BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030912
         (169 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3B8B|A Chain A, Crystal Structure Of Cysq From Bacteroides
           Thetaiotaomicron, A Bacterial Member Of The Inositol
           Monophosphatase Family
          Length = 292

 Score = 28.1 bits (61), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 4/68 (5%)

Query: 99  EEPEKSPMF----HLLSLEYRQHVADNLNRAILERPRYAAMERLIQQTTAVRQCLSQELG 154
           E+ E+ P+     H +++  R H+       I +  +      LI   ++++ CL  E  
Sbjct: 175 EKSERXPLADARDHFIAVASRSHLTPETETYIADLKKKHGNVELISSGSSIKICLVAEGK 234

Query: 155 KDVHPPFS 162
            DV+P F+
Sbjct: 235 ADVYPRFA 242


>pdb|3R23|A Chain A, Crystal Structure Of D-Alanine--D-Alanine Ligase From
          Bacillus Anthracis
 pdb|3R23|B Chain B, Crystal Structure Of D-Alanine--D-Alanine Ligase From
          Bacillus Anthracis
 pdb|3R5X|A Chain A, Crystal Structure Of D-Alanine--D-Alanine Ligase From
          Bacillus Anthracis Complexed With Atp
 pdb|3R5X|B Chain B, Crystal Structure Of D-Alanine--D-Alanine Ligase From
          Bacillus Anthracis Complexed With Atp
 pdb|3R5X|C Chain C, Crystal Structure Of D-Alanine--D-Alanine Ligase From
          Bacillus Anthracis Complexed With Atp
 pdb|3R5X|D Chain D, Crystal Structure Of D-Alanine--D-Alanine Ligase From
          Bacillus Anthracis Complexed With Atp
          Length = 307

 Score = 27.7 bits (60), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 21/34 (61%)

Query: 22 LEGNALKAIELTEELAQDLLEKNKDLHFDLLSLH 55
          L+ N  + + +T     DL+EK KD+ F LL+LH
Sbjct: 31 LDKNKYEIVPITLNEKXDLIEKAKDIDFALLALH 64


>pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain
           1
          Length = 311

 Score = 26.6 bits (57), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 16/74 (21%)

Query: 89  LEDFMALLAYEEPEKSPMFHLLSLEYRQHVADNLNRAILERPRYAAMERLIQQTTAVRQC 148
           LED      ++ P+ + M ++L+L YR            ++ +Y     L+    A+R+ 
Sbjct: 54  LEDLEKTSGHDHPDVATMLNILALVYR------------DQNKYKDAANLLNDALAIRE- 100

Query: 149 LSQELGKDVHPPFS 162
             + LGKD HP  +
Sbjct: 101 --KTLGKD-HPAVA 111


>pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
 pdb|3EDT|D Chain D, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
 pdb|3EDT|F Chain F, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
 pdb|3EDT|H Chain H, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
          Length = 283

 Score = 26.6 bits (57), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 16/74 (21%)

Query: 89  LEDFMALLAYEEPEKSPMFHLLSLEYRQHVADNLNRAILERPRYAAMERLIQQTTAVRQC 148
           LED      ++ P+ + M ++L+L YR            ++ +Y     L+    A+R+ 
Sbjct: 28  LEDLEKTSGHDHPDVATMLNILALVYR------------DQNKYKEAAHLLNDALAIRE- 74

Query: 149 LSQELGKDVHPPFS 162
             + LGKD HP  +
Sbjct: 75  --KTLGKD-HPAVA 85


>pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
 pdb|3CEQ|B Chain B, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
          Length = 283

 Score = 26.2 bits (56), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 16/74 (21%)

Query: 89  LEDFMALLAYEEPEKSPMFHLLSLEYRQHVADNLNRAILERPRYAAMERLIQQTTAVRQC 148
           LED      ++ P+ + M ++L+L YR            ++ +Y     L+    A+R+ 
Sbjct: 28  LEDLEKTSGHDHPDVATMLNILALVYR------------DQNKYKEAAHLLNDALAIRE- 74

Query: 149 LSQELGKDVHPPFS 162
             + LGKD HP  +
Sbjct: 75  --KTLGKD-HPAVA 85


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.135    0.384 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,630,146
Number of Sequences: 62578
Number of extensions: 165948
Number of successful extensions: 594
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 586
Number of HSP's gapped (non-prelim): 14
length of query: 169
length of database: 14,973,337
effective HSP length: 92
effective length of query: 77
effective length of database: 9,216,161
effective search space: 709644397
effective search space used: 709644397
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)