BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030913
(169 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6GEE3|UREE_STAAR Urease accessory protein UreE OS=Staphylococcus aureus (strain
MRSA252) GN=ureE PE=3 SV=1
Length = 150
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 109 ATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSALFPR 154
TE+G RL + L YG +L AD+ N +I +D S DL + PR
Sbjct: 44 GTEIGIRLKQPIDLQYGDILYADDHN---MIVVDVNSEDLLVIQPR 86
>sp|Q7A065|UREE_STAAW Urease accessory protein UreE OS=Staphylococcus aureus (strain MW2)
GN=ureE PE=3 SV=1
Length = 150
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 109 ATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSALFPR 154
TE+G RL + L YG +L AD+ N +I +D S DL + PR
Sbjct: 44 GTEIGIRLKQPIDLQYGDILYADDHN---MIIVDVNSEDLLVIQPR 86
>sp|A8Z388|UREE_STAAT Urease accessory protein UreE OS=Staphylococcus aureus (strain
USA300 / TCH1516) GN=ureE PE=3 SV=1
Length = 150
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 109 ATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSALFPR 154
TE+G RL + L YG +L AD+ N +I +D S DL + PR
Sbjct: 44 GTEIGIRLKQPIDLQYGDILYADDHN---MIIVDVNSEDLLVIQPR 86
>sp|Q6G731|UREE_STAAS Urease accessory protein UreE OS=Staphylococcus aureus (strain
MSSA476) GN=ureE PE=3 SV=1
Length = 150
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 109 ATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSALFPR 154
TE+G RL + L YG +L AD+ N +I +D S DL + PR
Sbjct: 44 GTEIGIRLKQPIDLQYGDILYADDHN---MIIVDVNSEDLLVIQPR 86
>sp|Q7A429|UREE_STAAN Urease accessory protein UreE OS=Staphylococcus aureus (strain
N315) GN=ureE PE=1 SV=1
Length = 150
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 109 ATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSALFPR 154
TE+G RL + L YG +L AD+ N +I +D S DL + PR
Sbjct: 44 GTEIGIRLKQPIDLQYGDILYADDHN---MIIVDVNSEDLLVIQPR 86
>sp|Q99RY1|UREE_STAAM Urease accessory protein UreE OS=Staphylococcus aureus (strain Mu50
/ ATCC 700699) GN=ureE PE=3 SV=1
Length = 150
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 109 ATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSALFPR 154
TE+G RL + L YG +L AD+ N +I +D S DL + PR
Sbjct: 44 GTEIGIRLKQPIDLQYGDILYADDHN---MIIVDVNSEDLLVIQPR 86
>sp|A6QJD1|UREE_STAAE Urease accessory protein UreE OS=Staphylococcus aureus (strain
Newman) GN=ureE PE=3 SV=1
Length = 150
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 109 ATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSALFPR 154
TE+G RL + L YG +L AD+ N +I +D S DL + PR
Sbjct: 44 GTEIGIRLKQPIDLQYGDILYADDHN---MIIVDVNSEDLLVIQPR 86
>sp|Q5HDR7|UREE_STAAC Urease accessory protein UreE OS=Staphylococcus aureus (strain COL)
GN=ureE PE=3 SV=1
Length = 150
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 109 ATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSALFPR 154
TE+G RL + L YG +L AD+ N +I +D S DL + PR
Sbjct: 44 GTEIGIRLKQPIDLQYGDILYADDHN---MIIVDVNSEDLLVIQPR 86
>sp|Q2YYQ5|UREE_STAAB Urease accessory protein UreE OS=Staphylococcus aureus (strain
bovine RF122 / ET3-1) GN=ureE PE=3 SV=1
Length = 150
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 109 ATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSALFPR 154
TE+G RL + L YG +L AD+ N +I +D S DL + PR
Sbjct: 44 GTEIGIRLKQPIDLQYGDILYADDHN---MIIVDVNSEDLLVIQPR 86
>sp|A5IV72|UREE_STAA9 Urease accessory protein UreE OS=Staphylococcus aureus (strain JH9)
GN=ureE PE=3 SV=1
Length = 150
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 109 ATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSALFPR 154
TE+G RL + L YG +L AD+ N +I +D S DL + PR
Sbjct: 44 GTEIGIRLKQPIDLQYGDILYADDHN---MIIVDVNSEDLLVIQPR 86
>sp|Q2G2K8|UREE_STAA8 Urease accessory protein UreE OS=Staphylococcus aureus (strain NCTC
8325) GN=ureE PE=3 SV=1
Length = 150
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 109 ATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSALFPR 154
TE+G RL + L YG +L AD+ N +I +D S DL + PR
Sbjct: 44 GTEIGIRLKQPIDLQYGDILYADDHN---MIIVDVNSEDLLVIQPR 86
>sp|Q2FEK2|UREE_STAA3 Urease accessory protein UreE OS=Staphylococcus aureus (strain
USA300) GN=ureE PE=3 SV=1
Length = 150
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 109 ATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSALFPR 154
TE+G RL + L YG +L AD+ N +I +D S DL + PR
Sbjct: 44 GTEIGIRLKQPIDLQYGDILYADDHN---MIIVDVNSEDLLVIQPR 86
>sp|A6U415|UREE_STAA2 Urease accessory protein UreE OS=Staphylococcus aureus (strain JH1)
GN=ureE PE=3 SV=1
Length = 150
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 109 ATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSALFPR 154
TE+G RL + L YG +L AD+ N +I +D S DL + PR
Sbjct: 44 GTEIGIRLKQPIDLQYGDILYADDHN---MIIVDVNSEDLLVIQPR 86
>sp|A7X5M4|UREE_STAA1 Urease accessory protein UreE OS=Staphylococcus aureus (strain Mu3
/ ATCC 700698) GN=ureE PE=3 SV=1
Length = 150
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 109 ATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSALFPR 154
TE+G RL + L YG +L AD+ N +I +D S DL + PR
Sbjct: 44 GTEIGIRLKQPIDLQYGDILYADDHN---MIIVDVNSEDLLVIQPR 86
>sp|B8DGL7|Y2435_LISMH UPF0145 protein LMHCC_2435 OS=Listeria monocytogenes serotype 4a
(strain HCC23) GN=LMHCC_2435 PE=3 SV=1
Length = 110
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 74 IGAGEKTNDDKGKAVAHDLEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNS 133
IGAG + N G++ ++ E INA I +M Q A ++G+ + V + Y +VL ADN
Sbjct: 35 IGAGLR-NFFGGRSQGYEDELINAREEAIREMEQRAKDIGANAVIGVDIDY-EVLGADNG 92
Query: 134 NLSVLIS 140
L V S
Sbjct: 93 MLMVTAS 99
>sp|P0A4Q9|Y240_LISIN UPF0145 protein lin0240 OS=Listeria innocua serovar 6a (strain CLIP
11262) GN=lin0240 PE=3 SV=1
Length = 110
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 74 IGAGEKTNDDKGKAVAHDLEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNS 133
IGAG + N G++ ++ E INA I +M Q A ++G+ + V + Y +VL ADN
Sbjct: 35 IGAGLR-NFFGGRSQGYEDELINAREEAIREMEQRAKDIGANAVIGVDIDY-EVLGADNG 92
Query: 134 NLSVLIS 140
L V S
Sbjct: 93 MLMVTAS 99
>sp|Q724K5|Y219_LISMF UPF0145 protein LMOf2365_0219 OS=Listeria monocytogenes serotype 4b
(strain F2365) GN=LMOf2365_0219 PE=3 SV=1
Length = 110
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 74 IGAGEKTNDDKGKAVAHDLEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNS 133
IGAG + N G++ ++ E INA I +M Q A ++G+ + V + Y +VL ADN
Sbjct: 35 IGAGLR-NFFGGRSQGYEDELINAREEAIREMEQRAKDIGANAVIGVDIDY-EVLGADNG 92
Query: 134 NLSVLIS 140
L V S
Sbjct: 93 MLMVTAS 99
>sp|P0A4Q8|Y208_LISMO UPF0145 protein lmo0208 OS=Listeria monocytogenes serovar 1/2a
(strain ATCC BAA-679 / EGD-e) GN=lmo0208 PE=3 SV=1
Length = 110
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 74 IGAGEKTNDDKGKAVAHDLEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNS 133
IGAG + N G++ ++ E INA I +M Q A ++G+ + V + Y +VL ADN
Sbjct: 35 IGAGLR-NFFGGRSQGYEDELINAREEAIREMEQRAKDIGANAVIGVDIDY-EVLGADNG 92
Query: 134 NLSVLIS 140
L V S
Sbjct: 93 MLMVTAS 99
>sp|C1KYE1|Y206_LISMC UPF0145 protein Lm4b_00206 OS=Listeria monocytogenes serotype 4b
(strain CLIP80459) GN=Lm4b_00206 PE=3 SV=1
Length = 110
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 74 IGAGEKTNDDKGKAVAHDLEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNS 133
IGAG + N G++ ++ E INA I +M Q A ++G+ + V + Y +VL ADN
Sbjct: 35 IGAGLR-NFFGGRSQGYEDELINAREEAIREMEQRAKDIGANAVIGVDIDY-EVLGADNG 92
Query: 134 NLSVLIS 140
L V S
Sbjct: 93 MLMVTAS 99
>sp|Q8VMY3|Y208_LISIV UPF0145 protein OS=Listeria ivanovii PE=3 SV=1
Length = 110
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 74 IGAGEKTNDDKGKAVAHDLEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNS 133
IGAG + N G++ ++ E INA I +M Q A ++G+ + V + Y +VL ADN
Sbjct: 35 IGAGLR-NFFGGRSQGYEDELINAREEAIKEMEQRAKDIGANAVIGVDIDY-EVLGADNG 92
Query: 134 NLSVLIS 140
L V S
Sbjct: 93 MLMVTAS 99
>sp|Q8CNC8|UREE_STAES Urease accessory protein UreE OS=Staphylococcus epidermidis (strain
ATCC 12228) GN=ureE PE=3 SV=1
Length = 150
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 109 ATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSALFPR 154
E+G RL + L YG +L D++N +I +D S DL + PR
Sbjct: 44 GNEIGIRLKQPIDLQYGDILYQDDTN---MIIVDVNSEDLLVIKPR 86
>sp|Q5HLW0|UREE_STAEQ Urease accessory protein UreE OS=Staphylococcus epidermidis (strain
ATCC 35984 / RP62A) GN=ureE PE=3 SV=1
Length = 150
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 109 ATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSALFPR 154
E+G RL + L YG +L D++N +I +D S DL + PR
Sbjct: 44 GNEIGIRLKQPIDLQYGDILYQDDTN---MIIVDVNSEDLLVIKPR 86
>sp|Q8VMW4|Y194_LISSS UPF0145 protein lse_0194 OS=Listeria seeligeri serovar 1/2b (strain
ATCC 35967 / DSM 20751 / CIP 100100 / SLCC 3954) GN=vclB
PE=3 SV=1
Length = 110
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 74 IGAGEKTNDDKGKAVAHDLEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNS 133
IGAG + N G++ ++ E INA I +M Q A ++G+ + V + Y +VL ADN
Sbjct: 35 IGAGLR-NFFGGRSQGYEDELINAREEAIKEMEQRAQDIGANAVIGVDIDY-EVLGADNG 92
Query: 134 NLSVLIS 140
L V S
Sbjct: 93 MLMVTAS 99
>sp|Q4A0J6|UREE_STAS1 Urease accessory protein UreE OS=Staphylococcus saprophyticus
subsp. saprophyticus (strain ATCC 15305 / DSM 20229)
GN=ureE PE=3 SV=1
Length = 150
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 109 ATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSALFPR 154
E+G RL + L YG +L D+ N +I +D S DL + PR
Sbjct: 44 GNEIGIRLKQPIDLQYGDILYKDDKN---MIVVDVNSEDLLVIKPR 86
>sp|O51053|QUEA_BORBU S-adenosylmethionine:tRNA ribosyltransferase-isomerase OS=Borrelia
burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM
4680) GN=queA PE=3 SV=2
Length = 343
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 66 QFDLVLVHIGAGEKTNDDKGKAVAHDLEYINALVRVILQMA-QPATEVGSRLHLSVVLSY 124
++D + +H+GAG K H++ + L++ + + Q A +G R+ LS+V +
Sbjct: 194 EYDFITLHVGAGTFLPVRSKKVEEHNMHFETFLIKDFVAVRLQNAKLLGKRI-LSIVTTT 252
Query: 125 GQVLEADNSNLSVLISIDEKSSDLSALFPRQSYTMK 160
+ LE+ N ++S++L ++P ++Y K
Sbjct: 253 LRALESSYDNNLKKFKTGQQSTNL-FIYPGKNYCFK 287
>sp|A9KHK4|GLRP_CLOPH D-galactosyl-beta-1->4-L-rhamnose phosphorylase OS=Clostridium
phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg)
GN=Cphy_1920 PE=1 SV=1
Length = 722
Score = 31.6 bits (70), Expect = 2.6, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 11/106 (10%)
Query: 1 MGLKAALITTNS--RLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQR 58
M LK + +S L+S+ F +++LI ++SLSG P DV + + + +
Sbjct: 447 MALKPRIAVLHSWGSLRSWTLSGHFHETYMHDLIHINESLSGLPFDV---KFINFEDINQ 503
Query: 59 GKMEEVSQFDLVLVHIGAGEKTNDDKGKAVAHDLEYINALVRVILQ 104
G +EEV V I AG + G D E I L R + +
Sbjct: 504 GALEEVD------VVINAGIMGSAWTGGQAWEDQEIIERLTRFVYE 543
>sp|P52686|SDSB_PSES9 SDS degradation transcriptional activation protein OS=Pseudomonas
sp. (strain ATCC 19151) GN=sdsB PE=4 SV=1
Length = 306
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 14 LKSFGDKLGFAT---LQLNELIETSDSLSGSPIDVVASEL----LKLLGLQRGKMEEVSQ 66
L G LG + L L+ SD LS +P+DVVA E+ L LL L G + + S
Sbjct: 212 LAESGQPLGIECDNFMALKALVAESDVLSMAPLDVVAEEIEAGRLALLELAPGLLSQRSA 271
Query: 67 FDLV 70
+ LV
Sbjct: 272 YGLV 275
>sp|B9DLY1|UREE_STACT Urease accessory protein UreE OS=Staphylococcus carnosus (strain
TM300) GN=ureE PE=3 SV=1
Length = 150
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 109 ATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKSSDLSALFPR 154
E+G RL V L YG +L D+ N +I +D S D+ + PR
Sbjct: 44 GNEIGIRLKNPVDLEYGDILYQDDHN---MIVVDVNSEDILVIQPR 86
>sp|Q8VL64|Y208_LISWE UPF0145 protein OS=Listeria welshimeri PE=3 SV=1
Length = 110
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 74 IGAGEKTNDDKGKAVAHDLEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNS 133
IGAG + N G++ ++ E INA I +M A ++G+ + V + Y +VL ADN
Sbjct: 35 IGAGLR-NFFGGRSQGYEDELINAREEAIREMESRAKDIGANAVIGVDIDY-EVLGADNG 92
Query: 134 NLSVLIS 140
L V S
Sbjct: 93 MLMVTAS 99
>sp|A0AF06|Y170_LISW6 UPF0145 protein lwe0170 OS=Listeria welshimeri serovar 6b (strain
ATCC 35897 / DSM 20650 / SLCC5334) GN=lwe0170 PE=3 SV=1
Length = 110
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 74 IGAGEKTNDDKGKAVAHDLEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNS 133
IGAG + N G++ ++ E INA I +M A ++G+ + V + Y +VL ADN
Sbjct: 35 IGAGLR-NFFGGRSQGYEDELINAREEAIREMESRAKDIGANAVIGVDIDY-EVLGADNG 92
Query: 134 NLSVLIS 140
L V S
Sbjct: 93 MLMVTAS 99
>sp|Q899S2|MNME_CLOTE tRNA modification GTPase MnmE OS=Clostridium tetani (strain
Massachusetts / E88) GN=mnmE PE=3 SV=1
Length = 459
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 45/78 (57%), Gaps = 10/78 (12%)
Query: 30 ELIETSDSLSGSPIDVV-------ASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTND 82
++IE +L G PI ++ +L++ +G++R K E++++ DLV++ + + K ND
Sbjct: 260 DVIEEYINLDGIPIKIIDTAGIRETEDLVEKIGVERSK-EKINEADLVILVLDSSNKLND 318
Query: 83 DKGKAVAH--DLEYINAL 98
+ + + + D +YI L
Sbjct: 319 EDYEIIEYIKDKKYITLL 336
>sp|O02373|UGDH_DROME UDP-glucose 6-dehydrogenase OS=Drosophila melanogaster GN=sgl PE=1
SV=1
Length = 476
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 64 VSQFDLVLVHIGAGEKTNDDKGKAVAHDLEYINALVRVILQMAQ 107
+ + DL+ + + KT + GK A DL+Y+ + R+I ++AQ
Sbjct: 75 IKEADLIFISVNTPTKTCGN-GKGRAADLKYVESAARMIAEIAQ 117
>sp|Q55GS3|DICB_DICDI Discoidin-inducing complex subunit B OS=Dictyostelium discoideum
GN=dicB PE=1 SV=1
Length = 607
Score = 29.6 bits (65), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 82 DDKGKAVAHDLEYINALVRVILQMAQPATEVGSRLHL-SVVLSYGQVLEADNSNLSVLIS 140
+D+ K VA D + + V L SRL+L S+V + + +NS LS+L S
Sbjct: 226 NDQSKIVAIDADNVKISGVVTLNDQSSIQLTSSRLYLDSLVTATTSSILVNNSTLSILQS 285
Query: 141 IDEKSSDLSALFPRQSYTMK 160
I S SA+F +T+K
Sbjct: 286 IPTTFSPASAVFKGSVFTIK 305
>sp|P41882|YPT4_CAEEL Ankyrin repeat-containing protein F37A4.4 OS=Caenorhabditis elegans
GN=F37A4.4 PE=4 SV=2
Length = 1163
Score = 29.6 bits (65), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 65 SQFDLVLVHIGAGEKTNDDKGKAVAHDLEYINALVRVILQMAQPATEVGSRLHLSVVLSY 124
S F + V GAGEK + + + + +L + L RV +A A + + + V++
Sbjct: 9 STFVVFFVASGAGEKQGESQLQQIYDEL---SILSRVTNAIALQAAALSKTVKIREVIT- 64
Query: 125 GQVLEADNSNLSVLISID 142
++L+ DN N S L+S+D
Sbjct: 65 -ELLKVDNGNFSNLLSLD 81
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.132 0.347
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,253,077
Number of Sequences: 539616
Number of extensions: 2155734
Number of successful extensions: 4657
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 4643
Number of HSP's gapped (non-prelim): 43
length of query: 169
length of database: 191,569,459
effective HSP length: 109
effective length of query: 60
effective length of database: 132,751,315
effective search space: 7965078900
effective search space used: 7965078900
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)