAEFQIIISPEYQGKGLATRAAKLAMDYGFTVL-NLYKLYLIVDKENEKAIHIYRKLGFEVEGELIHEFFINGEYRN 158 (186)
T ss_pred CC-eEEEEEEECHHHcCCCHHHHHHHHHHHHHhhcC-CceEEEEEEccCCHHHHHHHHHCCCEEEEEEeheEEECCEEEE
Confidence 33 378999999999999999999999999999888 9999999999999999999999999999999988888999999
Q ss_pred eEEEEeeccC
Q 030910 160 IVVFSTVEAD 169 (169)
Q Consensus 160 ~~~~~~~~~~ 169 (169)
.++|++++++
T Consensus 159 ~~~~~~~~~~ 168 (186)
T PRK15130 159 TIRMCIFQHQ 168 (186)
T ss_pred EEEEEeeHHH
Confidence 9999998764
No 2
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=100.00 E-value=1.2e-30 Score=169.66 Aligned_cols=165 Identities=17% Similarity=0.197 Sum_probs=137.5
Q ss_pred CccceEEEeeCCCCChhhHHhhcCCccc--cccccC-CCcCChHHHHHHHHHhhc---cC-CeEEEEEECCeEEEEEEEE
Q 030910 2 LKPIEITLRPFKISDVDDFMGWAGDENV--TKYCRW-NTFTFRDDAVAFLKEVIK---SH-PWYRAICVKDRPIGSIYVM 74 (169)
Q Consensus 2 ~~~~~i~ir~~~~~d~~~l~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~vG~~~~~ 74 (169)
++++++.|||++++|++.+.++++++.. ..+..+ .+..+.+..+++++.... .. ...+++..+|++||++.+.
T Consensus 6 ~~t~rl~Lr~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~iG~~~l~ 85 (179)
T PRK10151 6 PVSESLELHAVDESHVTPLHQLVCKNKTWLQQSLNWPQFVQSEEDTRKTVQGNVMLHQRGYAKMFMIFKEDELIGVLSFN 85 (179)
T ss_pred EeCCcEEEEeCCHHHHHHHHHHHHHhHHHHHhcCCCcCccCCHHHHHHHHHHHHHHHhcCCcEEEEEEECCEEEEEEEEE
Confidence 5688999999999999999999865432 223333 233577888888876532 11 2356666799999999998
Q ss_pred eCCCCCCcEEEEEEEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeEEeeeeecC
Q 030910 75 PGIGKDERRGEIGYAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGLLRKYFFVK 154 (169)
Q Consensus 75 ~~~~~~~~~~~i~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~~~~~~~~~ 154 (169)
..++... .++++++++|++||+|+|+++++.++++++... ++++|.+.|.+.|.+|+++++|+||+.+|+.++....+
T Consensus 86 ~~~~~~~-~~~ig~~i~~~~~g~G~~tea~~~l~~~~~~~~-~~~ri~~~v~~~N~~S~~v~ek~Gf~~~g~~~~~~~~~ 163 (179)
T PRK10151 86 RIEPLNK-TAYIGYWLDESHQGQGIISQALQALIHHYAQSG-ELRRFVIKCRVDNPASNQVALRNGFTLEGCLKQAEYLN 163 (179)
T ss_pred eeccCCC-ceEEEEEEChhhcCCcHHHHHHHHHHHHHHhhC-CccEEEEEEcCCCHHHHHHHHHCCCEEEeEeccceEEC
Confidence 7755333 389999999999999999999999999999888 89999999999999999999999999999999998889
Q ss_pred CEEeEeEEEEeecc
Q 030910 155 GKSVDIVVFSTVEA 168 (169)
Q Consensus 155 g~~~d~~~~~~~~~ 168 (169)
|.+.|.++|+++..
T Consensus 164 g~~~D~~~~~~~~~ 177 (179)
T PRK10151 164 GAYDDVNLYARIID 177 (179)
T ss_pred CEEEEEEEEEEeec
Confidence 99999999998764
No 3
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=99.97 E-value=1.2e-29 Score=166.84 Aligned_cols=167 Identities=19% Similarity=0.317 Sum_probs=131.1
Q ss_pred CCccceEEEeeCCCCChhhHHhhcCCccccccccCCCcC-----ChHHH---HHHHHHhhccCC-eEEEEEE--CCeEEE
Q 030910 1 MLKPIEITLRPFKISDVDDFMGWAGDENVTKYCRWNTFT-----FRDDA---VAFLKEVIKSHP-WYRAICV--KDRPIG 69 (169)
Q Consensus 1 m~~~~~i~ir~~~~~d~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~---~~~~~~~~~~~~-~~~~~~~--~~~~vG 69 (169)
++.++++.||+++++|++.+.++++++... ..+|.+.. ..+.. ..++......+. ..+++.. ++++||
T Consensus 12 ~l~t~rl~LR~~~~~Da~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iG 90 (194)
T PRK10809 12 RLTTDRLVVRLVHERDAWRLADYYAENRHF-LKPWEPVRDESHCYPSGWQARLGMINEFHKQGSAFYFALLDPDEKEIIG 90 (194)
T ss_pred eeccCcEEEEeCCHHHHHHHHHHHHhCHHh-ccCCCCCCcccccCHHHHHHHHHHHHHHHhcCcEEEEEEEECCCCeEEE
Confidence 367889999999999999999999874311 11222211 12222 233443333333 3555554 679999
Q ss_pred EEEEEeCCCCCCcEEEEEEEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeEEee
Q 030910 70 SIYVMPGIGKDERRGEIGYAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGLLRK 149 (169)
Q Consensus 70 ~~~~~~~~~~~~~~~~i~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~~~~ 149 (169)
.+.+..........++++++|+|++||+|+|+++++.++++++..+ ++++|.+.|.+.|.+|+++|+|+||+.++..++
T Consensus 91 ~i~l~~~~~~~~~~~eig~~i~~~~~G~G~~~ea~~~ll~~~~~~l-~l~~i~~~v~~~N~~S~~l~ek~Gf~~~g~~~~ 169 (194)
T PRK10809 91 VANFSNVVRGSFHACYLGYSLGQKWQGQGLMFEALQAAIRYMQRQQ-HMHRIMANYMPHNKRSGDLLARLGFEKEGYAKD 169 (194)
T ss_pred EEEEEeecCCCeeeEEEEEEECHHHcCCCHHHHHHHHHHHHHHhcC-CceEEEEEeeCCCHHHHHHHHHCCCcEEeeecc
Confidence 9999877643334489999999999999999999999999999988 999999999999999999999999999999998
Q ss_pred eeecCCEEeEeEEEEeeccC
Q 030910 150 YFFVKGKSVDIVVFSTVEAD 169 (169)
Q Consensus 150 ~~~~~g~~~d~~~~~~~~~~ 169 (169)
....+|++.|.++|+++++|
T Consensus 170 ~~~~~g~~~d~~~~~~~~~~ 189 (194)
T PRK10809 170 YLLIDGQWRDHVLTALTTPE 189 (194)
T ss_pred ccccCCeEEEEEEeeeehhh
Confidence 88889999999999998754
No 4
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=99.97 E-value=4.7e-28 Score=155.06 Aligned_cols=160 Identities=20% Similarity=0.247 Sum_probs=125.1
Q ss_pred ceEEEeeCCCCChhhHHhhcCCccccccccCCCcCChHHHHHHHHHhhccCCeEEEEEECCeEEEEEEEEeCCCC-CCcE
Q 030910 5 IEITLRPFKISDVDDFMGWAGDENVTKYCRWNTFTFRDDAVAFLKEVIKSHPWYRAICVKDRPIGSIYVMPGIGK-DERR 83 (169)
Q Consensus 5 ~~i~ir~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~-~~~~ 83 (169)
+.+.|||++++|++.+.++..++.........+..+.+.....+.. ......+++..+|++||++++...... ..+.
T Consensus 2 ~~i~lr~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~vG~~~~~~~~~~~~~~~ 79 (162)
T PRK10140 2 SEIVIRHAETRDYEAIRQIHAQPEVYHNTLQVPHPSDHMWQERLAD--RPGIKQLVACIDGDVVGHLTIDVQQRPRRSHV 79 (162)
T ss_pred CccEEEecchhhHHHHHHHHhCcccccccccCCCcCHHHHHHHhhc--CCCcEEEEEEECCEEEEEEEEecccccccceE
Confidence 3589999999999999999988654433222233333333332222 122344555568999999999865322 2334
Q ss_pred EEEEEEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeEEeeeeecCCEEeEeEEE
Q 030910 84 GEIGYAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGLLRKYFFVKGKSVDIVVF 163 (169)
Q Consensus 84 ~~i~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~~~~~~~~~g~~~d~~~~ 163 (169)
++++++|+|++||+|+|+++++.++++++... +++.+.+.|.++|.+|++||+|+||+..|..+++...+|.+.|.++|
T Consensus 80 ~~~~~~v~p~~rg~Gig~~ll~~l~~~~~~~~-~~~~i~l~v~~~N~~a~~~y~k~GF~~~g~~~~~~~~~~~~~d~~~~ 158 (162)
T PRK10140 80 ADFGICVDSRWKNRGVASALMREMIEMCDNWL-RVDRIELTVFVDNAPAIKVYKKYGFEIEGTGKKYALRNGEYVDAYYM 158 (162)
T ss_pred EEEEEEECHHHcCCCHHHHHHHHHHHHHHhhC-CccEEEEEEEcCCHHHHHHHHHCCCEEEeecccceeeCCeEEEEEEE
Confidence 77899999999999999999999999998767 89999999999999999999999999999999988888999999999
Q ss_pred Eeec
Q 030910 164 STVE 167 (169)
Q Consensus 164 ~~~~ 167 (169)
++.+
T Consensus 159 ~~~~ 162 (162)
T PRK10140 159 ARVK 162 (162)
T ss_pred EecC
Confidence 9864
No 5
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=99.96 E-value=2.5e-28 Score=155.47 Aligned_cols=154 Identities=21% Similarity=0.343 Sum_probs=132.5
Q ss_pred EEeeCCCCChhhHHhhcCCccccccccCCCcCChHHHHHHHHHhhccCC-eEEEEEECCeEEEEEEEEeCCCCCCcEEEE
Q 030910 8 TLRPFKISDVDDFMGWAGDENVTKYCRWNTFTFRDDAVAFLKEVIKSHP-WYRAICVKDRPIGSIYVMPGIGKDERRGEI 86 (169)
Q Consensus 8 ~ir~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~vG~~~~~~~~~~~~~~~~i 86 (169)
.|||++++|++.+.+|.+++....+....+..+.+....|++....... ..+++..+|++||++.+....... ..+++
T Consensus 2 ~lr~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vG~~~~~~~~~~~-~~~~~ 80 (156)
T TIGR03585 2 NFTPLNSEELELVLEWRNHPDVRANMYSDHLIDWEEHLHFIEALKQDPNRRYWIVCQESRPIGVISFTDINLVH-KSAFW 80 (156)
T ss_pred CcccCCHHHHHHHHHhhCCHHHHhhccCcCCCCHHHHHHHHHHhhcCCCceEEEEEECCEEEEEEEEEecChhh-CeEEE
Confidence 4899999999999999999988777544555677888888888765443 455566699999999998776432 22788
Q ss_pred EEEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeEEeeeeecCCEEeEeEEEE
Q 030910 87 GYAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGLLRKYFFVKGKSVDIVVFS 164 (169)
Q Consensus 87 ~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~~~~~~~~~g~~~d~~~~~ 164 (169)
++++.|.+| +|+|++++..++++++++. +++.+.+.|.+.|.+|++||+|+||+.+++.+++...+|.+.|.++|+
T Consensus 81 g~~~~~~~~-~G~g~~~~~~~~~~a~~~~-~~~~i~~~v~~~N~~s~~~y~k~Gf~~~g~~~~~~~~~g~~~d~~~~~ 156 (156)
T TIGR03585 81 GIYANPFCK-PGVGSVLEEAALEYAFEHL-GLHKLSLEVLEFNNKALKLYEKFGFEREGVFRQGIFKEGEYYDVLLMY 156 (156)
T ss_pred EEEeChhhh-cCchHHHHHHHHHHHHhhC-CeeEEEEEEeccCHHHHHHHHHcCCeEeeeehhheeECCeEEEEEEeC
Confidence 888999999 9999999999999998888 999999999999999999999999999999999988999999999884
No 6
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=99.96 E-value=1.4e-27 Score=151.88 Aligned_cols=152 Identities=22% Similarity=0.350 Sum_probs=125.4
Q ss_pred EeeCCCCChhhHHhhcCCccccccccCC-CcCChHHHHHHHHHhh-ccCCeEEEEEE-CCeEEEEEEEEeCCCCCCcEEE
Q 030910 9 LRPFKISDVDDFMGWAGDENVTKYCRWN-TFTFRDDAVAFLKEVI-KSHPWYRAICV-KDRPIGSIYVMPGIGKDERRGE 85 (169)
Q Consensus 9 ir~~~~~d~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~vG~~~~~~~~~~~~~~~~ 85 (169)
|||++++|++.+.+|++++....+..+. ...+.+..+.+++... .+....+++.. +|++||++.+...++. ...++
T Consensus 1 IR~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~iiG~~~~~~~~~~-~~~~~ 79 (155)
T PF13420_consen 1 IRPATEEDLEEILKLYNEPRHEYFFTFEYPEDSEESFERWIESIIDSSKQRLFLVAEEDGKIIGYVSLRDIDPY-NHTAE 79 (155)
T ss_dssp EEE--GGGHHHHHHHHHHHHHHTSSSSCSSHS-HHHHHHHHHHHHHHHTTEEEEEEECTTEEEEEEEEEESSSG-TTEEE
T ss_pred CCCCcHHHHHHHHHHHhhhhhcceeEecCCCCCHHHHHHHHHHhcccCCCcEEEEEEcCCcEEEEEEEEeeecc-CCEEE
Confidence 7999999999999999775444444332 2356777888888774 44567778887 9999999999988763 44499
Q ss_pred EEEEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeEEeeeeecCCEEeEeEE
Q 030910 86 IGYAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGLLRKYFFVKGKSVDIVV 162 (169)
Q Consensus 86 i~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~~~~~~~~~g~~~d~~~ 162 (169)
++++|.|++|++|+|+.++..++++|+.+. ++++|.+.|.+.|.+|++||+++||+.+|+++++...+|++.|+++
T Consensus 80 ~~~~v~~~~~~~gig~~l~~~l~~~af~~~-~~~~i~~~v~~~N~~~i~~~~~~GF~~~g~~~~~~~~~~~y~D~~~ 155 (155)
T PF13420_consen 80 LSIYVSPDYRGKGIGRKLLDELIEYAFKEL-GIHKIYLEVFSSNEKAINFYKKLGFEEEGELKDHIFINGKYYDVVW 155 (155)
T ss_dssp EEEEEEGGGTTSSHHHHHHHHHHHHH-HHT-T-CEEEEEEETT-HHHHHHHHHTTEEEEEEEEEEEEETTEEEEEEE
T ss_pred EeeEEChhHCCCcHHHHHHHHHHHHhhhcc-CeEEEEEEEecCCHHHHHHHHhCCCEEEEEEecEEEECCeEEEeEC
Confidence 999999999999999999999999998888 9999999999999999999999999999999999999999999874
No 7
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=99.94 E-value=1.2e-25 Score=140.89 Aligned_cols=135 Identities=34% Similarity=0.530 Sum_probs=109.8
Q ss_pred eEEEeeCCCCChhhHHhhcCCccccccccCCCc-CChHHHHHHHHHhhc---c-CCeEEEEEE--CCeEEEEEEEEeCCC
Q 030910 6 EITLRPFKISDVDDFMGWAGDENVTKYCRWNTF-TFRDDAVAFLKEVIK---S-HPWYRAICV--KDRPIGSIYVMPGIG 78 (169)
Q Consensus 6 ~i~ir~~~~~d~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~-~~~~~~~~~--~~~~vG~~~~~~~~~ 78 (169)
++.|||++++|++.+.++++++.+..+.++.+. .+.+...+++.+... . ....|++.. ++++||++.+.....
T Consensus 1 Rl~lr~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iG~i~~~~~~~ 80 (142)
T PF13302_consen 1 RLTLRPLTPEDADAIYEWRSDPEIRRYLPWGPPWPTLEEAEEWIQSRQDSWENHGYYYFAIEDKDDGEIIGFIGLYNIDK 80 (142)
T ss_dssp SEEEEE-HGGGHHHHHHHHTTTTHCTTSSTTTSSSSHHHHHHHHHHHHHCHHEETEEEEEEEETTTTEEEEEEEEEEEET
T ss_pred CEEEEcCCHHHHHHHHHHhcCHHHHHhcCCCCCCCCHHHHHHHHHHhhhhhhcccceEEEEEeccCCceEEEeeeeeccc
Confidence 478999999999999999998888888766443 488888899874221 1 134456665 458999999966543
Q ss_pred CCCcEEEEEEEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCe
Q 030910 79 KDERRGEIGYAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFI 142 (169)
Q Consensus 79 ~~~~~~~i~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~ 142 (169)
.. ..++++++|.|++||+|+|++++..++++++++. ++.+|.+.|.++|.+|+++++|+||+
T Consensus 81 ~~-~~~eig~~i~~~~~g~G~~~~~~~~~~~~~~~~~-~~~~i~a~~~~~N~~s~~~~~k~GF~ 142 (142)
T PF13302_consen 81 NN-NWAEIGYWIGPDYRGKGYGTEALKLLLDWAFEEL-GLHRIIATVMADNEASRRLLEKLGFE 142 (142)
T ss_dssp TT-TEEEEEEEEEGGGTTSSHHHHHHHHHHHHHHHTS-TSSEEEEEEETT-HHHHHHHHHTT-E
T ss_pred CC-CccccccchhHHHHhhhHHHHHHHHHHHHHHhcC-CcEEEEEEECcCCHHHHHHHHHcCCC
Confidence 33 3399999999999999999999999999999998 99999999999999999999999996
No 8
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=9.9e-25 Score=142.44 Aligned_cols=166 Identities=34% Similarity=0.464 Sum_probs=133.6
Q ss_pred ccceEEEeeCCCCChhhHHhhcCCccccccccCCC----cCChHHHHHHHHHhhccC-CeEEEEEE--C--CeEEEEEEE
Q 030910 3 KPIEITLRPFKISDVDDFMGWAGDENVTKYCRWNT----FTFRDDAVAFLKEVIKSH-PWYRAICV--K--DRPIGSIYV 73 (169)
Q Consensus 3 ~~~~i~ir~~~~~d~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~--~--~~~vG~~~~ 73 (169)
.+.++.+|++..+|+..+..+..++....+....+ ....+....++....... ...+.+.. + +++||.+.+
T Consensus 6 ~~~r~~lr~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~ 85 (187)
T COG1670 6 LTLRLLLREVDLEDLELLAEWANDPEVMLFWWLPPPLTPPTSDEELLRLLAEAWEDLGGGAFAIELKATGDGELIGVIGL 85 (187)
T ss_pred ccceeEeecCcHhHHHHHHHHhcChHhhcccCCCCCcccccchHHHHHHHHHHHhhcCCceEEEEEEeCCCCeEEEEEEE
Confidence 45678889999999999998887776665543332 334455555555544333 34444443 3 499999999
Q ss_pred EeCCC-CCCcEEEEEEEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeEEeeeee
Q 030910 74 MPGIG-KDERRGEIGYAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGLLRKYFF 152 (169)
Q Consensus 74 ~~~~~-~~~~~~~i~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~~~~~~~ 152 (169)
..... .....+++++++.|++||+|+|++++.++++++|.+. ++++|.+.|.+.|.+|+++++|+||+.+|..+....
T Consensus 86 ~~~~~~~~~~~~~ig~~l~~~~~g~G~~tea~~~~l~~~f~~~-~l~ri~~~~~~~N~~S~rv~ek~Gf~~eg~~~~~~~ 164 (187)
T COG1670 86 SDIDRAANGDLAEIGYWLDPEYWGKGYATEALRALLDYAFEEL-GLHRIEATVDPENEASIRVYEKLGFRLEGELRQHEF 164 (187)
T ss_pred EEeccccccceEEEEEEEChHHhcCchHHHHHHHHHHHhhhhc-CceEEEEEecCCCHHHHHHHHHcCChhhhhhhhcee
Confidence 98773 2333499999999999999999999999999999988 999999999999999999999999999999999888
Q ss_pred cCCEEeEeEEEEeeccC
Q 030910 153 VKGKSVDIVVFSTVEAD 169 (169)
Q Consensus 153 ~~g~~~d~~~~~~~~~~ 169 (169)
.+|.+.|.+.|+++++|
T Consensus 165 ~~g~~~d~~~~~~~~~e 181 (187)
T COG1670 165 IKGRWRDTVLYSLLRDE 181 (187)
T ss_pred eCCeeeeEEEEEEechh
Confidence 88999999999999865
No 9
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.93 E-value=8e-24 Score=132.92 Aligned_cols=160 Identities=15% Similarity=0.155 Sum_probs=130.5
Q ss_pred EEEeeCCCCChhhHHhhcCCccccccccC-CCcCChHHHHHHHHHhhccCCeEEEEEE-CCeEEEEEEEEeCCCCCC--c
Q 030910 7 ITLRPFKISDVDDFMGWAGDENVTKYCRW-NTFTFRDDAVAFLKEVIKSHPWYRAICV-KDRPIGSIYVMPGIGKDE--R 82 (169)
Q Consensus 7 i~ir~~~~~d~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vG~~~~~~~~~~~~--~ 82 (169)
+.||+.+.+|++.+.+++++.-......+ ..+++.+...+|+.......-..+++.. +|+++|++.+.+....+. .
T Consensus 2 ~~ir~~~~~Dl~~I~~IY~~~v~~~~a~~e~~~~~~~~~~~~~~~~~~~g~p~~V~~~~~g~v~G~a~~~~fr~r~ay~~ 81 (169)
T COG1247 2 MEIRPATAADLEAILEIYNGAVENTAATFEEDPVSLEERAAWFSGRTRDGYPVVVAEEEDGKVLGYASAGPFRERPAYRH 81 (169)
T ss_pred cEEecChHHhHHHHHHHHHHhhhcceEEEeccCCCHHHHHHHHHhcccCCceEEEEEcCCCeEEEEEEeeeccCccccce
Confidence 67999999999999999987533332222 4456788888888876554323333334 599999999999876443 3
Q ss_pred EEEEEEEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeEEeeeeecCCEEeEeEE
Q 030910 83 RGEIGYAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGLLRKYFFVKGKSVDIVV 162 (169)
Q Consensus 83 ~~~i~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~~~~~~~~~g~~~d~~~ 162 (169)
..+..++|+|+.||+|+|+++++.+++.+ ... |+..+.+.+..+|.+|+++++++||+..|+.++.-...|.|.|+++
T Consensus 82 tve~SiYv~~~~~g~GiG~~Ll~~Li~~~-~~~-g~~~lva~I~~~n~aSi~lh~~~GF~~~G~~~~vg~k~g~wld~~~ 159 (169)
T COG1247 82 TVELSIYLDPAARGKGLGKKLLQALITEA-RAL-GVRELVAGIESDNLASIALHEKLGFEEVGTFPEVGDKFGRWLDLVL 159 (169)
T ss_pred EEEEEEEECcccccccHHHHHHHHHHHHH-HhC-CeEEEEEEEcCCCcHhHHHHHHCCCEEeccccccccccceEEeeee
Confidence 37778999999999999999999999999 555 9999999999999999999999999999999988778899999999
Q ss_pred EEeecc
Q 030910 163 FSTVEA 168 (169)
Q Consensus 163 ~~~~~~ 168 (169)
|.+..+
T Consensus 160 ~~~~l~ 165 (169)
T COG1247 160 MQLLLE 165 (169)
T ss_pred eehhhc
Confidence 987654
No 10
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=99.91 E-value=1.7e-23 Score=143.55 Aligned_cols=152 Identities=16% Similarity=0.105 Sum_probs=119.3
Q ss_pred cceEEEeeCCCCChhhHHhhcCCccccccccCCCcCChHHHHHHHHHhhccCCeEEEEEECCeEEEEEEEEeCCCCCCcE
Q 030910 4 PIEITLRPFKISDVDDFMGWAGDENVTKYCRWNTFTFRDDAVAFLKEVIKSHPWYRAICVKDRPIGSIYVMPGIGKDERR 83 (169)
Q Consensus 4 ~~~i~ir~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~ 83 (169)
++.+.||+++++|++.+.+++.+.. ...+ .+..+ ..++.+...+....+++..+|++||++.+...... ..
T Consensus 113 ~~~~~IR~a~~~D~~~l~~L~~~v~--~~~~-~~~~~----~~~l~~~~~~~~~~~v~~~~g~iVG~~~~~~~~~~--~~ 183 (266)
T TIGR03827 113 PEGFTLRIATEDDADAMAALYRKVF--PTYP-FPIHD----PAYLLETMKSNVVYFGVEDGGKIIALASAEMDPEN--GN 183 (266)
T ss_pred CCceEEEECCHHHHHHHHHHHHHHh--ccCC-CCccC----HHHHHHHhcCCcEEEEEEECCEEEEEEEEecCCCC--Cc
Confidence 3568999999999999999987531 1111 11112 23444444444555666679999999987543322 22
Q ss_pred EEEE-EEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeEEeeeeecCCEEeEeEE
Q 030910 84 GEIG-YAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGLLRKYFFVKGKSVDIVV 162 (169)
Q Consensus 84 ~~i~-~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~~~~~~~~~g~~~d~~~ 162 (169)
++++ ++|+|+|||+|+|++|++.+++++.+ . ++..+.+.+...|.+|+++|+|+||+.+|+.++...++|.+.|+.+
T Consensus 184 ~eI~~i~V~P~yRG~GiG~~Ll~~l~~~a~~-~-g~~~l~~~~~~~n~~a~~ly~k~GF~~~G~l~n~~~i~G~~~d~~i 261 (266)
T TIGR03827 184 AEMTDFATLPEYRGKGLAKILLAAMEKEMKE-K-GIRTAYTIARASSYGMNITFARLGYAYGGTLVNNTNISGGFESMNI 261 (266)
T ss_pred EEEEEEEECHHHcCCCHHHHHHHHHHHHHHH-C-CCcEEEeehhhcchhHHHHHHHcCCccccEEeecceecCCccccee
Confidence 7786 88999999999999999999999965 4 9999999999999999999999999999999999999999999999
Q ss_pred EEee
Q 030910 163 FSTV 166 (169)
Q Consensus 163 ~~~~ 166 (169)
|...
T Consensus 262 ~~k~ 265 (266)
T TIGR03827 262 WYKQ 265 (266)
T ss_pred eeec
Confidence 8763
No 11
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=99.90 E-value=1.1e-21 Score=124.33 Aligned_cols=137 Identities=18% Similarity=0.251 Sum_probs=100.8
Q ss_pred EeeCC-CCChhhHHhhcCCccccccccCCCcCChHHHHHHHHHhh-ccCCeEEEEEECCeEEEEEEEEeCCCCC---CcE
Q 030910 9 LRPFK-ISDVDDFMGWAGDENVTKYCRWNTFTFRDDAVAFLKEVI-KSHPWYRAICVKDRPIGSIYVMPGIGKD---ERR 83 (169)
Q Consensus 9 ir~~~-~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~vG~~~~~~~~~~~---~~~ 83 (169)
||+++ .+|++.|.+|++++.+..+... ..+.+....+.+... .+....+++..+|+++|++.+....... ...
T Consensus 1 ~R~a~~~~Dl~~i~~w~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~v~~~dg~~~g~~~~~~~~~~~~~~~~~ 78 (152)
T PF13523_consen 1 LRPATTPDDLPLILQWLNQPHVREFWDQ--DPSQEWVEEYPEQLEADPGHHPYVAEDDGEPIGYFEIYWPDEDYDADDGD 78 (152)
T ss_dssp EEE---GGGHHHHHHHHTSHHHHCCH-C--CCTHHHHHHHHHHHCHTTTEEEEEEEETTEEEEEEEEEEGGGSS---TTE
T ss_pred CeeCccHHHHHHHHHHHHhHHHHHHccC--CCCHHHHHHHHhhhcccCCceEEEEEECCEEEEEEEEecccccccCCCCE
Confidence 79999 9999999999999877766432 223344444444332 2334566667799999999997644321 222
Q ss_pred EEEE-EEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeEEe
Q 030910 84 GEIG-YAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGLLR 148 (169)
Q Consensus 84 ~~i~-~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~~~ 148 (169)
..++ ++++|++||+|+|+.+++.++++++++. +++.|.+.+.++|.+|+++|+|+||+.+|+..
T Consensus 79 ~~~~~~~~~~~~rg~G~g~~~~~~~~~~~~~~~-~~~~i~~~~~~~N~~~~~~~~k~GF~~~g~~~ 143 (152)
T PF13523_consen 79 RGIHRLIVDPEYRGQGLGKAMLRALIEFLFEDP-GVDRIVLDPHEDNTRAIRLYEKAGFRKVGEFE 143 (152)
T ss_dssp EEEEEEESTGGGTTSSHHHHHHHHHHHHHHTST-T--EEEEEEBTT-HHHHHHHHHTT-EEEEEEE
T ss_pred EEEeeeeechhhcCCCHHHHHHHHHHHHHHhCC-CCCEEEEecCcCCHHHHHHHHHcCCEEeeEEE
Confidence 4555 4568999999999999999999998876 89999999999999999999999999999974
No 12
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=99.90 E-value=6.5e-22 Score=124.57 Aligned_cols=143 Identities=13% Similarity=0.124 Sum_probs=108.1
Q ss_pred EEEeeCCCCChhhHHhhcCCccccccccCCCcCChHHHHHHHHHhhccCCeEEEEEECCeEEEEEEEEeCCCCCCcEEEE
Q 030910 7 ITLRPFKISDVDDFMGWAGDENVTKYCRWNTFTFRDDAVAFLKEVIKSHPWYRAICVKDRPIGSIYVMPGIGKDERRGEI 86 (169)
Q Consensus 7 i~ir~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~i 86 (169)
+.||+++++|++.+.++..++.... | +.. .+. .........+.+..++++||++.+...... ....
T Consensus 2 ~~iR~~~~~D~~~l~~l~~~~~~~~---~----~~~---~~~-~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~---~~~~ 67 (146)
T PRK09491 2 NTISSLTPADLPAAYHIEQRAHAFP---W----SEK---TFA-SNQGERYLNLKLTVNGQMAAFAITQVVLDE---ATLF 67 (146)
T ss_pred cchhcCChhhhHHHHHHHHhcCCCC---C----CHH---HHH-HHHhcCceEEEEEECCeEEEEEEEEeecCc---eEEE
Confidence 5799999999999999876543211 1 111 111 122222233445568999999998765432 1333
Q ss_pred EEEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeEEeeeeec-CCEEeEeEEEEe
Q 030910 87 GYAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGLLRKYFFV-KGKSVDIVVFST 165 (169)
Q Consensus 87 ~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~~~~~~~~-~g~~~d~~~~~~ 165 (169)
.+.|+|++||+|+|+++++.+++.+. +. ++..+.+.|.+.|.+|+++|+|+||+..+..+.+... +| +.|.+.|++
T Consensus 68 ~i~v~~~~rg~G~g~~ll~~~~~~~~-~~-~~~~~~~~~~~~N~~a~~~y~k~Gf~~~~~~~~~~~~~~~-~~d~~~~~~ 144 (146)
T PRK09491 68 NIAVDPDYQRQGLGRALLEHLIDELE-KR-GVATLWLEVRASNAAAIALYESLGFNEVTIRRNYYPTADG-REDAIIMAL 144 (146)
T ss_pred EEEECHHHccCCHHHHHHHHHHHHHH-HC-CCcEEEEEEccCCHHHHHHHHHcCCEEeeeeeccccCCCC-ceeEEEEec
Confidence 57899999999999999999999984 55 9999999999999999999999999999998887654 55 999999987
Q ss_pred e
Q 030910 166 V 166 (169)
Q Consensus 166 ~ 166 (169)
.
T Consensus 145 ~ 145 (146)
T PRK09491 145 P 145 (146)
T ss_pred c
Confidence 4
No 13
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=99.89 E-value=1.7e-21 Score=127.80 Aligned_cols=136 Identities=15% Similarity=0.179 Sum_probs=100.3
Q ss_pred eEEEeeCCCCChhhHHhhcCCcc-ccccccCCCcCChHH----HHHHHHHhhccC--CeEEEEEE-CCeEEEEEEEEeCC
Q 030910 6 EITLRPFKISDVDDFMGWAGDEN-VTKYCRWNTFTFRDD----AVAFLKEVIKSH--PWYRAICV-KDRPIGSIYVMPGI 77 (169)
Q Consensus 6 ~i~ir~~~~~d~~~l~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~--~~~~~~~~-~~~~vG~~~~~~~~ 77 (169)
.+.|||++++|.+.+.++++++. ...+. .+..+++. ...++....... ...+++.. +|++||++.+...+
T Consensus 43 ~~~lR~~~~~D~~~l~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~iiG~i~l~~~~ 120 (191)
T TIGR02382 43 DPGARVATETDIPALRQLASAAFALSRFR--APWYAPDDSGRFYAQWVENAVRGTFDHQCLILRDASGDPRGYVTLRELN 120 (191)
T ss_pred CCcceeCChhhHHHHHHHHHHHhhccccC--CCCcCHHHHHHHHHHHHHHHhcCCCCCeEEEEEccCCeEEEEEEEEecC
Confidence 46899999999999999998752 22221 11122222 234444433222 22333333 78999999998765
Q ss_pred CCCCcEEEEE-EEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeEEe
Q 030910 78 GKDERRGEIG-YAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGLLR 148 (169)
Q Consensus 78 ~~~~~~~~i~-~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~~~ 148 (169)
... ++++ ++|+|++||+|+|+++++.+++++++ . |+.+|.+.|.++|.+|++||+|+||+.+++..
T Consensus 121 ~~~---~~i~~l~V~p~~rGkG~G~~ll~~~~~~a~~-~-g~~~I~l~v~~~N~~A~~~Y~klGF~~~~~~~ 187 (191)
T TIGR02382 121 DTD---ARIGLLAVFPGAQSRGIGAELMQTALNWCYA-R-GLTRLRVATQMGNTAALRLYIRSGANIESTAY 187 (191)
T ss_pred CCc---eEEEEEEECHHHcCCCHHHHHHHHHHHHHHH-c-CCCEEEEEeCCCCHHHHHHHHHcCCcccccee
Confidence 322 6787 45899999999999999999999964 5 99999999999999999999999999988753
No 14
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=99.87 E-value=4e-21 Score=120.67 Aligned_cols=132 Identities=14% Similarity=0.090 Sum_probs=96.7
Q ss_pred ceEEEeeCCCCChhhHHhhcCCccccccccCCCcCChHHHHHHHHHhhcc-CCeEEEEEECCeEEEEEEEEeCCCCC--C
Q 030910 5 IEITLRPFKISDVDDFMGWAGDENVTKYCRWNTFTFRDDAVAFLKEVIKS-HPWYRAICVKDRPIGSIYVMPGIGKD--E 81 (169)
Q Consensus 5 ~~i~ir~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~vG~~~~~~~~~~~--~ 81 (169)
+.+.||+++++|++.+.+++.+.... . .+.+...+.+.+...+ ....+++..++++||++.+....... .
T Consensus 2 ~~~~ir~a~~~D~~~l~~l~~~~~~~------~-~~~~~~~~~~~~~l~~~~~~~~v~~~~~~ivG~~~~~~~~~~~~~~ 74 (144)
T PRK10146 2 PACELRPATQYDTDAVYALICELKQA------E-FDHQAFRVGFNANLRDPNMRYHLALLDGEVVGMIGLHLQFHLHHVN 74 (144)
T ss_pred CccEEeeCcHhhHHHHHHHHHHHhcc------c-CCHHHHHHHHHHHhcCCCceEEEEEECCEEEEEEEEEecccccccc
Confidence 46889999999999999987632111 1 1222323333333333 33445555689999999997643211 1
Q ss_pred cEEEE-EEEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEe
Q 030910 82 RRGEI-GYAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREG 145 (169)
Q Consensus 82 ~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~ 145 (169)
..+++ .++|+|++||+|+|+.+++.++++|.+. ++..+.+.+...|.+|++||+++||+..+
T Consensus 75 ~~~~i~~l~v~p~~rg~GiG~~Ll~~~~~~a~~~--~~~~i~l~~~~~n~~a~~fY~~~Gf~~~~ 137 (144)
T PRK10146 75 WIGEIQELVVMPQARGLNVGSKLLAWAEEEARQA--GAEMTELSTNVKRHDAHRFYLREGYEQSH 137 (144)
T ss_pred hhheeheeEECHHHcCCCHHHHHHHHHHHHHHHc--CCcEEEEecCCCchHHHHHHHHcCCchhh
Confidence 11445 4889999999999999999999999554 99999999999999999999999998764
No 15
>PRK03624 putative acetyltransferase; Provisional
Probab=99.87 E-value=2.5e-20 Score=116.35 Aligned_cols=129 Identities=12% Similarity=0.128 Sum_probs=94.8
Q ss_pred eEEEeeCCCCChhhHHhhcCCccccccccCCCcCChHHHHHHHHHhhc-cCCeEEEEEECCeEEEEEEEEeCCCCCCcEE
Q 030910 6 EITLRPFKISDVDDFMGWAGDENVTKYCRWNTFTFRDDAVAFLKEVIK-SHPWYRAICVKDRPIGSIYVMPGIGKDERRG 84 (169)
Q Consensus 6 ~i~ir~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~ 84 (169)
.+.||+++++|++.+.+++.+.... .+..+. ...+..... +....+++..++++||++.+...... ..
T Consensus 2 ~~~ir~~~~~d~~~i~~l~~~~~~~-----~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~vG~~~~~~~~~~---~~ 70 (140)
T PRK03624 2 AMEIRVFRQADFEAVIALWERCDLT-----RPWNDP---EMDIERKLNHDPSLFLVAEVGGEVVGTVMGGYDGHR---GW 70 (140)
T ss_pred ceEEEEcccccHHHHHHHHHhcCCC-----cchhhH---HHHHHHHhcCCCceEEEEEcCCcEEEEEEeeccCCC---ce
Confidence 4789999999999999998765211 111111 112222222 33455555568999999987643221 13
Q ss_pred EEEEEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeEE
Q 030910 85 EIGYAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGLL 147 (169)
Q Consensus 85 ~i~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~~ 147 (169)
...++|+|+|||+|+|+++++.++++++. . +++.+.+.+.+.|.+|+++|+|+||+..+..
T Consensus 71 i~~i~v~p~~rg~Gig~~ll~~~~~~~~~-~-~~~~~~~~~~~~N~~~~~~y~k~GF~~~~~~ 131 (140)
T PRK03624 71 AYYLAVHPDFRGRGIGRALVARLEKKLIA-R-GCPKINLQVREDNDAVLGFYEALGYEEQDRI 131 (140)
T ss_pred EEEEEECHHHhCCCHHHHHHHHHHHHHHH-C-CCCEEEEEEecCcHHHHHHHHHcCCccccEE
Confidence 33577999999999999999999999955 5 9999999999999999999999999987764
No 16
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=99.86 E-value=9.8e-21 Score=120.36 Aligned_cols=135 Identities=16% Similarity=0.080 Sum_probs=95.7
Q ss_pred EeeCCCCChhhHHhhcCCccccccccCCCcCChHHHHHHHHHhhccCCeEEEEEE-CCeEEEEEEEEeCCCCCCcEEEE-
Q 030910 9 LRPFKISDVDDFMGWAGDENVTKYCRWNTFTFRDDAVAFLKEVIKSHPWYRAICV-KDRPIGSIYVMPGIGKDERRGEI- 86 (169)
Q Consensus 9 ir~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vG~~~~~~~~~~~~~~~~i- 86 (169)
||+++.+|++.+.++..+..... .. .......+. .. .....+++.. ++++||++.+......... ..+
T Consensus 1 IR~~~~~D~~~i~~L~~~~~~~~---~~---~~~~~~~~~-~~--~~~~~~v~~~~~~~ivG~~~~~~~~~~~~~-~~i~ 70 (157)
T TIGR02406 1 FRPPRIEDGAGIWELVKDCPPLD---LN---SSYAYLLLC-TD--FADTSIVAESEGGEIVGFVSGYLRPDRPDV-LFVW 70 (157)
T ss_pred CCCCccccHHHHHHHHHhCCCCC---cc---cceehhhhh-hh--cCCcEEEEEcCCCeEEEEEEEEecCCCCCe-EEEE
Confidence 68999999999999987642111 00 111111111 11 1233445453 6799999987654433322 333
Q ss_pred EEEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeEEeeeeecCC
Q 030910 87 GYAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGLLRKYFFVKG 155 (169)
Q Consensus 87 ~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~~~~~~~~~g 155 (169)
.++|+|++||+|+|+++++.++++++.. ++..+.+.|.++|.+|++||+|+||+.....++..+.+|
T Consensus 71 ~l~V~p~~rg~GiG~~L~~~l~~~a~~~--~~~~i~~~v~~~N~~a~~ly~k~G~~~~~~~~~~~~~~~ 137 (157)
T TIGR02406 71 QVAVDPRARGKGLARRLLEALLERVACE--RVRHLETTITPDNQASRALFKALARRRGVHLIEEPFFDG 137 (157)
T ss_pred EEEEChHhccCcHHHHHHHHHHHHHHhC--CCCEEEEEEcCCCHHHHHHHHHhCcccCCCeEeeccccc
Confidence 5789999999999999999999999665 889999999999999999999999998777666554443
No 17
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=99.86 E-value=2.4e-20 Score=117.91 Aligned_cols=133 Identities=18% Similarity=0.150 Sum_probs=97.2
Q ss_pred ccceEEEeeCCCCChh-hHHhhcCCccccccccCCCcCChHHHHHHHHHhhccC-Ce-EEEEEE--CCeEEEEEEEEeCC
Q 030910 3 KPIEITLRPFKISDVD-DFMGWAGDENVTKYCRWNTFTFRDDAVAFLKEVIKSH-PW-YRAICV--KDRPIGSIYVMPGI 77 (169)
Q Consensus 3 ~~~~i~ir~~~~~d~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~--~~~~vG~~~~~~~~ 77 (169)
+++++.||+++++|.+ .+..++.+.. ..+..+.+...+++....... .. .+++.. ++++||++.+....
T Consensus 3 ~~~~~~ir~~~~~D~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~ 76 (150)
T PLN02706 3 TGEKFKVRRLEISDKSKGFLELLQQLT------VVGDVTEEEFEARFQELASLGDDHLICVIEDAASGRIIATGSVFVER 76 (150)
T ss_pred CCCceEEeEhhhcccchHHHHHHHhcc------CCCCCCHHHHHHHHHHHHhCCCcEEEEEEEeCCCCcEEEEEEEEEEe
Confidence 4678999999999998 4888775421 223456777778877655422 23 333334 58999999885322
Q ss_pred C---CCCcEEEE-EEEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeE
Q 030910 78 G---KDERRGEI-GYAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGL 146 (169)
Q Consensus 78 ~---~~~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~ 146 (169)
. .....+.+ .++|+|+|||+|+|++|++.++++|++ . ++++|.+.|.+.|. +||+|+||+.++.
T Consensus 77 ~~~~~~~~~~~i~~i~V~~~~rg~GiG~~ll~~~~~~a~~-~-g~~~i~l~~~~~N~---~~y~k~GF~~~g~ 144 (150)
T PLN02706 77 KFIRNCGKVGHIEDVVVDSAARGKGLGKKIIEALTEHARS-A-GCYKVILDCSEENK---AFYEKCGYVRKEI 144 (150)
T ss_pred ecccCCCcEEEEEEEEECHHHcCCCHHHHHHHHHHHHHHH-c-CCCEEEEEeccccH---HHHHHCcCEEehh
Confidence 1 11111233 278999999999999999999999965 5 99999999999995 5999999998874
No 18
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=99.86 E-value=3.7e-20 Score=121.80 Aligned_cols=136 Identities=15% Similarity=0.141 Sum_probs=99.3
Q ss_pred eEEEeeCCCCChhhHHhhcCCccc-cccccCCCcCChHHHH----HHHHHhhcc--CCeEEEEEE-CCeEEEEEEEEeCC
Q 030910 6 EITLRPFKISDVDDFMGWAGDENV-TKYCRWNTFTFRDDAV----AFLKEVIKS--HPWYRAICV-KDRPIGSIYVMPGI 77 (169)
Q Consensus 6 ~i~ir~~~~~d~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~--~~~~~~~~~-~~~~vG~~~~~~~~ 77 (169)
...||+++++|++.+.++.++... ..+. .+..+.+... .|+...... ....+++.. +|++||++.+....
T Consensus 46 ~~~iR~a~~~D~~~i~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~vG~~~l~~~~ 123 (194)
T PRK10975 46 TTGARVATETDIPALRQLAAQAFAQSRFR--APWYAPDDSGRFYAQWIENAVRGTFDHQCLLLRDASGQIQGFVTLRELN 123 (194)
T ss_pred CCCcccCCcccHHHHHHHHHHHhhhcccc--CccCChhHHHHHHHHHHHHhhccccCCcEEEEEcCCCCEEEEEEEEecC
Confidence 467899999999999999876422 1121 2222333333 333332211 113333333 68999999998754
Q ss_pred CCCCcEEEEE-EEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeEEe
Q 030910 78 GKDERRGEIG-YAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGLLR 148 (169)
Q Consensus 78 ~~~~~~~~i~-~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~~~ 148 (169)
... ++++ ++|+|++||+|+|+++++.+++++++ . +++++.+.|.++|.+|++||+|+||+.+++..
T Consensus 124 ~~~---~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~~-~-g~~~i~l~v~~~N~~a~~~yek~Gf~~~~~~~ 190 (194)
T PRK10975 124 DTD---ARIGLLAVFPGAQGRGIGARLMQAALNWCQA-R-GLTRLRVATQMGNLAALRLYIRSGANIESTAY 190 (194)
T ss_pred CCc---eEEEEEEEChhhcCCCHHHHHHHHHHHHHHH-c-CCCEEEEEeCCCcHHHHHHHHHCCCeEeEEEe
Confidence 322 6677 55899999999999999999999965 4 99999999999999999999999999998864
No 19
>PTZ00330 acetyltransferase; Provisional
Probab=99.85 E-value=1.9e-19 Score=113.38 Aligned_cols=131 Identities=11% Similarity=0.041 Sum_probs=93.4
Q ss_pred ceEEEeeCCCCChhhHHhhcCCccccccccCCCcCChHHHHHHHHHhhccCC--eEEEEEECCeEEEEEEEEeCCCC---
Q 030910 5 IEITLRPFKISDVDDFMGWAGDENVTKYCRWNTFTFRDDAVAFLKEVIKSHP--WYRAICVKDRPIGSIYVMPGIGK--- 79 (169)
Q Consensus 5 ~~i~ir~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~vG~~~~~~~~~~--- 79 (169)
.++.||+++++|.+.+.+++.... ..+..+.+....+......... ..+++..+|++||++.+...+..
T Consensus 5 ~~~~ir~~~~~D~~~i~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~ 78 (147)
T PTZ00330 5 GSLELRDLEEGDLGSVLELLSHLT------SAPALSQEELEQIAARRRLAGVVTRVFVHSPTQRIVGTASLFVEPKFTRG 78 (147)
T ss_pred ceEEEEEcccccHHHHHHHHHHhc------CCCccchhHHHHHHHHHhcCCCceEEEEEeCCCEEEEEEEEEeccccccC
Confidence 468999999999999999875421 1233355555665554322222 22333348999999998754321
Q ss_pred CCcEEEE-EEEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeE
Q 030910 80 DERRGEI-GYAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGL 146 (169)
Q Consensus 80 ~~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~ 146 (169)
....+.+ .++|+|++||+|+|+++++.+++++++. ++..+.+.+ |.+|++||+++||+....
T Consensus 79 ~~~~~~i~~~~V~~~~rg~Gig~~l~~~~~~~a~~~--~~~~l~l~~---n~~a~~~y~k~GF~~~~~ 141 (147)
T PTZ00330 79 GKCVGHIEDVVVDPSYRGQGLGRALISDLCEIARSS--GCYKVILDC---TEDMVAFYKKLGFRACER 141 (147)
T ss_pred CCceEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHC--CCCEEEEec---ChHHHHHHHHCCCEEece
Confidence 1111344 4889999999999999999999999654 888887654 889999999999998754
No 20
>PRK10514 putative acetyltransferase; Provisional
Probab=99.85 E-value=5.3e-20 Score=115.70 Aligned_cols=141 Identities=13% Similarity=0.154 Sum_probs=101.0
Q ss_pred EEEeeCCCCChhhHHhhcCCccccccccCCCcCChHHHHHHHHHhhccCCeEEEEE-ECCeEEEEEEEEeCCCCCCcEEE
Q 030910 7 ITLRPFKISDVDDFMGWAGDENVTKYCRWNTFTFRDDAVAFLKEVIKSHPWYRAIC-VKDRPIGSIYVMPGIGKDERRGE 85 (169)
Q Consensus 7 i~ir~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vG~~~~~~~~~~~~~~~~ 85 (169)
+.||+++++|++.+.+++.+...... .+....+.+....++...... ...+++. .++++||++.+.... .
T Consensus 2 ~~ir~~~~~D~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~iG~~~~~~~~------~- 72 (145)
T PRK10514 2 ISIRRSRHEEGERLVAIWRRSVDATH-DFLSAEDRAEIEELVRSFLPE-APLWVAVDERDQPVGFMLLSGGH------M- 72 (145)
T ss_pred ceeeecchhhHHHHHHHHHHHHHHhC-cccCchhHHHHHHHHHHHhcc-CceEEEEecCCcEEEEEEEecCc------E-
Confidence 57999999999999998865321111 111223445555555554433 3344444 489999999885321 1
Q ss_pred EEEEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeEEeeeeecCCEEeEeEEEEe
Q 030910 86 IGYAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGLLRKYFFVKGKSVDIVVFST 165 (169)
Q Consensus 86 i~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~~~~~~~~~g~~~d~~~~~~ 165 (169)
-+++|+|++||+|+|+++++.+++.+ +++.+.|...|.+|++||+|+||+.+++.+. ..+|...+.+.|+.
T Consensus 73 ~~~~v~p~~rgkGig~~Ll~~~~~~~-------~~i~~~v~~~N~~a~~~yek~Gf~~~~~~~~--~~~~~~~~~~~~~~ 143 (145)
T PRK10514 73 EALFVDPDVRGCGVGRMLVEHALSLH-------PELTTDVNEQNEQAVGFYKKMGFKVTGRSEV--DDQGRPYPLLHLAY 143 (145)
T ss_pred eEEEECHHhccCCHHHHHHHHHHHhc-------cccEEEeecCCHHHHHHHHHCCCEEeccccc--CCCCCccceEEEEe
Confidence 25889999999999999888877643 3467889999999999999999999998663 36788888888864
No 21
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=99.82 E-value=3.2e-18 Score=104.82 Aligned_cols=105 Identities=20% Similarity=0.345 Sum_probs=85.1
Q ss_pred eEEEEEEC--CeEEEEEEEEeCCCCCCcEEEEE-EEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHH
Q 030910 57 WYRAICVK--DRPIGSIYVMPGIGKDERRGEIG-YAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQ 133 (169)
Q Consensus 57 ~~~~~~~~--~~~vG~~~~~~~~~~~~~~~~i~-~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~ 133 (169)
..++++.+ +..||.+.+.........+++|. +.|++++||+|||++|++.+++.+.+. |++.|.+.+...|.+|.
T Consensus 56 ~~~~~a~d~~~~~VGai~ck~~~~r~~~rgyi~mLaV~~e~Rg~GIg~aLvr~aId~m~~~--g~~eVvLeTe~~n~~A~ 133 (165)
T KOG3139|consen 56 CFCFLALDEKGDTVGAIVCKLDTHRNTLRGYIAMLAVDSEYRGQGIGKALVRKAIDAMRSR--GYSEVVLETEVTNLSAL 133 (165)
T ss_pred eEEEEEEcCCCceEEEEEEeccccCCcceEEEEEEEechhhccccHHHHHHHHHHHHHHHC--CCcEEEEeccccchHHH
Confidence 34444443 33699999988776553447775 789999999999999999999999665 99999999999999999
Q ss_pred HHHHHcCCeEEeEEeeeeecCCEEeEeEEEEee
Q 030910 134 RVMEKAGFIREGLLRKYFFVKGKSVDIVVFSTV 166 (169)
Q Consensus 134 ~~y~~~Gf~~~~~~~~~~~~~g~~~d~~~~~~~ 166 (169)
++|+++||+..++...++ .+|. |.+.+.+.
T Consensus 134 ~LY~sLGF~r~~r~~~YY-lng~--dA~rl~L~ 163 (165)
T KOG3139|consen 134 RLYESLGFKRDKRLFRYY-LNGM--DALRLKLF 163 (165)
T ss_pred HHHHhcCceEecceeEEE-ECCc--ceEEEEee
Confidence 999999999999987666 4544 66666554
No 22
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=99.82 E-value=9.7e-19 Score=107.96 Aligned_cols=99 Identities=20% Similarity=0.220 Sum_probs=79.0
Q ss_pred eEEEEEECCeEEEEEEEEeCCCCCCcEEEEEEEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHH
Q 030910 57 WYRAICVKDRPIGSIYVMPGIGKDERRGEIGYAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVM 136 (169)
Q Consensus 57 ~~~~~~~~~~~vG~~~~~~~~~~~~~~~~i~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y 136 (169)
..+++..++++||++.+....... ....++|+|++||+|+|+++++.++++++.. +++.+.+.+.+.|.+|++||
T Consensus 32 ~~~~~~~~~~~vg~~~~~~~~~~~---~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~~--~~~~i~~~~~~~n~~~~~~y 106 (131)
T TIGR01575 32 CYLLARIGGKVVGYAGVQIVLDEA---HILNIAVKPEYQGQGIGRALLRELIDEAKGR--GVNEIFLEVRVSNIAAQALY 106 (131)
T ss_pred eEEEEecCCeEEEEEEEEecCCCe---EEEEEEECHHHcCCCHHHHHHHHHHHHHHHc--CCCeEEEEEecccHHHHHHH
Confidence 334444489999999987654321 3346889999999999999999999999665 89999999999999999999
Q ss_pred HHcCCeEEeEEeeeeecCCEEeEeEE
Q 030910 137 EKAGFIREGLLRKYFFVKGKSVDIVV 162 (169)
Q Consensus 137 ~~~Gf~~~~~~~~~~~~~g~~~d~~~ 162 (169)
+++||+.++..+.+... +. .|.++
T Consensus 107 ~~~Gf~~~~~~~~~~~~-~~-~~~~~ 130 (131)
T TIGR01575 107 KKLGFNEIAIRRNYYPD-PG-EDAIV 130 (131)
T ss_pred HHcCCCccccccccccC-CC-ccccc
Confidence 99999999998876433 22 45444
No 23
>KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism]
Probab=99.81 E-value=1.3e-18 Score=105.39 Aligned_cols=137 Identities=14% Similarity=0.080 Sum_probs=97.5
Q ss_pred ceEEEeeCCCCChhhHHhhcCCccccccccCCCcCChHHHHHHHHHhhc-cCCeEEEEE-E---CCeEEEEEEEEeCCCC
Q 030910 5 IEITLRPFKISDVDDFMGWAGDENVTKYCRWNTFTFRDDAVAFLKEVIK-SHPWYRAIC-V---KDRPIGSIYVMPGIGK 79 (169)
Q Consensus 5 ~~i~ir~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~---~~~~vG~~~~~~~~~~ 79 (169)
.+++||+++++|.+.+.++...-.....+......+.+ .+-+.... +....+.+. . ++.++|++.+...-..
T Consensus 2 ~~~~IR~at~~D~~~i~rLikela~Fek~~~~v~~te~---~l~~~~F~d~~~~~~~v~~ie~~~~~~aGf~~yf~~yst 78 (163)
T KOG3216|consen 2 DNIRIRLATPKDCEDILRLIKELAEFEKLEDQVEATEE---NLARDGFIDPPFKHWLVAAIETSGEVVAGFALYFNNYST 78 (163)
T ss_pred CceEEEecCcccHHHHHHHHHHHHHHHHhccchhhchh---hhhhhhccCCCccEEEEEEEecCCCceeEEeeeeccccc
Confidence 46899999999999999988653222222111111222 22222122 222333332 2 7899999999887643
Q ss_pred CCc--EEEE-EEEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeE
Q 030910 80 DER--RGEI-GYAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGL 146 (169)
Q Consensus 80 ~~~--~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~ 146 (169)
... ...+ .++|.|+|||+|+|+.|++.+.+.| ..+ |+.+++..|...|.+|+.||++.|++..+.
T Consensus 79 W~~k~~iYleDlyV~e~yR~kG~Gs~Ll~~va~~A-~~~-G~~rv~w~vldwN~rAi~lY~k~gaq~l~~ 146 (163)
T KOG3216|consen 79 WLGKQGIYLEDLYVREQYRGKGIGSKLLKFVAEEA-DKL-GTPRVEWVVLDWNHRAILLYEKVGAQDLKE 146 (163)
T ss_pred ccccceEEEEeeEecchhcccChHHHHHHHHHHHH-HHc-CCCcEEEEEeccchhHHHHHHHhCccccce
Confidence 321 1344 3889999999999999999999999 555 999999999999999999999999998766
No 24
>PRK10562 putative acetyltransferase; Provisional
Probab=99.79 E-value=8.3e-18 Score=105.74 Aligned_cols=139 Identities=11% Similarity=0.135 Sum_probs=93.3
Q ss_pred EeeCCCCChhhHHhhcCCccccccccCCCcCChHHHHHHHHHhhccCCeEEEEEECCeEEEEEEEEeCCCCCCcEEEEE-
Q 030910 9 LRPFKISDVDDFMGWAGDENVTKYCRWNTFTFRDDAVAFLKEVIKSHPWYRAICVKDRPIGSIYVMPGIGKDERRGEIG- 87 (169)
Q Consensus 9 ir~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~i~- 87 (169)
|||++++|++.+.+++.+...... ++............+.+...+....+++..++++||++.+... ..++
T Consensus 2 ir~~~~~D~~~i~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~iG~~~~~~~-------~~i~~ 73 (145)
T PRK10562 2 IREYQPSDLPAILQLWLESTIWAH-PFIKEQYWRESAPLVRDVYLPAAQTWVWEEDGKLLGFVSVLEG-------RFVGA 73 (145)
T ss_pred cccccchhhHHHHHHHHHhccccC-CCCCHHHHHHhHHHhhhhhcCcccEEEEEECCEEEEEEEEeec-------cEEEE
Confidence 799999999999999865432111 1110000112223333333333445566668999999998542 2354
Q ss_pred EEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeEEeeeeecCCEEeEeEEEEee
Q 030910 88 YAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGLLRKYFFVKGKSVDIVVFSTV 166 (169)
Q Consensus 88 ~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~~~~~~~~~g~~~d~~~~~~~ 166 (169)
++|+|++||+|+|+.+++.+++. ++.+.+.+...|.+|++||+|+||+.++... ..+...+..+|...
T Consensus 74 ~~v~~~~rg~G~g~~ll~~~~~~-------~~~~~~~v~~~N~~s~~~y~k~Gf~~~~~~~----~~~~~~~~~~~~~~ 141 (145)
T PRK10562 74 LFVAPKAVRRGIGKALMQHVQQR-------YPHLSLEVYQKNQRAVNFYHAQGFRIVDSAW----QEETQHPTWIMSWQ 141 (145)
T ss_pred EEECHHHcCCCHHHHHHHHHHhh-------CCeEEEEEEcCChHHHHHHHHCCCEEccccc----cCCCCCEEEEEEec
Confidence 88999999999999988777552 3457888999999999999999999998742 22333567776654
No 25
>PRK09831 putative acyltransferase; Provisional
Probab=99.79 E-value=8.8e-18 Score=105.83 Aligned_cols=139 Identities=15% Similarity=0.151 Sum_probs=95.4
Q ss_pred EEEeeCCCCChhhHHhhcCCccccccccCCCcCChHHHHHH-------HHHhhccCCeEEEEEECCeEEEEEEEEeCCCC
Q 030910 7 ITLRPFKISDVDDFMGWAGDENVTKYCRWNTFTFRDDAVAF-------LKEVIKSHPWYRAICVKDRPIGSIYVMPGIGK 79 (169)
Q Consensus 7 i~ir~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~ 79 (169)
+.||+++++|++.+.++..+...... ....+.+....+ +..... ....+++..+|++||++.+...
T Consensus 1 ~~ir~a~~~D~~~l~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~iiG~~~~~~~--- 73 (147)
T PRK09831 1 IQIRNYQPGDFQQLCAIFIRAVTMTA---SQHYSPQQIAAWAQIDESRWKEKLA-KSQVRVAVINAQPVGFITCIEH--- 73 (147)
T ss_pred CccccCChhhHHHHHHHHHHHHHHhh---hhcCCHHHHHhccCCCHHHHHHHHh-cCceEEEEECCEEEEEEEehhc---
Confidence 35899999999999999765321111 111122222221 112222 2345555569999999988531
Q ss_pred CCcEEEEEEEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeEEeeeeecCCEEeE
Q 030910 80 DERRGEIGYAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGLLRKYFFVKGKSVD 159 (169)
Q Consensus 80 ~~~~~~i~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~~~~~~~~~g~~~d 159 (169)
..-.++|+|++||+|+|++|++.+++.+.. + .+. .|..+++||+|+||+.++..+ ...+|.+.|
T Consensus 74 ----~i~~~~v~p~~~g~GiG~~Ll~~~~~~~~~-------l--~v~-~~~~a~~~Y~k~Gf~~~g~~~--~~~~g~~~~ 137 (147)
T PRK09831 74 ----YIDMLFVDPEYTRRGVASALLKPLIKSESE-------L--TVD-ASITAKPFFERYGFQTVKQQR--VECRGEWFI 137 (147)
T ss_pred ----eeeeEEECHHHcCCCHHHHHHHHHHHHhhh-------e--Eee-cchhhHHHHHHCCCEEeeccc--eEECCEEEE
Confidence 222478999999999999999999987622 2 233 357899999999999999976 335799999
Q ss_pred eEEEEeecc
Q 030910 160 IVVFSTVEA 168 (169)
Q Consensus 160 ~~~~~~~~~ 168 (169)
.+.|.+...
T Consensus 138 ~~~m~~~~~ 146 (147)
T PRK09831 138 NFYMRYKPQ 146 (147)
T ss_pred eeEEEecCC
Confidence 999998754
No 26
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=99.77 E-value=1.5e-17 Score=94.68 Aligned_cols=79 Identities=25% Similarity=0.267 Sum_probs=69.4
Q ss_pred EECCeEEEEEEEEeCCCCC--CcEEEE-EEEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHH
Q 030910 62 CVKDRPIGSIYVMPGIGKD--ERRGEI-GYAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEK 138 (169)
Q Consensus 62 ~~~~~~vG~~~~~~~~~~~--~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~ 138 (169)
..+|++||++.+....... ...+.+ .++|+|+|||+|+|+.|++.+++++.+ . ++..+.+.+.++|.++++||+|
T Consensus 2 ~~~~~ivg~~~~~~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~L~~~~~~~~~~-~-g~~~i~~~~~~~n~~~~~~~~k 79 (83)
T PF00583_consen 2 EEDGQIVGFASLRPPPEPFDHGNHAYIHRLAVDPEYRGQGIGSKLLQAAEEWARK-R-GIKRIYLDVSPDNPAARRFYEK 79 (83)
T ss_dssp EETTEEEEEEEEEEEETTTTTTTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHH-T-TESEEEEEEETTGHHHHHHHHH
T ss_pred cCCCEEEEEEEEEECCCccccCCEEEEEEEEEcHHHhhCCCchhhhhhhhhhHHh-c-CccEEEEEEeCCCHHHHHHHHH
Confidence 4589999999999987652 122555 588999999999999999999999966 4 9999999999999999999999
Q ss_pred cCCe
Q 030910 139 AGFI 142 (169)
Q Consensus 139 ~Gf~ 142 (169)
+||+
T Consensus 80 ~Gf~ 83 (83)
T PF00583_consen 80 LGFE 83 (83)
T ss_dssp TTEE
T ss_pred cCCC
Confidence 9996
No 27
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=99.74 E-value=1.3e-16 Score=98.97 Aligned_cols=142 Identities=25% Similarity=0.312 Sum_probs=105.7
Q ss_pred ceEEEeeCCCCChhhHHhhcCCccccccc----cCCCcCChHHHHHHHHHhhcc------------CCeEEEEEECCeEE
Q 030910 5 IEITLRPFKISDVDDFMGWAGDENVTKYC----RWNTFTFRDDAVAFLKEVIKS------------HPWYRAICVKDRPI 68 (169)
Q Consensus 5 ~~i~ir~~~~~d~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~v 68 (169)
+.+.++.++..|..++.++........-. .+......+.+..|++..... ...+|.+..++++|
T Consensus 2 e~~~l~~p~L~~k~a~le~~~e~~~~~~~~~~~~~~~~~~~~~fed~L~~~~~~~~~~~~~~g~V~~~~y~~v~~d~~iv 81 (174)
T COG3981 2 EEMKLRRPTLKDKDAFLEMKKEFLTDGSTEAGAAWKADYEQEDFEDWLEDLTRQEPGNNLPEGWVPASTYWAVDEDGQIV 81 (174)
T ss_pred CcccccCCchhhHHHHHHHHHhhhhcCCcccCceeecccccccHHHHHHHHhccCCCcCCCCCceeceeEEEEecCCcEE
Confidence 34678888999999998877553222111 112222236677777774331 12344555589999
Q ss_pred EEEEEEeCCCCC--CcEEEEEEEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeE
Q 030910 69 GSIYVMPGIGKD--ERRGEIGYAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGL 146 (169)
Q Consensus 69 G~~~~~~~~~~~--~~~~~i~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~ 146 (169)
|++.++..-... ...+.||+.|.|+.||+|+|+++++..+..| +.+ ++++|.++|+++|.+|.+.-+++|-..+.+
T Consensus 82 G~i~lRh~Ln~~ll~~gGHIGY~VrPseR~KGYA~emLkl~L~~a-r~l-gi~~Vlvtcd~dN~ASrkvI~~NGGile~~ 159 (174)
T COG3981 82 GFINLRHQLNDFLLEEGGHIGYSVRPSERRKGYAKEMLKLALEKA-REL-GIKKVLVTCDKDNIASRKVIEANGGILENE 159 (174)
T ss_pred EEEEeeeecchHHHhcCCcccceeChhhhccCHHHHHHHHHHHHH-HHc-CCCeEEEEeCCCCchhhHHHHhcCCEEeEE
Confidence 999999875431 1127799999999999999999999999999 555 999999999999999999999999988877
Q ss_pred Ee
Q 030910 147 LR 148 (169)
Q Consensus 147 ~~ 148 (169)
+.
T Consensus 160 ~~ 161 (174)
T COG3981 160 FF 161 (174)
T ss_pred Ec
Confidence 54
No 28
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.74 E-value=1.7e-16 Score=118.36 Aligned_cols=133 Identities=16% Similarity=0.069 Sum_probs=95.9
Q ss_pred ceEEEeeC-CCCChhhHHhhcCCccccccccCCCcCChHHHHHHHHHhhccCCeEEEEEE--CCeEEEEEEEEeCC----
Q 030910 5 IEITLRPF-KISDVDDFMGWAGDENVTKYCRWNTFTFRDDAVAFLKEVIKSHPWYRAICV--KDRPIGSIYVMPGI---- 77 (169)
Q Consensus 5 ~~i~ir~~-~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~vG~~~~~~~~---- 77 (169)
..+.||++ +++|++.+.+++.... +.+ .+.+. +..........++++.. +|++||++......
T Consensus 81 ~g~~IR~~~~~~D~~~I~~L~~~~~------~~p-~~~~~---~~~~~~~~~~~~~vA~~~~~g~IVG~~~~~~~~~~~~ 150 (547)
T TIGR03103 81 RGFTVRRLRGPADVDAINRLYAARG------MVP-VRVDF---VLDHRHSRAITYLVAEDEASGAIIGTVMGVDHRKAFN 150 (547)
T ss_pred CCcEEEeCCChhHHHHHHHHHHhcC------CCC-CCHHH---HHHHhcCCCceEEEEEECCCCeEEEEEEEEecccccc
Confidence 45899997 6899999999987532 111 12222 22222223345555554 69999999764321
Q ss_pred CCCCcEEEEEEEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeEEee
Q 030910 78 GKDERRGEIGYAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGLLRK 149 (169)
Q Consensus 78 ~~~~~~~~i~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~~~~ 149 (169)
..........++|+|+|||+|+|++|++.+++++. +. |+..+.+.|..+|.+|++||+|+||+.++.+..
T Consensus 151 d~~~~~~i~~l~V~P~~Rg~GIG~~Ll~~l~e~a~-~~-G~~~i~L~V~~~N~~Ai~fY~klGf~~~~~y~~ 220 (547)
T TIGR03103 151 DPEHGSSLWCLAVDPQAAHPGVGEALVRALAEHFQ-SR-GCAYMDLSVMHDNEQAIALYEKLGFRRIPVFAL 220 (547)
T ss_pred CCCCCeEEEEEEECHHHcCCCHHHHHHHHHHHHHH-HC-CCCEEEEEEcCCCHHHHHHHHHCCCEEeeEEEE
Confidence 11112133468899999999999999999999985 45 999999999999999999999999998877653
No 29
>PHA00673 acetyltransferase domain containing protein
Probab=99.74 E-value=2.6e-16 Score=97.79 Aligned_cols=131 Identities=8% Similarity=-0.050 Sum_probs=92.3
Q ss_pred eCCCCChhhHHhhcCCccccccccCCCcCChHHHHHHHHHhhccCC-eEEEEEECCeEEEEEEEEeCCCCCC---cEEEE
Q 030910 11 PFKISDVDDFMGWAGDENVTKYCRWNTFTFRDDAVAFLKEVIKSHP-WYRAICVKDRPIGSIYVMPGIGKDE---RRGEI 86 (169)
Q Consensus 11 ~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~vG~~~~~~~~~~~~---~~~~i 86 (169)
.++.+|++.|.+++.+......... .... ......++....++. ..+++..+|++||++.+...+.... ..+.|
T Consensus 11 ~A~~~D~paI~~LLadd~l~~~r~d-~~~~-~~y~~af~ai~~dp~~~llVa~~~g~vVG~~~l~~~p~l~~~~~~~~~I 88 (154)
T PHA00673 11 FAELADAPTFASLCAEYAHESANAD-LAGR-APDHHAYAGMEAAGVAHFLGVFRGEELVGFACLLVTPVPHFKGQLIGTT 88 (154)
T ss_pred hccHhhHHHHHHHHHhccccccccc-cccc-chhHHHHHHHHhCCCcEEEEEEECCEEEEEEEEEEecCCccCCccEEEE
Confidence 4678999999999987221111111 1111 222222455544444 5555556999999999888774322 22556
Q ss_pred -EEEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeE
Q 030910 87 -GYAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGL 146 (169)
Q Consensus 87 -~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~ 146 (169)
.++|+|++||+|+|++|+++++++++.. |+..++++..|+ ...+.||.+.|++.+.+
T Consensus 89 e~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~--Gc~~lyis~~p~-~~tv~fy~~~g~~~~~~ 146 (154)
T PHA00673 89 ESIFVAAAHRPGGAGMALLRATEALARDL--GATGLYVSGPTE-GRLVQLLPAAGYRETNR 146 (154)
T ss_pred EEEEEChhccCCCHHHHHHHHHHHHHHHC--CCCEEEEecCCC-ccchHHHHhCCchhhch
Confidence 4889999999999999999999999555 999999987765 56899999999998754
No 30
>PRK07757 acetyltransferase; Provisional
Probab=99.74 E-value=1.2e-16 Score=101.17 Aligned_cols=121 Identities=20% Similarity=0.178 Sum_probs=86.8
Q ss_pred EEEeeCCCCChhhHHhhcCCccccccccCCCcCChHHHHHHHHHhhccCCeEEEEEECCeEEEEEEEEeCCCCCCcEEEE
Q 030910 7 ITLRPFKISDVDDFMGWAGDENVTKYCRWNTFTFRDDAVAFLKEVIKSHPWYRAICVKDRPIGSIYVMPGIGKDERRGEI 86 (169)
Q Consensus 7 i~ir~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~i 86 (169)
+.||+++++|++.+.++.++..... .....+.+.... .. ...+++..+|++||++.+....... +++
T Consensus 2 ~~ir~~~~~D~~~l~~l~~~~~~~~---~~~~~~~~~~~~----~~---~~~~i~~~~~~lvG~~~l~~~~~~~---~~i 68 (152)
T PRK07757 2 MEIRKARLSDVKAIHALINVYAKKG---LMLPRSLDELYE----NI---RDFYVAEEEGEIVGCCALHILWEDL---AEI 68 (152)
T ss_pred ceEeeCCcccHHHHHHHHHHHHhcC---CccCCCHHHHHh----cc---CcEEEEEECCEEEEEEEEEeccCCc---eEE
Confidence 5799999999999999986432111 111112222221 11 2345556689999999998654321 566
Q ss_pred -EEEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeEE
Q 030910 87 -GYAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGLL 147 (169)
Q Consensus 87 -~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~~ 147 (169)
+++|+|++||+|+|++|+..+++++. +. ++..+.+.+. +.+||+|+||+.++..
T Consensus 69 ~~v~V~p~~rg~Glg~~Ll~~l~~~a~-~~-g~~~i~~~~~-----~~~~Y~k~GF~~~~~~ 123 (152)
T PRK07757 69 RSLAVSEDYRGQGIGRMLVEACLEEAR-EL-GVKRVFALTY-----QPEFFEKLGFREVDKE 123 (152)
T ss_pred EEEEECHHHcCCCHHHHHHHHHHHHHH-hC-CCCeEEEEeC-----cHHHHHHCCCEEcccc
Confidence 68999999999999999999999995 45 8888876553 4689999999998763
No 31
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=99.73 E-value=4.5e-16 Score=108.56 Aligned_cols=138 Identities=15% Similarity=0.066 Sum_probs=91.2
Q ss_pred ceEEEeeCCC-CChhhHHhhcCCccccccccCCCcCChHHHHHHHHHhhccCCeEEEEEE--CCeEEEEEEEEeCCCCCC
Q 030910 5 IEITLRPFKI-SDVDDFMGWAGDENVTKYCRWNTFTFRDDAVAFLKEVIKSHPWYRAICV--KDRPIGSIYVMPGIGKDE 81 (169)
Q Consensus 5 ~~i~ir~~~~-~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~vG~~~~~~~~~~~~ 81 (169)
+.+.+|+++. .|.+.+.++.+... ...+.....+.+................+++.. ++++||++.+........
T Consensus 148 ~g~~~r~~~~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~vG~~~~~~~~~~~~ 225 (292)
T TIGR03448 148 DGVTVRAYVGAPDDAEWLRVNNAAF--AWHPEQGGWTRADLAERRAEPWFDPAGLFLAFDDAPGELLGFHWTKVHPDEPA 225 (292)
T ss_pred CCeEeeccCCCcchHHHHHHHHHHh--hCCCccCCcCHHHHHHHhhCcCCCcCceEEEEECCCCcEEEEEEEEecCCCCc
Confidence 4688999864 47777776643211 000001112233333322221112233455555 589999986665432221
Q ss_pred cEEEEE-EEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeEE
Q 030910 82 RRGEIG-YAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGLL 147 (169)
Q Consensus 82 ~~~~i~-~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~~ 147 (169)
. .++. +.|+|+|||+|+|+.++..++++++.. ++..+.+.|.++|.+|++||+|+||+..++.
T Consensus 226 ~-~~i~~~~V~p~~rg~GiG~~ll~~~~~~~~~~--g~~~v~l~v~~~N~~a~~~y~k~GF~~~~~~ 289 (292)
T TIGR03448 226 L-GEVYVVGVDPAAQGRGLGDALTLIGLHHLAAR--GLPAVMLYVEADNEAAVRTYEKLGFTVAEVD 289 (292)
T ss_pred e-eEEEEEEECHHHcCCCHHHHHHHHHHHHHHHC--CCCEEEEEEeCCCHHHHHHHHHcCCEEcccc
Confidence 1 4454 679999999999999999999999664 9999999999999999999999999987653
No 32
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=99.71 E-value=9.5e-16 Score=99.40 Aligned_cols=137 Identities=19% Similarity=0.186 Sum_probs=94.9
Q ss_pred ceEEEeeCCCCChh--hHHhhcCCccccccccCCCcCChHHHHHHHHHhhccCCeEEEEEEC----C----eEEEEEEEE
Q 030910 5 IEITLRPFKISDVD--DFMGWAGDENVTKYCRWNTFTFRDDAVAFLKEVIKSHPWYRAICVK----D----RPIGSIYVM 74 (169)
Q Consensus 5 ~~i~ir~~~~~d~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~----~~vG~~~~~ 74 (169)
....+|++...|.. .+..+....... . ...+.......+. ......++... + .++|++...
T Consensus 10 ~~~~ir~~~~~d~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~l~----~~~~~~~v~~~~~~~~~~~~~~~G~~~~~ 80 (177)
T COG0456 10 DKVTIREAINKDLLDVALAALEARTFDI----R-LPWSREYFEKDLT----QAPELLLVAETGGLDGLLDGKVVGFLLVR 80 (177)
T ss_pred cceehhhhhhcccchHHHHHHhhhcCCC----C-CcchHHHHHHHHh----hCcceeEEEEecccCCCcccceeEEEEEE
Confidence 45778899999988 666654432110 0 1123333333333 23334444332 3 599999997
Q ss_pred eCCCCCC--cEEEE-EEEeCCCccCcChHHHHHHHHHHHHHHhcCCc-eeEEEEeeccCHHHHHHHHHcCCeEEeEEeee
Q 030910 75 PGIGKDE--RRGEI-GYAISAKYWGKGVATEAVKIAVACAFKELKYL-DRIEGLVFSENKASQRVMEKAGFIREGLLRKY 150 (169)
Q Consensus 75 ~~~~~~~--~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~-~~v~~~~~~~N~~a~~~y~~~Gf~~~~~~~~~ 150 (169)
....... ..++| .+.|+|+|||+|+|++|++.+++.+... +. ..+.+.|.++|.+|++||+++||+..+..+.+
T Consensus 81 ~~~~~~~~~~~~~i~~iaV~p~~r~~Gig~~Ll~~~~~~~~~~--~~~~~~~L~V~~~N~~Ai~lY~~~GF~~~~~~~~y 158 (177)
T COG0456 81 VVDGRPSADHEGHIYNLAVDPEYRGRGIGRALLDEALERLRER--GLADKIVLEVRESNEAAIGLYRKLGFEVVKIRKNY 158 (177)
T ss_pred EecCCccccCccEEEEEEEChHhhcCCHHHHHHHHHHHHHHhc--CCCceEEEEEecCChHHHHHHHHcCCEEEeeehhh
Confidence 5443211 01445 5889999999999999999999999555 65 89999999999999999999999999998765
Q ss_pred ee
Q 030910 151 FF 152 (169)
Q Consensus 151 ~~ 152 (169)
+.
T Consensus 159 y~ 160 (177)
T COG0456 159 YA 160 (177)
T ss_pred cc
Confidence 53
No 33
>PHA01807 hypothetical protein
Probab=99.71 E-value=5.7e-16 Score=97.26 Aligned_cols=125 Identities=12% Similarity=0.024 Sum_probs=87.7
Q ss_pred eeCCCCChhhHHhhcCCccccccccCCCcCC-hHHHHHHHHHhhccCCeEEEEEECCeEEEEEEEEeCCCCCCcEEEE-E
Q 030910 10 RPFKISDVDDFMGWAGDENVTKYCRWNTFTF-RDDAVAFLKEVIKSHPWYRAICVKDRPIGSIYVMPGIGKDERRGEI-G 87 (169)
Q Consensus 10 r~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~i-~ 87 (169)
..++.+|+..+..+.... ...+....++.+ .+....+.....+.....+++..+|++||++.+...... +...+ +
T Consensus 7 ~~~~~~d~~~~~~l~l~~-l~e~p~~~~w~s~ee~~~~~~~~~~~~~~~~lva~~dg~lvG~~~l~~~~~~--~~~~i~~ 83 (153)
T PHA01807 7 VHAKAGTPSELQGLCWLA-IQELEEFTLFRSKEEALERILDSTESNDRTELLVFRDGKLAGIAVLVFEDDP--HVGPCLG 83 (153)
T ss_pred hhhhhCCHHHHHHHHHHH-HHhCccCCCCCChHHHHHHHHHHhhCCCceEEEEEECCEEEEEEEEEcCCCc--ceeeecc
Confidence 346778888888876432 111211111223 333344544444444555666679999999999766532 11333 2
Q ss_pred ---EEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHc
Q 030910 88 ---YAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKA 139 (169)
Q Consensus 88 ---~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~ 139 (169)
++|+|++||+|+|++|++.++++|.+ . ++..+.+.|..+|.+|++||++.
T Consensus 84 l~~lYV~pe~RG~GiG~~Ll~~~~~~Ar~-~-G~~~l~l~v~~~n~~a~~~y~~~ 136 (153)
T PHA01807 84 VQWQYVLPEYRNAGVAREFLRELIRLAGE-G-NLPLIAFSHREGEGRYTIHYRRV 136 (153)
T ss_pred ceeEEECHHHcCCCHHHHHHHHHHHHHHH-C-CCCEEEEEecCCcHHHHHHHHhc
Confidence 58999999999999999999999955 4 99999999999999999999985
No 34
>PRK07922 N-acetylglutamate synthase; Validated
Probab=99.71 E-value=3e-16 Score=100.88 Aligned_cols=124 Identities=19% Similarity=0.177 Sum_probs=88.7
Q ss_pred cceEEEeeCCCCChhhHHhhcCCccccccccCCCcCChHHHHHHHHHhhccCCeEEEEE-ECCeEEEEEEEEeCCCCCCc
Q 030910 4 PIEITLRPFKISDVDDFMGWAGDENVTKYCRWNTFTFRDDAVAFLKEVIKSHPWYRAIC-VKDRPIGSIYVMPGIGKDER 82 (169)
Q Consensus 4 ~~~i~ir~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vG~~~~~~~~~~~~~ 82 (169)
.+.+.+|+++++|.+.+.++....... ..........++.. ....+++. .++++||++.+......
T Consensus 3 ~~~i~iR~a~~~D~~~i~~L~~~~~~~------~~~~~~~~~~~~~~----~~~~~va~~~~~~iiG~~~~~~~~~~--- 69 (169)
T PRK07922 3 AGAITVRRARTSDVPAIKRLVDPYAQG------RILLEKNLVTLYEA----VQEFWVAEHLDGEVVGCGALHVMWED--- 69 (169)
T ss_pred CCCceeecCCHhhHHHHHHHHHHHhhc------CccccchHHHHHhh----cCcEEEEEecCCcEEEEEEEeecCCC---
Confidence 356899999999999999987531110 01111112222222 23455666 68999999988764432
Q ss_pred EEEEE-EEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeEE
Q 030910 83 RGEIG-YAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGLL 147 (169)
Q Consensus 83 ~~~i~-~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~~ 147 (169)
.+++. ++|+|++||+|+|+++++.+++++++ . ++..+.+.+. +++||+|+||+..+..
T Consensus 70 ~~~i~~l~V~p~~rgkGiG~~Ll~~~~~~a~~-~-g~~~l~~~~~-----~~~fY~k~GF~~~~~~ 128 (169)
T PRK07922 70 LAEIRTVAVDPAARGRGVGHAIVERLLDVARE-L-GLSRVFVLTF-----EVEFFARHGFVEIDGT 128 (169)
T ss_pred ceEEEEEEECHHHhCCCHHHHHHHHHHHHHHH-c-CCCEEEEEec-----cHHHHHHCCCEECccc
Confidence 26775 88999999999999999999999965 5 9999987664 3689999999997643
No 35
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=99.71 E-value=4.5e-16 Score=109.61 Aligned_cols=126 Identities=16% Similarity=0.140 Sum_probs=94.7
Q ss_pred eEEEeeCCCCChhhHHhhcCCccccccccCCCcCChHHHHHHHHHhhccCCeEEEEEE-----CCeEEEEEEEEeCCCCC
Q 030910 6 EITLRPFKISDVDDFMGWAGDENVTKYCRWNTFTFRDDAVAFLKEVIKSHPWYRAICV-----KDRPIGSIYVMPGIGKD 80 (169)
Q Consensus 6 ~i~ir~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~vG~~~~~~~~~~~ 80 (169)
.+.||+++++|++.+.++..... .+.......+.+....++.. . ..+++.. ++.+||++.+......
T Consensus 186 ~~~Ir~a~~~Dl~ri~~L~~~tn--qfn~~~~~~s~~~i~~~l~~----~-~~~~~~~~d~~gd~givG~~~~~~~~~~- 257 (320)
T TIGR01686 186 SLNISKNDEQNVQRVEELLGRTN--QFNATYTRLNQEDVAQHMQK----E-EIVTVSMSDRFGDSGIIGIFVFEKKEGN- 257 (320)
T ss_pred EEEEEECChhhhHHHHHHHHhHH--hhhccCccCCHHHHHHHhcC----C-CEEEEEEEecCCCCceEEEEEEEecCCc-
Confidence 47899999999999999986542 22212233456666666543 2 3333332 5789999998764322
Q ss_pred CcEEEE-EEEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEee--ccCHHHHHHHHHcCCeEE
Q 030910 81 ERRGEI-GYAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVF--SENKASQRVMEKAGFIRE 144 (169)
Q Consensus 81 ~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~--~~N~~a~~~y~~~Gf~~~ 144 (169)
+.| .++|+|++||+|+|+.+++.+++.+.+. |+..+.+.+. +.|.+|++||+++||+..
T Consensus 258 ---~~I~~l~vs~r~~grGig~~Ll~~l~~~a~~~--G~~~i~l~v~~~~~N~~A~~fY~~~GF~~~ 319 (320)
T TIGR01686 258 ---LFIDDLCMSCRALGRGVETRMLRWLFEQALDL--GNHNARLYYRRTERNMPFLSFYEQIGFEDE 319 (320)
T ss_pred ---EEEEEEEEcHhHhcCcHHHHHHHHHHHHHHHc--CCCeEEEEEeeCCCchHHHHHHHHcCCccC
Confidence 555 5899999999999999999999999655 9999999886 479999999999999854
No 36
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=99.68 E-value=2e-15 Score=91.43 Aligned_cols=83 Identities=22% Similarity=0.280 Sum_probs=62.8
Q ss_pred HHHHHhhccC-CeEEEEEECCeEEEEEEEEeCCCCCCcEEEE-EEEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEE
Q 030910 46 AFLKEVIKSH-PWYRAICVKDRPIGSIYVMPGIGKDERRGEI-GYAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEG 123 (169)
Q Consensus 46 ~~~~~~~~~~-~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~ 123 (169)
+.+.+..... ...+++..++++||++.+. +. ..+ .++|+|++||+|+|++|++.+++++ +. ++..+.+
T Consensus 33 ~~~~~~~~~~~~~~~v~~~~~~ivG~~~~~---~~----~~i~~l~v~p~~r~~Gig~~Ll~~~~~~~-~~--~~~~l~~ 102 (117)
T PF13673_consen 33 EDLEEYLEEGSHTIFVAEEGGEIVGFAWLE---PD----GEISHLYVLPEYRGRGIGRALLDAAEKEA-KD--GIRRLTV 102 (117)
T ss_dssp HHHHHHHCTCCCEEEEEEETTEEEEEEEEE---TC----EEEEEEEE-GGGTTSSHHHHHHHHHHHHH-TT--TCEEEEE
T ss_pred HHHHHHHHhcCCEEEEEEECCEEEEEEEEc---CC----CeEEEEEEChhhcCCcHHHHHHHHHHHHH-Hc--CCcEEEE
Confidence 3444444443 4667777799999999997 11 335 3889999999999999999999988 54 6777776
Q ss_pred EeeccCHHHHHHHHHcCC
Q 030910 124 LVFSENKASQRVMEKAGF 141 (169)
Q Consensus 124 ~~~~~N~~a~~~y~~~Gf 141 (169)
. .|.+|.+||+++||
T Consensus 103 ~---~~~~a~~~y~~~GF 117 (117)
T PF13673_consen 103 E---ANERARRFYRKLGF 117 (117)
T ss_dssp E---C-HHHHHHHHHTT-
T ss_pred E---eCHHHHHHHHhCCC
Confidence 5 89999999999998
No 37
>KOG4135 consensus Predicted phosphoglucosamine acetyltransferase [Carbohydrate transport and metabolism]
Probab=99.68 E-value=2.7e-15 Score=90.53 Aligned_cols=142 Identities=23% Similarity=0.291 Sum_probs=112.7
Q ss_pred ccceEEEeeCCCCChhhHHhhcCCccccccccCCCcCChHHHHHHHHHhhccCC-eEEEEEE-----C-----CeEEEEE
Q 030910 3 KPIEITLRPFKISDVDDFMGWAGDENVTKYCRWNTFTFRDDAVAFLKEVIKSHP-WYRAICV-----K-----DRPIGSI 71 (169)
Q Consensus 3 ~~~~i~ir~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~-----~~~vG~~ 71 (169)
...++.+.|+++.+.+..++|+.+..........+ .+.++..++...|..+.. ..|.+.+ . ...||-+
T Consensus 10 ~~~kvILVPYe~~HV~kYHeWMknEelr~LT~SE~-LtLdeEyeMQ~sW~~DeDKlTFIVLdaE~~ea~~~ev~~MvGDv 88 (185)
T KOG4135|consen 10 LGKKVILVPYEPCHVPKYHEWMKNEELRRLTASEP-LTLDEEYEMQKSWREDEDKLTFIVLDAEMNEAGEDEVDHMVGDV 88 (185)
T ss_pred ecceEEEeeccccchhHHHhHhhhHHHHHhhcCCC-cchhHHHHhhhhhccCCcceEEEEEechhcccCchhHhhhccce
Confidence 35678999999999999999999988877765444 466666677777766544 4555553 1 2478888
Q ss_pred EEEeCCCCC-------CcEEEEEEEe-CCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeE
Q 030910 72 YVMPGIGKD-------ERRGEIGYAI-SAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIR 143 (169)
Q Consensus 72 ~~~~~~~~~-------~~~~~i~~~v-~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~ 143 (169)
.+......+ ...+++.++| .|..||+|+|++++.+++.|+...+ ++.+..+.+..+|.+++++|+|++|..
T Consensus 89 NlFlt~~~~~~n~s~~~~~gE~EvMIAEP~~RgKG~G~eav~~ml~y~~s~l-~l~Ky~vkig~~nk~sl~lFkk~~f~q 167 (185)
T KOG4135|consen 89 NLFLTTSPDTENPSDDVITGEVEVMIAEPRGRGKGIGTEAVRAMLAYAYSVL-KLDKYEVKIGMDNKPSLRLFKKFLFTQ 167 (185)
T ss_pred eeEEecCCCcCCcccceeeeeEEEEEecccccCCCccHHHHHHHHHHHHHHh-hhheEEEEecCCCchHHHHHHHhhhee
Confidence 877655432 2236776666 6999999999999999999999998 999999999999999999999999988
Q ss_pred EeE
Q 030910 144 EGL 146 (169)
Q Consensus 144 ~~~ 146 (169)
+..
T Consensus 168 ~~~ 170 (185)
T KOG4135|consen 168 VFY 170 (185)
T ss_pred eee
Confidence 766
No 38
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=99.66 E-value=4e-15 Score=91.44 Aligned_cols=122 Identities=13% Similarity=0.196 Sum_probs=81.9
Q ss_pred EEeeCCCCChhhHHhhcCCccccccccCCCcCChHHHHHHHHHhhccCCeEEEEEECCeEEEEEEEEeCCCCCC----cE
Q 030910 8 TLRPFKISDVDDFMGWAGDENVTKYCRWNTFTFRDDAVAFLKEVIKSHPWYRAICVKDRPIGSIYVMPGIGKDE----RR 83 (169)
Q Consensus 8 ~ir~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~----~~ 83 (169)
.||+++++|.+++.+++... | ....+......+...... ....+++.++|++||.+.+.+..-... ..
T Consensus 1 ~iR~~~~~d~~~i~~l~~~~----F---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ivg~~~~~~~~~~~~g~~~~~ 72 (127)
T PF13527_consen 1 EIRPLTESDFEQIIELFNEA----F---GDSESPPEIWEYFRNLYG-PGRCVVAEDDGKIVGHVGLIPRRLSVGGKKFKA 72 (127)
T ss_dssp -EEEE-GGGHHHHHHHHHHH----T---TT-CHHHHHHHHHHHHHH-TTEEEEEEETTEEEEEEEEEEEEEEETTEEEEE
T ss_pred CceECCHHHHHHHHHHHHHH----C---CCCCCchhhhhhhhcccC-cCcEEEEEECCEEEEEEEEEEEEEEECCEEEEE
Confidence 48999999999999997632 2 111111123334444443 456777778999999999988632111 11
Q ss_pred EEE-EEEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEE
Q 030910 84 GEI-GYAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIRE 144 (169)
Q Consensus 84 ~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~ 144 (169)
+.+ .+.|+|++||+|+|++|++.+++.+.++ ++..+.+.. . +..||+++||+..
T Consensus 73 ~~i~~v~v~p~~R~~Gl~~~L~~~~~~~~~~~--g~~~~~l~~--~---~~~~Y~~~G~~~~ 127 (127)
T PF13527_consen 73 AYIGDVAVDPEYRGRGLGRQLMRALLERARER--GVPFIFLFP--S---SPPFYRRFGFEYA 127 (127)
T ss_dssp EEEEEEEE-GGGTTSSHHHHHHHHHHHHHHHT--T-SEEEEE---S---SHHHHHHTTEEEE
T ss_pred EEEEEEEECHHHcCCCHHHHHHHHHHHHHHhC--CCCEEEEec--C---ChhhhhcCCCEEC
Confidence 333 3778999999999999999999999655 788777654 2 3689999999863
No 39
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=99.63 E-value=1e-14 Score=101.73 Aligned_cols=127 Identities=12% Similarity=0.077 Sum_probs=86.9
Q ss_pred eeCCCCChhhHHhhcCCccccccccCCCcCChHHHHHHHHHhhccCCeEEEEEECCeEEEEEEEEeCCCCCCcEEEEEEE
Q 030910 10 RPFKISDVDDFMGWAGDENVTKYCRWNTFTFRDDAVAFLKEVIKSHPWYRAICVKDRPIGSIYVMPGIGKDERRGEIGYA 89 (169)
Q Consensus 10 r~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~i~~~ 89 (169)
.|++++|++++.++...... .. ..+..+.+. ...+..........+++..++++||++.+........ ....++
T Consensus 4 ~~l~~~d~~~v~~L~~~~~~--~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~--~~~~l~ 77 (292)
T TIGR03448 4 AALDADLRRDVRELLAAATA--VD-GVAPVSEQV-LRGLREPGAGHTRHLVAVDSDPIVGYANLVPARGTDP--AMAELV 77 (292)
T ss_pred ccCCHHHHHHHHHHHHHHHh--cC-CCCCCCHHH-HhhccccCCCCceEEEEEECCEEEEEEEEEcCCCCcc--eEEEEE
Confidence 46888999999998874322 11 122233332 2222221112234555666899999999887643221 233578
Q ss_pred eCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeEEe
Q 030910 90 ISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGLLR 148 (169)
Q Consensus 90 v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~~~ 148 (169)
|+|++||+|+|++|++.+++.+. ..+.+.+..+|.+|++||+++||+..+...
T Consensus 78 V~p~~rg~GiG~~Ll~~~~~~~~------~~~~~~~~~~n~~a~~fy~~~Gf~~~~~~~ 130 (292)
T TIGR03448 78 VHPAHRRRGIGRALIRALLAKGG------GRLRVWAHGDLPAARALASRLGLVPTRELL 130 (292)
T ss_pred ECHhhcCCCHHHHHHHHHHHhcc------CceEEEEcCCCHHHHHHHHHCCCEEccEEE
Confidence 99999999999999999998652 346777888999999999999999887543
No 40
>PRK10314 putative acyltransferase; Provisional
Probab=99.63 E-value=7.7e-15 Score=92.80 Aligned_cols=86 Identities=13% Similarity=0.018 Sum_probs=68.8
Q ss_pred CeEEEEEECCeEEEEEEEEeCCCCCCcEEEEE-EEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHH
Q 030910 56 PWYRAICVKDRPIGSIYVMPGIGKDERRGEIG-YAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQR 134 (169)
Q Consensus 56 ~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~i~-~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~ 134 (169)
...+++..++++||++.+......... +.++ ++|+|+|||+|+|++|++.+++++.... +...+.+.+ +..+..
T Consensus 48 ~~h~~~~~~~~~vg~~r~~~~~~~~~~-~~i~rv~V~~~~rG~GiG~~Lm~~~~~~~~~~~-~~~~i~L~a---~~~a~~ 122 (153)
T PRK10314 48 NRHILGWKNDELVAYARILKSDDDLEP-VVIGRVIVSEALRGEKVGQQLMSKTLESCTRHW-PDKPVYLGA---QAHLQN 122 (153)
T ss_pred cEEEEEEECCEEEEEEEEecCCCCCCC-EEEEEEEECHHHhCCCHHHHHHHHHHHHHHHHC-CCCcEEEeh---HHHHHH
Confidence 455666669999999999875432222 6676 8899999999999999999999996655 677777765 467889
Q ss_pred HHHHcCCeEEeE
Q 030910 135 VMEKAGFIREGL 146 (169)
Q Consensus 135 ~y~~~Gf~~~~~ 146 (169)
||+|+||+.++.
T Consensus 123 fY~k~GF~~~g~ 134 (153)
T PRK10314 123 FYQSFGFIPVTE 134 (153)
T ss_pred HHHHCCCEECCC
Confidence 999999999875
No 41
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=99.63 E-value=1.5e-14 Score=81.49 Aligned_cols=75 Identities=25% Similarity=0.340 Sum_probs=58.8
Q ss_pred eEEEEEECCeEEEEEEEEeCCCCCCcEEEEE-EEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHH
Q 030910 57 WYRAICVKDRPIGSIYVMPGIGKDERRGEIG-YAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRV 135 (169)
Q Consensus 57 ~~~~~~~~~~~vG~~~~~~~~~~~~~~~~i~-~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~ 135 (169)
..+++..++++||++.+...... ..+. +.|+|++||+|+|++|++.+.+.+ . ...+.+.+ |+.+..|
T Consensus 4 ~~~~~~~~~~ivG~~~~~~~~~~----~~i~~~~v~~~~rg~Gig~~ll~~~~~~~-~----~~~i~l~~---~~~~~~f 71 (79)
T PF13508_consen 4 RFFVAEDDGEIVGFIRLWPNEDF----AYIGYLAVDPEYRGKGIGSKLLNYLLEKA-K----SKKIFLFT---NPAAIKF 71 (79)
T ss_dssp EEEEEEETTEEEEEEEEEETTTE----EEEEEEEE-GGGTTSSHHHHHHHHHHHHH-T----CSEEEEEE---EHHHHHH
T ss_pred EEEEEEECCEEEEEEEEEEcCCE----EEEEEEEECHHHcCCCHHHHHHHHHHHHc-C----CCcEEEEE---cHHHHHH
Confidence 45666679999999999766542 5564 889999999999999999998877 2 24455554 5789999
Q ss_pred HHHcCCeE
Q 030910 136 MEKAGFIR 143 (169)
Q Consensus 136 y~~~Gf~~ 143 (169)
|+++||++
T Consensus 72 Y~~~GF~~ 79 (79)
T PF13508_consen 72 YEKLGFEE 79 (79)
T ss_dssp HHHTTEEE
T ss_pred HHHCcCCC
Confidence 99999975
No 42
>PLN02825 amino-acid N-acetyltransferase
Probab=99.62 E-value=5.8e-15 Score=108.47 Aligned_cols=122 Identities=13% Similarity=0.121 Sum_probs=89.0
Q ss_pred EEeeCCCCChhhHHhhcCCccccccccCCCcCChHHHHHHHHHhhccCCeEEEEEECCeEEEEEEEEeCCCCCCcEEEEE
Q 030910 8 TLRPFKISDVDDFMGWAGDENVTKYCRWNTFTFRDDAVAFLKEVIKSHPWYRAICVKDRPIGSIYVMPGIGKDERRGEIG 87 (169)
Q Consensus 8 ~ir~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~i~ 87 (169)
.||+++++|++.+.++........ .....+.+. +.... ..++++..+|++||++.+.+..... .+++.
T Consensus 369 ~IR~At~eDi~~I~~Li~~lee~g---~lv~rs~e~----le~ei---~~f~V~e~Dg~IVG~aal~~~~~~~--~aEI~ 436 (515)
T PLN02825 369 GTRMARVEDLAGIRQIIRPLEESG---ILVRRTDEE----LLRAL---DSFVVVEREGSIIACAALFPFFEEK--CGEVA 436 (515)
T ss_pred hheeCCHHHHHHHHHHHHHHHHcC---CCcCCCHHH----HHhcC---CcEEEEEECCEEEEEEEEEeecCCC--cEEEE
Confidence 489999999999999886422111 111122222 22221 2355556699999999988764322 27785
Q ss_pred -EEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeEE
Q 030910 88 -YAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGLL 147 (169)
Q Consensus 88 -~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~~ 147 (169)
++|+|+|||+|+|++|+++++++|.+. |++++.+.+ ..+.+||+++||+..+..
T Consensus 437 ~laV~P~yRGkGiG~~LL~~le~~Ar~~--G~~~L~Llt----t~a~~fY~k~GF~~~~~~ 491 (515)
T PLN02825 437 AIAVSPECRGQGQGDKLLDYIEKKAASL--GLEKLFLLT----TRTADWFVRRGFSECSIE 491 (515)
T ss_pred EEEECHHHcCCCHHHHHHHHHHHHHHHC--CCCEEEEEe----CcHHHHHHHCCCEEeChh
Confidence 899999999999999999999999554 999999876 347899999999998763
No 43
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=99.62 E-value=6.1e-15 Score=107.66 Aligned_cols=123 Identities=16% Similarity=0.166 Sum_probs=87.7
Q ss_pred EEEeeCCCCChhhHHhhcCCccccccccCCCcCChHHHHHHHHHhhccCCeEEEEEECCeEEEEEEEEeCCCCCCcEEEE
Q 030910 7 ITLRPFKISDVDDFMGWAGDENVTKYCRWNTFTFRDDAVAFLKEVIKSHPWYRAICVKDRPIGSIYVMPGIGKDERRGEI 86 (169)
Q Consensus 7 i~ir~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~i 86 (169)
..||+++++|++.+.+++....... +. ......+++... ..++++..+++++|++.+.+.... ..+++
T Consensus 283 ~~IR~at~~Dl~~I~~L~~~~~~~~---~~----~~~~~~~l~~~~---~~~~V~~~dg~iVG~~~~~~~~~~--~~~~I 350 (429)
T TIGR01890 283 ESIRQATIDDIGGIAALIRPLEEQG---IL----VRRSREYLEREI---SEFSIIEHDGNIIGCAALYPYAEE--DCGEM 350 (429)
T ss_pred hheEECCHHHHHHHHHHHHHHHHcC---Cc----hhhhHHHHHhhc---CcEEEEEECCEEEEEEEEEecCCC--CeEEE
Confidence 3699999999999999875321111 11 112233333322 234555568999999999876432 22677
Q ss_pred E-EEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeEE
Q 030910 87 G-YAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGLL 147 (169)
Q Consensus 87 ~-~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~~ 147 (169)
. ++|+|+|||+|+|++|+++++++|.+. ++..+.+. ..| +.+||+++||+.++..
T Consensus 351 ~~l~V~p~~Rg~GiG~~Ll~~l~~~A~~~--G~~~l~v~--~~~--a~~fY~k~GF~~~g~~ 406 (429)
T TIGR01890 351 ACLAVSPEYQDGGRGERLLAHIEDRARQM--GISRLFVL--TTR--TGHWFRERGFQTASVD 406 (429)
T ss_pred EEEEECHHHcCCCHHHHHHHHHHHHHHHc--CCCEEEEe--ecc--hHHHHHHCCCEECChh
Confidence 5 889999999999999999999999655 88887643 344 5799999999999873
No 44
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=99.61 E-value=2.1e-14 Score=87.71 Aligned_cols=136 Identities=14% Similarity=0.151 Sum_probs=101.8
Q ss_pred EEEeeCCCCChhhHHhh--cCCccccccccCCCcCChHHHHHHHHHhhccCCeEEEEEE-CCeEEEEEEEEeCCCC--CC
Q 030910 7 ITLRPFKISDVDDFMGW--AGDENVTKYCRWNTFTFRDDAVAFLKEVIKSHPWYRAICV-KDRPIGSIYVMPGIGK--DE 81 (169)
Q Consensus 7 i~ir~~~~~d~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vG~~~~~~~~~~--~~ 81 (169)
+.||.++++|+-.+... ++-| .--...-|+...++.+...+++.+ +|++||++......+. ..
T Consensus 2 m~iR~ar~~DL~~mQ~~Nl~~lp------------ENyqmkyylyh~lswp~lSyVA~D~~gkiVGYvlAkmee~p~~~~ 69 (193)
T KOG3235|consen 2 MNIRRARPDDLLEMQHCNLLNLP------------ENYQMKYYLYHGLSWPQLSYVAEDENGKIVGYVLAKMEEDPDDEP 69 (193)
T ss_pred cccccCCHHHHHHhhhcccccCc------------HHHhHHHHHHhhcccccceEEEEcCCCcEEEEeeeehhhcccCCC
Confidence 56888998888776653 1111 112233445445454556666665 8999999998876522 12
Q ss_pred cEEEE-EEEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHH-HcCCeEEeEEeeeeecCCE
Q 030910 82 RRGEI-GYAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVME-KAGFIREGLLRKYFFVKGK 156 (169)
Q Consensus 82 ~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~-~~Gf~~~~~~~~~~~~~g~ 156 (169)
..+.| .+.|..+||+.|+|++||.+..+-..+.. ++..|.++|..+|.+|+.+|+ .+||++....+.++ -+|+
T Consensus 70 ~hGhItSlaV~rs~RrlGla~kLm~qa~rAm~E~~-~A~yvsLHVR~SNraAl~LY~~tl~F~v~eve~kYY-adGe 144 (193)
T KOG3235|consen 70 PHGHITSLAVKRSYRRLGLAQKLMNQASRAMVEVY-EAKYVSLHVRKSNRAALHLYKNTLGFVVCEVEPKYY-ADGE 144 (193)
T ss_pred CCCeeEEeeehhhHHHhhHHHHHHHHHHHHHHHhh-cceEEEEeeecccHHHHHhhhhccceEEeecccccc-cccH
Confidence 12666 48899999999999999999998887888 999999999999999999999 99999999877765 4443
No 45
>KOG3396 consensus Glucosamine-phosphate N-acetyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.60 E-value=4.7e-14 Score=84.01 Aligned_cols=130 Identities=22% Similarity=0.262 Sum_probs=98.2
Q ss_pred ceEEEeeCCCCChhh-HHhhcCCccccccccCCCcCChHHHHHHHHHhhccCCeEEE-EEE---CCeEEEEEEEEeCCCC
Q 030910 5 IEITLRPFKISDVDD-FMGWAGDENVTKYCRWNTFTFRDDAVAFLKEVIKSHPWYRA-ICV---KDRPIGSIYVMPGIGK 79 (169)
Q Consensus 5 ~~i~ir~~~~~d~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~vG~~~~~~~~~~ 79 (169)
..+.+||+..+|+.. +.++++.-. .....+++++...+..+.....+++. +.. .+++||.+.+.....-
T Consensus 5 ~~~~lR~L~~~D~~kGf~elL~qLT------~vG~vt~e~F~krf~~mk~~~~~Y~i~Vied~~s~~vigtatL~IE~Kf 78 (150)
T KOG3396|consen 5 DGFKLRPLEEDDYGKGFIELLKQLT------SVGVVTREQFEKRFEAMKKSGDWYYIVVIEDKESEKVIGTATLFIERKF 78 (150)
T ss_pred CceEEeecccccccchHHHHHHHHh------hccccCHHHHHHHHHHHHhcCCcEEEEEEEeCCcCeEEEEEEEEEehhh
Confidence 348999999999986 777665422 13345788888888887776664443 333 6899999998765432
Q ss_pred C---CcEEEEE-EEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEe
Q 030910 80 D---ERRGEIG-YAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREG 145 (169)
Q Consensus 80 ~---~~~~~i~-~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~ 145 (169)
- ...+.+. ..|++++||+++|+.++..++..+ +.+ |+=++.+.|.+.|. .||+++||...+
T Consensus 79 Ih~~g~rGhiEDVVV~~~~rgk~LGkllv~~Lv~l~-k~l-gcYKi~LdC~~~nv---~FYeKcG~s~~~ 143 (150)
T KOG3396|consen 79 IHGCGSRGHIEDVVVDSEYRGKQLGKLLVETLVDLA-KSL-GCYKIILDCDPKNV---KFYEKCGYSNAG 143 (150)
T ss_pred hhcccccCceeEEEeChhhhhhHHhHHHHHHHHHHH-Hhc-CcEEEEEecchhhh---hHHHHcCccccc
Confidence 1 1114443 679999999999999999999999 555 99999999999985 599999998765
No 46
>PRK05279 N-acetylglutamate synthase; Validated
Probab=99.59 E-value=1.4e-14 Score=106.22 Aligned_cols=122 Identities=20% Similarity=0.168 Sum_probs=87.1
Q ss_pred EEEeeCCCCChhhHHhhcCCccccccccCCCcCChHHHHHHHHHhhccCCeEEEEEECCeEEEEEEEEeCCCCCCcEEEE
Q 030910 7 ITLRPFKISDVDDFMGWAGDENVTKYCRWNTFTFRDDAVAFLKEVIKSHPWYRAICVKDRPIGSIYVMPGIGKDERRGEI 86 (169)
Q Consensus 7 i~ir~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~i 86 (169)
+.||+++++|++.+.+++....... +....+.+ .+... ...++++..+++++|++.+....... .+++
T Consensus 295 ~~IR~at~~D~~~I~~L~~~~~~~~---~~~~~~~~----~l~~~---~~~~~va~~dg~iVG~~~~~~~~~~~--~~~I 362 (441)
T PRK05279 295 EQLRRATIDDVGGILELIRPLEEQG---ILVRRSRE----QLERE---IDKFTVIERDGLIIGCAALYPFPEEK--MGEM 362 (441)
T ss_pred HHeEeCCHHHHHHHHHHHHHHHHcC---CccccCHH----HHhcc---cCcEEEEEECCEEEEEEEEEEcCCCC--eEEE
Confidence 6799999999999999874211111 11111222 22221 12355566699999999888765321 2667
Q ss_pred E-EEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeE
Q 030910 87 G-YAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGL 146 (169)
Q Consensus 87 ~-~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~ 146 (169)
. ++|+|+|||+|+|++|++.+++++.+. ++..+.+. |.++++||+++||+..+.
T Consensus 363 ~~l~V~p~~Rg~GiG~~Ll~~l~~~a~~~--g~~~l~l~----~~~a~~fY~k~GF~~~g~ 417 (441)
T PRK05279 363 ACLAVHPDYRGSGRGERLLKRIEQRARQL--GLKRLFVL----TTRTAHWFLERGFVPVDV 417 (441)
T ss_pred EEEEECHHHcCCCHHHHHHHHHHHHHHHc--CCCEEEEe----cchHHHHHHHCcCEECCh
Confidence 4 889999999999999999999999554 88888754 346899999999999986
No 47
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=99.57 E-value=2.5e-14 Score=108.50 Aligned_cols=123 Identities=15% Similarity=0.118 Sum_probs=87.0
Q ss_pred ceEEEeeCCCCChhhHHhhcCCccccccccCCCcCChHHHHHHHHHhhccCCeEEEEEECCeEEEEEEEEeCCCCCCcEE
Q 030910 5 IEITLRPFKISDVDDFMGWAGDENVTKYCRWNTFTFRDDAVAFLKEVIKSHPWYRAICVKDRPIGSIYVMPGIGKDERRG 84 (169)
Q Consensus 5 ~~i~ir~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~ 84 (169)
..+.||+++++|.+.+.++....... ......+.+ .+. . ....++++..+|++||++.+...+.. . +
T Consensus 462 ~gm~IR~a~~~D~~~I~~L~~~~~~~---~~~~~~~~~---~l~-~---~~~~~~Va~~~g~IVG~~~l~~~~~~--~-~ 528 (614)
T PRK12308 462 SGVKVRPARLTDIDAIEGMVAYWAGL---GENLPRSRN---ELV-R---DIGSFAVAEHHGEVTGCASLYIYDSG--L-A 528 (614)
T ss_pred CCCEEEECCHHHHHHHHHHHHHHHhh---hcccccCHH---HHh-c---ccCcEEEEEECCEEEEEEEEEEcCCC--e-E
Confidence 44789999999999999986421100 011111111 111 1 22345556669999999998765432 1 5
Q ss_pred EE-EEEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeEE
Q 030910 85 EI-GYAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGLL 147 (169)
Q Consensus 85 ~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~~ 147 (169)
++ .++|+|+|||+|+|+.|++.+++++.+. ++..+.+.+ .+.+||+|+||+.+++.
T Consensus 529 ~I~~i~V~P~~rGkGIGk~Ll~~l~~~ak~~--g~~~i~l~~-----~a~~FYek~GF~~~~~~ 585 (614)
T PRK12308 529 EIRSLGVEAGWQVQGQGSALVQYLVEKARQM--AIKKVFVLT-----RVPEFFMKQGFSPTSKS 585 (614)
T ss_pred EEEEEEECHHHcCCCHHHHHHHHHHHHHHHC--CCCEEEEee-----CcHHHHHHCCCEECCcc
Confidence 56 5899999999999999999999999554 999888754 24689999999998864
No 48
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=99.57 E-value=2.1e-13 Score=90.56 Aligned_cols=134 Identities=21% Similarity=0.190 Sum_probs=91.8
Q ss_pred ceEEEeeCCCCChhhHHhhcCCccccccccCCCcCChHHHHHHHHHhhccCCeEEEEEECCeEEEEEEEEeCCCCCCcEE
Q 030910 5 IEITLRPFKISDVDDFMGWAGDENVTKYCRWNTFTFRDDAVAFLKEVIKSHPWYRAICVKDRPIGSIYVMPGIGKDERRG 84 (169)
Q Consensus 5 ~~i~ir~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~ 84 (169)
..+.+|.++..|.. +..+..++.+.. .++..+.+.......... ....+.+..+|++|..+......+.- +
T Consensus 132 ~~~~~r~a~~~D~~-i~~~~~~~~l~~---~g~~~~~~~~~~~~~a~g--~~~~~f~~~d~~iVa~A~t~a~~~~~---~ 202 (268)
T COG3393 132 EELDVRLAAAKDMF-IPEVGLRATLDD---FGRADSRKEAVAVLNALG--RSRTYFLEGDGKIVAKAETAAENPAY---A 202 (268)
T ss_pred ccceeeeeeccccc-chheeeeeeecc---cccCcchHHHHHHHHHhh--ceeEEEEccCCcEEEeeeccccCCcc---e
Confidence 45667777777765 333333322222 233334444444443332 23444445577999999988776533 6
Q ss_pred EE-EEEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeEEeee
Q 030910 85 EI-GYAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGLLRKY 150 (169)
Q Consensus 85 ~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~~~~~ 150 (169)
.| |.+++|+|||+|+|+.++..+......+. +.-.+.+..+|+.|.+.|+|+||+..|.+...
T Consensus 203 ~I~gV~T~peyR~kGyAt~lva~L~~~lL~eG---k~~~L~~~~~N~~A~~iY~riGF~~~g~~~~~ 266 (268)
T COG3393 203 QINGVYTHPEYRGKGYATALVATLAAKLLAEG---KIPCLFVNSDNPVARRIYQRIGFREIGEFREY 266 (268)
T ss_pred EEEEEEcCHHHccccHHHHHHHHHHHHHHhCC---CeeEEEEecCCHHHHHHHHHhCCeecceEEEE
Confidence 67 58899999999999999999999987874 33455577899999999999999999987654
No 49
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=99.57 E-value=7.6e-14 Score=85.76 Aligned_cols=121 Identities=21% Similarity=0.278 Sum_probs=88.8
Q ss_pred EEeeCCCCChhhHHhhcCCccccccccCCCcCChHHHHHHHHHhhccCCeEEEEEECCeEEEEEEEEeCCCCCCcEEEEE
Q 030910 8 TLRPFKISDVDDFMGWAGDENVTKYCRWNTFTFRDDAVAFLKEVIKSHPWYRAICVKDRPIGSIYVMPGIGKDERRGEIG 87 (169)
Q Consensus 8 ~ir~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~i~ 87 (169)
.||.++.+|.+.|.+++.......- --..+.+....-+.+ ++++..+|.++|++.+.+....+- +++.
T Consensus 2 ~iR~A~~~Di~~I~~Li~~~~~~gi---l~~rs~~~le~~i~d-------F~i~E~~g~viGC~aL~~~~~~~~--gE~~ 69 (153)
T COG1246 2 QIRKARISDIPAILELIRPLELQGI---LLRRSREQLEEEIDD-------FTIIERDGKVIGCAALHPVLEEDL--GELR 69 (153)
T ss_pred ceeeccccchHHHHHHHHHHhhccc---cchhhHHHHHHHHhh-------heeeeeCCcEEEEEeecccCccCe--eeEE
Confidence 6899999999999998764321110 001133333333332 456666999999999997443322 7774
Q ss_pred -EEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeE
Q 030910 88 -YAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGL 146 (169)
Q Consensus 88 -~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~ 146 (169)
+.|+|++||+|+|.+|++.++..| ++. |++++++-+. .+..||+++||+....
T Consensus 70 ~laV~pd~r~~G~G~~Ll~~~~~~A-r~~-gi~~lf~LTt----~~~~~F~~~GF~~vd~ 123 (153)
T COG1246 70 SLAVHPDYRGSGRGERLLERLLADA-REL-GIKELFVLTT----RSPEFFAERGFTRVDK 123 (153)
T ss_pred EEEECHHhcCCCcHHHHHHHHHHHH-HHc-CCceeeeeec----ccHHHHHHcCCeECcc
Confidence 889999999999999999999999 445 9999997664 5678999999998755
No 50
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=99.52 E-value=7.6e-13 Score=75.43 Aligned_cols=72 Identities=22% Similarity=0.130 Sum_probs=54.6
Q ss_pred CeEEEEEEEEeCCCCCCcEEEE-EEEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeE
Q 030910 65 DRPIGSIYVMPGIGKDERRGEI-GYAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIR 143 (169)
Q Consensus 65 ~~~vG~~~~~~~~~~~~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~ 143 (169)
+.+++++.-.+. +.| .+++.|++||+|+|+.++..+.+.+.++ +.. ..+.+..+|.+|+++|+|+||+.
T Consensus 10 ~~l~~~~~~~~~-------g~i~~v~t~p~~RrrGlg~~lv~~l~~~~~~~--g~~-~~l~v~~~N~~s~~ly~klGf~~ 79 (86)
T PF08445_consen 10 VALVAWIIRSDD-------GEIGGVYTLPEHRRRGLGSALVAALARELLER--GKT-PFLYVDADNEASIRLYEKLGFRE 79 (86)
T ss_dssp EEEEEEEEESCT-------CCEEEEEE-GGGTTSSHHHHHHHHHHHHHHHT--TSE-EEEEEETT-HHHHHHHHHCT-EE
T ss_pred cceeeEeeeCCC-------cEEEEEEECHHHcCCCHHHHHHHHHHHHHHhC--CCc-EEEEEECCCHHHHHHHHHcCCEE
Confidence 455665543222 335 4789999999999999999999998775 654 67889999999999999999999
Q ss_pred EeE
Q 030910 144 EGL 146 (169)
Q Consensus 144 ~~~ 146 (169)
...
T Consensus 80 ~~~ 82 (86)
T PF08445_consen 80 IEE 82 (86)
T ss_dssp EEE
T ss_pred EEE
Confidence 855
No 51
>PRK01346 hypothetical protein; Provisional
Probab=99.51 E-value=1.1e-12 Score=95.80 Aligned_cols=130 Identities=8% Similarity=0.006 Sum_probs=90.5
Q ss_pred ceEEEeeCCCCChhhHHhhcCCccccccccCCCcCChHHHHHHHHHhhccCCeEEEEEECCeEEEEEEEEeCCCC---C-
Q 030910 5 IEITLRPFKISDVDDFMGWAGDENVTKYCRWNTFTFRDDAVAFLKEVIKSHPWYRAICVKDRPIGSIYVMPGIGK---D- 80 (169)
Q Consensus 5 ~~i~ir~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~---~- 80 (169)
..+.||+++++|.+.+.++.... +. ...+.+....+... .. ....+++..++++||++.+.+.... .
T Consensus 5 ~~~~iR~~~~~D~~~i~~L~~~~----f~---~~~~~~~~~~~~~~-~~-~~~~~va~~~~~lvg~~~~~~~~~~~~~~~ 75 (411)
T PRK01346 5 MAITIRTATEEDWPAWFRAAATG----FG---DSPSDEELEAWRAL-VE-PDRTLGAFDGDEVVGTAGAFDLRLTVPGGA 75 (411)
T ss_pred CCceeecCCHHHHHHHHHHHHHH----cC---CCCChHHHHHHHHh-cC-cCCeEEEEECCEEEEEEEEeccccccCCCC
Confidence 45889999999999999986532 21 11134444444433 22 3345666678999999998764311 1
Q ss_pred -CcEEEE-EEEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeEEeee
Q 030910 81 -ERRGEI-GYAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGLLRKY 150 (169)
Q Consensus 81 -~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~~~~~ 150 (169)
...+.+ ++.|+|+|||+|+|++|++++++.+.+. |...+.+.+.. .+||+|+||........+
T Consensus 76 ~~~~~~i~~v~V~P~~RgrGig~~Ll~~~l~~a~~~--g~~~~~L~~~~-----~~~Y~r~Gf~~~~~~~~~ 140 (411)
T PRK01346 76 VLPAAGVTAVTVAPTHRRRGLLTALMREQLRRIRER--GEPVAALTASE-----GGIYGRFGYGPATYSQSL 140 (411)
T ss_pred ccceeEEEEEEEChhhcCCCHHHHHHHHHHHHHHHC--CCcEEEEECCc-----hhhHhhCCCeeccceEEE
Confidence 111333 5889999999999999999999999554 88777776543 369999999987765443
No 52
>KOG3138 consensus Predicted N-acetyltransferase [General function prediction only]
Probab=99.49 E-value=1.5e-13 Score=87.81 Aligned_cols=146 Identities=14% Similarity=0.150 Sum_probs=105.7
Q ss_pred EEEeeCCCCChhhHHhhcCCccccccccCCCcCChHHHHHHHHHhhccCCeEEEEEECCeEEEEEEEEeCCCCCC-----
Q 030910 7 ITLRPFKISDVDDFMGWAGDENVTKYCRWNTFTFRDDAVAFLKEVIKSHPWYRAICVKDRPIGSIYVMPGIGKDE----- 81 (169)
Q Consensus 7 i~ir~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~----- 81 (169)
+.++++++.++..+..+..+.. | .+-...|+..........-++..++..+|-+.+........
T Consensus 17 ~~l~~it~~nl~~~~~l~~~~f--------P---~~y~~kfy~~~~~~~~~~~~A~~~~~~v~a~~~k~~~~~~~~~r~~ 85 (187)
T KOG3138|consen 17 IELRLITPNNLKQLKQLNEDIF--------P---ISYVDKFYPDVLSNGDLTQLAYYNEIAVGAVACKLIKFVQNAKRLF 85 (187)
T ss_pred eeeccCCcchHHHHHHHhcccc--------C---cchHHHHHHHHHhcCCHHHhhhhccccccceeeeehhhhhhhhhhh
Confidence 8999999999999998865421 1 11122366666554444445555666777777766654331
Q ss_pred -c--EEEEEEEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeEEeeeeecCCEEe
Q 030910 82 -R--RGEIGYAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGLLRKYFFVKGKSV 158 (169)
Q Consensus 82 -~--~~~i~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~~~~~~~~~g~~~ 158 (169)
. ...+.+.|.|.||.+|+|+.+++.+.+++-... .++.+++++...|..++.||++.||+.+...+.++...+...
T Consensus 86 ~~~~~yi~~Lgvl~~yR~~gIGs~Ll~~~~~~~~~~~-~~~~v~lHv~~~n~~ai~~Y~~~gF~~~~~~~~~y~~~~~~~ 164 (187)
T KOG3138|consen 86 GNRVIYILSLGVLPRYRNKGIGSKLLEFVKKYCSEAH-QCRRVYLHVQAVNESAIEFYEKRGFEIVERLKNYYSILGPPD 164 (187)
T ss_pred ccceeEEEeecccHHHHhcchHHHHHHHHHHHHhccc-ccceEEEEEEeCCCcHHHHHHhcCceEeeccccccccccCcc
Confidence 0 123457789999999999999999999994442 388999999999999999999999999999887776655544
Q ss_pred EeEEEE
Q 030910 159 DIVVFS 164 (169)
Q Consensus 159 d~~~~~ 164 (169)
+.+.+.
T Consensus 165 ~~~l~~ 170 (187)
T KOG3138|consen 165 DSFLRK 170 (187)
T ss_pred hhhhhh
Confidence 444443
No 53
>KOG3234 consensus Acetyltransferase, (GNAT) family [General function prediction only]
Probab=99.45 E-value=1e-12 Score=80.34 Aligned_cols=134 Identities=16% Similarity=0.138 Sum_probs=96.4
Q ss_pred EEeeCCCCChhhHHhhcCCccccccccCCCcCChHHHHHHHHHhhccCCeEEEEEE-CCeEEEEEEEEeCCCCCCcEEEE
Q 030910 8 TLRPFKISDVDDFMGWAGDENVTKYCRWNTFTFRDDAVAFLKEVIKSHPWYRAICV-KDRPIGSIYVMPGIGKDERRGEI 86 (169)
Q Consensus 8 ~ir~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vG~~~~~~~~~~~~~~~~i 86 (169)
.+||.+++|+-.+..+--|+....+. ..-...++..+- ..+.++.. ++++.|++.-.-......-.+.+
T Consensus 3 t~r~f~~~Dlf~fNninLDpltEt~~-------~~Fyl~yl~~~p---e~~~~a~~p~~~imgyimgk~Eg~~~~wh~Hv 72 (173)
T KOG3234|consen 3 TIRPFTPQDLFKFNNINLDPLTETFP-------ISFYLIYLAIWP---EDFIVAEAPTGEIMGYIMGKVEGKDTEWHGHV 72 (173)
T ss_pred ccccccHHHHHhhccccccccccccc-------eehhHHHHHhCh---HHhEeccCCCCceEEEEeeeccccCcceeeEE
Confidence 57899999988888777776544431 222233333331 12223333 78899999885544332222445
Q ss_pred E-EEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeEEeeeeec
Q 030910 87 G-YAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGLLRKYFFV 153 (169)
Q Consensus 87 ~-~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~~~~~~~~ 153 (169)
. +.|+|+||+.|+|+.+|..+.+-. +.. +.--+.+.|..+|.-|+.+|+++||..-.+..+++..
T Consensus 73 TAltVap~~Rrl~la~~lm~~led~~-d~~-~a~fvDLfVr~sN~iAI~mYkkLGY~~YR~Vi~YY~~ 138 (173)
T KOG3234|consen 73 TALTVAPDYRRLGLAAKLMDTLEDVS-DVD-NAYFVDLFVRVSNQIAIDMYKKLGYSVYRTVIEYYSV 138 (173)
T ss_pred EEEEechhHHHHHHHHHHHHHHHHHH-Hhh-hhheeeeeeeccchhHHHHHHhcCceEEEeeeeeecc
Confidence 3 779999999999999999999988 443 6778999999999999999999999999988887753
No 54
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=99.41 E-value=5e-12 Score=87.59 Aligned_cols=78 Identities=18% Similarity=0.134 Sum_probs=62.7
Q ss_pred EEEE-ECCeEEEEEEEEeCCCCCCcEEEEEEEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHH
Q 030910 59 RAIC-VKDRPIGSIYVMPGIGKDERRGEIGYAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVME 137 (169)
Q Consensus 59 ~~~~-~~~~~vG~~~~~~~~~~~~~~~~i~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~ 137 (169)
+.+. +++++||++.+... ..-.++|+|+|||+|+|++|++.+++++.+. |+..+.+.+...| ..||+
T Consensus 8 ~~v~~~~~~iVG~~~l~~~-------~I~~vaV~p~~Rg~GiG~~Ll~~l~~~a~~~--g~~~i~L~t~~~~---~~fYe 75 (297)
T cd02169 8 VGIFDDAGELIATGSIAGN-------VLKCVAVCPKYQGEGLALKIVSELINKAYEE--GIFHLFLFTKPKN---AKFFR 75 (297)
T ss_pred EEEEEECCEEEEEEEeccC-------EEEEEEECHHHcCCCHHHHHHHHHHHHHHHC--CCCEEEEEEcccH---HHHHH
Confidence 4444 47999999988531 2235889999999999999999999999555 9999999887654 58999
Q ss_pred HcCCeEEeEEe
Q 030910 138 KAGFIREGLLR 148 (169)
Q Consensus 138 ~~Gf~~~~~~~ 148 (169)
|+||+..+...
T Consensus 76 k~GF~~~~~~~ 86 (297)
T cd02169 76 GLGFKELANAS 86 (297)
T ss_pred HCCCEEecccC
Confidence 99999988433
No 55
>PRK13688 hypothetical protein; Provisional
Probab=99.40 E-value=2.2e-11 Score=77.03 Aligned_cols=82 Identities=20% Similarity=0.174 Sum_probs=57.5
Q ss_pred CeEEEEEECCeEEEEEEEEeCCC-------CCCcEEEEE-EEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeec
Q 030910 56 PWYRAICVKDRPIGSIYVMPGIG-------KDERRGEIG-YAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFS 127 (169)
Q Consensus 56 ~~~~~~~~~~~~vG~~~~~~~~~-------~~~~~~~i~-~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~ 127 (169)
...+++..++++||++.+...+. .....++|. ++|+|++||+|+|++|++.+. +. ++. + .+..
T Consensus 45 ~~~~~~~~~~~~VG~~~l~~~dg~~~~~~~~~~~~~~L~~l~V~p~~rgkGiG~~Ll~~a~----~~--~~~-~--~~~~ 115 (156)
T PRK13688 45 SPFYGIYYGDSLVARMSLYKKGGVEEPYFEDTQDYLELWKLEVLPKYQNRGYGEMLVDFAK----SF--QLP-I--KTIA 115 (156)
T ss_pred CCEEEEEECCEEEEEEEEEecCCcccccccCCCCeEEEEEEEECHHHcCCCHHHHHHHHHH----Hh--CCe-E--EEEe
Confidence 45566667999999988754331 111225564 889999999999999887533 22 443 3 3445
Q ss_pred cCHHHHHHHHHcCCeEEeEE
Q 030910 128 ENKASQRVMEKAGFIREGLL 147 (169)
Q Consensus 128 ~N~~a~~~y~~~Gf~~~~~~ 147 (169)
.| .|.+||+|+||+..+..
T Consensus 116 ~~-~a~~FY~k~GF~~~~~~ 134 (156)
T PRK13688 116 RN-KSKDFWLKLGFTPVEYK 134 (156)
T ss_pred cc-chHHHHHhCCCEEeEEe
Confidence 55 47899999999999886
No 56
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=99.38 E-value=1.8e-11 Score=77.58 Aligned_cols=128 Identities=13% Similarity=0.114 Sum_probs=89.2
Q ss_pred ceEEEeeCCCCChhhHHhhcCCccccccccCCCcCChHHHHHHHHHhhc-cCCeEEEEEECCeEEEEEEEEeCCCCCCc-
Q 030910 5 IEITLRPFKISDVDDFMGWAGDENVTKYCRWNTFTFRDDAVAFLKEVIK-SHPWYRAICVKDRPIGSIYVMPGIGKDER- 82 (169)
Q Consensus 5 ~~i~ir~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~vG~~~~~~~~~~~~~- 82 (169)
..+.||+.++.|.+.+.++.... + .+ .......+.+++... .....++..++|++||.+.+++..-....
T Consensus 2 ~~~~ir~e~~~d~~~i~~~~~~a----F---~~-~~e~~~v~~lR~~~~~~~~LslVA~d~g~vvG~Il~s~v~~~g~~~ 73 (171)
T COG3153 2 MMMLIRTETPADIPAIEALTREA----F---GP-GREAKLVDKLREGGRPDLTLSLVAEDDGEVVGHILFSPVTVGGEEL 73 (171)
T ss_pred CccEEEecChhhHHHHHHHHHHH----h---hc-chHHHHHHHHHhcCCcccceeEEEeeCCEEEEEEEEeEEEecCccc
Confidence 35789999999999999985432 2 11 122233333333321 22355566669999999999997754221
Q ss_pred -EEEEE-EEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeEEe
Q 030910 83 -RGEIG-YAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGLLR 148 (169)
Q Consensus 83 -~~~i~-~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~~~ 148 (169)
..-++ +.|+|++||+|||++|++..++.+... |...+.+-=++ .+|.++||+..+...
T Consensus 74 ~~~~LaPLaV~p~~qg~GIG~~Lvr~~le~a~~~--G~~~v~vlGdp------~YY~rfGF~~~~~~~ 133 (171)
T COG3153 74 GWLGLAPLAVDPEYQGQGIGSALVREGLEALRLA--GASAVVVLGDP------TYYSRFGFEPAAGAK 133 (171)
T ss_pred ceEEEEeEEEchhhcCCcHHHHHHHHHHHHHHHC--CCCEEEEecCc------ccccccCcEEccccc
Confidence 12233 679999999999999999999999554 88888764443 389999999987654
No 57
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=99.37 E-value=6e-12 Score=79.49 Aligned_cols=83 Identities=16% Similarity=0.149 Sum_probs=67.5
Q ss_pred CeEEEEEEEEeCCCCCCcE-EEEEEEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeE
Q 030910 65 DRPIGSIYVMPGIGKDERR-GEIGYAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIR 143 (169)
Q Consensus 65 ~~~vG~~~~~~~~~~~~~~-~~i~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~ 143 (169)
+.+|||..+...-+..... ....+-|.++|||+|||+.|++.+...+-. . ..++|.++|...|.+|+.||+++||..
T Consensus 102 ~~~vgf~~Frf~vd~g~~vlYcyEvqv~~~yR~kGiGk~LL~~l~~~a~~-~-~~~kVmLTVf~~N~~al~Fy~~~gf~~ 179 (202)
T KOG2488|consen 102 SKLVGFTMFRFTVDTGDPVLYCYEVQVASAYRGKGIGKFLLDTLEKLADS-R-HMRKVMLTVFSENIRALGFYHRLGFVV 179 (202)
T ss_pred CceeeEEEEEEEcccCCeEEEEEEEeehhhhhccChHHHHHHHHHHHHHH-H-HhhhheeeeecccchhHHHHHHcCccc
Confidence 4899999999876543211 222355899999999999999999999844 4 889999999999999999999999988
Q ss_pred EeEEee
Q 030910 144 EGLLRK 149 (169)
Q Consensus 144 ~~~~~~ 149 (169)
....+.
T Consensus 180 ~~~sp~ 185 (202)
T KOG2488|consen 180 DEESPC 185 (202)
T ss_pred CCCCCc
Confidence 766544
No 58
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=99.36 E-value=3e-11 Score=85.04 Aligned_cols=98 Identities=15% Similarity=0.055 Sum_probs=75.2
Q ss_pred ChHHHHHHHHHhh-c---cCCeEEEEEECCeEEEEEEEEeCCCCCCcEEEEEEEeCCCccCcChHHHHHHHHHHHHHHhc
Q 030910 40 FRDDAVAFLKEVI-K---SHPWYRAICVKDRPIGSIYVMPGIGKDERRGEIGYAISAKYWGKGVATEAVKIAVACAFKEL 115 (169)
Q Consensus 40 ~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~i~~~v~~~~rg~G~g~~l~~~~~~~~~~~~ 115 (169)
....+.+++.+.. . +....+++..+|++||++.+... ..-.++|+|++||+|+|++|+..+++++++.
T Consensus 11 ~~~~v~~fL~~~~l~~d~~~d~~vv~~~~~~lVg~g~l~g~-------~ik~vaV~~~~rG~Glg~~L~~~L~~~a~~~- 82 (332)
T TIGR00124 11 KACGIKNFLHQNELSLDAPLEIFIAVYEDEEIIGCGGIAGN-------VIKCVAIDESLRGEGLALQLMTELENLAYEL- 82 (332)
T ss_pred HHHHHHHHHHhcCCcccCCCCEEEEEEECCEEEEEEEEecC-------EEEEEEEcHHHcCCCHHHHHHHHHHHHHHHc-
Confidence 3456677777652 2 12355556669999999998421 2225889999999999999999999999655
Q ss_pred CCceeEEEEeeccCHHHHHHHHHcCCeEEeEEee
Q 030910 116 KYLDRIEGLVFSENKASQRVMEKAGFIREGLLRK 149 (169)
Q Consensus 116 ~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~~~~ 149 (169)
|...+.+.+.+.| .+||+++||...+..++
T Consensus 83 -G~~~l~l~Tk~~~---~~fy~klGF~~i~~~~~ 112 (332)
T TIGR00124 83 -GRFHLFIFTKPEY---AALFEYCGFKTLAEAKD 112 (332)
T ss_pred -CCCEEEEEECchH---HHHHHHcCCEEeeeecc
Confidence 9999999887666 46999999999988764
No 59
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=99.24 E-value=5.3e-10 Score=76.05 Aligned_cols=89 Identities=20% Similarity=0.087 Sum_probs=65.8
Q ss_pred CeEEEEEECCeEEEEEEEEeCCCCCCcEEEEEEEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHH
Q 030910 56 PWYRAICVKDRPIGSIYVMPGIGKDERRGEIGYAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRV 135 (169)
Q Consensus 56 ~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~i~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~ 135 (169)
+..+++..+|++|+.+.-....... .+|++..+|+|||+|+|+.+...++..++++ ++.-. ..+ .|.+|+++
T Consensus 165 G~Gf~i~~~~~iVs~~~s~~~~~~~---~EI~I~T~~~yR~kGLA~~~aa~~I~~Cl~~--~l~P~-WDc--~N~~S~~l 236 (265)
T PF12746_consen 165 GFGFCILHDGEIVSGCSSYFVYENG---IEIDIETHPEYRGKGLATAVAAAFILECLEN--GLYPS-WDC--HNLASIAL 236 (265)
T ss_dssp --EEEEEETTEEEEEEEEEEEETTE---EEEEEEE-CCCTTSSHHHHHHHHHHHHHHHT--T-EEE--EE--SSHHHHHH
T ss_pred CcEEEEEECCEEEEEEEEEEEECCE---EEEEEEECHHhhcCCHHHHHHHHHHHHHHHC--CCCcC-eeC--CCHHHHHH
Confidence 4677888899998776655554332 8999999999999999999999999999777 54432 223 69999999
Q ss_pred HHHcCCeEEeEEeeeee
Q 030910 136 MEKAGFIREGLLRKYFF 152 (169)
Q Consensus 136 y~~~Gf~~~~~~~~~~~ 152 (169)
.+|+||+......-+..
T Consensus 237 A~kLGf~~~~~Y~~Y~v 253 (265)
T PF12746_consen 237 AEKLGFHFDFEYTAYEV 253 (265)
T ss_dssp HHHCT--EEEEEEEE--
T ss_pred HHHcCCcccceeeeeee
Confidence 99999999998876543
No 60
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=99.17 E-value=1.2e-10 Score=65.31 Aligned_cols=71 Identities=25% Similarity=0.320 Sum_probs=61.4
Q ss_pred CCeEEEEEEEEeCCCCCCcEEEEE-EEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCe
Q 030910 64 KDRPIGSIYVMPGIGKDERRGEIG-YAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFI 142 (169)
Q Consensus 64 ~~~~vG~~~~~~~~~~~~~~~~i~-~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~ 142 (169)
+|++|.++..... ++++ -+..|+|||+|+.+.++....+++.+ . |+. ++.+|+++|..++++.+++||.
T Consensus 7 eG~PVSW~lmdqt-------ge~rmgyTlPeyR~~G~~~~v~~~~~~~L~~-~-g~P-~Y~hv~~~N~~~~r~~~~lg~~ 76 (89)
T PF08444_consen 7 EGNPVSWSLMDQT-------GEMRMGYTLPEYRGQGLMSQVMYHLAQYLHK-L-GFP-FYGHVDEDNEASQRLSKSLGFI 76 (89)
T ss_pred CCCEeEEEEeccc-------ccccccccCHhHhcCCHHHHHHHHHHHHHHH-C-CCC-eEeehHhccHHHHHHHHHCCCe
Confidence 7899999887654 5665 34789999999999999999999944 4 887 9999999999999999999998
Q ss_pred EE
Q 030910 143 RE 144 (169)
Q Consensus 143 ~~ 144 (169)
..
T Consensus 77 ~~ 78 (89)
T PF08444_consen 77 FM 78 (89)
T ss_pred ec
Confidence 64
No 61
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=99.15 E-value=8.4e-10 Score=66.98 Aligned_cols=86 Identities=17% Similarity=0.109 Sum_probs=69.9
Q ss_pred CeEEEEEE-CCeEEEEEEEEeCCCCCCcEEEEE-EEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHH
Q 030910 56 PWYRAICV-KDRPIGSIYVMPGIGKDERRGEIG-YAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQ 133 (169)
Q Consensus 56 ~~~~~~~~-~~~~vG~~~~~~~~~~~~~~~~i~-~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~ 133 (169)
........ +|++++++-+-+....... ..|| ..|+|++||+|+|.+||..+++.+...+ .-+.+++..- ...+
T Consensus 49 ~~Hl~~~~~~g~LvAyaRLl~~~~~~~~-~~iGRV~v~~~~RG~glG~~Lm~~AL~~~~~~~-p~~~v~l~AQ---ahLq 123 (155)
T COG2153 49 TRHLLGWTPDGELVAYARLLPPGAEYEE-VSIGRVIVSPAARGQGLGQQLMEKALETAGREW-PDKPVYLGAQ---AHLQ 123 (155)
T ss_pred cceEEEEcCCCeEEEEEecCCCCCCcCc-eeeeeEEECHhhhccchhHHHHHHHHHHHHhhC-CCCCeEEehH---HHHH
Confidence 45566666 9999999999887765443 6676 7789999999999999999999998887 5566766543 4589
Q ss_pred HHHHHcCCeEEeE
Q 030910 134 RVMEKAGFIREGL 146 (169)
Q Consensus 134 ~~y~~~Gf~~~~~ 146 (169)
.||.+.||...+.
T Consensus 124 ~fYa~~GFv~~~e 136 (155)
T COG2153 124 DFYASFGFVRVGE 136 (155)
T ss_pred HHHHHhCcEEcCc
Confidence 9999999998876
No 62
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=99.13 E-value=1.1e-09 Score=81.34 Aligned_cols=86 Identities=14% Similarity=0.073 Sum_probs=64.7
Q ss_pred eEEEEEE---CCeEEEEEEEEeCCCCCC-----cEE---EEEEE---------eCCCccCcChHHHHHHHHHHHHHHhcC
Q 030910 57 WYRAICV---KDRPIGSIYVMPGIGKDE-----RRG---EIGYA---------ISAKYWGKGVATEAVKIAVACAFKELK 116 (169)
Q Consensus 57 ~~~~~~~---~~~~vG~~~~~~~~~~~~-----~~~---~i~~~---------v~~~~rg~G~g~~l~~~~~~~~~~~~~ 116 (169)
..|.-+. ++.++|++.+........ ..+ ++..+ .+++|||+|+|++|++.++++|.+.
T Consensus 412 e~F~~y~~~~~~~l~G~lrlr~~~~~~~~~~~~~~a~IrelhV~G~~~~~~~~~~~~~rg~GiG~~Ll~~ae~~Ar~~-- 489 (522)
T TIGR01211 412 EFFLSYEDPKNDILIGFLRLRFPSEPAHRKEVDATALVRELHVYGSEVPIGERGDDEWQHRGYGRRLLEEAERIAAEE-- 489 (522)
T ss_pred eEEEEEEcCCCCeEEEEEEEecCcccccccccCCCceEEEEEEeeeeccccccCChhHhCcCHHHHHHHHHHHHHHHC--
Confidence 3444444 579999999998764211 112 33333 4589999999999999999999665
Q ss_pred CceeEEEEeeccCHHHHHHHHHcCCeEEeEE
Q 030910 117 YLDRIEGLVFSENKASQRVMEKAGFIREGLL 147 (169)
Q Consensus 117 ~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~~ 147 (169)
|+..|.+. +|..|++||+++||+..+..
T Consensus 490 G~~~i~v~---s~~~A~~FY~klGf~~~g~y 517 (522)
T TIGR01211 490 GSEKILVI---SGIGVREYYRKLGYELDGPY 517 (522)
T ss_pred CCCEEEEe---eCchHHHHHHHCCCEEEcce
Confidence 99999863 47899999999999988764
No 63
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=99.08 E-value=2.1e-09 Score=67.16 Aligned_cols=79 Identities=11% Similarity=0.019 Sum_probs=65.7
Q ss_pred CCeEEEEEEEEeCCCCCCcEEEEEEEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeE
Q 030910 64 KDRPIGSIYVMPGIGKDERRGEIGYAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIR 143 (169)
Q Consensus 64 ~~~~vG~~~~~~~~~~~~~~~~i~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~ 143 (169)
..++||..-+.+....+.....-...|+.+.||+|+|+.+|+.++.|+... +++++++.+... .+||+++||+.
T Consensus 65 ~~~VigH~rLS~i~n~~~al~VEsVVV~k~~RG~GFGk~lMk~~E~~~R~~--gf~~~yLsT~DQ----~~FYe~lGYe~ 138 (225)
T KOG3397|consen 65 NDEVLGHSRLSHLPNRDHALWVESVVVKKDQRGLGFGKFLMKSTEKWMREK--GFNEAYLSTDDQ----CRFYESLGYEK 138 (225)
T ss_pred ccceeeeeccccCCCCCceeEEEEEEEehhhccccHHHHHHHHHHHHHHHh--hhhheeeecccc----hhhhhhhcccc
Confidence 678999999999887665423225788999999999999999999999555 999999988765 57999999998
Q ss_pred EeEEe
Q 030910 144 EGLLR 148 (169)
Q Consensus 144 ~~~~~ 148 (169)
..-..
T Consensus 139 c~Pi~ 143 (225)
T KOG3397|consen 139 CDPIV 143 (225)
T ss_pred cCcee
Confidence 76543
No 64
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=99.05 E-value=4e-09 Score=56.12 Aligned_cols=61 Identities=20% Similarity=0.210 Sum_probs=50.3
Q ss_pred EEEECCeEEEEEEEEeCCCCCCcEEEEE-EEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEE
Q 030910 60 AICVKDRPIGSIYVMPGIGKDERRGEIG-YAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEG 123 (169)
Q Consensus 60 ~~~~~~~~vG~~~~~~~~~~~~~~~~i~-~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~ 123 (169)
.+..+++++|++.+...+..... +.+. +.++|++||+|+|++++..+++++++ . +++.+.+
T Consensus 3 ~~~~~~~~ig~~~~~~~~~~~~~-~~l~~~~v~~~~~~~g~~~~~~~~~~~~~~~-~-~~~~v~~ 64 (65)
T cd04301 3 VAEDDGEIVGFASLSPDGSGGDT-AYIGDLAVLPEYRGKGIGSALLEAAEEEARE-R-GAKRLRL 64 (65)
T ss_pred EEecCCEEEEEEEEEecCCCCcc-EEEEEEEECHHHcCcCHHHHHHHHHHHHHHH-c-CCcEEEe
Confidence 44458999999999998753333 7776 88999999999999999999999976 4 8888765
No 65
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=98.83 E-value=2.3e-07 Score=51.73 Aligned_cols=70 Identities=14% Similarity=0.101 Sum_probs=50.5
Q ss_pred EEEEECCeEEEEEEEEeCCCCCCcEEEE-EEEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHH
Q 030910 59 RAICVKDRPIGSIYVMPGIGKDERRGEI-GYAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVME 137 (169)
Q Consensus 59 ~~~~~~~~~vG~~~~~~~~~~~~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~ 137 (169)
|.+..+|+.+|.+.+.... .. ..+ ...|.|++||+|+|+.|++.++++|.++ +.+ +.+.-+-+.++++
T Consensus 2 F~~~~~g~~~a~l~Y~~~~---~~-~~i~hT~V~~~~rGqGia~~L~~~~l~~a~~~--~~k-----v~p~C~y~~~~~~ 70 (78)
T PF14542_consen 2 FELKDDGEEIAELTYREDG---GV-IVITHTEVPPELRGQGIAKKLVEAALDYAREN--GLK-----VVPTCSYVAKYFR 70 (78)
T ss_dssp EEEESSTTEEEEEEEEESS---SE-EEEEEEEE-CSSSTTTHHHHHHHHHHHHHHHT--T-E-----EEETSHHHHHHHH
T ss_pred EEEEECCEEEEEEEEEeCC---CE-EEEEEEEECccccCCcHHHHHHHHHHHHHHHC--CCE-----EEEECHHHHHHHH
Confidence 3455578899999997722 22 334 4779999999999999999999999665 644 4566667777776
Q ss_pred Hc
Q 030910 138 KA 139 (169)
Q Consensus 138 ~~ 139 (169)
++
T Consensus 71 ~h 72 (78)
T PF14542_consen 71 RH 72 (78)
T ss_dssp H-
T ss_pred hC
Confidence 64
No 66
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=98.82 E-value=9.3e-08 Score=57.30 Aligned_cols=88 Identities=13% Similarity=0.099 Sum_probs=58.1
Q ss_pred HHhhccCCeEEEEEECCeEEEEEEEEeCCCCCCcEEEEE-EEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeec
Q 030910 49 KEVIKSHPWYRAICVKDRPIGSIYVMPGIGKDERRGEIG-YAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFS 127 (169)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~i~-~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~ 127 (169)
..........|++..|++++|-+.+...... +.+. +.|.+--|++|+|..|++.+.+.+ |.++...+....
T Consensus 31 ~~~l~~~~~l~aArFNdRlLgAv~v~~~~~~----~~L~~l~VRevTRrRGVG~yLlee~~rq~----p~i~~w~l~~~~ 102 (128)
T PF12568_consen 31 EQWLDEGHRLFAARFNDRLLGAVKVTISGQQ----AELSDLCVREVTRRRGVGLYLLEEVLRQL----PDIKHWWLADEG 102 (128)
T ss_dssp -----SSEEEEEEEETTEEEEEEEEEEETTE----EEEEEEEE-TT-SSSSHHHHHHHHHHHHS-----S--EEEE--TT
T ss_pred HHHhccCCeEEEEEechheeeeEEEEEcCcc----eEEeeEEEeeccccccHHHHHHHHHHHHC----CCCcEEEEecCC
Confidence 3344455677777779999999999986542 7775 889999999999999999988765 367777765543
Q ss_pred ---cC-HHHHHHHHHcCCeEE
Q 030910 128 ---EN-KASQRVMEKAGFIRE 144 (169)
Q Consensus 128 ---~N-~~a~~~y~~~Gf~~~ 144 (169)
.+ .....|...+||...
T Consensus 103 ~~~~~~~~~~~Fm~a~GF~~~ 123 (128)
T PF12568_consen 103 VEPQDRAVMAAFMQACGFSAQ 123 (128)
T ss_dssp -S--THHHHHHHHHHHT-EE-
T ss_pred CcccchHHHHHHHHHcCcccc
Confidence 23 455689999999543
No 67
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=98.81 E-value=6e-07 Score=58.47 Aligned_cols=119 Identities=13% Similarity=0.061 Sum_probs=70.1
Q ss_pred ChHHHHHHHHHhhccCCeEEEEEECC--eEEEEEEEEeCCCCC----------------------------------CcE
Q 030910 40 FRDDAVAFLKEVIKSHPWYRAICVKD--RPIGSIYVMPGIGKD----------------------------------ERR 83 (169)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~vG~~~~~~~~~~~----------------------------------~~~ 83 (169)
++++...+... +....|++..++ +++|.+.+.....-. -..
T Consensus 14 sPnDL~~LlDa---P~h~l~~l~~~~~p~il~~~~v~~EG~l~~~l~~~i~~g~rRp~G~LiP~~L~~~~~~~~f~~l~g 90 (196)
T PF13718_consen 14 SPNDLQLLLDA---PNHRLFVLLQPGDPDILGVAQVALEGGLSKELIEAILSGGRRPKGHLIPQTLAQHFGDPEFAQLSG 90 (196)
T ss_dssp -HHHHHHHHH----TTEEEEEEE-SS--SEEEEEEEEEEE---HHHHHHHHTTS---SS-HHHHHHHHHSS-TTGGGSEE
T ss_pred CHHHHHHHhcC---CcceeehhccCCCceEEEEEEEEecCCCCHHHHHHHHhCCCCCCCCCHHHHHHHHhCCHHHHhhcc
Confidence 45555554443 345666666677 999999887654310 001
Q ss_pred EE-EEEEeCCCccCcChHHHHHHHHHHHHH-------------------------HhcCCceeEEEEeeccCHHHHHHHH
Q 030910 84 GE-IGYAISAKYWGKGVATEAVKIAVACAF-------------------------KELKYLDRIEGLVFSENKASQRVME 137 (169)
Q Consensus 84 ~~-i~~~v~~~~rg~G~g~~l~~~~~~~~~-------------------------~~~~~~~~v~~~~~~~N~~a~~~y~ 137 (169)
+. +.+.|+|++|++|+|+++++.+++++. .. +++.+-+.- --+..-.+||.
T Consensus 91 ~RIvRIAvhP~~q~~G~Gs~lL~~l~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~--~vDylGtSF-G~t~~Ll~FW~ 167 (196)
T PF13718_consen 91 ARIVRIAVHPDLQRMGYGSRLLQQLEQYAEGKIPSLSEQDKEKLPPLLSKLSDRRPP--GVDYLGTSF-GATPELLKFWQ 167 (196)
T ss_dssp EEEEEEEE-CCC-SSSHHHHHHHHHHHT-------------------------------S-SEEEEEE-E--HHHHHHHH
T ss_pred eeEEEEEEChhhhcCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccc--CCCEEEecc-CCCHHHHHHHH
Confidence 22 358899999999999999999999983 23 666665533 34578899999
Q ss_pred HcCCeEEeEEeeeeecCCEEeEeEEEE
Q 030910 138 KAGFIREGLLRKYFFVKGKSVDIVVFS 164 (169)
Q Consensus 138 ~~Gf~~~~~~~~~~~~~g~~~d~~~~~ 164 (169)
|+||..+..-...-...|+..-+++..
T Consensus 168 k~gf~pv~l~~~~n~~SGe~S~imlr~ 194 (196)
T PF13718_consen 168 KNGFVPVYLGQTRNEASGEHSAIMLRP 194 (196)
T ss_dssp CTT-EEEEE-SS--TTT---EEEEEEE
T ss_pred HCCcEEEEEecCcccccCceeeeEEee
Confidence 999999877655555678776666554
No 68
>COG5628 Predicted acetyltransferase [General function prediction only]
Probab=98.54 E-value=1.5e-06 Score=51.13 Aligned_cols=82 Identities=15% Similarity=0.106 Sum_probs=60.6
Q ss_pred CCeEEEEEECCeEEEEEEEEeCCCCCCc-EEEEE-EEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHH
Q 030910 55 HPWYRAICVKDRPIGSIYVMPGIGKDER-RGEIG-YAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKAS 132 (169)
Q Consensus 55 ~~~~~~~~~~~~~vG~~~~~~~~~~~~~-~~~i~-~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a 132 (169)
....|.+..+|.+||++.+-........ ...++ ++|...|||+|+|+++.+++..... + .-.+.+.+.|.+|
T Consensus 36 ~~~~~~~~~~~~~igf~l~L~~~~~~~~iD~~~~efFIi~k~~~~GvGR~aaK~If~~~~----g--~w~Va~i~EN~PA 109 (143)
T COG5628 36 VREAWLFRIGGLPVGFALVLDLAHSPTPIDRAVAEFFIVRKHRRRGVGRAAAKAIFGSAW----G--VWQVATVRENTPA 109 (143)
T ss_pred ccceeEEEECCceeeeeeeecccCCCCcccccchheEeeehhhccchhHHHHHHHHHHhh----c--eEEEEEeccCChh
Confidence 3456777789999999988776543321 13333 7888999999999999998876542 2 2345578899999
Q ss_pred HHHHHHcCCe
Q 030910 133 QRVMEKAGFI 142 (169)
Q Consensus 133 ~~~y~~~Gf~ 142 (169)
+.++++.-..
T Consensus 110 ~~fwK~~~~t 119 (143)
T COG5628 110 RAFWKRVAET 119 (143)
T ss_pred HHHHHhhhcc
Confidence 9999998664
No 69
>COG3818 Predicted acetyltransferase, GNAT superfamily [General function prediction only]
Probab=98.51 E-value=1.3e-06 Score=52.26 Aligned_cols=129 Identities=13% Similarity=0.090 Sum_probs=83.4
Q ss_pred eEEEeeCCCCChhhHHhhcCCccccccccCCCcCChHHHHHHHHHhhccCCeEEEEEECCeEEEEEEEEeCCCC---CC-
Q 030910 6 EITLRPFKISDVDDFMGWAGDENVTKYCRWNTFTFRDDAVAFLKEVIKSHPWYRAICVKDRPIGSIYVMPGIGK---DE- 81 (169)
Q Consensus 6 ~i~ir~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~---~~- 81 (169)
.+.++.+...|..++..+-+..... -.+...+....++.+. |++..+|.+-|++.-...+.. ++
T Consensus 7 p~~~~D~~apd~aavLaLNNeha~e-----lswLe~erL~~l~~eA-------F~ArR~G~l~afl~tFd~~a~ydSpNF 74 (167)
T COG3818 7 PILIRDVRAPDLAAVLALNNEHALE-----LSWLELERLYRLYKEA-------FVARRDGNLAAFLVTFDSSARYDSPNF 74 (167)
T ss_pred ceehhhhcCCchhhHHhccchhhhh-----ccccCHHHHHHHHHHH-------HHHhhccchhhheeeccccccCCCCce
Confidence 4667777778888888875543221 1223444444444432 333335555555444333211 00
Q ss_pred --------cEEEE-EEEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEe--eccCHHHHHHHHHcCCeEEeEEe
Q 030910 82 --------RRGEI-GYAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLV--FSENKASQRVMEKAGFIREGLLR 148 (169)
Q Consensus 82 --------~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~--~~~N~~a~~~y~~~Gf~~~~~~~ 148 (169)
.-..+ .+.|....||+|+|+++..-+..++... |...+++.| ++.|++|-.|...+||..+|...
T Consensus 75 lWFrErYe~F~YvDRvVVA~~aRGrG~aRalY~Dlf~~Ae~a--gy~~~tCEVn~DppnpasdaFHaalGF~eVG~a~ 150 (167)
T COG3818 75 LWFRERYENFFYVDRVVVASRARGRGVARALYADLFSYAELA--GYPYLTCEVNLDPPNPASDAFHAALGFHEVGQAT 150 (167)
T ss_pred eehhhhCCceEEEEEEEEEecccccchHHHHHHHHHHHHHhc--CCceEEEEecCCCCChHHHHHhhhcCceEccceE
Confidence 00222 2557889999999999999999999444 888887666 56799999999999999999854
No 70
>KOG4144 consensus Arylalkylamine N-acetyltransferase [General function prediction only]
Probab=98.50 E-value=2.3e-07 Score=57.10 Aligned_cols=130 Identities=13% Similarity=0.017 Sum_probs=81.2
Q ss_pred ceEEEeeCCCCChhhHHhhcCCccccccccCCCcCChHHHHHHHHHhhcc-CCe---------EEEEEECCeEEEEEEEE
Q 030910 5 IEITLRPFKISDVDDFMGWAGDENVTKYCRWNTFTFRDDAVAFLKEVIKS-HPW---------YRAICVKDRPIGSIYVM 74 (169)
Q Consensus 5 ~~i~ir~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---------~~~~~~~~~~vG~~~~~ 74 (169)
..+.|||..++|.+.+..+-. ..| +.+.-...+.++..... ... .+.-..++.+||++...
T Consensus 10 ~~~~irp~i~e~~q~~~~Lea----~~F-----Pe~erasfeii~~r~i~~pevc~glf~~~~h~~~~~~~tLIghIigs 80 (190)
T KOG4144|consen 10 EAPRIRPGIPESCQRRHTLEA----SEF-----PEDERASFEIIRERFISVPEVCPGLFDEIRHFLTLCEGTLIGHIIGS 80 (190)
T ss_pred ccccCCCCChHHHHHHhcccc----ccC-----ChhHHHHHHHHHHHHhcchhhcchhhhhHHhhhhhccccceehhhcc
Confidence 357899999999887777632 222 11222222333322221 111 11112278999999888
Q ss_pred eCCCC------------CCcEEEE-EEEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCC
Q 030910 75 PGIGK------------DERRGEI-GYAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGF 141 (169)
Q Consensus 75 ~~~~~------------~~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf 141 (169)
..+.. ..+...+ .+.|+|+||.+|+|+.|+..-++..-++- -.+++.+-+. .+-+.||+++||
T Consensus 81 ~~~~E~lt~ESm~kh~s~g~ni~iHsl~Ihpa~rk~g~a~~Ll~~ylq~l~~q~-i~~r~~Li~h---~pLvPFYEr~gF 156 (190)
T KOG4144|consen 81 LWDKERLTQESMTKHRSGGHNIHIHSLAIHPAFRKQGRAPILLWRYLQHLGSQP-IVRRAALICH---DPLVPFYERFGF 156 (190)
T ss_pred cCcchhhhHHHHhhhhcCCcceeEEEEEecHHHHhcCcchhHHHHHHHHhhcCc-cccceeeeec---CCccchhHhcCc
Confidence 77643 1111333 36789999999999999998777774543 4455555443 467889999999
Q ss_pred eEEeEE
Q 030910 142 IREGLL 147 (169)
Q Consensus 142 ~~~~~~ 147 (169)
+.+|..
T Consensus 157 k~vgp~ 162 (190)
T KOG4144|consen 157 KAVGPC 162 (190)
T ss_pred eeeccc
Confidence 999873
No 71
>PF11039 DUF2824: Protein of unknown function (DUF2824); InterPro: IPR022568 This family of proteins has no known function. Members of the family are found in P22-like viruses and bacteria. Some of the phage members have been annotated as head assembly proteins, but this has not been confirmed.
Probab=98.43 E-value=8.4e-06 Score=48.78 Aligned_cols=106 Identities=13% Similarity=0.147 Sum_probs=87.3
Q ss_pred cCCeEEEEEECCeEEEEEEEEeCCCCCCcEEEEEEEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHH
Q 030910 54 SHPWYRAICVKDRPIGSIYVMPGIGKDERRGEIGYAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQ 133 (169)
Q Consensus 54 ~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~i~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~ 133 (169)
++..++.+...+.++|++.+....+.. .+..-.-+|++|| ++.+.-....+|+.+.. .+..+...+...-+..+
T Consensus 36 ~~~~Y~gVyeg~~l~Gi~~v~~i~~~~---vecHa~y~P~fRG--~a~~~~~~F~kwlL~Ns-~f~~vit~vp~kt~~Gr 109 (151)
T PF11039_consen 36 PDQLYLGVYEGGQLGGIVYVEEIQPSV---VECHAMYDPGFRG--YALEIGRLFCKWLLENS-PFQNVITFVPDKTRYGR 109 (151)
T ss_pred CccEEEEEEeceEEEEEEEEEEEeeee---EEEEeeeccccch--hHHHHHHHHHHHHhcCC-ceeEEEEecccccccch
Confidence 455777888899999999998876542 5555567999997 99999999999999988 88888888888888888
Q ss_pred HHHHHcCCeEEeEEeeeeecCCEEeEeEEEEeecc
Q 030910 134 RVMEKAGFIREGLLRKYFFVKGKSVDIVVFSTVEA 168 (169)
Q Consensus 134 ~~y~~~Gf~~~~~~~~~~~~~g~~~d~~~~~~~~~ 168 (169)
-.-+-+|.+.+|.+++++ .+.. |+-.|+++++
T Consensus 110 vic~llg~~RVG~id~~~-~g~~--~vTlYq~tRe 141 (151)
T PF11039_consen 110 VICRLLGARRVGHIDDYF-KGVD--GVTLYQLTRE 141 (151)
T ss_pred hHhhhhCCceeeeHHHHh-cCCC--ceEEEEccHH
Confidence 888999999999999876 3322 8899998875
No 72
>PF04958 AstA: Arginine N-succinyltransferase beta subunit; InterPro: IPR007041 Arginine N-succinyltransferase catalyses the transfer of succinyl-CoA to arginine to produce succinylarginine. This is the first step in arginine catabolism via the arginine succinyltransferase pathway. Six major L-arginine-degrading pathways have been described for prokaryotes []. Many bacteria arginine succinyltransferase 2.3.1.109 from EC, which is the AstA protein of the succinyltransferase (ast) pathway operon consists of five genes. In a few species, such as Pseudomonas aeruginosa, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST). This entry represents the family of proteins that make up the beta subunit of the heterodimer of Ast and AOST.; GO: 0008791 arginine N-succinyltransferase activity, 0006527 arginine catabolic process; PDB: 1YLE_A.
Probab=98.35 E-value=7.6e-06 Score=57.71 Aligned_cols=102 Identities=14% Similarity=0.202 Sum_probs=58.6
Q ss_pred EEEeeCCCCChhhHHhhcCCccccccccCCCcCChHHHHHHHHHhhc-----------cCCeEEEEEE--CCeEEEEEEE
Q 030910 7 ITLRPFKISDVDDFMGWAGDENVTKYCRWNTFTFRDDAVAFLKEVIK-----------SHPWYRAICV--KDRPIGSIYV 73 (169)
Q Consensus 7 i~ir~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~--~~~~vG~~~~ 73 (169)
+.|||++.+|+++|.++....... + ..-+.+.+...+.+++... +..+.|++++ +|+++|++.+
T Consensus 2 ~viRp~~~~Dl~aL~~LA~~sg~G-~--TsLP~d~~~L~~rI~~S~~sFa~~~~~~~~~~~YlfVLED~~tg~vvGts~I 78 (342)
T PF04958_consen 2 LVIRPARPSDLDALYALARESGPG-F--TSLPPDREALAERIERSERSFAGRDVDFPGDEGYLFVLEDTETGEVVGTSAI 78 (342)
T ss_dssp EEEEE--GGGHHHHHHHHHHS-TT----TTS-S-HHHHHHHHHHHHHHHH-TT----S--EEEEEEEETTT--EEEEEEE
T ss_pred eEEecCchhhHHHHHHHHHHcCCC-c--ccCCCCHHHHHHHHHHHHHHhhccccCCCCccceEEEEEecCCCcEEEEEeE
Confidence 689999999999999987543211 1 1223345555554443322 1225666665 6999999998
Q ss_pred EeCCCCC---------------------------------CcEEEEE-EEeCCCccCcChHHHHHHHHHHHH
Q 030910 74 MPGIGKD---------------------------------ERRGEIG-YAISAKYWGKGVATEAVKIAVACA 111 (169)
Q Consensus 74 ~~~~~~~---------------------------------~~~~~i~-~~v~~~~rg~G~g~~l~~~~~~~~ 111 (169)
...-... ....+++ ++++|+||+.|.|+.|-+.=.=+.
T Consensus 79 ~a~vG~~~PfY~yr~~~~vh~S~~L~v~~~~~~L~L~~d~tG~sEl~tLfL~p~~R~~~~G~lLSr~RfLFi 150 (342)
T PF04958_consen 79 EAAVGLDEPFYSYRVSTLVHASRELGVRNRHETLTLSNDYTGCSELCTLFLDPDYRGGGNGRLLSRSRFLFI 150 (342)
T ss_dssp ESSTTSSS---EEEEEEEEEEETTTTEEEEEEEEEEE-TTTTSEEEEEEEE-GGGTTSHHHHHHHHHHHHHH
T ss_pred EeccCCCCCcEEEEcCceeEcCcccCCccceeeEeeecCCCCCeeeEEEEECHHHcCCchHHHHHHHHHHHH
Confidence 7653321 1115553 789999999999998766544444
No 73
>PRK10456 arginine succinyltransferase; Provisional
Probab=98.29 E-value=1.9e-05 Score=55.59 Aligned_cols=138 Identities=15% Similarity=0.183 Sum_probs=88.9
Q ss_pred EEEeeCCCCChhhHHhhcCCccccccccCCCcCChHHHHHHHHHhhc---------cCCeEEEEEE--CCeEEEEEEEEe
Q 030910 7 ITLRPFKISDVDDFMGWAGDENVTKYCRWNTFTFRDDAVAFLKEVIK---------SHPWYRAICV--KDRPIGSIYVMP 75 (169)
Q Consensus 7 i~ir~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~--~~~~vG~~~~~~ 75 (169)
+.|||++.+|+++|.++....... + ..-+.+.+...+.+++... +..+.|++++ +|++||.+.+..
T Consensus 2 ~vvRpv~~~Dl~aL~~LA~~sG~G-~--TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLED~~tg~vvGts~I~a 78 (344)
T PRK10456 2 MVIRPVERSDLAALMQLAGKTGGG-L--TSLPANEATLAARIERALKTWQGELPKSEQGYVFVLEDSETGTVAGICAIEV 78 (344)
T ss_pred eEEecCccccHHHHHHHHHHcCCC-c--ccCCCCHHHHHHHHHHHHHHhcCcCCCCCccEEEEEEeCCCCcEEEEEeEEe
Confidence 689999999999999997654321 1 1223355555555554332 2235666665 699999998876
Q ss_pred CCCCC---------------------------------CcEEEE-EEEeCCCccCcChHHHHHHHHHHHHHHh-------
Q 030910 76 GIGKD---------------------------------ERRGEI-GYAISAKYWGKGVATEAVKIAVACAFKE------- 114 (169)
Q Consensus 76 ~~~~~---------------------------------~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~------- 114 (169)
.-... ....++ +++++|+||+.|.|+.|-+.=.=+....
T Consensus 79 ~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfl~p~~R~~~~G~LLSr~RfLFiA~~~erF~~~ 158 (344)
T PRK10456 79 AVGLNDPWYNYRVGTLVHASKELNVYNALPTLFLSNDHTGSSELCTLFLDPDWRKEGNGYLLSKSRFMFMAAFRDKFNDK 158 (344)
T ss_pred cccCCCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCceeEEEEECHHHcCCCchhHHHHHHHHHHHhhHhhhhhh
Confidence 43210 111455 3789999999999887655433332110
Q ss_pred ----c----------C---------------------------------------------CceeEEEEeeccCHHHHHH
Q 030910 115 ----L----------K---------------------------------------------YLDRIEGLVFSENKASQRV 135 (169)
Q Consensus 115 ----~----------~---------------------------------------------~~~~v~~~~~~~N~~a~~~ 135 (169)
+ | .++.+...|.++-.+|.++
T Consensus 159 viAEmRG~~De~G~SPFWd~lg~hFF~mdF~eAD~Lsg~~~k~FIaeLMP~~PIYv~LLp~eAq~vIG~vH~~t~pA~~l 238 (344)
T PRK10456 159 VVAEMRGVIDEHGYSPFWQSLGKRFFSMDFSRADYLCGTGQKAFIAELMPKHPIYTDFLSEEAQAVIGQVHPQTAPARAV 238 (344)
T ss_pred hheeccCccCCCCCCccHHHhhccccCCCHHHHHHHhcCCCceeHHHHCCCCCcccccCCHHHHHHhCCcCCCCHHHHHH
Confidence 0 0 3345666677788899999
Q ss_pred HHHcCCeEEeEE
Q 030910 136 MEKAGFIREGLL 147 (169)
Q Consensus 136 y~~~Gf~~~~~~ 147 (169)
.++-||+..+..
T Consensus 239 Le~EGF~~~~yV 250 (344)
T PRK10456 239 LEKEGFRYRNYI 250 (344)
T ss_pred HHHcCCccCCce
Confidence 999999987765
No 74
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=98.16 E-value=1.2e-05 Score=62.18 Aligned_cols=73 Identities=18% Similarity=0.177 Sum_probs=56.9
Q ss_pred EEEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeEEeeeeecCCEEeEeEEE
Q 030910 87 GYAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGLLRKYFFVKGKSVDIVVF 163 (169)
Q Consensus 87 ~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~~~~~~~~~g~~~d~~~~ 163 (169)
.+.|+|++|++|||+++++.+++++. . +++.+-. -.-.+..-.+||.|+||.++..-+..-...|++.-+++-
T Consensus 536 RIAvhPe~q~~GiGsrlL~~l~~~a~-~--~~Dwlgv-sFG~t~~L~rFW~rnGF~pVhls~~rn~~SGeys~i~lk 608 (758)
T COG1444 536 RIAVHPELQRMGIGSRLLALLIEEAR-K--GLDWLGV-SFGYTEELLRFWLRNGFVPVHLSPTRNASSGEYTAIVLK 608 (758)
T ss_pred EEEeCHHHHhcCHHHHHHHHHHHHHh-c--CCCEEee-ccCCCHHHHHHHHHcCeEEEEecCccCcCCCceeEEEEe
Confidence 47799999999999999999999984 3 6676655 334567889999999999998766554566776655543
No 75
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=98.15 E-value=2e-05 Score=45.68 Aligned_cols=60 Identities=17% Similarity=0.040 Sum_probs=47.0
Q ss_pred CCeEEEEEECCeEEEEEEEEeCCCCCCcEEEE-EEEeCCCccCcChHHHHHHHHHHHHHHhcCCce
Q 030910 55 HPWYRAICVKDRPIGSIYVMPGIGKDERRGEI-GYAISAKYWGKGVATEAVKIAVACAFKELKYLD 119 (169)
Q Consensus 55 ~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~ 119 (169)
....+.+..+|+.+|.+..+...+.. ..| .-.|.+++||||+|+.|+..+++.+.+. +.+
T Consensus 14 ~~~~y~~~~~G~~~~e~~y~~~~~~~---i~i~HT~V~d~lrGqGia~~L~~~al~~ar~~--g~k 74 (99)
T COG2388 14 ENGRYVLTDEGEVIGEATYYDRGENL---IIIDHTYVPDELRGQGIAQKLVEKALEEAREA--GLK 74 (99)
T ss_pred CceEEEEecCCcEEEEEEEecCCCCE---EEEecCcCCHHHcCCcHHHHHHHHHHHHHHHc--CCe
Confidence 34566666689999999999887543 333 3568999999999999999999999665 654
No 76
>TIGR03244 arg_catab_AstA arginine N-succinyltransferase. In many bacteria, the arginine succinyltransferase (ast) pathway operon consists of five genes, including this protein, arginine N-succinyltransferase (EC 2.3.1.109). In a few species, such as Pseudomonas aeruginosa, the member of this family is encoded adjacent to a paralog, and the two polypeptides form a heterodimeric enzyme, active on both arginine and ornithine. In such species, this polypeptide may be treated as the beta subunit of an enzyme that may be named either arginine N-succinyltransferase (AST) or arginine and orthithine N-succinyltransferase (AOST).
Probab=98.14 E-value=4.9e-05 Score=53.50 Aligned_cols=137 Identities=15% Similarity=0.192 Sum_probs=87.6
Q ss_pred EEeeCCCCChhhHHhhcCCccccccccCCCcCChHHHHHHHHHhhc---------cCCeEEEEEE--CCeEEEEEEEEeC
Q 030910 8 TLRPFKISDVDDFMGWAGDENVTKYCRWNTFTFRDDAVAFLKEVIK---------SHPWYRAICV--KDRPIGSIYVMPG 76 (169)
Q Consensus 8 ~ir~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~--~~~~vG~~~~~~~ 76 (169)
.|||++.+|++.|.++....... + ..-+.+.+...+.+++... +..+.|++++ .|+++|++.+...
T Consensus 1 vvRPv~~~Dl~aL~~LA~~sg~G-~--TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLEDt~tg~vvGts~I~a~ 77 (336)
T TIGR03244 1 IVRPVETSDLDALYQLAQSTGIG-L--TSLPANEDLLSARIERAEKTFSGELTRAEQGYLFVLEDTETGTVAGVSAIEAA 77 (336)
T ss_pred CcccCccccHHHHHHHHHHcCCC-c--ccCCCCHHHHHHHHHHHHHHhcCcCCCCCccEEEEEEeCCCCeEEEEEeEEec
Confidence 37999999999999997654321 1 1223355555555544332 1335666665 6999999988764
Q ss_pred CCCC---------------------------------CcEEEE-EEEeCCCccCcChHHHHHHHHHHHHHHh--------
Q 030910 77 IGKD---------------------------------ERRGEI-GYAISAKYWGKGVATEAVKIAVACAFKE-------- 114 (169)
Q Consensus 77 ~~~~---------------------------------~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~-------- 114 (169)
-... ....++ +++++|+||+.|.|+.|-+.=.=+....
T Consensus 78 vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~SElctLfL~p~~R~~~~G~LLSr~RfLFiA~~~erF~~~v 157 (336)
T TIGR03244 78 VGLEEPFYNYRVGTVVHASKELGIYKALETLFLSNDLTGYSELCTLFLDPDYRKGGNGRLLSKSRFLFIAQFRERFSKKI 157 (336)
T ss_pred ccCCCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCeeeEEEEECHHHcCCcchhhHHHHHHHHHHhhHhhhhhhh
Confidence 3210 111455 3789999999999886655433222110
Q ss_pred ---cC-------------------------------------------------------CceeEEEEeeccCHHHHHHH
Q 030910 115 ---LK-------------------------------------------------------YLDRIEGLVFSENKASQRVM 136 (169)
Q Consensus 115 ---~~-------------------------------------------------------~~~~v~~~~~~~N~~a~~~y 136 (169)
+. .++.+...|.++-.+|.++.
T Consensus 158 iAEmrG~~De~G~SPFWd~lg~hFF~mdF~eAD~Lsg~~~k~FIaeLMP~~PIYv~LLp~eAq~vIG~vH~~t~pA~~lL 237 (336)
T TIGR03244 158 IAEMRGVSDEQGRSPFWNALGRHFFSMDFSQADYLSGIGQKAFIAELMPKFPIYVDLLSAEAQDVIGRVHEDTRPALAML 237 (336)
T ss_pred hhhhcCccCCCCCCchHHHhhccccCCCHHHHHHHhccCcchhHHHHCCCCCcccccCCHHHHHHhCCcCCCCHHHHHHH
Confidence 00 33456667778888999999
Q ss_pred HHcCCeEEeEE
Q 030910 137 EKAGFIREGLL 147 (169)
Q Consensus 137 ~~~Gf~~~~~~ 147 (169)
++-||+..+..
T Consensus 238 e~EGF~~~~yV 248 (336)
T TIGR03244 238 ESEGFRYQGYV 248 (336)
T ss_pred HHcCCccCCce
Confidence 99999988765
No 77
>TIGR03245 arg_AOST_alph arginine/ornithine succinyltransferase, alpha subunit. In some bacteria, including Pseudomonas aeruginosa, the astB gene (arginine N-succinyltransferase) is replaced by tandem paralogs that form a heterodimer. This heterodimer from P. aeruginosa is characterized as arginine and ornithine N-2 succinyltransferase (AOST). Members of this protein family represent the less widespread paralog, designated AruI, or arginine/ornithine succinyltransferase, alpha subunit.
Probab=98.11 E-value=4.8e-05 Score=53.52 Aligned_cols=137 Identities=8% Similarity=0.119 Sum_probs=86.3
Q ss_pred EEeeCCCCChhhHHhhcCCccccccccCCCcCChHHHHHHHHHhhc----------cCCeEEEEEE--CCeEEEEEEEEe
Q 030910 8 TLRPFKISDVDDFMGWAGDENVTKYCRWNTFTFRDDAVAFLKEVIK----------SHPWYRAICV--KDRPIGSIYVMP 75 (169)
Q Consensus 8 ~ir~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~--~~~~vG~~~~~~ 75 (169)
.|||++.+|++.|.++.......- ..-+.+.+...+.+++... +..+.|++++ .|+++|.+.+..
T Consensus 1 viRpv~~~Dl~aL~~LA~~sG~G~---TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~~YlFVLEDt~tg~vvGts~I~a 77 (336)
T TIGR03245 1 IVRPSRFADLPAIERLANESAIGV---TSLPADRAKLGEKIAQSERSFAAEVSFVGEERYLFVLEDTETGKLLGTSSIVA 77 (336)
T ss_pred CcccCccccHHHHHHHHHHcCCCc---ccCCCCHHHHHHHHHHHHHHHHhhcCCCCCccEEEEEEeCCCCcEEEEEeEEe
Confidence 379999999999999976543211 1222344444444443222 2335666665 699999998876
Q ss_pred CCCCC---------------------------------CcEEEE-EEEeCCCccCcChHHHHHHHHHHHHHHh------c
Q 030910 76 GIGKD---------------------------------ERRGEI-GYAISAKYWGKGVATEAVKIAVACAFKE------L 115 (169)
Q Consensus 76 ~~~~~---------------------------------~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~------~ 115 (169)
.-... ....++ +++++|+||+.|.|+.|-+.=.-+.... .
T Consensus 78 ~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~~G~lLSr~RfLFiA~~~erF~~~ 157 (336)
T TIGR03245 78 SAGYGEPFYSYRNDTLIHASRELKVNNKIHVLYMCHELTGSSLLCSFYVDPRLRKTEAAELLSRARLLFMAAHRERFQSR 157 (336)
T ss_pred cccCCCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCCchhHHHHHHHHHHHhhHhhhhhh
Confidence 43210 111455 3789999999999887655433332110 0
Q ss_pred ---------------C---------------------------------------------CceeEEEEeeccCHHHHHH
Q 030910 116 ---------------K---------------------------------------------YLDRIEGLVFSENKASQRV 135 (169)
Q Consensus 116 ---------------~---------------------------------------------~~~~v~~~~~~~N~~a~~~ 135 (169)
| .++.+...|.++-.+|.++
T Consensus 158 viAEmrG~~De~G~SPFWd~lg~hFF~mdF~eAD~Lsg~~~k~FIaeLMP~~PIYv~LLp~eAq~vIG~vH~~t~pA~~l 237 (336)
T TIGR03245 158 IIVEIQGVQDDNGDSPFWDAIGRHFFDLDFATAEYYSGIKSKTFIAELMPPYPIYVPLLPDDAQDAIGQPHPHARDNCQI 237 (336)
T ss_pred heeeccCccCCCCCCccHHHhhccccCCCHHHHHHHhcCCCceeHHHHCCCCCcccccCCHHHHHHhCCcCCCCHHHHHH
Confidence 0 2345666677788899999
Q ss_pred HHHcCCeEEeEE
Q 030910 136 MEKAGFIREGLL 147 (169)
Q Consensus 136 y~~~Gf~~~~~~ 147 (169)
.++-||+..+..
T Consensus 238 Le~EGF~~~~yV 249 (336)
T TIGR03245 238 LNREGFEMDRYI 249 (336)
T ss_pred HHHcCCccCCcc
Confidence 999999987764
No 78
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=98.07 E-value=9.3e-05 Score=50.76 Aligned_cols=75 Identities=15% Similarity=0.103 Sum_probs=62.0
Q ss_pred CCeEEEEEEEEeCCCCCCcEEEEEEEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeE
Q 030910 64 KDRPIGSIYVMPGIGKDERRGEIGYAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIR 143 (169)
Q Consensus 64 ~~~~vG~~~~~~~~~~~~~~~~i~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~ 143 (169)
++++|++.++.-. ..-.+.|++..||-|++-+++.++++++++. |...+.+.+-+.| .++|+.+||..
T Consensus 45 ~~~iiacGsiaGn-------vikcvAvs~s~qGeGl~lkl~TeLin~ay~~--g~~hLFiyTKp~~---~~lFk~~GF~~ 112 (352)
T COG3053 45 NEEIIACGSIAGN-------VIKCVAVSESLQGEGLALKLVTELINLAYER--GRTHLFIYTKPEY---AALFKQCGFSE 112 (352)
T ss_pred CCcEEEecccccc-------eeEEEEechhcccccHHHHHHHHHHHHHHHc--CCceEEEEechhH---HHHHHhCCceE
Confidence 5999999877532 2224779999999999999999999999766 8999999888764 56999999999
Q ss_pred EeEEeee
Q 030910 144 EGLLRKY 150 (169)
Q Consensus 144 ~~~~~~~ 150 (169)
+...+.+
T Consensus 113 i~~~~~~ 119 (352)
T COG3053 113 IASAENV 119 (352)
T ss_pred eeccCce
Confidence 8877665
No 79
>PHA01733 hypothetical protein
Probab=98.07 E-value=4.6e-06 Score=51.59 Aligned_cols=130 Identities=12% Similarity=0.007 Sum_probs=76.4
Q ss_pred EEeeCCCCChhhHHhhcCCccccccccCCCcCChHHHHHHHHHhhccCC-eEEEEEECCeEEEEEEEEeCCCCCCcEEEE
Q 030910 8 TLRPFKISDVDDFMGWAGDENVTKYCRWNTFTFRDDAVAFLKEVIKSHP-WYRAICVKDRPIGSIYVMPGIGKDERRGEI 86 (169)
Q Consensus 8 ~ir~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~vG~~~~~~~~~~~~~~~~i 86 (169)
.|||++.+|+..+..-....+..+...... ++. .+........ ..+.+..+|.++|..+... +...+. + .
T Consensus 4 ~IrpaT~~d~~~l~~n~r~~Dr~E~ealg~--~p~----~l~~~~~~s~~~v~~~~~nG~l~aI~Gv~~-d~~~~v-G-~ 74 (153)
T PHA01733 4 NNRPATQADATEVAQNLRQEDREEIEGLGH--SPL----ALHLSLDVSENVVAFVAPDGSLAGVAGLVE-DMGNRV-G-E 74 (153)
T ss_pred ccccccHHHHHHHHccCCHHHHHHHHHhCC--Ccc----cchhhhhccccceEEEecCCcEEEEecccc-cccCCC-C-c
Confidence 588999999877777444444444432222 111 2222222223 3355555899999999987 322211 1 1
Q ss_pred EEEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeEEe
Q 030910 87 GYAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGLLR 148 (169)
Q Consensus 87 ~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~~~ 148 (169)
-|+|....-. .+-+...+.+-.++.+.. ..+.+...|+..|..++++.+.+||+.....+
T Consensus 75 pWlV~T~~v~-k~~~~f~re~r~~l~e~~-~Yp~LwNyV~~~N~~hir~Lk~lGF~f~~~~~ 134 (153)
T PHA01733 75 IWMVCTPAIE-KNPIALLRGAKWWLPKSR-NYDLLWNIVDKRNLVHRKLLRKLGFKGLRYVQ 134 (153)
T ss_pred eeEEecHHhH-hCCHHHHHHHHHHHHHhc-cccHHHHhHhcccHHHHHHHHHcCceeecccc
Confidence 2444322211 133444444444443333 77889999999999999999999999877643
No 80
>TIGR03243 arg_catab_AOST arginine and ornithine succinyltransferase subunits. In many bacteria, the sole member of this protein family is arginine N-succinyltransferase (EC 2.3.1.109), the AstA protein of the arginine succinyltransferase (ast) pathway. However, in Pseudomonas aeruginosa and several other species, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST).
Probab=98.07 E-value=6.7e-05 Score=52.77 Aligned_cols=136 Identities=15% Similarity=0.202 Sum_probs=85.3
Q ss_pred EeeCCCCChhhHHhhcCCccccccccCCCcCChHHHHHHHHHhhc---------cCCeEEEEEE--CCeEEEEEEEEeCC
Q 030910 9 LRPFKISDVDDFMGWAGDENVTKYCRWNTFTFRDDAVAFLKEVIK---------SHPWYRAICV--KDRPIGSIYVMPGI 77 (169)
Q Consensus 9 ir~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~--~~~~vG~~~~~~~~ 77 (169)
|||++.+|++.|.++.......- ..-+.+.+...+.+.+... +..+.|++++ .|+++|.+.+...-
T Consensus 2 vRpv~~~Dl~aL~~LA~~sg~G~---TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLED~~tg~vvGts~I~a~v 78 (335)
T TIGR03243 2 VRPVRTSDLDALMQLARESGIGL---TSLPADRAALGSRIARSEKSFAGESTRGEEGYLFVLEDTETGTVAGVSAIEAAV 78 (335)
T ss_pred cccCccccHHHHHHHHHHcCCCc---ccCCCCHHHHHHHHHHHHHHHhcccCCCCccEEEEEEeCCCCeEEEEEeEEecc
Confidence 79999999999999976533211 1222344444444333222 2335666665 69999999887643
Q ss_pred CCC---------------------------------CcEEEE-EEEeCCCccCcChHHHHHHHHHHHHHHh---------
Q 030910 78 GKD---------------------------------ERRGEI-GYAISAKYWGKGVATEAVKIAVACAFKE--------- 114 (169)
Q Consensus 78 ~~~---------------------------------~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~--------- 114 (169)
... ....++ +++++|+||+.|.|+.|-+.=.=+....
T Consensus 79 G~~~PfY~yrv~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~~G~LLSr~RfLFiA~~~erF~~~vi 158 (335)
T TIGR03243 79 GLDEPFYNYRVGTLVHASRELGVYNKIPTLTLSNDLTGSSELCTLFLDPDYRKGGNGRLLSRSRFLFIAAFRERFGDKII 158 (335)
T ss_pred cCCCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCCchhhHHHHHHHHHHhhHhhhhhhhe
Confidence 210 111455 3789999999999987655433333110
Q ss_pred --c----------C---------------------------------------------CceeEEEEeeccCHHHHHHHH
Q 030910 115 --L----------K---------------------------------------------YLDRIEGLVFSENKASQRVME 137 (169)
Q Consensus 115 --~----------~---------------------------------------------~~~~v~~~~~~~N~~a~~~y~ 137 (169)
+ | .++.+...|.++-.+|.++.+
T Consensus 159 AEmrG~~De~G~SPFWd~lg~hFF~mdF~~AD~Lsg~~~k~FIaeLMP~~PIYv~LLp~eAq~vIG~vH~~t~pA~~lLe 238 (335)
T TIGR03243 159 AEMRGVSDEQGRSPFWEALGRHFFSMDFAQADYLSGIGSKTFIAELMPKYPIYVPLLPEEAQDVIGQVHPDTRPARAMLE 238 (335)
T ss_pred eeccCccCCCCCCccHHHhhccccCCCHHHHHHHhcCCCceeHHHHCCCCCcccccCCHHHHHHhCCcCCCCHHHHHHHH
Confidence 0 0 234566667777889999999
Q ss_pred HcCCeEEeEE
Q 030910 138 KAGFIREGLL 147 (169)
Q Consensus 138 ~~Gf~~~~~~ 147 (169)
+-||+..+..
T Consensus 239 ~EGF~~~~yV 248 (335)
T TIGR03243 239 SEGFRYQGYV 248 (335)
T ss_pred HcCCCcCCcc
Confidence 9999887764
No 81
>PHA00432 internal virion protein A
Probab=98.05 E-value=4.1e-05 Score=46.75 Aligned_cols=131 Identities=13% Similarity=0.130 Sum_probs=70.4
Q ss_pred EEEeeCCCCChhhHHhhcCCccccccccCCCcCChHHHHHHHHHhhccCCeEEEEEECCeEEEEEEEEeCCCCCCcEEEE
Q 030910 7 ITLRPFKISDVDDFMGWAGDENVTKYCRWNTFTFRDDAVAFLKEVIKSHPWYRAICVKDRPIGSIYVMPGIGKDERRGEI 86 (169)
Q Consensus 7 i~ir~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~i 86 (169)
+.|||++.+|+..+ .+. ..+..+....... -.......++.+..+|.+++..+ ... ..
T Consensus 1 m~I~paT~~di~~~-~lr-~~D~~E~~a~g~~-----------~~~~~s~~~~~~~~~G~~~aI~G-----n~G---~~- 58 (137)
T PHA00432 1 MYIRQTTERDFDVF-NPS-FEDILEAKAYGIE-----------PSFPPDSECVTLSLDGFVLAIGG-----NQG---DQ- 58 (137)
T ss_pred CccccccHHHHHHc-CCC-HHHHHHHHhcCCC-----------CCCCCCceEEEEecCCeEEEEec-----CCC---Cc-
Confidence 35889999998888 322 2222222111110 01112335666666999998883 111 11
Q ss_pred EEEeCC-CccC--cChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeEEeeeeecCCEEeEeEEE
Q 030910 87 GYAISA-KYWG--KGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGLLRKYFFVKGKSVDIVVF 163 (169)
Q Consensus 87 ~~~v~~-~~rg--~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~~~~~~~~~g~~~d~~~~ 163 (169)
.|+|.. .-.+ +..-++..+.+..+.-.-+-..+.+.-.|...|..+++|.+++||+.... +-.+|.....+.+
T Consensus 59 vW~v~T~~v~~~~~~~~reF~k~~~~~ld~ml~~yp~LwNyV~~~N~~hir~Lk~lGf~f~~e----~~~~g~~F~~Fti 134 (137)
T PHA00432 59 VWFVTSDQVWRLTKKEKREFRKLIMEYRDMMLDQYPSLWNYVWVGNKSHIRFLKSIGAVFHNE----FTGDGCQFQLFTI 134 (137)
T ss_pred eEEEecHHhhhCChhhhHHHHHHHHHHHHHHHHhhhhhheeeecCCHHHHHHHHHcCeeeecc----cccCCceeEEEEe
Confidence 133322 1111 12333344334333311010567899999999999999999999998766 2244555544443
No 82
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.01 E-value=4.9e-05 Score=55.62 Aligned_cols=130 Identities=15% Similarity=0.205 Sum_probs=93.0
Q ss_pred eEEEeeCCCCChhhHHhhcCCccccccccCCCcCChHHHHHHHHHhhccCCeEEEEEE-----CCeEEEEEEEEeCCCCC
Q 030910 6 EITLRPFKISDVDDFMGWAGDENVTKYCRWNTFTFRDDAVAFLKEVIKSHPWYRAICV-----KDRPIGSIYVMPGIGKD 80 (169)
Q Consensus 6 ~i~ir~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~vG~~~~~~~~~~~ 80 (169)
.+++++....+++.+.++.+.. .+|.......+.+.++++.+. +....|.+.. |+.+||++.+......
T Consensus 413 ~l~vs~~de~~i~RIsQLtqkT--NQFnlTtkRy~e~dV~~~~~~---~~~li~sv~l~DKfgDnGiigvviv~kk~~~- 486 (574)
T COG3882 413 RLTVSKFDEVNIPRISQLTQKT--NQFNLTTKRYNEEDVRQMQED---PNFLIFSVSLKDKFGDNGIIGVVIVEKKESE- 486 (574)
T ss_pred EEEEeeccccCcHHHHHHhhcc--cceeechhhhcHHHHHHHhhC---CCeEEEEEEeccccccCceEEEEEEEecCCe-
Confidence 4678888899999999997754 333323344456666664432 1223333333 7889999999876632
Q ss_pred CcEEEEE-EEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeec--cCHHHHHHHHHcCCeEEeE
Q 030910 81 ERRGEIG-YAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFS--ENKASQRVMEKAGFIREGL 146 (169)
Q Consensus 81 ~~~~~i~-~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~--~N~~a~~~y~~~Gf~~~~~ 146 (169)
+.|. +.+.-..-|+++-.++|..+++.|... |++.+...-.| .|.+-..||+++||+..++
T Consensus 487 ---w~IDt~lmSCRVlgRkvE~~l~~~~~e~A~~~--gi~tir~~Y~pt~kN~pv~~FyE~mgf~l~~e 550 (574)
T COG3882 487 ---WFIDTFLMSCRVLGRKVEQRLMNSLEEQALSE--GINTIRGYYIPTEKNAPVSDFYERMGFKLKGE 550 (574)
T ss_pred ---EEhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CcceeeeEecccccCCcHHHHHHHhccccccc
Confidence 5453 555667789999999999999999766 99998876655 5889999999999996553
No 83
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=97.97 E-value=1.9e-05 Score=47.06 Aligned_cols=44 Identities=30% Similarity=0.456 Sum_probs=39.5
Q ss_pred EEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCC
Q 030910 88 YAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGF 141 (169)
Q Consensus 88 ~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf 141 (169)
++|+|++||+|+|+.+++.+++++... ++. .|..+..++.+.||
T Consensus 87 l~v~~~~rg~Gig~~Ll~~~~~~~~~~--g~~--------~~~~~~~~~~~~~~ 130 (156)
T COG0454 87 LYVLPEYRGKGIGSALLEAALEWARKR--GIS--------LNRLALEVYEKNGF 130 (156)
T ss_pred EEecchhhccchHHHHHHHHHHHHHHc--Cce--------ehHHHHHHHHhcCC
Confidence 789999999999999999999999554 555 78899999999998
No 84
>COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]
Probab=97.94 E-value=6.4e-05 Score=52.84 Aligned_cols=88 Identities=14% Similarity=0.061 Sum_probs=63.8
Q ss_pred CCeEEEEEECCeEEEEEEEEeCCCCCC-----cEEEEEEEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccC
Q 030910 55 HPWYRAICVKDRPIGSIYVMPGIGKDE-----RRGEIGYAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSEN 129 (169)
Q Consensus 55 ~~~~~~~~~~~~~vG~~~~~~~~~~~~-----~~~~i~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N 129 (169)
.....+++.+.++++-....+..-... ..+..++.+.|+|||+|..++|+.+.++...++ |+.-..++
T Consensus 38 ~~n~~vi~~nqkl~s~L~i~~f~~~f~~q~l~t~GIa~Vas~P~~R~~G~~~~Ll~~sLre~~~k--G~p~s~L~----- 110 (389)
T COG4552 38 EPNSYVIYMNQKLASRLHIPPFIFWFGNQVLPTAGIAGVASAPTYRRRGALRALLAHSLREIARK--GYPVSALH----- 110 (389)
T ss_pred CCcceEEeehhhhhhcccccchheeeCCeeeeccceEEEEechhhccCcHHHHHHHHHHHHHHHc--CCeeEEec-----
Confidence 345667777888888777765432211 113335678999999999999999999998555 88766654
Q ss_pred HHHHHHHHHcCCeEEeEEee
Q 030910 130 KASQRVMEKAGFIREGLLRK 149 (169)
Q Consensus 130 ~~a~~~y~~~Gf~~~~~~~~ 149 (169)
+.+.++|+|.||..-+....
T Consensus 111 P~s~~iYrKfGye~asn~~~ 130 (389)
T COG4552 111 PFSGGIYRKFGYEYASNYHE 130 (389)
T ss_pred cCchhhHhhccccccceEEE
Confidence 34678999999998776543
No 85
>PF06852 DUF1248: Protein of unknown function (DUF1248); InterPro: IPR009658 This entry represents a conserved region within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans. Note that some proteins in the entry contain more than one copy of this region.
Probab=97.80 E-value=0.0014 Score=42.49 Aligned_cols=122 Identities=21% Similarity=0.258 Sum_probs=69.4
Q ss_pred eeCCCCChhhHHhhcCCccccccccCCCcCChHHHHHHHHHhhccCCeEEEEEE--CCeEEEEEEEEeCCC---C-CCcE
Q 030910 10 RPFKISDVDDFMGWAGDENVTKYCRWNTFTFRDDAVAFLKEVIKSHPWYRAICV--KDRPIGSIYVMPGIG---K-DERR 83 (169)
Q Consensus 10 r~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~vG~~~~~~~~~---~-~~~~ 83 (169)
..+..+-++++..+..+. ...+ -.+....|- ....++-+.++++. .+++|+.+.+-...+ . +...
T Consensus 8 ~NP~~e~~d~fmk~~g~~-r~~F-------k~~Di~~wk-~sf~~~Y~l~~~~~KgT~~via~~~~~~~~~l~~~~d~pl 78 (181)
T PF06852_consen 8 INPPQEYFDQFMKLHGNE-RWNF-------KRNDIKLWK-ESFDDDYWLVLTCLKGTDRVIATVHLIRFDPLNPSPDKPL 78 (181)
T ss_pred eCCCHHHHHHHHHHhcCC-cccc-------cHHHHHHHH-HhhccCeEEEEEEEcCCCcEEEEEEEEEeccCCCCCCCCe
Confidence 345556677777776542 1111 234444444 33333344445554 577888887765443 1 2222
Q ss_pred EEEE-EEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHH-HcCCeEEeE
Q 030910 84 GEIG-YAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVME-KAGFIREGL 146 (169)
Q Consensus 84 ~~i~-~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~-~~Gf~~~~~ 146 (169)
..+| +|++|+|||+|+++.+...+.+.. ... +-+ ..+ ..|..+.++|. -+||...+.
T Consensus 79 ~~~G~~w~~p~yRg~~~~kl~~~~~~~~~-~~~-~~N-~~~---~~~~~~~~~w~k~~G~~~~~h 137 (181)
T PF06852_consen 79 QFIGFFWIDPEYRGKGIMKLQDDICMDEL-DSV-DDN-SVA---QGNVKMSNFWHKMFGFDDYGH 137 (181)
T ss_pred EEEeeeeeCCcccCcchHHHHHHHHHHHh-ccC-CCc-eee---ecCHHHHHHHHHHhCCCCCcc
Confidence 6667 679999999999975555554444 221 333 222 35566777776 678877766
No 86
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=97.74 E-value=0.00098 Score=41.22 Aligned_cols=114 Identities=11% Similarity=-0.038 Sum_probs=72.4
Q ss_pred EEEeeC-CCCChhhHHhhcCCccccccccCCCcCChHHHHHHHHHhhccCC-eEEEEEECCeEEEEEEEEeCCCCCCcEE
Q 030910 7 ITLRPF-KISDVDDFMGWAGDENVTKYCRWNTFTFRDDAVAFLKEVIKSHP-WYRAICVKDRPIGSIYVMPGIGKDERRG 84 (169)
Q Consensus 7 i~ir~~-~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~vG~~~~~~~~~~~~~~~ 84 (169)
+.++.. .++|++.+.+++............+..+.+..+.++.....+.. ..+++..+|++||+.........- .
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~g~~va~~~~~~~~~~~---~ 96 (142)
T PF13480_consen 20 VRFEVATDPADLEAFYELYRESWARRHGGFAPPFSRDFFRDLLRSLAESGRLRLFVLYDGGEPVAFALGFRHGGTL---Y 96 (142)
T ss_pred EEEEEeCCHHHHHHHHHHHHHHHhhhhCCCCCcchHHHHHHHHHhhccCCCEEEEEEEECCEEEEEEEEEEECCEE---E
Confidence 555443 56678888887754322220001223345555566655533333 445555599999998877755421 2
Q ss_pred EEEEEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEe
Q 030910 85 EIGYAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLV 125 (169)
Q Consensus 85 ~i~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~ 125 (169)
......+|+++..+.|..++..+++++.++ |++.+.+..
T Consensus 97 ~~~~g~~~~~~~~~~~~~l~~~~i~~a~~~--g~~~~d~g~ 135 (142)
T PF13480_consen 97 YWYGGYDPEYRKYSPGRLLLWEAIRWAIER--GLRYFDFGG 135 (142)
T ss_pred EEEEEECHhhHhCCHHHHHHHHHHHHHHHC--CCCEEEECC
Confidence 223446999999999999999999999776 888887654
No 87
>PHA00771 head assembly protein
Probab=97.51 E-value=0.0016 Score=38.96 Aligned_cols=105 Identities=14% Similarity=0.100 Sum_probs=77.8
Q ss_pred CeEEEEEECCeEEEEEEEEeCCCCCCcEEEEEEEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHH
Q 030910 56 PWYRAICVKDRPIGSIYVMPGIGKDERRGEIGYAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRV 135 (169)
Q Consensus 56 ~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~i~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~ 135 (169)
..++.+-..|+.=|.+.+....+- ..+..-.-+|++||.- ++.-....+|+.+.. .+..+...+...-...+-.
T Consensus 38 ~~Y~g~~~~~~yeGivl~~eV~p~---~~ecHa~y~P~fRG~y--a~~~r~F~kwlL~Nt-~f~~vit~vp~kt~~G~vi 111 (151)
T PHA00771 38 CRYFEVNVHGQFGGIVYYNEIQPL---TFDCHAMYLPEIRGFS--KEIGLAFWRYILTNT-TVQCVTSFAARKFRHGQMY 111 (151)
T ss_pred cEEEeecccceeeeEEEEEEeeeE---EEEEEeeeCccccchh--HHHHHHHHHHHhcCC-ceeEEEEecccccccchhh
Confidence 344444446666677665444332 1444445689999754 388888999998888 8888888888887888888
Q ss_pred HHHcCCeEEeEEeeeeecCCEEeEeEEEEeeccC
Q 030910 136 MEKAGFIREGLLRKYFFVKGKSVDIVVFSTVEAD 169 (169)
Q Consensus 136 y~~~Gf~~~~~~~~~~~~~g~~~d~~~~~~~~~~ 169 (169)
-+-+|.+.+|.+++++ .++ .|+-+|++++++
T Consensus 112 c~lig~rRVG~id~a~-~g~--~~vT~Yq~TR~~ 142 (151)
T PHA00771 112 CAMIGLKRVGTIKKYF-KGV--DDVTFYSATREE 142 (151)
T ss_pred hhhhCCceeeeHHHHh-cCC--CceEEEEcCHHH
Confidence 8999999999999887 444 899999988753
No 88
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=97.44 E-value=0.0004 Score=37.48 Aligned_cols=25 Identities=24% Similarity=0.141 Sum_probs=22.5
Q ss_pred EEEeCCCccCcChHHHHHHHHHHHH
Q 030910 87 GYAISAKYWGKGVATEAVKIAVACA 111 (169)
Q Consensus 87 ~~~v~~~~rg~G~g~~l~~~~~~~~ 111 (169)
.+||+|.+|++||+++|++.+....
T Consensus 10 RIWV~~~~RR~GIAt~Lld~ar~~~ 34 (70)
T PF13880_consen 10 RIWVSPSHRRKGIATRLLDAARENF 34 (70)
T ss_pred EEEeChhhhhhhHHHHHHHHHHHhc
Confidence 3899999999999999999988765
No 89
>PF00765 Autoind_synth: Autoinducer synthetase; InterPro: IPR001690 Bacterial species have many methods of controlling gene expression and cell growth. Regulation of gene expression in response to changes in cell density is termed quorum sensing [, ]. Quorum-sensing bacteria produce, release and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. Once a threshold of these molecules is reached, a signal transduction cascade is triggered that ultimately leads to behavioural changes in the bacterium []. Autoinducers are thus clearly important mediators of molecular communication. Conjugal transfer of Agrobacterium octopine-type Ti plasmids is activated by octopine, a metabolite released from plant tumours []. Octopine causes conjugal donors to secrete a pheromone, Agrobacterium autoinducer (AAI), and exogenous AAI further stimulates conjugation. The putative AAI synthase and an AAI-responsive transcriptional regulator have been found to be encoded by the Ti plasmid traI and traR genes, respectively. TraR and TraI are similar to the LuxR and LuxI regulatory proteins of Vibrio fischeri, and AAI is similar in structure to the diffusable V. fischeri autoinducer, the inducing ligand of LuxR. TraR activates target genes in the presence of AAI and also activates traR and traI themselves, creating two positive-feedback loops. TraR-AAI-mediated activation in wild-type Agrobacterium strains is enhanced by culturing on solid media, suggesting a possible role in cell density sensing []. Production of light by the marine bacterium V. fischeri and by recombinant hosts containing cloned lux genes is controlled by the density of the culture []. Density-dependent regulation of lux gene expression has been shown to require a locus consisting of the luxR and luxI genes. In these and other Gram-negative bacteria, N-(3-oxohexanoyl)-L-homoserine lactone (OHHL) acts as the autoinducer by binding to transcriptional regulatory proteins and activating them []. OHHL and related molecules, such as N-butanoyl- (BHL), N-hexanoyl- (HHL) and N-oxododecanoyl- (PAI) homoserine lactones, are produced by a family of proteins that share a high level of sequence similarity. Proteins which currently members of this family include: luxI from V. fischeri. ahyI and asaI from Aeromonas species, which synthesize BHL and whose targets are ahyR and asaR respectively. carI from Erwinia carotovora. The target of OHHL is carR which activates genes involved in the biosynthesis of carbapenem antibiotics. eagI from Enterobacter agglomerans. The target of OHHL is not yet known. esaI from Erwinia stewartii. expI from Erwinia carotovora. lasI from Pseudomonas aeruginosa, which synthesizes PAI and whose target is lasR which activates the transcription of the elastase gene. rhlI (or vsmI) from P. aeruginosa, which synthesizes BHL and HHL and whose target is rhlR. swrI from Serratia liquefaciens, which synthesizes BHL. yenI from Yersinia enterocolitica. ; GO: 0007165 signal transduction; PDB: 3P2H_A 3P2F_A 1KZF_A 1K4J_A 1RO5_A.
Probab=97.20 E-value=0.026 Score=36.88 Aligned_cols=98 Identities=20% Similarity=0.252 Sum_probs=65.7
Q ss_pred CeEEEEEECCeEEEEEEEEeCCCC------------------CCcEEEEE-EEeCCCccC------cChHHHHHHHHHHH
Q 030910 56 PWYRAICVKDRPIGSIYVMPGIGK------------------DERRGEIG-YAISAKYWG------KGVATEAVKIAVAC 110 (169)
Q Consensus 56 ~~~~~~~~~~~~vG~~~~~~~~~~------------------~~~~~~i~-~~v~~~~rg------~G~g~~l~~~~~~~ 110 (169)
..+.++..+|+++|++-+-+.... ....+|+. ++|+++..+ .-+...|+..++++
T Consensus 45 ~~ylv~~~~g~v~g~~RLlptt~p~ML~~~F~~ll~~~~~p~~~~vwE~SRf~v~~~~~~~~~~~~~~~~~~L~~~~~e~ 124 (182)
T PF00765_consen 45 AVYLVALDDGRVVGCARLLPTTGPYMLSDVFPHLLPDGPAPRSPDVWELSRFCVDPDRRRSRAGSRSPVTMELLLGMVEF 124 (182)
T ss_dssp -EEEEEEETTEEEEEEEEEETTS--HHHHCTGGGHTTS---SSTTEEEEEEEEE-HCCCHHCHSCC-THHHHHHHHHHHH
T ss_pred CeEEEEEECCEEEEEeeeccCCCcchhhhHHHHHhCCCCCCCCCcceeeeEEEEcccccccccccccHHHHHHHHHHHHH
Confidence 344444558999999999987533 12338885 889877432 24678999999999
Q ss_pred HHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeEEeeeeecCCEEeE
Q 030910 111 AFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGLLRKYFFVKGKSVD 159 (169)
Q Consensus 111 ~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~~~~~~~~~g~~~d 159 (169)
|.+. |++.+..-+. .+..+++.++||...-.-+.. ..+|+..=
T Consensus 125 a~~~--gi~~~v~V~~---~~~~r~l~r~G~~~~~lG~~~-~~~~~~~~ 167 (182)
T PF00765_consen 125 ALSN--GIRHIVGVVD---PAMERILRRAGWPVRRLGPPR-SIGGERVV 167 (182)
T ss_dssp HHCT--T-SEEEEEEE---HHHHHHHHHCT-EEEESSEEE-EETTEEEE
T ss_pred HHHC--CCCEEEEEEC---hHHHHHHHHcCCceEECCCCe-eeCCeEEE
Confidence 9665 9999998775 568999999999876553322 24555333
No 90
>PRK01305 arginyl-tRNA-protein transferase; Provisional
Probab=97.12 E-value=0.038 Score=37.69 Aligned_cols=100 Identities=12% Similarity=-0.020 Sum_probs=66.2
Q ss_pred CChHHHHHHHHHhhccCCeEEEEEECCeEEEEEEEEeCCCCCCcEEEEEEEeCCCccCcChHHHHHHHHHHHHHHhcCCc
Q 030910 39 TFRDDAVAFLKEVIKSHPWYRAICVKDRPIGSIYVMPGIGKDERRGEIGYAISAKYWGKGVATEAVKIAVACAFKELKYL 118 (169)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~i~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~ 118 (169)
.+.+....++..... .....-...+|++||++.+...+..- .-+..+-+|++-..++|+-++-.-+++|+ +. |.
T Consensus 128 ~~~~~y~~Fl~~~~~-~t~~~ey~~~g~LiaVav~D~l~d~l---SAVY~FyDPd~~~~SLG~~~iL~qI~~ak-~~-gl 201 (240)
T PRK01305 128 PSRDQYAQFLEDSWV-NTRFIEFRGDGKLVAVAVTDVLDDGL---SAVYTFYDPDEEHRSLGTFAILWQIELAK-RL-GL 201 (240)
T ss_pred CCHHHHHHHHhcCCC-CcEEEEEEeCCeEEEEEEEeccCCce---eeEEEeeCCCccccCCHHHHHHHHHHHHH-Hc-CC
Confidence 356666677665432 22333333599999999998776542 33456679999999999999999999995 45 99
Q ss_pred eeEEEEeeccCHHHHHHHHHcCCeEEeE
Q 030910 119 DRIEGLVFSENKASQRVMEKAGFIREGL 146 (169)
Q Consensus 119 ~~v~~~~~~~N~~a~~~y~~~Gf~~~~~ 146 (169)
+.+++.-.-.+-+ ++-=|.-|++.-.
T Consensus 202 ~y~YLGY~I~~c~--kM~YK~~f~P~E~ 227 (240)
T PRK01305 202 PYVYLGYWIKGSR--KMNYKARFRPLEI 227 (240)
T ss_pred CeEeeeEEECCCC--cccccccCCccee
Confidence 9999766554422 2223444554433
No 91
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=97.11 E-value=0.0062 Score=36.40 Aligned_cols=77 Identities=9% Similarity=0.020 Sum_probs=51.8
Q ss_pred CCeEEEEEEEEeC-----CCCCCc------EEEEEEEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHH
Q 030910 64 KDRPIGSIYVMPG-----IGKDER------RGEIGYAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKAS 132 (169)
Q Consensus 64 ~~~~vG~~~~~~~-----~~~~~~------~~~i~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a 132 (169)
.+.++|+.-+... +..... .+.+.++|+++.|++|+|++|++.+++. + ++.--.+.++......
T Consensus 17 ~g~viG~LKVG~K~Lfl~d~~g~~~e~~~~~cvLDFyVhes~QR~G~Gk~LF~~ML~~---e--~~~p~~~a~DrPS~Kl 91 (120)
T PF05301_consen 17 KGAVIGFLKVGYKKLFLLDERGQHREIEPLLCVLDFYVHESRQRRGYGKRLFDHMLQE---E--NVSPHQLAIDRPSPKL 91 (120)
T ss_pred CceEEEEEEEeeeeEEEEcCCCCEEEecccceeeeEEEEeceeccCchHHHHHHHHHH---c--CCCcccceecCCcHHH
Confidence 3668887665443 221111 1456789999999999999999999863 3 4444556677777788
Q ss_pred HHHHHHcCCeEEeE
Q 030910 133 QRVMEKAGFIREGL 146 (169)
Q Consensus 133 ~~~y~~~Gf~~~~~ 146 (169)
++|.+|. |.....
T Consensus 92 l~Fl~Kh-y~L~~~ 104 (120)
T PF05301_consen 92 LSFLKKH-YGLQRY 104 (120)
T ss_pred HHHHHHh-cCCCcC
Confidence 8888876 544433
No 92
>COG3375 Uncharacterized conserved protein [Function unknown]
Probab=97.05 E-value=0.039 Score=36.85 Aligned_cols=102 Identities=14% Similarity=0.094 Sum_probs=68.4
Q ss_pred HHHHHHhhccCCeEEEEEE-CCeEEEEEEEEeCCCCCCcEEEE---EEEeCCCccCcChHHHHHHHHHHHHHHhcCCcee
Q 030910 45 VAFLKEVIKSHPWYRAICV-KDRPIGSIYVMPGIGKDERRGEI---GYAISAKYWGKGVATEAVKIAVACAFKELKYLDR 120 (169)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~-~~~~vG~~~~~~~~~~~~~~~~i---~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~ 120 (169)
...+............++. ++++||...-.+...... ..+ -..|.|++++.|+|-+|-..--+++.++ |+..
T Consensus 35 ~d~i~al~~~GGlvlgAf~~dg~lVGls~G~pg~r~g~--~y~ySH~~gV~e~~k~sglg~aLK~~Qre~a~~~--G~tl 110 (266)
T COG3375 35 ADTIRALRYHGGLVLGAFSADGRLVGLSYGYPGGRGGS--LYLYSHMLGVREEVKGSGLGVALKMKQRERALSM--GYTL 110 (266)
T ss_pred HHHHHHHHhcCCeEEEEEcCCCcEEEEEeccCCcCCCc--eeeeeeehhccccccccchhhhhHHHHHHHHHhc--Ceee
Confidence 3444443334455666665 669999988777322211 122 1458999999999999998888898666 9999
Q ss_pred EEEEeeccCHHHHHH-HHHcCCeEEeEEeee
Q 030910 121 IEGLVFSENKASQRV-MEKAGFIREGLLRKY 150 (169)
Q Consensus 121 v~~~~~~~N~~a~~~-y~~~Gf~~~~~~~~~ 150 (169)
+..+-+|-|..--+| ..|+|-.-.-..+++
T Consensus 111 i~WTfDPl~alNA~fNi~KLGa~artYi~nf 141 (266)
T COG3375 111 IAWTFDPLNALNARFNISKLGAIARTYIKNF 141 (266)
T ss_pred EEEecccchhhhhhcchhhhceeEEEeeccc
Confidence 999999988643333 457777655444443
No 93
>cd04264 DUF619-NAGS DUF619 domain of various N-acetylglutamate Synthases of the fungal arginine-biosynthetic pathway and urea cycle found in humans and fish. DUF619-NAGS: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=96.99 E-value=0.013 Score=34.19 Aligned_cols=66 Identities=12% Similarity=0.019 Sum_probs=48.1
Q ss_pred EEEEEECCeEEEEEEEEeCCCCCCcEEEEE-EEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHH
Q 030910 58 YRAICVKDRPIGSIYVMPGIGKDERRGEIG-YAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKA 131 (169)
Q Consensus 58 ~~~~~~~~~~vG~~~~~~~~~~~~~~~~i~-~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~ 131 (169)
.+.++.++...|.+.+.+..+.... +.++ +.|.+..||+|+|..++..+.+- .+++...+.++|+.
T Consensus 10 ~~~~y~~e~y~~~aIvt~~~~~~~~-~yLdKfaV~~~~~g~gvad~vf~~i~~d-------~~~L~Wrsr~~n~~ 76 (99)
T cd04264 10 LHAIYLSEGYNAAAIVTYEGVNNGV-PYLDKFAVSSSAQGEGTSDALWRRLRRD-------FPKLFWRSRKTNPI 76 (99)
T ss_pred ceEEEEeCCceEEEEEeccCCCCCc-eEEEEEEEchhhhhcChHHHHHHHHHhh-------CCceEEEeCCCCcc
Confidence 4555667778888888776532222 6776 88999999999999988877743 35577778877763
No 94
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=96.88 E-value=0.0055 Score=42.53 Aligned_cols=62 Identities=23% Similarity=0.269 Sum_probs=50.7
Q ss_pred ChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeEEeeeeecCCEEeEeEEEEeecc
Q 030910 98 GVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGLLRKYFFVKGKSVDIVVFSTVEA 168 (169)
Q Consensus 98 G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~~~~~~~~~g~~~d~~~~~~~~~ 168 (169)
|-...++..+.+.|.++ ++.+|.+.|..++ ..+|++.||..+|..+.++ +|+ |.++|+...+
T Consensus 21 ~~~~~~~~~~~~~a~~~--~~~ki~~~~~~~~---~~~~~~~g~~~e~~i~~~f--~g~--~~~~~~~~~~ 82 (266)
T TIGR03827 21 NDVEALIPDLDALAKKE--GYTKIIAKVPGSD---KPLFEERGYLEEAKIPGYF--NGH--DAYFMSKYLD 82 (266)
T ss_pred ccHHHHHHHHHHHHHHc--CCcEEEEEccHHH---HHHHHHCCCeEEEeccccc--CCC--ceEEEEEcCc
Confidence 44778899999999565 9999999998775 7799999999999998653 554 7888887654
No 95
>PF01233 NMT: Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain; InterPro: IPR022676 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the N-terminal region. ; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 4A33_A 3H5Z_A 4A2Z_A 2WSA_A ....
Probab=96.86 E-value=0.051 Score=34.42 Aligned_cols=112 Identities=16% Similarity=0.187 Sum_probs=64.2
Q ss_pred EEEeeCCCCC---hhhHHhhcCCccccccccCCCcCChHHHHHHHHHhhccCC----eEEEEEE--CCeEEEEEEEEeCC
Q 030910 7 ITLRPFKISD---VDDFMGWAGDENVTKYCRWNTFTFRDDAVAFLKEVIKSHP----WYRAICV--KDRPIGSIYVMPGI 77 (169)
Q Consensus 7 i~ir~~~~~d---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~--~~~~vG~~~~~~~~ 77 (169)
+....+..+| ++++++++++..+..- ..........++++-.+.+.. +..++.. ++++||++..-+..
T Consensus 24 F~W~~~dl~d~~~l~ely~lL~~nYVEDd---d~~fRf~YS~efL~WaL~pPg~~~~whiGVR~~~~~kLvgfIsaip~~ 100 (162)
T PF01233_consen 24 FEWSTLDLNDDEELKELYELLNENYVEDD---DNMFRFDYSKEFLKWALKPPGWKKEWHIGVRVKSSKKLVGFISAIPAT 100 (162)
T ss_dssp EEEEE--TTSHHHHHHHHHHHHHHSSBTT---TSSEEE---HHHHHHHHTSTT--GGGEEEEEETTTTEEEEEEEEEEEE
T ss_pred CEEEecCCCCHHHHHHHHHHHHhcCccCC---cceEEeeCCHHHHhheeeCcCCccceEEEEEECCCCEEEEEEccceEE
Confidence 4445555444 4556666654332221 111123333455554444443 5777776 79999999988765
Q ss_pred CCC----CcEEEEE-EEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEE
Q 030910 78 GKD----ERRGEIG-YAISAKYWGKGVATEAVKIAVACAFKELKYLDRIE 122 (169)
Q Consensus 78 ~~~----~~~~~i~-~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~ 122 (169)
-.- -...+|. ++|++..|.++++--|++.+-+.+-... -.+.++
T Consensus 101 irv~~~~~~~~eINFLCVhKklRskrlAPvLIkEItRRvn~~g-I~qAvy 149 (162)
T PF01233_consen 101 IRVRDKVIKMVEINFLCVHKKLRSKRLAPVLIKEITRRVNLQG-IWQAVY 149 (162)
T ss_dssp EEETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHHTTT---EEEE
T ss_pred EEEeeeEeeeeeEEEEeecHhHhhcCCcHHHHHHHHHHhhhcC-ceeeee
Confidence 321 1226665 6799999999999999999999985442 334444
No 96
>KOG3698 consensus Hyaluronoglucosaminidase [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.011 Score=44.80 Aligned_cols=53 Identities=9% Similarity=-0.002 Sum_probs=44.4
Q ss_pred CccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeEE
Q 030910 93 KYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGLL 147 (169)
Q Consensus 93 ~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~~ 147 (169)
+.-.-|+.++++.-++.-+..+ |...-.+.|.++..+-++||.++||...+..
T Consensus 827 ~a~D~~~~k~m~~vll~tL~aN--GsrGaf~~V~~dD~~~~~fys~lG~~d~~~~ 879 (891)
T KOG3698|consen 827 DASDAHPMKKMIQVLLVTLAAN--GSRGAFLTVAIDDIERQKFYSELGLTDLGLS 879 (891)
T ss_pred ccccchHHHHHHHHHHHHHHhc--CCcceeEEechhHHHHHHHHHHhchHHHhHh
Confidence 3345688899999888887554 8999999999999999999999999877653
No 97
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=96.71 E-value=0.0028 Score=46.50 Aligned_cols=79 Identities=18% Similarity=0.159 Sum_probs=56.8
Q ss_pred CCeEEEEEEEEeCCCCCCc------EEEE---EEE-----e---CCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEee
Q 030910 64 KDRPIGSIYVMPGIGKDER------RGEI---GYA-----I---SAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVF 126 (169)
Q Consensus 64 ~~~~vG~~~~~~~~~~~~~------~~~i---~~~-----v---~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~ 126 (169)
++.++|+..+......... ++.+ ..+ | ...+|.+|+|++|++.+++.|.++ +..+|.+.
T Consensus 415 ~d~lig~lrlR~p~e~~~r~e~~~~~aivrelhvyg~~vpig~~~~~~QH~G~G~~L~~~AE~ia~ee--~~~ki~vi-- 490 (515)
T COG1243 415 NDILIGFLRLREPSEGAHREEIDDKTAIVRELHVYGSEVPIGKREDEWQHRGYGRELLEEAERIAREE--GAKKILVI-- 490 (515)
T ss_pred hhhhhheeeecccccchhhhhcccchhhhhhhhccccccccccCcchhhcccHHHHHHHHHHHHHHhh--ccccEEEE--
Confidence 4778999999887653211 1111 111 2 357899999999999999999666 67777642
Q ss_pred ccCHHHHHHHHHcCCeEEeEE
Q 030910 127 SENKASQRVMEKAGFIREGLL 147 (169)
Q Consensus 127 ~~N~~a~~~y~~~Gf~~~~~~ 147 (169)
+-..++..|.|+||...|..
T Consensus 491 -SgiG~ReYy~k~GY~~~gpY 510 (515)
T COG1243 491 -SGIGVREYYRKLGYELDGPY 510 (515)
T ss_pred -ecccHHHHHHHhCccccCCc
Confidence 44679999999999988763
No 98
>PF04377 ATE_C: Arginine-tRNA-protein transferase, C terminus; InterPro: IPR007472 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the C-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=96.55 E-value=0.078 Score=32.50 Aligned_cols=84 Identities=11% Similarity=-0.065 Sum_probs=58.9
Q ss_pred ChHHHHHHHHHhhccCCeEEEEEECCeEEEEEEEEeCCCCCCcEEEEEEEeCCCccCcChHHHHHHHHHHHHHHhcCCce
Q 030910 40 FRDDAVAFLKEVIKSHPWYRAICVKDRPIGSIYVMPGIGKDERRGEIGYAISAKYWGKGVATEAVKIAVACAFKELKYLD 119 (169)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~i~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~ 119 (169)
+.+....++..... .....-...+|++||++.+...+..- .-+-.+-+|++...++|+-++-..+++|++ . +++
T Consensus 24 ~~~~y~~fl~~~~~-~t~~~~~~~~~kLiav~v~D~l~~gl---SaVY~fyDPd~~~~SlG~~~iL~eI~~a~~-~-~l~ 97 (128)
T PF04377_consen 24 SQEQYRRFLCSSPL-GTYHLEYRLDGKLIAVAVVDILPDGL---SAVYTFYDPDYSKRSLGTYSILREIELARE-L-GLP 97 (128)
T ss_pred CHHHHHHHHhCCCC-CCEEEEEEeCCeEEEEEEeecccchh---hheeeeeCCCccccCcHHHHHHHHHHHHHH-c-CCC
Confidence 35566666554322 23444444599999998888776532 224455699999999999999999999955 4 999
Q ss_pred eEEEEeeccC
Q 030910 120 RIEGLVFSEN 129 (169)
Q Consensus 120 ~v~~~~~~~N 129 (169)
.+++.=.-.+
T Consensus 98 y~YLGY~I~~ 107 (128)
T PF04377_consen 98 YYYLGYWIHG 107 (128)
T ss_pred EEeeCeEeCC
Confidence 9987554443
No 99
>PRK13834 putative autoinducer synthesis protein; Provisional
Probab=96.55 E-value=0.12 Score=34.56 Aligned_cols=77 Identities=16% Similarity=0.222 Sum_probs=55.8
Q ss_pred CCeEEEEEEEEeCCCC------------------CCcEEEEE-EEeCCCcc---CcC----hHHHHHHHHHHHHHHhcCC
Q 030910 64 KDRPIGSIYVMPGIGK------------------DERRGEIG-YAISAKYW---GKG----VATEAVKIAVACAFKELKY 117 (169)
Q Consensus 64 ~~~~vG~~~~~~~~~~------------------~~~~~~i~-~~v~~~~r---g~G----~g~~l~~~~~~~~~~~~~~ 117 (169)
+|+++|++-+-+.... ....+|++ ++|+++++ +.+ +...|+..+.+++... |
T Consensus 62 ~g~vvG~~RLlptt~p~ml~~~fp~l~~~~~~~~~~~v~E~SRf~V~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~--G 139 (207)
T PRK13834 62 SGRVAGCARLLPAIGPTMLAQVFPQLLPAGRLNAHPAMIESSRFCVDTALAEGRGGGQLHEATLTMFAGIIEWSMAN--G 139 (207)
T ss_pred CCeEEEEEecccCCCcchhhhhcHHhcCCCCCCCCCCEEEEeeeEEcccccccccccccCHHHHHHHHHHHHHHHHC--C
Confidence 7899999877654221 12338886 88988753 222 5678999999999555 9
Q ss_pred ceeEEEEeeccCHHHHHHHHHcCCeEEe
Q 030910 118 LDRIEGLVFSENKASQRVMEKAGFIREG 145 (169)
Q Consensus 118 ~~~v~~~~~~~N~~a~~~y~~~Gf~~~~ 145 (169)
++.++.-+.+ ...+++.++|+....
T Consensus 140 i~~~~~v~~~---~~~r~l~r~G~~~~~ 164 (207)
T PRK13834 140 YTEIVTATDL---RFERILARAGWPMQR 164 (207)
T ss_pred CCEEEEEECH---HHHHHHHHcCCCeEE
Confidence 9999886664 577899999987653
No 100
>COG3916 LasI N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.51 E-value=0.12 Score=34.19 Aligned_cols=96 Identities=15% Similarity=0.186 Sum_probs=63.6
Q ss_pred CCeEEEEEE-CCeEEEEEEEEeCCCC------------------CCcEEEEE-EEeCC--CccCc---C-hHHHHHHHHH
Q 030910 55 HPWYRAICV-KDRPIGSIYVMPGIGK------------------DERRGEIG-YAISA--KYWGK---G-VATEAVKIAV 108 (169)
Q Consensus 55 ~~~~~~~~~-~~~~vG~~~~~~~~~~------------------~~~~~~i~-~~v~~--~~rg~---G-~g~~l~~~~~ 108 (169)
+..+.++.. +|+++|++-+-+.... ....+|.. |+|++ .-++. . ++.+++.-++
T Consensus 51 ~t~Yll~~~~~g~I~G~~RlLptt~P~mL~~vF~~Ll~~~~~P~~p~vwEsSRF~vd~~~a~~~~g~~~~a~~el~~g~i 130 (209)
T COG3916 51 DTVYLLALTSDGRIVGCVRLLPTTGPYMLTDVFPALLEGGPPPSSPGVWESSRFAVDKPSARRAAGGVSPAAYELFAGMI 130 (209)
T ss_pred CceEEEEEcCCCcEEEEEEeccCCCcchhhhhhHHHhcCCCCCCCCCeEEEeeeeeccccchhhcCCccHHHHHHHHHHH
Confidence 334444424 8999999988776432 11236664 66664 22222 2 4778999999
Q ss_pred HHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeEEeeeeecCCE
Q 030910 109 ACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGLLRKYFFVKGK 156 (169)
Q Consensus 109 ~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~~~~~~~~~g~ 156 (169)
+++... |+++|...+. ...-+.+++.||..+..-+-. ..+++
T Consensus 131 e~a~~~--G~~~IvtVt~---~~meril~r~Gw~~~riG~~~-~ig~~ 172 (209)
T COG3916 131 EYALAR--GITGIVTVTD---TGMERILRRAGWPLTRIGPPL-TIGNE 172 (209)
T ss_pred HHHHHc--CCceEEEEEc---hHHHHHHHHcCCCeEEcCCce-eeCCe
Confidence 999555 9999998776 568999999999877554322 24444
No 101
>cd04265 DUF619-NAGS-U DUF619 domain of various N-acetylglutamate Synthases (NAGS) of the urea (U) cycle of humans and fish. This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=96.40 E-value=0.058 Score=31.47 Aligned_cols=65 Identities=14% Similarity=0.076 Sum_probs=44.7
Q ss_pred EEEEEECCeEEEEEEEEeCCCCCCcEEEEE-EEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHH
Q 030910 58 YRAICVKDRPIGSIYVMPGIGKDERRGEIG-YAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKA 131 (169)
Q Consensus 58 ~~~~~~~~~~vG~~~~~~~~~~~~~~~~i~-~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~ 131 (169)
.+.++.++..=|.+.+.+... +.. +.++ +.|.+..||+|+|..+++.+.+ + .+++...+.++|+.
T Consensus 11 ~~~~y~~e~y~~~aivt~~~~-~~~-~yLdKfaV~~~~~g~gv~d~vf~~i~~----d---~~~L~Wrsr~~n~~ 76 (99)
T cd04265 11 LHTIYLSEGYNAAAIVTNEEV-DGV-PYLDKFAVSSSAQGEGTGEALWRRLRR----D---FPKLFWRSRSTNPI 76 (99)
T ss_pred ceEEEEeCCCcEEEEEeccCC-CCc-eEEEEEEEchhhhhcChHHHHHHHHHh----h---CCceEEEeCCCCcc
Confidence 344555666667777766542 112 6776 8899999999999998887764 2 24577778877753
No 102
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=96.36 E-value=0.029 Score=43.72 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=24.4
Q ss_pred EEEEeCCCccCcChHHHHHHHHHHHHH
Q 030910 86 IGYAISAKYWGKGVATEAVKIAVACAF 112 (169)
Q Consensus 86 i~~~v~~~~rg~G~g~~l~~~~~~~~~ 112 (169)
+.+.|+|+|++.|+|+++++.+.+|..
T Consensus 618 VRIAvhP~y~~MGYGsrAvqLL~~y~e 644 (1011)
T KOG2036|consen 618 VRIAVHPEYQKMGYGSRAVQLLTDYFE 644 (1011)
T ss_pred EEEEeccchhccCccHHHHHHHHHHHh
Confidence 357899999999999999999999974
No 103
>TIGR03694 exosort_acyl putative PEP-CTERM/exosortase system-associated acyltransferase. Members of this protein family are restricted to bacterial species with the PEP-CTERM/exosortase system predicted to act in exopolysaccharide-associated protein targeting. PSI-BLAST and CDD reveal relationships to the acyltransferase family that includes N-acyl-L-homoserine lactone synthetase. Several members of this family may be found in a single genome. These proteins likely contribute to chemical modifications in exopolysaccharide and biofilm structural material production.
Probab=96.29 E-value=0.19 Score=34.47 Aligned_cols=96 Identities=10% Similarity=0.058 Sum_probs=65.3
Q ss_pred CeEEEEEE--CCeEEEEEEEEeCC---C------------------------CCCcEEEEE-EEeCCCccCc--------
Q 030910 56 PWYRAICV--KDRPIGSIYVMPGI---G------------------------KDERRGEIG-YAISAKYWGK-------- 97 (169)
Q Consensus 56 ~~~~~~~~--~~~~vG~~~~~~~~---~------------------------~~~~~~~i~-~~v~~~~rg~-------- 97 (169)
..++++.. +|++||++-+.+.. + .....+|++ ++|++++|++
T Consensus 55 ~~h~l~~~~~~g~vvG~~RLl~t~~~~p~~~~p~e~~~~~~~~~~~~~~~~~~~~~i~E~SRf~V~~~~r~r~~~~~~~~ 134 (241)
T TIGR03694 55 SVHSLLRHRRTGTFVGCVRLVLPNSSDPDQPFPFEKHCSHSLDGLFLDPRRLPRSRIAEVSRLAVSKDFRRRKGEKLKPS 134 (241)
T ss_pred CcEEEEEECCCCCEEEEEEEeccccccccccccHHHHhccccchhhcCccccCCCceEEeehheECHhHhCCcccccccc
Confidence 44555554 58999999987641 0 011237775 8899998873
Q ss_pred C--------------------hHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeEEeeeeecCCEE
Q 030910 98 G--------------------VATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGLLRKYFFVKGKS 157 (169)
Q Consensus 98 G--------------------~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~~~~~~~~~g~~ 157 (169)
| +...|+..+.+++... |++.+++.+.+ +..+++.++|+.....-+ ....+|..
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~--Gi~~~~~v~~~---~l~r~l~r~G~~~~~lG~-~~~~~G~r 208 (241)
T TIGR03694 135 GVGVIETEAPFSESERRRFPHIPLGLYLGLIALSSAN--GITHWYAIMEP---RLARLLSRFGIQFRQVGP-PVDYHGLR 208 (241)
T ss_pred cccccccccccchhhcccCchHHHHHHHHHHHHHHHC--CCcEEEEEeCH---HHHHHHHHhCCceEEcCC-CeeECcEe
Confidence 2 5577999999999555 99999887765 577899999987643322 22345554
No 104
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=96.26 E-value=0.17 Score=36.36 Aligned_cols=137 Identities=9% Similarity=-0.057 Sum_probs=87.2
Q ss_pred eEEEeeCCCCChhhHHhhcCCccccccccCCCcCChHHHHHHHHHhhccCCeEEEEE-ECCeEEEEEEEEeCCCCCCcEE
Q 030910 6 EITLRPFKISDVDDFMGWAGDENVTKYCRWNTFTFRDDAVAFLKEVIKSHPWYRAIC-VKDRPIGSIYVMPGIGKDERRG 84 (169)
Q Consensus 6 ~i~ir~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vG~~~~~~~~~~~~~~~ 84 (169)
.++++. .+|++.+++++...-.. . ..+..+.+..+..++.. .+....+++. .+|++||.+.+..... .
T Consensus 151 Gv~v~~--~~~l~~F~~l~~~t~~r--~-g~p~~~~~~f~~l~~~~-~~~~~l~~a~~~~g~~va~~l~~~~~~-----~ 219 (330)
T TIGR03019 151 GLTVTV--DGDLDRFYDVYAENMRD--L-GTPVFSRRYFRLLKDVF-GEDCEVLTVRLGDGVVASAVLSFYFRD-----E 219 (330)
T ss_pred CeEEEE--CCcHHHHHHHHHHHHhc--C-CCCCCCHHHHHHHHHhc-ccCEEEEEEEeCCCCEEEEEEEEEeCC-----E
Confidence 355654 35688888877542211 1 12334555555555433 2333445556 4888888766555432 2
Q ss_pred EEEEE--eCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeEEeeeeecCC
Q 030910 85 EIGYA--ISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGLLRKYFFVKG 155 (169)
Q Consensus 85 ~i~~~--v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~~~~~~~~~g 155 (169)
...++ -+++++..+-+..|.-.++++|.++ |++...+.....|....+|=++.||+.....-.++..+|
T Consensus 220 ~~~~~~g~~~~~~~~~~~~lL~w~~i~~a~~~--G~~~fDfG~s~~~~G~~~FK~~~G~~~~~l~~~~~~~~~ 290 (330)
T TIGR03019 220 VLPYYAGGLREARDVAANDLMYWELMRRACER--GLRVFDFGRSKRGTGPFKFKKNWGFEPQPLHYEYLLYEG 290 (330)
T ss_pred EEEEeccChHHHHhhChHHHHHHHHHHHHHHC--CCcEEEcCCCCCCCccHHHHhcCCCeeccceEEEEccCC
Confidence 12223 3688888899999999999999776 999998877655667777878899998877655554433
No 105
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=96.13 E-value=0.014 Score=41.47 Aligned_cols=52 Identities=19% Similarity=0.199 Sum_probs=43.1
Q ss_pred CCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeEE
Q 030910 92 AKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGLL 147 (169)
Q Consensus 92 ~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~~ 147 (169)
..||.||+|+.+|+.+++.|..+. +-.+|.+- +....+..|.|+||+..|..
T Consensus 497 ~KfQHQG~GtLLmeEAERIAr~EH-gS~KiavI---SGVGtR~YY~klGY~LdGPY 548 (554)
T KOG2535|consen 497 TKFQHQGFGTLLMEEAERIAREEH-GSGKIAVI---SGVGTRNYYRKLGYELDGPY 548 (554)
T ss_pred hhhhhcchhhHHHHHHHHHHHHhc-CCCceEEE---eccchHHHHHhhCeeecChh
Confidence 478999999999999999999887 77777643 23567889999999998753
No 106
>PF01853 MOZ_SAS: MOZ/SAS family; InterPro: IPR002717 Moz is a monocytic leukemia Zn_finger protein and the SAS protein from Saccharomyces cerevisiae (Baker's yeast) is involved in silencing the Hmr locus. These proteins were reported to be homologous to acetyltransferases [] but this similarity is not supported by standard sequence analysis.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3TO6_A 1MJA_A 1MJ9_A 3TO7_A 3TO9_A 1MJB_A 1FY7_A 2OZU_A 2RC4_A 2OU2_A ....
Probab=96.00 E-value=0.077 Score=34.64 Aligned_cols=47 Identities=11% Similarity=0.053 Sum_probs=33.9
Q ss_pred CeEEEEEEEEeCCCCCCcEEEEE-EEeCCCccCcChHHHHHHHHHHHHHHh
Q 030910 65 DRPIGSIYVMPGIGKDERRGEIG-YAISAKYWGKGVATEAVKIAVACAFKE 114 (169)
Q Consensus 65 ~~~vG~~~~~~~~~~~~~~~~i~-~~v~~~~rg~G~g~~l~~~~~~~~~~~ 114 (169)
-.++|+.+=....... ..+. +.+.|.||++|+|+-|++..-..++.+
T Consensus 65 ~h~vGyFSKEk~s~~~---~NLsCIl~lP~yQrkGyG~~LI~fSY~LSr~e 112 (188)
T PF01853_consen 65 FHIVGYFSKEKESWDN---NNLSCILTLPPYQRKGYGRFLIDFSYELSRRE 112 (188)
T ss_dssp EEEEEEEEEESS-TT----EEESEEEE-GGGTTSSHHHHHHHHHHHHHHHT
T ss_pred ceeEEEEEEEecccCC---eeEeehhhcchhhhcchhhhhhhhHHHHhhcc
Confidence 3588888866555432 4554 778999999999999999887777555
No 107
>PF02799 NMT_C: Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain; InterPro: IPR022677 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the C-terminal region.; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 2WUU_A 1IYL_B 1NMT_B 1IYK_A ....
Probab=95.95 E-value=0.25 Score=32.40 Aligned_cols=130 Identities=15% Similarity=0.117 Sum_probs=80.4
Q ss_pred EeeCCCCChhhHHhhcCCccccccccCCCcCChHHHHHHHHHhhccCCeEEEEEE-CCeEEEEEEEEeCCC----CC-Cc
Q 030910 9 LRPFKISDVDDFMGWAGDENVTKYCRWNTFTFRDDAVAFLKEVIKSHPWYRAICV-KDRPIGSIYVMPGIG----KD-ER 82 (169)
Q Consensus 9 ir~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vG~~~~~~~~~----~~-~~ 82 (169)
+|+++++|.+.+.+++++-- ..+ ...+..+.++++-|+.-. ..-.+.+++.. +|++-.+++++..+. .+ ..
T Consensus 31 lR~m~~~Dv~~v~~Ll~~yl-~~f-~l~~~fs~eev~Hw~lp~-~~Vv~syVve~~~~~ITDf~SFY~Lpstvi~~~k~~ 107 (190)
T PF02799_consen 31 LRPMEEKDVPQVTKLLNKYL-KKF-DLAPVFSEEEVKHWFLPR-KNVVYSYVVEDPDGKITDFFSFYSLPSTVIGNPKHK 107 (190)
T ss_dssp EEE--GGGHHHHHHHHHHHH-TTS-SEEEE--HHHHHHHHS-B-TTTEEEEEEEETTSEEEEEEEEEEEEEEESSSSSSS
T ss_pred cccCchhhHHHHHHHHHHHH-Hhc-ccccccCHHHHHhhcccC-CCeEEEEEEecCCCceeeEEEEeecceeecCCCCcc
Confidence 89999999999999987532 122 224555777777776542 11225556666 568889988888753 11 11
Q ss_pred E---EEEEEEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeE-EeEEeee
Q 030910 83 R---GEIGYAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIR-EGLLRKY 150 (169)
Q Consensus 83 ~---~~i~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~-~~~~~~~ 150 (169)
. +..-+.+...-+ -++++.-++-.|++ . |++-..+-..-+|. .|.+.++|.. .|.+.-+
T Consensus 108 ~l~aAY~fY~~~~~~~----l~~Lm~DaLi~Ak~-~-gfDVFNaLd~mdN~---~fL~~lKFg~GdG~L~YY 170 (190)
T PF02799_consen 108 TLKAAYSFYYVATSTR----LKELMNDALILAKN-E-GFDVFNALDLMDNS---SFLEDLKFGPGDGNLNYY 170 (190)
T ss_dssp EEEEEEEEEEEESSSH----HHHHHHHHHHHHHH-T-TESEEEEESTTTGG---GTTTTTT-EEEEEEEEEE
T ss_pred ceeeeeeeeeeecCCC----HHHHHHHHHHHHHH-c-CCCEEehhhhccch---hhHhhCCccCCCCCeEEE
Confidence 1 444456655533 45688888888855 4 99988777777776 4789999985 4665433
No 108
>PF09390 DUF1999: Protein of unknown function (DUF1999); InterPro: IPR018987 This family contains a putative Fe-S binding reductase (Q72J89 from SWISSPROT) whose structure adopts an alpha and beta fold. ; PDB: 2D4O_A 2D4P_A.
Probab=95.86 E-value=0.22 Score=30.90 Aligned_cols=131 Identities=12% Similarity=0.048 Sum_probs=69.1
Q ss_pred EEEeeCCCCChhhHHhhc------CCccccccccC---CCcCChHHHHHHHHHhhccCCeEEEEE-ECCeEEEEEEEEeC
Q 030910 7 ITLRPFKISDVDDFMGWA------GDENVTKYCRW---NTFTFRDDAVAFLKEVIKSHPWYRAIC-VKDRPIGSIYVMPG 76 (169)
Q Consensus 7 i~ir~~~~~d~~~l~~~~------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vG~~~~~~~ 76 (169)
+.+|++.+.|++.+..+- .+|.......- ....+.-....|+.+ ....|++. ..+.+.|++.....
T Consensus 1 M~yR~f~e~D~~aL~ald~a~qr~~dP~fd~lperer~gr~~tSl~Alrfy~R----sgHSFvA~~e~~~~~GfvLAQaV 76 (161)
T PF09390_consen 1 MRYRPFTEPDFAALQALDLAAQRRTDPAFDGLPEREREGRLSTSLAALRFYER----SGHSFVAEDEGGELQGFVLAQAV 76 (161)
T ss_dssp -EEE---GGGHHHHHHC--------------------STTS---HHHHHHHHC----CS--EEEE-ETTEEEEEEEEEEE
T ss_pred CcccccCcccHHHHHHHhhhccccccccccccccccccccccCCHHHhhhhhc----cCCcEEEEccCCceeeeeehhHH
Confidence 468999999999999872 12221111100 111122223334443 34566666 58999999999988
Q ss_pred CCCCCcEEEEEEEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeE
Q 030910 77 IGKDERRGEIGYAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGL 146 (169)
Q Consensus 77 ~~~~~~~~~i~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~ 146 (169)
...++....+.-.+.++-+......-|+..+.+-|.+. ++=.|.+.+.+ ....-.+.-||...+.
T Consensus 77 WQGdrptVlV~ri~~~~~~~~~~~~GLLrAvvKSAYDa--~VYEv~l~l~p---~l~~A~~a~~~~~~~~ 141 (161)
T PF09390_consen 77 WQGDRPTVLVRRILLAPGEPEEVYEGLLRAVVKSAYDA--GVYEVHLHLDP---ELEAAARAEGFRLGGQ 141 (161)
T ss_dssp E-SSSEEEEEEEE---EESSHHHHHHHHHHHHHHHHHT--T-SEEEE---T---HHHHHHHHTT----S-
T ss_pred hcCCCceEEEEEeecCCCCcHHHHHHHHHHHHHhhhcc--ceEEEEeeCCH---HHHHHHhhcccccCCe
Confidence 77766544444334444456677778999999999777 88889988887 5556677888887764
No 109
>COG3138 AstA Arginine/ornithine N-succinyltransferase beta subunit [Amino acid transport and metabolism]
Probab=95.19 E-value=0.18 Score=35.06 Aligned_cols=66 Identities=14% Similarity=0.110 Sum_probs=38.3
Q ss_pred EEEeeCCCCChhhHHhhcCCccccccccCCCcCChHHHHHHHHHhhc--------cC-CeEEEEEE--CCeEEEEEEEEe
Q 030910 7 ITLRPFKISDVDDFMGWAGDENVTKYCRWNTFTFRDDAVAFLKEVIK--------SH-PWYRAICV--KDRPIGSIYVMP 75 (169)
Q Consensus 7 i~ir~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~-~~~~~~~~--~~~~vG~~~~~~ 75 (169)
+.+||++..|+++++++..+....-- .-+.+.+.....+..... .+ .+.+++++ .|+++|...+.-
T Consensus 2 lvvRP~~~aDl~al~~LA~~sg~G~T---sLP~de~~L~~Ri~~se~sf~~~~~~ge~~Y~fVLEDsetG~VvG~saI~a 78 (336)
T COG3138 2 LVVRPVERADLEALMELAVKTGVGLT---SLPADEATLRARIERSEKSFQGELPPGEAGYLFVLEDSETGTVVGISAIEA 78 (336)
T ss_pred cccccccccCHHHHHHHHHhcCCCcc---cCCCCHHHHHHHHHHHHHHHhcccCCCCccEEEEEEecCCceEEeEEEEEE
Confidence 46899999999999999765432111 112233333333322211 22 24555555 699999977654
No 110
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=94.92 E-value=0.18 Score=35.17 Aligned_cols=47 Identities=15% Similarity=0.102 Sum_probs=35.2
Q ss_pred CeEEEEEEEEeCCCCCCcEEEEE-EEeCCCccCcChHHHHHHHHHHHHHHh
Q 030910 65 DRPIGSIYVMPGIGKDERRGEIG-YAISAKYWGKGVATEAVKIAVACAFKE 114 (169)
Q Consensus 65 ~~~vG~~~~~~~~~~~~~~~~i~-~~v~~~~rg~G~g~~l~~~~~~~~~~~ 114 (169)
..+||+.+=....... ..+. +.+.|.||++|+|+-|++..-...+.+
T Consensus 140 ~h~vGYFSKEK~s~~~---nNLaCIltLPpyQrkGyG~~LI~fSYeLSr~E 187 (290)
T PLN03238 140 SHIVGYFSKEKVSAED---YNLACILTLPPYQRKGYGKFLISFAYELSKRE 187 (290)
T ss_pred cEEEEEeceeccccCC---CcEEEEEecChhhhccHhHhHHHHHhHHhhcc
Confidence 4688987776655432 3354 678999999999999999887776544
No 111
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=94.70 E-value=0.23 Score=35.58 Aligned_cols=56 Identities=16% Similarity=0.195 Sum_probs=42.6
Q ss_pred eEEEEEE--CCeEEEEEEEEeCCCCC----CcEEEEE-EEeCCCccCcChHHHHHHHHHHHHH
Q 030910 57 WYRAICV--KDRPIGSIYVMPGIGKD----ERRGEIG-YAISAKYWGKGVATEAVKIAVACAF 112 (169)
Q Consensus 57 ~~~~~~~--~~~~vG~~~~~~~~~~~----~~~~~i~-~~v~~~~rg~G~g~~l~~~~~~~~~ 112 (169)
|+.++.. ++++|||++..+..-.. -..++|. ++|+...|+++++--|++.+-+.+-
T Consensus 135 WHiGVRv~~s~kLVaFIsaiP~~irvrdk~vk~veINFLCVHKkLRSKRlaPvLIrEITRRvn 197 (421)
T KOG2779|consen 135 WHIGVRVKSSKKLVAFISAIPATIRVRDKVVKMVEINFLCVHKKLRSKRLAPVLIREITRRVN 197 (421)
T ss_pred eEEEEEEecCCceEEEEeccccEEEEccceeeeeeEEEEEEehhhhccccccHHHHHHHHHhh
Confidence 6666665 67999999887754211 1226675 6799999999999999999998773
No 112
>KOG4601 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.57 E-value=0.11 Score=34.90 Aligned_cols=51 Identities=12% Similarity=0.065 Sum_probs=36.2
Q ss_pred EEEEEEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHc
Q 030910 84 GEIGYAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKA 139 (169)
Q Consensus 84 ~~i~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~ 139 (169)
+.+.++|+++.|++|.|+++++.++. ++ +..-=-+.++....+.++|.++.
T Consensus 110 cILDFyVheS~QR~G~G~~lfdyMl~---kE--~vephQ~a~DrPS~kLl~Fm~kh 160 (264)
T KOG4601|consen 110 CILDFYVHESEQRSGNGFKLFDYMLK---KE--NVEPHQCAFDRPSAKLLQFMEKH 160 (264)
T ss_pred eEEEEEeehhhhhcCchHHHHHHHHH---hc--CCCchheeccChHHHHHHHHHHh
Confidence 77889999999999999999888875 33 33333344554445667777654
No 113
>PF11124 Pho86: Inorganic phosphate transporter Pho86; InterPro: IPR024297 Pho86p is an ER protein which is produced in response to phosphate starvation. It is essential for growth when phosphate levels are limiting []. Pho86p is also involved in the regulation of Pho84p, a high-affinity phosphate transporter, which is localised to the endoplasmic reticulum (ER) in low phosphate medium. When the level of phosphate increases Pho84p is transported to the vacuole. Pho86p is required for packaging of Pho84p in to COPII vesicles [].
Probab=94.38 E-value=1.2 Score=31.41 Aligned_cols=90 Identities=19% Similarity=0.286 Sum_probs=65.8
Q ss_pred CeEEEEEECCeEEEEEEEEeCCCCCCcE---EEE-EEEeCCCccCcChHHHHHHHHHHHHHH---h-----cCCceeEEE
Q 030910 56 PWYRAICVKDRPIGSIYVMPGIGKDERR---GEI-GYAISAKYWGKGVATEAVKIAVACAFK---E-----LKYLDRIEG 123 (169)
Q Consensus 56 ~~~~~~~~~~~~vG~~~~~~~~~~~~~~---~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~---~-----~~~~~~v~~ 123 (169)
....++...+.||+.+.+.+........ ..| |+.+..=|...|+-..|+++++-.+++ + ..+--.+.+
T Consensus 169 ~NT~IIvYRetPIAiisl~~~~~~St~~~~vv~ItgigvRkVy~Ksgi~e~LidWA~~Rtr~l~~ey~k~k~~~si~ll~ 248 (304)
T PF11124_consen 169 KNTHIIVYRETPIAIISLVPNKDQSTKENFVVKITGIGVRKVYVKSGIDEDLIDWAMLRTRQLYKEYLKGKKGCSIKLLV 248 (304)
T ss_pred CcceEEEEcCCceEEEEeccccccCCCceEEEEEeeeEEEEEEeecChHHHHHHHHHHHHHHHHHHhccccccceEEEEE
Confidence 3455677788999999999876543221 233 578889999999998888888655532 1 102335677
Q ss_pred EeeccCHHHHHHHHHcCCeEEe
Q 030910 124 LVFSENKASQRVMEKAGFIREG 145 (169)
Q Consensus 124 ~~~~~N~~a~~~y~~~Gf~~~~ 145 (169)
.+........+..++.||+.+.
T Consensus 249 d~YSFD~~~~k~L~~~gF~~i~ 270 (304)
T PF11124_consen 249 DVYSFDKDMKKTLKKKGFKKIS 270 (304)
T ss_pred EeeeccHHHHHHHHHCCCeeee
Confidence 8888899999999999999887
No 114
>KOG2747 consensus Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=94.38 E-value=0.063 Score=39.02 Aligned_cols=56 Identities=9% Similarity=0.110 Sum_probs=32.8
Q ss_pred CeEEEEEECCeEEEEEEEEeCCCCCCcEEEEE-EEeCCCccCcChHHHHHHHHHHHH
Q 030910 56 PWYRAICVKDRPIGSIYVMPGIGKDERRGEIG-YAISAKYWGKGVATEAVKIAVACA 111 (169)
Q Consensus 56 ~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~i~-~~v~~~~rg~G~g~~l~~~~~~~~ 111 (169)
.+.|.|.....-.|++++............+. +.+.|.||++|+|+-|++..-..-
T Consensus 233 pFlFYVlte~d~~G~VGYFSKEK~s~~~yNlaCILtLPpyQRkGYGklLIdFSYeLS 289 (396)
T KOG2747|consen 233 PFLFYVLTECDSYGCVGYFSKEKESSENYNLACILTLPPYQRKGYGKLLIDFSYELS 289 (396)
T ss_pred ceEEEEEEecCCcceeeeeccccccccccceeeeeecChhhhcccchhhhhhhhhhh
Confidence 45555554222223344444333221124464 778999999999999888765544
No 115
>KOG2696 consensus Histone acetyltransferase type b catalytic subunit [Chromatin structure and dynamics]
Probab=94.03 E-value=0.28 Score=35.39 Aligned_cols=61 Identities=15% Similarity=0.069 Sum_probs=40.0
Q ss_pred eEEEEEEEEeCCCCC-CcEEEE-EEEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccC
Q 030910 66 RPIGSIYVMPGIGKD-ERRGEI-GYAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSEN 129 (169)
Q Consensus 66 ~~vG~~~~~~~~~~~-~~~~~i-~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N 129 (169)
.++|+..++...... +..+.+ .+.+.|.||++|+|+.+++.+.+.....- . -+.++|...+
T Consensus 199 ~~~gy~tiyk~y~yid~~R~RiSQmlilpPfq~~Glgs~l~E~i~r~~~~~p-~--v~DiTVEdPs 261 (403)
T KOG2696|consen 199 AYVGYYTIYKFYEYIDRIRPRISQMLILPPFQGKGLGSQLYEAIARDYLEEP-T--VLDITVEDPS 261 (403)
T ss_pred eeeeeEEEeehhhhhhhhhhhhheeEEeccccCCchHHHHHHHHHHhhccCC-c--eeEEEecCch
Confidence 477777777765422 222444 47789999999999999999997653432 3 3444454433
No 116
>PF09924 DUF2156: Uncharacterized conserved protein (DUF2156); InterPro: IPR024320 This domain of unknown function is found in uncharacterised proteins and in Lysylphosphatidylglycerol synthetase, which catalyses the transfer of a lysyl group from L-lysyl-tRNA(Lys) to membrane-bound phosphatidylglycerol [].; PDB: 2HQY_A.
Probab=94.00 E-value=0.75 Score=32.58 Aligned_cols=111 Identities=10% Similarity=-0.076 Sum_probs=59.3
Q ss_pred EEEeeC---CCCChhhHHhhcCCccccccccCCCcCChHHHHHHHHHhhccCCeEEEEEE-CCeEEEEEEEEeCCCCCCc
Q 030910 7 ITLRPF---KISDVDDFMGWAGDENVTKYCRWNTFTFRDDAVAFLKEVIKSHPWYRAICV-KDRPIGSIYVMPGIGKDER 82 (169)
Q Consensus 7 i~ir~~---~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vG~~~~~~~~~~~~~ 82 (169)
+.+++. ++++.+.+.++..+... .............+......+...+++.. +|+++|++.+.+.... ..
T Consensus 133 ~~~~~~~~~~~~~~~el~~i~~~W~~-----~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~dgki~af~~~~~~~~~-~~ 206 (299)
T PF09924_consen 133 FEVVPIPELDPELRDELLEISDEWLK-----EKERPERGFIMGALEHFDELGLRGFVARVADGKIVAFAIGSPLGGR-DG 206 (299)
T ss_dssp -EEEE-----GGGHHHHHHHHHHHHH-----HCTHHHHHHHHHHHHTHHHHT-EEEEEEE-TTEEEEEEEEEEEE-T-TE
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHh-----cCchhHHHHHhccccchhhcCceEEEEEECCCcEEEEEEEEEccCC-cc
Confidence 556666 67777777776432110 01011122233333333334567778888 9999999999998731 11
Q ss_pred EEEEEEEe-CCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeec
Q 030910 83 RGEIGYAI-SAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFS 127 (169)
Q Consensus 83 ~~~i~~~v-~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~ 127 (169)
+.+.+.- +++ --+|+-..|+..++..+.++ |+..+.+...+
T Consensus 207 -~~~~~~k~~~~-a~~G~~e~l~~~~~~~~~~~--g~~~lnLg~ap 248 (299)
T PF09924_consen 207 -WSIDFEKADPD-APKGIYEFLNVEFAEHLKAE--GVEYLNLGFAP 248 (299)
T ss_dssp -EEEEEEEE-TT--STTHHHHHHHHHHHHS--T--T--EEE-----
T ss_pred -EEEEEEecCCC-CCCcHHHHHHHHHHHhhhhC--CceEEEccccc
Confidence 4444443 344 34599999999999998656 88888744433
No 117
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=93.99 E-value=0.58 Score=33.70 Aligned_cols=125 Identities=10% Similarity=0.052 Sum_probs=78.4
Q ss_pred EEeeCCCCChhhHHhhcCCccccccccCCCcCChHHHHHHHHHhhccCCeEEEEEE-CCeEEEEEEEEeCCCC----CC-
Q 030910 8 TLRPFKISDVDDFMGWAGDENVTKYCRWNTFTFRDDAVAFLKEVIKSHPWYRAICV-KDRPIGSIYVMPGIGK----DE- 81 (169)
Q Consensus 8 ~ir~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vG~~~~~~~~~~----~~- 81 (169)
-+|++++.|.+++.+++.+.. ..| ...+..+.++++.|+.-.- .--..++++. +|.+-++++++..+.. +.
T Consensus 262 G~R~me~kDvp~V~~Ll~~yl-~qf-~la~~f~~eev~Hwf~p~e-~VV~syVvesp~g~ITDF~SFy~lpsTv~~~~~~ 338 (421)
T KOG2779|consen 262 GLREMEEKDVPAVFRLLRNYL-KQF-ELAPVFDEEEVEHWFLPRE-NVVYSYVVESPNGKITDFCSFYSLPSTVMGNPKY 338 (421)
T ss_pred CcccccccchHHHHHHHHHHH-Hhe-ecccccCHHHhHhhccccc-ceEEEEEEECCCCcccceeeEEeccccccCCCCc
Confidence 479999999999999987532 122 1245556777776664321 1124455555 8999999999887641 11
Q ss_pred cE---EEEEEEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEE
Q 030910 82 RR---GEIGYAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIRE 144 (169)
Q Consensus 82 ~~---~~i~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~ 144 (169)
.. +.+.+.++.+-+ -.+|+.-++-.++.. |++-..+-..-.|. .|+++++|-.-
T Consensus 339 ktl~aaYlyY~v~~~t~----~~~lvnDalilak~~--gfDVFNAld~meN~---~fl~~LkFg~G 395 (421)
T KOG2779|consen 339 KTLQAAYLYYNVATSTP----LLQLVNDALILAKQK--GFDVFNALDLMENE---SFLKDLKFGPG 395 (421)
T ss_pred ceeeeeeEEEeccCCcc----HHHHHHHHHHHHHhc--CCceeehhhhhhhh---hHHHhcCcCcC
Confidence 11 334455554422 456777777777444 88866655555554 48999999763
No 118
>PLN03239 histone acetyltransferase; Provisional
Probab=93.66 E-value=0.33 Score=34.90 Aligned_cols=47 Identities=13% Similarity=-0.019 Sum_probs=34.1
Q ss_pred CeEEEEEEEEeCCCCCCcEEEEE-EEeCCCccCcChHHHHHHHHHHHHHHh
Q 030910 65 DRPIGSIYVMPGIGKDERRGEIG-YAISAKYWGKGVATEAVKIAVACAFKE 114 (169)
Q Consensus 65 ~~~vG~~~~~~~~~~~~~~~~i~-~~v~~~~rg~G~g~~l~~~~~~~~~~~ 114 (169)
-.+||+.+=....... ..+. +.+.|.||++|+|+-|++..-...+.+
T Consensus 198 ~h~vGYFSKEK~s~~~---~NLaCIltLPpyQrkGyG~lLI~fSYeLSr~E 245 (351)
T PLN03239 198 FHPVGYYSKEKYSDVG---YNLACILTFPAHQRKGYGRFLIAFSYELSKKE 245 (351)
T ss_pred eEEEEEeeecccCCCC---CceEEEEecChhhhcchhhhhHhhhhHhhhhc
Confidence 4678887665554322 3454 678999999999999998887766544
No 119
>PTZ00064 histone acetyltransferase; Provisional
Probab=93.56 E-value=0.27 Score=36.96 Aligned_cols=47 Identities=15% Similarity=0.027 Sum_probs=34.7
Q ss_pred CeEEEEEEEEeCCCCCCcEEEEE-EEeCCCccCcChHHHHHHHHHHHHHHh
Q 030910 65 DRPIGSIYVMPGIGKDERRGEIG-YAISAKYWGKGVATEAVKIAVACAFKE 114 (169)
Q Consensus 65 ~~~vG~~~~~~~~~~~~~~~~i~-~~v~~~~rg~G~g~~l~~~~~~~~~~~ 114 (169)
-.+|||.+=....... ..+. +.+.|.||++|+|+-|+...-...+.+
T Consensus 369 ~HiVGYFSKEK~S~~~---nNLACILtLPpyQRKGYGklLIdfSYeLSrrE 416 (552)
T PTZ00064 369 CHIVGYFSKEKVSLLH---YNLACILTLPCYQRKGYGKLLVDLSYKLSLKE 416 (552)
T ss_pred cEEEEEecccccCccc---CceEEEEecchhhhcchhhhhhhhhhhhhhhc
Confidence 4788887766655432 3454 678999999999999998877766444
No 120
>PRK14852 hypothetical protein; Provisional
Probab=93.11 E-value=0.78 Score=37.85 Aligned_cols=136 Identities=10% Similarity=-0.014 Sum_probs=81.2
Q ss_pred eEEEeeCC-CCChhhHHhhcCCccccccccCCCcCChHHHHHHHHHhhc-cCCeEEEEEECCeEEEEEEEEeCCCC----
Q 030910 6 EITLRPFK-ISDVDDFMGWAGDENVTKYCRWNTFTFRDDAVAFLKEVIK-SHPWYRAICVKDRPIGSIYVMPGIGK---- 79 (169)
Q Consensus 6 ~i~ir~~~-~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~vG~~~~~~~~~~---- 79 (169)
++.+|.++ ++|...+..+..+.....-.. .+.++ ...+..+.. +....|++-..++++|...+...+..
T Consensus 28 r~~~r~Aet~~e~~~~~~L~~~~Y~~~Gy~-~~~ps----~~~~~~~~~lp~t~~~i~k~~~~~l~T~t~~~ds~~~Gl~ 102 (989)
T PRK14852 28 RPAIKIAETPDEYTRAFRLVYEEYIRSGYL-KPHPS----RMYYNVWSILPATSVFIFKSYHDVLCTLTHIPDSGLFGLP 102 (989)
T ss_pred CcceeecCCHHHHHHHHHHHHHHHHHcCCC-CcCcc----cccCCccccCCcceEEEeccCCcEEEEEEEecCCcccCcC
Confidence 45566654 446777777766543322111 11111 111111111 22223443334667777776666442
Q ss_pred ---------------CCcEEEEE-EEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHH-HcCCe
Q 030910 80 ---------------DERRGEIG-YAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVME-KAGFI 142 (169)
Q Consensus 80 ---------------~~~~~~i~-~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~-~~Gf~ 142 (169)
.+..++++ +.++++.+.+-+--.+++.+..|+. .. +++.+.+.|.|.. ..||+ -+||+
T Consensus 103 ~D~lf~~eLd~lr~~Gr~v~EvtrLa~d~~~~~~~l~~~l~~~~~~y~~-~~-~~dd~~i~VnPkH---~~FY~r~l~f~ 177 (989)
T PRK14852 103 MDTLYKPEVDALRAQGRNVVEVGALATQYSRRWTNLMVFLAKAMFQYSM-MS-EVDDILVTVNPKH---VKFYTDIFLFK 177 (989)
T ss_pred HHHHHHHHHHHHHHcCCeEEeeehheechhhcccchhHHHHHHHHHHHH-Hc-CCCeEEEEECcch---HHHHHHHhCCc
Confidence 12337775 6678888877777788888888885 45 8999999887765 56999 68999
Q ss_pred EEeEEeeee
Q 030910 143 REGLLRKYF 151 (169)
Q Consensus 143 ~~~~~~~~~ 151 (169)
..|..+.+-
T Consensus 178 ~ig~~r~~p 186 (989)
T PRK14852 178 PFGEVRHYD 186 (989)
T ss_pred cccccccCC
Confidence 999865543
No 121
>PF11090 DUF2833: Protein of unknown function (DUF2833); InterPro: IPR020335 This entry contains proteins with no known function.
Probab=92.77 E-value=0.49 Score=26.70 Aligned_cols=29 Identities=17% Similarity=0.236 Sum_probs=25.1
Q ss_pred CceeEEEEeeccCHHHHHHHHHcCCeEEe
Q 030910 117 YLDRIEGLVFSENKASQRVMEKAGFIREG 145 (169)
Q Consensus 117 ~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~ 145 (169)
....++-.|...|..+++|.+++|++...
T Consensus 55 ~Y~~l~N~V~~~N~~HIRfLk~lGA~f~~ 83 (86)
T PF11090_consen 55 QYPVLWNFVWVGNKSHIRFLKSLGAVFHN 83 (86)
T ss_pred HhhheeEEEEeCCHHHHHHHHhcCcEEcc
Confidence 35679999999999999999999998543
No 122
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=92.38 E-value=0.28 Score=36.56 Aligned_cols=47 Identities=13% Similarity=0.069 Sum_probs=34.3
Q ss_pred CeEEEEEEEEeCCCCCCcEEEEE-EEeCCCccCcChHHHHHHHHHHHHHHh
Q 030910 65 DRPIGSIYVMPGIGKDERRGEIG-YAISAKYWGKGVATEAVKIAVACAFKE 114 (169)
Q Consensus 65 ~~~vG~~~~~~~~~~~~~~~~i~-~~v~~~~rg~G~g~~l~~~~~~~~~~~ 114 (169)
-.+|||.+=....... ..+. +.+.|.||++|+|+-|++..-...+.+
T Consensus 291 ~h~vGyFSKEk~s~~~---~NLaCIltlP~yQrkGyG~~LI~~SYeLSr~e 338 (450)
T PLN00104 291 CHMVGYFSKEKHSEED---YNLACILTLPPYQRKGYGKFLIAFSYELSKRE 338 (450)
T ss_pred cEEEEEecccccCcCC---CceEEEEecchhhhcchhheehhheehhhhcc
Confidence 4899987766655432 3454 678999999999999998776665443
No 123
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=92.23 E-value=0.1 Score=38.60 Aligned_cols=55 Identities=15% Similarity=0.222 Sum_probs=38.1
Q ss_pred EEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEE-----eeccCHHHHHHHHHcCCeEE
Q 030910 88 YAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGL-----VFSENKASQRVMEKAGFIRE 144 (169)
Q Consensus 88 ~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~-----~~~~N~~a~~~y~~~Gf~~~ 144 (169)
..|+|+||+.|+|...+..+.+|..+. .+..+.-. +...-.+=..|+++.||+..
T Consensus 247 vvvhpdyr~dglg~~sv~~a~ewI~eR--riPEmr~rkHlvetiaqmarynpffe~~gfkyl 306 (593)
T COG2401 247 VVVHPDYRADGLGQLSVIAALEWIIER--RIPEMRPRKHLVETIAQMARYNPFFEKVGFKYL 306 (593)
T ss_pred EEeccccccCccchhHHHHHHHHHHHh--hChhhhhhhhHHHHHHHHHhcCchhhhhceeee
Confidence 568999999999999999999999554 45544322 11111112368999999764
No 124
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=91.24 E-value=3.2 Score=27.84 Aligned_cols=65 Identities=15% Similarity=0.112 Sum_probs=44.0
Q ss_pred ChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeEEeeeeecCCEEeEeEEEE
Q 030910 98 GVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGLLRKYFFVKGKSVDIVVFS 164 (169)
Q Consensus 98 G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~~~~~~~~~g~~~d~~~~~ 164 (169)
|.|..++..+++...........+.+........-+++...+||....+ .-+.-+|.++.++.-+
T Consensus 74 GMGG~lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L~~~gf~I~~E--~lv~e~~~~YeIi~~~ 138 (205)
T PF04816_consen 74 GMGGELIIEILEAGPEKLSSAKRLILQPNTHAYELRRWLYENGFEIIDE--DLVEENGRFYEIIVAE 138 (205)
T ss_dssp EE-HHHHHHHHHHTGGGGTT--EEEEEESS-HHHHHHHHHHTTEEEEEE--EEEEETTEEEEEEEEE
T ss_pred cCCHHHHHHHHHhhHHHhccCCeEEEeCCCChHHHHHHHHHCCCEEEEe--EEEeECCEEEEEEEEE
Confidence 7788888888887755432456788877777778889999999998876 3344566666655543
No 125
>PF04768 DUF619: Protein of unknown function (DUF619); InterPro: IPR006855 This region of unknown function is found at the C terminus of Neurospora crassa acetylglutamate synthase (2.7.2.8 from EC). It is also found C-terminal to the amino acid kinase region in some fungal acetylglutamate kinase enzymes (IPR001048 from INTERPRO). These enzymes play a role in arginine biosynthesis.; PDB: 3S6K_A 4AB7_F 3ZZF_B 3ZZI_D 3ZZH_A 3ZZG_A 3S6G_Y 3S6H_A 3S7Y_A.
Probab=90.49 E-value=3.4 Score=26.83 Aligned_cols=108 Identities=18% Similarity=0.195 Sum_probs=58.8
Q ss_pred ChhhHHhhcCCccccccccCCCcCChHHHHHHHHHhhccCCeEEEEEECCeEEEEEEEEeCCC-CCCcEEEEE-EEeCCC
Q 030910 16 DVDDFMGWAGDENVTKYCRWNTFTFRDDAVAFLKEVIKSHPWYRAICVKDRPIGSIYVMPGIG-KDERRGEIG-YAISAK 93 (169)
Q Consensus 16 d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~-~~~~~~~i~-~~v~~~ 93 (169)
|.+.|.+++.+.. .. ......|+.+... ..+.++.++..-|.+.+.+..+ .....+.+. +.|.+.
T Consensus 33 d~~kL~~ll~~sf-------~~---~~~v~~yl~~l~~---~~~~iy~d~~y~~~AIVt~e~~~~~~~v~yLdKFav~~~ 99 (170)
T PF04768_consen 33 DLDKLRALLERSF-------GG---KLDVDHYLDRLNN---RLFKIYVDEDYEGAAIVTPEGPDSNGPVPYLDKFAVSKS 99 (170)
T ss_dssp -HHHHHHHHHHHS-------TS---SSBHTTHHHHHHT---S-SEEEEETTSSEEEEEEEE-SCTCTSEEEEEEEEE-HH
T ss_pred CHHHHHHHHHhcc-------cc---cccHHHHHHHhhc---cceEEEEeCCceEEEEEEecCCCCCCCCeEEEEEEecch
Confidence 7777887765432 11 2223344544422 2334444555666777765321 222236675 889999
Q ss_pred ccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHH-HcCCeE
Q 030910 94 YWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVME-KAGFIR 143 (169)
Q Consensus 94 ~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~-~~Gf~~ 143 (169)
.||.|++--+.+.+. +.. +.+...+.++|+.-.=+++ .-|+..
T Consensus 100 ~~g~gv~D~vf~~i~----~d~---p~L~Wrsr~~n~~~~Wyf~rs~G~~~ 143 (170)
T PF04768_consen 100 AQGSGVADNVFNAIR----KDF---PKLFWRSREDNPNNKWYFERSDGSFK 143 (170)
T ss_dssp HHHTTHHHHHHHHHH----HH----SSEEEEEETT-TTHHHHHHH-SEEEE
T ss_pred hhhcCHHHHHHHHHH----Hhc---cceEEEecCCCCcccEEEEeeEEEEE
Confidence 999999999888875 333 3477778888764332333 344433
No 126
>PF13444 Acetyltransf_5: Acetyltransferase (GNAT) domain
Probab=89.50 E-value=2.2 Score=24.84 Aligned_cols=51 Identities=16% Similarity=0.176 Sum_probs=33.8
Q ss_pred cCCeEEEEEECCe-EEEEEEEEeCCCCC--------------------CcEEEEE-EEeCCCccCcChHHHHH
Q 030910 54 SHPWYRAICVKDR-PIGSIYVMPGIGKD--------------------ERRGEIG-YAISAKYWGKGVATEAV 104 (169)
Q Consensus 54 ~~~~~~~~~~~~~-~vG~~~~~~~~~~~--------------------~~~~~i~-~~v~~~~rg~G~g~~l~ 104 (169)
+....+++..++. +||.+-+....... ...+|++ ++|+|+||+......|.
T Consensus 28 ~~~~h~lv~~~~~~~VGt~Rl~~~~~~~~~~~~~~~~~f~l~~~~~~~~~~~EisRl~V~~~~R~~~~~~~L~ 100 (101)
T PF13444_consen 28 EHSVHLLVRDKNTEVVGTVRLILPSPAGPLEGFYSESEFDLDPLLPLPRRVAEISRLCVHPEYRRRKVLLLLW 100 (101)
T ss_pred CCccEEEEEECCCCEEEEEEeeccccccccccCCchhhcCcchhhccCCcEEEeehheECHhHCCChHHHHHh
Confidence 3445666666544 99998887655421 2236776 78999999987666553
No 127
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=86.97 E-value=10 Score=27.99 Aligned_cols=132 Identities=13% Similarity=0.097 Sum_probs=74.5
Q ss_pred eEEEeeC-----CCCChhhHHhhcCCccccccccCCCcCChHHHHHHHHHhhccCCeEEEEEECCeEEEEEEEEeCCCCC
Q 030910 6 EITLRPF-----KISDVDDFMGWAGDENVTKYCRWNTFTFRDDAVAFLKEVIKSHPWYRAICVKDRPIGSIYVMPGIGKD 80 (169)
Q Consensus 6 ~i~ir~~-----~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~ 80 (169)
.+.++.+ ++++++.++.++.+.....+ ..+..+.+-.....+. ..+....+++..+|++||+..+...+..
T Consensus 199 Gi~~~~l~G~~i~~~~~~~f~~~Y~~Ty~k~~--~~~yLt~~FF~~l~~~-m~~~~~l~~A~~~g~~Va~aL~l~~~~~- 274 (370)
T PF04339_consen 199 GIRIRTLTGDEITDEDWDRFYRLYQNTYAKRW--GRPYLTREFFEQLAET-MPEQVVLVVARRDGQPVAFALCLRGDDT- 274 (370)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHHHHhhC--CChhhcHHHHHHHHHh-CcCCEEEEEEEECCeEEEEEEEEEeCCE-
Confidence 3555554 44556677777765433332 1344454444444433 2222233344449999999998887542
Q ss_pred CcEEEEE--EEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeEEeeeeecC
Q 030910 81 ERRGEIG--YAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGLLRKYFFVK 154 (169)
Q Consensus 81 ~~~~~i~--~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~~~~~~~~~ 154 (169)
-.| +....+..+.-+ ..+.-+.++||.++ |++.+...+.-.++ ...||.++.+..-+...+
T Consensus 275 ----LyGRYwG~~~~~~~LHF-e~cYYq~Ie~aI~~--Gl~~f~~GaqGEHK------~~RGf~P~~t~S~H~~~~ 337 (370)
T PF04339_consen 275 ----LYGRYWGCDEEIPFLHF-ELCYYQGIEYAIEH--GLRRFEPGAQGEHK------IARGFEPVPTYSAHWIAD 337 (370)
T ss_pred ----EEEeeecccccccCcch-HHHHHHHHHHHHHc--CCCEEECCcchhHH------HHcCCccccceeeeeeCC
Confidence 122 233444443332 23355788899777 99988866443222 367999998877665444
No 128
>cd04266 DUF619-NAGS-FABP DUF619 domain of N-acetylglutamate Synthase of the fungal arginine-biosynthetic pathway. DUF619-NAGS-FABP: This family includes the DUF619 domain of N-acetylglutamate synthase (NAGS) of the fungal arginine-biosynthetic pathway (FABP). This NAGS (also known as arginine-requiring protein 2 or ARG2) consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. NAGS catalyzes the formation of NAG from acetylcoenzyme A and L-glutamate. The DUF619 domain, yet to be characterized, is predicted to function in NAGS association in fungi.
Probab=85.61 E-value=5.7 Score=23.67 Aligned_cols=67 Identities=12% Similarity=0.094 Sum_probs=43.6
Q ss_pred EEEEEECCeEEEEEEEEeCCCC---CCcEEEEE-EEeCCCccC-cChHHHHHHHHHHHHHHhcCCcee-EEEEeeccCHH
Q 030910 58 YRAICVKDRPIGSIYVMPGIGK---DERRGEIG-YAISAKYWG-KGVATEAVKIAVACAFKELKYLDR-IEGLVFSENKA 131 (169)
Q Consensus 58 ~~~~~~~~~~vG~~~~~~~~~~---~~~~~~i~-~~v~~~~rg-~G~g~~l~~~~~~~~~~~~~~~~~-v~~~~~~~N~~ 131 (169)
.+.++.++..-|.+.+....+. ....+.+. +.|.+..|| .|++--+.+.+.+ . .++ +...+.++|+.
T Consensus 11 ~~~~y~~~~y~~~AIvt~e~~~~~~~~~v~yLdKFav~~~~~gl~gv~D~vf~~m~~----~---fp~~L~Wrsr~~n~~ 83 (108)
T cd04266 11 LATVIIAGDYEGAAILTWEGPDGSTPEKIAYLDKFAVLPKAQGSDGIADILFNAMLD----G---FPNELIWRSRKDNPV 83 (108)
T ss_pred ccEEEEeCCCcEEEEEecCCCCccCCCCceEEEEEEEccccccccchHHHHHHHHHH----c---CCCceEEEeCCCCcc
Confidence 3344456666677777654321 12225664 889999997 8999998887775 2 233 77778877764
No 129
>PF02474 NodA: Nodulation protein A (NodA); InterPro: IPR003484 Rhizobial nodulation (Nod) factors are signalling molecules secreted by root-nodulating rhizobia in response to flavanoids excreted by the host plant. They induce various symbiotic responses on the roots of the leguminous host plant at low concentrations, and are required for successful infection. Rhizobial Nod factors are lipo-chitooligosaccharides carrying various substituents which are important determinants of host specificity []. NodA is an N-acyl transferase which specifies the transfer of an acyl chain to the oligosaccharide backbone of Nod factor. Allelic variation of the nodA gene can contribute to the determination of host range [].; GO: 0016746 transferase activity, transferring acyl groups
Probab=85.00 E-value=3.5 Score=26.74 Aligned_cols=51 Identities=22% Similarity=0.291 Sum_probs=38.2
Q ss_pred EEEE-EEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcC
Q 030910 84 GEIG-YAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAG 140 (169)
Q Consensus 84 ~~i~-~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~G 140 (169)
+++| +.|.|+.+|.||+..+ ..+...+ +++ ++.--..+|. .+.++.+++++
T Consensus 86 aElGLygVRpDLEGlGi~hs~-r~m~PvL-q~L-gVPF~FGtVR---~al~~Hv~R~~ 137 (196)
T PF02474_consen 86 AELGLYGVRPDLEGLGISHSM-RVMYPVL-QEL-GVPFGFGTVR---HALRNHVERLC 137 (196)
T ss_pred EEEEEEEeeccccccccchhh-hhhhhHH-Hhc-CCCeecccch---HHHHHHHHHHh
Confidence 8888 5589999999999876 4555554 777 8887777775 45667777765
No 130
>COG5027 SAS2 Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=82.73 E-value=0.72 Score=33.11 Aligned_cols=39 Identities=10% Similarity=0.118 Sum_probs=27.0
Q ss_pred eEEEEEEEEeCCCCCCcEEEEE-EEeCCCccCcChHHHHHHHH
Q 030910 66 RPIGSIYVMPGIGKDERRGEIG-YAISAKYWGKGVATEAVKIA 107 (169)
Q Consensus 66 ~~vG~~~~~~~~~~~~~~~~i~-~~v~~~~rg~G~g~~l~~~~ 107 (169)
.+||+.+=...+... ..+. +.+.|.||++|+|+-|++..
T Consensus 248 h~vGyFSKEK~S~~~---yNLaCILtLP~yQRrGYG~lLIdFS 287 (395)
T COG5027 248 HLVGYFSKEKESEQD---YNLACILTLPPYQRRGYGKLLIDFS 287 (395)
T ss_pred eeeeeechhhccccc---CceEEEEecChhHhcccceEeeeee
Confidence 477776655554433 4454 66799999999999877644
No 131
>PRK15312 antimicrobial resistance protein Mig-14; Provisional
Probab=82.57 E-value=3.6 Score=29.08 Aligned_cols=94 Identities=9% Similarity=0.072 Sum_probs=55.6
Q ss_pred EEeeCCCCChhhHHhhcCCccccccccCCCcC--ChHHHHHHHHHhhccCCeEEEEEECCeEEEEEEEEeCCCCCCcEEE
Q 030910 8 TLRPFKISDVDDFMGWAGDENVTKYCRWNTFT--FRDDAVAFLKEVIKSHPWYRAICVKDRPIGSIYVMPGIGKDERRGE 85 (169)
Q Consensus 8 ~ir~~~~~d~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~ 85 (169)
.+|++..=-.+++.+++.+--...|. ...+ ..+...+++..... --...++..+|+|+|+-.+...+.......+
T Consensus 156 ~v~~is~fS~~Ela~iY~~Lf~~Rwg--~~~~~~~~~~l~e~f~~Lr~-l~fG~VLfl~~~PcA~qlv~k~eSp~wi~~D 232 (298)
T PRK15312 156 SVKSVADCSSDELTHIFIELFRSRFG--NTLSCYPADNLANFFSQLRH-LLFGHILYIEGIPCAFDIVLKSESQMNVYFD 232 (298)
T ss_pred EEEEhHHCCHHHHHHHHHHHHHHHhC--CCCCcccHHHHHHHHHHhHH-hheeeEEEECCcceEEEEEEEecCCCcEEEe
Confidence 35555544455555555443223332 2222 56667777765532 3355566779999999999887765443222
Q ss_pred E-EEEeCCCccCcChHHHHH
Q 030910 86 I-GYAISAKYWGKGVATEAV 104 (169)
Q Consensus 86 i-~~~v~~~~rg~G~g~~l~ 104 (169)
. .-.++|++..--.|+-++
T Consensus 233 ~iNgG~Dpe~~~~spGSIL~ 252 (298)
T PRK15312 233 VPNGAVKNECMPLSPGSILM 252 (298)
T ss_pred cccCccCcccccCCCccEEE
Confidence 2 245889988887777553
No 132
>PHA02769 hypothetical protein; Provisional
Probab=82.35 E-value=1.7 Score=25.85 Aligned_cols=46 Identities=24% Similarity=0.207 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHH--HhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeEEe
Q 030910 100 ATEAVKIAVACAF--KELKYLDRIEGLVFSENKASQRVMEKAGFIREGLLR 148 (169)
Q Consensus 100 g~~l~~~~~~~~~--~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~~~ 148 (169)
|-.+++.+...+. +.. |+.-++.--.|+. |.++|.+.||+.+|...
T Consensus 94 gd~lvnfl~~l~~k~~~d-g~evlwtlgfpdh--snaly~kagfk~vg~ts 141 (154)
T PHA02769 94 GDHLVNFLNDLAEKLKKD-GFEVLWTLGFPDH--SNALYKKAGFKLVGQTS 141 (154)
T ss_pred hHHHHHHHHHHHHHHhcC-CeEEEEEecCCCc--chhHHhhhhhhHhcccc
Confidence 4445555444331 233 6666665555554 66799999999988654
No 133
>PF07395 Mig-14: Mig-14; InterPro: IPR009977 This family contains a number of bacterial mig-14 proteins (approximately 270 residues long). In Salmonella, mig-14 contributes to resistance to antimicrobial peptides, although the mechanism is not fully understood [].
Probab=81.68 E-value=3.8 Score=28.56 Aligned_cols=103 Identities=8% Similarity=-0.025 Sum_probs=60.2
Q ss_pred EEeeCCCCChhhHHhhcCCccccccccCCCcCChHHHHHHHHHhhccCCeEEEEEECCeEEEEEEEEeCCCCCCcEEEE-
Q 030910 8 TLRPFKISDVDDFMGWAGDENVTKYCRWNTFTFRDDAVAFLKEVIKSHPWYRAICVKDRPIGSIYVMPGIGKDERRGEI- 86 (169)
Q Consensus 8 ~ir~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~i- 86 (169)
.++++..=..+++.+++.+--...|. ......+...+++..... --...++..+|+||++-.+...+.......+.
T Consensus 128 ~v~~v~~~S~~Ela~iY~~Lf~~Rwg--~~~~~~~~l~e~f~~Lr~-~~fG~vL~l~~~P~Aiqlv~k~es~~wv~~D~i 204 (264)
T PF07395_consen 128 SVRPVSEFSPEELADIYIDLFQKRWG--FRCYGKEHLAEFFSELRH-MIFGSVLFLNGQPCAIQLVYKVESPKWVYFDYI 204 (264)
T ss_pred EEEEHHHCCHHHHHHHHHHHHHHHhC--CCCCcHHHHHHHHHHhHH-hheeeEEEECCcceEEEEEEEecCCCeEEEecc
Confidence 35555555555555554433223332 233345566666665432 34555677799999999998877654422221
Q ss_pred EEEeCCCccCcChHHHHH----HHHHHHHHH
Q 030910 87 GYAISAKYWGKGVATEAV----KIAVACAFK 113 (169)
Q Consensus 87 ~~~v~~~~rg~G~g~~l~----~~~~~~~~~ 113 (169)
.-.++|+++.--.|+-++ +.+.++|.+
T Consensus 205 NgG~Dp~~~~~SpGSiL~w~Ni~~A~~~~~~ 235 (264)
T PF07395_consen 205 NGGYDPECRDFSPGSILMWLNIQDAWEYCRA 235 (264)
T ss_pred cCccCcccccCCCccEEEEeeHHHHHHHHHH
Confidence 244799999988888654 455555533
No 134
>COG5092 NMT1 N-myristoyl transferase [Lipid metabolism]
Probab=80.01 E-value=8.3 Score=27.66 Aligned_cols=56 Identities=16% Similarity=0.156 Sum_probs=41.1
Q ss_pred eEEEEEE--CCeEEEEEEEEeCCCCC----CcEEEEE-EEeCCCccCcChHHHHHHHHHHHHH
Q 030910 57 WYRAICV--KDRPIGSIYVMPGIGKD----ERRGEIG-YAISAKYWGKGVATEAVKIAVACAF 112 (169)
Q Consensus 57 ~~~~~~~--~~~~vG~~~~~~~~~~~----~~~~~i~-~~v~~~~rg~G~g~~l~~~~~~~~~ 112 (169)
++.++.. ..++||++...+..-.. ....++. ++|+.+.|++.+.--|++.+-+.+-
T Consensus 133 whigvRvk~t~klVaFIsa~p~~v~vRgK~~~~~evNFLCihk~lRsKRltPvLIkEiTRR~n 195 (451)
T COG5092 133 WHIGVRVKGTQKLVAFISAKPHLVSVRGKRSSVLEVNFLCIHKELRSKRLTPVLIKEITRRAN 195 (451)
T ss_pred eEEEEEEcccceeEEEEecceeEEEEcccccccceEEEEEEehhhhhCccchHHHHHHHHhhh
Confidence 5555555 45999999887754211 1126665 6799999999999999999988873
No 135
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=78.69 E-value=18 Score=24.65 Aligned_cols=66 Identities=12% Similarity=0.095 Sum_probs=44.1
Q ss_pred ChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeEEeeeeecCCEEeEeEEEEe
Q 030910 98 GVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGLLRKYFFVKGKSVDIVVFST 165 (169)
Q Consensus 98 G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~~~~~~~~~g~~~d~~~~~~ 165 (169)
|.|..++..+++...+.++++.++.+.....-..-+.+...++|....+. -+.-++..+...+-+.
T Consensus 93 GMGG~lI~~ILee~~~~l~~~~rlILQPn~~~~~LR~~L~~~~~~I~~E~--ileE~~kiYEIlv~e~ 158 (226)
T COG2384 93 GMGGTLIREILEEGKEKLKGVERLILQPNIHTYELREWLSANSYEIKAET--ILEEDGKIYEILVVEK 158 (226)
T ss_pred CCcHHHHHHHHHHhhhhhcCcceEEECCCCCHHHHHHHHHhCCceeeeee--eecccCeEEEEEEEec
Confidence 78888888888888666656667777665555566788899999987652 2222355555444443
No 136
>COG2231 Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]
Probab=77.86 E-value=3.2 Score=27.69 Aligned_cols=40 Identities=28% Similarity=0.433 Sum_probs=32.6
Q ss_pred cChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEe
Q 030910 97 KGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREG 145 (169)
Q Consensus 97 ~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~ 145 (169)
+|+|.+-...++-||+..- +..-..-+.+++.++|+..+.
T Consensus 121 KGIG~ETaDsILlYa~~rp---------~FVvD~Yt~R~l~rlg~i~~k 160 (215)
T COG2231 121 KGIGKETADSILLYALDRP---------VFVVDKYTRRLLSRLGGIEEK 160 (215)
T ss_pred CCcchhhHHHHHHHHhcCc---------ccchhHHHHHHHHHhcccccc
Confidence 6999999999999997652 333456789999999998774
No 137
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=77.76 E-value=2.9 Score=24.72 Aligned_cols=19 Identities=21% Similarity=0.125 Sum_probs=15.7
Q ss_pred HHHHHHHHHcCCeEEeEEe
Q 030910 130 KASQRVMEKAGFIREGLLR 148 (169)
Q Consensus 130 ~~a~~~y~~~Gf~~~~~~~ 148 (169)
.+|++||+.+||+......
T Consensus 13 ~~s~~FY~~LGf~~~~~~~ 31 (113)
T cd08356 13 AESKQFYQALGFELEWEND 31 (113)
T ss_pred HHHHHHHHHhCCeeEecCC
Confidence 4889999999999876543
No 138
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=77.32 E-value=4.7 Score=24.06 Aligned_cols=17 Identities=18% Similarity=0.120 Sum_probs=14.3
Q ss_pred HHHHHHHHHcCCeEEeE
Q 030910 130 KASQRVMEKAGFIREGL 146 (169)
Q Consensus 130 ~~a~~~y~~~Gf~~~~~ 146 (169)
.+|++||+.+||+....
T Consensus 12 ~~s~~FY~~lGf~~~~~ 28 (124)
T cd09012 12 EKSTAFYTALGFEFNPQ 28 (124)
T ss_pred HHHHHHHHHCCCEEccc
Confidence 58999999999987643
No 139
>COG2935 Putative arginyl-tRNA:protein arginylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=76.18 E-value=23 Score=24.54 Aligned_cols=61 Identities=8% Similarity=-0.092 Sum_probs=47.1
Q ss_pred CCeEEEEEEEEeCCCCCCcEEEEEEEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccC
Q 030910 64 KDRPIGSIYVMPGIGKDERRGEIGYAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSEN 129 (169)
Q Consensus 64 ~~~~vG~~~~~~~~~~~~~~~~i~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N 129 (169)
.|++|+++.....++.- .-+..+-+|++...++|+-++-.=+.+|.+ . +.+.+++.=.-.+
T Consensus 159 ~G~LvAVavtDvL~dGl---SsVY~FydPd~s~~SLGt~~iL~~I~~aq~-~-~l~yvYLGYwI~~ 219 (253)
T COG2935 159 EGKLVAVAVTDVLPDGL---SSVYTFYDPDMSKRSLGTLSILDQIAIAQR-L-GLPYVYLGYWIKG 219 (253)
T ss_pred CCcEEEEEeeecccCcc---eeEEEEeCCChhhhcchHHHHHHHHHHHHH-h-CCCeEEEEEEECC
Confidence 78999988877766542 334456799999999999999888899844 4 9999998665543
No 140
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=74.71 E-value=5.1 Score=23.71 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=17.5
Q ss_pred eEEEEeeccCHHHHHHHHHcCCeEEe
Q 030910 120 RIEGLVFSENKASQRVMEKAGFIREG 145 (169)
Q Consensus 120 ~v~~~~~~~N~~a~~~y~~~Gf~~~~ 145 (169)
.|.+.|. +=.+|++||+++||+...
T Consensus 3 ~i~l~V~-D~~~a~~FY~~LGf~~~~ 27 (122)
T cd07235 3 AVGIVVA-DMAKSLDFYRRLGFDFPE 27 (122)
T ss_pred eEEEEec-cHHHHHHHHHHhCceecC
Confidence 3455443 335899999999998753
No 141
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=73.48 E-value=5.6 Score=23.59 Aligned_cols=19 Identities=16% Similarity=0.134 Sum_probs=15.5
Q ss_pred HHHHHHHHHcCCeEEeEEe
Q 030910 130 KASQRVMEKAGFIREGLLR 148 (169)
Q Consensus 130 ~~a~~~y~~~Gf~~~~~~~ 148 (169)
.+|++||+++||+......
T Consensus 14 ~~s~~FY~~lG~~~~~~~~ 32 (120)
T cd08350 14 DATEAFYARLGFSVGYRQA 32 (120)
T ss_pred HHHHHHHHHcCCEEEecCC
Confidence 4899999999999876544
No 142
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=71.70 E-value=5.9 Score=24.27 Aligned_cols=29 Identities=21% Similarity=0.187 Sum_probs=21.1
Q ss_pred CceeEEEEeeccCHHHHHHHHHcCCeEEeE
Q 030910 117 YLDRIEGLVFSENKASQRVMEKAGFIREGL 146 (169)
Q Consensus 117 ~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~ 146 (169)
+++.|.+.|.. =.+|++||+++||+....
T Consensus 3 ~i~Hi~i~v~D-l~~s~~FY~~LG~~~~~~ 31 (142)
T cd08353 3 RMDNVGIVVRD-LEAAIAFFLELGLELEGR 31 (142)
T ss_pred eeeeEEEEeCC-HHHHHHHHHHcCCEEccc
Confidence 45667666653 358899999999987544
No 143
>COG5092 NMT1 N-myristoyl transferase [Lipid metabolism]
Probab=71.31 E-value=10 Score=27.26 Aligned_cols=130 Identities=14% Similarity=0.009 Sum_probs=67.2
Q ss_pred EEEeeCCCCChhhHHhhcCCccccccccCCCcCChHHHHHHHHHhhc--cCC--eEEEEEE-CCeEEEEEEEEeCCCC--
Q 030910 7 ITLRPFKISDVDDFMGWAGDENVTKYCRWNTFTFRDDAVAFLKEVIK--SHP--WYRAICV-KDRPIGSIYVMPGIGK-- 79 (169)
Q Consensus 7 i~ir~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~-~~~~vG~~~~~~~~~~-- 79 (169)
--+|+++..|.+++.+++.... ..+. .....+.+++..++.-.-+ +.. +.+++.. +|.+-++..++..+..
T Consensus 259 ~GlR~~e~kD~~~v~~L~~~y~-~Rfe-l~~~f~~Eei~h~F~~~~~v~~~~v~~syvVe~p~gkItdFfsFyslp~t~i 336 (451)
T COG5092 259 EGLRLAEEKDMEDVARLYLEYS-RRFE-LYEEFRFEEIVHTFRPVKNVVDKQVTYSYVVEEPNGKITDFFSFYSLPFTTI 336 (451)
T ss_pred cccchhhhhCHHHHHHHHHHHH-HHHH-HHHHHhHHHHHhhcccccccccCceEEEEEEeCCCCccccceEEEeccceee
Confidence 4578999999999999886432 1110 0112234444444432221 111 3334444 8999999988877621
Q ss_pred --C-C---cEEEEEEEeCCCccCcChHH-----------HHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCe
Q 030910 80 --D-E---RRGEIGYAISAKYWGKGVAT-----------EAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFI 142 (169)
Q Consensus 80 --~-~---~~~~i~~~v~~~~rg~G~g~-----------~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~ 142 (169)
. . ..+.+.++-. +.+-+.+.. +++.-++-.|+.. +++-.-+-+.-+|. -|...++|-
T Consensus 337 ~n~kykdiq~gYLYYya~-d~~~kd~~~~a~~a~~~r~~e~v~Da~ilak~~--~~DVFNalt~~dN~---lFL~dLkFg 410 (451)
T COG5092 337 ENKKYKDIQGGYLYYYAG-DDQFKDFDPKATKALKTRVAEMVGDAMILAKVE--GCDVFNALTMMDNS---LFLADLKFG 410 (451)
T ss_pred cCccccccceeEEEEEcc-CccccccChHHHHHHHHHHHHHHHHHHHHHHHc--CCchhhhhhhccch---hHHHhcCcc
Confidence 1 1 1133333322 223333333 2333344444333 66655555555664 378888887
Q ss_pred EE
Q 030910 143 RE 144 (169)
Q Consensus 143 ~~ 144 (169)
.-
T Consensus 411 ~G 412 (451)
T COG5092 411 CG 412 (451)
T ss_pred CC
Confidence 53
No 144
>PF02100 ODC_AZ: Ornithine decarboxylase antizyme; InterPro: IPR002993 Ornithine decarboxylase antizyme (ODC-AZ) [] binds to, and destabilises, ornithine decarboxylase (ODC), a key enzyme in polyamine synthesis. ODC is then rapidly degraded. The expression of ODC-AZ requires programmed, ribosomal frameshifting which is modulated according to the cellular concentration of polyamines. High levels of polyamines induce a +1 ribosomal frameshift in the translation of mRNA for the antizyme leading to the expression of a full-length protein. At least two forms of ODC-AZ exist in mammals [] and the protein has been found in Drosophila (protein Gutfeeling).; GO: 0004857 enzyme inhibitor activity, 0008073 ornithine decarboxylase inhibitor activity; PDB: 1ZO0_A.
Probab=71.23 E-value=19 Score=21.42 Aligned_cols=56 Identities=16% Similarity=0.100 Sum_probs=27.2
Q ss_pred EeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHH---HHHHHHcCCeEEeE
Q 030910 89 AISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKAS---QRVMEKAGFIREGL 146 (169)
Q Consensus 89 ~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a---~~~y~~~Gf~~~~~ 146 (169)
.+.+...++| .|+.+-.++++|-+.+ ++..|.+.+..+.... .+-+.=+||+.+..
T Consensus 29 ~ip~~~~~~~-~K~~lvaLLElAee~L-~c~~vvic~~k~~~d~~~Llr~l~~vGF~lv~~ 87 (108)
T PF02100_consen 29 FIPSSALGQG-SKESLVALLELAEEKL-GCSHVVICLDKNRPDRASLLRTLMWVGFELVTP 87 (108)
T ss_dssp E-SS---SS---SHHHHHHHHHHHHHH-----EEEEE---SS-HHHHHHHHTTT--EEE--
T ss_pred EECCcccccc-cHHHHHHHHHHhcCcC-CCCEEEEEEECCchhHHHhhhhcEeeccEecCC
Confidence 3455544444 7788888899996678 9999999888776543 44455677877655
No 145
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=69.30 E-value=14 Score=22.79 Aligned_cols=61 Identities=20% Similarity=0.207 Sum_probs=41.1
Q ss_pred ccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeEEeeeeecCCEEeEe
Q 030910 94 YWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGLLRKYFFVKGKSVDI 160 (169)
Q Consensus 94 ~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~~~~~~~~~g~~~d~ 160 (169)
-||-|+|+++++.+-+.+ . +.+.+...-+|.-|-.-..|.|-..-.+-++....+-...|.
T Consensus 7 GQGGGiG~~iv~~lr~~~-~-----~~~eI~AlGTNa~AT~~MlKaGA~~gATGENaIv~n~~~aDi 67 (131)
T PF12953_consen 7 GQGGGIGKQIVEKLRKEL-P-----EEVEIIALGTNAIATSAMLKAGANEGATGENAIVVNARKADI 67 (131)
T ss_pred CCCChhHHHHHHHHHHhC-C-----CCcEEEEEehhHHHHHHHHHcCCCCcccccchheeccCCCCE
Confidence 478899999887776543 1 236666777898888899999987765554544443333333
No 146
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=68.62 E-value=63 Score=27.96 Aligned_cols=58 Identities=14% Similarity=-0.044 Sum_probs=44.7
Q ss_pred CCeEEEEEEEEeCCCCCCcEEEEEEEe-CCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeec
Q 030910 64 KDRPIGSIYVMPGIGKDERRGEIGYAI-SAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFS 127 (169)
Q Consensus 64 ~~~~vG~~~~~~~~~~~~~~~~i~~~v-~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~ 127 (169)
+|+++|++.+.+.... . +.+.++- +|+ --.|+.-.|+..++.+++++ |++.+.+...+
T Consensus 429 ~G~i~af~s~~p~~~~--g-~slDLMRr~pd-apnGvmE~L~~~l~~~~k~~--G~~~~sLg~AP 487 (1094)
T PRK02983 429 DGQVVALLSFVPWGRR--G-LSLDLMRRSPD-APNGVIELMVAELALEAESL--GITRISLNFAV 487 (1094)
T ss_pred CCeEEEEEEEeeeCCC--C-EEEEecccCCC-CCCCHHHHHHHHHHHHHHHc--CCCEEEechhh
Confidence 7999999999996432 1 5555544 455 36799999999999999666 99999987766
No 147
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=67.09 E-value=15 Score=21.10 Aligned_cols=34 Identities=12% Similarity=0.315 Sum_probs=22.9
Q ss_pred CcCChHHHHHHHHHhhccCCeEEEEEECCeEEEE
Q 030910 37 TFTFRDDAVAFLKEVIKSHPWYRAICVKDRPIGS 70 (169)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~ 70 (169)
.++..+.-++|.++...++-++=++..+|++||=
T Consensus 47 ~p~~~~~~~~~a~~I~ede~fYPlV~i~~eiV~E 80 (93)
T PF07315_consen 47 NPPENDHDQQFAERILEDELFYPLVVINDEIVAE 80 (93)
T ss_dssp T----HHHHHHHHHHHTTSS-SSEEEETTEEEEE
T ss_pred CCCccHHHHHHHHHHHhcccccceEEECCEEEec
Confidence 3334467778888888877777778889999984
No 148
>COG2348 Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]
Probab=66.55 E-value=55 Score=24.83 Aligned_cols=87 Identities=9% Similarity=-0.017 Sum_probs=54.4
Q ss_pred eEEEEEECCeEEEEEEEEeCCCCCCcEEEEEEEe-CC--CccCcChHHHHHHHHHHHHHHhcCCceeEEEEee-------
Q 030910 57 WYRAICVKDRPIGSIYVMPGIGKDERRGEIGYAI-SA--KYWGKGVATEAVKIAVACAFKELKYLDRIEGLVF------- 126 (169)
Q Consensus 57 ~~~~~~~~~~~vG~~~~~~~~~~~~~~~~i~~~v-~~--~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~------- 126 (169)
..+.|..+++.++.+++........ ....+.- .| +|-++.+-...++.+.+++.+. .+ +.+.++
T Consensus 41 ~~~~v~~~~~~v~aa~ll~k~~~~~--~~~~~~prGPv~dy~~~~l~~~~~k~l~~y~k~~--~~--l~i~idP~l~~~~ 114 (418)
T COG2348 41 HLIGVKKDGNAVIAASLLSKKLPLG--FYTYYIPRGPVMDYSNQELLDYFIKELKKYAKSK--RA--LFIKIDPYLVYQQ 114 (418)
T ss_pred eeEEEEecCceeeeeeeeeeeccCC--ceEEEecCCCcccccchHHHHHHHHHHHHHHhhc--cc--eEEEeccchhhhc
Confidence 3455666666655555544432221 2233333 45 7888888888888888888554 22 222232
Q ss_pred ----------ccCHHHHHHHHHcCCeEEeEEee
Q 030910 127 ----------SENKASQRVMEKAGFIREGLLRK 149 (169)
Q Consensus 127 ----------~~N~~a~~~y~~~Gf~~~~~~~~ 149 (169)
..|.+.++.+..+|++..|....
T Consensus 115 ~~~~~~~~~~~~n~~~i~~l~~lG~k~~g~t~~ 147 (418)
T COG2348 115 FDLGGEIIENYNNLAIIKLLKDLGYKHSGFTKG 147 (418)
T ss_pred ccCCCccccCcchHHHHHHHHHhhhhhcCcccc
Confidence 45789999999999999887654
No 149
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=65.53 E-value=39 Score=22.96 Aligned_cols=34 Identities=24% Similarity=0.225 Sum_probs=26.0
Q ss_pred HhcCCceeEEEE---eeccCHHHHHHHHHcCCeEEeEE
Q 030910 113 KELKYLDRIEGL---VFSENKASQRVMEKAGFIREGLL 147 (169)
Q Consensus 113 ~~~~~~~~v~~~---~~~~N~~a~~~y~~~Gf~~~~~~ 147 (169)
+.+ ++++|.+- +.+-|.+...|++++||......
T Consensus 114 ~al-~a~ri~vlTPY~~evn~~e~ef~~~~Gfeiv~~~ 150 (238)
T COG3473 114 NAL-GAQRISVLTPYIDEVNQREIEFLEANGFEIVDFK 150 (238)
T ss_pred Hhh-CcceEEEeccchhhhhhHHHHHHHhCCeEEEEee
Confidence 445 67776653 46779999999999999987653
No 150
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=65.22 E-value=20 Score=22.01 Aligned_cols=27 Identities=7% Similarity=-0.151 Sum_probs=17.9
Q ss_pred eEEEEeeccCHHHHHHHH-HcCCeEEeEE
Q 030910 120 RIEGLVFSENKASQRVME-KAGFIREGLL 147 (169)
Q Consensus 120 ~v~~~~~~~N~~a~~~y~-~~Gf~~~~~~ 147 (169)
.+.+.|. +-.+|++||+ .+||+...+.
T Consensus 5 Hv~irV~-DlerSi~FY~~vLG~~~~~~~ 32 (127)
T cd08358 5 HFVFKVG-NRNKTIKFYREVLGMKVLRHE 32 (127)
T ss_pred EEEEEeC-CHHHHHHHHHHhcCCEEEeee
Confidence 3444443 3359999995 5999986543
No 151
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=64.89 E-value=7.7 Score=23.74 Aligned_cols=19 Identities=21% Similarity=0.224 Sum_probs=15.4
Q ss_pred HHHHHHHHHcCCeEEeEEe
Q 030910 130 KASQRVMEKAGFIREGLLR 148 (169)
Q Consensus 130 ~~a~~~y~~~Gf~~~~~~~ 148 (169)
.+|.+||.++||+.-..+.
T Consensus 15 ~~S~~Fy~alGfk~Npq~s 33 (133)
T COG3607 15 EASKAFYTALGFKFNPQFS 33 (133)
T ss_pred HHHHHHHHHhCcccCCCcc
Confidence 4889999999999765544
No 152
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=64.41 E-value=23 Score=20.67 Aligned_cols=34 Identities=12% Similarity=-0.135 Sum_probs=23.0
Q ss_pred CceeEEEEeeccCHHHHHHHHH-cCCeEEeEEeeee
Q 030910 117 YLDRIEGLVFSENKASQRVMEK-AGFIREGLLRKYF 151 (169)
Q Consensus 117 ~~~~v~~~~~~~N~~a~~~y~~-~Gf~~~~~~~~~~ 151 (169)
++..+.+.|.. =.++++||++ +||+.........
T Consensus 3 ~i~hv~l~v~d-~~~s~~FY~~~lG~~~~~~~~~~~ 37 (120)
T cd08362 3 ALRGVGLGVPD-LAAAAAFYREVWGLSVVAEDDGIV 37 (120)
T ss_pred eeeEEEEecCC-HHHHHHHHHhCcCcEEEEecCCEE
Confidence 45667666643 3588999997 9999875543333
No 153
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=64.33 E-value=17 Score=22.22 Aligned_cols=29 Identities=21% Similarity=0.116 Sum_probs=20.6
Q ss_pred eeEEEEeeccCHHHHHHHHH-cCCeEEeEEe
Q 030910 119 DRIEGLVFSENKASQRVMEK-AGFIREGLLR 148 (169)
Q Consensus 119 ~~v~~~~~~~N~~a~~~y~~-~Gf~~~~~~~ 148 (169)
+.+.+.|. +=.+|++||++ +||+......
T Consensus 2 ~Hi~i~V~-D~e~s~~FY~~vLGf~~~~~~~ 31 (136)
T cd08342 2 DHVEFYVG-NAKQLASWFSTKLGFEPVAYHG 31 (136)
T ss_pred eEEEEEeC-CHHHHHHHHHHhcCCeEEEecC
Confidence 34555553 44588999999 9999876543
No 154
>PRK04531 acetylglutamate kinase; Provisional
Probab=63.34 E-value=62 Score=24.36 Aligned_cols=64 Identities=11% Similarity=0.050 Sum_probs=44.2
Q ss_pred eEEEEEECCeEEEEEEEEeCCCCCCcEEEEE-EEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHH
Q 030910 57 WYRAICVKDRPIGSIYVMPGIGKDERRGEIG-YAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKA 131 (169)
Q Consensus 57 ~~~~~~~~~~~vG~~~~~~~~~~~~~~~~i~-~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~ 131 (169)
..+.++.++..=|.+.+..... . +.+. |.+.+..||.|++.-+++.+.+ + .+++...+.++|+.
T Consensus 288 ~~~~~y~~~~y~~~Aiv~~~~~---~-~~Ldkf~v~~~~~~~~v~d~vf~~~~~----~---~~~L~Wrsr~~n~~ 352 (398)
T PRK04531 288 QLLRAYVSENYRAAAILTETGG---G-PYLDKFAVLDDARGEGLGRAVWNVMRE----E---TPQLFWRSRHNNTI 352 (398)
T ss_pred CceEEEEeCCCcEEEEEecCCC---c-eEeEEEEEccchhhcChHHHHHHHHHh----h---CCceEEEcCCCCCc
Confidence 3455555666667777765432 1 5564 8899999999999998887764 2 24577788888863
No 155
>KOG3014 consensus Protein involved in establishing cohesion between sister chromatids during DNA replication [Replication, recombination and repair]
Probab=59.77 E-value=57 Score=22.74 Aligned_cols=43 Identities=14% Similarity=0.045 Sum_probs=28.4
Q ss_pred EEEeCCCccCcChHHHHHHHHHHHHHHhcCCceeE-EEEeeccCH
Q 030910 87 GYAISAKYWGKGVATEAVKIAVACAFKELKYLDRI-EGLVFSENK 130 (169)
Q Consensus 87 ~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v-~~~~~~~N~ 130 (169)
.+||.+..|++|+++.++..+.......- -+.+. .+.+.|++.
T Consensus 188 RIWV~s~~Rr~gIAs~lldva~~~~~~g~-~isr~~iAfs~PTdd 231 (257)
T KOG3014|consen 188 RIWVSSLRRRKGIASLLLDVARCNFVYGE-VISREEIAFSDPTDD 231 (257)
T ss_pred EEEeehhhhhhhhHHHHHHHHHHhhhhhc-ccchhheEecCCCch
Confidence 38899999999999999988765432111 22222 355666654
No 156
>PRK00756 acyltransferase NodA; Provisional
Probab=59.05 E-value=43 Score=21.80 Aligned_cols=50 Identities=24% Similarity=0.312 Sum_probs=34.1
Q ss_pred EEEE-EEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHc
Q 030910 84 GEIG-YAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKA 139 (169)
Q Consensus 84 ~~i~-~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~ 139 (169)
+++| +.|.|+..|.||+..+ +.+..-+ +++ ++.--..+|.+ +.++-.+++
T Consensus 86 aElGLygVRpDLEGlGi~~S~-r~m~PvL-q~L-gVPF~FGtVR~---al~~Hv~R~ 136 (196)
T PRK00756 86 AELGLYGVRPDLEGLGIAHSI-RAMYPVL-QEL-GVPFAFGTVRH---ALRNHVERL 136 (196)
T ss_pred EEeeeeeeccccccccchhhH-HHHHHHH-Hhc-CCCeecccchH---HHHHHHHHH
Confidence 8888 5589999999998866 4555544 777 88766666653 344444443
No 157
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=58.92 E-value=18 Score=21.09 Aligned_cols=29 Identities=7% Similarity=-0.017 Sum_probs=20.2
Q ss_pred CceeEEEEeeccCHHHHHHHHHcCCeEEeE
Q 030910 117 YLDRIEGLVFSENKASQRVMEKAGFIREGL 146 (169)
Q Consensus 117 ~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~ 146 (169)
++..+.+.|.. =.+|.+||+.+||+....
T Consensus 3 ~l~hv~l~v~D-l~~s~~FY~~lGl~~~~~ 31 (113)
T cd07267 3 DIAHVRFEHPD-LDKAERFLTDFGLEVAAR 31 (113)
T ss_pred EEEEEEEccCC-HHHHHHHHHHcCCEEEEe
Confidence 34556665553 247899999999987654
No 158
>COG5630 ARG2 Acetylglutamate synthase [Amino acid transport and metabolism]
Probab=58.57 E-value=53 Score=24.52 Aligned_cols=79 Identities=10% Similarity=0.096 Sum_probs=45.8
Q ss_pred EEEECCeEEEEEEEEeCCCCCCcEEEEE-EEeCCCccC-cChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHH-HHHH
Q 030910 60 AICVKDRPIGSIYVMPGIGKDERRGEIG-YAISAKYWG-KGVATEAVKIAVACAFKELKYLDRIEGLVFSENKAS-QRVM 136 (169)
Q Consensus 60 ~~~~~~~~vG~~~~~~~~~~~~~~~~i~-~~v~~~~rg-~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a-~~~y 136 (169)
.++..|...|.+.++..........++. +.|.+..|| -|++..+++.+-+..- +.+......+|..- .-|-
T Consensus 377 ~~iVsgdY~g~aIlTyegs~~~~vpYLDKfAVl~~aQGs~gisd~vfniM~e~fP------~eL~WRSR~~N~vNkwYf~ 450 (495)
T COG5630 377 RAIVSGDYRGAAILTYEGSGENNVPYLDKFAVLDDAQGSEGISDAVFNIMREEFP------NELFWRSRHNNQVNKWYFA 450 (495)
T ss_pred eEEeeccceeeEEEEeeccCCCCCcceeeeeccccccccchHHHHHHHHHHHhCc------HhhhhhhcccCcchheeee
Confidence 3344666778888877633322225554 889999999 7999987776654321 23444455555432 2223
Q ss_pred HHcCCeEE
Q 030910 137 EKAGFIRE 144 (169)
Q Consensus 137 ~~~Gf~~~ 144 (169)
++.|+-..
T Consensus 451 rSvg~lk~ 458 (495)
T COG5630 451 RSVGYLKQ 458 (495)
T ss_pred hhhehhhc
Confidence 45555443
No 159
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=58.26 E-value=20 Score=20.88 Aligned_cols=29 Identities=17% Similarity=0.072 Sum_probs=20.5
Q ss_pred CceeEEEEeeccCHHHHHHHHHcCCeEEeE
Q 030910 117 YLDRIEGLVFSENKASQRVMEKAGFIREGL 146 (169)
Q Consensus 117 ~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~ 146 (169)
++..|.+.|.. =.+|.+||..+||+....
T Consensus 2 ~i~hv~l~v~d-~~~s~~FY~~lG~~~~~~ 30 (112)
T cd08344 2 SIDHFALEVPD-LEVARRFYEAFGLDVREE 30 (112)
T ss_pred ceeEEEEecCC-HHHHHHHHHHhCCcEEee
Confidence 45556665542 258899999999998654
No 160
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=57.14 E-value=6 Score=24.75 Aligned_cols=32 Identities=22% Similarity=0.156 Sum_probs=23.7
Q ss_pred CceeEEEEeeccCHHHHHHHHHcCCeEEeEEee
Q 030910 117 YLDRIEGLVFSENKASQRVMEKAGFIREGLLRK 149 (169)
Q Consensus 117 ~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~~~~ 149 (169)
|+..|...+... .++..+++++||+.+++.+.
T Consensus 9 G~dFvEFa~~~~-~~l~~~~~~lGF~~~a~hrs 40 (139)
T PF14696_consen 9 GFDFVEFAVPDA-QALAQLFTALGFQPVARHRS 40 (139)
T ss_dssp EEEEEEEE-SST-TSCHHHHCCCCEEEECCECC
T ss_pred CeEEEEEecCCH-HHHHHHHHHhCcceEEecCC
Confidence 677788777664 56667889999999997643
No 161
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=56.97 E-value=32 Score=20.05 Aligned_cols=30 Identities=20% Similarity=0.050 Sum_probs=22.5
Q ss_pred ceeEEEEeeccCHHHHHHHHH-cCCeEEeEEe
Q 030910 118 LDRIEGLVFSENKASQRVMEK-AGFIREGLLR 148 (169)
Q Consensus 118 ~~~v~~~~~~~N~~a~~~y~~-~Gf~~~~~~~ 148 (169)
+..|.+.|..- .++.+||++ +||+......
T Consensus 2 l~Hi~i~v~d~-~~~~~FY~~~lG~~~~~~~~ 32 (128)
T PF00903_consen 2 LDHIAIRVKDL-EKAIDFYTDVLGFRLVEESD 32 (128)
T ss_dssp EEEEEEEESCH-HHHHHHHHHTTTSEEEEEEE
T ss_pred eEEEEEEcCCH-HHHHHHHHHHhCCcEEeeec
Confidence 45667666544 488999996 9999987765
No 162
>COG2898 Uncharacterized conserved protein [Function unknown]
Probab=56.50 E-value=98 Score=24.44 Aligned_cols=59 Identities=15% Similarity=0.050 Sum_probs=42.7
Q ss_pred CCeEEEEEEEEeCCCCCCcEEEEEEE-eCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeec
Q 030910 64 KDRPIGSIYVMPGIGKDERRGEIGYA-ISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFS 127 (169)
Q Consensus 64 ~~~~vG~~~~~~~~~~~~~~~~i~~~-v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~ 127 (169)
+|+++|++.+.+...... ..+.++ -+|+ --+|+.-.|+..++.+++++ |++++.+...+
T Consensus 401 ~g~VvaFa~l~~~~~~~~--~SlDlMR~sp~-ap~g~mdfLf~~li~~aKe~--G~~~fsLgmAp 460 (538)
T COG2898 401 EGEVVAFANLMPTGGKEG--YSLDLMRRSPD-APNGTMDFLFSELILWAKEE--GYQRFSLGMAP 460 (538)
T ss_pred CCCeEEEEeecccCCcce--eEEEeeecCCC-CCchHHHHHHHHHHHHHHHc--CCeEEecCCcc
Confidence 788999999998665322 333322 2444 34699999999999999666 99998876654
No 163
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=56.37 E-value=41 Score=22.05 Aligned_cols=45 Identities=9% Similarity=0.100 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeEE
Q 030910 100 ATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGLL 147 (169)
Q Consensus 100 g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~~ 147 (169)
|+.|+.++++-+ +. .+.++.+.+.++.+.-..+.++.|++.+.+-
T Consensus 26 GkpLI~~v~~al-~~--~~d~i~v~isp~tp~t~~~~~~~gv~vi~tp 70 (177)
T COG2266 26 GKPLIDRVLEAL-RK--IVDEIIVAISPHTPKTKEYLESVGVKVIETP 70 (177)
T ss_pred CccHHHHHHHHH-Hh--hcCcEEEEeCCCCHhHHHHHHhcCceEEEcC
Confidence 567888888776 43 5789999999999999999999998877653
No 164
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=55.75 E-value=87 Score=23.61 Aligned_cols=87 Identities=10% Similarity=-0.017 Sum_probs=46.3
Q ss_pred EEEEEEC-CeEEEEEEEEeCCCCCCcEEEEEEEe-CC--CccCcChHHHHHHHHHHHHHHhcCCceeEEEEe--------
Q 030910 58 YRAICVK-DRPIGSIYVMPGIGKDERRGEIGYAI-SA--KYWGKGVATEAVKIAVACAFKELKYLDRIEGLV-------- 125 (169)
Q Consensus 58 ~~~~~~~-~~~vG~~~~~~~~~~~~~~~~i~~~v-~~--~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~-------- 125 (169)
.+.+..+ +.++|.+.+........ ..+.+.- .| ++...-+-..+++.+..+++++ ++-.|.+..
T Consensus 37 ~vgv~~d~~~v~aa~ll~~~~~~~g--~~~~yiprGPv~d~~d~ell~~f~~~Lk~~akk~--~a~~lridP~~~~~~~~ 112 (406)
T PF02388_consen 37 RVGVKDDGGEVAAAALLLRKKPFKG--FKYAYIPRGPVMDYSDEELLEFFLEELKKYAKKK--RALFLRIDPNVIYQERD 112 (406)
T ss_dssp EEEEE-TTS-EEEEEEEEEEECTTT--CEEEEETT--EC-TT-HHHHHHHHHHHHHHHCTT--TEEEEEE--S-EEECE-
T ss_pred EEEEEeCCCeEEEEEEEEEeccCCc--eeEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHC--CEEEEEEeCchhhhhcc
Confidence 3334444 77777665555443322 2222221 35 6777778888899999998554 333333221
Q ss_pred -------eccCHHHHHHHHHcCCeEEeEEe
Q 030910 126 -------FSENKASQRVMEKAGFIREGLLR 148 (169)
Q Consensus 126 -------~~~N~~a~~~y~~~Gf~~~~~~~ 148 (169)
...|...+..++++||...+...
T Consensus 113 ~~g~~~~~~~~~~~~~~l~~~G~~~~g~~~ 142 (406)
T PF02388_consen 113 EDGEPIEGEENDELIENLKALGFRHQGFTK 142 (406)
T ss_dssp TTS-EEEE-S-THHHHHHHHTT-CCTS-SS
T ss_pred cccccccCcchHHHHHHHHhcCceecCccc
Confidence 23466788999999999887644
No 165
>cd03173 DUF619-like DUF619 domain of various N-acetylglutamate Kinases and N-acetylglutamate Synthases. DUF619-like: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. This subgroup also includes the DUF619 domain of the FABP N-acetylglutamate kinase (NAGK), the enzyme that catalyzes the second reaction of arginine
Probab=53.98 E-value=43 Score=19.59 Aligned_cols=63 Identities=13% Similarity=0.069 Sum_probs=42.4
Q ss_pred EEEEECCeEEEEEEEEeCCCCCCcEEEEE-EEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHH
Q 030910 59 RAICVKDRPIGSIYVMPGIGKDERRGEIG-YAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKA 131 (169)
Q Consensus 59 ~~~~~~~~~vG~~~~~~~~~~~~~~~~i~-~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~ 131 (169)
+.++.++..=|.+.+...... . +.+. +.|.+..++.|++..+.+.+.+- . +++...+.++|+.
T Consensus 12 ~~~y~de~y~~~AIvt~~~~~--v-~~LdkFav~~~~~~~gv~D~vf~~i~~d----~---~~L~Wrsr~~n~~ 75 (98)
T cd03173 12 FASYADEPLEGVAIVTYEGNS--I-PYLDKFAVSDHLWLNNVTDNIFNLIRKD----F---PSLLWRVRENDAN 75 (98)
T ss_pred eEEEEcCCccEEEEEecCCCC--C-EEEEEEEEcccccccCHHHHHHHHHHhh----C---CeeEEEeCCCCCc
Confidence 344445556666666654411 2 5664 88999999999999988877642 2 4677778877753
No 166
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=53.05 E-value=34 Score=19.95 Aligned_cols=29 Identities=7% Similarity=0.043 Sum_probs=19.4
Q ss_pred ceeEEEEeeccCHHHHHHHHH-cCCeEEeEE
Q 030910 118 LDRIEGLVFSENKASQRVMEK-AGFIREGLL 147 (169)
Q Consensus 118 ~~~v~~~~~~~N~~a~~~y~~-~Gf~~~~~~ 147 (169)
+..|.+.|. +=.+|.+||++ +||+.....
T Consensus 2 i~hv~l~v~-d~~~a~~FY~~~lG~~~~~~~ 31 (126)
T cd08346 2 LHHVTLITR-DAQETVDFYTDVLGLRLVKKT 31 (126)
T ss_pred cccEEEEcC-ChhHhHHHHHHccCCEEeeeE
Confidence 445555553 33588999985 899987554
No 167
>COG2994 HlyC ACP:hemolysin acyltransferase (hemolysin-activating protein) [Posttranslational modification, protein turnover, chaperones]
Probab=52.36 E-value=57 Score=20.53 Aligned_cols=85 Identities=14% Similarity=-0.025 Sum_probs=47.8
Q ss_pred ChHHHHHHHHHhhccCCeEEEEE-ECCeEEEEEEEEeCCCCC------------------CcEEEEEEEeCCCccCcChH
Q 030910 40 FRDDAVAFLKEVIKSHPWYRAIC-VKDRPIGSIYVMPGIGKD------------------ERRGEIGYAISAKYWGKGVA 100 (169)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vG~~~~~~~~~~~------------------~~~~~i~~~v~~~~rg~G~g 100 (169)
...++..++--.+.. ..+.+.. .+|++|||++....++.. .....+-.+++|= |-+
T Consensus 37 pV~e~~~~iLPalk~-~Qf~ly~de~g~Piaf~~WA~vde~~e~~lL~~~~~l~p~dW~SG~~iwii~~iAPf----Gh~ 111 (148)
T COG2994 37 PVAEISRNILPALKL-GQFALYFDEHGRPIAFCTWAFVDEQAEEELLENDRNLSPEDWASGNNIWIIDWIAPF----GHS 111 (148)
T ss_pred cHHHHHHHHhHHHhc-CceEEEEcCCCCeeEEEEEeecCHHHHHHHHhCCCCCChhhccCCCeeEEEEEEccC----Cch
Confidence 344444444444432 2333334 489999999998876431 1112233456675 778
Q ss_pred HHHHHHHHHHHHHhcCCceeEEEEeeccCHHHH
Q 030910 101 TEAVKIAVACAFKELKYLDRIEGLVFSENKASQ 133 (169)
Q Consensus 101 ~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~ 133 (169)
+++.+.+.+.+|... .+.+..+..|.+.+
T Consensus 112 r~~~~dl~~~lFp~~----~vr~~~~~~~dk~l 140 (148)
T COG2994 112 RQMVKDLHRNLFPDR----TVRALYHKGNDKGL 140 (148)
T ss_pred HHHHHHHHHHhCchh----hhhheeecCCCcce
Confidence 888877777666552 34444555555443
No 168
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=51.51 E-value=20 Score=20.69 Aligned_cols=16 Identities=13% Similarity=0.013 Sum_probs=13.1
Q ss_pred HHHHHHHHH-cCCeEEe
Q 030910 130 KASQRVMEK-AGFIREG 145 (169)
Q Consensus 130 ~~a~~~y~~-~Gf~~~~ 145 (169)
..|.+||++ +||+...
T Consensus 12 ~~s~~FY~~~lG~~~~~ 28 (112)
T cd07238 12 EAAAAFYADVLGLDVVM 28 (112)
T ss_pred HHHHHHHHHhcCceEEE
Confidence 478999997 9999763
No 169
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=49.98 E-value=13 Score=20.75 Aligned_cols=36 Identities=8% Similarity=0.075 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHc
Q 030910 102 EAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKA 139 (169)
Q Consensus 102 ~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~ 139 (169)
++++.+...-|... .+ .+++.+.|.+..|+..|...
T Consensus 3 ~LL~~I~~~~Fa~~-dl-~LyLDTHP~d~~Al~~y~~~ 38 (78)
T PF12652_consen 3 ELLREIQEVSFAVV-DL-NLYLDTHPDDQEALEYYNEY 38 (78)
T ss_pred HHHHHHHHHhhHHH-HH-HHHhcCCCCcHHHHHHHHHH
Confidence 34444444433332 22 38899999999999888754
No 170
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=49.44 E-value=31 Score=19.57 Aligned_cols=21 Identities=24% Similarity=0.127 Sum_probs=16.6
Q ss_pred HHHHHHHHH-cCCeEEeEEeee
Q 030910 130 KASQRVMEK-AGFIREGLLRKY 150 (169)
Q Consensus 130 ~~a~~~y~~-~Gf~~~~~~~~~ 150 (169)
.+|.+||++ +||+........
T Consensus 7 ~~a~~FY~~~lg~~~~~~~~~~ 28 (108)
T PF12681_consen 7 EAAAAFYEDVLGFEVVFDDPDY 28 (108)
T ss_dssp HHHHHHHHHTTTSEEEEEETSE
T ss_pred HHHHHHHHHhcCCEEEEeCCCe
Confidence 478999998 999998854443
No 171
>KOG4387 consensus Ornithine decarboxylase antizyme [Amino acid transport and metabolism]
Probab=45.55 E-value=87 Score=20.65 Aligned_cols=59 Identities=14% Similarity=-0.026 Sum_probs=45.7
Q ss_pred EEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCH---HHHHHHHHcCCeEEeEE
Q 030910 88 YAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENK---ASQRVMEKAGFIREGLL 147 (169)
Q Consensus 88 ~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~---~a~~~y~~~Gf~~~~~~ 147 (169)
++.-|+-.--+..++-+-.++++|-+.+ .+++|.+...++|. +-.+-+.-.||++....
T Consensus 105 ~~~IPdq~l~~gsKe~lvalLEfAEekl-~~d~Vfi~F~K~R~dr~~LlrtfsyvGFEpvrp~ 166 (191)
T KOG4387|consen 105 FFEIPDQALDVGSKEGLVALLEFAEEKL-HVDKVFICFDKNREDRAALLRTFSYVGFEPVRPD 166 (191)
T ss_pred EEecCcchhcccchHhHHHHHHHHHHhh-ccceEEEEEecCccChHhhhhhehcceeeecCCC
Confidence 4456777777888999999999998888 99999998887654 33466667899887653
No 172
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=45.31 E-value=43 Score=19.65 Aligned_cols=30 Identities=10% Similarity=0.032 Sum_probs=20.6
Q ss_pred CceeEEEEeeccCHHHHHHHHH-cCCeEEeEE
Q 030910 117 YLDRIEGLVFSENKASQRVMEK-AGFIREGLL 147 (169)
Q Consensus 117 ~~~~v~~~~~~~N~~a~~~y~~-~Gf~~~~~~ 147 (169)
++..+.+.|.. =.+|.+||.+ +||+.....
T Consensus 4 ~l~hv~l~v~D-l~~s~~FY~~~lG~~~~~~~ 34 (122)
T cd07265 4 RPGHVQLRVLD-LEEAIKHYREVLGLDEVGRD 34 (122)
T ss_pred eEeEEEEEeCC-HHHHHHHHHhccCCEeeeec
Confidence 45566665653 2588999975 999876553
No 173
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=45.09 E-value=5.3 Score=32.00 Aligned_cols=99 Identities=17% Similarity=0.168 Sum_probs=62.6
Q ss_pred HHHHHHhhccCC-eEEEEEECCe-EEEEEEEEeCCCCCCcEEEEE-EEeCCCccCcChHHHHHHHHHHHHHHhcCCceeE
Q 030910 45 VAFLKEVIKSHP-WYRAICVKDR-PIGSIYVMPGIGKDERRGEIG-YAISAKYWGKGVATEAVKIAVACAFKELKYLDRI 121 (169)
Q Consensus 45 ~~~~~~~~~~~~-~~~~~~~~~~-~vG~~~~~~~~~~~~~~~~i~-~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v 121 (169)
++++.+...+.. ..+....++. +||-+++.+.+.... .++. -.|....|-+|+|+.+++++-++..... .+...
T Consensus 407 kEyi~rlv~d~~h~~~~~~~d~~g~vggi~~r~f~~k~f--~eivf~av~~~eqv~g~g~hlmnhlkd~~~~~~-~i~~~ 483 (720)
T KOG1472|consen 407 KEYISRLVFDTSHHVMARIKDNEGVVGGICFRPFPEKGF--TEIVFCAVTTDEQVKGSGTHLMNHLKDYVRSSS-TIDYA 483 (720)
T ss_pred HHHHHhhccccccccceeeccccccccccccCcCcccCC--cceeeccccCcccccccCcCchhhHHHHhhccc-hHHHH
Confidence 445555544333 3333333433 999999988876544 5555 4478899999999999999999985542 23332
Q ss_pred EEEeeccCHHHHHHHHHcCCeEEeEEee
Q 030910 122 EGLVFSENKASQRVMEKAGFIREGLLRK 149 (169)
Q Consensus 122 ~~~~~~~N~~a~~~y~~~Gf~~~~~~~~ 149 (169)
. +..+| .++-.+++.||...-.+..
T Consensus 484 l--tyad~-~aigyfkkqgfs~ei~~~~ 508 (720)
T KOG1472|consen 484 L--TYADE-GAIGYFKKQGFSKEIKFEK 508 (720)
T ss_pred H--Hhhhh-cccccccCccchhhccccc
Confidence 2 23332 4667778888876554444
No 174
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=44.46 E-value=53 Score=20.30 Aligned_cols=30 Identities=13% Similarity=-0.017 Sum_probs=21.2
Q ss_pred CceeEEEEeeccCHHHHHHHHH-cCCeEEeEE
Q 030910 117 YLDRIEGLVFSENKASQRVMEK-AGFIREGLL 147 (169)
Q Consensus 117 ~~~~v~~~~~~~N~~a~~~y~~-~Gf~~~~~~ 147 (169)
.+..+.+.|..- .++.+||++ +||+.....
T Consensus 6 ~l~Hv~l~v~Dl-e~s~~FY~~vLGf~~~~~~ 36 (143)
T cd07243 6 RLDHCLLTGEDI-AETTRFFTDVLDFYLAERV 36 (143)
T ss_pred eeCEEEEecCCH-HHHHHHHHHhcCCEEEEEE
Confidence 456677666533 588999976 999876553
No 175
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=42.84 E-value=68 Score=22.30 Aligned_cols=43 Identities=9% Similarity=-0.113 Sum_probs=30.7
Q ss_pred ChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCe
Q 030910 98 GVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFI 142 (169)
Q Consensus 98 G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~ 142 (169)
|.|+..+...+..++... +.+-+.+.+++.|..... |..++-+
T Consensus 13 GvGKSt~a~~la~~l~~~-g~~vl~iD~D~~n~~~~~-~~~l~~~ 55 (241)
T PRK13886 13 GVGKSFIAATIAQYKASK-GQKPLCIDTDPVNATFEG-YKALNVR 55 (241)
T ss_pred CCcHHHHHHHHHHHHHhC-CCCEEEEECCCCCchhhh-HHhcCCc
Confidence 889988777777766666 888888899999965433 3444433
No 176
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=42.41 E-value=46 Score=21.15 Aligned_cols=27 Identities=15% Similarity=0.058 Sum_probs=19.9
Q ss_pred CceeEEEEeeccCHHHHHHHHH-cCCeEE
Q 030910 117 YLDRIEGLVFSENKASQRVMEK-AGFIRE 144 (169)
Q Consensus 117 ~~~~v~~~~~~~N~~a~~~y~~-~Gf~~~ 144 (169)
++..|.+.|.. =.+|++||++ +||+..
T Consensus 4 ~i~Hv~i~V~D-le~s~~FY~~~LG~~~~ 31 (162)
T TIGR03645 4 TFSHIGISVPD-LDAAVKFYTEVLGWYLI 31 (162)
T ss_pred eEEEEEEEeCC-HHHHHHHHHHhcCCEEE
Confidence 56677776653 3589999986 899875
No 177
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=41.92 E-value=68 Score=18.40 Aligned_cols=31 Identities=10% Similarity=-0.098 Sum_probs=21.0
Q ss_pred ceeEEEEeeccCHHHHHHHHH-cCCeEEeEEee
Q 030910 118 LDRIEGLVFSENKASQRVMEK-AGFIREGLLRK 149 (169)
Q Consensus 118 ~~~v~~~~~~~N~~a~~~y~~-~Gf~~~~~~~~ 149 (169)
+..+.+.|. +=.++++||++ +||+.......
T Consensus 3 l~hv~l~v~-d~~~~~~FY~~~lg~~~~~~~~~ 34 (117)
T cd07240 3 IAYAELEVP-DLERALEFYTDVLGLTVLDRDAG 34 (117)
T ss_pred eeEEEEecC-CHHHHHHHHHhccCcEEEeecCC
Confidence 445555443 23588999998 99998866533
No 178
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=41.72 E-value=44 Score=19.38 Aligned_cols=30 Identities=13% Similarity=0.063 Sum_probs=21.8
Q ss_pred CceeEEEEeeccCHHHHHHHHH-cCCeEEeEE
Q 030910 117 YLDRIEGLVFSENKASQRVMEK-AGFIREGLL 147 (169)
Q Consensus 117 ~~~~v~~~~~~~N~~a~~~y~~-~Gf~~~~~~ 147 (169)
++..+.+.|. +=.++.+||++ +||+.....
T Consensus 3 ~l~hi~l~v~-d~~~s~~Fy~~~lG~~~~~~~ 33 (125)
T cd07253 3 RIDHVVLTVA-DIEATLDFYTRVLGMEVVRFG 33 (125)
T ss_pred ccceEEEEec-CHHHHHHHHHHHhCceeeccc
Confidence 4566776664 33588999998 899987654
No 179
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=41.66 E-value=63 Score=19.06 Aligned_cols=28 Identities=18% Similarity=0.143 Sum_probs=19.8
Q ss_pred ceeEEEEeeccCHHHHHHHHHc----CCeEEeE
Q 030910 118 LDRIEGLVFSENKASQRVMEKA----GFIREGL 146 (169)
Q Consensus 118 ~~~v~~~~~~~N~~a~~~y~~~----Gf~~~~~ 146 (169)
+..|.+.|. +=.++.+||++. ||+....
T Consensus 2 i~Hv~i~v~-d~~~~~~Fy~~~l~~~G~~~~~~ 33 (128)
T cd07242 2 IHHVELTVR-DLERSRAFYDWLLGLLGFEEVKE 33 (128)
T ss_pred CceEEEEeC-CHHHHHHHHHHHHhhcCCEEEEe
Confidence 456666664 335889999886 9998665
No 180
>PRK14968 putative methyltransferase; Provisional
Probab=41.66 E-value=85 Score=20.13 Aligned_cols=47 Identities=13% Similarity=-0.039 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeEEeee
Q 030910 102 EAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGLLRKY 150 (169)
Q Consensus 102 ~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~~~~~ 150 (169)
.+++.+.+.+ +.. |.-.+.......+.....+.++.||+........
T Consensus 129 ~~i~~~~~~L-k~g-G~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~ 175 (188)
T PRK14968 129 RFLDEVGRYL-KPG-GRILLLQSSLTGEDEVLEYLEKLGFEAEVVAEEK 175 (188)
T ss_pred HHHHHHHHhc-CCC-eEEEEEEcccCCHHHHHHHHHHCCCeeeeeeecc
Confidence 3455555555 332 4332333333345678899999999887655443
No 181
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=40.62 E-value=81 Score=18.88 Aligned_cols=72 Identities=13% Similarity=-0.070 Sum_probs=42.8
Q ss_pred CCeEEEEEEEEeCCCCCCcEEEEEEEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeE
Q 030910 64 KDRPIGSIYVMPGIGKDERRGEIGYAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIR 143 (169)
Q Consensus 64 ~~~~vG~~~~~~~~~~~~~~~~i~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~ 143 (169)
.+++-|.-.+....+.+.. .++.....|. .....+++.+.+. |++.+.+.....+..+++..++.|.+.
T Consensus 37 ~~~i~G~~~y~sl~e~p~~-iDlavv~~~~--------~~~~~~v~~~~~~--g~~~v~~~~g~~~~~~~~~a~~~gi~v 105 (116)
T PF13380_consen 37 GGEILGIKCYPSLAEIPEP-IDLAVVCVPP--------DKVPEIVDEAAAL--GVKAVWLQPGAESEELIEAAREAGIRV 105 (116)
T ss_dssp CSEETTEE-BSSGGGCSST--SEEEE-S-H--------HHHHHHHHHHHHH--T-SEEEE-TTS--HHHHHHHHHTT-EE
T ss_pred ceEECcEEeeccccCCCCC-CCEEEEEcCH--------HHHHHHHHHHHHc--CCCEEEEEcchHHHHHHHHHHHcCCEE
Confidence 5677777766666542222 4554443332 3444555666344 899999999999999999999999998
Q ss_pred EeE
Q 030910 144 EGL 146 (169)
Q Consensus 144 ~~~ 146 (169)
+|.
T Consensus 106 igp 108 (116)
T PF13380_consen 106 IGP 108 (116)
T ss_dssp EES
T ss_pred EeC
Confidence 864
No 182
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=40.28 E-value=70 Score=18.56 Aligned_cols=27 Identities=4% Similarity=-0.086 Sum_probs=18.2
Q ss_pred eeEEEEeeccCHHHHHHHHH-cCCeEEeE
Q 030910 119 DRIEGLVFSENKASQRVMEK-AGFIREGL 146 (169)
Q Consensus 119 ~~v~~~~~~~N~~a~~~y~~-~Gf~~~~~ 146 (169)
..+.+.|.. =.+|++||++ +||+....
T Consensus 3 ~Hi~l~v~d-l~~s~~FY~~~lg~~~~~~ 30 (125)
T cd07241 3 EHVAIWTKD-LERMKAFYVTYFGATSNEK 30 (125)
T ss_pred eEEEEEecC-HHHHHHHHHHHhCCEeece
Confidence 455655542 3588999987 79987543
No 183
>PF13289 SIR2_2: SIR2-like domain
Probab=40.03 E-value=86 Score=19.03 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=16.0
Q ss_pred eEEEEeeccC-HHHHHHHHHcCCeE
Q 030910 120 RIEGLVFSEN-KASQRVMEKAGFIR 143 (169)
Q Consensus 120 ~v~~~~~~~N-~~a~~~y~~~Gf~~ 143 (169)
.+++.+...+ .....++++.|.++
T Consensus 118 ~~~~v~~~~~~~~~~~~~~~~~i~~ 142 (143)
T PF13289_consen 118 RHYIVIPDPDDENEREFLEKYGIEV 142 (143)
T ss_pred cEEEEEcCCchHHHHHHHHHcCCEE
Confidence 4444444444 67788888888875
No 184
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=39.63 E-value=51 Score=19.38 Aligned_cols=29 Identities=14% Similarity=-0.039 Sum_probs=19.5
Q ss_pred CceeEEEEeeccCHHHHHHHHH-cCCeEEeE
Q 030910 117 YLDRIEGLVFSENKASQRVMEK-AGFIREGL 146 (169)
Q Consensus 117 ~~~~v~~~~~~~N~~a~~~y~~-~Gf~~~~~ 146 (169)
++..+.+.|..- .+|.+||+. +||+....
T Consensus 2 ~l~~v~l~v~Dl-~~s~~FY~~~LG~~~~~~ 31 (120)
T cd07252 2 SLGYLGVESSDL-DAWRRFATDVLGLQVGDR 31 (120)
T ss_pred cccEEEEEeCCH-HHHHHHHHhccCceeccC
Confidence 345566666543 478999976 89987543
No 185
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=39.10 E-value=78 Score=18.28 Aligned_cols=20 Identities=10% Similarity=0.014 Sum_probs=15.0
Q ss_pred cCHHHHHHHH-HcCCeEEeEE
Q 030910 128 ENKASQRVME-KAGFIREGLL 147 (169)
Q Consensus 128 ~N~~a~~~y~-~~Gf~~~~~~ 147 (169)
+=.+|.+||. .+||+.....
T Consensus 11 d~~~a~~FY~~~lG~~~~~~~ 31 (122)
T cd07246 11 DAAAAIDFYKKAFGAEELERM 31 (122)
T ss_pred CHHHHHHHHHHhhCCEEEEEE
Confidence 3348899998 5899987654
No 186
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=38.72 E-value=73 Score=19.19 Aligned_cols=29 Identities=10% Similarity=-0.047 Sum_probs=21.0
Q ss_pred CceeEEEEeeccCHHHHHHHHH-cCCeEEeE
Q 030910 117 YLDRIEGLVFSENKASQRVMEK-AGFIREGL 146 (169)
Q Consensus 117 ~~~~v~~~~~~~N~~a~~~y~~-~Gf~~~~~ 146 (169)
++..+.+.|. +-.+|++||+. +||.....
T Consensus 4 ~i~hv~l~V~-dl~~s~~FY~~~lG~~~~~~ 33 (131)
T cd08364 4 GLSHITLIVK-DLNKTTAFLQNIFNAREVYS 33 (131)
T ss_pred cEeEEEEEeC-CHHHHHHHHHHHhCCeeEEe
Confidence 5677777664 44688999976 99976543
No 187
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=38.28 E-value=82 Score=18.48 Aligned_cols=29 Identities=17% Similarity=0.068 Sum_probs=19.5
Q ss_pred ceeEEEEeeccCHHHHHHHHH-cCCeEEeEE
Q 030910 118 LDRIEGLVFSENKASQRVMEK-AGFIREGLL 147 (169)
Q Consensus 118 ~~~v~~~~~~~N~~a~~~y~~-~Gf~~~~~~ 147 (169)
+..+.+.|. +=.++++||++ +||+.....
T Consensus 2 i~hv~l~v~-d~~~~~~FY~~vLG~~~~~~~ 31 (121)
T cd07244 2 INHITLAVS-DLERSVAFYVDLLGFKLHVRW 31 (121)
T ss_pred cceEEEEEC-CHHHHHHHHHHhcCCEEEEec
Confidence 445666553 22588999985 999886543
No 188
>PRK13913 3-methyladenine DNA glycosylase; Provisional
Probab=37.79 E-value=52 Score=22.45 Aligned_cols=39 Identities=21% Similarity=0.237 Sum_probs=28.4
Q ss_pred CcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeE
Q 030910 96 GKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIR 143 (169)
Q Consensus 96 g~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~ 143 (169)
=+|+|.+..+.++-+++.. . .+. | .....++..|+|+..
T Consensus 126 l~GIG~kTAd~iLlya~~r--p--~fv--V---Dty~~Rv~~RlG~~~ 164 (218)
T PRK13913 126 QKGIGKESADAILCYVCAK--E--VMV--V---DKYSYLFLKKLGIEI 164 (218)
T ss_pred CCCccHHHHHHHHHHHcCC--C--ccc--c---chhHHHHHHHcCCCC
Confidence 3599999999999998554 2 122 2 234789999999964
No 189
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=37.70 E-value=1.6e+02 Score=21.74 Aligned_cols=53 Identities=13% Similarity=0.031 Sum_probs=34.5
Q ss_pred EEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHH-HHHHHHcCCeEEeEEeee
Q 030910 88 YAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKAS-QRVMEKAGFIREGLLRKY 150 (169)
Q Consensus 88 ~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a-~~~y~~~Gf~~~~~~~~~ 150 (169)
++++|.. .|+...+++.+.+ . . .-|+++|++...+- .+.+.+ ||+.....+=.
T Consensus 292 v~lDPPR--~G~~~~~l~~l~~-~--~----~ivyvSC~p~tlarDl~~L~~-gY~l~~v~~~D 345 (362)
T PRK05031 292 IFVDPPR--AGLDDETLKLVQA-Y--E----RILYISCNPETLCENLETLSQ-THKVERFALFD 345 (362)
T ss_pred EEECCCC--CCCcHHHHHHHHc-c--C----CEEEEEeCHHHHHHHHHHHcC-CcEEEEEEEcc
Confidence 5679994 6888888877765 1 1 34888888854321 445544 99988765433
No 190
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=37.49 E-value=76 Score=21.97 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=27.6
Q ss_pred HHHhcCCceeEEEEe---eccCHHHHHHHHHcCCeEEeEE
Q 030910 111 AFKELKYLDRIEGLV---FSENKASQRVMEKAGFIREGLL 147 (169)
Q Consensus 111 ~~~~~~~~~~v~~~~---~~~N~~a~~~y~~~Gf~~~~~~ 147 (169)
+++.+ |+++|.+-+ ..-|....++|++.||+.....
T Consensus 114 AL~al-g~~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~ 152 (239)
T TIGR02990 114 GLAAL-GVRRISLLTPYTPETSRPMAQYFAVRGFEIVNFT 152 (239)
T ss_pred HHHHc-CCCEEEEECCCcHHHHHHHHHHHHhCCcEEeeee
Confidence 44677 999988643 3347788999999999988763
No 191
>PF04015 DUF362: Domain of unknown function (DUF362) ; InterPro: IPR007160 This domain is found in some iron-sulphur proteins.
Probab=36.86 E-value=1.1e+02 Score=20.36 Aligned_cols=49 Identities=14% Similarity=0.117 Sum_probs=35.3
Q ss_pred CcChHHHHHHHHHHHHHHhcCCceeEEEEeeccC--HHHHHHHHHcCCeEEeE
Q 030910 96 GKGVATEAVKIAVACAFKELKYLDRIEGLVFSEN--KASQRVMEKAGFIREGL 146 (169)
Q Consensus 96 g~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N--~~a~~~y~~~Gf~~~~~ 146 (169)
+.-.--++++.+++.+++. |...+.+.-.+.. ......++..||.....
T Consensus 17 ~~~T~P~vv~avv~~l~~~--g~~~i~i~e~~~~~~~~~~~~~~~~G~~~~~~ 67 (206)
T PF04015_consen 17 GATTHPEVVRAVVEMLKEA--GAKEIIIAESPGSGAADTREVFKRSGYEEIAE 67 (206)
T ss_pred CccCCHHHHHHHHHHHHHc--CCCceEEEeCCCcchHhHHHHHHHcchhhHHH
Confidence 4444557999999999555 7776666555444 47889999999987643
No 192
>PRK10291 glyoxalase I; Provisional
Probab=36.59 E-value=48 Score=19.79 Aligned_cols=18 Identities=11% Similarity=-0.053 Sum_probs=14.0
Q ss_pred HHHHHHHHH-cCCeEEeEE
Q 030910 130 KASQRVMEK-AGFIREGLL 147 (169)
Q Consensus 130 ~~a~~~y~~-~Gf~~~~~~ 147 (169)
.+|++||++ +||+.....
T Consensus 8 e~s~~FY~~~LG~~~~~~~ 26 (129)
T PRK10291 8 QRSIDFYTNVLGMKLLRTS 26 (129)
T ss_pred HHHHHHHHhccCCEEEEee
Confidence 589999976 999876543
No 193
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=36.57 E-value=94 Score=18.48 Aligned_cols=54 Identities=11% Similarity=-0.101 Sum_probs=37.9
Q ss_pred CCccCcChHHHHHHHHHHHHHHhcCC-ceeEEEEeeccCHHHHHHHHHcCCeEEeE
Q 030910 92 AKYWGKGVATEAVKIAVACAFKELKY-LDRIEGLVFSENKASQRVMEKAGFIREGL 146 (169)
Q Consensus 92 ~~~rg~G~g~~l~~~~~~~~~~~~~~-~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~ 146 (169)
.---.+|+...+++.+.+++...- + +..-++.+...-+-|.+..+++|=+.+..
T Consensus 26 KHSt~C~IS~~a~~~~e~~~~~~~-~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSP 80 (105)
T PF11009_consen 26 KHSTRCPISAMALREFEKFWEESP-DEIPVYYLDVIEYRPVSNAIAEDFGVKHESP 80 (105)
T ss_dssp EE-TT-HHHHHHHHHHHHHHHHHT-----EEEEEGGGGHHHHHHHHHHHT----SS
T ss_pred EeCCCChhhHHHHHHHHHHhhcCC-ccceEEEEEEEeCchhHHHHHHHhCCCcCCC
Confidence 334567999999999999985543 3 78888999999999999999999887654
No 194
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=36.54 E-value=77 Score=19.61 Aligned_cols=29 Identities=14% Similarity=-0.184 Sum_probs=20.7
Q ss_pred CceeEEEEeeccCHHHHHHHHH-cCCeEEeE
Q 030910 117 YLDRIEGLVFSENKASQRVMEK-AGFIREGL 146 (169)
Q Consensus 117 ~~~~v~~~~~~~N~~a~~~y~~-~Gf~~~~~ 146 (169)
++..+.+.|..- .+|.+||+. +||+....
T Consensus 17 ~i~hv~l~v~Dl-~~a~~FY~~vLG~~~~~~ 46 (150)
T TIGR00068 17 RLLHTMLRVGDL-DKSLDFYTEVLGMKLLRK 46 (150)
T ss_pred eEEEEEEEecCH-HHHHHHHHHhcCCEEEEE
Confidence 566677766533 588999985 89987553
No 195
>PLN02300 lactoylglutathione lyase
Probab=36.40 E-value=54 Score=23.14 Aligned_cols=41 Identities=7% Similarity=-0.087 Sum_probs=25.2
Q ss_pred HHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHH-cCCeEEeE
Q 030910 105 KIAVACAFKELKYLDRIEGLVFSENKASQRVMEK-AGFIREGL 146 (169)
Q Consensus 105 ~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~-~Gf~~~~~ 146 (169)
+.+++|.+....++..+.+.|..- .+|++||++ +||+....
T Consensus 12 ~~~~~~~~~~i~~l~Hv~l~V~Dl-e~s~~FY~~vLG~~~~~~ 53 (286)
T PLN02300 12 EDLLEWPKKDKRRMLHVVYRVGDL-DRTIKFYTECLGMKLLRK 53 (286)
T ss_pred hhhhcCCccccceEEEEEEEeCCH-HHHHHHHHHhcCCEEEEe
Confidence 345555422221556666665533 489999976 89988654
No 196
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=36.12 E-value=88 Score=19.60 Aligned_cols=29 Identities=10% Similarity=0.032 Sum_probs=21.5
Q ss_pred CceeEEEEeeccCHHHHHHHHH-cCCeEEeE
Q 030910 117 YLDRIEGLVFSENKASQRVMEK-AGFIREGL 146 (169)
Q Consensus 117 ~~~~v~~~~~~~N~~a~~~y~~-~Gf~~~~~ 146 (169)
++..|.+.|. +=.+|++||+. +||+....
T Consensus 9 ~l~Hi~l~v~-Dl~~a~~FY~~~LGl~~~~~ 38 (154)
T cd07237 9 GLGHVVLATP-DPDEAHAFYRDVLGFRLSDE 38 (154)
T ss_pred ccCEEEEEeC-CHHHHHHHHHHccCCEEEEE
Confidence 6777777665 34688899986 99987554
No 197
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=35.89 E-value=78 Score=18.47 Aligned_cols=16 Identities=25% Similarity=0.331 Sum_probs=13.0
Q ss_pred HHHHHHHHH-cCCeEEe
Q 030910 130 KASQRVMEK-AGFIREG 145 (169)
Q Consensus 130 ~~a~~~y~~-~Gf~~~~ 145 (169)
.+|.+||++ +||+...
T Consensus 12 ~~s~~FY~~~lG~~~~~ 28 (125)
T cd07264 12 EKTLEFYERAFGFERRF 28 (125)
T ss_pred HHHHHHHHHhhCCeEEe
Confidence 488999987 7998754
No 198
>PRK12303 tumor necrosis factor alpha-inducing protein; Reviewed
Probab=35.74 E-value=94 Score=19.08 Aligned_cols=48 Identities=15% Similarity=0.235 Sum_probs=34.4
Q ss_pred ChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEe
Q 030910 98 GVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREG 145 (169)
Q Consensus 98 G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~ 145 (169)
.+-.+++-++.+-....+.+++++-+.+.|.|....++.+..||...+
T Consensus 104 kitnemfiqmtqpiydslmnvdrlgiyinpnneevfalvrargfdkda 151 (192)
T PRK12303 104 KITNEMFIQMTQPIYDSLMNVDRLGIYINPNNEEVFALVRARGFDKDA 151 (192)
T ss_pred HHhHHHHHHhccHHHHHhhcchheeeeeCCCcHHHHHHHHHhcCCHHH
Confidence 344444444444444443378889999999999999999999997654
No 199
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=35.73 E-value=47 Score=18.89 Aligned_cols=18 Identities=17% Similarity=0.060 Sum_probs=15.0
Q ss_pred HHHHHHHHH-cCCeEEeEE
Q 030910 130 KASQRVMEK-AGFIREGLL 147 (169)
Q Consensus 130 ~~a~~~y~~-~Gf~~~~~~ 147 (169)
.+|.+||++ +||+.....
T Consensus 10 ~~s~~FY~~~lg~~~~~~~ 28 (112)
T cd08349 10 ERSLAFYRDVLGFEVDWEH 28 (112)
T ss_pred HHHHHHHHhccCeEEEEEc
Confidence 488999999 999987654
No 200
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=35.48 E-value=99 Score=18.41 Aligned_cols=29 Identities=17% Similarity=0.052 Sum_probs=19.2
Q ss_pred eeEEEEeeccCHHHHHHHHH-cCCeEEeEEe
Q 030910 119 DRIEGLVFSENKASQRVMEK-AGFIREGLLR 148 (169)
Q Consensus 119 ~~v~~~~~~~N~~a~~~y~~-~Gf~~~~~~~ 148 (169)
..+.+.|..- .++.+||++ +||+......
T Consensus 3 ~hv~l~v~D~-~~s~~FY~~~lG~~~~~~~~ 32 (134)
T cd08348 3 SHVVLYVRDL-EAMVRFYRDVLGFTVTDRGP 32 (134)
T ss_pred eEEEEEecCH-HHHHHHHHHhcCCEEEeecc
Confidence 4455544332 478899987 9999876543
No 201
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=34.81 E-value=72 Score=22.21 Aligned_cols=38 Identities=24% Similarity=0.204 Sum_probs=32.5
Q ss_pred eCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeecc
Q 030910 90 ISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSE 128 (169)
Q Consensus 90 v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~ 128 (169)
+-|.|-..|+++..++...+|+..++ |-+.|.+.....
T Consensus 151 ~vPnYNvMGvAKAaLEasvRyLA~dl-G~~gIRVNaISA 188 (259)
T COG0623 151 VVPNYNVMGVAKAALEASVRYLAADL-GKEGIRVNAISA 188 (259)
T ss_pred ecCCCchhHHHHHHHHHHHHHHHHHh-CccCeEEeeecc
Confidence 67999999999999999999999888 877777655443
No 202
>PTZ00129 40S ribosomal protein S14; Provisional
Probab=34.66 E-value=1.2e+02 Score=19.30 Aligned_cols=48 Identities=21% Similarity=0.151 Sum_probs=36.2
Q ss_pred ChHH-HHHHHHHHHHHHhcCCceeEEEEe-----------eccCHHHHHHHHHcCCeEEeEE
Q 030910 98 GVAT-EAVKIAVACAFKELKYLDRIEGLV-----------FSENKASQRVMEKAGFIREGLL 147 (169)
Q Consensus 98 G~g~-~l~~~~~~~~~~~~~~~~~v~~~~-----------~~~N~~a~~~y~~~Gf~~~~~~ 147 (169)
-++. .+.+.+...+ .+. |+..|.+.+ -+...+|++-+.+.|++.....
T Consensus 71 pyAAq~aa~~~a~k~-~~~-Gi~~v~V~vr~~gg~~~kg~GpGr~~airaL~~~glkI~~I~ 130 (149)
T PTZ00129 71 PYAAMMAAQDVAARC-KEL-GINALHIKLRATGGVRTKTPGPGAQAALRALARAGLKIGRIE 130 (149)
T ss_pred HHHHHHHHHHHHHHH-HHc-CCeEEEEEEEecCCCCCCCCCCCHHHHHHHHHHCCCEEEEEE
Confidence 3444 4555566666 456 999999998 4677899999999999987664
No 203
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=34.47 E-value=78 Score=16.87 Aligned_cols=61 Identities=15% Similarity=0.013 Sum_probs=42.1
Q ss_pred HHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeEEeeeeecCCEEeEeEEEEeeccC
Q 030910 105 KIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGLLRKYFFVKGKSVDIVVFSTVEAD 169 (169)
Q Consensus 105 ~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~~~~~~~~~g~~~d~~~~~~~~~~ 169 (169)
..+..|+++.+ +-+.|.+...|.+.-|..+| .|=+.+|+.-.. .-+|+..=.+.|.++..|
T Consensus 3 ~klq~yLr~~f-~n~~i~v~~rpk~~dsaEV~--~g~EfiGvi~~D-edeGe~Sy~f~M~ILd~D 63 (63)
T PF11324_consen 3 KKLQAYLRRTF-GNPGITVKARPKKDDSAEVY--IGDEFIGVIYRD-EDEGEVSYNFQMAILDED 63 (63)
T ss_pred HHHHHHHHHHh-CCCceEEEcCCCCCCceEEE--eCCEEEEEEEee-cCCCcEEEEEEEEEecCC
Confidence 45777887888 88889988888776665555 345666765433 245777777777777654
No 204
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=34.18 E-value=76 Score=18.47 Aligned_cols=29 Identities=17% Similarity=0.143 Sum_probs=20.4
Q ss_pred CceeEEEEeeccCHHHHHHHHH-cCCeEEeE
Q 030910 117 YLDRIEGLVFSENKASQRVMEK-AGFIREGL 146 (169)
Q Consensus 117 ~~~~v~~~~~~~N~~a~~~y~~-~Gf~~~~~ 146 (169)
++..+.+.|.. =.++.+||.+ +||+....
T Consensus 4 ~i~hi~l~v~d-~~~~~~Fy~~~lG~~~~~~ 33 (121)
T cd07266 4 RLGHVELRVTD-LEKSREFYVDVLGLVETEE 33 (121)
T ss_pred eeeEEEEEcCC-HHHHHHHHHhccCCEEecc
Confidence 45666666642 3488999987 99987644
No 205
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=34.18 E-value=79 Score=18.15 Aligned_cols=31 Identities=13% Similarity=-0.097 Sum_probs=22.1
Q ss_pred CceeEEEEeeccCHHHHHHHHH-cCCeEEeEEe
Q 030910 117 YLDRIEGLVFSENKASQRVMEK-AGFIREGLLR 148 (169)
Q Consensus 117 ~~~~v~~~~~~~N~~a~~~y~~-~Gf~~~~~~~ 148 (169)
++..+.+.|.. =.+|++||.. +||+......
T Consensus 2 ~l~hv~l~v~d-l~~s~~FY~~~LG~~~~~~~~ 33 (138)
T COG0346 2 GIHHVTLAVPD-LEASIDFYTDVLGLRLVKDTV 33 (138)
T ss_pred ceEEEEEeeCC-HhHhHHHHHhhcCCeeeeecc
Confidence 44566665654 3588999997 9999876543
No 206
>COG1437 CyaB Adenylate cyclase, class 2 (thermophilic) [Nucleotide transport and metabolism]
Probab=34.11 E-value=1.1e+02 Score=20.21 Aligned_cols=31 Identities=19% Similarity=0.344 Sum_probs=21.8
Q ss_pred eeEEEEeeccCHHHHHHHHHcCCeEEeEEeee
Q 030910 119 DRIEGLVFSENKASQRVMEKAGFIREGLLRKY 150 (169)
Q Consensus 119 ~~v~~~~~~~N~~a~~~y~~~Gf~~~~~~~~~ 150 (169)
..+.+.+. +=..+..+++++||...+..++.
T Consensus 79 ~E~E~~v~-D~~~~~~il~~LGF~~~~~VkK~ 109 (178)
T COG1437 79 EEIEIEVS-DVEKALEILKRLGFKEVAVVKKT 109 (178)
T ss_pred eeEEEEeC-CHHHHHHHHHHcCCceeeEEEEE
Confidence 44555555 33467899999999988876544
No 207
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=32.84 E-value=1e+02 Score=17.76 Aligned_cols=28 Identities=11% Similarity=0.063 Sum_probs=20.4
Q ss_pred CceeEEEEeeccCHHHHHHHH-HcCCeEEe
Q 030910 117 YLDRIEGLVFSENKASQRVME-KAGFIREG 145 (169)
Q Consensus 117 ~~~~v~~~~~~~N~~a~~~y~-~~Gf~~~~ 145 (169)
++..+.+.|. +=.+|.+||. .+||+...
T Consensus 3 ~~~hi~l~v~-d~~~a~~fy~~~lG~~~~~ 31 (125)
T cd08352 3 GIHHVAIICS-DYEKSKEFYVEILGFKVIR 31 (125)
T ss_pred ccceEEEEcC-CHHHHHHHHHHhcCCEEee
Confidence 5677777774 3358899998 59998754
No 208
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.31 E-value=81 Score=16.44 Aligned_cols=28 Identities=14% Similarity=-0.060 Sum_probs=17.4
Q ss_pred ceeEEEEeeccCH-HHHHHHHHcCCeEEe
Q 030910 118 LDRIEGLVFSENK-ASQRVMEKAGFIREG 145 (169)
Q Consensus 118 ~~~v~~~~~~~N~-~a~~~y~~~Gf~~~~ 145 (169)
...+.+.+...+. ...+..++.||+...
T Consensus 42 ~~~v~i~v~~~~~~~~~~~L~~~G~~v~~ 70 (72)
T cd04883 42 NKILVFRVQTMNPRPIIEDLRRAGYEVLW 70 (72)
T ss_pred eEEEEEEEecCCHHHHHHHHHHCCCeeeC
Confidence 3345555554455 667777888887653
No 209
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=32.16 E-value=94 Score=19.62 Aligned_cols=29 Identities=21% Similarity=0.103 Sum_probs=20.2
Q ss_pred CceeEEEEeeccCHHHHHHHHH-cCCeEEeE
Q 030910 117 YLDRIEGLVFSENKASQRVMEK-AGFIREGL 146 (169)
Q Consensus 117 ~~~~v~~~~~~~N~~a~~~y~~-~Gf~~~~~ 146 (169)
++..+.+.|.. =.+|++||+. +||+....
T Consensus 3 ~l~Hv~l~V~D-l~~s~~FY~~vLGl~~~~~ 32 (161)
T cd07256 3 RLDHFNLRVPD-VDAGLAYYRDELGFRVSEY 32 (161)
T ss_pred eEEEEEEecCC-HHHHHHHHHhccCCEEEEE
Confidence 45666666643 3588999987 89987543
No 210
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=31.90 E-value=56 Score=18.68 Aligned_cols=18 Identities=11% Similarity=0.097 Sum_probs=14.9
Q ss_pred HHHHHHHHH-cCCeEEeEE
Q 030910 130 KASQRVMEK-AGFIREGLL 147 (169)
Q Consensus 130 ~~a~~~y~~-~Gf~~~~~~ 147 (169)
.++.+||.+ +||+.....
T Consensus 10 ~~~~~fY~~~lG~~~~~~~ 28 (119)
T cd07263 10 DKALAFYTEKLGFEVREDV 28 (119)
T ss_pred HHHHHHHHhccCeEEEEee
Confidence 478899998 999987664
No 211
>PRK11478 putative lyase; Provisional
Probab=31.78 E-value=68 Score=18.92 Aligned_cols=28 Identities=14% Similarity=0.144 Sum_probs=18.6
Q ss_pred CceeEEEEeeccCHHHHHHHH-HcCCeEEe
Q 030910 117 YLDRIEGLVFSENKASQRVME-KAGFIREG 145 (169)
Q Consensus 117 ~~~~v~~~~~~~N~~a~~~y~-~~Gf~~~~ 145 (169)
++..+.+.|. +=.+|.+||. .+||+...
T Consensus 6 ~i~hv~l~v~-D~~~a~~FY~~~LG~~~~~ 34 (129)
T PRK11478 6 QVHHIAIIAT-DYAVSKAFYCDILGFTLQS 34 (129)
T ss_pred eecEEEEEcC-CHHHHHHHHHHHhCCEecc
Confidence 3455666553 3358899996 58999753
No 212
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=31.29 E-value=92 Score=16.74 Aligned_cols=21 Identities=24% Similarity=0.196 Sum_probs=15.8
Q ss_pred HHHHHHHHHcCCeEEeEEeee
Q 030910 130 KASQRVMEKAGFIREGLLRKY 150 (169)
Q Consensus 130 ~~a~~~y~~~Gf~~~~~~~~~ 150 (169)
.-.++..++.||..+...=.+
T Consensus 10 ke~ik~Le~~Gf~~vrqkGSH 30 (66)
T COG1724 10 KEVIKALEKDGFQLVRQKGSH 30 (66)
T ss_pred HHHHHHHHhCCcEEEEeecce
Confidence 356889999999988765333
No 213
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=30.83 E-value=86 Score=18.13 Aligned_cols=17 Identities=12% Similarity=-0.060 Sum_probs=13.1
Q ss_pred HHHHHHHH-HcCCeEEeE
Q 030910 130 KASQRVME-KAGFIREGL 146 (169)
Q Consensus 130 ~~a~~~y~-~~Gf~~~~~ 146 (169)
.+|..||. .+||+....
T Consensus 13 ~~s~~FY~~~lG~~~~~~ 30 (119)
T cd08359 13 AETADFYVRHFGFTVVFD 30 (119)
T ss_pred HHHHHHHHHhhCcEEEec
Confidence 37899996 499987654
No 214
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=30.52 E-value=94 Score=18.13 Aligned_cols=27 Identities=11% Similarity=0.007 Sum_probs=17.7
Q ss_pred eEEEEeeccCHHHHHHHHH----cCCeEEeEE
Q 030910 120 RIEGLVFSENKASQRVMEK----AGFIREGLL 147 (169)
Q Consensus 120 ~v~~~~~~~N~~a~~~y~~----~Gf~~~~~~ 147 (169)
.+.+.| ++=.+|.+||++ +||......
T Consensus 3 hv~l~v-~d~~~s~~FY~~~f~~lg~~~~~~~ 33 (123)
T cd07262 3 HVTLGV-NDLERARAFYDAVLAPLGIKRVMED 33 (123)
T ss_pred EEEEec-CcHHHHHHHHHHHHhhcCceEEeec
Confidence 344444 233478999998 599876543
No 215
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=30.49 E-value=76 Score=18.86 Aligned_cols=28 Identities=7% Similarity=-0.020 Sum_probs=18.5
Q ss_pred ceeEEEEeeccCHHHHHHHHH-cCCeEEeE
Q 030910 118 LDRIEGLVFSENKASQRVMEK-AGFIREGL 146 (169)
Q Consensus 118 ~~~v~~~~~~~N~~a~~~y~~-~Gf~~~~~ 146 (169)
+..+.+.|. +=.+|.+||++ +||+....
T Consensus 7 l~~v~l~v~-d~~~s~~FY~~vLG~~~~~~ 35 (124)
T cd08361 7 IAYVRLGTR-DLAGATRFATDILGLQVAER 35 (124)
T ss_pred eeEEEEeeC-CHHHHHHHHHhccCceeccC
Confidence 445555554 22488999987 79987543
No 216
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=30.02 E-value=88 Score=21.80 Aligned_cols=44 Identities=18% Similarity=0.061 Sum_probs=34.9
Q ss_pred cCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCe
Q 030910 95 WGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFI 142 (169)
Q Consensus 95 rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~ 142 (169)
|| |+|+.-+.+.+.++.... |-+-+.+..++.| +.++.-...+.
T Consensus 10 kG-GvG~TTltAnLA~aL~~~-G~~VlaID~dpqN--~Lrlhfg~~~~ 53 (243)
T PF06564_consen 10 KG-GVGKTTLTANLAWALARL-GESVLAIDLDPQN--LLRLHFGLPLD 53 (243)
T ss_pred CC-CCCHHHHHHHHHHHHHHC-CCcEEEEeCCcHH--HHHHhcCCCCc
Confidence 44 999999999999999998 8888888898888 55555555543
No 217
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=29.74 E-value=1.3e+02 Score=20.30 Aligned_cols=24 Identities=25% Similarity=0.138 Sum_probs=17.7
Q ss_pred EEeeccCHHHHHHHHHcCCeEEeE
Q 030910 123 GLVFSENKASQRVMEKAGFIREGL 146 (169)
Q Consensus 123 ~~~~~~N~~a~~~y~~~Gf~~~~~ 146 (169)
..+...|..+.++|+..|+...-.
T Consensus 43 ~~~nv~N~~s~~~~~~~G~~~i~l 66 (233)
T PF01136_consen 43 YSLNVFNSESARFLKELGASRITL 66 (233)
T ss_pred cCccCCCHHHHHHHHHcCCCEEEE
Confidence 344557888999999998876543
No 218
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=29.60 E-value=1.3e+02 Score=18.14 Aligned_cols=30 Identities=17% Similarity=0.161 Sum_probs=20.1
Q ss_pred CceeEEEEeeccCHHHHHHHHH-cCCeEEeEE
Q 030910 117 YLDRIEGLVFSENKASQRVMEK-AGFIREGLL 147 (169)
Q Consensus 117 ~~~~v~~~~~~~N~~a~~~y~~-~Gf~~~~~~ 147 (169)
.+..+.+.|.. =.+|++||++ +||+.....
T Consensus 3 ~l~hi~l~v~d-l~~s~~FY~~vlGl~~~~~~ 33 (134)
T cd08360 3 RLGHVVLFVPD-VEAAEAFYRDRLGFRVSDRF 33 (134)
T ss_pred eeeEEEEEcCC-HHHHHHHHHHhcCCEEEEEe
Confidence 34566666642 3488999975 799876553
No 219
>PF06559 DCD: 2'-deoxycytidine 5'-triphosphate deaminase (DCD); InterPro: IPR010550 This family consists of several bacterial 2'-deoxycytidine 5'-triphosphate deaminase proteins (3.5.4.13 from EC).; GO: 0008829 dCTP deaminase activity; PDB: 2R9Q_C.
Probab=29.45 E-value=29 Score=25.37 Aligned_cols=35 Identities=23% Similarity=0.377 Sum_probs=13.8
Q ss_pred ECCeEEEEEEEEeCCCCCCcEEEEEEEeCCCccCcCh
Q 030910 63 VKDRPIGSIYVMPGIGKDERRGEIGYAISAKYWGKGV 99 (169)
Q Consensus 63 ~~~~~vG~~~~~~~~~~~~~~~~i~~~v~~~~rg~G~ 99 (169)
..|++||=..+.+....+.. --|-.+.+.|||||+
T Consensus 322 ehGQ~vgrLvyE~m~~~P~~--lYG~~~gSnYq~QgL 356 (364)
T PF06559_consen 322 EHGQIVGRLVYERMAERPER--LYGAGIGSNYQGQGL 356 (364)
T ss_dssp ETT-EEEEEEEEEBSS------TTSS-----------
T ss_pred eCCcEEEEEEehhhccCccc--cccccccccchhhhh
Confidence 38999999999988765421 113347889999885
No 220
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=29.43 E-value=1.7e+02 Score=19.32 Aligned_cols=75 Identities=8% Similarity=0.055 Sum_probs=52.5
Q ss_pred CCeEEEEEEEEeCCCCC-------------------------CcEEEEEEEeCCCccCcChHHHHHHHHHHHHHHhcCCc
Q 030910 64 KDRPIGSIYVMPGIGKD-------------------------ERRGEIGYAISAKYWGKGVATEAVKIAVACAFKELKYL 118 (169)
Q Consensus 64 ~~~~vG~~~~~~~~~~~-------------------------~~~~~i~~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~ 118 (169)
+|++++.++++.-...+ ....|+|=. ...+.|.++.++..+..++... |+
T Consensus 43 ~g~l~aa~G~r~A~~~~LFlEqYLd~piE~~l~~~~g~~v~R~~IvEvGnL---As~~~g~~~~l~~~l~~~L~~~--g~ 117 (179)
T PF12261_consen 43 DGELVAAAGLRFASQEPLFLEQYLDQPIEQLLSRRFGRPVSRSQIVEVGNL---ASFSPGAARLLFAALAQLLAQQ--GF 117 (179)
T ss_pred CCCEEEEEeecccCCCCcchhhhcCCcHHHHHHhhcCCCcchhheeEeech---hhcCcccHHHHHHHHHHHHHHC--CC
Confidence 89999999999876321 011344321 2235788999999999988554 88
Q ss_pred eeEEEEeeccCHHHHHHHHHcCCeEEeE
Q 030910 119 DRIEGLVFSENKASQRVMEKAGFIREGL 146 (169)
Q Consensus 119 ~~v~~~~~~~N~~a~~~y~~~Gf~~~~~ 146 (169)
+.+.. ..+..-++++.|+|....-.
T Consensus 118 ~w~vf---TaT~~lr~~~~rlgl~~~~L 142 (179)
T PF12261_consen 118 EWVVF---TATRQLRNLFRRLGLPPTVL 142 (179)
T ss_pred CEEEE---eCCHHHHHHHHHcCCCceec
Confidence 76654 44577899999999987644
No 221
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=29.41 E-value=87 Score=18.29 Aligned_cols=20 Identities=15% Similarity=0.195 Sum_probs=16.0
Q ss_pred cCHHHHHHHH-HcCCeEEeEE
Q 030910 128 ENKASQRVME-KAGFIREGLL 147 (169)
Q Consensus 128 ~N~~a~~~y~-~~Gf~~~~~~ 147 (169)
+=.+|.+||+ .+||+.....
T Consensus 9 d~~~a~~FY~~~lG~~~~~~~ 29 (122)
T cd08355 9 DAAAAIDWLTDAFGFEERLVV 29 (122)
T ss_pred CHHHHHHHHHHhcCCEEEEEE
Confidence 3358999998 9999987654
No 222
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=29.38 E-value=63 Score=18.87 Aligned_cols=28 Identities=18% Similarity=-0.023 Sum_probs=19.5
Q ss_pred eeEEEEeeccCHHHHHHHHH-cCCeEEeEE
Q 030910 119 DRIEGLVFSENKASQRVMEK-AGFIREGLL 147 (169)
Q Consensus 119 ~~v~~~~~~~N~~a~~~y~~-~Gf~~~~~~ 147 (169)
..|.+.|. +=.++.+||++ +||+.....
T Consensus 2 ~hv~l~v~-d~~~~~~fy~~~lG~~~~~~~ 30 (128)
T cd07249 2 DHIGIAVP-DLEAAIKFYRDVLGVGPWEEE 30 (128)
T ss_pred cEEEEEeC-CHHHHHHHHHHhhCCCCcccc
Confidence 35666664 33488999987 999986543
No 223
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=29.07 E-value=2.2e+02 Score=21.16 Aligned_cols=24 Identities=13% Similarity=0.130 Sum_probs=19.6
Q ss_pred EEEEeeccCHHHHHHHHHcCCeEE
Q 030910 121 IEGLVFSENKASQRVMEKAGFIRE 144 (169)
Q Consensus 121 v~~~~~~~N~~a~~~y~~~Gf~~~ 144 (169)
+...+...|....+||.+.|.+.+
T Consensus 118 ~S~q~~v~N~~~~~f~~~~G~~rv 141 (347)
T COG0826 118 VSTQANVTNAETAKFWKELGAKRV 141 (347)
T ss_pred EeeeEecCCHHHHHHHHHcCCEEE
Confidence 456677789999999999997654
No 224
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=28.84 E-value=82 Score=21.67 Aligned_cols=35 Identities=11% Similarity=0.251 Sum_probs=29.1
Q ss_pred CCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeecc
Q 030910 92 AKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSE 128 (169)
Q Consensus 92 ~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~ 128 (169)
|...|.--|...+..++++| .+. |++.+++.+...
T Consensus 20 ~~~~GH~~G~~~~~~v~~~c-~~~-GI~~lT~yaFSt 54 (226)
T TIGR00055 20 PRAYGHKAGVKSLRRILRWC-ANL-GVECLTLYAFST 54 (226)
T ss_pred ChhHhHHHHHHHHHHHHHHH-HHc-CCCEEEEEEeeh
Confidence 55667788999999999999 555 999999988764
No 225
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=28.41 E-value=84 Score=21.68 Aligned_cols=35 Identities=20% Similarity=0.163 Sum_probs=29.0
Q ss_pred CCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeecc
Q 030910 92 AKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSE 128 (169)
Q Consensus 92 ~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~ 128 (169)
|...|.--|...+..++++| .++ |++.+++.+...
T Consensus 27 ~~~~GH~~G~~~~~~i~~~c-~~~-GI~~lT~YaFS~ 61 (230)
T PRK14837 27 SFFEGHKEGLKRAKEIVKHS-LKL-GIKYLSLYVFST 61 (230)
T ss_pred chhhhHHHHHHHHHHHHHHH-HHc-CCCEEEEEEeeh
Confidence 55667778999999999999 555 999999888764
No 226
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=28.34 E-value=1.3e+02 Score=17.52 Aligned_cols=30 Identities=10% Similarity=-0.064 Sum_probs=21.1
Q ss_pred CceeEEEEeeccCHHHHHHHHH-cCCeEEeEE
Q 030910 117 YLDRIEGLVFSENKASQRVMEK-AGFIREGLL 147 (169)
Q Consensus 117 ~~~~v~~~~~~~N~~a~~~y~~-~Gf~~~~~~ 147 (169)
.+..|.+.|..- .++.+||.+ +||+.....
T Consensus 2 ~i~hi~l~v~d~-~~~~~Fy~~~lG~~~~~~~ 32 (125)
T cd07255 2 RIGAVTLRVADL-ERSLAFYQDVLGLEVLERT 32 (125)
T ss_pred EEEEEEEEECCH-HHHHHHHHhccCcEEEEcC
Confidence 355666666433 478999986 899987664
No 227
>PF07927 YcfA: YcfA-like protein; InterPro: IPR012933 This entry represents UPF0395, which contains viral, archaeal and bacterial proteins. It includes YncN of Escherichia coli K12. Most of these proteins are hypothetical proteins of unknown function. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1WHZ_A.
Probab=28.30 E-value=84 Score=15.67 Aligned_cols=15 Identities=33% Similarity=0.430 Sum_probs=11.5
Q ss_pred HHHHHHHcCCeEEeE
Q 030910 132 SQRVMEKAGFIREGL 146 (169)
Q Consensus 132 a~~~y~~~Gf~~~~~ 146 (169)
..++++++||.....
T Consensus 4 l~k~L~~~G~~~~r~ 18 (56)
T PF07927_consen 4 LIKLLEKAGFEEVRQ 18 (56)
T ss_dssp HHHHHHHTT-EEEEE
T ss_pred HHHHHHHCCCEEecC
Confidence 568999999998854
No 228
>PRK14831 undecaprenyl pyrophosphate synthase; Provisional
Probab=27.22 E-value=83 Score=22.00 Aligned_cols=34 Identities=18% Similarity=0.333 Sum_probs=28.6
Q ss_pred CCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeec
Q 030910 92 AKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFS 127 (169)
Q Consensus 92 ~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~ 127 (169)
+...|.-.|...+..++.++. +. |++.|++.+..
T Consensus 41 ~~~~GH~~G~~~l~~i~~~c~-~~-GI~~vT~yaFS 74 (249)
T PRK14831 41 PRIMGHRRGVDALKDLLRCCK-DW-GIGALTAYAFS 74 (249)
T ss_pred chhhhHHHHHHHHHHHHHHHH-Hc-CCCEEEEeecc
Confidence 445677789999999999995 55 99999999987
No 229
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=27.20 E-value=80 Score=17.41 Aligned_cols=21 Identities=19% Similarity=0.010 Sum_probs=16.8
Q ss_pred cCHHHHHHHHH-cCCeEEeEEe
Q 030910 128 ENKASQRVMEK-AGFIREGLLR 148 (169)
Q Consensus 128 ~N~~a~~~y~~-~Gf~~~~~~~ 148 (169)
+-..+.+||.+ +||+......
T Consensus 8 d~~~~~~fy~~~lg~~~~~~~~ 29 (112)
T cd06587 8 DLEAAVAFYEEVLGFEVLFRNG 29 (112)
T ss_pred CHHHHHHHHHhccCCEEEEeec
Confidence 34688999998 9999887763
No 230
>PF12162 STAT1_TAZ2bind: STAT1 TAZ2 binding domain; InterPro: IPR022752 This entry represents the C-terminal domain of STAT1, which selectively binds the TAZ2 domain of CRB (CREB-binding protein) []. This group of eukaryotic proteins is approximately 20 amino acids in length, and is found in association with PF02865 from PFAM, PF00017 from PFAM, PF01017 from PFAM, PF02864 from PFAM. By binding to CRB, it becomes a transcriptional activator and can initiate transcription of certain genes. ; GO: 0003700 sequence-specific DNA binding transcription factor activity; PDB: 2KA6_B.
Probab=26.66 E-value=17 Score=14.88 Aligned_cols=15 Identities=20% Similarity=0.386 Sum_probs=8.2
Q ss_pred EeeCCCCChhhHHhh
Q 030910 9 LRPFKISDVDDFMGW 23 (169)
Q Consensus 9 ir~~~~~d~~~l~~~ 23 (169)
+-|++++|+..+.++
T Consensus 7 mmPMSPddy~~l~~~ 21 (23)
T PF12162_consen 7 MMPMSPDDYDELERM 21 (23)
T ss_dssp ---S-HHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHh
Confidence 457788888777664
No 231
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.63 E-value=1.4e+02 Score=17.38 Aligned_cols=34 Identities=18% Similarity=0.371 Sum_probs=22.8
Q ss_pred CcCChHHHHHHHHHhhccCCeEEEEEECCeEEEE
Q 030910 37 TFTFRDDAVAFLKEVIKSHPWYRAICVKDRPIGS 70 (169)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~ 70 (169)
..+..+...++..+..+++-.+-++..++++||=
T Consensus 54 n~~~e~~~~~~aekI~~dey~YPlivvedeiVae 87 (106)
T COG4837 54 NPPLEDHDLQFAEKIEQDEYFYPLIVVEDEIVAE 87 (106)
T ss_pred CCccHHHHHHHHHHHhcccccceEEEEcceEeec
Confidence 3445566677777777666566666678888874
No 232
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=26.12 E-value=1.7e+02 Score=19.17 Aligned_cols=32 Identities=9% Similarity=0.195 Sum_probs=19.0
Q ss_pred ChHHHHHHHHHhhccCCeEEEEEECCeEEEEEE
Q 030910 40 FRDDAVAFLKEVIKSHPWYRAICVKDRPIGSIY 72 (169)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~ 72 (169)
+++...+-+...+.. ....++..+|++||.+.
T Consensus 144 s~~~~l~vI~~LL~~-~~AVlV~e~G~~vGIIT 175 (187)
T COG3620 144 SPDESLNVISQLLEE-HPAVLVVENGKVVGIIT 175 (187)
T ss_pred CCCCCHHHHHHHHhh-CCeEEEEeCCceEEEEe
Confidence 444444455544443 34455557999999875
No 233
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=25.96 E-value=2.1e+02 Score=19.21 Aligned_cols=50 Identities=18% Similarity=0.151 Sum_probs=36.0
Q ss_pred EEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeEEe
Q 030910 88 YAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGLLR 148 (169)
Q Consensus 88 ~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~~~ 148 (169)
+.-.+++|.-|+|.+++ +.+ |+++|.+-+. |+.-+.-.+..|-....+.+
T Consensus 120 lg~~~D~R~ygigAqIL--------~dL-GI~~irLLtn--np~K~~~l~~~Gi~vverv~ 169 (193)
T COG0807 120 LGFPADERDYGIGAQIL--------KDL-GIKKIRLLTN--NPRKIYGLEGFGINVVERVP 169 (193)
T ss_pred hcCCchHHHHHHHHHHH--------HHc-CCcEEEEecC--ChHHHHHHHhCCceEEEEee
Confidence 44567888889888843 345 8898886554 77777778888877766654
No 234
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=25.95 E-value=2.2e+02 Score=19.84 Aligned_cols=47 Identities=13% Similarity=-0.043 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeEEeee
Q 030910 100 ATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGLLRKY 150 (169)
Q Consensus 100 g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~~~~~ 150 (169)
|+-|+.++.+.+.+. ++.++.+.++.. .-...-+++|++.+=+-.++
T Consensus 27 GkpmI~rV~e~a~~s--~~~rvvVATDde--~I~~av~~~G~~avmT~~~h 73 (247)
T COG1212 27 GKPMIVRVAERALKS--GADRVVVATDDE--RIAEAVQAFGGEAVMTSKDH 73 (247)
T ss_pred CchHHHHHHHHHHHc--CCCeEEEEcCCH--HHHHHHHHhCCEEEecCCCC
Confidence 678899999998555 899998766644 45567788899887665444
No 235
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=25.84 E-value=1.2e+02 Score=22.02 Aligned_cols=33 Identities=15% Similarity=0.114 Sum_probs=26.8
Q ss_pred EEeCCCccCcChHHHHHHHHHHHHHHhcCCceeE
Q 030910 88 YAISAKYWGKGVATEAVKIAVACAFKELKYLDRI 121 (169)
Q Consensus 88 ~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v 121 (169)
+.|+..++..|+|.++...+.+.+|..+ ...-.
T Consensus 256 viV~Ea~~~~g~gaei~A~i~e~~f~~L-dAPi~ 288 (324)
T COG0022 256 VIVHEAPKTGGIGAEIAALIAEEAFDYL-DAPIL 288 (324)
T ss_pred EEEEeccccCChHHHHHHHHHHHHHHhh-cCchh
Confidence 3578999999999999999999998776 54433
No 236
>PRK10150 beta-D-glucuronidase; Provisional
Probab=25.78 E-value=2.9e+02 Score=22.16 Aligned_cols=53 Identities=9% Similarity=0.032 Sum_probs=41.7
Q ss_pred ccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeEEe
Q 030910 94 YWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGLLR 148 (169)
Q Consensus 94 ~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~~~ 148 (169)
..|.++..+.+..-++.+ ++. |++.|.+...+.......+.-++|+-+..+.+
T Consensus 305 ~~G~a~~~~~~~~d~~l~-K~~-G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p 357 (604)
T PRK10150 305 IRGKGLDEVLNVHDHNLM-KWI-GANSFRTSHYPYSEEMLDLADRHGIVVIDETP 357 (604)
T ss_pred ccCCcCCHHHHHHHHHHH-HHC-CCCEEEeccCCCCHHHHHHHHhcCcEEEEecc
Confidence 355566677777777777 566 99999997777777888888899999887764
No 237
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=25.73 E-value=1.5e+02 Score=17.30 Aligned_cols=30 Identities=20% Similarity=0.143 Sum_probs=20.6
Q ss_pred CceeEEEEeeccCHHHHHHHHH-cCCeEEeEE
Q 030910 117 YLDRIEGLVFSENKASQRVMEK-AGFIREGLL 147 (169)
Q Consensus 117 ~~~~v~~~~~~~N~~a~~~y~~-~Gf~~~~~~ 147 (169)
++..+.+.|.. =.+|.+||.+ +||+.....
T Consensus 6 ~i~hv~l~v~d-l~~a~~FY~~~lG~~~~~~~ 36 (121)
T cd09013 6 HLAHVELLTPK-PEESLWFFTDVLGLEETGRE 36 (121)
T ss_pred EeeEEEEEeCC-HHHHHHHHHhCcCCEEEeec
Confidence 45566665542 2588999987 699887654
No 238
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=25.63 E-value=1.6e+02 Score=17.60 Aligned_cols=17 Identities=18% Similarity=0.194 Sum_probs=13.4
Q ss_pred HHHHHHHHH-cCCeEEeE
Q 030910 130 KASQRVMEK-AGFIREGL 146 (169)
Q Consensus 130 ~~a~~~y~~-~Gf~~~~~ 146 (169)
.+|++||++ +||+....
T Consensus 11 ~~a~~Fy~~~lG~~~~~~ 28 (131)
T cd08343 11 AATAAFYTEVLGFRVSDR 28 (131)
T ss_pred HHHHHHHHhcCCCEEEEE
Confidence 478999986 89997644
No 239
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=25.56 E-value=96 Score=15.12 Aligned_cols=33 Identities=9% Similarity=0.082 Sum_probs=20.8
Q ss_pred CChHHHHHHHHHhhccCCeEEEEE-ECCeEEEEEEEE
Q 030910 39 TFRDDAVAFLKEVIKSHPWYRAIC-VKDRPIGSIYVM 74 (169)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vG~~~~~ 74 (169)
.+..++.+.+.+. ....+.+. .+++++|.+...
T Consensus 16 ~~l~~~~~~~~~~---~~~~~~V~d~~~~~~G~is~~ 49 (57)
T PF00571_consen 16 DSLEEALEIMRKN---GISRLPVVDEDGKLVGIISRS 49 (57)
T ss_dssp SBHHHHHHHHHHH---TSSEEEEESTTSBEEEEEEHH
T ss_pred CcHHHHHHHHHHc---CCcEEEEEecCCEEEEEEEHH
Confidence 4555666655554 34455555 489999998753
No 240
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=25.55 E-value=1.9e+02 Score=18.54 Aligned_cols=37 Identities=11% Similarity=-0.030 Sum_probs=27.6
Q ss_pred ChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHH
Q 030910 98 GVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRV 135 (169)
Q Consensus 98 G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~ 135 (169)
|.|+..+...+..++... |.+-+.+.+++.......+
T Consensus 9 G~GKTt~a~~la~~la~~-g~~VlliD~D~~~~~~~~~ 45 (195)
T PF01656_consen 9 GVGKTTIAANLAQALARK-GKKVLLIDLDPQAPNLSIL 45 (195)
T ss_dssp TSSHHHHHHHHHHHHHHT-TS-EEEEEESTTSHHHHHH
T ss_pred CccHHHHHHHHHhccccc-cccccccccCcccccHHHH
Confidence 888888888777777777 8898999998877554433
No 241
>PRK06724 hypothetical protein; Provisional
Probab=25.20 E-value=1.3e+02 Score=18.16 Aligned_cols=27 Identities=19% Similarity=0.127 Sum_probs=20.5
Q ss_pred CceeEEEEeeccCHHHHHHHHH----cCCeEE
Q 030910 117 YLDRIEGLVFSENKASQRVMEK----AGFIRE 144 (169)
Q Consensus 117 ~~~~v~~~~~~~N~~a~~~y~~----~Gf~~~ 144 (169)
++..|.+.|..- .+|.+||++ +||+..
T Consensus 7 ~i~Hv~l~V~Dl-e~s~~FY~~vlg~lg~~~~ 37 (128)
T PRK06724 7 GIHHIEFWVANL-EESISFYDMLFSIIGWRKL 37 (128)
T ss_pred ccCEEEEEeCCH-HHHHHHHHHHHhhCCcEEe
Confidence 677888877543 588899998 688864
No 242
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=25.14 E-value=81 Score=18.35 Aligned_cols=18 Identities=11% Similarity=0.025 Sum_probs=14.0
Q ss_pred CHHHHHHHHH-cCCeEEeE
Q 030910 129 NKASQRVMEK-AGFIREGL 146 (169)
Q Consensus 129 N~~a~~~y~~-~Gf~~~~~ 146 (169)
=.+|++||++ +||+....
T Consensus 10 l~~s~~FY~~~lG~~~~~~ 28 (125)
T cd08357 10 LEAARAFYGDVLGCKEGRS 28 (125)
T ss_pred HHHHHHHHHHhcCCEEeec
Confidence 3588999985 89988654
No 243
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=24.86 E-value=1.5e+02 Score=17.71 Aligned_cols=26 Identities=12% Similarity=-0.031 Sum_probs=18.3
Q ss_pred EEeeccCHHHHHHHHH-cCCeEEeEEe
Q 030910 123 GLVFSENKASQRVMEK-AGFIREGLLR 148 (169)
Q Consensus 123 ~~~~~~N~~a~~~y~~-~Gf~~~~~~~ 148 (169)
+.+..+-..|++||++ +|++.....+
T Consensus 5 L~~~~~~~eAi~FY~~~fg~~~~~~~~ 31 (128)
T cd06588 5 LWFNGNAEEALEFYQSVFGGEITSLTR 31 (128)
T ss_pred EeeCCCHHHHHHHHHHHhCCEeEEEEE
Confidence 4444455688999974 8998877654
No 244
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=24.09 E-value=2.1e+02 Score=18.53 Aligned_cols=47 Identities=11% Similarity=0.187 Sum_probs=26.1
Q ss_pred CCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeEEe
Q 030910 91 SAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGLLR 148 (169)
Q Consensus 91 ~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~~~ 148 (169)
.+++|--|+|.+++ +.+ |++++.+ ..+|+....-.+.+|-+.++..+
T Consensus 122 ~~d~R~ygigaqIL--------~dL-GV~~~rL--Ltnnp~k~~~L~g~gleV~~~vp 168 (169)
T PF00925_consen 122 PEDLRDYGIGAQIL--------RDL-GVKKMRL--LTNNPRKYVALEGFGLEVVERVP 168 (169)
T ss_dssp -S----THHHHHHH--------HHT-T--SEEE--E-S-HHHHHHHHHTT--EEEEE-
T ss_pred ccccccHHHHHHHH--------HHc-CCCEEEE--CCCChhHHHHHhcCCCEEEEEec
Confidence 46777778887743 345 8888874 45578888889999998887754
No 245
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional
Probab=23.65 E-value=99 Score=21.53 Aligned_cols=34 Identities=21% Similarity=0.068 Sum_probs=28.2
Q ss_pred CCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeec
Q 030910 92 AKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFS 127 (169)
Q Consensus 92 ~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~ 127 (169)
+...|.--|...+..++.++ .+. |++.|++.+..
T Consensus 35 ~~~~GH~~G~~~l~~iv~~c-~~~-gI~~vTvYaFS 68 (243)
T PRK14829 35 KRTEGHKAGEPVLFDVVAGA-IEA-GVPYLSLYTFS 68 (243)
T ss_pred ChhHHHHHHHHHHHHHHHHH-HHc-CCCEEEEeeec
Confidence 45567778999999999999 555 99999999883
No 246
>PF00376 MerR: MerR family regulatory protein; InterPro: IPR000551 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these is the MerR subfamily. MerR, which is found in many bacterial species mediates the mercuric-dependent induction of the mercury resistance operon. In the absence of mercury merR represses transcription by binding tightly, as a dimer, to the 'mer' operator region; when mercury is present the dimeric complex binds a single ion and becomes a potent transcriptional activator, while remaining bound to the mer site. Members of the family include the mercuric resistance operon regulatory protein merR; Bacillus subtilis bltR and bmrR; Bacillus glnR; Streptomyces coelicolor hspR; Bradyrhizobium japonicum nolA; Escherichia coli superoxide response regulator soxR; and Streptomyces lividans transcriptional activator tipA [, , , , , ]. Other members include hypothetical proteins from E. coli, B. subtilis and Haemophilus influenzae. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3HH0_A 2DG6_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q07_A 1Q06_A 1Q05_B ....
Probab=23.53 E-value=87 Score=14.49 Aligned_cols=14 Identities=21% Similarity=0.451 Sum_probs=11.4
Q ss_pred HHHHHHHHHcCCeE
Q 030910 130 KASQRVMEKAGFIR 143 (169)
Q Consensus 130 ~~a~~~y~~~Gf~~ 143 (169)
...+++|++.|...
T Consensus 13 ~~tlR~ye~~Gll~ 26 (38)
T PF00376_consen 13 PRTLRYYEREGLLP 26 (38)
T ss_dssp HHHHHHHHHTTSS-
T ss_pred HHHHHHHHHCCCCC
Confidence 67899999999764
No 247
>COG3543 Uncharacterized conserved protein [Function unknown]
Probab=23.44 E-value=1.8e+02 Score=18.13 Aligned_cols=37 Identities=22% Similarity=0.041 Sum_probs=23.0
Q ss_pred CCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeecc
Q 030910 91 SAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSE 128 (169)
Q Consensus 91 ~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~ 128 (169)
-..|+|+|+....++-.-+.+.+-. .-..|.+...++
T Consensus 13 mq~y~GkGYS~~FveN~d~I~~rL~-~ge~i~lV~g~D 49 (135)
T COG3543 13 MQGYQGKGYSPAFVENYDAIAERLK-AGEDIKLVDGPD 49 (135)
T ss_pred eeecccccCCHHHHHHHHHHHHHhh-cCCCeEEEeccc
Confidence 4678999999988877666664332 333344443333
No 248
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=23.34 E-value=2.2e+02 Score=18.56 Aligned_cols=43 Identities=14% Similarity=0.074 Sum_probs=27.4
Q ss_pred ChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEe
Q 030910 98 GVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREG 145 (169)
Q Consensus 98 G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~ 145 (169)
|+|++-..+..+. ++. |++ |.....+. .++..-.+.-||+...
T Consensus 11 GyGsQG~a~AlNL--rDS-G~~-V~Vglr~~-s~s~~~A~~~Gf~v~~ 53 (165)
T PF07991_consen 11 GYGSQGHAHALNL--RDS-GVN-VIVGLREG-SASWEKAKADGFEVMS 53 (165)
T ss_dssp S-SHHHHHHHHHH--HHC-C-E-EEEEE-TT-CHHHHHHHHTT-ECCE
T ss_pred CCChHHHHHHHHH--HhC-CCC-EEEEecCC-CcCHHHHHHCCCeecc
Confidence 8888877777774 455 875 44434433 4689999999998754
No 249
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=23.32 E-value=1.9e+02 Score=19.59 Aligned_cols=34 Identities=21% Similarity=0.095 Sum_probs=26.6
Q ss_pred ChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHH
Q 030910 98 GVATEAVKIAVACAFKELKYLDRIEGLVFSENKAS 132 (169)
Q Consensus 98 G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a 132 (169)
|.|+..+..-+.+++.+. |.+-+.+..++.+..+
T Consensus 12 GvGKTt~a~nla~~la~~-g~~VlliD~D~q~~l~ 45 (246)
T TIGR03371 12 GVGKTTLTANLASALKLL-GEPVLAIDLDPQNLLR 45 (246)
T ss_pred CccHHHHHHHHHHHHHhC-CCcEEEEeCCCcchHH
Confidence 888888888777777777 8888888888876433
No 250
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=23.13 E-value=4e+02 Score=21.39 Aligned_cols=33 Identities=12% Similarity=0.107 Sum_probs=25.6
Q ss_pred HhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeEEe
Q 030910 113 KELKYLDRIEGLVFSENKASQRVMEKAGFIREGLLR 148 (169)
Q Consensus 113 ~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~~~ 148 (169)
+.+ |+++|.+-+ +|+.-+.-.+.+|.+++++.+
T Consensus 347 ~dL-GI~kIrLLT--NNP~Ki~~L~~~GIeVv~rvp 379 (555)
T PRK09319 347 NDL-GIKRLRLIT--NNPRKIAGLGGYGLEVVDRVP 379 (555)
T ss_pred HHc-CCCEEEECC--CCHHHHHHHHhCCCEEEEEec
Confidence 445 888887544 588888888999999988764
No 251
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=23.02 E-value=1.6e+02 Score=16.89 Aligned_cols=17 Identities=18% Similarity=0.016 Sum_probs=13.5
Q ss_pred CHHHHHHHH-HcCCeEEe
Q 030910 129 NKASQRVME-KAGFIREG 145 (169)
Q Consensus 129 N~~a~~~y~-~~Gf~~~~ 145 (169)
-..|+.||+ -+||+...
T Consensus 11 ~~~s~~Fy~~~lG~~~~~ 28 (122)
T cd08354 11 LEAAEAFYEDVLGLELML 28 (122)
T ss_pred HHHHHHHHHhccCCEEee
Confidence 358899997 58999875
No 252
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=23.02 E-value=1.2e+02 Score=21.06 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=28.9
Q ss_pred CCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeecc
Q 030910 92 AKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSE 128 (169)
Q Consensus 92 ~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~ 128 (169)
|...|.--|...+..+++++ .++ |++.|++.+...
T Consensus 24 ~~~~GH~~G~~~l~~i~~~~-~~l-gIk~lTvYaFS~ 58 (233)
T PRK14841 24 PRIKGHQRGAEVLHNTVKWS-LEL-GIKYLTAFSFST 58 (233)
T ss_pred chhhhHHHHHHHHHHHHHHH-HHc-CCCEEEEEeeeH
Confidence 55667778999999999999 555 999999988764
No 253
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=22.41 E-value=1.3e+02 Score=20.92 Aligned_cols=35 Identities=20% Similarity=0.183 Sum_probs=28.9
Q ss_pred CCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeecc
Q 030910 92 AKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSE 128 (169)
Q Consensus 92 ~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~ 128 (169)
|...|.--|..-+..++.+| .++ |++.|++.+...
T Consensus 29 ~~~~GH~~G~~~l~~i~~~c-~~l-gI~~vTvYaFS~ 63 (241)
T PRK14842 29 KRSEGHREGANAIDRLMDAS-LEY-GLKNISLYAFST 63 (241)
T ss_pred ChhHhHHHHHHHHHHHHHHH-HHc-CCCEEEEEEeeh
Confidence 55667778999999999999 555 999999888764
No 254
>PF00633 HHH: Helix-hairpin-helix motif; InterPro: IPR000445 The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins [, , ]. The HhH motif is similar to, but distinct from, the HtH motif. Both of these motifs have two helices connected by a short turn. In the HtH motif the second helix binds to DNA with the helix in the major groove. This allows the contact between specific base and residues throughout the protein. In the HhH motif the second helix does not protrude from the surface of the protein and therefore cannot lie in the major groove of the DNA. Crystallographic studies suggest that the interaction of the HhH domain with DNA is mediated by amino acids located in the strongly conserved loop (L-P-G-V) and at the N-terminal end of the second helix []. This interaction could involve the formation of hydrogen bonds between protein backbone nitrogens and DNA phosphate groups []. The structural difference between the HtH and HhH domains is reflected at the functional level: whereas the HtH domain, found primarily in gene regulatory proteins, binds DNA in a sequence specific manner, the HhH domain is rather found in proteins involved in enzymatic activities and binds DNA with no sequence specificity []. The HhH domain of DisA, a bacterial checkpoint control protein, is a DNA-binding domain [].; GO: 0003677 DNA binding; PDB: 3C1Z_A 3C23_A 3C1Y_A 3C21_A 1Z00_A 2A1J_B 1KEA_A 1VRL_A 1RRQ_A 3G0Q_A ....
Probab=22.37 E-value=74 Score=13.90 Aligned_cols=13 Identities=8% Similarity=0.353 Sum_probs=7.3
Q ss_pred cChHHHHHHHHHH
Q 030910 97 KGVATEAVKIAVA 109 (169)
Q Consensus 97 ~G~g~~l~~~~~~ 109 (169)
.|+|....+.++.
T Consensus 17 pGIG~~tA~~I~~ 29 (30)
T PF00633_consen 17 PGIGPKTANAILS 29 (30)
T ss_dssp TT-SHHHHHHHHH
T ss_pred CCcCHHHHHHHHh
Confidence 3667666666554
No 255
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=22.04 E-value=1.9e+02 Score=17.88 Aligned_cols=29 Identities=10% Similarity=0.005 Sum_probs=19.2
Q ss_pred CceeEEEEeeccCHHHHHHHH-HcCCeEEeE
Q 030910 117 YLDRIEGLVFSENKASQRVME-KAGFIREGL 146 (169)
Q Consensus 117 ~~~~v~~~~~~~N~~a~~~y~-~~Gf~~~~~ 146 (169)
.+..+.+.|. +-.+|.+||+ -+||+....
T Consensus 4 ~l~Hv~i~V~-Dle~s~~FY~~~LG~~~~~~ 33 (144)
T cd07239 4 KISHVVLNSP-DVDKTVAFYEDVLGFRVSDW 33 (144)
T ss_pred eeeEEEEECC-CHHHHHHHHHhcCCCEEEEe
Confidence 3455665553 3458899995 599987544
No 256
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=21.97 E-value=3e+02 Score=19.58 Aligned_cols=44 Identities=11% Similarity=0.114 Sum_probs=27.9
Q ss_pred ceeEEEEeeccCHHHHHHHHH-cCCeEEeEEeeeee-cCCEEeEeEE
Q 030910 118 LDRIEGLVFSENKASQRVMEK-AGFIREGLLRKYFF-VKGKSVDIVV 162 (169)
Q Consensus 118 ~~~v~~~~~~~N~~a~~~y~~-~Gf~~~~~~~~~~~-~~g~~~d~~~ 162 (169)
+..|.+.|..- ..|.+||++ +||..+...+...+ .-|.+-..+.
T Consensus 169 IGHvHL~v~~l-~eA~~fY~~~LG~~~~~~~~~A~F~a~G~YHHHia 214 (265)
T COG2514 169 IGHVHLKVADL-EEAEQFYEDVLGLEVTARGPSALFLASGDYHHHLA 214 (265)
T ss_pred EeEEEEEeCCH-HHHHHHHHHhcCCeeeecCCcceEEecCCcceeEE
Confidence 44566655433 478899998 99999988553433 3455444433
No 257
>PF06399 GFRP: GTP cyclohydrolase I feedback regulatory protein (GFRP); InterPro: IPR009112 GTP cyclohydrolase I feedback regulatory protein (GFRP) in mammals helps regulate the biosynthesis of tetrahydrobiopterin through the feedback inhibition of the rate-limiting enzyme GTP cyclohydrolase I (GTPCHI). Tetrahydrobiopterin is the cofactor required for the hydroxylation of aromatic amino acids. The crystal structure of GFRP reveals that the protein forms a homopentamer []. In the presence of phenylalanine, the stimulatory complex consists of a GTPCHI decamer sandwiched by two GFRP pentamers, which is thought to enhance GTPCHI activity by locking the enzyme in the active state []. The structure of GFRP consists of two alpha/beta layers arranged beta(2)-alpha-beta(2)-alpha-beta(2), with antiparallel beta-sheets in the order 342165.; GO: 0009890 negative regulation of biosynthetic process; PDB: 1IS7_N 1IS8_Q 1WPL_T 1JG5_C.
Probab=21.88 E-value=73 Score=17.89 Aligned_cols=45 Identities=18% Similarity=-0.006 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeEE
Q 030910 102 EAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGLL 147 (169)
Q Consensus 102 ~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~~ 147 (169)
++|+.+-......+ |-+.-...+...=..-..-.|+.||+.++..
T Consensus 26 ~LM~~LgA~~~~~l-gn~f~ey~~~~~Pr~VLnKLE~~G~kVvsmt 70 (83)
T PF06399_consen 26 ELMAYLGAKKRTPL-GNNFKEYHVDDPPRVVLNKLEKMGYKVVSMT 70 (83)
T ss_dssp HHHHHHT-EEE--T-T-SS-EEEESS-HHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHhcCceeccc-cCcceEEEcCCChHHHHHHHHhcCeEEEEEe
Confidence 45555544322334 4444555555554455678899999998763
No 258
>PF13530 SCP2_2: Sterol carrier protein domain; PDB: 3SXN_C 3N7Z_A 3RYO_B 3R1K_A 3UY5_A 2HV2_F 2I00_D 2OZG_A.
Probab=21.76 E-value=2.6e+02 Score=18.80 Aligned_cols=62 Identities=15% Similarity=0.001 Sum_probs=34.5
Q ss_pred CeEEEEEE-CCeEEEEEEEEeCCCC-CCcEEEEE--EEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEee
Q 030910 56 PWYRAICV-KDRPIGSIYVMPGIGK-DERRGEIG--YAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVF 126 (169)
Q Consensus 56 ~~~~~~~~-~~~~vG~~~~~~~~~~-~~~~~~i~--~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~ 126 (169)
....++.. +|++.||+.+...... ......+. ++.+++ +.+.+++++......+..+.+...
T Consensus 24 ~~~~~~~~~~g~~~GY~~y~~~~~~~~~~~l~V~El~~~~~~---------A~~aLl~fl~~h~~~~~~v~~~~p 89 (218)
T PF13530_consen 24 RGYAVYYDEDGEPDGYVIYRFKDDWEPGGTLEVRELVALDPE---------AYRALLAFLASHRDQVDEVEWNRP 89 (218)
T ss_dssp SEEEEEEECTSEEEEEEEEEEET-SSSTTEEEEEEEEESSHH---------HHHHHHHHHHTCCTTESEEEEEES
T ss_pred ceEEEEECCCCCeeEEEEEEEcccCCCCceEEEEEEEeCCHH---------HHHHHHHHHHhhhCcceEEEEEcC
Confidence 33444444 8999999999987721 11225554 223443 344555555454216777777543
No 259
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=21.53 E-value=1.8e+02 Score=16.81 Aligned_cols=23 Identities=17% Similarity=0.124 Sum_probs=15.1
Q ss_pred eeccC-HHHHHHHHH-cCCeEEeEE
Q 030910 125 VFSEN-KASQRVMEK-AGFIREGLL 147 (169)
Q Consensus 125 ~~~~N-~~a~~~y~~-~Gf~~~~~~ 147 (169)
....| .+|.+||.+ +||+.....
T Consensus 7 l~v~d~~~a~~FY~~~lG~~~~~~~ 31 (120)
T cd07254 7 LNVDDLEASIAFYSKLFGVEPTKVR 31 (120)
T ss_pred EEeCCHHHHHHHHHHHhCCeEeccc
Confidence 33344 588999975 499876553
No 260
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=21.52 E-value=3.2e+02 Score=21.06 Aligned_cols=52 Identities=10% Similarity=0.057 Sum_probs=36.3
Q ss_pred EEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCH-HHHHHHHHcCCeEEeE
Q 030910 88 YAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENK-ASQRVMEKAGFIREGL 146 (169)
Q Consensus 88 ~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~-~a~~~y~~~Gf~~~~~ 146 (169)
+.|||. ++|.+..+++.+.++. ...-|+++|++.-. +=.+.+.+.||+....
T Consensus 366 VvvDPP--R~G~~~~~lk~l~~~~-----p~~IvYVSCNP~TlaRDl~~L~~~gy~i~~v 418 (432)
T COG2265 366 VVVDPP--RAGADREVLKQLAKLK-----PKRIVYVSCNPATLARDLAILASTGYEIERV 418 (432)
T ss_pred EEECCC--CCCCCHHHHHHHHhcC-----CCcEEEEeCCHHHHHHHHHHHHhCCeEEEEE
Confidence 457887 5588888888887654 44567888876543 2367888999975544
No 261
>PF04555 XhoI: Restriction endonuclease XhoI; InterPro: IPR007636 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents type II restriction enzymes such as XhoI (3.1.21.4 from EC), which recognises the double-stranded sequence CTCGAG and cleave after C-1 [].; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=21.47 E-value=2.6e+02 Score=18.72 Aligned_cols=34 Identities=3% Similarity=0.005 Sum_probs=24.8
Q ss_pred EEeCCCccCcChHHHHHHHHHHHHHHhcCCceeEEE
Q 030910 88 YAISAKYWGKGVATEAVKIAVACAFKELKYLDRIEG 123 (169)
Q Consensus 88 ~~v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~ 123 (169)
+-|+|+|+|..+.++.--.+.+...+. -.....+
T Consensus 145 Fpv~p~F~g~SY~~Ry~ilc~rLv~e~--lY~aa~l 178 (196)
T PF04555_consen 145 FPVDPEFKGASYLKRYEILCERLVQER--LYTAACL 178 (196)
T ss_pred CCccHHhcCCcHHHHHHHHHHHHHHhc--ccceeEE
Confidence 669999999999998777777666444 4454444
No 262
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=21.46 E-value=1.8e+02 Score=16.75 Aligned_cols=23 Identities=17% Similarity=0.104 Sum_probs=16.7
Q ss_pred eccCHHHHHHHHH-cCCeEEeEEe
Q 030910 126 FSENKASQRVMEK-AGFIREGLLR 148 (169)
Q Consensus 126 ~~~N~~a~~~y~~-~Gf~~~~~~~ 148 (169)
.++-.+|.++|.+ +|+......+
T Consensus 7 V~Dl~~a~~~~~~~lG~~~~~~~~ 30 (109)
T PF13669_consen 7 VPDLDAAAAFYCDVLGFEPWERYR 30 (109)
T ss_dssp ES-HHHHHHHHHHCTTHEEEEEEE
T ss_pred cCCHHHHHHHHHHhhCCcEEEEEe
Confidence 3455688999998 9998776544
No 263
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=21.46 E-value=1.8e+02 Score=17.48 Aligned_cols=27 Identities=11% Similarity=-0.217 Sum_probs=18.2
Q ss_pred eeEEEEeeccCHHHHHHHHH-cCCeEEeE
Q 030910 119 DRIEGLVFSENKASQRVMEK-AGFIREGL 146 (169)
Q Consensus 119 ~~v~~~~~~~N~~a~~~y~~-~Gf~~~~~ 146 (169)
..|.+.|. +=.+++.||++ +||+....
T Consensus 2 ~HV~l~V~-Dl~~a~~FY~~~LG~~~~~~ 29 (131)
T cd08363 2 NHMTFSVS-NLDKSISFYKHVFMEKLLVL 29 (131)
T ss_pred ceEEEEEC-CHHHHHHHHHHhhCCEEecc
Confidence 34555553 44588899996 79987543
No 264
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=21.37 E-value=1.6e+02 Score=20.71 Aligned_cols=35 Identities=26% Similarity=0.300 Sum_probs=27.9
Q ss_pred CCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeecc
Q 030910 92 AKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSE 128 (169)
Q Consensus 92 ~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~ 128 (169)
+...|.--|..-+..++.++ .++ |++.|++.+...
T Consensus 35 ~~~~GH~~G~~~l~~i~~~c-~~l-gI~~lTvYaFS~ 69 (249)
T PRK14834 35 PRAAGHRAGVEALRRVVRAA-GEL-GIGYLTLFAFSS 69 (249)
T ss_pred chhhhHHHHHHHHHHHHHHH-HHc-CCCEEEEEEEec
Confidence 44456677899999999999 555 999999988664
No 265
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=21.36 E-value=1.7e+02 Score=21.72 Aligned_cols=44 Identities=14% Similarity=0.061 Sum_probs=27.8
Q ss_pred cCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCC
Q 030910 95 WGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGF 141 (169)
Q Consensus 95 rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf 141 (169)
-|-|||.+++...++.+.... . ..+.+...... ..-..|++.|=
T Consensus 10 pGDGIGpEv~~~a~kVl~a~~-~-~~~~~e~~~~~-~G~~~~~~~G~ 53 (348)
T COG0473 10 PGDGIGPEVMAAALKVLEAAA-E-FGLDFEFEEAE-VGGEAYDKHGE 53 (348)
T ss_pred CCCCCCHHHHHHHHHHHHHhh-h-cCCceEEEEeh-hhHHHHHHcCC
Confidence 378999999999998874332 2 22334333333 33667788773
No 266
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=21.36 E-value=1.3e+02 Score=20.55 Aligned_cols=35 Identities=17% Similarity=0.236 Sum_probs=28.4
Q ss_pred CCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeecc
Q 030910 92 AKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSE 128 (169)
Q Consensus 92 ~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~ 128 (169)
|...|.--|...+..++.+|. +. |++.+++.+...
T Consensus 21 ~~~~GH~~G~~~~~~i~~~~~-~~-gI~~lTvyaFS~ 55 (221)
T cd00475 21 DRIEGHKAGAEKLRDILRWCL-EL-GVKEVTLYAFST 55 (221)
T ss_pred ChhHhHHHHHHHHHHHHHHHH-Hc-CCCEEEEEeech
Confidence 555677789999999999994 45 999999888664
No 267
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=21.19 E-value=1.8e+02 Score=16.68 Aligned_cols=27 Identities=11% Similarity=-0.155 Sum_probs=17.8
Q ss_pred eEEEEeeccCHHHHHHHHH-cCCeEEeEE
Q 030910 120 RIEGLVFSENKASQRVMEK-AGFIREGLL 147 (169)
Q Consensus 120 ~v~~~~~~~N~~a~~~y~~-~Gf~~~~~~ 147 (169)
.+.+.|. +=.+|.+||++ +||+.....
T Consensus 3 hv~i~v~-d~~~a~~fY~~~lG~~~~~~~ 30 (121)
T cd07233 3 HTMLRVK-DLEKSLDFYTDVLGMKLLRRK 30 (121)
T ss_pred eEEEEec-CcHHHHHHHHhccCCeEEEEE
Confidence 3444443 33578999986 599987653
No 268
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=21.01 E-value=3.2e+02 Score=19.42 Aligned_cols=53 Identities=13% Similarity=0.184 Sum_probs=35.1
Q ss_pred cCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeEEee
Q 030910 95 WGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGLLRK 149 (169)
Q Consensus 95 rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~~~~ 149 (169)
.|..+-.+.+..=+..+ ++. |++.|.+...+..+.-..+..++|+-+....+.
T Consensus 29 ~g~a~~~~~~~~d~~l~-k~~-G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~~ 81 (298)
T PF02836_consen 29 LGRAMPDEAMERDLELM-KEM-GFNAIRTHHYPPSPRFYDLCDELGILVWQEIPL 81 (298)
T ss_dssp TBT---HHHHHHHHHHH-HHT-T-SEEEETTS--SHHHHHHHHHHT-EEEEE-S-
T ss_pred ccccCCHHHHHHHHHHH-Hhc-CcceEEcccccCcHHHHHHHhhcCCEEEEeccc
Confidence 45556677777777777 566 999999988888888888899999998876543
No 269
>PRK14832 undecaprenyl pyrophosphate synthase; Provisional
Probab=20.99 E-value=1.1e+02 Score=21.45 Aligned_cols=35 Identities=14% Similarity=0.283 Sum_probs=28.6
Q ss_pred CCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeecc
Q 030910 92 AKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSE 128 (169)
Q Consensus 92 ~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~ 128 (169)
|...|.--|...+..+++++. +. |++.+++.+...
T Consensus 39 ~~~~GH~~G~~~l~~i~~~c~-~~-gI~~lTvyaFS~ 73 (253)
T PRK14832 39 PRIAGHRQGARTLKELLRCCK-DW-GIKALTAYAFST 73 (253)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-Hc-CCCEEEEEEeeh
Confidence 556677788999999999995 55 999999888764
No 270
>PHA01365 hypothetical protein
Probab=20.83 E-value=1.7e+02 Score=16.34 Aligned_cols=29 Identities=17% Similarity=0.032 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHhcCCceeEEEEeecc
Q 030910 99 VATEAVKIAVACAFKELKYLDRIEGLVFSE 128 (169)
Q Consensus 99 ~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~ 128 (169)
.|++.++.+++.+|+.. .+..+...+...
T Consensus 3 ~~~e~ikrilqK~fkds-kieki~~lps~~ 31 (91)
T PHA01365 3 DYKNGIKKLLQKCFKDS-SIDVIFMSCNNL 31 (91)
T ss_pred chHHHHHHHHHHHhCCC-ceEEEEEecCCC
Confidence 46788888898888888 888888666543
No 271
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=20.78 E-value=1e+02 Score=23.99 Aligned_cols=28 Identities=25% Similarity=0.258 Sum_probs=25.7
Q ss_pred CceeEEEEeeccCHHHHHHHHHcCCeEE
Q 030910 117 YLDRIEGLVFSENKASQRVMEKAGFIRE 144 (169)
Q Consensus 117 ~~~~v~~~~~~~N~~a~~~y~~~Gf~~~ 144 (169)
|-++|.+.|.++|+.-+.|.++-||-..
T Consensus 333 GGDEV~~~CW~s~~~Iq~fM~~kGfg~~ 360 (542)
T KOG2499|consen 333 GGDEVSTPCWKSNPEIQDFMRKKGFGLD 360 (542)
T ss_pred CCceeecccccCChHHHHHHHhCCCCch
Confidence 7789999999999999999999999654
No 272
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional
Probab=20.75 E-value=1.1e+02 Score=21.06 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=27.7
Q ss_pred CCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeecc
Q 030910 92 AKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSE 128 (169)
Q Consensus 92 ~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~ 128 (169)
+...|.--|...+..+++++ .+. |++.|++.+...
T Consensus 14 ~~~~GH~~G~~~l~~i~~~c-~~~-GI~~lT~yaFS~ 48 (229)
T PRK10240 14 IRAFGHKAGAKSVRRAVSFA-ANN-GIEALTLYAFSS 48 (229)
T ss_pred CHHHHHHHHHHHHHHHHHHH-HHc-CCCEEEEEeeeh
Confidence 34456667889999999999 555 999999888764
No 273
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=20.65 E-value=1.9e+02 Score=16.77 Aligned_cols=26 Identities=19% Similarity=0.061 Sum_probs=17.4
Q ss_pred eeEEEEeeccCHHHHHHHHH-cCCeEEe
Q 030910 119 DRIEGLVFSENKASQRVMEK-AGFIREG 145 (169)
Q Consensus 119 ~~v~~~~~~~N~~a~~~y~~-~Gf~~~~ 145 (169)
..+.+.|. +=.+|.+||+. +||+...
T Consensus 4 ~~~~l~v~-D~~~a~~FY~~~lG~~~~~ 30 (120)
T cd09011 4 KNPLLVVK-DIEKSKKFYEKVLGLKVVM 30 (120)
T ss_pred EEEEEEEC-CHHHHHHHHHHhcCCEEee
Confidence 34444443 34588999985 9998753
No 274
>COG5270 PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis]
Probab=20.57 E-value=2.1e+02 Score=19.14 Aligned_cols=13 Identities=15% Similarity=0.151 Sum_probs=7.3
Q ss_pred CCeEEEEEEEEeC
Q 030910 64 KDRPIGSIYVMPG 76 (169)
Q Consensus 64 ~~~~vG~~~~~~~ 76 (169)
+|.++|+..+...
T Consensus 171 ng~~vGVg~a~~~ 183 (202)
T COG5270 171 NGRVVGVGIAKKS 183 (202)
T ss_pred CCEEEEEEEEecC
Confidence 6666666555443
No 275
>COG4904 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.43 E-value=80 Score=20.09 Aligned_cols=14 Identities=21% Similarity=0.316 Sum_probs=11.7
Q ss_pred HHHHHHHHcCCeEE
Q 030910 131 ASQRVMEKAGFIRE 144 (169)
Q Consensus 131 ~a~~~y~~~Gf~~~ 144 (169)
..-.||++.||+-.
T Consensus 71 ~~~~FYEnyGf~A~ 84 (174)
T COG4904 71 TVEAFYENYGFSAG 84 (174)
T ss_pred HHHHHHHHcCCCcC
Confidence 45689999999876
No 276
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=20.37 E-value=2.7e+02 Score=18.39 Aligned_cols=29 Identities=17% Similarity=0.025 Sum_probs=19.5
Q ss_pred ceeEEEEeeccCHHHHHHHH-HcCCeEEeEE
Q 030910 118 LDRIEGLVFSENKASQRVME-KAGFIREGLL 147 (169)
Q Consensus 118 ~~~v~~~~~~~N~~a~~~y~-~~Gf~~~~~~ 147 (169)
+..+.+.|. +=..|++||+ .+||+...+.
T Consensus 28 ~~Ht~i~V~-Dle~Si~FY~~vLG~~~~~r~ 57 (185)
T PLN03042 28 MQQTMFRIK-DPKASLDFYSRVLGMSLLKRL 57 (185)
T ss_pred EEEEEEeeC-CHHHHHHHHHhhcCCEEEEEE
Confidence 444555444 2358999997 5899987664
No 277
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=20.28 E-value=2.3e+02 Score=17.64 Aligned_cols=27 Identities=15% Similarity=-0.024 Sum_probs=17.6
Q ss_pred eeEEEEeeccCHHHHHHHH-HcCCeEEeE
Q 030910 119 DRIEGLVFSENKASQRVME-KAGFIREGL 146 (169)
Q Consensus 119 ~~v~~~~~~~N~~a~~~y~-~~Gf~~~~~ 146 (169)
..|.+.|. +=.+|++||+ .+||+....
T Consensus 3 ~Hv~l~V~-Dle~a~~FY~~~LG~~~~~~ 30 (153)
T cd07257 3 GHVVLEVP-DFAASFDWYTETFGLKPSDV 30 (153)
T ss_pred cEEEEecC-CHHHHHHHHHHhcCCeEEee
Confidence 44555553 2347889995 699987644
No 278
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=20.20 E-value=3.5e+02 Score=20.52 Aligned_cols=48 Identities=17% Similarity=0.199 Sum_probs=34.0
Q ss_pred eCCCccCcChHHHHHHHHHHHHHHhcCCceeEEEEeeccCHHHHHHHHHcCCeEEeEEe
Q 030910 90 ISAKYWGKGVATEAVKIAVACAFKELKYLDRIEGLVFSENKASQRVMEKAGFIREGLLR 148 (169)
Q Consensus 90 v~~~~rg~G~g~~l~~~~~~~~~~~~~~~~~v~~~~~~~N~~a~~~y~~~Gf~~~~~~~ 148 (169)
..++.|.-|+|.+++ +.+ |+++|.+- .+|+.-+.-.+.+|.+++++.+
T Consensus 309 ~~~D~RdygigAqIL--------~dL-GV~~irLL--TNnp~K~~~L~~~GieV~~~vp 356 (387)
T PRK09318 309 FKEDERDYAAAFQIL--------KAL-GIEKVRLL--TNNPRKTKALEKYGIEVVETVP 356 (387)
T ss_pred CCccceeeeHHHHHH--------HHc-CCCEEEEC--CCCHHHHHHHHhCCCEEEEEec
Confidence 345677777777643 345 88888754 4577778888899999987754
Done!