Query 030911
Match_columns 169
No_of_seqs 118 out of 321
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 09:55:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030911.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030911hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qht_C Monobody YSMB-1; fibron 37.8 32 0.0011 22.1 3.4 30 68-98 64-94 (97)
2 2dle_A Receptor-type tyrosine- 37.2 67 0.0023 21.5 5.1 30 68-101 65-94 (104)
3 2zez_A Family 16 CBM-2, S-laye 32.6 38 0.0013 24.7 3.4 23 63-85 48-70 (144)
4 3k2m_C Monobody HA4; engineere 30.3 67 0.0023 20.7 4.1 31 68-99 66-98 (101)
5 2h41_A Fibronectin; beta sandw 28.4 32 0.0011 23.1 2.1 27 68-98 65-91 (95)
6 3tes_A Tencon; fibronectin typ 25.5 95 0.0032 19.9 4.2 31 68-102 61-91 (98)
7 1j8k_A Fibronectin; EDA, TYPEI 24.7 43 0.0015 21.1 2.2 29 68-100 61-89 (94)
8 2lde_A Sarafotoxin-I3; endothe 24.1 13 0.00046 19.6 -0.3 11 30-40 16-26 (26)
9 2qbw_A PDZ-fibronectin fusion 23.6 1.2E+02 0.004 22.1 4.8 30 68-98 163-192 (195)
10 1dyo_A Endo-1,4-beta-xylanase 23.4 2.1E+02 0.0071 20.5 10.8 88 68-168 64-156 (160)
11 4a94_C Carboxypeptidase inhibi 23.3 33 0.0011 20.5 1.3 29 65-95 13-41 (53)
12 2cui_A Tenascin-X; fibronectin 23.2 44 0.0015 22.8 2.1 29 68-100 76-104 (112)
13 1x5a_A Ephrin type-A receptor 23.2 1.2E+02 0.0042 19.6 4.5 29 68-97 68-96 (107)
14 2rb8_A Tenascin; beta sheet,lo 23.1 45 0.0015 21.8 2.1 30 68-101 62-91 (104)
15 2ocf_D Fibronectin; estrogen r 22.1 40 0.0014 23.0 1.8 16 68-83 88-103 (121)
16 2edd_A Netrin receptor DCC; tu 22.1 1E+02 0.0035 20.8 4.0 16 22-37 26-41 (123)
17 3hwj_A E3 ubiquitin-protein li 21.3 59 0.002 24.7 2.7 27 68-94 100-126 (172)
18 3b83_A Ten-D3; beta sheet, com 20.1 1.3E+02 0.0044 19.2 4.0 30 68-101 61-90 (100)
No 1
>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like modifier, S NOVO protein; 2.40A {Artificial gene}
Probab=37.77 E-value=32 Score=22.12 Aligned_cols=30 Identities=17% Similarity=0.050 Sum_probs=17.6
Q ss_pred EccCCCeEEEEEEEEeccCcCC-CcccCeEEE
Q 030911 68 EVKRGKKYQIGFKISLKADAFG-WSGCPVFMM 98 (169)
Q Consensus 68 ~LSp~t~Y~ay~v~kl~~~a~G-w~~~pv~~~ 98 (169)
.|.|+|.|.+.+.-.-... .| ....|+.+.
T Consensus 64 ~L~p~t~Y~v~V~A~~~~G-~gp~ss~p~~~~ 94 (97)
T 3qht_C 64 GLSPGVDYTITVYAYYSYY-DLYYSYSPSSIN 94 (97)
T ss_dssp SCCTTCEEEEEEEEEEEET-TEEEECSCEEEE
T ss_pred CCCCCCEEEEEEEEEeCCc-cCCCCCCCEEEe
Confidence 4889999987666544332 22 223466553
No 2
>2dle_A Receptor-type tyrosine-protein phosphatase ETA; protein-tyrosine phosphatase ETA, R-PTP-ETA, HPTP ETA, protein-tyrosine phosphatase receptor type J; NMR {Homo sapiens}
Probab=37.16 E-value=67 Score=21.46 Aligned_cols=30 Identities=17% Similarity=0.175 Sum_probs=19.8
Q ss_pred EccCCCeEEEEEEEEeccCcCCCcccCeEEEEEe
Q 030911 68 EVKRGKKYQIGFKISLKADAFGWSGCPVFMMAKL 101 (169)
Q Consensus 68 ~LSp~t~Y~ay~v~kl~~~a~Gw~~~pv~~~~~~ 101 (169)
.|.|||.|.+.+.-. . .+-+..|..+.+..
T Consensus 65 gL~PgT~Y~~~V~A~-~---~~~~~~p~~~~~~T 94 (104)
T 2dle_A 65 GLRSSTFYNITVCPV-L---GDIEGTPGFLQVHT 94 (104)
T ss_dssp SCCSSCEEEEEEEEE-S---SSCCCBCEEEEEEC
T ss_pred CCCCCCEEEEEEEEE-E---CCcccCCeeEEEEc
Confidence 388999999766554 2 34455676666544
No 3
>2zez_A Family 16 CBM-2, S-layer associated multidomain endoglucanase; family 16 carbohydrate binding module-2; 1.90A {Thermoanaerobacterium polysaccharolytiorganism_taxid}
Probab=32.61 E-value=38 Score=24.70 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=18.3
Q ss_pred EEEEEEccCCCeEEEEEEEEecc
Q 030911 63 ATGSVEVKRGKKYQIGFKISLKA 85 (169)
Q Consensus 63 I~G~i~LSp~t~Y~ay~v~kl~~ 85 (169)
+.+.+.|.|||+|....-+|...
T Consensus 48 ~~Q~V~l~PnttYtLSa~vk~~~ 70 (144)
T 2zez_A 48 MGQKVALKPNTTYILGAWGKFTA 70 (144)
T ss_dssp EEEECCCCTTCEEEEEEEEEESS
T ss_pred EEEEEEECCCCEEEEEEEEEEcc
Confidence 34566799999999998888753
No 4
>3k2m_C Monobody HA4; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A 1fna_A
Probab=30.31 E-value=67 Score=20.74 Aligned_cols=31 Identities=16% Similarity=0.184 Sum_probs=18.6
Q ss_pred EccCCCeEEEEEEEEeccCcCCC--cccCeEEEE
Q 030911 68 EVKRGKKYQIGFKISLKADAFGW--SGCPVFMMA 99 (169)
Q Consensus 68 ~LSp~t~Y~ay~v~kl~~~a~Gw--~~~pv~~~~ 99 (169)
.|.|+|.|.+.+.-.-.+ ..|+ ...|+.+++
T Consensus 66 ~L~p~t~Y~~~V~A~~~~-~~~~~~~s~p~~~~~ 98 (101)
T 3k2m_C 66 GLSPGVDYTITVYAWGED-SAGYMFMYSPISINY 98 (101)
T ss_dssp SCCTTCEEEEEEEEEEEC-TTSCEEECBCEEEEE
T ss_pred CCCCCCEEEEEEEEEeCC-ccceeecCCCEEEEe
Confidence 488999999766554433 2221 246776653
No 5
>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR {Homo sapiens} PDB: 2h45_A
Probab=28.35 E-value=32 Score=23.06 Aligned_cols=27 Identities=11% Similarity=0.231 Sum_probs=16.7
Q ss_pred EccCCCeEEEEEEEEeccCcCCCcccCeEEE
Q 030911 68 EVKRGKKYQIGFKISLKADAFGWSGCPVFMM 98 (169)
Q Consensus 68 ~LSp~t~Y~ay~v~kl~~~a~Gw~~~pv~~~ 98 (169)
.|.|+|.|.+.+.- +.+ |=+..|+...
T Consensus 65 ~L~PgT~Y~V~v~a-~~~---~~~S~p~s~~ 91 (95)
T 2h41_A 65 DLLPGRKYIVNVYQ-ISE---DGEQSLILST 91 (95)
T ss_dssp SCCTTCEEEEEEEE-EET---TSCEEEEEEE
T ss_pred CCCCCCEEEEEEEE-EcC---CCcccCEEEE
Confidence 48899999986543 322 3333566554
No 6
>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de novo; 2.50A {Synthetic}
Probab=25.54 E-value=95 Score=19.94 Aligned_cols=31 Identities=19% Similarity=0.130 Sum_probs=20.8
Q ss_pred EccCCCeEEEEEEEEeccCcCCCcccCeEEEEEec
Q 030911 68 EVKRGKKYQIGFKISLKADAFGWSGCPVFMMAKLG 102 (169)
Q Consensus 68 ~LSp~t~Y~ay~v~kl~~~a~Gw~~~pv~~~~~~g 102 (169)
.|.|+|.|.+.+.-.-. .|-. .|+...+..|
T Consensus 61 gL~P~t~Y~~~V~A~~~---~g~S-~p~~~~~~~~ 91 (98)
T 3tes_A 61 GLKPGTEYTVSIYGVKG---GHRS-NPLSAEFTTG 91 (98)
T ss_dssp SCCTTCEEEEEEEEEET---TEEB-CCEEEEEECS
T ss_pred CCCCCCEEEEEEEEEeC---Cccc-CCEEEEEEcC
Confidence 48899999976655433 2433 6888876664
No 7
>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=24.67 E-value=43 Score=21.12 Aligned_cols=29 Identities=14% Similarity=0.106 Sum_probs=17.6
Q ss_pred EccCCCeEEEEEEEEeccCcCCCcccCeEEEEE
Q 030911 68 EVKRGKKYQIGFKISLKADAFGWSGCPVFMMAK 100 (169)
Q Consensus 68 ~LSp~t~Y~ay~v~kl~~~a~Gw~~~pv~~~~~ 100 (169)
.|.|+|.|.+.+.-.- ..|-. .|+...+.
T Consensus 61 ~L~p~t~Y~~~V~A~~---~~g~s-~p~~~~~~ 89 (94)
T 1j8k_A 61 GLRPGSEYTVSVVALH---DDMES-QPLIGTQS 89 (94)
T ss_dssp SCCCCSEEEEEEEECS---SSCCC-CCEEEEEE
T ss_pred CCCCCCEEEEEEEEEc---CCCcC-CCEEeEEE
Confidence 4889999997555422 23433 56665543
No 8
>2lde_A Sarafotoxin-I3; endothelin-like peptide; NMR {Synthetic}
Probab=24.14 E-value=13 Score=19.64 Aligned_cols=11 Identities=18% Similarity=0.549 Sum_probs=7.9
Q ss_pred cceeEeCCCCC
Q 030911 30 GLNIVWGNDPR 40 (169)
Q Consensus 30 ~L~I~Wgd~~~ 40 (169)
.|.|+|.++|+
T Consensus 16 hlDiIWvntp~ 26 (26)
T 2lde_A 16 HKDVIWVNRNX 26 (26)
T ss_dssp STTCSTTTCC-
T ss_pred cccEEEecCCC
Confidence 37788988874
No 9
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A
Probab=23.61 E-value=1.2e+02 Score=22.06 Aligned_cols=30 Identities=17% Similarity=0.082 Sum_probs=18.2
Q ss_pred EccCCCeEEEEEEEEeccCcCCCcccCeEEE
Q 030911 68 EVKRGKKYQIGFKISLKADAFGWSGCPVFMM 98 (169)
Q Consensus 68 ~LSp~t~Y~ay~v~kl~~~a~Gw~~~pv~~~ 98 (169)
.|.|+|.|.+.+.-.-.. -+|=...|+.++
T Consensus 163 gL~p~t~Y~~~V~A~~~~-G~g~~S~~v~~~ 192 (195)
T 2qbw_A 163 GLKPGVDYTITVYAYSDY-YGSHHYSPISIN 192 (195)
T ss_dssp SCCTTCEEEEEEEEESST-TSSCBCCCEEEE
T ss_pred CCCCCCEEEEEEEEEeCC-ccCCCCCCEEEE
Confidence 488999999765544332 334334566654
No 10
>1dyo_A Endo-1,4-beta-xylanase Y; carbohydrate-binding module, xylan-binding; 2.1A {Clostridium thermocellum} SCOP: b.18.1.7 PDB: 1h6y_A 1h6x_A
Probab=23.45 E-value=2.1e+02 Score=20.53 Aligned_cols=88 Identities=15% Similarity=0.165 Sum_probs=48.2
Q ss_pred EccCCCeEEEEEEEEeccCcCCCcccCeEEEEEe-cCCCcEEEEEEeeCCCCCCcccccCCcEEEEEccC---C-CCcEE
Q 030911 68 EVKRGKKYQIGFKISLKADAFGWSGCPVFMMAKL-GKKGKYTWRKMKPLDHLGKEAAEIPDEKFEILVPE---Q-GENQL 142 (169)
Q Consensus 68 ~LSp~t~Y~ay~v~kl~~~a~Gw~~~pv~~~~~~-g~~g~~~~~~v~l~~~~~~~~~~~pdgW~Eie~Ge---~-~~~ev 142 (169)
.|.||++|.+..-+++.+.. ....+.+++.. ..+|......+.-. ...+++|-+++-+. . ....+
T Consensus 64 ~l~~g~~Y~~Sa~V~~~~g~---~~~~v~~~l~~~~~~g~~~y~~i~~~-------~~~~~~W~~L~G~~ft~~~~~~~~ 133 (160)
T 1dyo_A 64 TFVPGNTYCFSVVASFIEGA---SSTTFCMKLQYVDGSGTQRYDTIDMK-------TVGPNQWVHLYNPQYRIPSDATDM 133 (160)
T ss_dssp TSCTTCEEEEEEEEECCSSS---SCEEEEEEEEEECTTSCEEEEEEEEE-------EECSSCCEEEEEEEEECCTTCEEE
T ss_pred hccCCCEEEEEEEEEECCCC---CceeEEEEEEEEcCCCCEEEEEEeeE-------EEcCCccEEEECcEEEeCCCCCEE
Confidence 36799999999999987633 22234444443 34555333222110 11246798887543 1 22233
Q ss_pred EEEEEEEeCCeeeeeEEEEEEEEEEc
Q 030911 143 YFGLYEVWNGKWKGGLLIHHAFIREV 168 (169)
Q Consensus 143 ~fs~~e~~~~~wK~GLiv~GieIRP~ 168 (169)
.+- .|. ..-..-+.|+.+.|.|.
T Consensus 134 ~ly-ve~--~~~~~d~yiDdv~i~~~ 156 (160)
T 1dyo_A 134 YVY-VET--ADDTINFYIDEAIGAVA 156 (160)
T ss_dssp EEE-EEE--SSCCCCEEEEEEEEEET
T ss_pred EEE-EEC--CCCCccEEEEEEEEEeC
Confidence 322 232 23455588999888773
No 11
>4a94_C Carboxypeptidase inhibitor; hydrolase-hydrolase inhibitor complex, CPA4, NVCI, PCI, LCI; 1.70A {Nerita versicolor}
Probab=23.34 E-value=33 Score=20.48 Aligned_cols=29 Identities=17% Similarity=0.271 Sum_probs=21.0
Q ss_pred EEEEccCCCeEEEEEEEEeccCcCCCcccCe
Q 030911 65 GSVEVKRGKKYQIGFKISLKADAFGWSGCPV 95 (169)
Q Consensus 65 G~i~LSp~t~Y~ay~v~kl~~~a~Gw~~~pv 95 (169)
|+..|-|..+- .||.|-+|+.||++.+-|
T Consensus 13 grcplvpdatc--tfvckaadndfgyecqhv 41 (53)
T 4a94_C 13 GRCPLVPDATC--TFVCKAADNDFGYECQHV 41 (53)
T ss_dssp CCCTTSTTCEE--EEEEEECSSTTSEEEEEE
T ss_pred CcCccccCCeE--EEEEeeccCCCCceeeEE
Confidence 33456677654 489999999999996444
No 12
>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=23.24 E-value=44 Score=22.75 Aligned_cols=29 Identities=10% Similarity=0.096 Sum_probs=17.6
Q ss_pred EccCCCeEEEEEEEEeccCcCCCcccCeEEEEE
Q 030911 68 EVKRGKKYQIGFKISLKADAFGWSGCPVFMMAK 100 (169)
Q Consensus 68 ~LSp~t~Y~ay~v~kl~~~a~Gw~~~pv~~~~~ 100 (169)
.|.|+|.|.+++.-.-. +=...|+.....
T Consensus 76 gL~PgT~Y~~~V~A~~~----~~~s~p~~~~~~ 104 (112)
T 2cui_A 76 DLRSGTLYSLTLYGLRG----PHKADSIQGTAR 104 (112)
T ss_dssp SCCTTCEEEEEEEEECS----SSEEEEEEEEEE
T ss_pred CCCCCCEEEEEEEEEEC----CcccCCEEEEEE
Confidence 48899999987665432 223345555433
No 13
>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK, fibronectin type III (FN3) domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1
Probab=23.16 E-value=1.2e+02 Score=19.64 Aligned_cols=29 Identities=7% Similarity=-0.040 Sum_probs=17.1
Q ss_pred EccCCCeEEEEEEEEeccCcCCCcccCeEE
Q 030911 68 EVKRGKKYQIGFKISLKADAFGWSGCPVFM 97 (169)
Q Consensus 68 ~LSp~t~Y~ay~v~kl~~~a~Gw~~~pv~~ 97 (169)
.|.|+|.|.+.+.-.-... +|=-..++.+
T Consensus 68 ~L~p~t~Y~f~V~A~~~~G-~g~~S~~~~~ 96 (107)
T 1x5a_A 68 KLQPDTTYIVRVRTLTPLG-PGPFSPDHEF 96 (107)
T ss_dssp SCCSSCEEEEEEEEECSSS-CCCCCCCEEE
T ss_pred CCCCCCEEEEEEEEECCCc-cCCCCCCEEE
Confidence 4889999997665554332 2322245554
No 14
>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A 1ten_A
Probab=23.07 E-value=45 Score=21.77 Aligned_cols=30 Identities=13% Similarity=0.064 Sum_probs=18.5
Q ss_pred EccCCCeEEEEEEEEeccCcCCCcccCeEEEEEe
Q 030911 68 EVKRGKKYQIGFKISLKADAFGWSGCPVFMMAKL 101 (169)
Q Consensus 68 ~LSp~t~Y~ay~v~kl~~~a~Gw~~~pv~~~~~~ 101 (169)
.|.|+|.|.+.+.-.-.. |-. .|....+..
T Consensus 62 ~L~p~t~Y~~~V~A~~~~---g~s-~p~~~~~~T 91 (104)
T 2rb8_A 62 NLKPDTEYEVSLISRRGD---MSS-NPAKETFTT 91 (104)
T ss_dssp SCCTTCEEEEEEEEEETT---EEC-CCEEEEEEC
T ss_pred CCCCCCEEEEEEEEEeCC---ccC-CCEEEEEEC
Confidence 488999999876655432 333 455554444
No 15
>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens}
Probab=22.12 E-value=40 Score=23.02 Aligned_cols=16 Identities=25% Similarity=0.299 Sum_probs=12.0
Q ss_pred EccCCCeEEEEEEEEe
Q 030911 68 EVKRGKKYQIGFKISL 83 (169)
Q Consensus 68 ~LSp~t~Y~ay~v~kl 83 (169)
.|.|+|.|.+.+.-.-
T Consensus 88 gL~P~t~Y~~~V~A~~ 103 (121)
T 2ocf_D 88 GLKPGVDYTITVYAVT 103 (121)
T ss_dssp CCCTTCEEEEEEEEEC
T ss_pred CCCCCCEEEEEEEEEe
Confidence 4889999997665533
No 16
>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.10 E-value=1e+02 Score=20.75 Aligned_cols=16 Identities=6% Similarity=0.497 Sum_probs=12.4
Q ss_pred eEEEEecccceeEeCC
Q 030911 22 TEATIKPRGLNIVWGN 37 (169)
Q Consensus 22 kcymlsAR~L~I~Wgd 37 (169)
+.--+++..+.+.|.+
T Consensus 26 ~~~~~s~tsi~lsW~~ 41 (123)
T 2edd_A 26 QAVALTHDAVRVSWAD 41 (123)
T ss_dssp EEEEEETTEEEEEEEC
T ss_pred EEEEcCCCeEEEEecC
Confidence 4556788999999974
No 17
>3hwj_A E3 ubiquitin-protein ligase mycbp2; MYC-binding protein 2, PHR proteins, PHR domain, protein associated with MYC, PAM, PHR1, structural genomics; 2.25A {Mus musculus}
Probab=21.26 E-value=59 Score=24.71 Aligned_cols=27 Identities=22% Similarity=0.230 Sum_probs=20.5
Q ss_pred EccCCCeEEEEEEEEeccCcCCCcccC
Q 030911 68 EVKRGKKYQIGFKISLKADAFGWSGCP 94 (169)
Q Consensus 68 ~LSp~t~Y~ay~v~kl~~~a~Gw~~~p 94 (169)
.+.|++.|+|...++=.+..||=..++
T Consensus 100 ~i~pn~~Yta~a~l~G~~S~~G~~G~~ 126 (172)
T 3hwj_A 100 PLKENVKYAVRLRNYGSRTANGDGGMT 126 (172)
T ss_dssp ECCTTCCEEEEEEEESSCBCCEEEECS
T ss_pred EcCCCCeEEEEEEeCCCccccCCCCce
Confidence 588999999998877656666666544
No 18
>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix; 2.40A {Homo sapiens}
Probab=20.10 E-value=1.3e+02 Score=19.19 Aligned_cols=30 Identities=17% Similarity=0.169 Sum_probs=20.1
Q ss_pred EccCCCeEEEEEEEEeccCcCCCcccCeEEEEEe
Q 030911 68 EVKRGKKYQIGFKISLKADAFGWSGCPVFMMAKL 101 (169)
Q Consensus 68 ~LSp~t~Y~ay~v~kl~~~a~Gw~~~pv~~~~~~ 101 (169)
.|.|+|.|.+.+.-.- ..|.. .|+..+..+
T Consensus 61 ~L~p~t~Y~~~V~A~n---~~g~s-~p~~~~~~~ 90 (100)
T 3b83_A 61 NLEPNTTYEIRIVARN---GQQYS-PPVSTTFTT 90 (100)
T ss_dssp SCCTTCEEEEEEEEEE---TTEEC-CCEEEEEEC
T ss_pred CCCCCCEEEEEEEEEe---CCCCC-CCEEEEEEE
Confidence 4889999997655433 23665 577776555
Done!