Query 030913
Match_columns 169
No_of_seqs 39 out of 41
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 06:28:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030913.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030913hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3635 Predicted phosphoglyce 99.9 8.4E-25 1.8E-29 196.9 7.2 89 2-104 246-335 (408)
2 PRK04024 cofactor-independent 99.8 2.2E-18 4.8E-23 155.2 8.8 92 2-107 243-335 (412)
3 PRK04135 cofactor-independent 99.7 7.6E-18 1.6E-22 151.9 8.0 82 2-104 236-318 (395)
4 PRK04200 cofactor-independent 99.7 1.8E-17 4E-22 148.3 6.9 91 2-106 233-325 (395)
5 TIGR02535 hyp_Hser_kinase prop 99.7 4.9E-17 1.1E-21 145.6 8.1 92 2-107 234-327 (396)
6 TIGR00306 apgM 2,3-bisphosphog 99.7 4E-17 8.7E-22 146.3 7.0 92 2-107 237-329 (396)
7 PF01676 Metalloenzyme: Metall 99.3 7.5E-13 1.6E-17 110.6 3.8 113 2-132 85-202 (252)
8 PRK12383 putative mutase; Prov 98.6 1.3E-07 2.8E-12 86.2 6.9 86 24-126 255-341 (406)
9 PRK05434 phosphoglyceromutase; 97.9 2E-05 4.3E-10 73.7 5.6 60 41-108 370-430 (507)
10 PLN02538 2,3-bisphosphoglycera 97.8 2.8E-05 6E-10 73.8 5.8 80 34-127 396-477 (558)
11 TIGR01696 deoB phosphopentomut 97.6 0.00012 2.6E-09 66.6 6.3 86 13-109 218-314 (381)
12 PRK05362 phosphopentomutase; P 97.3 0.00063 1.4E-08 62.1 7.0 59 42-108 260-321 (394)
13 TIGR01307 pgm_bpd_ind 2,3-bisp 97.1 0.00093 2E-08 62.8 6.0 68 33-108 356-424 (501)
14 cd00016 alkPPc Alkaline phosph 94.9 0.043 9.3E-07 49.6 4.9 59 40-107 230-291 (384)
15 COG0696 GpmI Phosphoglyceromut 88.6 1 2.2E-05 43.1 5.8 88 32-132 362-450 (509)
16 KOG4513 Phosphoglycerate mutas 88.3 0.9 2E-05 43.0 5.2 78 42-132 388-466 (531)
17 PF01663 Phosphodiest: Type I 83.0 1.6 3.4E-05 36.3 3.7 66 63-129 180-248 (365)
18 COG1015 DeoB Phosphopentomutas 69.0 10 0.00023 35.4 5.3 76 24-110 248-326 (397)
19 PF00448 SRP54: SRP54-type pro 66.0 20 0.00044 29.2 5.9 102 10-145 44-154 (196)
20 COG1436 NtpG Archaeal/vacuolar 61.0 34 0.00073 26.2 5.9 68 1-103 1-68 (104)
21 cd00758 MoCF_BD MoCF_BD: molyb 57.9 16 0.00035 27.7 3.7 76 9-111 19-100 (133)
22 KOG0638 4-hydroxyphenylpyruvat 56.7 36 0.00079 31.7 6.4 97 12-129 30-143 (381)
23 TIGR03584 PseF pseudaminic aci 56.4 64 0.0014 26.6 7.3 77 6-104 44-122 (222)
24 smart00098 alkPPc Alkaline pho 53.9 25 0.00055 32.7 5.0 78 40-124 233-316 (419)
25 PF00994 MoCF_biosynth: Probab 51.4 16 0.00034 27.8 2.8 48 9-74 17-64 (144)
26 cd01475 vWA_Matrilin VWA_Matri 51.0 26 0.00057 28.4 4.2 78 66-156 2-79 (224)
27 PF10137 TIR-like: Predicted n 49.7 65 0.0014 25.2 6.0 100 14-154 16-117 (125)
28 PRK01395 V-type ATP synthase s 47.3 48 0.001 25.0 4.8 53 1-75 2-54 (104)
29 PRK13011 formyltetrahydrofolat 44.1 53 0.0012 28.7 5.3 25 5-29 120-144 (286)
30 PRK12723 flagellar biosynthesi 42.8 2.1E+02 0.0045 26.3 9.0 106 2-145 206-326 (388)
31 TIGR00177 molyb_syn molybdenum 42.4 39 0.00085 26.0 3.7 47 9-73 27-73 (144)
32 TIGR00655 PurU formyltetrahydr 42.3 56 0.0012 28.6 5.1 26 5-30 115-140 (280)
33 smart00852 MoCF_biosynth Proba 41.9 41 0.00088 25.2 3.7 50 9-77 18-67 (135)
34 cd00886 MogA_MoaB MogA_MoaB fa 41.6 38 0.00082 26.3 3.6 51 10-77 21-71 (152)
35 PRK14974 cell division protein 41.1 1.7E+02 0.0036 26.4 8.0 79 2-108 168-253 (336)
36 PF00702 Hydrolase: haloacid d 40.6 40 0.00087 25.7 3.6 52 1-59 142-196 (215)
37 KOG2125 Glycosylphosphatidylin 39.9 17 0.00038 36.5 1.7 101 63-168 188-294 (760)
38 PF02938 GAD: GAD domain; Int 37.1 73 0.0016 23.1 4.3 47 22-77 42-88 (95)
39 PRK03957 V-type ATP synthase s 36.8 84 0.0018 23.3 4.6 52 3-75 1-53 (100)
40 PRK06027 purU formyltetrahydro 36.1 94 0.002 27.1 5.5 53 5-73 120-172 (286)
41 cd00229 SGNH_hydrolase SGNH_hy 35.8 65 0.0014 22.5 3.7 41 63-104 62-102 (187)
42 PF01990 ATP-synt_F: ATP synth 35.5 70 0.0015 23.0 3.9 50 6-75 2-51 (95)
43 cd00885 cinA Competence-damage 34.6 53 0.0011 26.4 3.5 50 9-77 19-68 (170)
44 cd01835 SGNH_hydrolase_like_3 32.9 1E+02 0.0022 23.7 4.7 44 65-109 68-111 (193)
45 COG1419 FlhF Flagellar GTP-bin 32.7 69 0.0015 30.1 4.3 96 10-146 248-353 (407)
46 COG1861 SpsF Spore coat polysa 32.3 1.8E+02 0.004 25.7 6.6 62 13-105 59-120 (241)
47 COG1608 Predicted archaeal kin 32.3 2.2E+02 0.0048 25.4 7.2 63 90-153 77-162 (252)
48 cd01834 SGNH_hydrolase_like_2 32.2 65 0.0014 24.0 3.5 40 65-104 60-100 (191)
49 cd01145 TroA_c Periplasmic bin 31.7 67 0.0014 26.0 3.7 55 6-73 4-58 (203)
50 PRK01189 V-type ATP synthase s 31.5 1.3E+02 0.0029 22.7 5.0 57 1-79 1-58 (104)
51 cd01137 PsaA Metal binding pro 31.1 62 0.0013 27.8 3.6 55 6-73 19-73 (287)
52 PLN02917 CMP-KDO synthetase 30.7 2.4E+02 0.0051 24.5 7.1 92 7-128 93-188 (293)
53 cd01838 Isoamyl_acetate_hydrol 30.4 1.1E+02 0.0024 22.9 4.5 17 66-82 63-79 (199)
54 PRK10518 alkaline phosphatase; 30.2 90 0.002 29.8 4.7 62 40-108 323-385 (476)
55 cd01017 AdcA Metal binding pro 29.8 67 0.0014 27.2 3.5 55 6-73 5-59 (282)
56 PRK03673 hypothetical protein; 29.1 60 0.0013 29.9 3.3 49 9-75 21-69 (396)
57 cd00887 MoeA MoeA family. Memb 29.0 75 0.0016 28.6 3.9 47 9-73 195-241 (394)
58 COG1785 PhoA Alkaline phosphat 28.6 99 0.0021 29.8 4.7 61 40-109 279-342 (482)
59 PRK02228 V-type ATP synthase s 27.7 1.8E+02 0.0039 21.5 5.1 53 3-75 1-53 (100)
60 PRK09417 mogA molybdenum cofac 27.5 1.5E+02 0.0033 24.6 5.2 60 3-78 4-77 (193)
61 PLN02331 phosphoribosylglycina 27.2 1.6E+02 0.0035 24.7 5.3 27 5-31 30-58 (207)
62 PF00356 LacI: Bacterial regul 27.2 23 0.00051 23.1 0.2 44 14-58 2-45 (46)
63 TIGR02667 moaB_proteo molybden 26.7 98 0.0021 24.6 3.8 52 10-78 23-74 (163)
64 cd01016 TroA Metal binding pro 26.3 88 0.0019 26.6 3.6 55 6-73 3-57 (276)
65 COG1212 KdsB CMP-2-keto-3-deox 26.2 4.1E+02 0.0088 23.7 7.7 74 6-105 47-120 (247)
66 PF03710 GlnE: Glutamate-ammon 26.2 96 0.0021 26.2 3.8 35 65-105 145-180 (247)
67 cd01018 ZntC Metal binding pro 25.7 85 0.0019 26.4 3.4 55 6-73 4-58 (266)
68 TIGR02009 PGMB-YQAB-SF beta-ph 25.6 78 0.0017 23.9 2.9 56 2-58 104-159 (185)
69 TIGR02764 spore_ybaN_pdaB poly 25.5 3.3E+02 0.0071 21.3 6.6 72 11-105 109-180 (191)
70 PRK13010 purU formyltetrahydro 25.1 1.9E+02 0.004 25.5 5.5 26 5-30 124-149 (289)
71 PF01596 Methyltransf_3: O-met 24.5 69 0.0015 26.6 2.6 52 42-110 81-149 (205)
72 TIGR02335 hydr_PhnA phosphonoa 24.3 1.2E+02 0.0026 27.8 4.3 64 47-129 177-243 (408)
73 PF09457 RBD-FIP: FIP domain ; 24.1 50 0.0011 22.3 1.4 16 92-107 27-42 (48)
74 KOG0480 DNA replication licens 24.0 86 0.0019 31.8 3.5 27 65-105 517-544 (764)
75 TIGR00200 cinA_nterm competenc 23.7 97 0.0021 28.7 3.6 49 9-76 20-68 (413)
76 TIGR02884 spore_pdaA delta-lac 23.5 4.2E+02 0.009 21.8 7.1 73 11-105 141-213 (224)
77 COG1058 CinA Predicted nucleot 23.3 1.1E+02 0.0025 26.8 3.8 48 9-74 21-68 (255)
78 PRK09545 znuA high-affinity zi 23.2 1E+02 0.0022 26.9 3.5 55 6-73 26-80 (311)
79 PLN02828 formyltetrahydrofolat 22.7 1.6E+02 0.0035 25.9 4.7 49 5-73 101-154 (268)
80 cd01821 Rhamnogalacturan_acety 22.4 2.3E+02 0.005 21.9 5.1 37 65-103 64-104 (198)
81 PF04086 SRP-alpha_N: Signal r 22.0 1.3E+02 0.0027 25.5 3.8 30 64-105 34-64 (279)
82 PRK01215 competence damage-ind 22.0 1.2E+02 0.0025 26.3 3.6 50 9-77 23-72 (264)
83 PF01297 TroA: Periplasmic sol 21.6 1E+02 0.0022 25.4 3.0 54 7-74 1-55 (256)
84 COG1936 Predicted nucleotide k 21.4 1.8E+02 0.0039 24.7 4.5 72 6-78 3-94 (180)
85 TIGR00638 Mop molybdenum-pteri 20.8 1.1E+02 0.0024 19.9 2.6 26 45-78 38-63 (69)
86 PF12682 Flavodoxin_4: Flavodo 20.3 1.1E+02 0.0023 24.3 2.8 59 14-74 17-81 (156)
87 PRK14690 molybdopterin biosynt 20.1 1.2E+02 0.0027 28.0 3.5 47 9-73 220-266 (419)
No 1
>COG3635 Predicted phosphoglycerate mutase, AP superfamily [Carbohydrate transport and metabolism]
Probab=99.91 E-value=8.4e-25 Score=196.90 Aligned_cols=89 Identities=22% Similarity=0.333 Sum_probs=88.1
Q ss_pred CCceeEeecCchhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEeccCCCcC
Q 030913 2 GLKAALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTN 81 (169)
Q Consensus 2 GmKAA~Vt~~~liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d~a~ 81 (169)
|||||||+.++++||+|+.+||+|++++++||+.+| +|++++++|+++| ++|||||||||++|+++
T Consensus 246 glk~a~Ia~~~l~KGlar~~GmDvi~vegatG~~dt----n~~~k~k~a~eal----------~~yDfv~vhik~tDeag 311 (408)
T COG3635 246 GLKGACIAAVPLIKGLARLVGMDVIEVEGATGYIDT----NYRGKAKAAIEAL----------KEYDFVFVHIKATDEAG 311 (408)
T ss_pred CcceEEEEecHHHHhHHHHhCCceeecccccCccCc----cHHHHHHHHHHHH----------hhCCEEEEEeccCcccc
Confidence 899999999999999999999999999999999999 9999999999999 99999999999999999
Q ss_pred cCCCcccccC-hHHHHHHHHHHHH
Q 030913 82 DDKGKAVAHD-LEYINALVRVILQ 104 (169)
Q Consensus 82 hdG~~~~k~d-iE~iD~lVg~im~ 104 (169)
|||+++.|+. ||+||++++++++
T Consensus 312 HdG~~e~Kv~~IE~iD~~i~pll~ 335 (408)
T COG3635 312 HDGDFEGKVRVIEDIDKAIGPLLD 335 (408)
T ss_pred CCCCHHHhHHHHHHHHHHhhhhhc
Confidence 9999999999 9999999999997
No 2
>PRK04024 cofactor-independent phosphoglycerate mutase; Provisional
Probab=99.75 E-value=2.2e-18 Score=155.18 Aligned_cols=92 Identities=22% Similarity=0.351 Sum_probs=89.7
Q ss_pred CCceeEeecCchhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEeccCCCcC
Q 030913 2 GLKAALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTN 81 (169)
Q Consensus 2 GmKAA~Vt~~~liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d~a~ 81 (169)
|||+|+|+++++++|+|+.+||+|+.++++||..++ ++.+++++++++| ++|||||+|++++|.++
T Consensus 243 gl~ga~is~~~l~kGLa~~~Gm~~~~vpg~tg~~~t----~~~~k~~~~~~~l----------~~~Dfv~vh~~~~D~~G 308 (412)
T PRK04024 243 GLKAACVAGTALIKGIARMVGMDVITVEGATGGKDT----NYMAKAKAAVELL----------KEYDFVLLNIKGTDEAG 308 (412)
T ss_pred CCceEEEeChHHHHHHHHHcCCceeccCCCcCCCCC----CHHHHHHHHHHHh----------ccCCEEEEeccCcchhh
Confidence 899999999999999999999999999999999999 9999999999999 78999999999999999
Q ss_pred cCCCcccccC-hHHHHHHHHHHHHhcC
Q 030913 82 DDKGKAVAHD-LEYINALVRVILQMAQ 107 (169)
Q Consensus 82 hdG~~~~k~d-iE~iD~lVg~im~~a~ 107 (169)
|+|+++.|+. ||.+|+.++.|++..+
T Consensus 309 H~gd~~~k~~aiE~iD~~l~~il~~l~ 335 (412)
T PRK04024 309 HDGDFEGKVEVIEKIDKMLGYILDNLD 335 (412)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999 9999999999998875
No 3
>PRK04135 cofactor-independent phosphoglycerate mutase; Provisional
Probab=99.73 E-value=7.6e-18 Score=151.88 Aligned_cols=82 Identities=20% Similarity=0.307 Sum_probs=79.0
Q ss_pred CCceeEeecCchhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEeccCCCcC
Q 030913 2 GLKAALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTN 81 (169)
Q Consensus 2 GmKAA~Vt~~~liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d~a~ 81 (169)
|||+|+|+++++++|+|+.+||+|+. +++ ++.+++++++++| ++|||||+|++++|+++
T Consensus 236 Glkga~Ia~~~l~kGi~~~~Gm~~i~-~ga----------~~~~k~~~a~~~l----------~~~DfV~vhvk~~DeaG 294 (395)
T PRK04135 236 KLKAAAIASYPMYRGLAKLVGMDVLP-TGQ----------TLEDEIKTLKENW----------NDYDFFFLHVKKTDSYG 294 (395)
T ss_pred CCceEEEehhHHHHHHHHHcCCeecC-CCC----------CHHHHHHHHHHHH----------hcCCEEEEEeccCchhh
Confidence 89999999999999999999999999 875 8999999999999 89999999999999999
Q ss_pred cCCCcccccC-hHHHHHHHHHHHH
Q 030913 82 DDKGKAVAHD-LEYINALVRVILQ 104 (169)
Q Consensus 82 hdG~~~~k~d-iE~iD~lVg~im~ 104 (169)
|+|+++.|++ ||+||+.+.++++
T Consensus 295 H~gd~~~Kv~~IE~iD~~l~~ll~ 318 (395)
T PRK04135 295 EDGNFEEKVKVIEEVDALLPEILA 318 (395)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999 9999999999883
No 4
>PRK04200 cofactor-independent phosphoglycerate mutase; Provisional
Probab=99.70 E-value=1.8e-17 Score=148.32 Aligned_cols=91 Identities=25% Similarity=0.332 Sum_probs=87.5
Q ss_pred CCceeEeecCchhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEeccCCCcC
Q 030913 2 GLKAALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTN 81 (169)
Q Consensus 2 GmKAA~Vt~~~liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d~a~ 81 (169)
|+|+|+|++.++++|+|+.+||+|+.+++++|..+| +|.+|+++++++| ++|||||+|++++|.++
T Consensus 233 gl~~a~ia~~~l~kGla~~~Gm~~~~vpgatg~~dt----~~~~k~~~a~~~l----------~~~DfV~vh~~~~D~aG 298 (395)
T PRK04200 233 GLKGAVISAVDLLKGIGIYAGLDVIEVPGATGYLDT----NYEGKAEAALEAL----------KTHDFVFVHVEAPDEAG 298 (395)
T ss_pred CCceEEEeccHHHHHHHHHcCCccccCCCccccccc----chHHHHHHHHHHh----------ccCCEEEEEecCcchhh
Confidence 899999999999999999999999999999999999 9999999999999 78999999999999999
Q ss_pred cCCCcccccC-hHHHHHH-HHHHHHhc
Q 030913 82 DDKGKAVAHD-LEYINAL-VRVILQMA 106 (169)
Q Consensus 82 hdG~~~~k~d-iE~iD~l-Vg~im~~a 106 (169)
|+|+++.|++ ||.||+. +++++++-
T Consensus 299 H~gd~~~kv~aiE~lD~~~~~~ll~al 325 (395)
T PRK04200 299 HEGDLEAKIKAIEDIDERVVGPILEAL 325 (395)
T ss_pred ccCCHHHHHHHHHHHHHHhHHHHHHHH
Confidence 9999999999 9999997 56788775
No 5
>TIGR02535 hyp_Hser_kinase proposed homoserine kinase. The proposal that this family encodes a kinase is based on analogy to phosphomutases which are intramolecular phosphotransferases. A mutase active site could evolve to bring together homoserine and a phosphate donor such as phosphoenolpyruvate resulting in a kinase activity.
Probab=99.69 E-value=4.9e-17 Score=145.61 Aligned_cols=92 Identities=21% Similarity=0.352 Sum_probs=87.9
Q ss_pred CCceeEeecCchhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEeccCCCcC
Q 030913 2 GLKAALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTN 81 (169)
Q Consensus 2 GmKAA~Vt~~~liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d~a~ 81 (169)
|+|+|+|++.++++|+|+.+||+|+.+++++|..+| +|.+|++.++++| ++|||||+|++++|.++
T Consensus 234 gl~~a~ia~~~l~kGla~~~Gm~~~~vpgatg~~dt----~~~~k~~~~~~~l----------~~~Dfv~vh~~~~D~aG 299 (396)
T TIGR02535 234 GIRGAMISAVDLLKGIGIYAGLERIEVEGATGYLDT----NYEGKVRAALEAL----------ETYDFVVVHVEAPDEAG 299 (396)
T ss_pred CCceEEEeccHHHHHHHHHcCCccccCCcccccccc----chHHHHHHHHHHH----------hhCCEEEEEeCCCChhh
Confidence 899999999999999999999999999999999999 9999999999999 78999999999999999
Q ss_pred cCCCcccccC-hHHHHHH-HHHHHHhcC
Q 030913 82 DDKGKAVAHD-LEYINAL-VRVILQMAQ 107 (169)
Q Consensus 82 hdG~~~~k~d-iE~iD~l-Vg~im~~a~ 107 (169)
|+|+++.|++ ||.+|+. +++++++.+
T Consensus 300 H~gd~~~kv~aIE~lD~~~~~~ll~al~ 327 (396)
T TIGR02535 300 HEGDLEAKIKAIELIDSRIVGPLLEALS 327 (396)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 9999996 568998763
No 6
>TIGR00306 apgM 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, archaeal form. This model describes a set of proteins in the Archaea (two each in Methanococcus jannaschii, Methanobacterium thermoautotrophicum, and Archaeoglobus fulgidus) and in Aquifex aeolicus (1 member).
Probab=99.68 E-value=4e-17 Score=146.31 Aligned_cols=92 Identities=20% Similarity=0.312 Sum_probs=88.6
Q ss_pred CCceeEeecCchhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEeccCCCcC
Q 030913 2 GLKAALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTN 81 (169)
Q Consensus 2 GmKAA~Vt~~~liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d~a~ 81 (169)
|+|+|+|++.++++|+|+.+||+|+.+++++|..+| +|.+|+++++++| ++|||||+|++++|.++
T Consensus 237 gl~~a~ia~~~l~kGLa~~~Gm~~~~v~gatg~~dt----~~~~k~~~~~~~l----------~~yDfv~v~~~~~D~aG 302 (396)
T TIGR00306 237 GLRGAMIAEVDLIKGLARLIGMDVIRVEGATGGIDT----DYRGKVRALILAL----------EEYDFVLVHTKGPDEAG 302 (396)
T ss_pred CCceEEEechHHHHHHHHHcCCeeecCCcccccccc----cHHHHHHHHHHHh----------hcCCEEEEEecCCChhh
Confidence 899999999999999999999999999999999999 9999999999999 78999999999999999
Q ss_pred cCCCcccccC-hHHHHHHHHHHHHhcC
Q 030913 82 DDKGKAVAHD-LEYINALVRVILQMAQ 107 (169)
Q Consensus 82 hdG~~~~k~d-iE~iD~lVg~im~~a~ 107 (169)
|+|+++.|++ ||.+|+.+..++++.+
T Consensus 303 H~gd~~~k~~aIE~iD~~l~~~l~~l~ 329 (396)
T TIGR00306 303 HDGDPELKVRAIEKIDSKIVGPLLALD 329 (396)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999 9999999997787753
No 7
>PF01676 Metalloenzyme: Metalloenzyme superfamily; InterPro: IPR006124 This domain unites alkaline phosphatase, N-acetylgalactosamine-4-sulphatase, and cerebroside sulphatase, enzymes with known three-dimensional structures, with phosphopentomutase, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, phosphoglycerol transferase, phosphonate monoesterase, streptomycin-6-phosphate phosphatase, alkaline phosphodiesterase/nucleotide pyrophosphatase PC-1, and several closely related sulphatases. This domain is also related to alkaline phosphatase IPR001952 from INTERPRO []. The most conserved residues are probably involved in metal binding and catalysis.; GO: 0003824 catalytic activity, 0046872 metal ion binding; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3UN5_F 3UN3_B 3M8Y_C 3UO0_B 3UN2_B 3UNY_E ....
Probab=99.33 E-value=7.5e-13 Score=110.56 Aligned_cols=113 Identities=17% Similarity=0.293 Sum_probs=94.0
Q ss_pred CCceeEeecCchhhhhhhhhc-ceeeecCcccccCCCCCCCChhHH--HHHHHHHhccccCcccccCcccEEEEEeccCC
Q 030913 2 GLKAALITTNSRLKSFGDKLG-FATLQLNELIETSDSLSGSPIDVV--ASELLKLLGLQRGKMEEVSQFDLVLVHIGAGE 78 (169)
Q Consensus 2 GmKAA~Vt~~~liksfg~~lG-f~V~~~~~l~g~~ds~~~~~~~~~--a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d 78 (169)
|++++.|+.++.+.+++..+| +++...+++++..++ ++.++ ++++++.| +..+|||||+|++.+|
T Consensus 85 ~l~~~~ia~~~~~~~i~~~~~g~~v~~~~g~t~~~~~----~~~~~~~~~~~~~~l--------~~~~~~~v~~~~~~~D 152 (252)
T PF01676_consen 85 GLKGAGIAETPKIGGIADFFGGMDVISVEGATGDVDP----DMSAKEIAEAAIEAL--------KKDKYDFVFVHVKGTD 152 (252)
T ss_dssp THHEEEEEECHHHHHHHHHTTTEEEE--STSSCCGST----TTTHHHHHHHHHHHH--------HHTTSSEEEEEEEHHH
T ss_pred CceecceecccccceeHHHhCCccccccccccccccc----chhhHHHHHHHHHhh--------hcccCCeEEEeecCcc
Confidence 689999999999999999999 999999999998888 55444 89999999 6689999999999999
Q ss_pred CcCcCCCcccccC-hHHHHHHHHHHHHhc-CCcccccceeEEEEEEeeccccccCC
Q 030913 79 KTNDDKGKAVAHD-LEYINALVRVILQMA-QPATEVGSRLHLSVVLSYGQVLEADN 132 (169)
Q Consensus 79 ~a~hdG~~~~k~d-iE~iD~lVg~im~~a-~~gs~i~srlhlsvvlsYG~~~~~~~ 132 (169)
.++|+++++.+.. ||++|+.|+++++.. +++ .-|.|.=-.|+...-..
T Consensus 153 ~~GH~~~~~~~~~~ie~~D~~l~~l~~~~~~~~------~~liiTaDHg~~~~~~~ 202 (252)
T PF01676_consen 153 EAGHRGDPEAYIEAIERIDRFLGRLLEALDKED------DLLIITADHGNDETMGH 202 (252)
T ss_dssp HHHTTT-HHHHHHHHHHHHHHHHHHHHHHHHTT------EEEEEEESSBSTTTSBS
T ss_pred hhhccCCHHHHHHHHHHHHHHHHHHHHHHhcCC------CEEEEECCCCCccccCC
Confidence 9999999999999 999999999999986 433 34555556676554433
No 8
>PRK12383 putative mutase; Provisional
Probab=98.57 E-value=1.3e-07 Score=86.23 Aligned_cols=86 Identities=13% Similarity=0.115 Sum_probs=68.6
Q ss_pred eeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEeccCCCcCcCCCcccccC-hHHHHHHHHHH
Q 030913 24 ATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDKGKAVAHD-LEYINALVRVI 102 (169)
Q Consensus 24 ~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d~a~hdG~~~~k~d-iE~iD~lVg~i 102 (169)
+++..+++++.... .+.+.++.+++++| +...+||||+|++..|.++|+++.+.+.. ||++|+.++.+
T Consensus 255 Di~s~~G~t~~~~~---~~t~~~~~~~l~aL--------~~~~~dlvfvnl~~~D~~GH~~d~~~y~~aiE~iD~~lg~l 323 (406)
T PRK12383 255 DIVNNPYGVSWQNL---VDTQRVMDITLDEF--------NTHPTAFICTNIQETDLAGHAEDVARYAERLEVVDRNLARL 323 (406)
T ss_pred HeeccCCccccccc---CCHHHHHHHHHHHH--------hcCCCCEEEEeccCCccccccCCHHHHHHHHHHHHHHHHHH
Confidence 77777888775544 25679999999999 22348999999999999999999999999 99999999999
Q ss_pred HHhcCCcccccceeEEEEEEeecc
Q 030913 103 LQMAQPATEVGSRLHLSVVLSYGQ 126 (169)
Q Consensus 103 m~~a~~gs~i~srlhlsvvlsYG~ 126 (169)
++.-+++. .|.+.--.|+
T Consensus 324 l~~L~~~~------lliITaDHG~ 341 (406)
T PRK12383 324 LEAMTPDD------CLVVMADHGN 341 (406)
T ss_pred HHHhccCC------EEEEEcCCCC
Confidence 99887532 3444444555
No 9
>PRK05434 phosphoglyceromutase; Provisional
Probab=97.88 E-value=2e-05 Score=73.72 Aligned_cols=60 Identities=10% Similarity=0.233 Sum_probs=53.4
Q ss_pred CChhHHHHHHHHHhccccCcccccCcccEEEEEeccCCCcCcCCCcccccC-hHHHHHHHHHHHHhcCC
Q 030913 41 SPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDKGKAVAHD-LEYINALVRVILQMAQP 108 (169)
Q Consensus 41 ~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d~a~hdG~~~~k~d-iE~iD~lVg~im~~a~~ 108 (169)
-++..++.++++.| +..+|||||+|+..+|.++|+|+++.+.. ||.+|+.||+|++..+.
T Consensus 370 Ms~~e~~d~~i~~l--------~~~~~Dfv~vnf~~~D~vGHtg~~~a~~~AIe~vD~~LGrll~aLk~ 430 (507)
T PRK05434 370 MSAYEVTDKLVEAI--------ESGKYDFIILNFANPDMVGHTGNLEAAVKAVEAVDECLGRVVDAVLK 430 (507)
T ss_pred CcHHHHHHHHHHHH--------hccCCCEEEEEecCcchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36677999999999 23579999999999999999999999999 99999999999998753
No 10
>PLN02538 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
Probab=97.83 E-value=2.8e-05 Score=73.81 Aligned_cols=80 Identities=18% Similarity=0.138 Sum_probs=65.1
Q ss_pred cCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEeccCCCcCcCCCcccccC-hHHHHHHHHHHHHhcCC-ccc
Q 030913 34 TSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDKGKAVAHD-LEYINALVRVILQMAQP-ATE 111 (169)
Q Consensus 34 ~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d~a~hdG~~~~k~d-iE~iD~lVg~im~~a~~-gs~ 111 (169)
++|---.-++..++.++++.+ ...+|||||+|+..+|.++|.|+++.++. ||.+|+.+++|+++.++ |
T Consensus 396 tyd~~PeMSA~eVtd~~i~~i--------~~~~ydfi~vNfan~DmvGHtG~~ea~ikAIE~vD~~Lg~Il~al~~~g-- 465 (558)
T PLN02538 396 PFNVQPKMKALEIAEKARDAL--------LSGKFDQVRVNLANGDMVGHTGDLEATIVACEAVDAAVKEILDAVEQVG-- 465 (558)
T ss_pred CcccCCCCCHHHHHHHHHHHH--------hcCCCCEEEEeccCcccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC--
Confidence 344433446677899999999 44679999999999999999999999999 99999999999998632 3
Q ss_pred ccceeEEEEEEeeccc
Q 030913 112 VGSRLHLSVVLSYGQV 127 (169)
Q Consensus 112 i~srlhlsvvlsYG~~ 127 (169)
-.|.|.--.||+
T Consensus 466 ----~~liITADHGNa 477 (558)
T PLN02538 466 ----GIYLVTADHGNA 477 (558)
T ss_pred ----CEEEEeCCCCCc
Confidence 346666678877
No 11
>TIGR01696 deoB phosphopentomutase. This protein is involved in the purine and pyrimidine salvage pathway. It catalyzes the conversion of D-ribose 1-phosphate to D-ribose 5-phosphate and the conversion of 2-deoxy-D-ribose 1-phosphate to 2-deoxy-D-ribose 5-phosphate. The seed members of this protein are characterized deoB proteins from E.Coli and Bacillus. This model matches pfam01676 for Metalloenzyme superfamily.
Probab=97.62 E-value=0.00012 Score=66.65 Aligned_cols=86 Identities=6% Similarity=0.022 Sum_probs=65.2
Q ss_pred hhhhhhhhhcceeeec---------CcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEeccCCC-cCc
Q 030913 13 RLKSFGDKLGFATLQL---------NELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEK-TND 82 (169)
Q Consensus 13 liksfg~~lGf~V~~~---------~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d~-a~h 82 (169)
.+--..+..|.+|+.+ .+++....+ .+.+..+.+++++| +...+||||+|++..|. ++|
T Consensus 218 Tvld~l~~aG~~V~~VGki~DiF~g~Glt~a~~~---~~~~~~~~~~l~aL--------~~~~~~lif~nl~d~D~~~GH 286 (381)
T TIGR01696 218 TVLQKLKDEGHDVISIGKIADIYDGEGITKKVRT---TSNMDGMDATIKEM--------KEDFTGISFTNLVDFDALWGH 286 (381)
T ss_pred CHHHHHHHCCCeEEEEccHHhEecCCCcccccCC---CCHHHHHHHHHHHH--------hcCCCCEEEEEeCCCccccCC
Confidence 3444455666666554 344443333 26788899999999 22348999999999995 799
Q ss_pred CCCcccccC-hHHHHHHHHHHHHhcCCc
Q 030913 83 DKGKAVAHD-LEYINALVRVILQMAQPA 109 (169)
Q Consensus 83 dG~~~~k~d-iE~iD~lVg~im~~a~~g 109 (169)
.++...+.. +|++|+.++.+++..+++
T Consensus 287 ~~d~~~y~~ale~vD~~Lg~ll~~L~~~ 314 (381)
T TIGR01696 287 RRDVAGYAAALELFDRRLPELFSLLRED 314 (381)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 999999999 999999999999998764
No 12
>PRK05362 phosphopentomutase; Provisional
Probab=97.32 E-value=0.00063 Score=62.06 Aligned_cols=59 Identities=12% Similarity=0.039 Sum_probs=52.9
Q ss_pred ChhHHHHHHHHHhccccCcccc-cCcccEEEEEeccCCC-cCcCCCcccccC-hHHHHHHHHHHHHhcCC
Q 030913 42 PIDVVASELLKLLGLQRGKMEE-VSQFDLVLVHIGAGEK-TNDDKGKAVAHD-LEYINALVRVILQMAQP 108 (169)
Q Consensus 42 ~~~~~a~~al~LLGf~egk~~~-~s~fDlVFlHI~a~d~-a~hdG~~~~k~d-iE~iD~lVg~im~~a~~ 108 (169)
+....+.++++.| + ..++||||+|+...|. ++|.++.+.+.. +|++|+.|+.+++..++
T Consensus 260 ~~~~~~~~ale~L--------~~~~~~~fvfvn~~~~D~~~GH~~~~~~y~~ale~~D~~lg~ll~~L~~ 321 (394)
T PRK05362 260 SNMDGMDATIEEM--------KEAGDNGLVFTNLVDFDSLYGHRRDVAGYAAALEEFDARLPELLAALKE 321 (394)
T ss_pred CHHHHHHHHHHHH--------HhCCCCcEEEEecccCccccCCcCCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6788999999999 2 3478999999999998 599999999999 99999999999999875
No 13
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. This protein is about double in length of, and devoid of homology to the form of phosphoglycerate mutase that uses 2,3-bisphosphoglycerate as a cofactor.
Probab=97.11 E-value=0.00093 Score=62.83 Aligned_cols=68 Identities=16% Similarity=0.252 Sum_probs=56.4
Q ss_pred ccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEeccCCCcCcCCCcccccC-hHHHHHHHHHHHHhcCC
Q 030913 33 ETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDKGKAVAHD-LEYINALVRVILQMAQP 108 (169)
Q Consensus 33 g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d~a~hdG~~~~k~d-iE~iD~lVg~im~~a~~ 108 (169)
.+.|--..-.....+.++++.+ +..+|||||+|...+|-++|.|+.+...+ ||.+|+.||+|++..+.
T Consensus 356 ~tyd~~PeMsa~evtd~~i~~I--------~~~k~dfi~vnfan~DmvGHtg~~~a~v~AIE~vD~~LGrIl~aLke 424 (501)
T TIGR01307 356 ATYDLQPEMSAKAVTDAVLEAI--------AQGKFDLIVVNFANPDMVGHTGNFEAAIKAVEALDVCLGRIVEACKK 424 (501)
T ss_pred CccccCCccCHHHHHHHHHHHH--------hccCCCEEEEECCCcccccCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444333446677889999999 33569999999999999999999998888 99999999999999753
No 14
>cd00016 alkPPc Alkaline phosphatase homologues; alkaline phosphatases are non-specific phosphomonoesterases that catalyze the hydrolysis reaction via a phosphoseryl intermediate to produce inorganic phosphate and the corresponding alcohol, optimally at high pH. Alkaline phosphatase exists as a dimer, each monomer binding 2 zinc atoms and one magnesium atom, which are essential for enzymatic activity.
Probab=94.88 E-value=0.043 Score=49.63 Aligned_cols=59 Identities=10% Similarity=0.132 Sum_probs=50.4
Q ss_pred CCChhHHHHHHHHHhccccCcccccCcccEEEEEecc--CCCcCcCCCcccccC-hHHHHHHHHHHHHhcC
Q 030913 40 GSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGA--GEKTNDDKGKAVAHD-LEYINALVRVILQMAQ 107 (169)
Q Consensus 40 ~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a--~d~a~hdG~~~~k~d-iE~iD~lVg~im~~a~ 107 (169)
.++....+.+++++|- +..+-.|||+.. .|.++|..+...+.+ ++.+|+.|+.+++..+
T Consensus 230 ~psL~emt~~al~~L~---------~~~~gFfl~ve~~~iD~~gH~~d~~~~~~~l~~~D~av~~~l~~l~ 291 (384)
T cd00016 230 EPSLAEMTEKAIDVLS---------KNPNGFFLMVEGGRIDHAHHANDAAGALSETLAFDDAVEAALDFAK 291 (384)
T ss_pred CCCHHHHHHHHHHHHH---------hcCCcEEEEEeCCCCCcccCCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4688999999999991 234777777776 899999999999999 9999999999999875
No 15
>COG0696 GpmI Phosphoglyceromutase [Carbohydrate transport and metabolism]
Probab=88.62 E-value=1 Score=43.13 Aligned_cols=88 Identities=13% Similarity=0.187 Sum_probs=67.2
Q ss_pred cccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEeccCCCcCcCCCcccccC-hHHHHHHHHHHHHhcCCcc
Q 030913 32 IETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDKGKAVAHD-LEYINALVRVILQMAQPAT 110 (169)
Q Consensus 32 ~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d~a~hdG~~~~k~d-iE~iD~lVg~im~~a~~gs 110 (169)
+.++|.--+-..-.+..++++.+ +.-.||++.++-.-+|-.+|-|+++..++ +|-+|+-||+|.+..
T Consensus 362 VaTYDl~PEMSa~evtd~~~~~i--------~~g~~D~iV~N~ANpDMVGHTG~~eatiKAvEavD~~lg~ivd~~---- 429 (509)
T COG0696 362 VATYDLKPEMSAKEVTDALVEAI--------EKGKYDLIVLNYANPDMVGHTGNFEATIKAVEAVDECLGRIVDAV---- 429 (509)
T ss_pred ccccccCcccchHHHHHHHHHHH--------hCCCCCEEEEecCCCccCcccccHHHHHHHHHHHHHHHHHHHHHH----
Confidence 34555543445567778888888 33458999999999999999999999999 999999999999984
Q ss_pred cccceeEEEEEEeeccccccCC
Q 030913 111 EVGSRLHLSVVLSYGQVLEADN 132 (169)
Q Consensus 111 ~i~srlhlsvvlsYG~~~~~~~ 132 (169)
..-.-++-+.---|++-.--+
T Consensus 430 -~~~gg~~~iTaDHGNaE~m~d 450 (509)
T COG0696 430 -KKNGGTLLITADHGNAEQMSD 450 (509)
T ss_pred -HhcCCeEEEeecCcchhhccC
Confidence 334456666666777765443
No 16
>KOG4513 consensus Phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=88.32 E-value=0.9 Score=42.99 Aligned_cols=78 Identities=14% Similarity=0.081 Sum_probs=62.7
Q ss_pred ChhHHHHHHHHHhccccCcccccCcccEEEEEeccCCCcCcCCCcccccC-hHHHHHHHHHHHHhcCCcccccceeEEEE
Q 030913 42 PIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDKGKAVAHD-LEYINALVRVILQMAQPATEVGSRLHLSV 120 (169)
Q Consensus 42 ~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d~a~hdG~~~~k~d-iE~iD~lVg~im~~a~~gs~i~srlhlsv 120 (169)
.+..+|.++...+ +...||+|-+++..+|-.+|-|+++..+- .|--|..||.|.++-+- -+--|+|
T Consensus 388 ~a~eva~ka~~~i--------e~G~~p~v~vNlappDMVGHTG~~EAtv~AcEatD~aig~Iy~A~~~-----~~y~lvv 454 (531)
T KOG4513|consen 388 KALEVAEKARDAI--------ESGKFPQVRVNLAPPDMVGHTGDIEATVVACEATDEAIGKIYDAIEQ-----VGYILVV 454 (531)
T ss_pred hHHHHHHHHHHHH--------HcCCCCeEEEcCCCccccCcccchhhhhhHHHHHHHHHHHHHHHHHh-----cCcEEEE
Confidence 3456777888877 66779999999999999999999999888 99999999999998432 2344667
Q ss_pred EEeeccccccCC
Q 030913 121 VLSYGQVLEADN 132 (169)
Q Consensus 121 vlsYG~~~~~~~ 132 (169)
----|||-+-..
T Consensus 455 TADHGNAEkMv~ 466 (531)
T KOG4513|consen 455 TADHGNAEKMVK 466 (531)
T ss_pred EcCCCCHHHhcc
Confidence 777888866544
No 17
>PF01663 Phosphodiest: Type I phosphodiesterase / nucleotide pyrophosphatase; InterPro: IPR002591 This family consists of phosphodiesterases, including human plasma-cell membrane glycoprotein PC-1 / alkaline phosphodiesterase I / nucleotide pyrophosphatase (nppase). These enzymes catalyse the cleavage of phosphodiester and phosphosulphate bonds in NAD, deoxynucleotides and nucleotide sugars []. Another member of this family is ATX an autotaxin, tumor cell motility-stimulating protein which exhibits type I phosphodiesterases activity []. The alignment encompasses the active site [, ]. Also present within this family is 60 kDa Ca2+-ATPase from Myroides odoratus []. This signature also hits a number of ethanolamine phosphate transferase involved in glycosylphosphatidylinositol-anchor biosynthesis.; GO: 0003824 catalytic activity; PDB: 2XRG_A 2XR9_A 3T02_A 3T01_A 3SZZ_A 3SZY_A 3T00_A 3NKM_A 3NKN_A 3NKR_A ....
Probab=82.97 E-value=1.6 Score=36.30 Aligned_cols=66 Identities=11% Similarity=0.115 Sum_probs=45.2
Q ss_pred ccCcccEEEEEeccCCCcCcC-CC--cccccChHHHHHHHHHHHHhcCCcccccceeEEEEEEeeccccc
Q 030913 63 EVSQFDLVLVHIGAGEKTNDD-KG--KAVAHDLEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLE 129 (169)
Q Consensus 63 ~~s~fDlVFlHI~a~d~a~hd-G~--~~~k~diE~iD~lVg~im~~a~~gs~i~srlhlsvvlsYG~~~~ 129 (169)
+..++||+++|+...|..+|. |. .+...-+.++|..|+.+++..++- ....+..+.|+=-.|-..-
T Consensus 180 ~~~~pdl~~~~~~~~D~~~H~~g~~s~~~~~~~~~~D~~ig~l~~~l~~~-~~~~~~~iiv~SDHG~~~~ 248 (365)
T PF01663_consen 180 QKERPDLIFVYFPEPDHIGHRYGPDSPEIEDAYRRIDQAIGRLLEALDEN-GLLEDTNIIVTSDHGMTPV 248 (365)
T ss_dssp HTTTESEEEEEEECCHHHHHHH-TTSHHHHHHHHHHHHHHHHHHHHHHHT-T-TTTEEEEEEES---EEE
T ss_pred hhCCCCEEEEEecCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHhh-CCCCceEEEEEccCccccc
Confidence 446699999999999999992 22 222223999999999999996643 2334577777777777666
No 18
>COG1015 DeoB Phosphopentomutase [Carbohydrate transport and metabolism]
Probab=69.02 E-value=10 Score=35.43 Aligned_cols=76 Identities=11% Similarity=0.071 Sum_probs=60.5
Q ss_pred eeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCccc-EEEEEeccCC-CcCcCCCcccccC-hHHHHHHHH
Q 030913 24 ATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFD-LVLVHIGAGE-KTNDDKGKAVAHD-LEYINALVR 100 (169)
Q Consensus 24 ~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fD-lVFlHI~a~d-~a~hdG~~~~k~d-iE~iD~lVg 100 (169)
|+|...|.+....+- +.+.....+++.+ +.++++ |||.++--.| .++|--+...=.+ +|..|+-+.
T Consensus 248 DI~~~~Git~~~~~~---~n~~~~d~tl~~~--------~~~~~~~~vFtNlVdfD~~yGHRrDv~gYa~aLe~FD~rL~ 316 (397)
T COG1015 248 DIYAGQGITEKVKAV---SNMDGMDVTLEEM--------KTAEFNGLVFTNLVDFDSLYGHRRDVAGYAAALEEFDRRLP 316 (397)
T ss_pred hhhccccccccccCC---CcHHHHHHHHHHH--------hcCCCCcEEEEeeeecccccccccchHHHHHHHHHHHHHHH
Confidence 455666776666442 5667788888888 334555 9999999999 8999988888888 999999999
Q ss_pred HHHHhcCCcc
Q 030913 101 VILQMAQPAT 110 (169)
Q Consensus 101 ~im~~a~~gs 110 (169)
.+++.-++..
T Consensus 317 e~~~~l~edD 326 (397)
T COG1015 317 ELIENLREDD 326 (397)
T ss_pred HHHHhcCCCC
Confidence 9999988765
No 19
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=65.96 E-value=20 Score=29.25 Aligned_cols=102 Identities=22% Similarity=0.299 Sum_probs=58.8
Q ss_pred cCchhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEeccCCCcCcCCCcccc
Q 030913 10 TNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDKGKAVA 89 (169)
Q Consensus 10 ~~~liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d~a~hdG~~~~k 89 (169)
+...++.+|+.+|..++..... .+.-..+.++++.+ ..+.||+||+=..+-.. ..
T Consensus 44 a~eQL~~~a~~l~vp~~~~~~~---------~~~~~~~~~~l~~~--------~~~~~D~vlIDT~Gr~~--------~d 98 (196)
T PF00448_consen 44 AVEQLKTYAEILGVPFYVARTE---------SDPAEIAREALEKF--------RKKGYDLVLIDTAGRSP--------RD 98 (196)
T ss_dssp HHHHHHHHHHHHTEEEEESSTT---------SCHHHHHHHHHHHH--------HHTTSSEEEEEE-SSSS--------TH
T ss_pred HHHHHHHHHHHhccccchhhcc---------hhhHHHHHHHHHHH--------hhcCCCEEEEecCCcch--------hh
Confidence 4578899999999998763211 13455677778776 33569999998765431 11
Q ss_pred cC-hHHHHHHHHHHHHhcCCcccccceeEEEEEEeeccccccC--------CCcceeeeeccccc
Q 030913 90 HD-LEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEAD--------NSNLSVLISIDEKS 145 (169)
Q Consensus 90 ~d-iE~iD~lVg~im~~a~~gs~i~srlhlsvvlsYG~~~~~~--------~~~~~v~~~~~e~~ 145 (169)
.+ ++.|.+++..+ .-...||++=.+.|...-+. ...-.|++.-||..
T Consensus 99 ~~~~~el~~~~~~~---------~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~~lIlTKlDet~ 154 (196)
T PF00448_consen 99 EELLEELKKLLEAL---------NPDEVHLVLSATMGQEDLEQALAFYEAFGIDGLILTKLDETA 154 (196)
T ss_dssp HHHHHHHHHHHHHH---------SSSEEEEEEEGGGGGHHHHHHHHHHHHSSTCEEEEESTTSSS
T ss_pred HHHHHHHHHHhhhc---------CCccceEEEecccChHHHHHHHHHhhcccCceEEEEeecCCC
Confidence 11 44444444333 12367777776666543211 01223677777753
No 20
>COG1436 NtpG Archaeal/vacuolar-type H+-ATPase subunit F [Energy production and conversion]
Probab=61.03 E-value=34 Score=26.22 Aligned_cols=68 Identities=22% Similarity=0.303 Sum_probs=49.3
Q ss_pred CCCceeEeecCchhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEeccCCCc
Q 030913 1 MGLKAALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKT 80 (169)
Q Consensus 1 MGmKAA~Vt~~~liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d~a 80 (169)
|.++=|+|-+-..+.+| +.+|++++. -.++ +.+ .++++++-| ..++|+++++|=.
T Consensus 1 ~~~~I~VIGd~dtvtGF-rLaGv~~~~------v~~~----~~~-~~~~~~~~l--------~~~~~~iIiite~----- 55 (104)
T COG1436 1 MMMKIAVIGDRDTVTGF-RLAGVRVVY------VADD----EED-ELRAALRVL--------AEDDVGIILITED----- 55 (104)
T ss_pred CceEEEEEEccchhhce-eeecceeEE------EecC----hhH-HHHHHHHhh--------ccCCceEEEEeHH-----
Confidence 66788889888888888 688888865 1122 222 677888887 4459999999865
Q ss_pred CcCCCcccccChHHHHHHHHHHH
Q 030913 81 NDDKGKAVAHDLEYINALVRVIL 103 (169)
Q Consensus 81 ~hdG~~~~k~diE~iD~lVg~im 103 (169)
-.|+|...+..++
T Consensus 56 ----------~a~~i~~~i~~~~ 68 (104)
T COG1436 56 ----------LAEKIREEIRRII 68 (104)
T ss_pred ----------HHhhhHHHHHHHh
Confidence 3677888887665
No 21
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=57.92 E-value=16 Score=27.66 Aligned_cols=76 Identities=20% Similarity=0.250 Sum_probs=45.2
Q ss_pred ecCchhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEeccCCCcCcCCCccc
Q 030913 9 TTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDKGKAV 88 (169)
Q Consensus 9 t~~~liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d~a~hdG~~~~ 88 (169)
+|.+.|++..+.+|+++....-+ + + +.+...+.+.+++ +++|+|+.- +++-. .
T Consensus 19 ~n~~~l~~~l~~~G~~v~~~~~v-~---D----d~~~i~~~i~~~~----------~~~Dlvitt-GG~g~--------g 71 (133)
T cd00758 19 TNGPALEALLEDLGCEVIYAGVV-P---D----DADSIRAALIEAS----------READLVLTT-GGTGV--------G 71 (133)
T ss_pred chHHHHHHHHHHCCCEEEEeeec-C---C----CHHHHHHHHHHHH----------hcCCEEEEC-CCCCC--------C
Confidence 45668899999999998543222 2 2 4566666666677 569999886 44432 2
Q ss_pred ccC--hHHHHHHHHHHHH----hcCCccc
Q 030913 89 AHD--LEYINALVRVILQ----MAQPATE 111 (169)
Q Consensus 89 k~d--iE~iD~lVg~im~----~a~~gs~ 111 (169)
+.| .+-+.++.+.+.. ..+||+.
T Consensus 72 ~~D~t~~ai~~~g~~~~~g~~~~~~pg~~ 100 (133)
T cd00758 72 RRDVTPEALAELGEREAHGKGVALAPGSR 100 (133)
T ss_pred CCcchHHHHHHhcCEEeccCcccccCCCc
Confidence 234 5555555544433 3345554
No 22
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=56.68 E-value=36 Score=31.67 Aligned_cols=97 Identities=22% Similarity=0.251 Sum_probs=66.5
Q ss_pred chhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEeccCCCcC----------
Q 030913 12 SRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTN---------- 81 (169)
Q Consensus 12 ~liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d~a~---------- 81 (169)
....-+|+.+||.-+--.|+-- ..+..++.||+-= |.|||-+.+-+..+
T Consensus 30 q~A~~y~~~fGfep~A~~~let--------g~~~~~s~alr~g-------------~~vFv~~s~~~p~~~~~G~~l~~H 88 (381)
T KOG0638|consen 30 QAARWYCSGFGFEPLAYRGLET--------GSREWASHALRQG-------------KIVFVFNSAYNPDNSEYGDHLVKH 88 (381)
T ss_pred HHHHHHHhhcCCcchhcccccc--------cchHHHHHHhhcC-------------CEEEEEecCCCCCchhhhhhhhhc
Confidence 3456789999999877776621 3466777776543 99999998876655
Q ss_pred cCCCcccccChHHHHHHHH-HHHHhcCCccc------ccceeEEEEEEeeccccc
Q 030913 82 DDKGKAVAHDLEYINALVR-VILQMAQPATE------VGSRLHLSVVLSYGQVLE 129 (169)
Q Consensus 82 hdG~~~~k~diE~iD~lVg-~im~~a~~gs~------i~srlhlsvvlsYG~~~~ 129 (169)
.||-.....++|.+|+.+. .+-+.|++=++ .-.-.-.-+|.+||.++-
T Consensus 89 gdgvkdvafeVeD~da~~~~~va~Ga~v~~~p~~~~da~G~v~~A~l~tygd~th 143 (381)
T KOG0638|consen 89 GDGVKDVAFEVEDADAIFQEAVANGAKVVRPPWEESDAQGAVTYAVLKTYGDTTH 143 (381)
T ss_pred ccchhceEEEecchHHHHHHHHHcCCcccCCcceeeccCCcEEEEEEecccchhh
Confidence 2343444556999999996 45555655444 233477889999997654
No 23
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=56.37 E-value=64 Score=26.57 Aligned_cols=77 Identities=12% Similarity=0.123 Sum_probs=51.8
Q ss_pred eEeecCchhhhhhhhhcceee--ecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEeccCCCcCcC
Q 030913 6 ALITTNSRLKSFGDKLGFATL--QLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDD 83 (169)
Q Consensus 6 A~Vt~~~liksfg~~lGf~V~--~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d~a~hd 83 (169)
.+.|+.+.|..+++..|..|. +++++... .+ .-......+++.+. + ..++|.|++|-...
T Consensus 44 vVstd~~~i~~~a~~~g~~v~~~r~~~l~~d-~~----~~~~si~~~l~~l~--~-----~~~~d~v~~l~~ts------ 105 (222)
T TIGR03584 44 VVSTDDEEIAEVAKSYGASVPFLRPKELADD-FT----GTAPVVKHAIEELK--L-----QKQYDHACCIYATA------ 105 (222)
T ss_pred EEeCCCHHHHHHHHHcCCEeEEeChHHHcCC-CC----CchHHHHHHHHHHh--h-----cCCCCEEEEecCCC------
Confidence 356778899999999998873 45555332 22 33455666667661 1 03579888887754
Q ss_pred CCcccccChHHHHHHHHHHHH
Q 030913 84 KGKAVAHDLEYINALVRVILQ 104 (169)
Q Consensus 84 G~~~~k~diE~iD~lVg~im~ 104 (169)
.=++.+.|++++.....
T Consensus 106 ----Pl~~~~~I~~~i~~~~~ 122 (222)
T TIGR03584 106 ----PFLQAKILKEAFELLKQ 122 (222)
T ss_pred ----CcCCHHHHHHHHHHHHh
Confidence 55668899999987765
No 24
>smart00098 alkPPc Alkaline phosphatase homologues.
Probab=53.85 E-value=25 Score=32.70 Aligned_cols=78 Identities=15% Similarity=0.253 Sum_probs=56.7
Q ss_pred CCChhHHHHHHHHHhccccCcccccCcccEEEEEeccCCCcCcCCCcccccC-hHHHHHHHHHHHHhcC--Ccccc---c
Q 030913 40 GSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDKGKAVAHD-LEYINALVRVILQMAQ--PATEV---G 113 (169)
Q Consensus 40 ~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d~a~hdG~~~~k~d-iE~iD~lVg~im~~a~--~gs~i---~ 113 (169)
.|....+.++||++|. ...+-| |++|-=+.-|.+.|+++....+. +..+|+.|+.+++.+. +-+.| |
T Consensus 233 ~PsL~eMt~~Al~~L~------~~~~GF-fLmVEgg~ID~a~H~nd~~~~i~E~~~fd~AV~~a~~~~~~~~dTLiiVTA 305 (419)
T smart00098 233 EPSLAEMTEVAIRLLS------KNERGF-FLMVEGGRIDHAHHENDACGALHETVDFDQAIQAALEFAKKEDETLVIVTA 305 (419)
T ss_pred CCCHHHHHHHHHHHhh------cCCCce-EEEEecccCChhhccCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEEe
Confidence 4688899999999992 111222 55555567799999999999999 9999999999998886 44433 3
Q ss_pred ceeEEEEEEee
Q 030913 114 SRLHLSVVLSY 124 (169)
Q Consensus 114 srlhlsvvlsY 124 (169)
-+=|--++++|
T Consensus 306 DH~~g~~~~G~ 316 (419)
T smart00098 306 DHSHVGTFGGY 316 (419)
T ss_pred cCCCccccccc
Confidence 44455555555
No 25
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=51.39 E-value=16 Score=27.79 Aligned_cols=48 Identities=19% Similarity=0.298 Sum_probs=35.5
Q ss_pred ecCchhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEe
Q 030913 9 TTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHI 74 (169)
Q Consensus 9 t~~~liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI 74 (169)
+|.+.|++..+.+|++|....=. . + +.+...+++.+++ +++|+|+.==
T Consensus 17 ~n~~~l~~~l~~~G~~v~~~~~v-~---D----d~~~i~~~l~~~~----------~~~D~VittG 64 (144)
T PF00994_consen 17 SNGPFLAALLEELGIEVIRYGIV-P---D----DPDAIKEALRRAL----------DRADLVITTG 64 (144)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEEE-E---S----SHHHHHHHHHHHH----------HTTSEEEEES
T ss_pred hHHHHHHHHHHHcCCeeeEEEEE-C---C----CHHHHHHHHHhhh----------ccCCEEEEcC
Confidence 46678899999999998665432 2 2 6677777777777 7779998743
No 26
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=51.04 E-value=26 Score=28.41 Aligned_cols=78 Identities=12% Similarity=0.211 Sum_probs=43.9
Q ss_pred cccEEEEEeccCCCcCcCCCcccccChHHHHHHHHHHHHhcCCcccccceeEEEEEEeeccccccCCCcceeeeeccccc
Q 030913 66 QFDLVLVHIGAGEKTNDDKGKAVAHDLEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNSNLSVLISIDEKS 145 (169)
Q Consensus 66 ~fDlVFlHI~a~d~a~hdG~~~~k~diE~iD~lVg~im~~a~~gs~i~srlhlsvvlsYG~~~~~~~~~~~v~~~~~e~~ 145 (169)
+.|+|||= .....-+ ..+++++-..+..+++.-.++.. .-|++||. |++-..- +..|.-..+.++..
T Consensus 2 ~~Dlvfll-D~S~Sm~-------~~~~~~~k~f~~~l~~~l~~~~~---~~rvglv~-fs~~~~~-~~~l~~~~~~~~l~ 68 (224)
T cd01475 2 PTDLVFLI-DSSRSVR-------PENFELVKQFLNQIIDSLDVGPD---ATRVGLVQ-YSSTVKQ-EFPLGRFKSKADLK 68 (224)
T ss_pred CccEEEEE-eCCCCCC-------HHHHHHHHHHHHHHHHhcccCCC---ccEEEEEE-ecCceeE-EecccccCCHHHHH
Confidence 56888873 3222211 12478888888888887655432 56777765 7765432 11222234445556
Q ss_pred cccccccccce
Q 030913 146 SDLSALFPRQS 156 (169)
Q Consensus 146 s~l~~L~PrQS 156 (169)
..++.+.+.+.
T Consensus 69 ~~i~~i~~~~~ 79 (224)
T cd01475 69 RAVRRMEYLET 79 (224)
T ss_pred HHHHhCcCCCC
Confidence 66666666544
No 27
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=49.71 E-value=65 Score=25.17 Aligned_cols=100 Identities=16% Similarity=0.204 Sum_probs=60.9
Q ss_pred hhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEeccCCCcCcCCCcccccChH
Q 030913 14 LKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDKGKAVAHDLE 93 (169)
Q Consensus 14 iksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d~a~hdG~~~~k~diE 93 (169)
++.+=+.+|++++..........+ ..+++.+.+ ++.||.+++.-++|.....++..
T Consensus 16 v~~~L~~~~~ep~i~~~~~~~g~t--------iie~le~~~----------~~~~faIvl~TpDD~~~~~~~~~------ 71 (125)
T PF10137_consen 16 VERFLEKLGLEPIIWHEQPNLGQT--------IIEKLEEAA----------DSVDFAIVLFTPDDIGYSRGEEE------ 71 (125)
T ss_pred HHHHHHhCCCceEEeecCCCCCCc--------hHHHHHHHh----------ccCCEEEEEEcccccccccCCcc------
Confidence 556667789999888777632222 355666666 78899999999999766554443
Q ss_pred HHHHHHHHHHHhcCCcccccceeEEEEEEeeccccc--cCCCcceeeeecccccccccccccc
Q 030913 94 YINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLE--ADNSNLSVLISIDEKSSDLSALFPR 154 (169)
Q Consensus 94 ~iD~lVg~im~~a~~gs~i~srlhlsvvlsYG~~~~--~~~~~~~v~~~~~e~~s~l~~L~Pr 154 (169)
. -....|-- ||+=+|-... ..+..+-+.+.--|++|||+.+.+.
T Consensus 72 -------~--------~~~~aR~N--VifE~G~f~g~LGr~rv~~l~~~~v~~PSDl~Gi~~~ 117 (125)
T PF10137_consen 72 -------D--------LQPRARQN--VIFELGLFIGKLGRERVFILVKGGVELPSDLSGITYI 117 (125)
T ss_pred -------c--------cccccccc--eeehhhHHHhhcCcceEEEEEcCCccCCcccCCeEEE
Confidence 0 11223333 3444443332 2332343555566779999988753
No 28
>PRK01395 V-type ATP synthase subunit F; Provisional
Probab=47.30 E-value=48 Score=25.01 Aligned_cols=53 Identities=13% Similarity=0.302 Sum_probs=38.7
Q ss_pred CCCceeEeecCchhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEec
Q 030913 1 MGLKAALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIG 75 (169)
Q Consensus 1 MGmKAA~Vt~~~liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~ 75 (169)
|-+|=|+|.+...+.|| +.+|++++.+.+ ...+.++++.| ..++|-.||++=.
T Consensus 2 ~~~kIaVIGD~dtv~GF-rLaGi~~~~v~~-------------~ee~~~~i~~l--------~~~d~gII~Ite~ 54 (104)
T PRK01395 2 TMYKIGVVGDKDSILPF-KALGIDVFPVID-------------EQEAINTLRKL--------AMEDYGIIYITEQ 54 (104)
T ss_pred cceeEEEEECHHHHHHH-HHcCCeeEEecC-------------hHHHHHHHHHH--------hcCCcEEEEEcHH
Confidence 45789999999999999 789998865422 13456777766 2367999999644
No 29
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=44.10 E-value=53 Score=28.75 Aligned_cols=25 Identities=8% Similarity=0.232 Sum_probs=22.0
Q ss_pred eeEeecCchhhhhhhhhcceeeecC
Q 030913 5 AALITTNSRLKSFGDKLGFATLQLN 29 (169)
Q Consensus 5 AA~Vt~~~liksfg~~lGf~V~~~~ 29 (169)
+++|||++.+..+|+..|..++.++
T Consensus 120 ~~visn~~~~~~lA~~~gIp~~~~~ 144 (286)
T PRK13011 120 VGVVSNHPDLEPLAAWHGIPFHHFP 144 (286)
T ss_pred EEEEECCccHHHHHHHhCCCEEEeC
Confidence 4568999999999999999998875
No 30
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=42.75 E-value=2.1e+02 Score=26.32 Aligned_cols=106 Identities=19% Similarity=0.329 Sum_probs=60.3
Q ss_pred CCceeEeecCc-------hhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEe
Q 030913 2 GLKAALITTNS-------RLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHI 74 (169)
Q Consensus 2 GmKAA~Vt~~~-------liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI 74 (169)
|-+-++||... +++.+|..+|..|.... .+++ ..+++..+ +.||+|++=.
T Consensus 206 g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~------------~~~~-l~~~L~~~----------~~~DlVLIDT 262 (388)
T PRK12723 206 SLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIE------------SFKD-LKEEITQS----------KDFDLVLVDT 262 (388)
T ss_pred CCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeC------------cHHH-HHHHHHHh----------CCCCEEEEcC
Confidence 34566777665 68899999998874322 2222 45566666 7899999966
Q ss_pred ccCCCcCcCCCcccccChHHHHHHHHHHHHhcCCcccccceeEEEEEEeeccccccC--------CCcceeeeeccccc
Q 030913 75 GAGEKTNDDKGKAVAHDLEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEAD--------NSNLSVLISIDEKS 145 (169)
Q Consensus 75 ~a~d~a~hdG~~~~k~diE~iD~lVg~im~~a~~gs~i~srlhlsvvlsYG~~~~~~--------~~~~~v~~~~~e~~ 145 (169)
.+-. ..+..+|+++- .+++..+| -...||+|=..+|...-.+ ...-.|++.-||..
T Consensus 263 aGr~----------~~~~~~l~el~-~~l~~~~~----~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I~TKlDet~ 326 (388)
T PRK12723 263 IGKS----------PKDFMKLAEMK-ELLNACGR----DAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIFTKLDETT 326 (388)
T ss_pred CCCC----------ccCHHHHHHHH-HHHHhcCC----CCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEEEeccCCC
Confidence 5442 12455566653 34444332 1146666666666322110 11233777777763
No 31
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=42.35 E-value=39 Score=26.02 Aligned_cols=47 Identities=19% Similarity=0.274 Sum_probs=31.2
Q ss_pred ecCchhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEE
Q 030913 9 TTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVH 73 (169)
Q Consensus 9 t~~~liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlH 73 (169)
+|.+.|.+..+.+|++|....=. + + +.+...+.+.+++ ...|+|+.-
T Consensus 27 ~n~~~l~~~l~~~G~~v~~~~~v-~---D----d~~~i~~~l~~~~----------~~~DliItt 73 (144)
T TIGR00177 27 SNGPLLAALLEEAGFNVSRLGIV-P---D----DPEEIREILRKAV----------DEADVVLTT 73 (144)
T ss_pred CcHHHHHHHHHHCCCeEEEEeec-C---C----CHHHHHHHHHHHH----------hCCCEEEEC
Confidence 45668888999999998653322 2 1 4455555555555 578999987
No 32
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=42.27 E-value=56 Score=28.57 Aligned_cols=26 Identities=19% Similarity=0.374 Sum_probs=23.1
Q ss_pred eeEeecCchhhhhhhhhcceeeecCc
Q 030913 5 AALITTNSRLKSFGDKLGFATLQLNE 30 (169)
Q Consensus 5 AA~Vt~~~liksfg~~lGf~V~~~~~ 30 (169)
.++|+|++.+.++|++.|..++.++.
T Consensus 115 ~~visn~~~~~~~A~~~gIp~~~~~~ 140 (280)
T TIGR00655 115 ALVISNHEDLRSLVERFGIPFHYIPA 140 (280)
T ss_pred EEEEEcChhHHHHHHHhCCCEEEcCC
Confidence 46889999999999999999988873
No 33
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=41.86 E-value=41 Score=25.23 Aligned_cols=50 Identities=18% Similarity=0.283 Sum_probs=32.0
Q ss_pred ecCchhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEeccC
Q 030913 9 TTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAG 77 (169)
Q Consensus 9 t~~~liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~ 77 (169)
+|.+.|....+.+|+++....-. . + +.+...+.+-+++ +++|+|+.= +++
T Consensus 18 ~~~~~l~~~l~~~G~~~~~~~~v-~---D----d~~~I~~~l~~~~----------~~~dliitt-GG~ 67 (135)
T smart00852 18 SNGPALAELLTELGIEVTRYVIV-P---D----DKEAIKEALREAL----------ERADLVITT-GGT 67 (135)
T ss_pred CcHHHHHHHHHHCCCeEEEEEEe-C---C----CHHHHHHHHHHHH----------hCCCEEEEc-CCC
Confidence 44568999999999997654333 2 1 4455555555555 568987765 544
No 34
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=41.58 E-value=38 Score=26.32 Aligned_cols=51 Identities=16% Similarity=0.285 Sum_probs=31.6
Q ss_pred cCchhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEeccC
Q 030913 10 TNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAG 77 (169)
Q Consensus 10 ~~~liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~ 77 (169)
|.+.|++..+..|++|....-+ . + +.+...+.+-+++ +.+.+|+|+.- ++.
T Consensus 21 n~~~l~~~l~~~G~~v~~~~~v-~---D----d~~~i~~~l~~~~--------~~~~~DlVitt-GG~ 71 (152)
T cd00886 21 SGPALVELLEEAGHEVVAYEIV-P---D----DKDEIREALIEWA--------DEDGVDLILTT-GGT 71 (152)
T ss_pred hHHHHHHHHHHcCCeeeeEEEc-C---C----CHHHHHHHHHHHH--------hcCCCCEEEEC-CCc
Confidence 5668999999999987553322 2 1 4444444444455 12379999886 443
No 35
>PRK14974 cell division protein FtsY; Provisional
Probab=41.11 E-value=1.7e+02 Score=26.36 Aligned_cols=79 Identities=16% Similarity=0.372 Sum_probs=47.2
Q ss_pred CCceeEeecC-------chhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEe
Q 030913 2 GLKAALITTN-------SRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHI 74 (169)
Q Consensus 2 GmKAA~Vt~~-------~liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI 74 (169)
|.+-++|+.- ..++..+..+|+.+++. ..+. +....+..+++.. ....+|+|++-.
T Consensus 168 g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~-----~~g~----dp~~v~~~ai~~~--------~~~~~DvVLIDT 230 (336)
T PRK14974 168 GFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKH-----KYGA----DPAAVAYDAIEHA--------KARGIDVVLIDT 230 (336)
T ss_pred CCeEEEecCCcCcHHHHHHHHHHHHHcCCceecc-----cCCC----CHHHHHHHHHHHH--------HhCCCCEEEEEC
Confidence 3455555543 35677889999888641 1111 3344566666665 335689999876
Q ss_pred ccCCCcCcCCCcccccChHHHHHHHHHHHHhcCC
Q 030913 75 GAGEKTNDDKGKAVAHDLEYINALVRVILQMAQP 108 (169)
Q Consensus 75 ~a~d~a~hdG~~~~k~diE~iD~lVg~im~~a~~ 108 (169)
.+-. .++.+.++.| ..+.+..+|
T Consensus 231 aGr~----------~~~~~lm~eL-~~i~~~~~p 253 (336)
T PRK14974 231 AGRM----------HTDANLMDEL-KKIVRVTKP 253 (336)
T ss_pred CCcc----------CCcHHHHHHH-HHHHHhhCC
Confidence 6442 2456777776 555555554
No 36
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=40.60 E-value=40 Score=25.68 Aligned_cols=52 Identities=23% Similarity=0.447 Sum_probs=34.6
Q ss_pred CCCceeEeec--Cchhhhhhhhhcc-eeeecCcccccCCCCCCCChhHHHHHHHHHhccccC
Q 030913 1 MGLKAALITT--NSRLKSFGDKLGF-ATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRG 59 (169)
Q Consensus 1 MGmKAA~Vt~--~~liksfg~~lGf-~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~eg 59 (169)
+|++-+++|+ ......+++.+|+ +..-+.+.. .+ +......++++.|+++.+
T Consensus 142 ~Gi~~~i~TGD~~~~a~~~~~~lgi~~~~v~a~~~---~k----P~~k~~~~~i~~l~~~~~ 196 (215)
T PF00702_consen 142 AGIKVAILTGDNESTASAIAKQLGIFDSIVFARVI---GK----PEPKIFLRIIKELQVKPG 196 (215)
T ss_dssp TTEEEEEEESSEHHHHHHHHHHTTSCSEEEEESHE---TT----THHHHHHHHHHHHTCTGG
T ss_pred cCcceeeeecccccccccccccccccccccccccc---cc----ccchhHHHHHHHHhcCCC
Confidence 5788899995 4667889999999 322222221 12 555567899999976554
No 37
>KOG2125 consensus Glycosylphosphatidylinositol anchor synthesis protein [Signal transduction mechanisms]
Probab=39.89 E-value=17 Score=36.52 Aligned_cols=101 Identities=18% Similarity=0.213 Sum_probs=68.7
Q ss_pred ccCcccEEEEEeccCCCcCcCCCc-c--cccChHHHHHHHHHHHHhcCCcccccceeEEEEEEeeccccccCCCcceeee
Q 030913 63 EVSQFDLVLVHIGAGEKTNDDKGK-A--VAHDLEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADNSNLSVLI 139 (169)
Q Consensus 63 ~~s~fDlVFlHI~a~d~a~hdG~~-~--~k~diE~iD~lVg~im~~a~~gs~i~srlhlsvvlsYG~~~~~~~~~~~v~~ 139 (169)
..+++|+.++|..+.|.-+|-+.. - +..+.-+||..|++|-+-+++-.+-= | ++.+=.|+.--++. .--.-.
T Consensus 188 ~~~~Wd~lILHYLGlDHIGH~~G~~Sp~vp~KLkEmDeiv~~I~~~~~~~~s~d---~-tllil~gDHGM~e~-GnHGGs 262 (760)
T KOG2125|consen 188 NSSDWDLLILHYLGLDHIGHVLGPSSPLVPAKLKEMDEIVKRIHDYLMEHRSGD---Q-TLLILCGDHGMTES-GNHGGS 262 (760)
T ss_pred hhcchhHHHHHHhccceeccccCCcchhhhHHHHHHHHHHHHHHHHHhhcCCCC---c-eEEEEEcccccccc-CCCCCC
Confidence 346699999999999988886433 2 33348999999999888555433322 2 22222344333322 122567
Q ss_pred ecccccccccccccc---ceeeccCCccCCCC
Q 030913 140 SIDEKSSDLSALFPR---QSYTMKGETPRNDV 168 (169)
Q Consensus 140 ~~~e~~s~l~~L~Pr---QSYtmkgg~~~~dv 168 (169)
++.|+++.+-.+.|- |+|+-++++.++.|
T Consensus 263 s~~ET~s~l~~~~~N~~~~d~~~a~~~rv~Qi 294 (760)
T KOG2125|consen 263 SPGETSSPLLFLLPNSNISDWLAAGLERVEQI 294 (760)
T ss_pred CcccccccEEEEecCCCCcccchhccchhhhh
Confidence 899999999999995 88999988877654
No 38
>PF02938 GAD: GAD domain; InterPro: IPR004115 This entry represetns an 2 layer alpha/beta insertion domain found in some glutamyl-tRNA amidotransferases and aspartyl tRNA synthetases [, ]. The function of this domain is not yet known.; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0005737 cytoplasm; PDB: 1ZQ1_D 1EQR_B 1IL2_B 1C0A_A 1L0W_A 1G51_B 1EFW_B 2D6F_D.
Probab=37.09 E-value=73 Score=23.06 Aligned_cols=47 Identities=26% Similarity=0.355 Sum_probs=30.2
Q ss_pred cceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEeccC
Q 030913 22 GFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAG 77 (169)
Q Consensus 22 Gf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~ 77 (169)
|+-.+++++ .+-.++..-.=.+....++++.++.++| |+||+..+-.
T Consensus 42 gL~~ikv~~-~~~~s~i~kfl~e~~~~~l~~~~~a~~G--------D~ll~~Ag~~ 88 (95)
T PF02938_consen 42 GLAWIKVEE-GELKSPIAKFLSEEELKALIERLGAKPG--------DLLLFVAGKK 88 (95)
T ss_dssp HCCCEEEST-CEEECTTCCCCHHHHHHHHHHHTT--TT--------EEEEEEEESH
T ss_pred CceeeeEcC-CcccCcccccCCHHHHHHHHHHhCCCCC--------CEEEEECCCH
Confidence 455677777 2223332223357788999999988888 9999987743
No 39
>PRK03957 V-type ATP synthase subunit F; Provisional
Probab=36.85 E-value=84 Score=23.34 Aligned_cols=52 Identities=15% Similarity=0.307 Sum_probs=35.9
Q ss_pred CceeEeecCchhhhhhhhhcce-eeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEec
Q 030913 3 LKAALITTNSRLKSFGDKLGFA-TLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIG 75 (169)
Q Consensus 3 mKAA~Vt~~~liksfg~~lGf~-V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~ 75 (169)
||=|+|++...+.|| +.+|++ ++.++ + ...+.++++-| ++.++|-.||++=.
T Consensus 1 mkIaVIgD~dtv~GF-rLaGi~~~~~v~-------~------~ee~~~~l~~l-------~~~~d~gII~ite~ 53 (100)
T PRK03957 1 MKIAVVGDRDTVTGF-RLAGLTEVYEVK-------N------PEEAKNAIKEL-------VENDEIGIIIITER 53 (100)
T ss_pred CEEEEEeCHHHHHHH-HHcCCCceEEeC-------C------HHHHHHHHHHH-------hhCCCeEEEEEcHH
Confidence 688999999999999 688985 54322 1 14566666644 24567899998544
No 40
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=36.09 E-value=94 Score=27.14 Aligned_cols=53 Identities=23% Similarity=0.328 Sum_probs=35.4
Q ss_pred eeEeecCchhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEE
Q 030913 5 AALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVH 73 (169)
Q Consensus 5 AA~Vt~~~liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlH 73 (169)
.++|||.+.+.++|+..|..++.++--. .+ ...++....+.|+.+ +.||+++-
T Consensus 120 ~~visn~~~~~~lA~~~gIp~~~~~~~~---~~--~~~~~~~~~~~l~~~-----------~~Dlivla 172 (286)
T PRK06027 120 AAVISNHDDLRSLVERFGIPFHHVPVTK---ET--KAEAEARLLELIDEY-----------QPDLVVLA 172 (286)
T ss_pred EEEEEcChhHHHHHHHhCCCEEEeccCc---cc--cchhHHHHHHHHHHh-----------CCCEEEEe
Confidence 4688999999999999999998865421 11 123444444444444 45998874
No 41
>cd00229 SGNH_hydrolase SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=35.77 E-value=65 Score=22.49 Aligned_cols=41 Identities=12% Similarity=0.251 Sum_probs=23.8
Q ss_pred ccCcccEEEEEeccCCCcCcCCCcccccChHHHHHHHHHHHH
Q 030913 63 EVSQFDLVLVHIGAGEKTNDDKGKAVAHDLEYINALVRVILQ 104 (169)
Q Consensus 63 ~~s~fDlVFlHI~a~d~a~hdG~~~~k~diE~iD~lVg~im~ 104 (169)
....+|+|+++++..|..... ......-.+.+.+++..+.+
T Consensus 62 ~~~~~d~vil~~G~ND~~~~~-~~~~~~~~~~~~~~i~~~~~ 102 (187)
T cd00229 62 LKDKPDLVIIELGTNDLGRGG-DTSIDEFKANLEELLDALRE 102 (187)
T ss_pred ccCCCCEEEEEeccccccccc-ccCHHHHHHHHHHHHHHHHH
Confidence 347899999999988753321 00111125556666665555
No 42
>PF01990 ATP-synt_F: ATP synthase (F/14-kDa) subunit; InterPro: IPR008218 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit F found in the V1 complex of V-ATPases (both eukaryotic and bacterial), as well as in the A1 complex of A-ATPases. Subunit F is a 16 kDa protein that is required for the assembly and activity of V-ATPase, and has a potential role in the differential targeting and regulation of the enzyme for specific organelles. This subunit is not necessary for the rotation of the ATPase V1 rotor, but it does promote catalysis []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 2D00_E 3A5C_P 3J0J_H 3A5D_H 2OV6_A 2QAI_B 3AON_B 2I4R_A.
Probab=35.45 E-value=70 Score=23.00 Aligned_cols=50 Identities=16% Similarity=0.278 Sum_probs=34.6
Q ss_pred eEeecCchhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEec
Q 030913 6 ALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIG 75 (169)
Q Consensus 6 A~Vt~~~liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~ 75 (169)
|+|.+...+.|| +.+|++++..+ + +.+...+.+-+++ +.+++-+||+.=.
T Consensus 2 avIGd~~~v~gF-rLaGv~~~~~~-------~----~~ee~~~~l~~l~--------~~~~~gIIii~e~ 51 (95)
T PF01990_consen 2 AVIGDRDTVLGF-RLAGVEGVYVN-------T----DPEEAEEALKELL--------KDEDVGIIIITED 51 (95)
T ss_dssp EEEE-HHHHHHH-HHTTSEEEEES-------H----SHHHHHHHHHHHH--------HHTTEEEEEEEHH
T ss_pred EEEeCHHHHHHH-HHcCCCCccCC-------C----CHHHHHHHHHHHh--------cCCCccEEEeeHH
Confidence 678888888888 68999997776 1 3444455555555 5578888888655
No 43
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=34.59 E-value=53 Score=26.41 Aligned_cols=50 Identities=22% Similarity=0.267 Sum_probs=32.4
Q ss_pred ecCchhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEeccC
Q 030913 9 TTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAG 77 (169)
Q Consensus 9 t~~~liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~ 77 (169)
||.+.|.+..+.+|++|.... .++ + +.+...+.+-+++ +++|+|+.= ++.
T Consensus 19 ~n~~~l~~~L~~~G~~v~~~~-~v~---D----d~~~I~~~l~~~~----------~~~dlVItt-GG~ 68 (170)
T cd00885 19 TNAAFLAKELAELGIEVYRVT-VVG---D----DEDRIAEALRRAS----------ERADLVITT-GGL 68 (170)
T ss_pred hHHHHHHHHHHHCCCEEEEEE-EeC---C----CHHHHHHHHHHHH----------hCCCEEEEC-CCC
Confidence 455688888899999985432 222 2 4455555555566 678999986 444
No 44
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=32.94 E-value=1e+02 Score=23.67 Aligned_cols=44 Identities=7% Similarity=0.066 Sum_probs=25.8
Q ss_pred CcccEEEEEeccCCCcCcCCCcccccChHHHHHHHHHHHHhcCCc
Q 030913 65 SQFDLVLVHIGAGEKTNDDKGKAVAHDLEYINALVRVILQMAQPA 109 (169)
Q Consensus 65 s~fDlVFlHI~a~d~a~hdG~~~~k~diE~iD~lVg~im~~a~~g 109 (169)
.+.|+|++.++.-|.....+. .....++..=..+..+.+.++++
T Consensus 68 ~~pd~V~i~~G~ND~~~~~~~-~~~~~~~~~~~~~~~ii~~~~~~ 111 (193)
T cd01835 68 NVPNRLVLSVGLNDTARGGRK-RPQLSARAFLFGLNQLLEEAKRL 111 (193)
T ss_pred CCCCEEEEEecCcccccccCc-ccccCHHHHHHHHHHHHHHHhcC
Confidence 467999999999887655332 12233444444445555554443
No 45
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=32.69 E-value=69 Score=30.14 Aligned_cols=96 Identities=21% Similarity=0.284 Sum_probs=58.1
Q ss_pred cCchhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEeccCCCcCcCCCcccc
Q 030913 10 TNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDKGKAVA 89 (169)
Q Consensus 10 ~~~liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d~a~hdG~~~~k 89 (169)
+...|+..|+.+|..+--+... .-..+++..| .++|+|||-..+-. -
T Consensus 248 A~EQLk~Ya~im~vp~~vv~~~-------------~el~~ai~~l----------~~~d~ILVDTaGrs----------~ 294 (407)
T COG1419 248 AVEQLKTYADIMGVPLEVVYSP-------------KELAEAIEAL----------RDCDVILVDTAGRS----------Q 294 (407)
T ss_pred HHHHHHHHHHHhCCceEEecCH-------------HHHHHHHHHh----------hcCCEEEEeCCCCC----------c
Confidence 5678999999999988433222 2346788888 99999999665442 1
Q ss_pred cChHHHHHHHHHHHHhcCCcccccceeEEEEEEeeccccccCC----------Ccceeeeecccccc
Q 030913 90 HDLEYINALVRVILQMAQPATEVGSRLHLSVVLSYGQVLEADN----------SNLSVLISIDEKSS 146 (169)
Q Consensus 90 ~diE~iD~lVg~im~~a~~gs~i~srlhlsvvlsYG~~~~~~~----------~~~~v~~~~~e~~s 146 (169)
.|.+++..|-.- ++. ..-++..||||=+.-.++-. -.-+|++.-||+.+
T Consensus 295 ~D~~~i~el~~~-~~~-------~~~i~~~Lvlsat~K~~dlkei~~~f~~~~i~~~I~TKlDET~s 353 (407)
T COG1419 295 YDKEKIEELKEL-IDV-------SHSIEVYLVLSATTKYEDLKEIIKQFSLFPIDGLIFTKLDETTS 353 (407)
T ss_pred cCHHHHHHHHHH-Hhc-------cccceEEEEEecCcchHHHHHHHHHhccCCcceeEEEcccccCc
Confidence 233333333222 111 14577888887665433211 12357788888743
No 46
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=32.28 E-value=1.8e+02 Score=25.74 Aligned_cols=62 Identities=19% Similarity=0.243 Sum_probs=49.8
Q ss_pred hhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEeccCCCcCcCCCcccccCh
Q 030913 13 RLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDKGKAVAHDL 92 (169)
Q Consensus 13 liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d~a~hdG~~~~k~di 92 (169)
-|..+|...||.|++ + +.+.+..+..... +.-.+| |.|-+.+++ .=.|.
T Consensus 59 ~l~~~~~~~G~~vfr--------G-----s~~dVL~Rf~~a~--------~a~~~~-~VVRvTGD~---------P~~dp 107 (241)
T COG1861 59 ALEEVCRSHGFYVFR--------G-----SEEDVLQRFIIAI--------KAYSAD-VVVRVTGDN---------PFLDP 107 (241)
T ss_pred HHHHHHHHcCeeEec--------C-----CHHHHHHHHHHHH--------HhcCCC-eEEEeeCCC---------CCCCH
Confidence 578999999999954 2 4567777777777 566678 999999987 77789
Q ss_pred HHHHHHHHHHHHh
Q 030913 93 EYINALVRVILQM 105 (169)
Q Consensus 93 E~iD~lVg~im~~ 105 (169)
|-+|.+|...++.
T Consensus 108 ~l~d~~v~~~l~~ 120 (241)
T COG1861 108 ELVDAAVDRHLEK 120 (241)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999877765
No 47
>COG1608 Predicted archaeal kinase [General function prediction only]
Probab=32.28 E-value=2.2e+02 Score=25.38 Aligned_cols=63 Identities=25% Similarity=0.365 Sum_probs=44.2
Q ss_pred cChHHHHHHHHH-HHHh------cCCcccc--cceeEEE-------------EEEeeccccccCCCcceeeeeccccccc
Q 030913 90 HDLEYINALVRV-ILQM------AQPATEV--GSRLHLS-------------VVLSYGQVLEADNSNLSVLISIDEKSSD 147 (169)
Q Consensus 90 ~diE~iD~lVg~-im~~------a~~gs~i--~srlhls-------------vvlsYG~~~~~~~~~~~v~~~~~e~~s~ 147 (169)
...++++..|-. +++. ++|.|.. ..|+-.+ |=+.||+|--+++..+ -+.|-|++-.+
T Consensus 77 ~am~~L~~~V~~~l~~~Gv~av~~~P~s~~~~~gr~~~~~l~~i~~~l~~gfvPvl~GDVv~d~~~g~-~IiSGDdIv~~ 155 (252)
T COG1608 77 LAMLELNSIVVDALLDAGVRAVSVVPISFSTFNGRILYTYLEAIKDALEKGFVPVLYGDVVPDDDNGY-EIISGDDIVLH 155 (252)
T ss_pred HHHHHHHHHHHHHHHhcCCccccccCcceeecCCceeechHHHHHHHHHcCCEeeeecceEEcCCCce-EEEeccHHHHH
Confidence 347889999864 4444 4888873 2455555 5689999999988655 44577888888
Q ss_pred cc-cccc
Q 030913 148 LS-ALFP 153 (169)
Q Consensus 148 l~-~L~P 153 (169)
|+ .|-|
T Consensus 156 LA~~l~p 162 (252)
T COG1608 156 LAKELKP 162 (252)
T ss_pred HHHHhCC
Confidence 87 5555
No 48
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=32.16 E-value=65 Score=24.02 Aligned_cols=40 Identities=10% Similarity=0.109 Sum_probs=24.4
Q ss_pred CcccEEEEEeccCCCcCcCC-CcccccChHHHHHHHHHHHH
Q 030913 65 SQFDLVLVHIGAGEKTNDDK-GKAVAHDLEYINALVRVILQ 104 (169)
Q Consensus 65 s~fDlVFlHI~a~d~a~hdG-~~~~k~diE~iD~lVg~im~ 104 (169)
.++|+|+|+++.-|.....+ ......-.+.++.+|..+..
T Consensus 60 ~~~d~v~l~~G~ND~~~~~~~~~~~~~~~~~l~~~v~~~~~ 100 (191)
T cd01834 60 AKPDVVSIMFGINDSFRGFDDPVGLEKFKTNLRRLIDRLKN 100 (191)
T ss_pred CCCCEEEEEeecchHhhcccccccHHHHHHHHHHHHHHHHc
Confidence 56899999999887654311 00111115677777776653
No 49
>cd01145 TroA_c Periplasmic binding protein TroA_c. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=31.66 E-value=67 Score=25.97 Aligned_cols=55 Identities=16% Similarity=0.221 Sum_probs=41.5
Q ss_pred eEeecCchhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEE
Q 030913 6 ALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVH 73 (169)
Q Consensus 6 A~Vt~~~liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlH 73 (169)
-+||..+.+..|.+.+|-+.+++..++....+ ...|+-+++-+-++ ++-|+||.+
T Consensus 4 ~Vvts~~pl~~iv~~I~gd~~~V~~l~p~g~d--pH~ye~tp~d~~~l-----------~~Adliv~~ 58 (203)
T cd01145 4 NVVVTFPDLKDLVREVAGDAVIVSALTPPGVD--PHQYQLKPSDIAKM-----------RKADLVVTS 58 (203)
T ss_pred eEEEEChHHHHHHHHHcCCcEEEEEecCCCCC--cccccCCHHHHHHH-----------hcCCEEEEc
Confidence 48999999999999999998888888654322 34777777775554 444988876
No 50
>PRK01189 V-type ATP synthase subunit F; Provisional
Probab=31.51 E-value=1.3e+02 Score=22.72 Aligned_cols=57 Identities=14% Similarity=0.235 Sum_probs=42.1
Q ss_pred CCCceeEeecCchhhhhhhhhcce-eeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEeccCCC
Q 030913 1 MGLKAALITTNSRLKSFGDKLGFA-TLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEK 79 (169)
Q Consensus 1 MGmKAA~Vt~~~liksfg~~lGf~-V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d~ 79 (169)
|--|=|+|=+...+.|| |.+|++ |+.+++ +..++++++.| ..++|=.||++=...+.
T Consensus 1 m~~kIaVvGd~DtilGF-rlaGi~~v~~~~~-------------~e~~~~~~~~l--------~~~~~gII~iTE~~a~~ 58 (104)
T PRK01189 1 MMSCITVIGERDVVLGF-RLLGIGDTIEAEG-------------KDLVKKFLEIF--------NNPKCKYIFVSESTKNM 58 (104)
T ss_pred CCceEEEEcCHHHHHHH-HHcCCceEEEcCC-------------HHHHHHHHHHH--------hcCCeEEEEEEHHHHhh
Confidence 44567888899999999 689996 865432 23458888888 56789999998776553
No 51
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=31.08 E-value=62 Score=27.76 Aligned_cols=55 Identities=16% Similarity=0.263 Sum_probs=42.1
Q ss_pred eEeecCchhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEE
Q 030913 6 ALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVH 73 (169)
Q Consensus 6 A~Vt~~~liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlH 73 (169)
-+||..+.+..|.+.+|-+.+++.-++...-+ -..|+-+.+-+.++- +=|+||.+
T Consensus 19 ~Vvts~~pl~~~v~~I~Gd~v~V~~Lip~g~d--PH~ye~~p~d~~~l~-----------~Adlvv~~ 73 (287)
T cd01137 19 KVVATFSILADIARNIAGDRVNVTSIVPPGAD--PHEYEPTPSDIKKLS-----------KADLILYN 73 (287)
T ss_pred eEEEEChHHHHHHHHHcCCeeEEEEecCCCCC--ccCCCCCHHHHHHHH-----------hCCEEEEc
Confidence 38999999999999999999999998743222 357888777765554 44988865
No 52
>PLN02917 CMP-KDO synthetase
Probab=30.67 E-value=2.4e+02 Score=24.51 Aligned_cols=92 Identities=21% Similarity=0.236 Sum_probs=53.6
Q ss_pred EeecCchhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEeccCCCcCcCCCc
Q 030913 7 LITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDKGK 86 (169)
Q Consensus 7 ~Vt~~~liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d~a~hdG~~ 86 (169)
+.|+.+.+...++..|..++..+... +.++ +-+..+++.|. .++|.|+++-+..
T Consensus 93 V~~~~e~I~~~~~~~~v~vi~~~~~~-~~GT-------~~~~~a~~~l~---------~~~d~Vlil~gD~--------- 146 (293)
T PLN02917 93 VATDDERIAECCRGFGADVIMTSESC-RNGT-------ERCNEALKKLE---------KKYDIVVNIQGDE--------- 146 (293)
T ss_pred EECChHHHHHHHHHcCCEEEeCCccc-CCch-------HHHHHHHHhcc---------CCCCEEEEecCCc---------
Confidence 34566788888888888776433221 1123 12346777771 2468888776643
Q ss_pred ccccChHHHHHHHHHHHHhcCCcccccce----eEEEEEEeecccc
Q 030913 87 AVAHDLEYINALVRVILQMAQPATEVGSR----LHLSVVLSYGQVL 128 (169)
Q Consensus 87 ~~k~diE~iD~lVg~im~~a~~gs~i~sr----lhlsvvlsYG~~~ 128 (169)
.=++-+.|++++....+. +. .+..- +++.-..+||.+.
T Consensus 147 -PlI~~~tI~~li~~~~~~--~~-~iv~t~~~~~~~~~~~~ygrv~ 188 (293)
T PLN02917 147 -PLIEPEIIDGVVKALQAA--PD-AVFSTAVTSLKPEDASDPNRVK 188 (293)
T ss_pred -CCCCHHHHHHHHHHHHhc--CC-ceEEEEeeecCHHHhcCCCceE
Confidence 456678889988865332 11 22211 2444468899884
No 53
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=30.41 E-value=1.1e+02 Score=22.89 Aligned_cols=17 Identities=35% Similarity=0.438 Sum_probs=14.1
Q ss_pred cccEEEEEeccCCCcCc
Q 030913 66 QFDLVLVHIGAGEKTND 82 (169)
Q Consensus 66 ~fDlVFlHI~a~d~a~h 82 (169)
.+|+|+++++.-|....
T Consensus 63 ~pd~vii~~G~ND~~~~ 79 (199)
T cd01838 63 QPDLVTIFFGANDAALP 79 (199)
T ss_pred CceEEEEEecCccccCC
Confidence 79999999998886543
No 54
>PRK10518 alkaline phosphatase; Provisional
Probab=30.22 E-value=90 Score=29.78 Aligned_cols=62 Identities=13% Similarity=0.160 Sum_probs=48.2
Q ss_pred CCChhHHHHHHHHHhccccCcccccCcccEEEEEeccCCCcCcCCCcccccC-hHHHHHHHHHHHHhcCC
Q 030913 40 GSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDKGKAVAHD-LEYINALVRVILQMAQP 108 (169)
Q Consensus 40 ~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d~a~hdG~~~~k~d-iE~iD~lVg~im~~a~~ 108 (169)
.|....+.+++|++|. ...+-| |++|==+.-|.+.|.++....+. +-.+|+.|+..++.++.
T Consensus 323 ~PsLaeMT~kAI~~Ls------kn~~GF-FLmVEGg~ID~a~H~nda~~~i~E~~~fD~AV~~A~~~~~~ 385 (476)
T PRK10518 323 VPTLAQMTDKAIDLLK------KNEKGF-FLQVEGASIDKQDHAANPCGQIGETVDLDEAVQKALEFARK 385 (476)
T ss_pred CCCHHHHHHHHHHHhc------cCCCce-EEEeeccccchhhccCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678889999999992 112223 44555556799999999988888 88899999999998876
No 55
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=29.79 E-value=67 Score=27.19 Aligned_cols=55 Identities=13% Similarity=0.227 Sum_probs=41.0
Q ss_pred eEeecCchhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEE
Q 030913 6 ALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVH 73 (169)
Q Consensus 6 A~Vt~~~liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlH 73 (169)
-+||..+.+..|.+.+|-+.+++.-++....+ ...|+-+.+-+.++- +=|+||.+
T Consensus 5 ~Vv~s~~pl~~lv~~I~gd~v~V~~l~~~g~d--PH~y~~~p~d~~~l~-----------~Adliv~~ 59 (282)
T cd01017 5 KVVTTFYPLYEFTKAIGGDKADVKLIIPAGTE--PHDFEPSPKDIARIA-----------DADVFVYN 59 (282)
T ss_pred EEEEEehHHHHHHHHhcCCceEEEEecCCCCC--CcCCCCCHHHHHHHH-----------hCCEEEEc
Confidence 37899999999999999999999999763332 357777777665543 33887754
No 56
>PRK03673 hypothetical protein; Provisional
Probab=29.14 E-value=60 Score=29.94 Aligned_cols=49 Identities=20% Similarity=0.247 Sum_probs=33.3
Q ss_pred ecCchhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEec
Q 030913 9 TTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIG 75 (169)
Q Consensus 9 t~~~liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~ 75 (169)
||.+.|....+.+|++|....-. .+ +.+.....+-+++ +++|+|++-=+
T Consensus 21 tN~~~la~~L~~~G~~v~~~~~v----~D----~~~~i~~~l~~a~----------~~~DlVI~tGG 69 (396)
T PRK03673 21 TNAAWLADFFFHQGLPLSRRNTV----GD----NLDALVAILRERS----------QHADVLIVNGG 69 (396)
T ss_pred hHHHHHHHHHHHCCCEEEEEEEc----CC----CHHHHHHHHHHHh----------ccCCEEEEcCC
Confidence 67788999999999998543222 22 4555555555566 78899998644
No 57
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=29.04 E-value=75 Score=28.65 Aligned_cols=47 Identities=17% Similarity=0.251 Sum_probs=29.9
Q ss_pred ecCchhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEE
Q 030913 9 TTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVH 73 (169)
Q Consensus 9 t~~~liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlH 73 (169)
+|.+.|.+..+.+|+++....-+ . + +.+...+.+-+++ +++|+|+.=
T Consensus 195 sn~~~l~~~l~~~G~~~~~~~~v-~---D----d~~~i~~~l~~a~----------~~~Dliitt 241 (394)
T cd00887 195 SNSYMLAALLRELGAEVVDLGIV-P---D----DPEALREALEEAL----------EEADVVITS 241 (394)
T ss_pred ChHHHHHHHHHHCCCEEEEecee-C---C----CHHHHHHHHHHHh----------hCCCEEEEe
Confidence 56678889999999998654332 1 1 4455555555555 457777664
No 58
>COG1785 PhoA Alkaline phosphatase [Inorganic ion transport and metabolism]
Probab=28.61 E-value=99 Score=29.77 Aligned_cols=61 Identities=11% Similarity=0.110 Sum_probs=49.9
Q ss_pred CCChhHHHHHHHHHhccccCcccccCcccEEEEEecc--CCCcCcCCCcccccC-hHHHHHHHHHHHHhcCCc
Q 030913 40 GSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGA--GEKTNDDKGKAVAHD-LEYINALVRVILQMAQPA 109 (169)
Q Consensus 40 ~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a--~d~a~hdG~~~~k~d-iE~iD~lVg~im~~a~~g 109 (169)
.|....+.++||++|. +.-+=-||=|.+ -|.+.|+.+....+. ++-.|+.|...++-|+..
T Consensus 279 ~PsLaeMt~kAi~~L~---------kn~~GFFLMVEGg~ID~a~Hand~~~~i~e~~~fd~Avq~al~fA~k~ 342 (482)
T COG1785 279 EPSLAEMTEKAIDLLS---------KNKKGFFLMVEGGRIDWAGHANDPAGAIGETVAFDEAVQAALDFAEKD 342 (482)
T ss_pred CCcHHHHHHHHHHHhc---------cCCCceEEEEeccccchhhcCcCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4678899999999992 222444666654 589999999999999 999999999999998888
No 59
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=27.73 E-value=1.8e+02 Score=21.49 Aligned_cols=53 Identities=15% Similarity=0.172 Sum_probs=35.5
Q ss_pred CceeEeecCchhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEec
Q 030913 3 LKAALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIG 75 (169)
Q Consensus 3 mKAA~Vt~~~liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~ 75 (169)
||-|+|++...+.|| +.+|++.+.+- + + +..+.++++-| +..++|-+||++=.
T Consensus 1 mkIaVIGD~dtv~GF-rLaGi~~~~~~-------~----~-~ee~~~~l~~l-------~~~~d~gII~Ite~ 53 (100)
T PRK02228 1 MEIAVIGSPEFTTGF-RLAGIRKVYEV-------P----D-DEKLDEAVEEV-------LEDDDVGILVMHDD 53 (100)
T ss_pred CEEEEEeCHHHHHHH-HHcCCceEEee-------C----C-HHHHHHHHHHH-------hhCCCEEEEEEehh
Confidence 788999999999998 68899753110 1 1 23356666643 13477899998754
No 60
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=27.46 E-value=1.5e+02 Score=24.64 Aligned_cols=60 Identities=23% Similarity=0.384 Sum_probs=33.5
Q ss_pred CceeEeecC-------------chhhhhhhhhcceeeecC-cccccCCCCCCCChhHHHHHHHHHhccccCcccccCccc
Q 030913 3 LKAALITTN-------------SRLKSFGDKLGFATLQLN-ELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFD 68 (169)
Q Consensus 3 mKAA~Vt~~-------------~liksfg~~lGf~V~~~~-~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fD 68 (169)
+|+|+||-+ +.|....+.+|++++.+. +.+. + +.+...+.+.+++ +...+|
T Consensus 4 ~~~aIItvSd~~~~G~i~D~ng~~L~~~L~~~G~~g~~v~~~iVp---D----d~~~I~~aL~~a~--------~~~~~D 68 (193)
T PRK09417 4 LKIGLVSISDRASSGVYEDKGIPALEEWLASALTSPFEIETRLIP---D----EQDLIEQTLIELV--------DEMGCD 68 (193)
T ss_pred cEEEEEEEcCcCCCCceeechHHHHHHHHHHcCCCCceEEEEECC---C----CHHHHHHHHHHHh--------hcCCCC
Confidence 567777533 467777788887654321 2222 1 3444444444444 224789
Q ss_pred EEEEEeccCC
Q 030913 69 LVLVHIGAGE 78 (169)
Q Consensus 69 lVFlHI~a~d 78 (169)
+|+.- +++-
T Consensus 69 lIITT-GGtg 77 (193)
T PRK09417 69 LVLTT-GGTG 77 (193)
T ss_pred EEEEC-CCCC
Confidence 99987 5543
No 61
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=27.20 E-value=1.6e+02 Score=24.65 Aligned_cols=27 Identities=11% Similarity=0.242 Sum_probs=21.4
Q ss_pred eeEeecCchh--hhhhhhhcceeeecCcc
Q 030913 5 AALITTNSRL--KSFGDKLGFATLQLNEL 31 (169)
Q Consensus 5 AA~Vt~~~li--ksfg~~lGf~V~~~~~l 31 (169)
.++|||++.. ..+|+..|..+++++..
T Consensus 30 ~~visn~~~~~~~~~A~~~gIp~~~~~~~ 58 (207)
T PLN02331 30 VVVVTNKPGCGGAEYARENGIPVLVYPKT 58 (207)
T ss_pred EEEEEeCCCChHHHHHHHhCCCEEEeccc
Confidence 4688997655 57799999999987765
No 62
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=27.15 E-value=23 Score=23.13 Aligned_cols=44 Identities=11% Similarity=0.174 Sum_probs=32.7
Q ss_pred hhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhcccc
Q 030913 14 LKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQR 58 (169)
Q Consensus 14 iksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~e 58 (169)
|+-+|+.+|..+-++.-+..+... -++....++.++++-|||+.
T Consensus 2 i~dIA~~agvS~~TVSr~ln~~~~-vs~~tr~rI~~~a~~lgY~p 45 (46)
T PF00356_consen 2 IKDIAREAGVSKSTVSRVLNGPPR-VSEETRERILEAAEELGYRP 45 (46)
T ss_dssp HHHHHHHHTSSHHHHHHHHTTCSS-STHHHHHHHHHHHHHHTB-S
T ss_pred HHHHHHHHCcCHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHCCCC
Confidence 678999999999888887555432 24567788888999998864
No 63
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=26.65 E-value=98 Score=24.63 Aligned_cols=52 Identities=10% Similarity=0.129 Sum_probs=31.3
Q ss_pred cCchhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEeccCC
Q 030913 10 TNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGE 78 (169)
Q Consensus 10 ~~~liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d 78 (169)
|.+.|.+..+..|++|....-. . + +.+...+.+-+++ +..++|+|+.= +++-
T Consensus 23 n~~~l~~~L~~~G~~v~~~~iv-~---D----d~~~i~~~l~~~~--------~~~~~DlVItt-GGtg 74 (163)
T TIGR02667 23 SGQYLVERLTEAGHRLADRAIV-K---D----DIYQIRAQVSAWI--------ADPDVQVILIT-GGTG 74 (163)
T ss_pred cHHHHHHHHHHCCCeEEEEEEc-C---C----CHHHHHHHHHHHH--------hcCCCCEEEEC-CCcC
Confidence 4458889999999987543322 2 1 3444444444444 22578999886 5543
No 64
>cd01016 TroA Metal binding protein TroA. These proteins have been shown to function as initial receptors in ABC transport of Zn2+ and possibly Fe3+ in many eubacterial species. The TroA proteins belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=26.31 E-value=88 Score=26.63 Aligned_cols=55 Identities=16% Similarity=0.234 Sum_probs=41.7
Q ss_pred eEeecCchhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEE
Q 030913 6 ALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVH 73 (169)
Q Consensus 6 A~Vt~~~liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlH 73 (169)
-+||....+..|.+.+|-+.+++..++....+ ...|+-+.+-+.++- +-|++|.+
T Consensus 3 ~Vvts~~pl~~iv~~I~gd~v~V~~li~~g~d--pH~yep~p~d~~~l~-----------~Adliv~~ 57 (276)
T cd01016 3 NVVTTTGMIADAVENIGGDHVEVTGLMGPGVD--PHLYKATAGDVEKLQ-----------NADVVFYN 57 (276)
T ss_pred EEEEeChHHHHHHHHHcCCeEEEEEeeCCCCC--cccCCCCHHHHHHHH-----------hCCEEEEc
Confidence 47899999999999999999999999754333 357888877766654 34887743
No 65
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=26.21 E-value=4.1e+02 Score=23.70 Aligned_cols=74 Identities=19% Similarity=0.219 Sum_probs=54.6
Q ss_pred eEeecCchhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEeccCCCcCcCCC
Q 030913 6 ALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDKG 85 (169)
Q Consensus 6 A~Vt~~~liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d~a~hdG~ 85 (169)
.+-|+.+.|...+...|++|+-+..-+ +++| .-.-|+++.|||.+ |-+.++|-+++
T Consensus 47 vVATDde~I~~av~~~G~~avmT~~~h-~SGT-------dR~~Ev~~~l~~~~---------~~iIVNvQGDe------- 102 (247)
T COG1212 47 VVATDDERIAEAVQAFGGEAVMTSKDH-QSGT-------DRLAEVVEKLGLPD---------DEIIVNVQGDE------- 102 (247)
T ss_pred EEEcCCHHHHHHHHHhCCEEEecCCCC-CCcc-------HHHHHHHHhcCCCc---------ceEEEEccCCC-------
Confidence 355889999999999999997655432 2233 35667888887654 78899999886
Q ss_pred cccccChHHHHHHHHHHHHh
Q 030913 86 KAVAHDLEYINALVRVILQM 105 (169)
Q Consensus 86 ~~~k~diE~iD~lVg~im~~ 105 (169)
.=++-+-|++++..+-+.
T Consensus 103 --P~i~p~~I~~~~~~L~~~ 120 (247)
T COG1212 103 --PFIEPEVIRAVAENLENS 120 (247)
T ss_pred --CCCCHHHHHHHHHHHHhC
Confidence 666788888888766544
No 66
>PF03710 GlnE: Glutamate-ammonia ligase adenylyltransferase; InterPro: IPR005190 This is a conserved repeated domain found in GlnE proteins. These proteins adenylate and deadenylate glutamine synthases: ATP + {L-Glutamate:ammonia ligase (ADP-forming)} = Diphosphate + Adenylyl-{L-Glutamate:Ammonia ligase (ADP-forming)}. The domain is related to the nucleotidyltransferase domain IPR002934 from INTERPRO.; GO: 0008882 [glutamate-ammonia-ligase] adenylyltransferase activity; PDB: 1V4A_A 3K7D_A.
Probab=26.17 E-value=96 Score=26.24 Aligned_cols=35 Identities=23% Similarity=0.391 Sum_probs=21.4
Q ss_pred CcccEEEEEeccCCCcCcCCCcccccC-hHHHHHHHHHHHHh
Q 030913 65 SQFDLVLVHIGAGEKTNDDKGKAVAHD-LEYINALVRVILQM 105 (169)
Q Consensus 65 s~fDlVFlHI~a~d~a~hdG~~~~k~d-iE~iD~lVg~im~~ 105 (169)
|+-|+||||=..+++ -...++ -|+..++...++..
T Consensus 145 SDiDLifvy~~~~~~------~~~~~~~~~~~~rl~~~~~~~ 180 (247)
T PF03710_consen 145 SDIDLIFVYDPDGET------GRRSISNQEFFTRLAQRLIRL 180 (247)
T ss_dssp --EEEEEEE---TT-------SSS-SBHHHHHHHHHHHHHHH
T ss_pred cCCceEEEecccccc------ccChhhHHHHHHHHHHHHHHH
Confidence 888999999987775 123344 78999999877765
No 67
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=25.73 E-value=85 Score=26.37 Aligned_cols=55 Identities=16% Similarity=0.170 Sum_probs=42.2
Q ss_pred eEeecCchhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEE
Q 030913 6 ALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVH 73 (169)
Q Consensus 6 A~Vt~~~liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlH 73 (169)
-+||....+..+.+.+|-+.+++..++....+ ...|+-+.+-+-++- +=|+||.+
T Consensus 4 ~Vv~s~~pl~~~v~~I~gd~v~V~~lip~g~d--pH~ye~~p~d~~~l~-----------~Adlvv~~ 58 (266)
T cd01018 4 TVAVSIEPQKYFVEKIAGDTVDVVVLVPPGSN--PHTYEPKPQQMKKLS-----------EADLYFRI 58 (266)
T ss_pred EEEEEehhHHHHHHHHcCCceeEEEeeCCCCC--cCCCCCCHHHHHHHH-----------hCCEEEEc
Confidence 47899999999999999999999988654332 357887777665554 34988876
No 68
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=25.61 E-value=78 Score=23.85 Aligned_cols=56 Identities=18% Similarity=0.333 Sum_probs=33.6
Q ss_pred CCceeEeecCchhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhcccc
Q 030913 2 GLKAALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQR 58 (169)
Q Consensus 2 GmKAA~Vt~~~liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~e 58 (169)
|++-+++|+++.+.-+-+.+|+.-+ ++...+..+.....+......++++.+|++.
T Consensus 104 g~~i~i~S~~~~~~~~l~~~~l~~~-f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~ 159 (185)
T TIGR02009 104 GIAVGLGSSSKNADRILAKLGLTDY-FDAIVDADEVKEGKPHPETFLLAAELLGVSP 159 (185)
T ss_pred CCeEEEEeCchhHHHHHHHcChHHH-CCEeeehhhCCCCCCChHHHHHHHHHcCCCH
Confidence 6777899998777777778885432 2333322222112244456678888887544
No 69
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=25.52 E-value=3.3e+02 Score=21.31 Aligned_cols=72 Identities=10% Similarity=0.247 Sum_probs=43.5
Q ss_pred CchhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEeccCCCcCcCCCccccc
Q 030913 11 NSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDKGKAVAH 90 (169)
Q Consensus 11 ~~liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d~a~hdG~~~~k~ 90 (169)
++.+..+.+.+||.++...--..... .++.+..++.+++.+ ++=+.|.+|-... .+.
T Consensus 109 ~~~~~~~l~~~G~~~v~w~~~~~D~~---~~~~~~i~~~~~~~~----------~~g~Iil~Hd~~~----------~~~ 165 (191)
T TIGR02764 109 NKAVLKAAESLGYTVVHWSVDSRDWK---NPGVESIVDRVVKNT----------KPGDIILLHASDS----------AKQ 165 (191)
T ss_pred CHHHHHHHHHcCCeEEEecCCCCccC---CCCHHHHHHHHHhcC----------CCCCEEEEeCCCC----------cHh
Confidence 45667788999999876442222111 235566777777766 3347999997311 122
Q ss_pred ChHHHHHHHHHHHHh
Q 030913 91 DLEYINALVRVILQM 105 (169)
Q Consensus 91 diE~iD~lVg~im~~ 105 (169)
.++.+..+|..+.++
T Consensus 166 t~~~l~~~i~~l~~~ 180 (191)
T TIGR02764 166 TVKALPTIIKKLKEK 180 (191)
T ss_pred HHHHHHHHHHHHHHC
Confidence 367777777665543
No 70
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=25.11 E-value=1.9e+02 Score=25.53 Aligned_cols=26 Identities=12% Similarity=0.201 Sum_probs=22.2
Q ss_pred eeEeecCchhhhhhhhhcceeeecCc
Q 030913 5 AALITTNSRLKSFGDKLGFATLQLNE 30 (169)
Q Consensus 5 AA~Vt~~~liksfg~~lGf~V~~~~~ 30 (169)
..+|||++.+...|+..|..++.++-
T Consensus 124 ~~visn~~~~~~~A~~~gIp~~~~~~ 149 (289)
T PRK13010 124 VGIISNHPDLQPLAVQHDIPFHHLPV 149 (289)
T ss_pred EEEEECChhHHHHHHHcCCCEEEeCC
Confidence 46789999999999999999887653
No 71
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=24.48 E-value=69 Score=26.61 Aligned_cols=52 Identities=27% Similarity=0.472 Sum_probs=31.6
Q ss_pred ChhHHHHHHHHHhcccc------Ccccc----------cCcccEEEEEeccCCCcCcCCCcccccC-hHHHHHHHHHHHH
Q 030913 42 PIDVVASELLKLLGLQR------GKMEE----------VSQFDLVLVHIGAGEKTNDDKGKAVAHD-LEYINALVRVILQ 104 (169)
Q Consensus 42 ~~~~~a~~al~LLGf~e------gk~~~----------~s~fDlVFlHI~a~d~a~hdG~~~~k~d-iE~iD~lVg~im~ 104 (169)
..-..|++.++.-|+++ |..++ ..+|||||+--. |.+ .+|++.++ .
T Consensus 81 ~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~-------------K~~y~~y~~~~~----~ 143 (205)
T PF01596_consen 81 ERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDAD-------------KRNYLEYFEKAL----P 143 (205)
T ss_dssp HHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEEST-------------GGGHHHHHHHHH----H
T ss_pred HHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEccc-------------ccchhhHHHHHh----h
Confidence 45567888888877753 43332 247999998543 223 77777654 4
Q ss_pred hcCCcc
Q 030913 105 MAQPAT 110 (169)
Q Consensus 105 ~a~~gs 110 (169)
...||.
T Consensus 144 ll~~gg 149 (205)
T PF01596_consen 144 LLRPGG 149 (205)
T ss_dssp HEEEEE
T ss_pred hccCCe
Confidence 444554
No 72
>TIGR02335 hydr_PhnA phosphonoacetate hydrolase. This family consists of examples of phosphonoacetate hydrolase, an enzyme specific for the cleavage of the C-P bond in phosphonoacetate. Phosphonates are organic compounds with a direct C-P bond that is far less labile that the C-O-P bonds of phosphate attachment sites. Phosphonates may be degraded for phosphorus and energy by broad spectrum C-P lyase encoded by large operon or by specific enzymes for some of the more common phosphonates in nature. This family represents an enzyme from the latter category. It may be found encoded near genes for phosphonate transport and for pther specific phosphonatases.
Probab=24.35 E-value=1.2e+02 Score=27.76 Aligned_cols=64 Identities=9% Similarity=0.132 Sum_probs=41.7
Q ss_pred HHHHHHHhccccCcccccCcccEEEEEeccCCCcCcCCC--cccccC-hHHHHHHHHHHHHhcCCcccccceeEEEEEEe
Q 030913 47 ASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDKG--KAVAHD-LEYINALVRVILQMAQPATEVGSRLHLSVVLS 123 (169)
Q Consensus 47 a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d~a~hdG~--~~~k~d-iE~iD~lVg~im~~a~~gs~i~srlhlsvvls 123 (169)
...++.+| +....||+++ ...|.++|.=. -.+-.+ ++++|+.++.+++. | -.+.|+=-
T Consensus 177 ~~~a~~~l--------~~~~pdllyl--~~~D~~gH~~Gp~S~e~~~~~~~lD~~l~~L~~~---~------~~vvvtaD 237 (408)
T TIGR02335 177 LDAGLSLL--------TNERPDLMYL--STSDYVQHKHAPGEPESNAFYAAMDSRFKRYHEQ---G------AIVAITAD 237 (408)
T ss_pred HHHHHHHH--------hccCCcEEEe--cCcCccccccCCCCHHHHHHHHHHHHHHHHHHHC---C------CEEEEECC
Confidence 55666777 3356798776 47888888621 122233 99999999999884 2 34555556
Q ss_pred eccccc
Q 030913 124 YGQVLE 129 (169)
Q Consensus 124 YG~~~~ 129 (169)
.|-+..
T Consensus 238 HG~~~~ 243 (408)
T TIGR02335 238 HGMNAK 243 (408)
T ss_pred CCCccC
Confidence 676644
No 73
>PF09457 RBD-FIP: FIP domain ; InterPro: IPR019018 The Rab11 GTPase regulates recycling of internalized plasma membrane receptors and is essential for completion of cytokinesis. A family of Rab11 interacting proteins (FIPs) that conserve a C-terminal Rab-binding domain (RBD) selectively recognise the active form of Rab11. FIPs are diverse in sequence length and composition toward their N-termini, presumably a feature that underpins their specific roles in Rab11-mediated vesicle trafficking. They have been divided into three subfamilies (classe I, II, and III)on the basis of domain architecture. Class I FIPs comprises a subfamily of three proteins (Rip11/pp75/FIP5, Rab-coupling protein (RCP), and FIP2) that possess an N- terminal C2 domain, localize to recycling endosomes, and regulate plasma membrane recycling. The class II subfamily consists of two proteins (FIP3/eferin/arfophilin and FIP4) with tandem EF hands and a proline-rich region. Class II FIPs localize to recycling endosomes, the trans-Golgi network, and have been implicated in the regulation of membrane trafficking during cytokinesis. The class III subfamily consists of a single protein, FIP1, which does not contain obvious homology domains or motifs other than the FIP-RBD [, , , ]. The FIP-RBD domain is also found in Rab6-interacting protein Erc1/Elks. Erc1 is the regulatory subunit of the IKK complex and probably recruits IkappaBalpha/NFKBIA to the complex []. It may be involved in the organisation of the cytomatrix at the nerve terminals active zone (CAZ) which regulates neurotransmitter release. It may also be involved in vesicle trafficking at the CAZ, as well as in Rab-6 regulated endosomes to Golgi transport []. The FIB-RBD domain consists of an N-terminal long alpha-helix, followed by a 90 degrees bend at a conserved proline residue, a 3(10) helix and a C-terminal short beta-strand, adopting an "L" shape. The long alpha-helix forms a parallel coiled-coil homodimer that symmetrically interacts with two Rab11 molecules on both sides, forming a quaternary Rab11-(FIP)2-Rab11 complex. The Rab11-interacting region of FIP-RBD is confined to the C-terminal 24 amino acids, which cover the C-terminal half of the long alpha-helix and the short beta-strand [, , , ]. This entry represents the FIP-RBD domain.; PDB: 2HV8_E 2D7C_D 2K6S_B 2GZD_D 2GZH_B.
Probab=24.12 E-value=50 Score=22.25 Aligned_cols=16 Identities=19% Similarity=0.468 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHhcC
Q 030913 92 LEYINALVRVILQMAQ 107 (169)
Q Consensus 92 iE~iD~lVg~im~~a~ 107 (169)
=+|||.++-+||+..|
T Consensus 27 e~YiD~LL~rVmE~~P 42 (48)
T PF09457_consen 27 EDYIDNLLVRVMEQTP 42 (48)
T ss_dssp HHHHHHHHHHHHCC-G
T ss_pred HHHHHHHHHHHHHhCc
Confidence 4799999999998755
No 74
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=23.96 E-value=86 Score=31.80 Aligned_cols=27 Identities=26% Similarity=0.505 Sum_probs=22.8
Q ss_pred CcccEEEEEeccCCCcCcCCCcccccChHHHHHHHH-HHHHh
Q 030913 65 SQFDLVLVHIGAGEKTNDDKGKAVAHDLEYINALVR-VILQM 105 (169)
Q Consensus 65 s~fDlVFlHI~a~d~a~hdG~~~~k~diE~iD~lVg-~im~~ 105 (169)
|+|||+|+=+.-.| |..|.+|. .|++.
T Consensus 517 SRFDL~FiLlD~~n--------------E~~D~~ia~hIld~ 544 (764)
T KOG0480|consen 517 SRFDLFFILLDDCN--------------EVVDYAIARHILDL 544 (764)
T ss_pred hhhcEEEEEecCCc--------------hHHHHHHHHHHHHH
Confidence 99999999998665 77889985 68876
No 75
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=23.69 E-value=97 Score=28.65 Aligned_cols=49 Identities=12% Similarity=0.180 Sum_probs=31.7
Q ss_pred ecCchhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEecc
Q 030913 9 TTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGA 76 (169)
Q Consensus 9 t~~~liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a 76 (169)
||.+.|....+.+|++|....- ++ + +.+...+.+-+++ +++|+|++- ++
T Consensus 20 tN~~~l~~~L~~~G~~v~~~~~-v~---D----d~~~i~~~l~~a~----------~~~DlVItt-GG 68 (413)
T TIGR00200 20 TNAQWLADFLAHQGLPLSRRTT-VG---D----NPERLKTIIRIAS----------ERADVLIFN-GG 68 (413)
T ss_pred chHHHHHHHHHHCCCeEEEEEE-eC---C----CHHHHHHHHHHHh----------cCCCEEEEc-CC
Confidence 3566888889999999865322 22 2 4444444444455 678999995 44
No 76
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=23.55 E-value=4.2e+02 Score=21.78 Aligned_cols=73 Identities=11% Similarity=0.190 Sum_probs=41.0
Q ss_pred CchhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEeccCCCcCcCCCccccc
Q 030913 11 NSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGEKTNDDKGKAVAH 90 (169)
Q Consensus 11 ~~liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d~a~hdG~~~~k~ 90 (169)
++.+..+++.+|+.++...--...-........+..+..+++.+ .+=+.|++|-... .
T Consensus 141 ~~~~~~~l~~~Gy~~v~w~v~~~Dw~~~~~~~~~~~~~~v~~~~----------~~g~IiLlHd~~~------------~ 198 (224)
T TIGR02884 141 SERTLAYTKELGYYTVFWSLAFKDWKVDEQPGWQYAYKQIMKKI----------HPGAILLLHAVSK------------D 198 (224)
T ss_pred CHHHHHHHHHcCCcEEeccccCcccCCCCCCCHHHHHHHHHhcC----------CCCcEEEEECCCC------------C
Confidence 34566788889998764322111111100123344555666554 3448999997422 1
Q ss_pred ChHHHHHHHHHHHHh
Q 030913 91 DLEYINALVRVILQM 105 (169)
Q Consensus 91 diE~iD~lVg~im~~ 105 (169)
.++.++.+|..+.+.
T Consensus 199 t~~aL~~ii~~lk~~ 213 (224)
T TIGR02884 199 NAEALDKIIKDLKEQ 213 (224)
T ss_pred HHHHHHHHHHHHHHC
Confidence 378888888776554
No 77
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=23.29 E-value=1.1e+02 Score=26.82 Aligned_cols=48 Identities=19% Similarity=0.155 Sum_probs=32.0
Q ss_pred ecCchhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEe
Q 030913 9 TTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHI 74 (169)
Q Consensus 9 t~~~liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI 74 (169)
||.+.|......+|++|.... ..++ +.+...+.+-.++ +.+|+||+-=
T Consensus 21 tNa~~la~~L~~~G~~v~~~~----~VgD----~~~~I~~~l~~a~----------~r~D~vI~tG 68 (255)
T COG1058 21 TNAAFLADELTELGVDLARIT----TVGD----NPDRIVEALREAS----------ERADVVITTG 68 (255)
T ss_pred chHHHHHHHHHhcCceEEEEE----ecCC----CHHHHHHHHHHHH----------hCCCEEEECC
Confidence 578888999999999996542 2222 4444444444444 6699999963
No 78
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=23.24 E-value=1e+02 Score=26.92 Aligned_cols=55 Identities=18% Similarity=0.196 Sum_probs=41.8
Q ss_pred eEeecCchhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEE
Q 030913 6 ALITTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVH 73 (169)
Q Consensus 6 A~Vt~~~liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlH 73 (169)
-+||....+..|.+.+|-+++++.-++...-+ ...|+-+.+-+.++- ++ |+||..
T Consensus 26 ~VvaS~~pl~~~v~~I~gd~~~V~~Lvp~g~d--PH~yep~p~d~~~l~--------~A---Dlvv~n 80 (311)
T PRK09545 26 AVVTSIKPLGFIASAIADGVTETEVLLPDGAS--PHDYSLRPSDVKRLQ--------SA---DLVVWV 80 (311)
T ss_pred cEEEEcHHHHHHHHHHcCCCceEEeccCCCCC--CcCCCCCHHHHHHHh--------cC---CEEEEe
Confidence 47899999999999999898888888654333 357888887766654 34 877765
No 79
>PLN02828 formyltetrahydrofolate deformylase
Probab=22.75 E-value=1.6e+02 Score=25.88 Aligned_cols=49 Identities=16% Similarity=0.332 Sum_probs=32.5
Q ss_pred eeEeecCc-----hhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEE
Q 030913 5 AALITTNS-----RLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVH 73 (169)
Q Consensus 5 AA~Vt~~~-----liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlH 73 (169)
.++|||++ .+..+++..|..++.++--. .+ ..+ .+++++| .+.|||+|=
T Consensus 101 ~~ViSn~~~~~~a~~~~~A~~~gIP~~~~~~~~---~~----~~e---~~~~~~l----------~~~DliVLA 154 (268)
T PLN02828 101 TCVISNHERGPNTHVMRFLERHGIPYHYLPTTK---EN----KRE---DEILELV----------KGTDFLVLA 154 (268)
T ss_pred EEEEeCCCCCCCchHHHHHHHcCCCEEEeCCCC---CC----CHH---HHHHHHH----------hcCCEEEEe
Confidence 46788885 78899999999886444311 11 111 3567777 358999874
No 80
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=22.40 E-value=2.3e+02 Score=21.88 Aligned_cols=37 Identities=19% Similarity=0.309 Sum_probs=22.6
Q ss_pred CcccEEEEEeccCCCcCcCCCcccccC----hHHHHHHHHHHH
Q 030913 65 SQFDLVLVHIGAGEKTNDDKGKAVAHD----LEYINALVRVIL 103 (169)
Q Consensus 65 s~fDlVFlHI~a~d~a~hdG~~~~k~d----iE~iD~lVg~im 103 (169)
+++|+|++-++.-|....... .+.+ .+.+.++|..+.
T Consensus 64 ~~pdlVii~~G~ND~~~~~~~--~~~~~~~~~~nl~~ii~~~~ 104 (198)
T cd01821 64 KPGDYVLIQFGHNDQKPKDPE--YTEPYTTYKEYLRRYIAEAR 104 (198)
T ss_pred CCCCEEEEECCCCCCCCCCCC--CCCcHHHHHHHHHHHHHHHH
Confidence 478999999998886543211 1223 455555555544
No 81
>PF04086 SRP-alpha_N: Signal recognition particle, alpha subunit, N-terminal; InterPro: IPR007222 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents the alpha subunit of the SR receptor.; GO: 0003924 GTPase activity, 0005047 signal recognition particle binding, 0005525 GTP binding, 0006184 GTP catabolic process, 0006886 intracellular protein transport, 0005785 signal recognition particle receptor complex; PDB: 2FH5_A 2GO5_1.
Probab=22.03 E-value=1.3e+02 Score=25.48 Aligned_cols=30 Identities=20% Similarity=0.260 Sum_probs=22.0
Q ss_pred cCcccEEEEEeccCCCcCcCCCcccccC-hHHHHHHHHHHHHh
Q 030913 64 VSQFDLVLVHIGAGEKTNDDKGKAVAHD-LEYINALVRVILQM 105 (169)
Q Consensus 64 ~s~fDlVFlHI~a~d~a~hdG~~~~k~d-iE~iD~lVg~im~~ 105 (169)
.++|+||||=|= .++= +-|||.|+..|...
T Consensus 34 ~Ne~~LvfVvvY------------q~il~l~yvd~LL~~v~~~ 64 (279)
T PF04086_consen 34 DNELGLVFVVVY------------QKILQLTYVDKLLDDVKKE 64 (279)
T ss_dssp ETTTTEEEEEEE------------S-GGGHHHHHHHHHHHHHH
T ss_pred eccCCEEEeeee------------cccccchHHHHHHHHHHHH
Confidence 378999999765 3334 89999999766544
No 82
>PRK01215 competence damage-inducible protein A; Provisional
Probab=22.00 E-value=1.2e+02 Score=26.33 Aligned_cols=50 Identities=18% Similarity=0.288 Sum_probs=32.4
Q ss_pred ecCchhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEeccC
Q 030913 9 TTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHIGAG 77 (169)
Q Consensus 9 t~~~liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~ 77 (169)
||.+.|......+|++|.... .++ + +.+...+.+-+++ .++|+||+= ++.
T Consensus 23 tn~~~l~~~L~~~G~~v~~~~-~v~---D----d~~~I~~~l~~a~----------~~~DlVItt-GG~ 72 (264)
T PRK01215 23 TNASWIARRLTYLGYTVRRIT-VVM---D----DIEEIVSAFREAI----------DRADVVVST-GGL 72 (264)
T ss_pred hhHHHHHHHHHHCCCeEEEEE-EeC---C----CHHHHHHHHHHHh----------cCCCEEEEe-CCC
Confidence 455678888999999985432 222 2 4555555555666 567999987 443
No 83
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=21.58 E-value=1e+02 Score=25.42 Aligned_cols=54 Identities=19% Similarity=0.318 Sum_probs=37.3
Q ss_pred EeecCchhhhhhhhhcceeeecCccccc-CCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEEe
Q 030913 7 LITTNSRLKSFGDKLGFATLQLNELIET-SDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVHI 74 (169)
Q Consensus 7 ~Vt~~~liksfg~~lGf~V~~~~~l~g~-~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlHI 74 (169)
+||..+.+..+++.+|-+-+++..++.. .|. ..|+-+.+-+-++- ++ |+||.+=
T Consensus 1 Vv~s~~pl~~lv~~I~gd~v~V~~l~p~~~dp---H~~~~~p~d~~~l~--------~A---dlvv~~G 55 (256)
T PF01297_consen 1 VVASIPPLYDLVKQIGGDKVEVTSLVPPGADP---HDYEPTPSDIKKLQ--------KA---DLVVYNG 55 (256)
T ss_dssp EEESSHHHHHHHHHHHTTGSEEEESSETTSCT---TT----HHHHHHHH--------HS---SEEEES-
T ss_pred CEEEcHHHHHHHHHHhCCceEEEecCCCCCcc---ccccCChHHHHHHH--------hC---CEEEEeC
Confidence 6899999999999999998888888743 333 58888888766664 34 8777653
No 84
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=21.43 E-value=1.8e+02 Score=24.67 Aligned_cols=72 Identities=24% Similarity=0.314 Sum_probs=42.9
Q ss_pred eEeecCchh-----hhhhhhhcceeeecCcccccCCCCCCCC---------hhHHHHHHHHHhccccCccccc------C
Q 030913 6 ALITTNSRL-----KSFGDKLGFATLQLNELIETSDSLSGSP---------IDVVASELLKLLGLQRGKMEEV------S 65 (169)
Q Consensus 6 A~Vt~~~li-----ksfg~~lGf~V~~~~~l~g~~ds~~~~~---------~~~~a~~al~LLGf~egk~~~~------s 65 (169)
++||++|.. .++=+.+|..++..++++.+.+-...-+ .+...+.+=+.| .+.+-+++. +
T Consensus 3 I~ITGTPGvGKTT~~~~L~~lg~~~i~l~el~~e~~~~~~~de~r~s~~vD~d~~~~~le~~~-~~~~~Ivd~H~~hl~~ 81 (180)
T COG1936 3 IAITGTPGVGKTTVCKLLRELGYKVIELNELAKENGLYTEYDELRKSVIVDVDKLRKRLEELL-REGSGIVDSHLSHLLP 81 (180)
T ss_pred EEEeCCCCCchHHHHHHHHHhCCceeeHHHHHHhcCCeeccCCccceEEeeHHHHHHHHHHHh-ccCCeEeechhhhcCC
Confidence 688999864 3333478999999999988777643332 223333333333 222222221 3
Q ss_pred cccEEEEEeccCC
Q 030913 66 QFDLVLVHIGAGE 78 (169)
Q Consensus 66 ~fDlVFlHI~a~d 78 (169)
.+|+|||=-...+
T Consensus 82 ~~dlVvVLR~~p~ 94 (180)
T COG1936 82 DCDLVVVLRADPE 94 (180)
T ss_pred CCCEEEEEcCCHH
Confidence 5899999766554
No 85
>TIGR00638 Mop molybdenum-pterin binding domain. This model describes a multigene family of molybdenum-pterin binding proteins of about 70 amino acids in Clostridium pasteurianum, as a tandemly-repeated domain C-terminal to an unrelated domain in ModE, a molybdate transport gene repressor of E. coli, and in single or tandemly paired domains in several related proteins.
Probab=20.80 E-value=1.1e+02 Score=19.87 Aligned_cols=26 Identities=35% Similarity=0.328 Sum_probs=21.1
Q ss_pred HHHHHHHHHhccccCcccccCcccEEEEEeccCC
Q 030913 45 VVASELLKLLGLQRGKMEEVSQFDLVLVHIGAGE 78 (169)
Q Consensus 45 ~~a~~al~LLGf~egk~~~~s~fDlVFlHI~a~d 78 (169)
....+.++-|++++| |-||+.+++.+
T Consensus 38 ~i~~~~~~~l~l~~G--------~~v~~~ik~~~ 63 (69)
T TIGR00638 38 VITLESVAELGLKPG--------KEVYAVIKAPW 63 (69)
T ss_pred EecHHHHhhCCCCCC--------CEEEEEEECcE
Confidence 344678899999999 89999998774
No 86
>PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A.
Probab=20.27 E-value=1.1e+02 Score=24.27 Aligned_cols=59 Identities=8% Similarity=0.173 Sum_probs=28.8
Q ss_pred hhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHh-ccc-----cCcccccCcccEEEEEe
Q 030913 14 LKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLL-GLQ-----RGKMEEVSQFDLVLVHI 74 (169)
Q Consensus 14 iksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LL-Gf~-----egk~~~~s~fDlVFlHI 74 (169)
..-+++.+|.+++..+......... .++.....++-.-+ ... .....+-++||+|||--
T Consensus 17 A~~Ia~~~gadi~eI~~~~~Y~~~~--~~y~~~~~~~~~e~~~~~~~P~i~~~~~d~~~YD~I~lG~ 81 (156)
T PF12682_consen 17 AEKIAEKTGADIFEIEPVKPYPSDD--LDYRKCISRAKREIKDNNERPEIKPQIPDLSDYDTIFLGT 81 (156)
T ss_dssp HHHHHHCCT-EEEE-BBSTTSSTGG--CSCCHCCCHHHHHHTTTT----BC---S-GGG-SEEEEEE
T ss_pred HHHHHHHHCCCEEEEEeCCCCCcch--hhHHHHHHHHHHHHhcccccccccccccCcccCCEEEEec
Confidence 4567899999999998765544310 13333222222221 000 12234779999999853
No 87
>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional
Probab=20.14 E-value=1.2e+02 Score=27.97 Aligned_cols=47 Identities=17% Similarity=0.299 Sum_probs=30.1
Q ss_pred ecCchhhhhhhhhcceeeecCcccccCCCCCCCChhHHHHHHHHHhccccCcccccCcccEEEEE
Q 030913 9 TTNSRLKSFGDKLGFATLQLNELIETSDSLSGSPIDVVASELLKLLGLQRGKMEEVSQFDLVLVH 73 (169)
Q Consensus 9 t~~~liksfg~~lGf~V~~~~~l~g~~ds~~~~~~~~~a~~al~LLGf~egk~~~~s~fDlVFlH 73 (169)
+|.+.|.+..+.+|++|....-. . + +.+...+.+-+++ +++|+|+.-
T Consensus 220 sN~~~L~a~l~~~G~~v~~~~~v-~---D----d~~~i~~~l~~a~----------~~~DlIItT 266 (419)
T PRK14690 220 ANRPMLLALARRWGHAPVDLGRV-G---D----DRAALAARLDRAA----------AEADVILTS 266 (419)
T ss_pred CHHHHHHHHHHHCCCEEEEEeee-C---C----CHHHHHHHHHHhC----------ccCCEEEEc
Confidence 35568899999999998654322 1 1 3444444444556 668988775
Done!