BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030914
(169 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WUL|A Chain A, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|B Chain B, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|C Chain C, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|D Chain D, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
Length = 118
Score = 110 bits (276), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 72/94 (76%), Gaps = 1/94 (1%)
Query: 71 VKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNV-PISARNILEDPELKSAVKAFSHWPT 129
VK++ V++++KG PE PQCGFS+ V++L + V +A N+L+DPEL+ +K +S+WPT
Sbjct: 17 VKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNWPT 76
Query: 130 FPQIFIKGEFIGGSDIILNMHQSGELKEKLKGIA 163
PQ+++ GEF+GG DI+L MHQ+G+L E+LK +
Sbjct: 77 IPQVYLNGEFVGGCDILLQMHQNGDLVEELKKLG 110
>pdb|1YKA|A Chain A, Solution Structure Of Grx4, A Monothiol Glutaredoxin From
E. Coli
Length = 115
Score = 110 bits (276), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 76/105 (72%)
Query: 65 EVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAF 124
E +++ + ENP++LYMKG P+ P CGFS+ AV+ L A + +IL++P++++ + +
Sbjct: 6 EKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKY 65
Query: 125 SHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLKGIASNQKSD 169
++WPTFPQ+++ GE +GG DI++ M+Q GEL++ +K A+ KS+
Sbjct: 66 ANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKETAAKYKSE 110
>pdb|2WCI|A Chain A, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer
pdb|2WCI|B Chain B, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer
Length = 135
Score = 110 bits (275), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 76/105 (72%)
Query: 65 EVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAF 124
E +++ + ENP++LYMKG P+ P CGFS+ AV+ L A + +IL++P++++ + +
Sbjct: 26 EKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKY 85
Query: 125 SHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLKGIASNQKSD 169
++WPTFPQ+++ GE +GG DI++ M+Q GEL++ +K A+ KS+
Sbjct: 86 ANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKETAAKYKSE 130
>pdb|3GX8|A Chain A, Structural And Biochemical Characterization Of Yeast
Monothiol Glutaredoxin Grx5
Length = 121
Score = 108 bits (271), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 47/101 (46%), Positives = 70/101 (69%), Gaps = 3/101 (2%)
Query: 63 LKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNV---PISARNILEDPELKS 119
+++ +E ++ PV+L+MKG PEFP+CGFS + +LG V +A N+LEDPEL+
Sbjct: 5 IRKAIEDAIESAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELRE 64
Query: 120 AVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLK 160
+K FS WPT PQ+++ EFIGG D+I +M +SGEL + L+
Sbjct: 65 GIKEFSEWPTIPQLYVNKEFIGGCDVITSMARSGELADLLE 105
>pdb|2LKU|A Chain A, Solution Structure Of Reduced Poplar Apo Grxs14
Length = 109
Score = 107 bits (266), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 70/99 (70%)
Query: 62 SLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAV 121
+LK +++ V + V+L+MKG +FPQCGFS V++L + N P + NILE+ L+ +
Sbjct: 6 ALKTTLDKVVTSHKVVLFMKGTKDFPQCGFSQTVVQILKSLNAPFESVNILENELLRQGL 65
Query: 122 KAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLK 160
K +S WPTFPQ++I GEF GG DI + ++SGEL+E+++
Sbjct: 66 KEYSSWPTFPQLYIDGEFFGGCDITVEAYKSGELQEQVE 104
>pdb|3IPZ|A Chain A, Crystal Structure Of Arabidopsis Monothiol Glutaredoxin
Atgr
Length = 109
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 68/99 (68%)
Query: 62 SLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAV 121
LK+ +E+ V V+L+MKG +FP CGFS+ V++L NVP NILE+ L+ +
Sbjct: 6 QLKDTLEKLVNSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGL 65
Query: 122 KAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLK 160
K +S+WPTFPQ++I GEF GG DI L ++GEL+E+++
Sbjct: 66 KEYSNWPTFPQLYIGGEFFGGCDITLEAFKTGELQEEVE 104
>pdb|3ZYW|A Chain A, Crystal Structure Of The First Glutaredoxin Domain Of
Human Glutaredoxin 3 (Glrx3)
pdb|3ZYW|B Chain B, Crystal Structure Of The First Glutaredoxin Domain Of
Human Glutaredoxin 3 (Glrx3)
Length = 111
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 57/91 (62%)
Query: 75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIF 134
P ML+MKG P+ P+CGFS V +L +N+ S+ +I D E++ +KA+S WPT+PQ++
Sbjct: 17 PCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSSWPTYPQLY 76
Query: 135 IKGEFIGGSDIILNMHQSGELKEKLKGIASN 165
+ GE IGG DII + S EL A N
Sbjct: 77 VSGELIGGLDIIKELEASEELDTICPKAAEN 107
>pdb|2YAN|A Chain A, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
pdb|2YAN|B Chain B, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
Length = 105
Score = 87.8 bits (216), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 59/86 (68%)
Query: 76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFI 135
VML+MKG + +CGFS + +L + V +ILED E++ +KA+S+WPT+PQ+++
Sbjct: 19 VMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWPTYPQLYV 78
Query: 136 KGEFIGGSDIILNMHQSGELKEKLKG 161
KGE +GG DI+ + ++GEL L+G
Sbjct: 79 KGELVGGLDIVKELKENGELLPILRG 104
>pdb|1WIK|A Chain A, Solution Structure Of The Picot Homology 2 Domain Of The
Mouse Pkc-Interacting Cousin Of Thioredoxin Protein
Length = 109
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 57/86 (66%)
Query: 76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFI 135
VML+MKG + +CGFS + +L + V +ILED E++ +K FS+WPT+PQ+++
Sbjct: 17 VMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSNWPTYPQLYV 76
Query: 136 KGEFIGGSDIILNMHQSGELKEKLKG 161
+G+ +GG DI+ + +GEL LKG
Sbjct: 77 RGDLVGGLDIVKELKDNGELLPILKG 102
>pdb|3FZ9|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione
pdb|3FZA|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione And Beta-Mercaptoethanol
Length = 112
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 9/101 (8%)
Query: 60 GLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILE----DP 115
G L++ V++ V ENPV++Y K C +SS + NV + E P
Sbjct: 4 GSRLEDAVKKTVAENPVVVYSK-----TWCSYSSEVKSLFKRLNVDPLVVELDELGAQGP 58
Query: 116 ELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELK 156
+++ ++ + T P +FI G+ IGG + +++ GEL+
Sbjct: 59 QIQKVLERLTGQHTVPNVFIGGKHIGGCTDTVKLYRKGELE 99
>pdb|2E7P|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|C Chain C, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|D Chain D, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
Length = 116
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 16/101 (15%)
Query: 75 PVMLYMKGVPEFPQCGFSS----LAVRVLGAYNVPISARNILEDPELKSAVKAFSHWP-- 128
PV+++ K CG+ + L +V +Y V + + + +L+SA +HW
Sbjct: 21 PVVVFSK-----TYCGYCNRVKQLLTQVGASYKV-VELDELSDGSQLQSA---LAHWTGR 71
Query: 129 -TFPQIFIKGEFIGGSDIILNMHQSGELKEKLKGIASNQKS 168
T P +FI G+ IGG D ++ HQ EL L+ A+ K+
Sbjct: 72 GTVPNVFIGGKQIGGCDTVVEKHQRNELLPLLQDAAATAKT 112
>pdb|1B4Q|A Chain A, Solution Structure Of Human Thioltransferase Complex With
Glutathione
Length = 105
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 15/111 (13%)
Query: 64 KEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYN--------VPISARNILEDP 115
+E V ++ V++++K P C +S A +L V I+A N
Sbjct: 2 QEFVNSKIQPGKVVVFIK-----PTCPYSRRAQEILSQLPIKQGLLEFVDITATN--HTN 54
Query: 116 ELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLKGIASNQ 166
E++ ++ + T P++FI + IGGS ++++ QSGEL +LK I + Q
Sbjct: 55 EIQDYLQQLTGARTVPRVFIGKDSIGGSSDLVSLQQSGELLTRLKQIGALQ 105
>pdb|1Z7P|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
pdb|1Z7R|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
Length = 117
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 10/98 (10%)
Query: 75 PVMLYMKGVPEFPQCGFSS----LAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTF 130
PV+++ K CG+ + L +V +Y V + + + +L+SA+ ++ T
Sbjct: 22 PVVVFSK-----TYCGYCNRVKQLLTQVGASYKV-VELDELSDGSQLQSALAHWTGRGTV 75
Query: 131 PQIFIKGEFIGGSDIILNMHQSGELKEKLKGIASNQKS 168
P +FI G+ IGG D ++ HQ EL L+ A+ K+
Sbjct: 76 PNVFIGGKQIGGCDTVVEKHQRNELLPLLQDAAATAKN 113
>pdb|1JHB|A Chain A, Human Glutaredoxin In Fully Reduced Form, Nmr, 20
Structures
Length = 106
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 9/108 (8%)
Query: 64 KEVVEQDVKENPVMLYMKGVPEFPQCG-----FSSLAVRVLGAYNVPISARNILEDPELK 118
+E V ++ V++++K P P C S L ++ V I+A N E++
Sbjct: 3 QEFVNCKIQPGKVVVFIK--PTCPYCRRAQEILSQLPIKQGLLEFVDITATN--HTNEIQ 58
Query: 119 SAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLKGIASNQ 166
++ + T P++FI + IGG ++++ QSGEL +LK I + Q
Sbjct: 59 DYLQQLTGARTVPRVFIGKDCIGGCSDLVSLQQSGELLTRLKQIGALQ 106
>pdb|2KHP|A Chain A, Solution Structure Of Glutaredoxin From Brucella
Melitensis
Length = 92
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFI 135
V++Y + P C + + A +L + + PEL++ ++ S TFPQIFI
Sbjct: 8 VIIYTR-----PGCPYCARAKALLARKGAEFNEIDASATPELRAEMQERSGRNTFPQIFI 62
Query: 136 KGEFIGGSDIILNMHQSGELKEKLK 160
+GG D + + G+L LK
Sbjct: 63 GSVHVGGCDDLYALEDEGKLDSLLK 87
>pdb|2HT9|A Chain A, The Structure Of Dimeric Human Glutaredoxin 2
pdb|2HT9|B Chain B, The Structure Of Dimeric Human Glutaredoxin 2
Length = 146
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Query: 67 VEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNV--PISARNILE-DPELKSAVKA 123
+++ + +N V+++ K C + ++A ++ NV + ++LE + + A+
Sbjct: 42 IQETISDNCVVIFSK-----TSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYK 96
Query: 124 FSHWPTFPQIFIKGEFIGGSDIILNMHQSGEL 155
+ T P+IF+ G FIGG+ +H+ G+L
Sbjct: 97 MTGERTVPRIFVNGTFIGGATDTHRLHKEGKL 128
>pdb|2CQ9|A Chain A, Solution Structure Of Rsgi Ruh-044, An N-Terminal Domain
Of Glutaredoxin 2 From Human Cdna
Length = 130
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Query: 67 VEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNV--PISARNILE-DPELKSAVKA 123
+++ + +N V+++ K C + ++A ++ NV + ++LE + + A+
Sbjct: 20 IQETISDNCVVIFSK-----TSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYK 74
Query: 124 FSHWPTFPQIFIKGEFIGGSDIILNMHQSGEL 155
+ T P+IF+ G FIGG+ +H+ G+L
Sbjct: 75 MTGERTVPRIFVNGTFIGGATDTHRLHKEGKL 106
>pdb|2FLS|A Chain A, Crystal Structure Of Human Glutaredoxin 2 Complexed With
Glutathione
Length = 132
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Query: 67 VEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNV--PISARNILE-DPELKSAVKA 123
+++ + +N V+++ K C + ++A ++ NV + ++LE + + A+
Sbjct: 28 IQETISDNCVVIFSK-----TSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYK 82
Query: 124 FSHWPTFPQIFIKGEFIGGSDIILNMHQSGEL 155
+ T P+IF+ G FIGG+ +H+ G+L
Sbjct: 83 MTGERTVPRIFVNGTFIGGATDTHRLHKEGKL 114
>pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione
Reductase (Smtgr)
Length = 596
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 117 LKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLKGIASNQKSD 169
++ + +FS T PQ+F++G+FIG S +L + + E L GI + K D
Sbjct: 59 IQKCLASFSKIETVPQMFVRGKFIGDSQTVLKYYSNDE----LAGIVNESKYD 107
>pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8C|B Chain B, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8G|A Chain A, Oxidized Thioredoxin Glutathione Reductase From
Schistosoma Mansoni
pdb|2X8H|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Gsh
pdb|2X99|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Nadph
Length = 598
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 117 LKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLKGIASNQKSD 169
++ + +FS T PQ+F++G+FIG S +L + + E L GI + K D
Sbjct: 59 IQKCLASFSKIETVPQMFVRGKFIGDSQTVLKYYSNDE----LAGIVNESKYD 107
>pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin Glutatione
Reductase From Schistosoma Mansoni In Complex With
Auranofin
Length = 598
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 117 LKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLKGIASNQKSD 169
++ + +FS T PQ+F++G+FIG S +L + + E L GI + K D
Sbjct: 59 IQKCLASFSKIETVPQMFVRGKFIGDSQTVLKYYSNDE----LAGIVNESKYD 107
>pdb|3D5J|A Chain A, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
pdb|3D5J|B Chain B, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
Length = 112
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 89 CGFSSLAVRVL-GAYNVPISARNILE------DPELKSAVKAFSHWPTFPQIFIKGEFIG 141
C +S + L NVP S +LE E++ A++ S T P ++I G+ IG
Sbjct: 30 CPYSKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEEISGQKTVPNVYINGKHIG 89
Query: 142 GSDIILNMHQSGELKEKLK 160
G+ + + ++G+L E LK
Sbjct: 90 GNSDLETLKKNGKLAEILK 108
>pdb|3RHB|A Chain A, Crystal Structure Of The Apo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
Length = 113
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Query: 60 GLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNIL-EDPELK 118
G ++E + + V EN V++Y K + C + LG + + + + P+L+
Sbjct: 5 GSRMEESIRKTVTENTVVIYSKTWCSY--CTEVKTLFKRLGVQPLVVELDQLGPQGPQLQ 62
Query: 119 SAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELK 156
++ + T P +F+ G+ IGG + +++ G+L+
Sbjct: 63 KVLERLTGQHTVPNVFVCGKHIGGCTDTVKLNRKGDLE 100
>pdb|3CTF|A Chain A, Crystal Structure Of Oxidized Grx2
pdb|3CTG|A Chain A, Crystal Structure Of Reduced Glutaredoxin 2
Length = 129
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 103 NVPISARNILE------DPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELK 156
NVP S +LE E++ A++ S T P ++I G+ IGG+ + + ++G+L
Sbjct: 62 NVPKSKALVLELDEMSNGSEIQDALEEISGQKTVPNVYINGKHIGGNSDLETLKKNGKLA 121
Query: 157 EKLK 160
E LK
Sbjct: 122 EILK 125
>pdb|3D4M|A Chain A, Glutaredoxin 2 Oxidized Structure
Length = 109
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 103 NVPISARNILE------DPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELK 156
NVP S +LE E++ A++ S T P ++I G+ IGG+ + + ++G+L
Sbjct: 42 NVPKSKALVLELDEMSNGSEIQDALEEISGQKTVPNVYINGKHIGGNSDLETLKKNGKLA 101
Query: 157 EKLK 160
E LK
Sbjct: 102 EILK 105
>pdb|1KTE|A Chain A, Crystal Structure Of Thioltransferase At 2.2 Angstrom
Resolution
Length = 105
Score = 35.4 bits (80), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 116 ELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLKGIAS 164
E++ ++ + T P++FI E IGG + +MH+ GEL +L+ + +
Sbjct: 55 EIQDYLQQLTGARTVPRVFIGKECIGGCTDLESMHKRGELLTRLQQVGA 103
>pdb|1NM3|A Chain A, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
pdb|1NM3|B Chain B, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
Length = 241
Score = 34.3 bits (77), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
Query: 55 KVDASGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILED 114
KV + LK + Q + + ++ K P C F + A ++L + + D
Sbjct: 151 KVSDADTXLKYLAPQHQVQESISIFTK-----PGCPFCAKAKQLLHDKGLSFEEIILGHD 205
Query: 115 PELKSAVKAFSHWPTFPQIFIKGEFIGGSD 144
+ S V+A S T PQ+FI G+ IGGSD
Sbjct: 206 ATIVS-VRAVSGRTTVPQVFIGGKHIGGSD 234
>pdb|2KLX|A Chain A, Solution Structure Of Glutaredoxin From Bartonella
Henselae Str. Houston
Length = 89
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 6/87 (6%)
Query: 76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFI 135
++LY + P P C + + G I A L + V+ + TFPQIFI
Sbjct: 8 IILYTR--PNCPYCKRARDLLDKKGVKYTDIDASTSLR----QEMVQRANGRNTFPQIFI 61
Query: 136 KGEFIGGSDIILNMHQSGELKEKLKGI 162
+GG D + + G+L L+ +
Sbjct: 62 GDYHVGGCDDLYALENKGKLDSLLQDV 88
>pdb|2HZE|A Chain A, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
pdb|2HZF|A Chain A, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
pdb|2HZF|B Chain B, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
Length = 114
Score = 30.4 bits (67), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 11/106 (10%)
Query: 64 KEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILE------DPEL 117
+E V+Q + N V +++K C F A+ +L ++ A I++ + EL
Sbjct: 9 EEFVQQRLANNKVTIFVK-----YTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENEL 63
Query: 118 KSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLKGIA 163
+ + + T P+IF IGG +L + L + L I
Sbjct: 64 RDYFEQITGGKTVPRIFFGKTSIGGYSDLLEIDNMDALGDILSSIG 109
>pdb|3H8Q|A Chain A, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
pdb|3H8Q|B Chain B, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
Length = 114
Score = 30.0 bits (66), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 91 FSSLAVR--VLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILN 148
FSSL V VL V AR ++ + ++ T P IF+ +GG D
Sbjct: 37 FSSLGVECNVLELDQVDDGAR-------VQEVLSEITNQKTVPNIFVNKVHVGGCDQTFQ 89
Query: 149 MHQSGELKEKLK 160
+QSG L++ L+
Sbjct: 90 AYQSGLLQKLLQ 101
>pdb|3GRX|A Chain A, Nmr Structure Of Escherichia Coli Glutaredoxin
3-Glutathione Mixed Disulfide Complex, 20 Structures
Length = 82
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 30/72 (41%)
Query: 89 CGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILN 148
C +S A +L + V I + + + S T PQIFI + IGG D +
Sbjct: 11 CPYSHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIFIDAQHIGGYDDLYA 70
Query: 149 MHQSGELKEKLK 160
+ G L LK
Sbjct: 71 LDARGGLDPLLK 82
>pdb|2JAC|A Chain A, Glutaredoxin Grx1p C30s Mutant From Yeast
Length = 110
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 67 VEQDVKENPVMLYMKGVPEFPQCGFSSL--AVRVLGAYNVPISARNILEDPELKSAVKAF 124
V+ + EN + + K + ++L ++V + + + ++ E ++++A+
Sbjct: 10 VKDLIAENEIFVASKTYCPYSHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEI 69
Query: 125 SHWPTFPQIFIKGEFIGGSD 144
+ T P I+I G+ IGG+D
Sbjct: 70 NGQRTVPNIYINGKHIGGND 89
>pdb|2P0S|A Chain A, Structural Genomics, The Crystal Structure Of A Putative
Abc Transporter Domain From Porphyromonas Gingivalis W83
pdb|2P0S|B Chain B, Structural Genomics, The Crystal Structure Of A Putative
Abc Transporter Domain From Porphyromonas Gingivalis W83
Length = 143
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 13/91 (14%)
Query: 46 THEDFRPTSKVDASGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVL------ 99
T E++R D SG+ + QD+ E+P + + G + P S+ R+L
Sbjct: 39 TAEEYRKXG-ADKSGIDAVLEIRQDLLEDPNAVAIYGYKQLP-ASVSNHISRILSDYLSD 96
Query: 100 ---GAYNVPISARNILEDPELKSAVKAFSHW 127
+YN+P + IL D +++ +V + W
Sbjct: 97 KKIASYNIP-DIKQILADSKIELSVHTYK-W 125
>pdb|3C1R|A Chain A, Crystal Structure Of Oxidized Grx1
pdb|3C1S|A Chain A, Crystal Structure Of Grx1 In Glutathionylated Form
Length = 118
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 113 EDPELKSAVKAFSHWPTFPQIFIKGEFIGGSD 144
E ++++A+ + T P I+I G+ IGG+D
Sbjct: 66 EGADIQAALYEINGQRTVPNIYINGKHIGGND 97
>pdb|3QMX|A Chain A, X-Ray Crystal Structure Of Synechocystis Sp. Pcc 6803
Glutaredoxin A
Length = 99
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 129 TFPQIFIKGEFIGGSDIILNMHQSGEL 155
+ PQIFI + IGG D I + +G+L
Sbjct: 67 SLPQIFIDDQHIGGCDDIYALDGAGKL 93
>pdb|1FOV|A Chain A, Glutaredoxin 3 From Escherichia Coli In The Fully Oxidized
Form
Length = 82
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 129 TFPQIFIKGEFIGGSDIILNMHQSGELKEKLK 160
T PQIFI + IGG D + + G L LK
Sbjct: 51 TVPQIFIDAQHIGGYDDLYALDARGGLDPLLK 82
>pdb|3L4N|A Chain A, Crystal Structure Of Yeast Monothiol Glutaredoxin Grx6
Length = 127
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 116 ELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLK 160
EL+ +K + T P + + G GG++ I +H G+L E L+
Sbjct: 57 ELQEYIKLVTGRGTVPNLLVNGVSRGGNEEIKKLHTQGKLLESLQ 101
>pdb|2JAD|A Chain A, Yellow Fluorescent Protein - Glutaredoxin Fusion Protein
Length = 362
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 67 VEQDVKENPVMLYMKGVPEFPQCGFSSL--AVRVLGAYNVPISARNILEDPELKSAVKAF 124
V+ + EN + + K + ++L ++V + + + ++ E ++++A+
Sbjct: 254 VKDLIAENEIFVASKTYCPYSHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEI 313
Query: 125 SHWPTFPQIFIKGEFIGGSD 144
+ T P I+I G+ IGG+D
Sbjct: 314 NGQRTVPNIYINGKHIGGND 333
>pdb|1VZY|A Chain A, Crystal Structure Of The Bacillus Subtilis Hsp33
pdb|1VZY|B Chain B, Crystal Structure Of The Bacillus Subtilis Hsp33
Length = 291
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 5/93 (5%)
Query: 52 PTSKVDASGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNI 111
P SK+ GL+ +E++E+ + E P +L V C +LG + + I
Sbjct: 200 PISKLIQKGLTPEEILEEVLGEKPEILETMPVRFHCPCSKERFETAILG-----LGKKEI 254
Query: 112 LEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSD 144
+ E +A H+ +F K E G D
Sbjct: 255 QDMIEEDGQAEAVCHFCNEKYLFTKEELEGLRD 287
>pdb|2HZE|B Chain B, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
Length = 114
Score = 26.9 bits (58), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 3/102 (2%)
Query: 64 KEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVL--GAYNVPISARNILEDPELKSAV 121
+E V+Q + N V +++K F + L GAY + + + + EL+
Sbjct: 9 EEFVQQRLANNKVTIFVKYTXPFCRNALDILNKFSFKRGAYEI-VDIKEFKPENELRDYF 67
Query: 122 KAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLKGIA 163
+ + T P+IF IGG +L + L + L I
Sbjct: 68 EQITGGKTVPRIFFGKTSIGGYSDLLEIDNMDALGDILSSIG 109
>pdb|3TC8|A Chain A, Crystal Structure Of A Hypothetical Zn-Dependent
Exopeptidase (Bdi_3547) From Parabacteroides Distasonis
Atcc 8503 At 1.06 A Resolution
pdb|3TC8|B Chain B, Crystal Structure Of A Hypothetical Zn-Dependent
Exopeptidase (Bdi_3547) From Parabacteroides Distasonis
Atcc 8503 At 1.06 A Resolution
Length = 309
Score = 26.6 bits (57), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 98 VLGAYN-VPISARNILE--DPELKSAVKAFSHWPTFP 131
+L AY+ + ARNI+ DPE V F+HW + P
Sbjct: 71 ILTAYDGTKLEARNIIGSFDPENSKRVLLFAHWDSRP 107
>pdb|4FUU|A Chain A, Crystal Structure Of A Leucine Aminopeptidase Precursor
(Bt_2548) From Bacteroides Thetaiotaomicron Vpi-5482 At
1.30 A Resolution
Length = 309
Score = 26.2 bits (56), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 106 ISARNILED--PELKSAVKAFSHWPTFP 131
+ ARNI+ PE K + F+HW T P
Sbjct: 80 LKARNIIGSYKPESKKRIALFAHWDTRP 107
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,014,974
Number of Sequences: 62578
Number of extensions: 202793
Number of successful extensions: 336
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 297
Number of HSP's gapped (non-prelim): 44
length of query: 169
length of database: 14,973,337
effective HSP length: 92
effective length of query: 77
effective length of database: 9,216,161
effective search space: 709644397
effective search space used: 709644397
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (23.1 bits)