Query 030912
Match_columns 169
No_of_seqs 113 out of 583
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 09:56:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030912.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030912hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nxp_A Transcription initiatio 83.9 0.61 2.1E-05 34.4 2.6 107 30-139 35-146 (156)
2 3iko_C Nucleoporin NUP84; NPC, 69.7 4.9 0.00017 34.7 4.5 30 7-36 174-203 (460)
3 3sxm_A Transcriptional regulat 68.7 7.3 0.00025 26.7 4.6 34 6-39 95-128 (140)
4 2j4b_A TAF5, transcription ini 66.1 7.8 0.00027 27.8 4.3 61 30-94 16-77 (138)
5 2dna_A Unnamed protein product 64.5 5.7 0.00019 25.2 2.9 27 13-39 33-61 (67)
6 1whc_A RSGI RUH-027, UBA/UBX 3 59.9 9.6 0.00033 23.6 3.4 25 14-38 23-50 (64)
7 3hkz_Y DNA-directed RNA polyme 54.3 8.3 0.00028 25.9 2.4 39 5-43 38-78 (104)
8 2vxg_A LD41624, GE-1, CG6181-P 53.0 16 0.00055 26.3 4.1 28 13-40 3-31 (139)
9 3cuq_A Vacuolar-sorting protei 49.8 18 0.00061 28.4 4.1 77 67-143 22-105 (234)
10 2j49_A Transcription initiatio 48.1 8 0.00027 28.1 1.8 46 46-94 34-79 (148)
11 3c1q_A General secretion pathw 46.7 34 0.0012 23.0 4.9 23 15-37 19-42 (123)
12 1vek_A UBP14, ubiquitin-specif 45.2 21 0.00072 23.3 3.4 25 14-38 43-70 (84)
13 1u5t_A Appears to BE functiona 44.8 42 0.0014 26.3 5.6 76 66-142 41-123 (233)
14 2cp9_A EF-TS, EF-TSMT, elongat 42.7 14 0.00049 23.1 2.1 14 23-36 35-48 (64)
15 2di3_A Bacterial regulatory pr 41.5 33 0.0011 26.0 4.5 29 9-37 191-219 (239)
16 3dwl_G Actin-related protein 2 41.1 4 0.00014 30.1 -0.9 22 15-36 41-62 (152)
17 1hw1_A FADR, fatty acid metabo 41.0 27 0.00093 26.2 3.9 25 53-77 193-217 (239)
18 4a18_Q RPL36, 60S ribosomal pr 39.3 45 0.0015 22.9 4.3 32 49-80 51-85 (104)
19 3izc_k 60S ribosomal protein R 38.0 15 0.0005 25.1 1.7 46 49-94 50-95 (100)
20 1gng_X Frattide, glycogen synt 37.5 33 0.0011 19.2 2.8 23 14-36 13-36 (39)
21 2crn_A Ubash3A protein; compac 36.0 37 0.0013 20.9 3.3 25 14-38 23-50 (64)
22 2pm7_A Protein WEB1, protein t 35.7 24 0.00082 29.7 3.1 23 14-36 147-169 (399)
23 2jy5_A Ubiquilin-1; UBA, alter 35.7 36 0.0012 20.0 3.0 21 14-34 27-49 (52)
24 1ify_A HHR23A, UV excision rep 34.9 24 0.00082 20.5 2.1 25 14-38 22-48 (49)
25 1wr1_B Ubiquitin-like protein 34.3 47 0.0016 20.1 3.5 24 13-36 31-56 (58)
26 1vej_A Riken cDNA 4931431F19; 33.1 37 0.0013 21.7 3.0 24 13-36 43-68 (74)
27 3sjr_A Uncharacterized protein 32.7 1.2E+02 0.0041 22.4 6.0 61 34-95 102-163 (175)
28 2ekk_A UBA domain from E3 ubiq 32.2 42 0.0015 19.0 2.9 22 14-35 23-45 (47)
29 2vgx_A Chaperone SYCD; alterna 32.2 1.2E+02 0.004 20.5 6.2 54 16-77 27-83 (148)
30 3ma5_A Tetratricopeptide repea 32.1 92 0.0031 19.3 5.8 72 19-95 16-89 (100)
31 2dag_A Ubiquitin carboxyl-term 31.9 45 0.0015 21.1 3.2 27 14-40 23-52 (74)
32 3r8n_T 30S ribosomal protein S 31.3 51 0.0018 21.6 3.5 28 15-42 31-58 (85)
33 4ae4_A Ubiquitin-associated pr 30.7 37 0.0013 23.6 2.9 23 13-35 89-113 (118)
34 1wiv_A UBP14, ubiquitin-specif 30.4 52 0.0018 20.8 3.3 24 14-37 43-68 (73)
35 2cpw_A CBL-interacting protein 30.1 46 0.0016 20.4 3.0 23 14-36 33-58 (64)
36 2dai_A Ubadc1, ubiquitin assoc 29.0 36 0.0012 22.2 2.4 25 14-38 43-69 (83)
37 2dak_A Ubiquitin carboxyl-term 28.7 41 0.0014 20.5 2.5 26 14-39 23-50 (63)
38 4ayb_Q DNA-directed RNA polyme 28.5 1E+02 0.0035 20.5 4.6 37 6-42 39-77 (104)
39 2bwb_A Ubiquitin-like protein 28.5 29 0.00099 19.9 1.7 22 13-34 21-44 (46)
40 2knz_A Ubiquilin-4; cytoplasm, 28.4 28 0.00095 20.5 1.7 25 13-37 25-51 (53)
41 2dah_A Ubiquilin-3; UBA domain 28.4 35 0.0012 20.3 2.1 23 14-36 24-48 (54)
42 3frr_A Uncharacterized protein 28.3 90 0.0031 23.5 4.9 25 11-35 36-60 (191)
43 2dkl_A Trinucleotide repeat co 28.0 51 0.0018 21.5 3.1 25 14-38 35-61 (85)
44 2hl7_A Cytochrome C-type bioge 28.0 46 0.0016 21.8 2.8 29 11-39 46-75 (84)
45 3op1_A Macrolide-efflux protei 27.3 28 0.00095 28.3 2.0 23 15-37 168-190 (308)
46 2xcb_A PCRH, regulatory protei 26.9 1.2E+02 0.0039 20.0 5.0 54 16-77 24-80 (142)
47 4b4t_Q 26S proteasome regulato 26.3 1.9E+02 0.0065 22.5 6.9 87 1-97 1-105 (434)
48 1z96_A DNA-damage, UBA-domain 26.0 35 0.0012 18.3 1.7 11 23-33 29-39 (40)
49 2cwb_A Chimera of immunoglobul 25.9 54 0.0019 22.5 3.0 24 13-36 80-105 (108)
50 2vqe_T 30S ribosomal protein S 25.9 75 0.0026 21.8 3.7 29 15-43 38-66 (106)
51 2kw0_A CCMH protein; oxidoredu 25.5 54 0.0018 21.8 2.8 31 11-41 43-74 (90)
52 1wgn_A UBAP1, ubiquitin associ 25.4 43 0.0015 20.9 2.1 23 14-36 33-57 (63)
53 1wji_A Tudor domain containing 25.0 90 0.0031 19.0 3.6 24 14-37 23-48 (63)
54 2g3q_A Protein YBL047C; endocy 24.9 64 0.0022 17.7 2.8 13 23-35 29-41 (43)
55 3mzk_B Protein transport prote 24.8 53 0.0018 28.0 3.3 24 13-36 153-176 (441)
56 3mkr_B Coatomer subunit alpha; 23.9 99 0.0034 25.3 4.7 40 16-62 22-61 (320)
57 2lbc_A Ubiquitin carboxyl-term 23.4 55 0.0019 22.6 2.7 23 16-38 19-44 (126)
58 2x0k_A Riboflavin biosynthesis 22.9 43 0.0015 27.4 2.4 23 15-37 165-187 (338)
59 2rg8_A Programmed cell death p 22.9 1E+02 0.0036 22.3 4.3 34 4-37 2-37 (165)
60 3mv2_B Coatomer subunit epsilo 22.3 1.6E+02 0.0054 23.7 5.6 52 20-75 110-162 (310)
61 2kc7_A BFR218_protein; tetratr 21.7 1.4E+02 0.0047 17.8 7.7 61 16-80 6-66 (99)
62 4gcn_A Protein STI-1; structur 21.6 1.7E+02 0.0059 18.9 5.2 16 62-77 96-111 (127)
63 1k8k_G P16, ARP2/3 complex 16 21.5 50 0.0017 24.1 2.2 25 14-38 39-63 (151)
64 3gw4_A Uncharacterized protein 21.2 1.5E+02 0.0053 20.0 4.9 50 20-77 2-54 (203)
65 3mv2_A Coatomer subunit alpha; 21.0 1.1E+02 0.0037 25.1 4.4 41 15-62 33-73 (325)
66 2cos_A Serine/threonine protei 20.7 56 0.0019 19.7 1.9 14 23-36 33-48 (54)
67 1z7l_A Ubiquitin-activating en 20.1 1.7E+02 0.0059 23.1 5.4 21 25-45 25-45 (276)
No 1
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1
Probab=83.91 E-value=0.61 Score=34.43 Aligned_cols=107 Identities=13% Similarity=0.156 Sum_probs=66.2
Q ss_pred HHHHHHhchHHHccC-CcceehhchHHHHHHHhhhchHHHHHHHHhhcCCcCCchhhHHHHHHHHHHhccCCCCCCchhh
Q 030912 30 IELTEELAQDLLEKN-KDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEKSPMFH 108 (169)
Q Consensus 30 i~~i~~~~p~ll~~~-~~L~F~L~~q~fIElir~~~~~eAi~~ar~~l~~~~~~~~~~~el~~~~~LLay~~p~~sp~~~ 108 (169)
.+|++. .+++.+.. ..+.|=+-+.-|++||.+|...+|-.|-.++-..+. +.+..++++..++.--....+.++..
T Consensus 35 ~~wv~~-sld~yk~EL~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~--~~~~~~i~~L~~i~~~~~l~~n~~~~ 111 (156)
T 2nxp_A 35 KHFIEC-SLDCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQE--CYYQDDLRVLSSLTKKEHMKGNETML 111 (156)
T ss_dssp HHHHHT-SCHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSC--GGGHHHHHHHHTCCSHHHHTTCGGGG
T ss_pred HHHHHh-CcHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhH--HHHHHHHHHHhcCCCHHHHhhcHHHH
Confidence 456655 33333322 468899999999999999999999999988777765 56778888877765544444555443
Q ss_pred hC-CHHHHHHHHHHHHHHHhc---CCCchHHHHHH
Q 030912 109 LL-SLEYRQHVADNLNRAILE---RPRYAAMERLI 139 (169)
Q Consensus 109 Ll-~~~rr~~lA~~vn~aIL~---~~~~s~Le~l~ 139 (169)
.+ +...+-.+.......++. ..+.+.+-.++
T Consensus 112 ~fr~~Ky~I~ls~~s~~lL~~fL~~~~~~~ll~Ii 146 (156)
T 2nxp_A 112 DFRTSKFVLRISRDSYQLLKRHLQEKQNNQIWNIV 146 (156)
T ss_dssp GGCGGGSEEEEEHHHHHHHHHHHTTSTTCHHHHHH
T ss_pred HHHhCCeEEEECHHHHHHHHHHHHHcCChHHHHHH
Confidence 33 333333333333333333 33444444444
No 2
>3iko_C Nucleoporin NUP84; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.20A {Saccharomyces cerevisiae} PDB: 3jro_C
Probab=69.69 E-value=4.9 Score=34.66 Aligned_cols=30 Identities=27% Similarity=0.154 Sum_probs=24.6
Q ss_pred hHHhHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 030912 7 CLEDMEMRKRILHFALEGNALKAIELTEEL 36 (169)
Q Consensus 7 ~~~~~~~R~~I~~~I~~G~i~~Ai~~i~~~ 36 (169)
..+.-..-+.|..+|++|++++|++||++.
T Consensus 174 ~~~e~~l~~~i~~liR~G~~~eA~~lc~~~ 203 (460)
T 3iko_C 174 KEEDHIFFKYIYELILAGAIDEALEEAKLS 203 (460)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHc
Confidence 344455568899999999999999999875
No 3
>3sxm_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.55A {Thermotoga maritima} PDB: 3sxk_A 3sxz_A
Probab=68.72 E-value=7.3 Score=26.70 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=27.0
Q ss_pred hhHHhHHHHHHHHHHHHcCCHHHHHHHHHHhchH
Q 030912 6 NCLEDMEMRKRILHFALEGNALKAIELTEELAQD 39 (169)
Q Consensus 6 ~~~~~~~~R~~I~~~I~~G~i~~Ai~~i~~~~p~ 39 (169)
....++.....|.++|..||.+.|.+.+..|.-.
T Consensus 95 ~~~~~~~eH~~I~~Ai~~~D~~~A~~~~~~Hl~~ 128 (140)
T 3sxm_A 95 RYVVSNREHKELIERIISGDKEGAIEKLKEHLKN 128 (140)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456677888899999999999999988887543
No 4
>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1
Probab=66.06 E-value=7.8 Score=27.80 Aligned_cols=61 Identities=23% Similarity=0.326 Sum_probs=42.3
Q ss_pred HHHHHHhchHHHccC-CcceehhchHHHHHHHhhhchHHHHHHHHhhcCCcCCchhhHHHHHHHHH
Q 030912 30 IELTEELAQDLLEKN-KDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMA 94 (169)
Q Consensus 30 i~~i~~~~p~ll~~~-~~L~F~L~~q~fIElir~~~~~eAi~~ar~~l~~~~~~~~~~~el~~~~~ 94 (169)
.+|++. .+++.+.. ..+.|=+-+.-|++||.+|..++|-.|-.++-..+. .. ..+++...+
T Consensus 16 ~~wv~~-sld~yk~EL~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~--~~-~~~i~~L~~ 77 (138)
T 2j4b_A 16 KTWIED-SLDLFKNDLLPLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHY--NK-SEEIKQFES 77 (138)
T ss_dssp HHHHHH-SCHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC----C-HHHHHHHTT
T ss_pred HHHHHh-CcHhhHHHHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHh--hH-HHHHHHHhc
Confidence 466655 34444332 468899999999999999999999999887766664 22 555555544
No 5
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=64.48 E-value=5.7 Score=25.23 Aligned_cols=27 Identities=15% Similarity=0.009 Sum_probs=20.0
Q ss_pred HHHHHHHHHH--cCCHHHHHHHHHHhchH
Q 030912 13 MRKRILHFAL--EGNALKAIELTEELAQD 39 (169)
Q Consensus 13 ~R~~I~~~I~--~G~i~~Ai~~i~~~~p~ 39 (169)
+|....++++ .||++.|++|+-++-++
T Consensus 33 d~~an~~AL~at~Gnve~Ave~L~~~~~~ 61 (67)
T 2dna_A 33 NYNANLQALIATDGDTNAAIYKLKSSQGF 61 (67)
T ss_dssp CHHHHHHHHHHTTSCHHHHHHHHHHCCSS
T ss_pred cHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 4667566665 58999999999876553
No 6
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=59.88 E-value=9.6 Score=23.63 Aligned_cols=25 Identities=16% Similarity=0.044 Sum_probs=19.5
Q ss_pred HHHHHHHHH---cCCHHHHHHHHHHhch
Q 030912 14 RKRILHFAL---EGNALKAIELTEELAQ 38 (169)
Q Consensus 14 R~~I~~~I~---~G~i~~Ai~~i~~~~p 38 (169)
|.+.+.+++ +|+++.|++|+-++-+
T Consensus 23 ~~~a~~AL~~t~~~nve~A~ewLl~~~~ 50 (64)
T 1whc_A 23 RGRAEKALALTGNQGIEAAMDWLMEHED 50 (64)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhCCC
Confidence 566667766 5789999999988754
No 7
>3hkz_Y DNA-directed RNA polymerase subunit 13; archaea, metal-binding, nucleotidyltransferase, transcription, transferase, zinc, zinc-finger; 3.40A {Sulfolobus solfataricus}
Probab=54.31 E-value=8.3 Score=25.91 Aligned_cols=39 Identities=18% Similarity=0.153 Sum_probs=32.5
Q ss_pred hhhHHhHHHHHHHHHHHHcCC--HHHHHHHHHHhchHHHcc
Q 030912 5 ANCLEDMEMRKRILHFALEGN--ALKAIELTEELAQDLLEK 43 (169)
Q Consensus 5 ~~~~~~~~~R~~I~~~I~~G~--i~~Ai~~i~~~~p~ll~~ 43 (169)
-+|++-+-.+..||+-+.+|. |++|..+..+++...-+.
T Consensus 38 iqDIELL~KnTEIWdkLl~gkISIEEAKklFedn~~~y~kk 78 (104)
T 3hkz_Y 38 IQDIELLMRNTEIWDNLLNGKITLEEAKKLFEDNYKEYEKR 78 (104)
T ss_dssp CCCTTHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHhhhHHHHHHHcCcccHHHHHHHHHHHHHHHhhh
Confidence 367888889999999999997 799999998888665443
No 8
>2vxg_A LD41624, GE-1, CG6181-PA, isoform A; decapping, EDC4, hedls, mRNA decay, P-BODY, gene regulation; 1.9A {Drosophila melanogaster}
Probab=52.97 E-value=16 Score=26.29 Aligned_cols=28 Identities=21% Similarity=0.154 Sum_probs=21.2
Q ss_pred HHHHHHHHHHcCCHHHH-HHHHHHhchHH
Q 030912 13 MRKRILHFALEGNALKA-IELTEELAQDL 40 (169)
Q Consensus 13 ~R~~I~~~I~~G~i~~A-i~~i~~~~p~l 40 (169)
-|.+|.++|.+|++++| ..|+....-++
T Consensus 3 ~~~~I~~Ll~~g~~eeAf~~aL~ssd~~l 31 (139)
T 2vxg_A 3 MGDSIKQLLMAGQINKAFHQALLANDLGL 31 (139)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHhCcHHH
Confidence 46779999999999999 56666544333
No 9
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=49.76 E-value=18 Score=28.42 Aligned_cols=77 Identities=16% Similarity=0.214 Sum_probs=55.5
Q ss_pred HHHHHHHhhcCCcCCchhhHHHHHHHHHHhccCCCCCCc--hhhhCCH-HHHHHHHHHHHHHHhc----CCCchHHHHHH
Q 030912 67 EALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEKSP--MFHLLSL-EYRQHVADNLNRAILE----RPRYAAMERLI 139 (169)
Q Consensus 67 eAi~~ar~~l~~~~~~~~~~~el~~~~~LLay~~p~~sp--~~~Ll~~-~rr~~lA~~vn~aIL~----~~~~s~Le~l~ 139 (169)
.-.+||++|-....+||.+..++++.++.|--++..++. +++++.. +....||-+|-...+. +-+.-.|..++
T Consensus 22 ~L~~FA~kH~~eI~~dp~fR~~F~~mc~siGVDPlas~kg~ws~~lG~gdfy~eLavqIvEvC~~tr~~nGGli~L~el~ 101 (234)
T 3cuq_A 22 NLEEFASKHKQEIRKNPEFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLEELH 101 (234)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTCCTTSCTTSHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHSSEEEHHHHH
T ss_pred HHHHHHHHcccccccCHHHHHHHHHHHHHcCCCcccCCcchhhhhcCcchHHHHHHHHHHHHHHHHHHhcCCeeEHHHHH
Confidence 345789988777777899999999999999999544443 3445543 5568889888876666 34666677776
Q ss_pred HHHH
Q 030912 140 QQTT 143 (169)
Q Consensus 140 k~~~ 143 (169)
+.+.
T Consensus 102 ~~~~ 105 (234)
T 3cuq_A 102 QQVL 105 (234)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 10
>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1
Probab=48.05 E-value=8 Score=28.15 Aligned_cols=46 Identities=13% Similarity=0.175 Sum_probs=34.3
Q ss_pred cceehhchHHHHHHHhhhchHHHHHHHHhhcCCcCCchhhHHHHHHHHH
Q 030912 46 DLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMA 94 (169)
Q Consensus 46 ~L~F~L~~q~fIElir~~~~~eAi~~ar~~l~~~~~~~~~~~el~~~~~ 94 (169)
.|.|=+-|.-|++||.+| .++|-.|-.++-..+. +.+..+++.+.+
T Consensus 34 ~lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~--~~~~~~i~~L~~ 79 (148)
T 2j49_A 34 YIMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFK--DFHGSEINRLFS 79 (148)
T ss_dssp HHHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGH--HHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhH--HHHHHHHHHHhc
Confidence 578999999999999999 9999888887666554 334455554433
No 11
>3c1q_A General secretion pathway protein F; type 2 secretion system, T2SS, T4PB, inner membrane membrane, transmembrane, transport protein; HET: MSE PE5; 1.70A {Vibrio cholerae} PDB: 2vmb_A* 2vma_A*
Probab=46.66 E-value=34 Score=22.98 Aligned_cols=23 Identities=9% Similarity=0.215 Sum_probs=14.4
Q ss_pred HHHHHHHHcC-CHHHHHHHHHHhc
Q 030912 15 KRILHFALEG-NALKAIELTEELA 37 (169)
Q Consensus 15 ~~I~~~I~~G-~i~~Ai~~i~~~~ 37 (169)
..+-.++.+| .+.+|++.+.+..
T Consensus 19 ~~La~ll~sGv~l~~aL~~~~~~~ 42 (123)
T 3c1q_A 19 RQLATLVQSGMPLEECLRAVAEQS 42 (123)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHc
Confidence 4455566677 5777777766543
No 12
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=45.23 E-value=21 Score=23.33 Aligned_cols=25 Identities=8% Similarity=-0.003 Sum_probs=19.8
Q ss_pred HHHHHHHHH-c--CCHHHHHHHHHHhch
Q 030912 14 RKRILHFAL-E--GNALKAIELTEELAQ 38 (169)
Q Consensus 14 R~~I~~~I~-~--G~i~~Ai~~i~~~~p 38 (169)
|.+.+++++ . |+++.|++|+-+|.+
T Consensus 43 ~~~a~~AL~~t~n~n~e~A~ewL~~h~~ 70 (84)
T 1vek_A 43 QLHCQKAAINTSNAGVEEAMNWLLSHMD 70 (84)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 677888865 3 589999999988754
No 13
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=44.85 E-value=42 Score=26.26 Aligned_cols=76 Identities=12% Similarity=0.187 Sum_probs=56.2
Q ss_pred HHHHHHHHhhcCCcCCchhhHHHHHHHHHHhccCCCCC-Cch-hhhCCH-HHHHHHHHHHHHHHhc----CCCchHHHHH
Q 030912 66 TEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEK-SPM-FHLLSL-EYRQHVADNLNRAILE----RPRYAAMERL 138 (169)
Q Consensus 66 ~eAi~~ar~~l~~~~~~~~~~~el~~~~~LLay~~p~~-sp~-~~Ll~~-~rr~~lA~~vn~aIL~----~~~~s~Le~l 138 (169)
..-.+||++|-....+||.+..++++.|+.|--+ |-. |+- ++++.. +....||-+|-...+. +-+.-.|..+
T Consensus 41 ~~L~~FA~kHk~eI~~dp~fR~~F~~mc~siGVD-PLa~s~kg~~~lg~gdfy~eLavqIvEvC~~tr~~nGGli~l~el 119 (233)
T 1u5t_A 41 ERLVEFAKKHNSELQASPEFRSKFMHMCSSIGID-PLSLFDRDKHLFTVNDFYYEVCLKVIEICRQTKDMNGGVISFQEL 119 (233)
T ss_dssp HHHHHHHHHCTTTTTTCHHHHHHHHHHHHHHTCC-HHHHTTSSGGGTTHHHHHHHHHHHHHHHHHHHTTTSSSCEEHHHH
T ss_pred HHHHHHHHHhHhhcccCHHHHHHHHHHHHHcCCC-CCccCCccccccCcchHHHHHHHHHHHHHHHHHHhcCCeeEHHHH
Confidence 3455899999988888999999999999999988 432 332 456654 5668999998887777 3356666666
Q ss_pred HHHH
Q 030912 139 IQQT 142 (169)
Q Consensus 139 ~k~~ 142 (169)
++.+
T Consensus 120 ~~~~ 123 (233)
T 1u5t_A 120 EKVH 123 (233)
T ss_dssp HHTT
T ss_pred HHHH
Confidence 6654
No 14
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=42.71 E-value=14 Score=23.08 Aligned_cols=14 Identities=14% Similarity=0.003 Sum_probs=12.3
Q ss_pred cCCHHHHHHHHHHh
Q 030912 23 EGNALKAIELTEEL 36 (169)
Q Consensus 23 ~G~i~~Ai~~i~~~ 36 (169)
+||++.|+.|+.+.
T Consensus 35 ~GDi~~Ai~~Lr~k 48 (64)
T 2cp9_A 35 GGDLKQAEIWLHKE 48 (64)
T ss_dssp TSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 68999999999764
No 15
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=41.52 E-value=33 Score=25.97 Aligned_cols=29 Identities=21% Similarity=0.133 Sum_probs=17.9
Q ss_pred HhHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q 030912 9 EDMEMRKRILHFALEGNALKAIELTEELA 37 (169)
Q Consensus 9 ~~~~~R~~I~~~I~~G~i~~Ai~~i~~~~ 37 (169)
.++.....|.++|..||.+.|.+.+.+|.
T Consensus 191 ~~~~eH~~I~~Ai~~~D~~~A~~~m~~Hl 219 (239)
T 2di3_A 191 RLQKEHRAILAALRAGESTVAATLIKEHI 219 (239)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34555566666666666666666666553
No 16
>3dwl_G Actin-related protein 2/3 complex subunit 5; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=41.05 E-value=4 Score=30.15 Aligned_cols=22 Identities=18% Similarity=0.161 Sum_probs=14.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHh
Q 030912 15 KRILHFALEGNALKAIELTEEL 36 (169)
Q Consensus 15 ~~I~~~I~~G~i~~Ai~~i~~~ 36 (169)
.+||.+|..|+..+|+..+=++
T Consensus 41 ~qvr~lL~~g~~~~ALk~aL~~ 62 (152)
T 3dwl_G 41 PQARSAIQTGNALQGLKTLLSY 62 (152)
T ss_dssp HHHHHHHHHSCCHHHHHHHTSS
T ss_pred HHHHHHHHCCCHHHHHHHHHhC
Confidence 5666677777777776666443
No 17
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=40.98 E-value=27 Score=26.24 Aligned_cols=25 Identities=8% Similarity=-0.035 Sum_probs=17.3
Q ss_pred hHHHHHHHhhhchHHHHHHHHhhcC
Q 030912 53 SLHFVELVCSRKCTEALEFAQTKLT 77 (169)
Q Consensus 53 ~q~fIElir~~~~~eAi~~ar~~l~ 77 (169)
.+..++.|++|+.+.|-+..+.|+.
T Consensus 193 H~~I~~Ai~~~D~~~A~~~m~~Hl~ 217 (239)
T 1hw1_A 193 YHKLSALCSEGAHDQVYETVRRYGH 217 (239)
T ss_dssp HHHHHHHHHHTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3566777777777777777777764
No 18
>4a18_Q RPL36, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_Q 4a1b_Q 4a1d_Q
Probab=39.28 E-value=45 Score=22.88 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=27.0
Q ss_pred ehhchHHHHHHHhhhc---hHHHHHHHHhhcCCcC
Q 030912 49 FDLLSLHFVELVCSRK---CTEALEFAQTKLTPFG 80 (169)
Q Consensus 49 F~L~~q~fIElir~~~---~~eAi~~ar~~l~~~~ 80 (169)
|-=+-.+-+||++.++ --.|+.|+++.+..+.
T Consensus 51 faPYErR~mELLKvsk~~~dKRAlKf~KKRlGth~ 85 (104)
T 4a18_Q 51 FAPYEKRIIELIKAGSAKDSKKATKIARKRLGTHR 85 (104)
T ss_dssp CCHHHHHHHHHHHHCSHHHHHHHHHHHHHHHCSHH
T ss_pred CchhHHHHHHHHHcccchhhHHHHHHHHHHhhhHH
Confidence 4455678899999998 7899999999998875
No 19
>3izc_k 60S ribosomal protein RPL36 (L36E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_k 3u5e_i 3u5i_i 4b6a_i
Probab=37.98 E-value=15 Score=25.14 Aligned_cols=46 Identities=17% Similarity=0.348 Sum_probs=32.1
Q ss_pred ehhchHHHHHHHhhhchHHHHHHHHhhcCCcCCchhhHHHHHHHHH
Q 030912 49 FDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMA 94 (169)
Q Consensus 49 F~L~~q~fIElir~~~~~eAi~~ar~~l~~~~~~~~~~~el~~~~~ 94 (169)
|-=+-.+-+||++.++--.|+.|+++.+..+..--.-.+|+..+.+
T Consensus 50 faPYErr~mELLkvskdKrAlKf~KKRlGth~RAKrKreel~~vl~ 95 (100)
T 3izc_k 50 LSPYERRLIDLIRNSGEKRARKVAKKRLGSFTRAKAKVEEMNNIIA 95 (100)
T ss_dssp HTTSCCHHHHHHHHHTSCCSHHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3344557899999999899999999998877631233445555443
No 20
>1gng_X Frattide, glycogen synthase kinase-3 beta; transferase, protein kinase, GSK3/frattide complex, phosphorylated, active; HET: PTR; 2.6A {Homo sapiens}
Probab=37.52 E-value=33 Score=19.15 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=17.7
Q ss_pred HHHHHHHHHcCC-HHHHHHHHHHh
Q 030912 14 RKRILHFALEGN-ALKAIELTEEL 36 (169)
Q Consensus 14 R~~I~~~I~~G~-i~~Ai~~i~~~ 36 (169)
-..+++++++|+ |.+|+..++.+
T Consensus 13 ~~lLQ~Llr~G~LIkEAVrRlq~~ 36 (39)
T 1gng_X 13 HRLLQQLVLSGNLIKEAVRRLHSR 36 (39)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHC-
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHc
Confidence 356788999998 88998887654
No 21
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=36.02 E-value=37 Score=20.93 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=18.7
Q ss_pred HHHHHHHHHc-C--CHHHHHHHHHHhch
Q 030912 14 RKRILHFALE-G--NALKAIELTEELAQ 38 (169)
Q Consensus 14 R~~I~~~I~~-G--~i~~Ai~~i~~~~p 38 (169)
|.+.++++.. | +++.|++|+-+|-+
T Consensus 23 ~~~a~~AL~~t~n~~~e~A~~wL~~h~~ 50 (64)
T 2crn_A 23 VHTALKALAATGRKTAEEALAWLHDHCN 50 (64)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhCCC
Confidence 5666667663 3 79999999988754
No 22
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=35.69 E-value=24 Score=29.67 Aligned_cols=23 Identities=22% Similarity=0.183 Sum_probs=19.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHh
Q 030912 14 RKRILHFALEGNALKAIELTEEL 36 (169)
Q Consensus 14 R~~I~~~I~~G~i~~Ai~~i~~~ 36 (169)
=..|.++|+.||++.|+++|-+.
T Consensus 147 d~~I~~aLl~Gd~e~AV~~cl~~ 169 (399)
T 2pm7_A 147 EQTISKNLVSGNIKSAVKNSLEN 169 (399)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHC
Confidence 45699999999999999999543
No 23
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=35.66 E-value=36 Score=19.97 Aligned_cols=21 Identities=29% Similarity=0.232 Sum_probs=14.8
Q ss_pred HHHHHHHHH--cCCHHHHHHHHH
Q 030912 14 RKRILHFAL--EGNALKAIELTE 34 (169)
Q Consensus 14 R~~I~~~I~--~G~i~~Ai~~i~ 34 (169)
|..++.++. .||++.|++|+-
T Consensus 27 ~~~~~~AL~~t~gn~e~A~e~L~ 49 (52)
T 2jy5_A 27 REANLQALIATGGDINAAIERLL 49 (52)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHH
Confidence 555555544 478999999984
No 24
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=34.88 E-value=24 Score=20.47 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=18.6
Q ss_pred HHHHHHHHHc--CCHHHHHHHHHHhch
Q 030912 14 RKRILHFALE--GNALKAIELTEELAQ 38 (169)
Q Consensus 14 R~~I~~~I~~--G~i~~Ai~~i~~~~p 38 (169)
|..++.+++. ||++.|++|+-..-|
T Consensus 22 ~~~a~~AL~~~~~n~e~A~e~L~~gip 48 (49)
T 1ify_A 22 RERVVAALRASYNNPHRAVEYLLTGIP 48 (49)
T ss_dssp HHHHHHHHHTTTSCSHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhCCC
Confidence 6677777764 589999999866443
No 25
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=34.34 E-value=47 Score=20.09 Aligned_cols=24 Identities=13% Similarity=-0.083 Sum_probs=16.6
Q ss_pred HHHHHHHHHH--cCCHHHHHHHHHHh
Q 030912 13 MRKRILHFAL--EGNALKAIELTEEL 36 (169)
Q Consensus 13 ~R~~I~~~I~--~G~i~~Ai~~i~~~ 36 (169)
+|..++.++. .||++.|++|+-.+
T Consensus 31 d~~~~~~AL~~~~gnve~Ave~L~~~ 56 (58)
T 1wr1_B 31 DFDRNVAALRRSGGSVQGALDSLLNG 56 (58)
T ss_dssp CHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred cHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 3556555554 57999999998553
No 26
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=33.09 E-value=37 Score=21.73 Aligned_cols=24 Identities=25% Similarity=0.255 Sum_probs=17.6
Q ss_pred HHHHHHHHHH--cCCHHHHHHHHHHh
Q 030912 13 MRKRILHFAL--EGNALKAIELTEEL 36 (169)
Q Consensus 13 ~R~~I~~~I~--~G~i~~Ai~~i~~~ 36 (169)
+|..++.+++ .||++.|++|+-.+
T Consensus 43 dr~~~~~AL~~t~Gnve~Ave~L~~~ 68 (74)
T 1vej_A 43 NRDANLQALVATDGDIHAAIEMLLGA 68 (74)
T ss_dssp CHHHHHHHHHHTTSCHHHHHHHHHTC
T ss_pred cHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 3666666665 57899999998654
No 27
>3sjr_A Uncharacterized protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; 2.94A {Chromobacterium violaceum}
Probab=32.70 E-value=1.2e+02 Score=22.44 Aligned_cols=61 Identities=15% Similarity=0.133 Sum_probs=40.5
Q ss_pred HHhchHHHccCCcceehhchHHHHHHHhhhchHHHHHHHHhhcCCcCC-chhhHHHHHHHHHH
Q 030912 34 EELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGK-VQKYVEKLEDFMAL 95 (169)
Q Consensus 34 ~~~~p~ll~~~~~L~F~L~~q~fIElir~~~~~eAi~~ar~~l~~~~~-~~~~~~el~~~~~L 95 (169)
...|+.--+.|+++.+.=..+.|+++|+.| ++.-..-||..|..+.= ++..-..|.++..|
T Consensus 102 T~FF~~yq~qhPd~~~ee~L~~Fm~lIgGG-iEqGF~EArdIL~GL~VleG~IA~~IdkTY~L 163 (175)
T 3sjr_A 102 EILMELYRQQHPDWTAPAIRQAFAPLARAG-LERGYQEACQVLRQLNVYTPAVAGQLQGLLLL 163 (175)
T ss_dssp HHHHHHHHHTCSSSCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHH-HHHhHHHHHHHHhhccccCcHHHHhHHHHHHH
Confidence 334455556789999999999999999954 56666667766655431 34445555555544
No 28
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.24 E-value=42 Score=18.99 Aligned_cols=22 Identities=14% Similarity=0.039 Sum_probs=15.0
Q ss_pred HHHHHHHH-HcCCHHHHHHHHHH
Q 030912 14 RKRILHFA-LEGNALKAIELTEE 35 (169)
Q Consensus 14 R~~I~~~I-~~G~i~~Ai~~i~~ 35 (169)
|...+.++ .+|+++.|++|+-.
T Consensus 23 ~~~a~~AL~~~~n~e~A~~~L~~ 45 (47)
T 2ekk_A 23 REHAMEALLNTSTMEQATEYLLT 45 (47)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHc
Confidence 44444444 35799999999854
No 29
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=32.19 E-value=1.2e+02 Score=20.47 Aligned_cols=54 Identities=9% Similarity=-0.072 Sum_probs=30.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHhchHHHccCC---cceehhchHHHHHHHhhhchHHHHHHHHhhcC
Q 030912 16 RILHFALEGNALKAIELTEELAQDLLEKNK---DLHFDLLSLHFVELVCSRKCTEALEFAQTKLT 77 (169)
Q Consensus 16 ~I~~~I~~G~i~~Ai~~i~~~~p~ll~~~~---~L~F~L~~q~fIElir~~~~~eAi~~ar~~l~ 77 (169)
.-......|+.++|++..++ ++..++ ...+.| =.-+...|+.++|+.+-++-+.
T Consensus 27 ~g~~~~~~g~~~~A~~~~~~----al~~~p~~~~~~~~l----g~~~~~~g~~~~A~~~~~~al~ 83 (148)
T 2vgx_A 27 LAFNQYQSGXYEDAHXVFQA----LCVLDHYDSRFFLGL----GACRQAMGQYDLAIHSYSYGAV 83 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHH----HHHHCTTCHHHHHHH----HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHH----HHHcCcccHHHHHHH----HHHHHHHhhHHHHHHHHHHHHh
Confidence 34556788999999888764 222222 222221 1122355777888877776543
No 30
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=32.13 E-value=92 Score=19.28 Aligned_cols=72 Identities=18% Similarity=0.106 Sum_probs=39.7
Q ss_pred HHHHcCCHHHHHHHHHHhchHHHccCCcceehhchHHHHHHHhhhchHHHHHHHHhhcCCcCC--chhhHHHHHHHHHH
Q 030912 19 HFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGK--VQKYVEKLEDFMAL 95 (169)
Q Consensus 19 ~~I~~G~i~~Ai~~i~~~~p~ll~~~~~L~F~L~~q~fIElir~~~~~eAi~~ar~~l~~~~~--~~~~~~el~~~~~L 95 (169)
-....|+.+.|++++++.- .+-..+....+.| =.-+...|+.++|+++-++-+.-... +.....+++.+++-
T Consensus 16 ~~~~~g~~~~A~~~~~~al-~~~p~~~~a~~~l----g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~~~l~~ 89 (100)
T 3ma5_A 16 EHLKHDNASRALALFEELV-ETDPDYVGTYYHL----GKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDAKLK 89 (100)
T ss_dssp HHHHTTCHHHHHHHHHHHH-HHSTTCTHHHHHH----HHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH-HhCCCcHHHHHHH----HHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHH
Confidence 4567899999999886532 1111222222222 11234568889998888766543221 33445555555553
No 31
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.90 E-value=45 Score=21.13 Aligned_cols=27 Identities=11% Similarity=-0.064 Sum_probs=19.6
Q ss_pred HHHHHHHHHc--C-CHHHHHHHHHHhchHH
Q 030912 14 RKRILHFALE--G-NALKAIELTEELAQDL 40 (169)
Q Consensus 14 R~~I~~~I~~--G-~i~~Ai~~i~~~~p~l 40 (169)
|.+.+++++. | +++.|++|+-+|.++.
T Consensus 23 ~~~a~~AL~~t~n~~ve~A~ewL~~~~~d~ 52 (74)
T 2dag_A 23 MDACRKAVYYTGNSGAEAAMNWVMSHMDDP 52 (74)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhCCCCc
Confidence 5666666654 2 6999999998876543
No 32
>3r8n_T 30S ribosomal protein S20; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_T 3fih_T* 3j18_T* 2wwl_T 3oar_T 3oaq_T 3ofb_T 3ofa_T 3ofp_T 3ofx_T 3ofy_T 3ofo_T 3r8o_T 4a2i_T 4gd1_T 4gd2_T 2qal_T* 1p6g_T 1p87_T 2aw7_T ...
Probab=31.30 E-value=51 Score=21.64 Aligned_cols=28 Identities=14% Similarity=0.106 Sum_probs=21.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhchHHHc
Q 030912 15 KRILHFALEGNALKAIELTEELAQDLLE 42 (169)
Q Consensus 15 ~~I~~~I~~G~i~~Ai~~i~~~~p~ll~ 42 (169)
+.++.+|..||.+.|.+.+..-+|.|-.
T Consensus 31 Kk~~~Ai~~gd~~~A~~~l~~a~~~iDk 58 (85)
T 3r8n_T 31 KKVYAAIEAGDKAAAQKAFNEMQPIVDR 58 (85)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3456788889999999988887776654
No 33
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=30.67 E-value=37 Score=23.57 Aligned_cols=23 Identities=22% Similarity=0.082 Sum_probs=18.3
Q ss_pred HHHHHHHHHH--cCCHHHHHHHHHH
Q 030912 13 MRKRILHFAL--EGNALKAIELTEE 35 (169)
Q Consensus 13 ~R~~I~~~I~--~G~i~~Ai~~i~~ 35 (169)
.+..|+.+++ +||++.|++|+-.
T Consensus 89 ~~~~a~~AL~~~~nd~erAlewL~~ 113 (118)
T 4ae4_A 89 ELKDIKEVLLLHNNDQDNALEDLMA 113 (118)
T ss_dssp CHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3678888884 5799999999854
No 34
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=30.44 E-value=52 Score=20.77 Aligned_cols=24 Identities=13% Similarity=-0.033 Sum_probs=17.9
Q ss_pred HHHHHHHHH--cCCHHHHHHHHHHhc
Q 030912 14 RKRILHFAL--EGNALKAIELTEELA 37 (169)
Q Consensus 14 R~~I~~~I~--~G~i~~Ai~~i~~~~ 37 (169)
|.+.+.+++ .|+++.|++|+-.+.
T Consensus 43 ~~~a~~AL~~t~~nve~Ave~L~~~~ 68 (73)
T 1wiv_A 43 EDVARKALKASGGDIEKATDWVFNNS 68 (73)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 666677666 568999999996643
No 35
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=30.09 E-value=46 Score=20.43 Aligned_cols=23 Identities=17% Similarity=0.063 Sum_probs=16.8
Q ss_pred HHHHHHHHH--cC-CHHHHHHHHHHh
Q 030912 14 RKRILHFAL--EG-NALKAIELTEEL 36 (169)
Q Consensus 14 R~~I~~~I~--~G-~i~~Ai~~i~~~ 36 (169)
|.+.+.+++ .| +++.|++|+-++
T Consensus 33 ~~~a~~AL~~t~~~nve~A~ewL~~~ 58 (64)
T 2cpw_A 33 RARAQKALASTGGRSVQTACDWLFSH 58 (64)
T ss_dssp HHHHHHHHHHTTTSCHHHHHHHHHSC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHhC
Confidence 566666665 34 799999999654
No 36
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.03 E-value=36 Score=22.20 Aligned_cols=25 Identities=20% Similarity=0.082 Sum_probs=18.1
Q ss_pred HHHHHHHHH--cCCHHHHHHHHHHhch
Q 030912 14 RKRILHFAL--EGNALKAIELTEELAQ 38 (169)
Q Consensus 14 R~~I~~~I~--~G~i~~Ai~~i~~~~p 38 (169)
|.+.+.+++ .|+++.|++|+-+|..
T Consensus 43 ~~~a~~AL~~t~~nve~A~ewL~~~~~ 69 (83)
T 2dai_A 43 ENRATKALQLNHMSVPQAMEWLIEHAE 69 (83)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence 455555555 5689999999988743
No 37
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.67 E-value=41 Score=20.46 Aligned_cols=26 Identities=15% Similarity=0.153 Sum_probs=18.5
Q ss_pred HHHHHHHHH--cCCHHHHHHHHHHhchH
Q 030912 14 RKRILHFAL--EGNALKAIELTEELAQD 39 (169)
Q Consensus 14 R~~I~~~I~--~G~i~~Ai~~i~~~~p~ 39 (169)
|.+.+.+++ .|+++.|++|+-.+.++
T Consensus 23 ~~~a~~AL~~t~~nve~A~e~L~~~~~d 50 (63)
T 2dak_A 23 RDQALKALRATNNSLERAVDWIFSHIDD 50 (63)
T ss_dssp HHHHHHHHHHTTSCSHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 455555554 46899999999887654
No 38
>4ayb_Q DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_J 4b1o_Q 4b1p_J 2y0s_J 2waq_Q
Probab=28.52 E-value=1e+02 Score=20.55 Aligned_cols=37 Identities=22% Similarity=0.158 Sum_probs=28.5
Q ss_pred hhHHhHHHHHHHHHHHHcCC--HHHHHHHHHHhchHHHc
Q 030912 6 NCLEDMEMRKRILHFALEGN--ALKAIELTEELAQDLLE 42 (169)
Q Consensus 6 ~~~~~~~~R~~I~~~I~~G~--i~~Ai~~i~~~~p~ll~ 42 (169)
+|++-+-.-..||+-+++|. |++|-.+...++...-+
T Consensus 39 qDIElLmKnTEIWd~Ll~gkISIeEAKK~Fedn~~~yek 77 (104)
T 4ayb_Q 39 QDIELLMKNTEIWDNLLNGKISVDEAKRLFEDNYKDYEK 77 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhchHHHHHHHcCcccHHHHHHHHHHHHHHHHh
Confidence 45566666789999999996 89999988887755433
No 39
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=28.49 E-value=29 Score=19.91 Aligned_cols=22 Identities=14% Similarity=-0.038 Sum_probs=15.6
Q ss_pred HHHHHHHHHH--cCCHHHHHHHHH
Q 030912 13 MRKRILHFAL--EGNALKAIELTE 34 (169)
Q Consensus 13 ~R~~I~~~I~--~G~i~~Ai~~i~ 34 (169)
+|..++.++. .||++.|++|+-
T Consensus 21 d~~~~~~AL~~~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 21 DFDRNVAALRRSGGSVQGALDSLL 44 (46)
T ss_dssp CHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3555555544 589999999973
No 40
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=28.44 E-value=28 Score=20.54 Aligned_cols=25 Identities=24% Similarity=0.125 Sum_probs=17.4
Q ss_pred HHHHHHHHHH--cCCHHHHHHHHHHhc
Q 030912 13 MRKRILHFAL--EGNALKAIELTEELA 37 (169)
Q Consensus 13 ~R~~I~~~I~--~G~i~~Ai~~i~~~~ 37 (169)
.|..++.++. .||++.|++|+-.+-
T Consensus 25 ~~~~~~~AL~~t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 25 NREANLQALIATGGDINAAIERLLGSQ 51 (53)
T ss_dssp CHHHHHHHHHHHTSCHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 3555555544 578999999996653
No 41
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=28.39 E-value=35 Score=20.30 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=16.1
Q ss_pred HHHHHHHHH--cCCHHHHHHHHHHh
Q 030912 14 RKRILHFAL--EGNALKAIELTEEL 36 (169)
Q Consensus 14 R~~I~~~I~--~G~i~~Ai~~i~~~ 36 (169)
+...+.++. .||++.|++|+-.+
T Consensus 24 ~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 24 REANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 444444443 68999999999654
No 42
>3frr_A Uncharacterized protein KIAA0174; ESCRT, ESCRT-III, CHMP, IST1, alternative splicing, phosphoprotein, protein binding; 1.80A {Homo sapiens} PDB: 3frs_A
Probab=28.25 E-value=90 Score=23.52 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q 030912 11 MEMRKRILHFALEGNALKAIELTEE 35 (169)
Q Consensus 11 ~~~R~~I~~~I~~G~i~~Ai~~i~~ 35 (169)
-..|++|-+++..|..+.|.-.+..
T Consensus 36 k~~RrdIA~LL~~gk~~~AriRvE~ 60 (191)
T 3frr_A 36 QKARKEIADYLAAGKDERARIRVEH 60 (191)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3569999999999999999888855
No 43
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=28.04 E-value=51 Score=21.53 Aligned_cols=25 Identities=16% Similarity=-0.098 Sum_probs=18.5
Q ss_pred HHHHHHHHHc--CCHHHHHHHHHHhch
Q 030912 14 RKRILHFALE--GNALKAIELTEELAQ 38 (169)
Q Consensus 14 R~~I~~~I~~--G~i~~Ai~~i~~~~p 38 (169)
|...++++.. |+++.|++|+-.|.-
T Consensus 35 ~~~a~~AL~~~n~n~e~A~ewL~~h~~ 61 (85)
T 2dkl_A 35 REPAEEALKSNNMNLDQAMSALLEKKV 61 (85)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHCcC
Confidence 6666777765 579999999977643
No 44
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=28.01 E-value=46 Score=21.82 Aligned_cols=29 Identities=17% Similarity=0.221 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHcCCHHHH-HHHHHHhchH
Q 030912 11 MEMRKRILHFALEGNALKA-IELTEELAQD 39 (169)
Q Consensus 11 ~~~R~~I~~~I~~G~i~~A-i~~i~~~~p~ 39 (169)
-+.|..|++.|..|+.+.. ++++-+.|-+
T Consensus 46 ~dlR~~V~~~l~~G~sd~eI~~~~v~RYG~ 75 (84)
T 2hl7_A 46 ADLRKQIYGQLQQGKSDGEIVDYMVARYGD 75 (84)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhcCC
Confidence 4679999999999987765 6777776643
No 45
>3op1_A Macrolide-efflux protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PEG; 2.49A {Streptococcus pneumoniae}
Probab=27.28 E-value=28 Score=28.31 Aligned_cols=23 Identities=30% Similarity=0.270 Sum_probs=20.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhc
Q 030912 15 KRILHFALEGNALKAIELTEELA 37 (169)
Q Consensus 15 ~~I~~~I~~G~i~~Ai~~i~~~~ 37 (169)
..||++|.+|+++.|-+++-..|
T Consensus 168 T~IR~~L~~G~v~~A~~lLGrpy 190 (308)
T 3op1_A 168 TRIRQAILDGNVKEAGKLLGAPL 190 (308)
T ss_dssp HHHHHHHHHTCHHHHHHHHSSCC
T ss_pred HHHHHHHHcCCHHHHHhhcCcce
Confidence 67999999999999999997655
No 46
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=26.88 E-value=1.2e+02 Score=19.95 Aligned_cols=54 Identities=11% Similarity=-0.100 Sum_probs=32.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHhchHHHccCC---cceehhchHHHHHHHhhhchHHHHHHHHhhcC
Q 030912 16 RILHFALEGNALKAIELTEELAQDLLEKNK---DLHFDLLSLHFVELVCSRKCTEALEFAQTKLT 77 (169)
Q Consensus 16 ~I~~~I~~G~i~~Ai~~i~~~~p~ll~~~~---~L~F~L~~q~fIElir~~~~~eAi~~ar~~l~ 77 (169)
.-......|+.++|++..++. +..++ ...+.| =.-+.+.|+.++|+.+.++-+.
T Consensus 24 ~a~~~~~~g~~~~A~~~~~~a----l~~~p~~~~~~~~l----g~~~~~~g~~~~A~~~~~~al~ 80 (142)
T 2xcb_A 24 LGFNQYQAGKWDDAQKIFQAL----CMLDHYDARYFLGL----GACRQSLGLYEQALQSYSYGAL 80 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH----HHHCTTCHHHHHHH----HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccHHHHHHHHHHH----HHhCCccHHHHHHH----HHHHHHHhhHHHHHHHHHHHHh
Confidence 345677899999999988652 22222 222222 1123456788888877776544
No 47
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.30 E-value=1.9e+02 Score=22.50 Aligned_cols=87 Identities=18% Similarity=0.137 Sum_probs=46.2
Q ss_pred CCCchhhHHhHHHHHHHHHHHHcCCHHHHHHHHHHhchHHHccC---Ccceehhc------------hHHHHHHH-hhhc
Q 030912 1 MKQPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKN---KDLHFDLL------------SLHFVELV-CSRK 64 (169)
Q Consensus 1 ~~~p~~~~~~~~~R~~I~~~I~~G~i~~Ai~~i~~~~p~ll~~~---~~L~F~L~------------~q~fIEli-r~~~ 64 (169)
|-.|...++ +-+.++..|+.++|++...+. ++.. .+...... ..++.++. ..|+
T Consensus 1 ~s~p~~~l~------~a~~l~~~~~y~eA~~~~~~~----l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~ 70 (434)
T 4b4t_Q 1 MSLPGSKLE------EARRLVNEKQYNEAEQVYLSL----LDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGA 70 (434)
T ss_dssp CCSTTHHHH------HHHHHHHHTCHHHHHHHHHHH----HHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCChHHHHH------HHHHHHHCCCHHHHHHHHHHH----HhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC
Confidence 556666555 456788999999999887552 3321 11111111 12233333 4578
Q ss_pred hHHHHHHHHhhcCCcCC--chhhHHHHHHHHHHhc
Q 030912 65 CTEALEFAQTKLTPFGK--VQKYVEKLEDFMALLA 97 (169)
Q Consensus 65 ~~eAi~~ar~~l~~~~~--~~~~~~el~~~~~LLa 97 (169)
.++|+++-++.+.-+.. .......+...++.+.
T Consensus 71 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 105 (434)
T 4b4t_Q 71 KDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFE 105 (434)
T ss_dssp HHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH
Confidence 88888877755433221 1222334555555543
No 48
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=25.96 E-value=35 Score=18.29 Aligned_cols=11 Identities=18% Similarity=0.163 Sum_probs=9.6
Q ss_pred cCCHHHHHHHH
Q 030912 23 EGNALKAIELT 33 (169)
Q Consensus 23 ~G~i~~Ai~~i 33 (169)
.||++.|++|+
T Consensus 29 ~~n~e~A~~~L 39 (40)
T 1z96_A 29 NGDLDVAASFL 39 (40)
T ss_dssp TTCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 67899999986
No 49
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=25.91 E-value=54 Score=22.51 Aligned_cols=24 Identities=21% Similarity=0.037 Sum_probs=17.9
Q ss_pred HHHHHHHHHH--cCCHHHHHHHHHHh
Q 030912 13 MRKRILHFAL--EGNALKAIELTEEL 36 (169)
Q Consensus 13 ~R~~I~~~I~--~G~i~~Ai~~i~~~ 36 (169)
+|..++.+++ .||++.||+|+-+.
T Consensus 80 d~~~ni~AL~~t~Gdve~AVe~L~~~ 105 (108)
T 2cwb_A 80 DDELSLRALQATGGDIQAALELIFAG 105 (108)
T ss_dssp CHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 3556666665 68999999998654
No 50
>2vqe_T 30S ribosomal protein S20; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.7.6.1 PDB: 1gix_W* 1hnw_T* 1hnx_T* 1hnz_T* 1hr0_T 1j5e_T 1jgo_W* 1jgp_W* 1jgq_W* 1ml5_W* 1yl4_W 2b64_T* 2b9m_T* 2b9o_T* 2f4v_T* 2ow8_u* 2qnh_u* 2uxb_T* 1fjg_T* 2uxd_T* ...
Probab=25.88 E-value=75 Score=21.76 Aligned_cols=29 Identities=21% Similarity=0.318 Sum_probs=21.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhchHHHcc
Q 030912 15 KRILHFALEGNALKAIELTEELAQDLLEK 43 (169)
Q Consensus 15 ~~I~~~I~~G~i~~Ai~~i~~~~p~ll~~ 43 (169)
+.++.+|..||.+.|.+.+..-+|.|-..
T Consensus 38 Kkv~~Ai~~gdk~~A~~~l~~a~s~iDka 66 (106)
T 2vqe_T 38 KKAVQLAQEGKAEEALKIMRKAESLIDKA 66 (106)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 34557788999999988888877766554
No 51
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=25.48 E-value=54 Score=21.83 Aligned_cols=31 Identities=13% Similarity=0.368 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHcCCHHHH-HHHHHHhchHHH
Q 030912 11 MEMRKRILHFALEGNALKA-IELTEELAQDLL 41 (169)
Q Consensus 11 ~~~R~~I~~~I~~G~i~~A-i~~i~~~~p~ll 41 (169)
-+.|..|++.|..|+.+.. ++++-+.|-+..
T Consensus 43 ~dlR~~Vre~l~~G~Sd~eI~~~mv~RYGdfV 74 (90)
T 2kw0_A 43 TDLRQKVYELMQEGKSKKEIVDYMVARYGNFV 74 (90)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhcCCeE
Confidence 4679999999999987665 677777775443
No 52
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=25.41 E-value=43 Score=20.86 Aligned_cols=23 Identities=9% Similarity=-0.034 Sum_probs=16.8
Q ss_pred HHHHHHHHH--cCCHHHHHHHHHHh
Q 030912 14 RKRILHFAL--EGNALKAIELTEEL 36 (169)
Q Consensus 14 R~~I~~~I~--~G~i~~Ai~~i~~~ 36 (169)
+...+.++. .|||+.|++|+=.|
T Consensus 33 ~~qA~kALKat~~NvErAaDWLFSH 57 (63)
T 1wgn_A 33 YECVLRAMKKKGENIEQILDYLFAH 57 (63)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 555666654 57899999999554
No 53
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=24.95 E-value=90 Score=19.02 Aligned_cols=24 Identities=8% Similarity=0.004 Sum_probs=16.3
Q ss_pred HHHHHHHHH--cCCHHHHHHHHHHhc
Q 030912 14 RKRILHFAL--EGNALKAIELTEELA 37 (169)
Q Consensus 14 R~~I~~~I~--~G~i~~Ai~~i~~~~ 37 (169)
|.+.+.+++ .||++.|++|+-.+.
T Consensus 23 ~~~a~~AL~~~~~nve~A~e~L~~~~ 48 (63)
T 1wji_A 23 KEASRQALMDNGNNLEAALNVLLTSN 48 (63)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 344455544 468999999997764
No 54
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=24.94 E-value=64 Score=17.72 Aligned_cols=13 Identities=8% Similarity=-0.049 Sum_probs=10.6
Q ss_pred cCCHHHHHHHHHH
Q 030912 23 EGNALKAIELTEE 35 (169)
Q Consensus 23 ~G~i~~Ai~~i~~ 35 (169)
.||++.|++|+-+
T Consensus 29 ~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 29 NWDLEAATNFLLD 41 (43)
T ss_dssp TSCHHHHHHHHHT
T ss_pred CcCHHHHHHHHHc
Confidence 6789999999844
No 55
>3mzk_B Protein transport protein SEC16; alpha-helical-stack, beta-propeller; 2.69A {Saccharomyces cerevisiae}
Probab=24.76 E-value=53 Score=28.04 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=20.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHh
Q 030912 13 MRKRILHFALEGNALKAIELTEEL 36 (169)
Q Consensus 13 ~R~~I~~~I~~G~i~~Ai~~i~~~ 36 (169)
.-.+|+++|+.|+.++|+++|-+.
T Consensus 153 ~~~~I~~~Ll~G~~e~Av~~al~~ 176 (441)
T 3mzk_B 153 CQMRVLAFLQTGNHDEALRLALSK 176 (441)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhC
Confidence 356899999999999999998654
No 56
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=23.92 E-value=99 Score=25.29 Aligned_cols=40 Identities=15% Similarity=0.154 Sum_probs=34.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHhchHHHccCCcceehhchHHHHHHHhh
Q 030912 16 RILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCS 62 (169)
Q Consensus 16 ~I~~~I~~G~i~~Ai~~i~~~~p~ll~~~~~L~F~L~~q~fIElir~ 62 (169)
..-+++..|+++.|+.++++.. .-+.|.-..+.|+++...
T Consensus 22 laadhvaAGsFe~A~~lLnrQ~-------Givnf~PLk~~F~~~y~~ 61 (320)
T 3mkr_B 22 LPVDHILAGSFETAMRLLHDQV-------GVTQFGPYKQLFLQTYAR 61 (320)
T ss_dssp CHHHHHHTTCHHHHHHHHHHHS-------CBCCCGGGHHHHHHHHTT
T ss_pred cHHHHHHccCHHHHHHHHHHHh-------CccCchhhHHHHHHHHHH
Confidence 5779999999999999999876 568899999999998753
No 57
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=23.35 E-value=55 Score=22.59 Aligned_cols=23 Identities=9% Similarity=-0.175 Sum_probs=16.1
Q ss_pred HHHHHHH---cCCHHHHHHHHHHhch
Q 030912 16 RILHFAL---EGNALKAIELTEELAQ 38 (169)
Q Consensus 16 ~I~~~I~---~G~i~~Ai~~i~~~~p 38 (169)
+.+.+++ +++++.|++|+-+|.+
T Consensus 19 ~a~~AL~~t~n~~~e~A~~wL~~~~~ 44 (126)
T 2lbc_A 19 ACRKAVYFTGNMGAEVAFNWIIVHME 44 (126)
T ss_dssp HHHHHHHHHTSCCHHHHHHHHHHGGG
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHhcc
Confidence 3444444 3469999999988754
No 58
>2x0k_A Riboflavin biosynthesis protein RIBF; riboflavin kinase, nucleotide-binding, transferase, ATP-BIND multifunctional enzyme; 1.95A {Corynebacterium ammoniagenes}
Probab=22.90 E-value=43 Score=27.41 Aligned_cols=23 Identities=17% Similarity=0.105 Sum_probs=19.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhc
Q 030912 15 KRILHFALEGNALKAIELTEELA 37 (169)
Q Consensus 15 ~~I~~~I~~G~i~~Ai~~i~~~~ 37 (169)
..||++|.+|+++.|-+++-..|
T Consensus 165 T~IR~~L~~G~i~~a~~lLGrpy 187 (338)
T 2x0k_A 165 TTVREFLSEGDVARANWALGRHF 187 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHTSCC
T ss_pred chHHHHHhcCcHHHHHHhcceee
Confidence 46999999999999999996654
No 59
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=22.90 E-value=1e+02 Score=22.30 Aligned_cols=34 Identities=15% Similarity=0.102 Sum_probs=26.6
Q ss_pred chhhHHhHHHHH--HHHHHHHcCCHHHHHHHHHHhc
Q 030912 4 PANCLEDMEMRK--RILHFALEGNALKAIELTEELA 37 (169)
Q Consensus 4 p~~~~~~~~~R~--~I~~~I~~G~i~~Ai~~i~~~~ 37 (169)
|....+.++.+. -|.+....||+++|+.-+++..
T Consensus 2 p~~s~ee~~kk~~~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 2 LPLDERAFEKTLTPIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 445556666544 4999999999999999999865
No 60
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=22.33 E-value=1.6e+02 Score=23.66 Aligned_cols=52 Identities=17% Similarity=0.161 Sum_probs=32.4
Q ss_pred HHHcCCHHHHHHHHHHhchHHHccCC-cceehhchHHHHHHHhhhchHHHHHHHHhh
Q 030912 20 FALEGNALKAIELTEELAQDLLEKNK-DLHFDLLSLHFVELVCSRKCTEALEFAQTK 75 (169)
Q Consensus 20 ~I~~G~i~~Ai~~i~~~~p~ll~~~~-~L~F~L~~q~fIElir~~~~~eAi~~ar~~ 75 (169)
....|++++|++|+.+. +..++ .-...++....-=+++.|+.+.|.+..++.
T Consensus 110 ~~~~g~~eeAL~~l~~~----i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 110 QAILGDLDKSLETCVEG----IDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp HHHHTCHHHHHHHHHHH----HTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH----hccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 44579999999999875 33332 123333333333345678888888777643
No 61
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=21.72 E-value=1.4e+02 Score=17.80 Aligned_cols=61 Identities=16% Similarity=0.034 Sum_probs=35.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHhchHHHccCCcceehhchHHHHHHHhhhchHHHHHHHHhhcCCcC
Q 030912 16 RILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFG 80 (169)
Q Consensus 16 ~I~~~I~~G~i~~Ai~~i~~~~p~ll~~~~~L~F~L~~q~fIElir~~~~~eAi~~ar~~l~~~~ 80 (169)
.....+..|+.+.|++.+++. ++.++.-.-......=.-+...|+.++|+++-++-+.-..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~a----l~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEF----LQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHH----HHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCCHHHHHHHHHHH----HHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 445678899999999998763 2222221100111111223456888999988887665443
No 62
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=21.55 E-value=1.7e+02 Score=18.88 Aligned_cols=16 Identities=13% Similarity=0.252 Sum_probs=8.7
Q ss_pred hhchHHHHHHHHhhcC
Q 030912 62 SRKCTEALEFAQTKLT 77 (169)
Q Consensus 62 ~~~~~eAi~~ar~~l~ 77 (169)
.|+.++|+++-++-+.
T Consensus 96 ~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 96 QNDLSLAVQWFHRSLS 111 (127)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHh
Confidence 3456666665555443
No 63
>1k8k_G P16, ARP2/3 complex 16 kDa subunit, P16-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.118.13.1 PDB: 1tyq_G* 1u2v_G* 2p9i_G* 2p9k_G* 2p9l_G 2p9n_G* 2p9p_G* 2p9s_G* 2p9u_G* 3rse_G 3dxm_G* 3dxk_G
Probab=21.50 E-value=50 Score=24.15 Aligned_cols=25 Identities=12% Similarity=0.081 Sum_probs=18.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhch
Q 030912 14 RKRILHFALEGNALKAIELTEELAQ 38 (169)
Q Consensus 14 R~~I~~~I~~G~i~~Ai~~i~~~~p 38 (169)
-.+|+.+|..|+..+|+..+=++-|
T Consensus 39 ~~qv~~lL~~g~~~~ALk~~L~~pP 63 (151)
T 1k8k_G 39 EGEVDSCLRQGNMTAALQAALKNPP 63 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTSSCC
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 4678888888888888888755433
No 64
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=21.16 E-value=1.5e+02 Score=19.98 Aligned_cols=50 Identities=8% Similarity=-0.247 Sum_probs=23.2
Q ss_pred HHHcCCHHHHHH---HHHHhchHHHccCCcceehhchHHHHHHHhhhchHHHHHHHHhhcC
Q 030912 20 FALEGNALKAIE---LTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLT 77 (169)
Q Consensus 20 ~I~~G~i~~Ai~---~i~~~~p~ll~~~~~L~F~L~~q~fIElir~~~~~eAi~~ar~~l~ 77 (169)
++..|+++.|.+ ++.. ++..........=.-....|+.++|+.+.++-+.
T Consensus 2 ~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 54 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA--------HPATASGARFMLGYVYAFMDRFDEARASFQALQQ 54 (203)
T ss_dssp -----CHHHHHHHHHHHHT--------STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHhcC--------ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 467889999988 5533 1211122222222223345777777777665554
No 65
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=20.97 E-value=1.1e+02 Score=25.13 Aligned_cols=41 Identities=12% Similarity=0.067 Sum_probs=34.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhchHHHccCCcceehhchHHHHHHHhh
Q 030912 15 KRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCS 62 (169)
Q Consensus 15 ~~I~~~I~~G~i~~Ai~~i~~~~p~ll~~~~~L~F~L~~q~fIElir~ 62 (169)
...-+++..|+++.|+.++++.. .-+.|.-..+.|+++...
T Consensus 33 ~laadhvAAGsFetAm~lLnrQv-------Givnf~PLk~~F~~~y~~ 73 (325)
T 3mv2_A 33 KLPAVLVAAGAFDAAVQALSKQV-------GVVKLEPLKKYFTNIYEG 73 (325)
T ss_dssp CSHHHHHHTTCHHHHHHHHHHHH-------CBCCCGGGHHHHHHHHHH
T ss_pred CcHHHHHHccCHHHHHHHHHHHh-------CccCchhhHHHHHHHHHH
Confidence 34678999999999999999866 567899999999998653
No 66
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=20.72 E-value=56 Score=19.70 Aligned_cols=14 Identities=21% Similarity=0.378 Sum_probs=11.1
Q ss_pred cCC--HHHHHHHHHHh
Q 030912 23 EGN--ALKAIELTEEL 36 (169)
Q Consensus 23 ~G~--i~~Ai~~i~~~ 36 (169)
.|+ +++|++|+.+.
T Consensus 33 Tg~~Gle~AmewL~k~ 48 (54)
T 2cos_A 33 TGSRSIEAALEYISKM 48 (54)
T ss_dssp HTSCCHHHHHHHHHHH
T ss_pred hCcccHHHHHHHHHHh
Confidence 455 99999999764
No 67
>1z7l_A Ubiquitin-activating enzyme E1 1; SCCH, second catalytic cysteine half-domain, ligase; HET: TBR; 2.80A {Mus musculus}
Probab=20.15 E-value=1.7e+02 Score=23.12 Aligned_cols=21 Identities=5% Similarity=0.143 Sum_probs=18.0
Q ss_pred CHHHHHHHHHHhchHHHccCC
Q 030912 25 NALKAIELTEELAQDLLEKNK 45 (169)
Q Consensus 25 ~i~~Ai~~i~~~~p~ll~~~~ 45 (169)
.++-+|.|+.+.|.++|...+
T Consensus 25 ~i~HcI~WAr~lFe~lF~~~~ 45 (276)
T 1z7l_A 25 AIEHTLQWARDEFEGLFKQPA 45 (276)
T ss_dssp SHHHHHHHHHHHHHHHHTHHH
T ss_pred ChhHHHHHHHHHHHHHHcCCH
Confidence 578899999999999998743
Done!