Query 030914
Match_columns 169
No_of_seqs 227 out of 1638
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 06:29:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030914.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030914hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0278 Glutaredoxin-related p 100.0 1.5E-36 3.3E-41 209.1 11.1 101 62-162 3-104 (105)
2 PRK10824 glutaredoxin-4; Provi 100.0 1.4E-35 3E-40 213.1 12.5 107 62-168 3-109 (115)
3 TIGR00365 monothiol glutaredox 100.0 2.3E-31 5.1E-36 186.3 12.1 96 64-159 2-97 (97)
4 KOG0911 Glutaredoxin-related p 100.0 1.4E-30 3.1E-35 203.4 10.9 100 63-162 128-227 (227)
5 PTZ00062 glutaredoxin; Provisi 100.0 7.9E-30 1.7E-34 200.0 12.4 101 61-161 100-200 (204)
6 cd03028 GRX_PICOT_like Glutare 100.0 1.3E-29 2.9E-34 175.0 10.0 90 67-156 1-90 (90)
7 TIGR02189 GlrX-like_plant Glut 100.0 6.4E-29 1.4E-33 174.6 10.0 93 68-165 2-97 (99)
8 PHA03050 glutaredoxin; Provisi 100.0 2.1E-28 4.6E-33 174.4 12.2 97 64-165 3-105 (108)
9 KOG1752 Glutaredoxin and relat 99.9 4.6E-25 1E-29 155.7 11.9 98 63-165 3-103 (104)
10 PRK10638 glutaredoxin 3; Provi 99.9 1.2E-23 2.7E-28 142.8 10.6 82 74-160 2-83 (83)
11 cd03031 GRX_GRX_like Glutaredo 99.9 2E-23 4.2E-28 156.1 11.6 90 75-164 1-95 (147)
12 TIGR02181 GRX_bact Glutaredoxi 99.9 1.7E-23 3.6E-28 140.5 9.4 79 76-159 1-79 (79)
13 cd03418 GRX_GRXb_1_3_like Glut 99.9 1.4E-21 3.1E-26 129.3 9.9 74 75-153 1-75 (75)
14 cd03027 GRX_DEP Glutaredoxin ( 99.9 1.6E-21 3.4E-26 129.1 9.0 72 75-151 2-73 (73)
15 COG0278 Glutaredoxin-related p 99.9 7.7E-23 1.7E-27 141.2 2.4 76 6-101 17-94 (105)
16 COG0695 GrxC Glutaredoxin and 99.9 3.4E-21 7.3E-26 130.4 8.9 76 75-155 2-79 (80)
17 TIGR02180 GRX_euk Glutaredoxin 99.8 7.1E-21 1.5E-25 128.1 9.3 79 76-159 1-84 (84)
18 cd03419 GRX_GRXh_1_2_like Glut 99.8 9.1E-21 2E-25 127.3 8.3 78 75-157 1-81 (82)
19 cd03030 GRX_SH3BGR Glutaredoxi 99.8 1.1E-20 2.4E-25 131.0 8.6 85 76-160 2-91 (92)
20 TIGR02190 GlrX-dom Glutaredoxi 99.8 4.6E-20 1E-24 124.1 8.7 74 71-150 5-78 (79)
21 cd03029 GRX_hybridPRX5 Glutare 99.8 6.1E-20 1.3E-24 121.1 8.9 70 75-150 2-71 (72)
22 TIGR02183 GRXA Glutaredoxin, G 99.8 3.9E-19 8.5E-24 121.6 9.4 73 76-153 2-81 (86)
23 PRK11200 grxA glutaredoxin 1; 99.8 4.6E-19 1E-23 120.6 9.4 73 75-152 2-81 (85)
24 cd02066 GRX_family Glutaredoxi 99.8 1.3E-18 2.8E-23 112.6 9.5 72 75-151 1-72 (72)
25 PF00462 Glutaredoxin: Glutare 99.7 5.4E-18 1.2E-22 108.0 7.2 60 76-140 1-60 (60)
26 PRK12759 bifunctional gluaredo 99.7 8.7E-18 1.9E-22 144.4 10.4 85 74-165 2-94 (410)
27 KOG0911 Glutaredoxin-related p 99.7 2.7E-18 5.8E-23 134.6 1.8 77 6-102 141-218 (227)
28 TIGR02194 GlrX_NrdH Glutaredox 99.6 6.1E-16 1.3E-20 102.1 7.5 64 76-145 1-65 (72)
29 PRK10329 glutaredoxin-like pro 99.6 1.9E-15 4.1E-20 102.3 8.3 64 75-144 2-65 (81)
30 KOG2824 Glutaredoxin-related p 99.6 1.7E-15 3.7E-20 121.9 7.7 91 73-163 130-225 (281)
31 PF04908 SH3BGR: SH3-binding, 99.5 8.6E-14 1.9E-18 97.5 7.6 86 75-160 2-97 (99)
32 TIGR02196 GlrX_YruB Glutaredox 99.4 1.1E-12 2.5E-17 85.0 8.3 66 75-145 1-66 (74)
33 cd02976 NrdH NrdH-redoxin (Nrd 99.4 3.3E-12 7.2E-17 82.7 8.5 66 75-145 1-66 (73)
34 TIGR02200 GlrX_actino Glutared 99.3 2.5E-11 5.5E-16 79.8 8.2 64 75-143 1-66 (77)
35 cd02973 TRX_GRX_like Thioredox 99.1 1.9E-10 4.1E-15 74.2 6.3 58 75-141 2-64 (67)
36 PRK10824 glutaredoxin-4; Provi 99.1 2.2E-11 4.8E-16 87.6 0.6 55 6-60 17-72 (115)
37 cd03041 GST_N_2GST_N GST_N fam 99.0 5.6E-09 1.2E-13 69.4 9.1 70 76-150 2-73 (77)
38 PTZ00062 glutaredoxin; Provisi 98.9 1.7E-10 3.6E-15 90.8 0.6 54 6-59 115-169 (204)
39 cd00570 GST_N_family Glutathio 98.9 1.1E-08 2.4E-13 64.7 7.1 68 77-149 2-69 (71)
40 cd03040 GST_N_mPGES2 GST_N fam 98.8 3.2E-08 6.8E-13 65.4 8.7 68 75-150 1-72 (77)
41 cd03037 GST_N_GRX2 GST_N famil 98.8 3.7E-08 8E-13 64.1 8.1 67 77-150 2-69 (71)
42 TIGR00365 monothiol glutaredox 98.6 6.6E-09 1.4E-13 72.5 0.6 51 6-56 14-65 (97)
43 cd03036 ArsC_like Arsenate Red 98.6 3.5E-08 7.5E-13 70.4 4.3 45 76-125 1-45 (111)
44 cd03026 AhpF_NTD_C TRX-GRX-lik 98.6 1.7E-07 3.6E-12 64.4 6.5 70 63-141 3-77 (89)
45 cd03055 GST_N_Omega GST_N fami 98.6 4.9E-07 1.1E-11 61.7 7.9 70 74-149 17-87 (89)
46 cd03059 GST_N_SspA GST_N famil 98.5 5.1E-07 1.1E-11 58.6 7.6 68 76-149 1-68 (73)
47 cd02977 ArsC_family Arsenate R 98.5 9.8E-08 2.1E-12 67.1 4.2 46 76-126 1-46 (105)
48 cd03060 GST_N_Omega_like GST_N 98.5 5.2E-07 1.1E-11 58.7 7.3 66 77-148 2-68 (71)
49 cd03028 GRX_PICOT_like Glutare 98.5 2.4E-08 5.3E-13 68.5 0.5 43 5-47 9-52 (90)
50 cd03045 GST_N_Delta_Epsilon GS 98.5 8.5E-07 1.8E-11 57.8 7.6 68 77-149 2-71 (74)
51 PF13417 GST_N_3: Glutathione 98.5 5.2E-07 1.1E-11 59.4 6.0 67 78-150 1-67 (75)
52 PRK01655 spxA transcriptional 98.5 3.7E-07 8E-12 67.1 5.6 42 76-122 2-43 (131)
53 cd03051 GST_N_GTT2_like GST_N 98.4 1.1E-06 2.3E-11 56.9 6.8 67 77-148 2-71 (74)
54 TIGR00411 redox_disulf_1 small 98.4 1.5E-06 3.3E-11 57.4 7.7 55 75-138 2-62 (82)
55 cd03056 GST_N_4 GST_N family, 98.4 1.8E-06 3.9E-11 55.8 7.7 67 77-148 2-70 (73)
56 PF05768 DUF836: Glutaredoxin- 98.3 3.6E-06 7.7E-11 56.6 7.8 53 75-137 1-57 (81)
57 TIGR01617 arsC_related transcr 98.3 1.2E-06 2.7E-11 62.8 5.6 44 76-124 1-44 (117)
58 KOG4023 Uncharacterized conser 98.3 1.8E-06 3.9E-11 59.9 5.8 89 75-163 3-100 (108)
59 cd03032 ArsC_Spx Arsenate Redu 98.3 1.5E-06 3.4E-11 62.2 5.6 44 76-124 2-45 (115)
60 PRK12559 transcriptional regul 98.2 2.2E-06 4.8E-11 63.0 4.8 35 76-115 2-36 (131)
61 cd02975 PfPDO_like_N Pyrococcu 98.1 1.1E-05 2.3E-10 57.5 7.2 61 67-135 16-81 (113)
62 PRK13344 spxA transcriptional 98.1 3.8E-06 8.1E-11 61.8 4.8 35 76-115 2-36 (132)
63 cd03035 ArsC_Yffb Arsenate Red 98.1 3.9E-06 8.4E-11 59.4 4.3 43 76-123 1-43 (105)
64 TIGR00412 redox_disulf_2 small 98.1 1.4E-05 3E-10 53.0 6.6 49 87-140 8-60 (76)
65 PHA02125 thioredoxin-like prot 98.1 1.3E-05 2.8E-10 52.9 6.5 56 76-141 2-57 (75)
66 KOG3029 Glutathione S-transfer 98.1 6.3E-06 1.4E-10 67.4 5.6 60 75-142 90-149 (370)
67 cd03061 GST_N_CLIC GST_N famil 98.1 4.1E-05 8.8E-10 52.9 8.6 75 75-150 5-82 (91)
68 cd03054 GST_N_Metaxin GST_N fa 98.1 3.1E-05 6.8E-10 50.3 7.7 56 87-150 14-69 (72)
69 cd03033 ArsC_15kD Arsenate Red 98.0 7.2E-06 1.6E-10 58.8 4.6 37 75-116 1-37 (113)
70 cd03053 GST_N_Phi GST_N family 98.0 5E-05 1.1E-09 49.6 7.8 70 76-150 2-73 (76)
71 cd03058 GST_N_Tau GST_N family 98.0 6.2E-05 1.3E-09 49.1 7.7 67 77-149 2-69 (74)
72 cd03052 GST_N_GDAP1 GST_N fami 98.0 5.3E-05 1.1E-09 49.7 7.3 69 76-149 1-71 (73)
73 cd03076 GST_N_Pi GST_N family, 97.9 0.00012 2.6E-09 47.8 8.2 69 76-150 2-70 (73)
74 TIGR01295 PedC_BrcD bacterioci 97.9 0.00012 2.7E-09 52.9 8.8 73 66-143 15-106 (122)
75 PRK15317 alkyl hydroperoxide r 97.9 4E-05 8.7E-10 67.8 7.0 74 59-141 103-181 (517)
76 cd02953 DsbDgamma DsbD gamma f 97.9 8.4E-05 1.8E-09 51.5 7.2 66 66-135 3-78 (104)
77 TIGR03140 AhpF alkyl hydropero 97.8 4.8E-05 1E-09 67.4 7.1 73 60-141 105-182 (515)
78 PHA02278 thioredoxin-like prot 97.8 0.00017 3.8E-09 50.7 8.4 66 72-141 13-86 (103)
79 cd03042 GST_N_Zeta GST_N famil 97.8 0.00012 2.6E-09 47.1 7.1 67 77-148 2-70 (73)
80 cd03039 GST_N_Sigma_like GST_N 97.8 0.00016 3.5E-09 46.8 7.4 68 77-149 2-69 (72)
81 cd02949 TRX_NTR TRX domain, no 97.8 0.00014 3E-09 50.0 7.3 59 75-141 15-81 (97)
82 cd03080 GST_N_Metaxin_like GST 97.7 0.00023 5.1E-09 46.6 7.3 55 88-150 16-70 (75)
83 TIGR02187 GlrX_arch Glutaredox 97.7 0.00014 3.1E-09 57.3 7.3 55 75-138 136-195 (215)
84 cd03049 GST_N_3 GST_N family, 97.7 0.00019 4.2E-09 46.5 6.7 66 77-148 2-70 (73)
85 TIGR02182 GRXB Glutaredoxin, G 97.7 0.00018 3.8E-09 56.4 7.5 67 78-151 2-69 (209)
86 cd03048 GST_N_Ure2p_like GST_N 97.6 0.00039 8.5E-09 46.0 7.7 68 76-149 2-74 (81)
87 PRK10387 glutaredoxin 2; Provi 97.6 0.00031 6.7E-09 54.4 8.0 68 76-150 1-69 (210)
88 PF13192 Thioredoxin_3: Thiore 97.6 0.00019 4.1E-09 47.5 5.8 48 87-139 8-59 (76)
89 COG1393 ArsC Arsenate reductas 97.6 9.5E-05 2.1E-09 53.3 4.4 44 75-123 2-45 (117)
90 cd01659 TRX_superfamily Thiore 97.6 0.00037 8.1E-09 41.6 6.2 57 76-138 1-62 (69)
91 cd03038 GST_N_etherase_LigE GS 97.5 0.00036 7.9E-09 46.6 6.4 64 86-150 13-79 (84)
92 TIGR03143 AhpF_homolog putativ 97.5 0.00028 6.2E-09 63.1 7.6 71 60-139 464-539 (555)
93 cd02947 TRX_family TRX family; 97.5 0.00064 1.4E-08 44.5 7.6 59 74-140 11-76 (93)
94 PF13409 GST_N_2: Glutathione 97.5 0.00015 3.2E-09 47.1 4.1 64 88-151 1-68 (70)
95 cd02989 Phd_like_TxnDC9 Phosdu 97.5 0.0013 2.8E-08 46.8 9.3 63 72-142 21-90 (113)
96 TIGR01616 nitro_assoc nitrogen 97.5 0.00016 3.6E-09 52.7 4.7 36 75-115 2-37 (126)
97 cd03050 GST_N_Theta GST_N fami 97.5 0.00085 1.8E-08 43.8 7.6 68 77-149 2-71 (76)
98 PRK10026 arsenate reductase; P 97.5 0.00018 4E-09 53.5 4.7 37 74-115 2-38 (141)
99 PRK10853 putative reductase; P 97.5 0.00017 3.7E-09 52.0 4.3 36 76-116 2-37 (118)
100 cd03034 ArsC_ArsC Arsenate Red 97.5 0.0002 4.3E-09 51.0 4.5 35 76-115 1-35 (112)
101 TIGR00014 arsC arsenate reduct 97.5 0.0002 4.4E-09 51.2 4.5 36 76-116 1-36 (114)
102 cd02985 TRX_CDSP32 TRX family, 97.4 0.00098 2.1E-08 46.4 7.6 63 74-141 16-85 (103)
103 cd03044 GST_N_EF1Bgamma GST_N 97.4 0.001 2.2E-08 43.5 6.9 67 78-149 3-71 (75)
104 cd02954 DIM1 Dim1 family; Dim1 97.4 0.00073 1.6E-08 48.5 6.4 58 75-141 16-82 (114)
105 TIGR00862 O-ClC intracellular 97.3 0.0013 2.8E-08 52.9 8.4 75 76-151 3-80 (236)
106 PF00085 Thioredoxin: Thioredo 97.3 0.0009 1.9E-08 45.4 6.4 70 62-141 8-85 (103)
107 COG4545 Glutaredoxin-related p 97.3 0.0012 2.5E-08 43.8 6.4 62 77-143 5-79 (85)
108 PTZ00051 thioredoxin; Provisio 97.3 0.0015 3.2E-08 44.4 7.2 70 65-142 9-86 (98)
109 COG3118 Thioredoxin domain-con 97.3 0.00081 1.8E-08 55.6 6.5 77 60-144 30-114 (304)
110 cd03047 GST_N_2 GST_N family, 97.3 0.0023 5.1E-08 41.4 7.5 67 77-148 2-70 (73)
111 PRK09481 sspA stringent starva 97.2 0.0015 3.2E-08 51.0 7.5 68 75-148 10-77 (211)
112 cd02951 SoxW SoxW family; SoxW 97.2 0.0013 2.7E-08 47.1 6.5 69 65-137 4-93 (125)
113 cd02994 PDI_a_TMX PDIa family, 97.2 0.0016 3.5E-08 44.6 6.5 62 68-138 12-82 (101)
114 cd02957 Phd_like Phosducin (Ph 97.2 0.0045 9.7E-08 43.7 8.6 67 74-149 25-98 (113)
115 PRK09381 trxA thioredoxin; Pro 97.1 0.0018 3.9E-08 45.0 6.3 62 73-142 21-90 (109)
116 cd02956 ybbN ybbN protein fami 97.1 0.0028 6.1E-08 42.9 7.0 59 74-140 13-79 (96)
117 TIGR01068 thioredoxin thioredo 97.1 0.0089 1.9E-07 40.2 9.5 59 75-141 16-82 (101)
118 cd03043 GST_N_1 GST_N family, 97.1 0.0033 7.2E-08 40.9 6.9 62 87-148 8-70 (73)
119 TIGR02187 GlrX_arch Glutaredox 97.1 0.0027 5.8E-08 50.0 7.5 63 72-140 19-90 (215)
120 cd02963 TRX_DnaJ TRX domain, D 97.1 0.0058 1.3E-07 43.0 8.4 61 73-141 24-93 (111)
121 cd03057 GST_N_Beta GST_N famil 97.0 0.0046 1E-07 40.3 7.0 67 77-149 2-71 (77)
122 cd03046 GST_N_GTT1_like GST_N 97.0 0.0057 1.2E-07 39.5 7.1 61 90-150 9-71 (76)
123 PRK10996 thioredoxin 2; Provis 97.0 0.0053 1.1E-07 45.2 7.7 67 66-140 44-119 (139)
124 cd02962 TMX2 TMX2 family; comp 96.9 0.0038 8.3E-08 46.9 7.0 62 76-142 51-123 (152)
125 cd02996 PDI_a_ERp44 PDIa famil 96.9 0.0044 9.6E-08 43.1 6.7 48 87-138 28-89 (108)
126 cd02948 TRX_NDPK TRX domain, T 96.9 0.0087 1.9E-07 41.4 8.0 59 73-140 17-84 (102)
127 PLN02817 glutathione dehydroge 96.9 0.0023 4.9E-08 52.3 5.6 61 88-149 72-132 (265)
128 PF03960 ArsC: ArsC family; I 96.9 0.0022 4.8E-08 45.3 4.8 36 87-122 4-39 (110)
129 cd02987 Phd_like_Phd Phosducin 96.8 0.0049 1.1E-07 47.3 6.9 79 75-162 85-174 (175)
130 KOG0910 Thioredoxin-like prote 96.8 0.003 6.5E-08 47.3 5.5 70 62-140 49-128 (150)
131 PF14595 Thioredoxin_9: Thiore 96.8 0.00038 8.2E-09 51.0 0.3 69 61-135 30-103 (129)
132 cd02965 HyaE HyaE family; HyaE 96.8 0.008 1.7E-07 42.9 7.1 62 74-143 28-99 (111)
133 cd02984 TRX_PICOT TRX domain, 96.8 0.0075 1.6E-07 40.7 6.7 50 87-140 24-81 (97)
134 cd02950 TxlA TRX-like protein 96.7 0.0061 1.3E-07 45.1 6.6 67 68-140 14-90 (142)
135 cd03005 PDI_a_ERp46 PDIa famil 96.7 0.007 1.5E-07 41.1 6.5 65 67-139 10-85 (102)
136 cd03000 PDI_a_TMX3 PDIa family 96.7 0.006 1.3E-07 42.1 6.1 65 63-135 5-78 (104)
137 cd02959 ERp19 Endoplasmic reti 96.6 0.0091 2E-07 42.7 6.7 74 62-141 7-91 (117)
138 cd03003 PDI_a_ERdj5_N PDIa fam 96.6 0.0079 1.7E-07 41.2 6.2 48 87-138 28-83 (101)
139 cd03036 ArsC_like Arsenate Red 96.6 0.011 2.4E-07 41.9 6.9 31 16-46 6-37 (111)
140 cd02955 SSP411 TRX domain, SSP 96.6 0.017 3.7E-07 41.9 8.0 74 65-142 6-96 (124)
141 cd02993 PDI_a_APS_reductase PD 96.6 0.0079 1.7E-07 42.1 6.0 46 87-134 31-83 (109)
142 PRK15113 glutathione S-transfe 96.6 0.013 2.9E-07 45.7 7.8 69 75-146 5-75 (214)
143 cd03035 ArsC_Yffb Arsenate Red 96.5 0.0068 1.5E-07 42.7 5.4 93 16-144 6-104 (105)
144 cd02961 PDI_a_family Protein D 96.5 0.017 3.8E-07 38.3 7.2 62 66-135 7-77 (101)
145 PLN02378 glutathione S-transfe 96.5 0.011 2.4E-07 46.2 7.1 62 87-149 18-79 (213)
146 cd03001 PDI_a_P5 PDIa family, 96.5 0.022 4.7E-07 38.7 7.6 52 76-135 21-78 (103)
147 cd03006 PDI_a_EFP1_N PDIa fami 96.4 0.0052 1.1E-07 43.9 4.3 49 87-138 39-95 (113)
148 PRK10877 protein disulfide iso 96.4 0.014 3E-07 46.8 7.2 28 76-108 111-141 (232)
149 cd02999 PDI_a_ERp44_like PDIa 96.4 0.02 4.3E-07 39.6 6.9 45 87-135 28-78 (100)
150 PF13098 Thioredoxin_2: Thiore 96.4 0.016 3.5E-07 40.2 6.5 64 76-144 9-103 (112)
151 PLN02473 glutathione S-transfe 96.4 0.018 4E-07 44.6 7.5 69 76-149 3-73 (214)
152 KOG4244 Failed axon connection 96.3 0.013 2.8E-07 47.7 6.2 73 68-148 38-112 (281)
153 TIGR01126 pdi_dom protein disu 96.3 0.012 2.7E-07 39.7 5.4 51 76-135 17-75 (102)
154 cd03004 PDI_a_ERdj5_C PDIa fam 96.2 0.014 3E-07 40.1 5.5 47 87-137 29-83 (104)
155 cd02952 TRP14_like Human TRX-r 96.2 0.021 4.6E-07 41.2 6.5 50 86-135 37-96 (119)
156 KOG0406 Glutathione S-transfer 96.2 0.025 5.3E-07 45.4 7.3 70 74-149 8-78 (231)
157 cd02998 PDI_a_ERp38 PDIa famil 96.0 0.025 5.4E-07 38.3 6.0 45 87-135 28-81 (105)
158 cd03065 PDI_b_Calsequestrin_N 96.0 0.054 1.2E-06 39.1 7.9 69 65-141 17-101 (120)
159 TIGR01262 maiA maleylacetoacet 96.0 0.021 4.6E-07 44.0 6.1 62 87-148 6-70 (210)
160 PRK01655 spxA transcriptional 96.0 0.022 4.8E-07 41.6 5.7 96 16-145 7-107 (131)
161 PF13728 TraF: F plasmid trans 95.9 0.029 6.3E-07 44.5 6.4 69 62-135 110-189 (215)
162 cd03020 DsbA_DsbC_DsbG DsbA fa 95.8 0.058 1.3E-06 41.7 7.7 31 74-109 79-111 (197)
163 cd03002 PDI_a_MPD1_like PDI fa 95.8 0.027 5.9E-07 38.7 5.2 47 87-135 28-80 (109)
164 KOG0907 Thioredoxin [Posttrans 95.7 0.089 1.9E-06 37.1 7.8 71 66-144 13-95 (106)
165 KOG1422 Intracellular Cl- chan 95.7 0.051 1.1E-06 42.9 6.9 60 87-149 19-80 (221)
166 cd02988 Phd_like_VIAF Phosduci 95.6 0.063 1.4E-06 41.8 7.4 69 62-141 88-166 (192)
167 cd02986 DLP Dim1 family, Dim1- 95.6 0.026 5.7E-07 40.5 4.8 69 64-140 6-81 (114)
168 TIGR01616 nitro_assoc nitrogen 95.6 0.053 1.2E-06 39.5 6.5 94 16-145 8-106 (126)
169 cd02997 PDI_a_PDIR PDIa family 95.6 0.056 1.2E-06 36.6 6.3 50 87-140 27-88 (104)
170 cd03032 ArsC_Spx Arsenate Redu 95.5 0.016 3.4E-07 41.3 3.2 96 16-145 7-107 (115)
171 TIGR02189 GlrX-like_plant Glut 95.5 0.0055 1.2E-07 42.6 0.8 73 5-101 9-84 (99)
172 PF13899 Thioredoxin_7: Thiore 95.3 0.082 1.8E-06 34.9 6.2 34 62-99 5-39 (82)
173 TIGR02740 TraF-like TraF-like 95.3 0.064 1.4E-06 44.0 6.6 65 66-135 160-235 (271)
174 cd03079 GST_N_Metaxin2 GST_N f 95.2 0.13 2.7E-06 34.0 6.7 57 87-150 15-71 (74)
175 cd02992 PDI_a_QSOX PDIa family 95.2 0.081 1.8E-06 37.4 6.2 55 75-135 21-84 (114)
176 cd03077 GST_N_Alpha GST_N fami 95.2 0.23 5E-06 32.6 7.9 66 77-148 3-70 (79)
177 cd02977 ArsC_family Arsenate R 95.1 0.03 6.6E-07 39.0 3.8 31 16-46 6-37 (105)
178 PLN00410 U5 snRNP protein, DIM 95.1 0.057 1.2E-06 40.2 5.4 35 87-121 33-73 (142)
179 COG1393 ArsC Arsenate reductas 95.1 0.089 1.9E-06 37.8 6.2 92 16-141 8-105 (117)
180 PRK13728 conjugal transfer pro 95.1 0.076 1.6E-06 41.1 6.2 55 76-135 73-142 (181)
181 cd02972 DsbA_family DsbA famil 95.1 0.065 1.4E-06 35.2 5.2 31 76-111 1-37 (98)
182 COG0625 Gst Glutathione S-tran 95.1 0.089 1.9E-06 40.7 6.6 67 77-148 2-70 (211)
183 COG2999 GrxB Glutaredoxin 2 [P 95.1 0.031 6.7E-07 43.2 3.8 61 87-149 7-69 (215)
184 PRK00293 dipZ thiol:disulfide 95.0 0.13 2.7E-06 46.6 8.2 71 61-135 461-540 (571)
185 TIGR00014 arsC arsenate reduct 94.9 0.15 3.3E-06 36.3 6.8 96 16-144 6-106 (114)
186 cd03033 ArsC_15kD Arsenate Red 94.8 0.11 2.5E-06 37.0 6.0 31 16-46 7-38 (113)
187 cd03034 ArsC_ArsC Arsenate Red 94.6 0.19 4E-06 35.6 6.7 95 16-144 6-105 (112)
188 PTZ00443 Thioredoxin domain-co 94.6 0.079 1.7E-06 42.3 5.3 50 87-140 62-119 (224)
189 COG3019 Predicted metal-bindin 94.5 0.21 4.5E-06 37.1 6.8 77 73-154 25-104 (149)
190 TIGR00424 APS_reduc 5'-adenyly 94.4 0.15 3.3E-06 44.9 7.1 50 87-138 381-439 (463)
191 cd02995 PDI_a_PDI_a'_C PDIa fa 94.4 0.097 2.1E-06 35.3 4.8 53 74-135 19-79 (104)
192 PRK13344 spxA transcriptional 94.4 0.13 2.9E-06 37.6 5.7 31 16-46 7-38 (132)
193 PRK12559 transcriptional regul 94.4 0.11 2.3E-06 38.1 5.1 31 16-46 7-38 (131)
194 PRK10357 putative glutathione 94.3 0.17 3.8E-06 38.7 6.6 62 77-144 2-64 (202)
195 cd03078 GST_N_Metaxin1_like GS 94.3 0.48 1E-05 30.9 7.7 56 88-151 15-70 (73)
196 TIGR02739 TraF type-F conjugat 94.2 0.18 3.8E-06 41.2 6.6 68 63-135 141-219 (256)
197 PLN02395 glutathione S-transfe 94.2 0.25 5.3E-06 38.2 7.3 68 76-149 3-72 (215)
198 cd02964 TryX_like_family Trypa 94.2 0.28 6.1E-06 35.2 7.1 64 73-140 17-113 (132)
199 cd03009 TryX_like_TryX_NRX Try 94.2 0.27 5.8E-06 35.0 6.9 65 72-140 17-113 (131)
200 cd03027 GRX_DEP Glutaredoxin ( 94.2 0.018 3.9E-07 37.3 0.6 31 17-47 9-40 (73)
201 TIGR02661 MauD methylamine deh 94.1 0.29 6.3E-06 37.7 7.5 65 72-140 73-160 (189)
202 cd02958 UAS UAS family; UAS is 94.1 0.19 4.2E-06 35.2 5.9 68 62-135 5-82 (114)
203 PRK10026 arsenate reductase; P 94.1 0.25 5.4E-06 36.7 6.6 101 16-150 9-116 (141)
204 PRK10853 putative reductase; P 94.1 0.21 4.5E-06 35.9 6.0 30 16-45 7-37 (118)
205 PF00462 Glutaredoxin: Glutare 94.1 0.0046 1E-07 38.5 -2.3 34 17-50 7-41 (60)
206 TIGR01617 arsC_related transcr 94.0 0.13 2.9E-06 36.5 5.0 31 16-46 6-37 (117)
207 PRK13703 conjugal pilus assemb 94.0 0.21 4.6E-06 40.5 6.7 68 63-135 134-212 (248)
208 PF11009 DUF2847: Protein of u 93.9 0.36 7.8E-06 34.1 6.9 66 72-141 18-92 (105)
209 PRK13972 GSH-dependent disulfi 93.9 0.37 8E-06 37.4 7.7 54 76-135 2-57 (215)
210 TIGR01130 ER_PDI_fam protein d 93.9 0.24 5.2E-06 42.5 7.2 65 66-139 10-87 (462)
211 PTZ00102 disulphide isomerase; 93.5 0.3 6.5E-06 42.4 7.1 65 66-138 41-117 (477)
212 PLN02309 5'-adenylylsulfate re 93.3 0.24 5.2E-06 43.7 6.3 46 87-135 375-428 (457)
213 TIGR02181 GRX_bact Glutaredoxi 93.3 0.028 6.2E-07 36.7 0.3 30 16-45 6-36 (79)
214 PRK10638 glutaredoxin 3; Provi 93.2 0.033 7E-07 37.1 0.5 30 16-45 9-39 (83)
215 PF06953 ArsD: Arsenical resis 93.0 0.42 9.1E-06 34.7 6.1 54 94-148 31-93 (123)
216 TIGR02738 TrbB type-F conjugat 92.9 0.45 9.8E-06 35.7 6.4 59 72-135 50-124 (153)
217 PRK11752 putative S-transferas 92.7 0.58 1.3E-05 37.9 7.3 73 70-148 39-123 (264)
218 cd03008 TryX_like_RdCVF Trypar 92.7 0.4 8.6E-06 35.8 5.9 27 71-101 23-49 (146)
219 smart00594 UAS UAS domain. 92.4 1.5 3.2E-05 31.2 8.4 69 61-135 14-92 (122)
220 KOG3425 Uncharacterized conser 92.4 0.25 5.4E-06 35.8 4.1 57 61-117 13-79 (128)
221 PF07315 DUF1462: Protein of u 92.3 1.1 2.4E-05 30.7 7.1 59 92-150 18-89 (93)
222 cd03418 GRX_GRXb_1_3_like Glut 92.3 0.046 9.9E-07 35.1 0.3 28 17-44 8-36 (75)
223 cd02982 PDI_b'_family Protein 92.1 0.38 8.3E-06 32.5 4.9 51 76-135 16-74 (103)
224 PF02798 GST_N: Glutathione S- 92.1 0.98 2.1E-05 29.3 6.6 58 91-148 11-72 (76)
225 cd02066 GRX_family Glutaredoxi 92.0 0.053 1.1E-06 33.8 0.4 29 17-45 8-37 (72)
226 PF06764 DUF1223: Protein of u 91.7 1.1 2.4E-05 35.3 7.5 64 76-144 2-86 (202)
227 KOG0190 Protein disulfide isom 91.7 0.61 1.3E-05 41.5 6.7 68 64-138 32-110 (493)
228 TIGR02194 GlrX_NrdH Glutaredox 91.6 0.067 1.5E-06 34.5 0.5 30 16-45 6-36 (72)
229 TIGR02190 GlrX-dom Glutaredoxi 91.5 0.13 2.9E-06 33.8 1.9 33 6-43 10-43 (79)
230 PTZ00057 glutathione s-transfe 91.5 1.5 3.2E-05 33.8 8.1 69 75-148 4-77 (205)
231 TIGR00385 dsbE periplasmic pro 91.4 1.3 2.8E-05 33.4 7.5 39 71-113 61-102 (173)
232 COG3634 AhpF Alkyl hydroperoxi 90.9 0.49 1.1E-05 40.7 5.1 77 59-142 103-182 (520)
233 cd02967 mauD Methylamine utili 90.6 1.6 3.6E-05 29.9 6.9 25 73-101 21-45 (114)
234 PTZ00102 disulphide isomerase; 90.2 0.45 9.7E-06 41.3 4.5 54 74-135 376-437 (477)
235 cd03075 GST_N_Mu GST_N family, 90.0 2.9 6.3E-05 27.5 7.4 60 89-148 9-76 (82)
236 PRK03147 thiol-disulfide oxido 89.9 1.2 2.7E-05 32.9 6.2 64 73-140 61-152 (173)
237 PRK10542 glutathionine S-trans 89.4 1.3 2.8E-05 33.7 6.1 57 92-148 11-71 (201)
238 PF00578 AhpC-TSA: AhpC/TSA fa 89.4 1.1 2.5E-05 31.0 5.4 59 72-135 24-89 (124)
239 PRK11657 dsbG disulfide isomer 89.4 0.39 8.4E-06 38.9 3.2 32 75-111 120-155 (251)
240 cd03010 TlpA_like_DsbE TlpA-li 89.1 2.3 5E-05 29.9 6.9 36 73-112 25-64 (127)
241 PF08534 Redoxin: Redoxin; In 88.8 2.6 5.7E-05 30.3 7.1 50 71-123 26-82 (146)
242 KOG0867 Glutathione S-transfer 88.8 2 4.4E-05 34.0 6.9 69 75-148 2-72 (226)
243 cd03419 GRX_GRXh_1_2_like Glut 88.6 1.8 3.9E-05 27.9 5.6 68 16-101 7-76 (82)
244 PRK15412 thiol:disulfide inter 88.5 2.6 5.7E-05 32.1 7.2 47 72-122 67-117 (185)
245 cd02960 AGR Anterior Gradient 88.2 1 2.2E-05 33.0 4.5 33 62-98 11-44 (130)
246 PF06110 DUF953: Eukaryotic pr 88.2 0.43 9.3E-06 34.5 2.4 73 63-135 8-95 (119)
247 cd02970 PRX_like2 Peroxiredoxi 88.0 3.6 7.9E-05 29.3 7.4 54 75-134 26-86 (149)
248 cd02966 TlpA_like_family TlpA- 87.9 1.4 3.1E-05 29.2 4.9 46 74-123 20-74 (116)
249 cd03029 GRX_hybridPRX5 Glutare 87.9 0.52 1.1E-05 30.1 2.5 28 17-44 9-37 (72)
250 KOG4277 Uncharacterized conser 87.8 0.4 8.8E-06 40.2 2.4 75 57-140 27-112 (468)
251 KOG1695 Glutathione S-transfer 87.8 1.7 3.7E-05 34.3 5.8 60 88-148 11-70 (206)
252 PF13905 Thioredoxin_8: Thiore 87.7 3.3 7.2E-05 27.4 6.6 37 87-123 11-56 (95)
253 COG5494 Predicted thioredoxin/ 87.6 1.1 2.5E-05 35.6 4.6 68 74-150 11-84 (265)
254 PRK11509 hydrogenase-1 operon 87.5 8.3 0.00018 28.3 8.9 80 75-161 36-122 (132)
255 PF03960 ArsC: ArsC family; I 87.4 0.46 1E-05 33.3 2.2 101 16-145 3-104 (110)
256 PRK10329 glutaredoxin-like pro 87.1 0.54 1.2E-05 31.3 2.3 30 16-45 8-38 (81)
257 cd03007 PDI_a_ERp29_N PDIa fam 86.8 5.5 0.00012 28.5 7.5 70 66-138 10-91 (116)
258 KOG2501 Thioredoxin, nucleored 86.8 3.6 7.9E-05 31.1 6.8 41 70-114 30-77 (157)
259 cd03011 TlpA_like_ScsD_MtbDsbE 86.7 0.59 1.3E-05 32.6 2.5 24 74-101 21-44 (123)
260 COG2143 Thioredoxin-related pr 86.7 2.9 6.3E-05 31.9 6.2 74 63-141 31-130 (182)
261 cd03061 GST_N_CLIC GST_N famil 86.5 1 2.2E-05 30.9 3.5 52 6-57 6-63 (91)
262 PHA03050 glutaredoxin; Provisi 85.8 0.29 6.3E-06 34.5 0.4 26 17-42 21-50 (108)
263 COG0526 TrxA Thiol-disulfide i 85.2 2.2 4.8E-05 27.8 4.6 50 87-138 42-100 (127)
264 TIGR01130 ER_PDI_fam protein d 84.4 1.7 3.8E-05 37.1 4.7 53 73-135 364-425 (462)
265 PF03190 Thioredox_DsbH: Prote 84.0 3.2 6.9E-05 31.6 5.4 61 54-122 20-91 (163)
266 COG4837 Uncharacterized protei 84.0 5.9 0.00013 27.5 6.2 74 73-150 4-96 (106)
267 cd03023 DsbA_Com1_like DsbA fa 83.6 1.3 2.9E-05 31.7 3.1 57 93-149 86-149 (154)
268 PRK09437 bcp thioredoxin-depen 83.5 7.1 0.00015 28.4 7.1 57 72-133 29-92 (154)
269 PHA03075 glutaredoxin-like pro 83.3 1.3 2.9E-05 31.8 2.9 34 74-112 3-38 (123)
270 cd03022 DsbA_HCCA_Iso DsbA fam 81.5 2.4 5.1E-05 31.9 4.0 57 94-150 125-188 (192)
271 cd03017 PRX_BCP Peroxiredoxin 81.4 11 0.00023 26.7 7.2 55 73-132 23-84 (140)
272 cd03023 DsbA_Com1_like DsbA fa 80.9 1.2 2.7E-05 31.8 2.1 32 75-111 8-44 (154)
273 PF10568 Tom37: Outer mitochon 80.9 8.6 0.00019 25.0 5.9 53 89-149 14-70 (72)
274 PF04134 DUF393: Protein of un 80.8 5.7 0.00012 27.5 5.5 64 88-152 6-76 (114)
275 PRK11200 grxA glutaredoxin 1; 80.0 0.58 1.3E-05 31.0 0.1 29 16-44 8-42 (85)
276 PRK09979 putative rho operon l 79.7 0.79 1.7E-05 24.6 0.5 17 10-26 6-22 (33)
277 cd03018 PRX_AhpE_like Peroxire 79.0 6.7 0.00014 28.1 5.5 45 87-133 39-90 (149)
278 TIGR02196 GlrX_YruB Glutaredox 77.5 1.1 2.5E-05 27.7 0.9 30 16-45 7-37 (74)
279 PF13462 Thioredoxin_4: Thiore 77.5 4.2 9.2E-05 29.5 4.1 23 124-146 131-153 (162)
280 KOG0868 Glutathione S-transfer 77.3 7.5 0.00016 30.4 5.4 64 75-143 5-71 (217)
281 KOG4420 Uncharacterized conser 75.5 2 4.4E-05 35.3 2.0 72 76-152 27-100 (325)
282 cd02969 PRX_like1 Peroxiredoxi 75.1 24 0.00051 26.2 7.7 37 72-112 24-67 (171)
283 PTZ00056 glutathione peroxidas 75.1 13 0.00027 28.9 6.4 35 73-111 39-80 (199)
284 cd03019 DsbA_DsbA DsbA family, 74.7 2.8 6E-05 31.0 2.5 23 73-100 16-38 (178)
285 TIGR03143 AhpF_homolog putativ 74.3 9.1 0.0002 34.4 6.1 65 62-135 352-425 (555)
286 cd00340 GSH_Peroxidase Glutath 74.2 10 0.00022 27.7 5.5 56 73-134 22-92 (152)
287 KOG3171 Conserved phosducin-li 73.3 6.4 0.00014 31.6 4.3 38 128-165 210-253 (273)
288 TIGR02200 GlrX_actino Glutared 72.8 3.7 7.9E-05 25.8 2.4 28 16-43 7-35 (77)
289 COG0695 GrxC Glutaredoxin and 72.7 4 8.6E-05 27.0 2.6 28 17-44 9-37 (80)
290 PF13462 Thioredoxin_4: Thiore 72.2 3.8 8.1E-05 29.8 2.7 37 74-115 14-58 (162)
291 cd02971 PRX_family Peroxiredox 71.7 15 0.00032 25.8 5.7 58 72-134 21-86 (140)
292 PF01323 DSBA: DSBA-like thior 71.6 2.7 5.8E-05 31.6 1.8 55 95-149 126-188 (193)
293 cd05295 MDH_like Malate dehydr 71.4 11 0.00024 33.3 5.8 66 87-152 2-83 (452)
294 TIGR01162 purE phosphoribosyla 71.3 17 0.00036 27.6 5.9 72 77-151 2-100 (156)
295 PF02114 Phosducin: Phosducin; 69.8 15 0.00032 30.1 5.8 94 64-166 134-241 (265)
296 cd03015 PRX_Typ2cys Peroxiredo 69.5 17 0.00037 27.1 5.8 37 73-113 29-73 (173)
297 cd02976 NrdH NrdH-redoxin (Nrd 69.2 2.5 5.4E-05 26.0 1.0 28 16-43 7-35 (73)
298 cd02991 UAS_ETEA UAS family, E 68.9 38 0.00083 23.9 7.7 71 62-135 5-82 (116)
299 cd03041 GST_N_2GST_N GST_N fam 67.8 2.6 5.6E-05 27.2 0.8 26 16-41 7-33 (77)
300 PRK14018 trifunctional thiored 67.5 15 0.00031 33.2 5.8 26 72-101 55-80 (521)
301 PLN02412 probable glutathione 66.7 28 0.0006 26.0 6.5 19 73-95 29-47 (167)
302 KOG0191 Thioredoxin/protein di 65.7 14 0.00029 31.6 5.1 55 72-135 47-107 (383)
303 TIGR02180 GRX_euk Glutaredoxin 65.1 7.5 0.00016 24.8 2.7 28 16-43 6-36 (84)
304 PF10087 DUF2325: Uncharacteri 64.5 33 0.00071 23.2 6.0 57 64-123 39-95 (97)
305 cd03014 PRX_Atyp2cys Peroxired 64.3 23 0.00049 25.2 5.4 43 72-117 25-72 (143)
306 TIGR02540 gpx7 putative glutat 63.4 19 0.00041 26.2 4.9 21 73-97 22-42 (153)
307 cd04911 ACT_AKiii-YclM-BS_1 AC 63.3 7.5 0.00016 25.8 2.4 21 89-109 15-35 (76)
308 cd03012 TlpA_like_DipZ_like Tl 63.1 8.4 0.00018 27.1 2.9 24 72-99 22-45 (126)
309 PF14353 CpXC: CpXC protein 61.8 6 0.00013 28.4 1.9 45 88-138 3-60 (128)
310 COG5429 Uncharacterized secret 61.5 10 0.00022 30.7 3.3 63 76-143 45-128 (261)
311 cd02968 SCO SCO (an acronym fo 60.3 41 0.00088 23.6 6.1 24 72-99 21-45 (142)
312 cd03146 GAT1_Peptidase_E Type 60.1 78 0.0017 24.6 8.1 92 61-162 18-110 (212)
313 PTZ00256 glutathione peroxidas 60.0 33 0.00072 25.9 5.9 25 87-111 51-82 (183)
314 PLN02399 phospholipid hydroper 59.3 36 0.00078 27.4 6.1 35 73-111 99-140 (236)
315 KOG0912 Thiol-disulfide isomer 59.2 21 0.00045 30.2 4.8 66 66-140 5-85 (375)
316 cd03016 PRX_1cys Peroxiredoxin 58.4 46 0.001 25.7 6.5 37 74-113 26-69 (203)
317 TIGR03759 conj_TIGR03759 integ 57.7 19 0.00042 28.3 4.2 36 72-112 108-143 (200)
318 cd03031 GRX_GRX_like Glutaredo 56.8 4 8.6E-05 30.5 0.2 32 18-49 15-47 (147)
319 KOG0190 Protein disulfide isom 56.8 4.1 8.9E-05 36.3 0.3 19 87-105 394-412 (493)
320 TIGR02764 spore_ybaN_pdaB poly 56.5 29 0.00062 26.3 5.0 85 15-109 102-187 (191)
321 cd03019 DsbA_DsbA DsbA family, 56.0 13 0.00028 27.4 2.9 50 93-142 100-156 (178)
322 KOG0908 Thioredoxin-like prote 55.6 21 0.00045 29.3 4.2 58 75-141 24-88 (288)
323 cd01480 vWA_collagen_alpha_1-V 54.8 43 0.00094 25.2 5.8 61 76-138 113-184 (186)
324 TIGR03137 AhpC peroxiredoxin. 53.6 69 0.0015 24.3 6.7 38 72-113 30-75 (187)
325 COG1105 FruK Fructose-1-phosph 51.7 22 0.00049 29.9 3.9 105 13-121 54-175 (310)
326 PF04566 RNA_pol_Rpb2_4: RNA p 50.9 13 0.00028 23.6 1.9 13 133-145 1-13 (63)
327 cd00248 Mth938-like Mth938-lik 50.5 28 0.0006 24.4 3.8 35 74-111 53-87 (109)
328 PRK12759 bifunctional gluaredo 50.0 14 0.00029 32.2 2.5 29 16-44 9-38 (410)
329 PF15643 Tox-PL-2: Papain fold 49.4 24 0.00053 24.6 3.2 51 88-141 20-73 (100)
330 PRK12898 secA preprotein trans 48.9 37 0.0008 31.6 5.2 36 73-114 473-508 (656)
331 PLN02919 haloacid dehalogenase 48.1 67 0.0015 31.5 7.0 26 71-100 418-443 (1057)
332 KOG2961 Predicted hydrolase (H 46.6 1.3E+02 0.0028 23.0 7.0 93 64-159 70-166 (190)
333 PF01323 DSBA: DSBA-like thior 46.1 16 0.00035 27.2 2.1 32 76-112 2-38 (193)
334 cd03024 DsbA_FrnE DsbA family, 45.9 16 0.00034 27.6 2.1 22 125-146 171-193 (201)
335 PRK15000 peroxidase; Provision 45.5 1.1E+02 0.0024 23.6 6.8 39 72-113 33-78 (200)
336 cd03008 TryX_like_RdCVF Trypar 45.3 1.2E+02 0.0027 22.3 6.7 46 93-140 78-126 (146)
337 PF02780 Transketolase_C: Tran 45.2 24 0.00051 24.8 2.8 36 73-112 9-44 (124)
338 PF09822 ABC_transp_aux: ABC-t 43.8 69 0.0015 25.7 5.6 69 59-127 12-86 (271)
339 TIGR02873 spore_ylxY probable 43.1 67 0.0014 26.2 5.4 80 16-109 182-263 (268)
340 PF01451 LMWPc: Low molecular 43.0 70 0.0015 22.7 5.0 43 64-106 16-61 (138)
341 PF11287 DUF3088: Protein of u 42.6 46 0.00099 23.8 3.8 49 87-138 22-77 (112)
342 cd01521 RHOD_PspE2 Member of t 42.4 1.1E+02 0.0023 20.8 5.7 32 70-105 61-92 (110)
343 PRK13599 putative peroxiredoxi 42.2 1E+02 0.0022 24.2 6.2 39 72-113 27-72 (215)
344 TIGR01689 EcbF-BcbF capsule bi 41.7 90 0.0019 22.5 5.4 49 61-113 27-87 (126)
345 PF10865 DUF2703: Domain of un 41.6 54 0.0012 23.6 4.1 47 87-140 13-72 (120)
346 COG3011 Predicted thiol-disulf 41.6 45 0.00098 24.7 3.8 66 75-148 10-81 (137)
347 PF08599 Nbs1_C: DNA damage re 41.6 15 0.00032 23.5 1.1 33 125-163 13-46 (65)
348 PLN02234 1-deoxy-D-xylulose-5- 41.5 30 0.00064 32.1 3.4 80 73-160 544-629 (641)
349 cd03013 PRX5_like Peroxiredoxi 41.3 1.4E+02 0.0031 21.9 6.6 44 72-118 28-80 (155)
350 PTZ00137 2-Cys peroxiredoxin; 40.9 1.3E+02 0.0029 24.5 6.8 42 68-113 93-142 (261)
351 PF05122 SpdB: Mobile element 40.8 12 0.00026 22.7 0.5 9 15-23 25-33 (53)
352 PTZ00253 tryparedoxin peroxida 40.7 1E+02 0.0023 23.5 6.0 38 74-114 37-81 (199)
353 cd03010 TlpA_like_DsbE TlpA-li 40.5 1.2E+02 0.0026 20.8 6.7 64 64-136 44-108 (127)
354 cd00079 HELICc Helicase superf 40.4 1.1E+02 0.0025 20.5 7.3 55 64-124 18-73 (131)
355 KOG2454 Betaine aldehyde dehyd 40.2 37 0.00081 29.8 3.6 60 63-122 206-266 (583)
356 PLN02683 pyruvate dehydrogenas 39.6 89 0.0019 26.6 5.8 65 73-145 228-297 (356)
357 PF10825 DUF2752: Protein of u 39.1 25 0.00053 21.4 1.8 20 10-30 7-26 (52)
358 PRK10954 periplasmic protein d 38.9 46 0.001 25.7 3.7 53 93-145 124-183 (207)
359 KOG0191 Thioredoxin/protein di 38.3 94 0.002 26.4 5.8 18 76-98 166-183 (383)
360 PRK10382 alkyl hydroperoxide r 38.0 1.2E+02 0.0027 23.2 5.9 36 74-113 32-75 (187)
361 PF00731 AIRC: AIR carboxylase 37.9 42 0.00092 25.1 3.2 47 75-124 2-51 (150)
362 PLN02948 phosphoribosylaminoim 37.4 60 0.0013 29.6 4.7 75 75-152 412-513 (577)
363 PLN02790 transketolase 37.1 82 0.0018 29.1 5.6 86 74-163 541-640 (654)
364 TIGR03714 secA2 accessory Sec 37.0 2.6E+02 0.0057 26.6 8.8 44 72-121 423-466 (762)
365 PF00004 AAA: ATPase family as 36.9 92 0.002 21.1 4.8 58 76-138 1-67 (132)
366 PLN03194 putative disease resi 36.8 74 0.0016 24.8 4.5 66 20-101 41-108 (187)
367 PF09419 PGP_phosphatase: Mito 36.7 1.9E+02 0.0041 22.0 7.3 77 61-139 62-146 (168)
368 COG3340 PepE Peptidase E [Amin 36.6 2.2E+02 0.0048 22.8 8.1 92 63-161 20-114 (224)
369 TIGR01626 ytfJ_HI0045 conserve 35.8 1.8E+02 0.0039 22.4 6.5 38 72-114 59-105 (184)
370 COG4232 Thiol:disulfide interc 35.8 1.1E+02 0.0024 28.0 5.9 65 65-135 463-540 (569)
371 cd06388 PBP1_iGluR_AMPA_GluR4 35.4 1.6E+02 0.0034 24.9 6.7 84 62-150 51-147 (371)
372 COG1911 RPL30 Ribosomal protei 35.4 1.6E+02 0.0034 20.6 7.6 67 60-138 4-70 (100)
373 PRK11892 pyruvate dehydrogenas 35.3 1.4E+02 0.0031 26.4 6.6 26 88-113 351-376 (464)
374 PRK13189 peroxiredoxin; Provis 35.2 1.5E+02 0.0032 23.4 6.1 28 87-114 46-80 (222)
375 PF15632 ATPgrasp_Ter: ATP-gra 35.1 2.8E+02 0.0061 23.5 8.2 85 59-152 50-140 (329)
376 PRK13190 putative peroxiredoxi 34.6 1.5E+02 0.0033 22.8 6.0 38 73-114 27-72 (202)
377 COG1651 DsbG Protein-disulfide 34.4 38 0.00082 26.6 2.6 24 73-101 85-108 (244)
378 PRK14812 hypothetical protein; 34.1 35 0.00077 24.6 2.2 18 18-35 1-19 (119)
379 COG0394 Wzb Protein-tyrosine-p 33.8 82 0.0018 23.0 4.2 42 65-107 21-62 (139)
380 COG2761 FrnE Predicted dithiol 33.6 20 0.00042 28.8 0.8 26 74-102 4-29 (225)
381 PHA02558 uvsW UvsW helicase; P 33.3 3E+02 0.0066 24.3 8.4 65 74-144 345-410 (501)
382 cd06387 PBP1_iGluR_AMPA_GluR3 32.7 1.5E+02 0.0032 25.3 6.2 84 61-149 50-146 (372)
383 PF03575 Peptidase_S51: Peptid 32.6 1.2E+02 0.0026 22.1 5.0 61 92-161 2-64 (154)
384 PRK13191 putative peroxiredoxi 31.5 2.2E+02 0.0047 22.3 6.5 40 72-115 32-79 (215)
385 PLN02225 1-deoxy-D-xylulose-5- 31.3 1.7E+02 0.0037 27.5 6.6 65 73-145 567-635 (701)
386 PF13364 BetaGal_dom4_5: Beta- 31.3 37 0.00081 23.7 1.9 19 126-144 60-78 (111)
387 COG2089 SpsE Sialic acid synth 31.1 3.4E+02 0.0074 23.2 8.4 102 24-138 34-156 (347)
388 PF09413 DUF2007: Domain of un 30.9 64 0.0014 19.9 2.8 43 91-138 11-53 (67)
389 PF07449 HyaE: Hydrogenase-1 e 30.7 1.9E+02 0.0042 20.3 7.4 72 73-148 26-103 (107)
390 cd01444 GlpE_ST GlpE sulfurtra 30.2 1.5E+02 0.0033 19.0 6.0 38 62-105 45-82 (96)
391 COG1651 DsbG Protein-disulfide 29.9 68 0.0015 25.1 3.4 24 125-148 211-234 (244)
392 TIGR00963 secA preprotein tran 29.6 4.4E+02 0.0095 25.1 9.0 47 72-125 404-450 (745)
393 TIGR03439 methyl_EasF probable 29.2 1.6E+02 0.0034 24.8 5.6 48 88-137 84-136 (319)
394 PTZ00110 helicase; Provisional 29.2 2.9E+02 0.0062 24.9 7.6 54 64-123 367-421 (545)
395 PRK12900 secA preprotein trans 29.1 4.1E+02 0.0088 26.3 8.8 48 72-126 597-644 (1025)
396 PRK00522 tpx lipid hydroperoxi 29.1 1.9E+02 0.0041 21.4 5.6 45 73-121 44-94 (167)
397 PRK11391 etp phosphotyrosine-p 28.7 1.1E+02 0.0024 22.3 4.2 41 64-106 20-60 (144)
398 KOG1672 ATP binding protein [P 28.1 2.4E+02 0.0053 22.3 6.0 78 63-146 74-159 (211)
399 cd01474 vWA_ATR ATR (Anthrax T 28.0 2.5E+02 0.0055 20.8 7.6 51 76-128 107-157 (185)
400 COG3917 NahD 2-hydroxychromene 27.8 1.3E+02 0.0028 23.5 4.4 36 114-149 155-196 (203)
401 TIGR00853 pts-lac PTS system, 27.7 1.4E+02 0.0031 20.2 4.3 27 118-144 64-90 (95)
402 PRK13600 putative ribosomal pr 27.7 1.9E+02 0.0042 19.4 5.2 22 115-136 41-62 (84)
403 PRK05298 excinuclease ABC subu 27.5 2.1E+02 0.0046 26.4 6.6 50 63-118 435-485 (652)
404 cd03025 DsbA_FrnE_like DsbA fa 27.4 38 0.00083 25.2 1.5 21 75-100 2-22 (193)
405 COG0045 SucC Succinyl-CoA synt 27.2 1.1E+02 0.0023 26.7 4.3 46 93-138 6-54 (387)
406 cd01473 vWA_CTRP CTRP for CS 27.2 2.8E+02 0.0061 21.0 6.6 59 76-136 112-174 (192)
407 TIGR00385 dsbE periplasmic pro 26.8 2.6E+02 0.0057 20.6 6.4 42 93-138 105-149 (173)
408 PRK10126 tyrosine phosphatase; 26.8 1.3E+02 0.0029 21.8 4.3 40 65-106 21-60 (147)
409 cd05564 PTS_IIB_chitobiose_lic 26.7 1.8E+02 0.0039 19.6 4.7 31 114-144 53-86 (96)
410 PRK12571 1-deoxy-D-xylulose-5- 26.6 1.7E+02 0.0038 27.0 5.8 64 74-145 505-572 (641)
411 KOG2733 Uncharacterized membra 26.1 3.5E+02 0.0076 23.7 7.1 82 64-151 74-177 (423)
412 PRK05282 (alpha)-aspartyl dipe 25.9 3.5E+02 0.0075 21.6 8.1 88 63-161 20-108 (233)
413 smart00226 LMWPc Low molecular 25.4 1.5E+02 0.0032 21.0 4.3 42 64-106 16-57 (140)
414 PF08308 PEGA: PEGA domain; I 25.2 52 0.0011 20.6 1.6 11 132-142 14-24 (71)
415 TIGR03865 PQQ_CXXCW PQQ-depend 24.9 85 0.0018 23.4 3.0 29 72-105 115-143 (162)
416 PF11008 DUF2846: Protein of u 24.9 55 0.0012 22.9 1.9 16 128-143 40-55 (117)
417 cd05560 Xcc1710_like Xcc1710_l 24.8 1.3E+02 0.0029 20.9 3.8 36 73-111 52-87 (109)
418 TIGR02884 spore_pdaA delta-lac 24.8 2.6E+02 0.0056 21.8 5.9 85 16-109 135-220 (224)
419 cd06389 PBP1_iGluR_AMPA_GluR2 24.4 2.1E+02 0.0046 24.0 5.6 83 62-149 45-140 (370)
420 TIGR00614 recQ_fam ATP-depende 24.2 3.8E+02 0.0083 23.4 7.4 46 72-123 225-270 (470)
421 cd03082 TRX_Fd_NuoE_W_FDH_beta 24.1 99 0.0022 19.8 2.8 25 128-152 45-71 (72)
422 KOG1422 Intracellular Cl- chan 23.9 92 0.002 24.9 3.0 59 17-75 19-89 (221)
423 PF11399 DUF3192: Protein of u 23.7 58 0.0013 22.9 1.7 14 128-141 80-93 (102)
424 cd02974 AhpF_NTD_N Alkyl hydro 23.7 97 0.0021 21.1 2.8 44 62-111 5-57 (94)
425 PRK10606 btuE putative glutath 23.6 2.8E+02 0.006 21.2 5.7 8 87-94 35-42 (183)
426 PF08821 CGGC: CGGC domain; I 23.4 2.6E+02 0.0057 19.5 5.1 48 60-107 51-103 (107)
427 cd02127 PA_hPAP21_like PA_hPAP 23.3 1.7E+02 0.0037 20.7 4.2 58 73-138 34-97 (118)
428 CHL00144 odpB pyruvate dehydro 23.3 2.1E+02 0.0045 24.0 5.3 26 88-113 212-237 (327)
429 PRK12906 secA preprotein trans 23.1 5E+02 0.011 24.9 8.2 39 72-116 439-477 (796)
430 COG5561 Predicted metal-bindin 23.1 2.3E+02 0.0049 19.6 4.4 43 65-107 46-94 (101)
431 TIGR00631 uvrb excinuclease AB 23.1 3.3E+02 0.0071 25.3 7.0 51 63-119 431-482 (655)
432 PF14237 DUF4339: Domain of un 23.0 91 0.002 17.9 2.3 24 133-156 4-29 (45)
433 PF01522 Polysacc_deac_1: Poly 22.6 73 0.0016 21.6 2.1 37 65-107 87-123 (123)
434 cd06386 PBP1_NPR_C_like Ligand 22.3 4.7E+02 0.01 21.9 10.7 118 17-137 74-202 (387)
435 PRK10670 hypothetical protein; 22.1 1.2E+02 0.0025 22.7 3.2 42 94-135 3-50 (159)
436 cd00887 MoeA MoeA family. Memb 22.1 3.3E+02 0.0072 23.3 6.5 66 24-108 199-265 (394)
437 PTZ00494 tuzin-like protein; P 21.9 4E+02 0.0086 24.4 6.8 66 64-137 384-451 (664)
438 PLN02582 1-deoxy-D-xylulose-5- 21.8 3.1E+02 0.0067 25.7 6.5 64 74-145 544-611 (677)
439 cd04333 ProX_deacylase This CD 21.6 1.9E+02 0.0042 20.8 4.3 34 93-126 2-35 (148)
440 PF11238 DUF3039: Protein of u 21.6 60 0.0013 20.4 1.3 34 66-99 17-57 (58)
441 PF10576 EndIII_4Fe-2S: Iron-s 21.4 37 0.00081 15.8 0.3 9 13-21 2-10 (17)
442 TIGR00635 ruvB Holliday juncti 21.3 4E+02 0.0087 21.4 6.6 56 75-138 32-90 (305)
443 TIGR00734 hisAF_rel hisA/hisF 21.1 2.4E+02 0.0052 22.1 5.0 60 92-153 143-206 (221)
444 TIGR01182 eda Entner-Doudoroff 20.9 3.3E+02 0.0071 21.3 5.7 78 69-153 3-80 (204)
445 cd01528 RHOD_2 Member of the R 20.9 2.1E+02 0.0046 18.8 4.2 36 64-105 46-84 (101)
446 cd01524 RHOD_Pyr_redox Member 20.8 2.4E+02 0.0053 18.0 4.5 42 63-112 41-82 (90)
447 PLN02817 glutathione dehydroge 20.7 1E+02 0.0022 25.0 2.9 31 8-38 58-92 (265)
448 KOG2603 Oligosaccharyltransfer 20.7 2.6E+02 0.0057 23.7 5.3 56 76-136 64-133 (331)
449 PF14437 MafB19-deam: MafB19-l 20.5 1.8E+02 0.0038 21.8 3.8 33 73-109 99-132 (146)
450 PF08442 ATP-grasp_2: ATP-gras 20.5 48 0.0011 25.9 0.9 45 94-138 6-53 (202)
451 PF11324 DUF3126: Protein of u 20.4 74 0.0016 20.3 1.6 13 131-143 30-42 (63)
No 1
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-36 Score=209.06 Aligned_cols=101 Identities=50% Similarity=0.994 Sum_probs=98.2
Q ss_pred cHHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCC-CCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEe
Q 030914 62 SLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYN-VPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFI 140 (169)
Q Consensus 62 ~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~-v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~i 140 (169)
...++|++.++.|+|+|||||||+.|.|+|+.++.++|..+| ++|..+||+.|+++|+.|+++++|||+||+||||+||
T Consensus 3 ~i~~~I~~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GEfv 82 (105)
T COG0278 3 EILDRIQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGEFV 82 (105)
T ss_pred hHHHHHHHHhhcCceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhcCCCCCceeeECCEEe
Confidence 467899999999999999999999999999999999999999 8999999999999999999999999999999999999
Q ss_pred eccHHHHHHHhcccHHHHHhcc
Q 030914 141 GGSDIILNMHQSGELKEKLKGI 162 (169)
Q Consensus 141 GG~d~l~~~~~~g~L~~~L~~~ 162 (169)
||+|++.+|+++|+|+++|+.+
T Consensus 83 GG~DIv~Em~q~GELq~~l~~~ 104 (105)
T COG0278 83 GGCDIVREMYQSGELQTLLKEA 104 (105)
T ss_pred ccHHHHHHHHHcchHHHHHHhc
Confidence 9999999999999999999865
No 2
>PRK10824 glutaredoxin-4; Provisional
Probab=100.00 E-value=1.4e-35 Score=213.10 Aligned_cols=107 Identities=40% Similarity=0.865 Sum_probs=102.0
Q ss_pred cHHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEee
Q 030914 62 SLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIG 141 (169)
Q Consensus 62 ~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iG 141 (169)
+..++|++++++++||||+||||+.|+||||.+|+++|+++|++|.++||+.+++++++|++++||+|+|||||||+|||
T Consensus 3 ~~~~~v~~~I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI~G~~IG 82 (115)
T PRK10824 3 TTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVG 82 (115)
T ss_pred hHHHHHHHHHhcCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCCCCCCeEEECCEEEc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHhcccHHHHHhcccccCCC
Q 030914 142 GSDIILNMHQSGELKEKLKGIASNQKS 168 (169)
Q Consensus 142 G~d~l~~~~~~g~L~~~L~~~~~~~~~ 168 (169)
|+|++.+|+++|+|+++|+.+++...+
T Consensus 83 G~ddl~~l~~~G~L~~lL~~~~~~~~~ 109 (115)
T PRK10824 83 GCDIVIEMYQRGELQQLIKETAAKYKS 109 (115)
T ss_pred ChHHHHHHHHCCCHHHHHHHHHhhhcc
Confidence 999999999999999999988775543
No 3
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=99.97 E-value=2.3e-31 Score=186.32 Aligned_cols=96 Identities=56% Similarity=1.081 Sum_probs=92.9
Q ss_pred HHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeecc
Q 030914 64 KEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGS 143 (169)
Q Consensus 64 ~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~ 143 (169)
.+++++++++++|+||++|+++.|+||||.+|+++|+++||+|+++||..+++.++++++++|++|+|||||||++|||+
T Consensus 2 ~~~v~~~i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~g~~iGG~ 81 (97)
T TIGR00365 2 IERIKEQIKENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVKGEFVGGC 81 (97)
T ss_pred hHHHHHHhccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEECCEEEeCh
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccHHHHH
Q 030914 144 DIILNMHQSGELKEKL 159 (169)
Q Consensus 144 d~l~~~~~~g~L~~~L 159 (169)
|++.+|+++|+|.++|
T Consensus 82 ddl~~l~~~g~L~~~l 97 (97)
T TIGR00365 82 DIIMEMYQSGELQTLL 97 (97)
T ss_pred HHHHHHHHCcChHHhC
Confidence 9999999999999875
No 4
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.4e-30 Score=203.40 Aligned_cols=100 Identities=51% Similarity=0.894 Sum_probs=97.3
Q ss_pred HHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeec
Q 030914 63 LKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGG 142 (169)
Q Consensus 63 ~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG 142 (169)
.+++++++++.++|+|||||+|+.|.|+|+++++.+|++++|+|..+||..|+++|+.+|++|.|||+|||||||+||||
T Consensus 128 ~~~~l~~lv~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GEFiGG 207 (227)
T KOG0911|consen 128 LDNRLEKLVKAKPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGEFIGG 207 (227)
T ss_pred HHHHHHHhcccCeEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhcCCCCccceeECCEeccC
Confidence 66799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHhcccHHHHHhcc
Q 030914 143 SDIILNMHQSGELKEKLKGI 162 (169)
Q Consensus 143 ~d~l~~~~~~g~L~~~L~~~ 162 (169)
+|++.+|+++|+|+..|+++
T Consensus 208 lDIl~~m~~~geL~~~l~~~ 227 (227)
T KOG0911|consen 208 LDILKEMHEKGELVYTLKEA 227 (227)
T ss_pred cHHHHHHhhcccHHHHhhcC
Confidence 99999999999999999864
No 5
>PTZ00062 glutaredoxin; Provisional
Probab=99.97 E-value=7.9e-30 Score=199.99 Aligned_cols=101 Identities=37% Similarity=0.766 Sum_probs=97.5
Q ss_pred ccHHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEe
Q 030914 61 LSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFI 140 (169)
Q Consensus 61 ~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~i 140 (169)
+++.+++++++++++|+||+||+|+.|+||||++++++|++++|+|.++||+.++++|++|++++||+|+|||||||++|
T Consensus 100 ~~~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI~G~~I 179 (204)
T PTZ00062 100 EDTVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSNWPTYPQLYVNGELI 179 (204)
T ss_pred HHHHHHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEECCEEE
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccHHHHHHHhcccHHHHHhc
Q 030914 141 GGSDIILNMHQSGELKEKLKG 161 (169)
Q Consensus 141 GG~d~l~~~~~~g~L~~~L~~ 161 (169)
||+|++++|+++|+|+++|..
T Consensus 180 GG~d~l~~l~~~G~L~~~l~~ 200 (204)
T PTZ00062 180 GGHDIIKELYESNSLRKVIPD 200 (204)
T ss_pred cChHHHHHHHHcCChhhhhhh
Confidence 999999999999999999864
No 6
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=99.96 E-value=1.3e-29 Score=174.97 Aligned_cols=90 Identities=49% Similarity=0.998 Sum_probs=87.0
Q ss_pred HHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHH
Q 030914 67 VEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDII 146 (169)
Q Consensus 67 i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l 146 (169)
|++++++++|+||++|+|+.|+||||.+++++|+++|++|+++||..++++++++++.+|+.|+|+|||||++|||+|++
T Consensus 1 ~~~~i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~~l 80 (90)
T cd03028 1 IKKLIKENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYVNGELVGGCDIV 80 (90)
T ss_pred ChhhhccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEECCEEEeCHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccHH
Q 030914 147 LNMHQSGELK 156 (169)
Q Consensus 147 ~~~~~~g~L~ 156 (169)
++++++|+|+
T Consensus 81 ~~l~~~g~L~ 90 (90)
T cd03028 81 KEMHESGELQ 90 (90)
T ss_pred HHHHHcCCcC
Confidence 9999999985
No 7
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=99.96 E-value=6.4e-29 Score=174.56 Aligned_cols=93 Identities=24% Similarity=0.497 Sum_probs=86.2
Q ss_pred HHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHH---HHHHHHHhcCCCCCcEEEeCCeEeeccH
Q 030914 68 EQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPE---LKSAVKAFSHWPTFPQIFIKGEFIGGSD 144 (169)
Q Consensus 68 ~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~---~~~~l~~~~g~~t~P~vfi~g~~iGG~d 144 (169)
++++++++|+||++ ++||||.+++++|+++|++|+++||+.+++ .++++.+++|++|+|+|||||++|||+|
T Consensus 2 ~~~i~~~~Vvvysk-----~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~d 76 (99)
T TIGR02189 2 RRMVSEKAVVIFSR-----SSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLE 76 (99)
T ss_pred hhhhccCCEEEEEC-----CCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHH
Confidence 56789999999999 799999999999999999999999998754 6678888899999999999999999999
Q ss_pred HHHHHHhcccHHHHHhccccc
Q 030914 145 IILNMHQSGELKEKLKGIASN 165 (169)
Q Consensus 145 ~l~~~~~~g~L~~~L~~~~~~ 165 (169)
++.+|+++|+|+++|+.+++.
T Consensus 77 dl~~l~~~G~L~~~l~~~~~~ 97 (99)
T TIGR02189 77 NVMALHISGSLVPMLKQAGAL 97 (99)
T ss_pred HHHHHHHcCCHHHHHHHhCcc
Confidence 999999999999999988753
No 8
>PHA03050 glutaredoxin; Provisional
Probab=99.96 E-value=2.1e-28 Score=174.43 Aligned_cols=97 Identities=26% Similarity=0.420 Sum_probs=92.0
Q ss_pred HHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCCC---CeEEEEcCC---CHHHHHHHHHhcCCCCCcEEEeCC
Q 030914 64 KEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNV---PISARNILE---DPELKSAVKAFSHWPTFPQIFIKG 137 (169)
Q Consensus 64 ~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v---~~~~~di~~---~~~~~~~l~~~~g~~t~P~vfi~g 137 (169)
++++++++++++|+||++ ++||||.+|+++|+++++ +|+.+||+. +.++++++++.+|+.|+|+|||||
T Consensus 3 ~~~v~~~i~~~~V~vys~-----~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g 77 (108)
T PHA03050 3 EEFVQQRLANNKVTIFVK-----FTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGK 77 (108)
T ss_pred HHHHHHHhccCCEEEEEC-----CCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECC
Confidence 578999999999999999 789999999999999999 799999986 678999999999999999999999
Q ss_pred eEeeccHHHHHHHhcccHHHHHhccccc
Q 030914 138 EFIGGSDIILNMHQSGELKEKLKGIASN 165 (169)
Q Consensus 138 ~~iGG~d~l~~~~~~g~L~~~L~~~~~~ 165 (169)
++|||+|++++|+++|+|.++|+.+++.
T Consensus 78 ~~iGG~ddl~~l~~~g~L~~~l~~~~~~ 105 (108)
T PHA03050 78 TSIGGYSDLLEIDNMDALGDILSSIGVL 105 (108)
T ss_pred EEEeChHHHHHHHHcCCHHHHHHHcccc
Confidence 9999999999999999999999998864
No 9
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=4.6e-25 Score=155.73 Aligned_cols=98 Identities=32% Similarity=0.544 Sum_probs=90.7
Q ss_pred HHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCC---HHHHHHHHHhcCCCCCcEEEeCCeE
Q 030914 63 LKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILED---PELKSAVKAFSHWPTFPQIFIKGEF 139 (169)
Q Consensus 63 ~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~---~~~~~~l~~~~g~~t~P~vfi~g~~ 139 (169)
..+++++++.+++||||+| .+||+|.+++.+|...++++..++++.+ .+++++|.+.+|.+|+|+|||+|+|
T Consensus 3 ~~~~v~~~i~~~~VVifSK-----s~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~ 77 (104)
T KOG1752|consen 3 AEAKVRKMISENPVVIFSK-----SSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKF 77 (104)
T ss_pred HHHHHHHHhhcCCEEEEEC-----CcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEE
Confidence 4567999999999999999 4899999999999999999999988863 5899999999999999999999999
Q ss_pred eeccHHHHHHHhcccHHHHHhccccc
Q 030914 140 IGGSDIILNMHQSGELKEKLKGIASN 165 (169)
Q Consensus 140 iGG~d~l~~~~~~g~L~~~L~~~~~~ 165 (169)
|||+++++++|.+|+|.++|+.+++.
T Consensus 78 iGG~~dl~~lh~~G~L~~~l~~~~~~ 103 (104)
T KOG1752|consen 78 IGGASDLMALHKSGELVPLLKEAGAL 103 (104)
T ss_pred EcCHHHHHHHHHcCCHHHHHHHhhcc
Confidence 99999999999999999999988753
No 10
>PRK10638 glutaredoxin 3; Provisional
Probab=99.91 E-value=1.2e-23 Score=142.77 Aligned_cols=82 Identities=30% Similarity=0.427 Sum_probs=78.6
Q ss_pred CCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHHHhcc
Q 030914 74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSG 153 (169)
Q Consensus 74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~~~~g 153 (169)
.+|+||++ ++||||.+|+.+|+++|++|+.+||+.+++.++++.+.+|..++|+||+||++|||+|++++++.+|
T Consensus 2 ~~v~ly~~-----~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~~g 76 (83)
T PRK10638 2 ANVEIYTK-----ATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDARG 76 (83)
T ss_pred CcEEEEEC-----CCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHHcC
Confidence 47999999 7899999999999999999999999999989999999999999999999999999999999999999
Q ss_pred cHHHHHh
Q 030914 154 ELKEKLK 160 (169)
Q Consensus 154 ~L~~~L~ 160 (169)
+|.++|+
T Consensus 77 ~l~~~~~ 83 (83)
T PRK10638 77 GLDPLLK 83 (83)
T ss_pred CHHHHhC
Confidence 9999885
No 11
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=99.90 E-value=2e-23 Score=156.15 Aligned_cols=90 Identities=23% Similarity=0.502 Sum_probs=82.5
Q ss_pred CeEEEeecCC-CCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCC----CCCcEEEeCCeEeeccHHHHHH
Q 030914 75 PVMLYMKGVP-EFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHW----PTFPQIFIKGEFIGGSDIILNM 149 (169)
Q Consensus 75 ~Vvly~k~~~-~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~----~t~P~vfi~g~~iGG~d~l~~~ 149 (169)
+|+||+++.. .+.+||+|.+|+++|++++|+|+++||+++++.+++|++++|+ .|+|||||+|++|||+|++++|
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del~~L 80 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDGRYLGGAEEVLRL 80 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHHHHH
Confidence 5899999644 3557999999999999999999999999999999999998775 9999999999999999999999
Q ss_pred HhcccHHHHHhcccc
Q 030914 150 HQSGELKEKLKGIAS 164 (169)
Q Consensus 150 ~~~g~L~~~L~~~~~ 164 (169)
+++|+|.++|+++..
T Consensus 81 ~e~G~L~~lL~~~~~ 95 (147)
T cd03031 81 NESGELRKLLKGIRA 95 (147)
T ss_pred HHcCCHHHHHhhccc
Confidence 999999999998743
No 12
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=99.90 E-value=1.7e-23 Score=140.45 Aligned_cols=79 Identities=30% Similarity=0.516 Sum_probs=76.1
Q ss_pred eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHHHhcccH
Q 030914 76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGEL 155 (169)
Q Consensus 76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~~~~g~L 155 (169)
|+||++ ++||+|.+|+++|+++|++|+.+||+.+++.++++.+.+|+.++|+|||||++|||++++.+++++|+|
T Consensus 1 v~ly~~-----~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~~g~l 75 (79)
T TIGR02181 1 VTIYTK-----PYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDREGKL 75 (79)
T ss_pred CEEEec-----CCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHHcCCh
Confidence 679998 799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 030914 156 KEKL 159 (169)
Q Consensus 156 ~~~L 159 (169)
+++|
T Consensus 76 ~~~l 79 (79)
T TIGR02181 76 DPLL 79 (79)
T ss_pred hhhC
Confidence 9875
No 13
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=99.87 E-value=1.4e-21 Score=129.35 Aligned_cols=74 Identities=31% Similarity=0.481 Sum_probs=70.3
Q ss_pred CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCC-CCcEEEeCCeEeeccHHHHHHHhcc
Q 030914 75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWP-TFPQIFIKGEFIGGSDIILNMHQSG 153 (169)
Q Consensus 75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~-t~P~vfi~g~~iGG~d~l~~~~~~g 153 (169)
+|+||++ ++||+|.+|+++|++++++|+++||+.+++.++++.+.+|+. ++|+|||||++|||++++++++++|
T Consensus 1 ~i~ly~~-----~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~~g 75 (75)
T cd03418 1 KVEIYTK-----PNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALERKG 75 (75)
T ss_pred CEEEEeC-----CCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHhCc
Confidence 4889999 789999999999999999999999999999999999888888 9999999999999999999999987
No 14
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.86 E-value=1.6e-21 Score=129.15 Aligned_cols=72 Identities=22% Similarity=0.321 Sum_probs=68.8
Q ss_pred CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHHHh
Q 030914 75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQ 151 (169)
Q Consensus 75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~~~ 151 (169)
+|+||++ ++||+|++|+++|+++||+|+.+||..+++.++++++++|+.++|+||+||++|||+|++.+|++
T Consensus 2 ~v~ly~~-----~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~~~~~ 73 (73)
T cd03027 2 RVTIYSR-----LGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIFFNEKLVGGLTDLKSLEE 73 (73)
T ss_pred EEEEEec-----CCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHhhcC
Confidence 6899999 78999999999999999999999999999999999999999999999999999999999999863
No 15
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=7.7e-23 Score=141.20 Aligned_cols=76 Identities=21% Similarity=0.325 Sum_probs=64.9
Q ss_pred hhhhccCCCCCCCCcchHHHHHHHHhCC-CCccc-ccCCCccccCCCCCcccccCCcccHHHHHHHHhhcCCeEEEeecC
Q 030914 6 SNLIFKGIASYPSARSSRIVSGSLYHNG-MKYST-DVPNDPDTHEDFRPTSKVDASGLSLKEVVEQDVKENPVMLYMKGV 83 (169)
Q Consensus 6 ~~~~~kg~~~~p~cgfs~~~~~~l~~~g-~~~~s-~vl~d~~~~~~~k~~s~~pt~~~~~~~~i~~~~~~~~Vvly~k~~ 83 (169)
++|||||||.+|+||||++++++|..+| ++|.+ |||.|+++|+++|++++|||.++ +|.+|
T Consensus 17 VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQ----------------Lyi~G- 79 (105)
T COG0278 17 VVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYSNWPTFPQ----------------LYVNG- 79 (105)
T ss_pred eEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhcCCCCCce----------------eeECC-
Confidence 6899999999999999999999999999 79998 99999999999999999999752 46665
Q ss_pred CCCCCCccHHHHHHHHhc
Q 030914 84 PEFPQCGFSSLAVRVLGA 101 (169)
Q Consensus 84 ~~~~~C~~c~~a~~~L~~ 101 (169)
+.-+-|.-+++++++
T Consensus 80 ---EfvGG~DIv~Em~q~ 94 (105)
T COG0278 80 ---EFVGGCDIVREMYQS 94 (105)
T ss_pred ---EEeccHHHHHHHHHc
Confidence 345556666666544
No 16
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=3.4e-21 Score=130.35 Aligned_cols=76 Identities=33% Similarity=0.516 Sum_probs=71.1
Q ss_pred CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCH--HHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHHHhc
Q 030914 75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDP--ELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQS 152 (169)
Q Consensus 75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~--~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~~~~ 152 (169)
.|+||++ ++||||.+|+++|++.|++|+++++..++ +.++.+++.+|.+|+|||||||++|||++++.++...
T Consensus 2 ~v~iyt~-----~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~~~~ 76 (80)
T COG0695 2 NVTIYTK-----PGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDALEAK 76 (80)
T ss_pred CEEEEEC-----CCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHHHhh
Confidence 6899999 78999999999999999999999999888 7778888888999999999999999999999999988
Q ss_pred ccH
Q 030914 153 GEL 155 (169)
Q Consensus 153 g~L 155 (169)
|.|
T Consensus 77 ~~l 79 (80)
T COG0695 77 GKL 79 (80)
T ss_pred ccC
Confidence 876
No 17
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=99.85 E-value=7.1e-21 Score=128.09 Aligned_cols=79 Identities=30% Similarity=0.531 Sum_probs=72.6
Q ss_pred eEEEeecCCCCCCCccHHHHHHHHhcCCCC--eEEEEcCCC---HHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHHH
Q 030914 76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVP--ISARNILED---PELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMH 150 (169)
Q Consensus 76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~--~~~~di~~~---~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~~ 150 (169)
|++|++ ++||+|.+++.+|++++++ |+.++|+.+ .+.++++++.+|.+++|+||+||++|||++++.+++
T Consensus 1 V~~f~~-----~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~ 75 (84)
T TIGR02180 1 VVVFSK-----SYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALY 75 (84)
T ss_pred CEEEEC-----CCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHH
Confidence 688998 7999999999999999999 888888763 567788999999999999999999999999999999
Q ss_pred hcccHHHHH
Q 030914 151 QSGELKEKL 159 (169)
Q Consensus 151 ~~g~L~~~L 159 (169)
++|+|.++|
T Consensus 76 ~~g~l~~~~ 84 (84)
T TIGR02180 76 KSGKLAELL 84 (84)
T ss_pred HcCChhhhC
Confidence 999999875
No 18
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=99.84 E-value=9.1e-21 Score=127.28 Aligned_cols=78 Identities=28% Similarity=0.574 Sum_probs=72.1
Q ss_pred CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCC---HHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHHHh
Q 030914 75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILED---PELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQ 151 (169)
Q Consensus 75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~---~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~~~ 151 (169)
+|++|++ ++||+|.+++++|++.+++|+.++++.+ .++++++++++|++++|+||++|++|||++++.++.+
T Consensus 1 ~v~~y~~-----~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~ 75 (82)
T cd03419 1 PVVVFSK-----SYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHK 75 (82)
T ss_pred CEEEEEc-----CCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHH
Confidence 5899998 7999999999999999999998888765 5578889999999999999999999999999999999
Q ss_pred cccHHH
Q 030914 152 SGELKE 157 (169)
Q Consensus 152 ~g~L~~ 157 (169)
+|+|++
T Consensus 76 ~g~l~~ 81 (82)
T cd03419 76 SGKLVK 81 (82)
T ss_pred cCCccC
Confidence 999975
No 19
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=99.84 E-value=1.1e-20 Score=130.96 Aligned_cols=85 Identities=19% Similarity=0.234 Sum_probs=75.9
Q ss_pred eEEEeecCC-CCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCC----CCCcEEEeCCeEeeccHHHHHHH
Q 030914 76 VMLYMKGVP-EFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHW----PTFPQIFIKGEFIGGSDIILNMH 150 (169)
Q Consensus 76 Vvly~k~~~-~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~----~t~P~vfi~g~~iGG~d~l~~~~ 150 (169)
|+||+.+.. .+..=..|.+++.+|+.++|+|+++||+.+++.++++.+.+|. +|+|||||||+||||+|++.+++
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~~l~ 81 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFEAK 81 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHHHHH
Confidence 678887654 2333357999999999999999999999999999999999864 99999999999999999999999
Q ss_pred hcccHHHHHh
Q 030914 151 QSGELKEKLK 160 (169)
Q Consensus 151 ~~g~L~~~L~ 160 (169)
++|+|.++|+
T Consensus 82 e~g~L~~lLk 91 (92)
T cd03030 82 ENNTLEEFLK 91 (92)
T ss_pred hCCCHHHHhC
Confidence 9999999986
No 20
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.82 E-value=4.6e-20 Score=124.13 Aligned_cols=74 Identities=28% Similarity=0.433 Sum_probs=66.7
Q ss_pred hhcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHHH
Q 030914 71 VKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMH 150 (169)
Q Consensus 71 ~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~~ 150 (169)
-++++|+||++ ++||+|.+++++|+++||+|+++||+.+++. +++++.+|+.++|+|||||++|||++++.+..
T Consensus 5 ~~~~~V~ly~~-----~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~-~~~~~~~g~~~vP~i~i~g~~igG~~~l~~~l 78 (79)
T TIGR02190 5 RKPESVVVFTK-----PGCPFCAKAKATLKEKGYDFEEIPLGNDARG-RSLRAVTGATTVPQVFIGGKLIGGSDELEAYL 78 (79)
T ss_pred CCCCCEEEEEC-----CCCHhHHHHHHHHHHcCCCcEEEECCCChHH-HHHHHHHCCCCcCeEEECCEEEcCHHHHHHHh
Confidence 46789999999 7999999999999999999999999887664 45777899999999999999999999998753
No 21
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.82 E-value=6.1e-20 Score=121.14 Aligned_cols=70 Identities=31% Similarity=0.484 Sum_probs=64.4
Q ss_pred CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHHH
Q 030914 75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMH 150 (169)
Q Consensus 75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~~ 150 (169)
+|+||++ ++||+|.+|+++|+++|++|+.+||+.++. .++++..+|+.++|+|||||++|||++++.++.
T Consensus 2 ~v~lys~-----~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~-~~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~l 71 (72)
T cd03029 2 SVSLFTK-----PGCPFCARAKAALQENGISYEEIPLGKDIT-GRSLRAVTGAMTVPQVFIDGELIGGSDDLEKYF 71 (72)
T ss_pred eEEEEEC-----CCCHHHHHHHHHHHHcCCCcEEEECCCChh-HHHHHHHhCCCCcCeEEECCEEEeCHHHHHHHh
Confidence 6899999 789999999999999999999999998874 567888899999999999999999999998874
No 22
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=99.80 E-value=3.9e-19 Score=121.59 Aligned_cols=73 Identities=18% Similarity=0.314 Sum_probs=65.1
Q ss_pred eEEEeecCCCCCCCccHHHHHHHHhcCC-----CCeEEEEcCCCHHHHHHHHHhcCC--CCCcEEEeCCeEeeccHHHHH
Q 030914 76 VMLYMKGVPEFPQCGFSSLAVRVLGAYN-----VPISARNILEDPELKSAVKAFSHW--PTFPQIFIKGEFIGGSDIILN 148 (169)
Q Consensus 76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~-----v~~~~~di~~~~~~~~~l~~~~g~--~t~P~vfi~g~~iGG~d~l~~ 148 (169)
|+||++ ++||+|.+|+++|++++ ++|+.+||..+...++++.+.+|+ .++|+|||||++|||+|++.+
T Consensus 2 V~vys~-----~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~ 76 (86)
T TIGR02183 2 VVIFGR-----PGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQ 76 (86)
T ss_pred EEEEeC-----CCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHH
Confidence 789999 79999999999999984 679999998776667778888887 899999999999999999999
Q ss_pred HHhcc
Q 030914 149 MHQSG 153 (169)
Q Consensus 149 ~~~~g 153 (169)
+++++
T Consensus 77 ~~~~~ 81 (86)
T TIGR02183 77 LVKEN 81 (86)
T ss_pred HHHhc
Confidence 97764
No 23
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.80 E-value=4.6e-19 Score=120.64 Aligned_cols=73 Identities=19% Similarity=0.267 Sum_probs=66.7
Q ss_pred CeEEEeecCCCCCCCccHHHHHHHHhc-----CCCCeEEEEcCCCHHHHHHHHHhcCC--CCCcEEEeCCeEeeccHHHH
Q 030914 75 PVMLYMKGVPEFPQCGFSSLAVRVLGA-----YNVPISARNILEDPELKSAVKAFSHW--PTFPQIFIKGEFIGGSDIIL 147 (169)
Q Consensus 75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~-----~~v~~~~~di~~~~~~~~~l~~~~g~--~t~P~vfi~g~~iGG~d~l~ 147 (169)
+|+||++ ++||+|.+|+++|++ .+++|+.+||..++..++++.+.+|+ .++|||||||++|||++++.
T Consensus 2 ~v~iy~~-----~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~ 76 (85)
T PRK11200 2 FVVIFGR-----PGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVDQKHIGGCTDFE 76 (85)
T ss_pred EEEEEeC-----CCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEECCEEEcCHHHHH
Confidence 6899999 789999999999999 89999999999887777888888876 89999999999999999999
Q ss_pred HHHhc
Q 030914 148 NMHQS 152 (169)
Q Consensus 148 ~~~~~ 152 (169)
++.+.
T Consensus 77 ~~~~~ 81 (85)
T PRK11200 77 AYVKE 81 (85)
T ss_pred HHHHH
Confidence 98754
No 24
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.78 E-value=1.3e-18 Score=112.63 Aligned_cols=72 Identities=42% Similarity=0.786 Sum_probs=68.2
Q ss_pred CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHHHh
Q 030914 75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQ 151 (169)
Q Consensus 75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~~~ 151 (169)
+|++|++ ++||+|++++.+|++++++|+++|+..+++.++++.+.+|+.++|++|+||++|||+++++++++
T Consensus 1 ~v~ly~~-----~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~~~ 72 (72)
T cd02066 1 KVVVFSK-----STCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGWPTVPQIFINGEFIGGYDDLKALHE 72 (72)
T ss_pred CEEEEEC-----CCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEecHHHHHHhhC
Confidence 5899999 78999999999999999999999999999999999999999999999999999999999998863
No 25
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=99.74 E-value=5.4e-18 Score=108.02 Aligned_cols=60 Identities=35% Similarity=0.632 Sum_probs=58.0
Q ss_pred eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEe
Q 030914 76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFI 140 (169)
Q Consensus 76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~i 140 (169)
|+||++ ++||+|.+++++|+++|++|+.+||+.+++.++++++.+|..++|+|||||++|
T Consensus 1 V~vy~~-----~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTK-----PGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEES-----TTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred cEEEEc-----CCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCCCccCEEEECCEEC
Confidence 789999 799999999999999999999999999999999999999999999999999987
No 26
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=99.74 E-value=8.7e-18 Score=144.43 Aligned_cols=85 Identities=29% Similarity=0.494 Sum_probs=74.0
Q ss_pred CCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHH--------hcCCCCCcEEEeCCeEeeccHH
Q 030914 74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKA--------FSHWPTFPQIFIKGEFIGGSDI 145 (169)
Q Consensus 74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~--------~~g~~t~P~vfi~g~~iGG~d~ 145 (169)
.+|+||++ ++||+|.+|+++|+++||+|+.+||+.++...+.+.+ .+|..|+|||||||++|||+|+
T Consensus 2 ~~V~vys~-----~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~ 76 (410)
T PRK12759 2 VEVRIYTK-----TNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDN 76 (410)
T ss_pred CcEEEEeC-----CCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchH
Confidence 47999999 7899999999999999999999999988754443222 3689999999999999999999
Q ss_pred HHHHHhcccHHHHHhccccc
Q 030914 146 ILNMHQSGELKEKLKGIASN 165 (169)
Q Consensus 146 l~~~~~~g~L~~~L~~~~~~ 165 (169)
+.+ .+|+|.++|++.+.-
T Consensus 77 l~~--~~g~l~~~~~~~~~~ 94 (410)
T PRK12759 77 LMA--RAGEVIARVKGSSLT 94 (410)
T ss_pred HHH--HhCCHHHHhcCCccc
Confidence 987 899999999986653
No 27
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=2.7e-18 Score=134.59 Aligned_cols=77 Identities=23% Similarity=0.279 Sum_probs=66.1
Q ss_pred hhhhccCCCCCCCCcchHHHHHHHHhCCCCccc-ccCCCccccCCCCCcccccCCcccHHHHHHHHhhcCCeEEEeecCC
Q 030914 6 SNLIFKGIASYPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKVDASGLSLKEVVEQDVKENPVMLYMKGVP 84 (169)
Q Consensus 6 ~~~~~kg~~~~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~~~~~k~~s~~pt~~~~~~~~i~~~~~~~~Vvly~k~~~ 84 (169)
+||||||+|++|+||||++++++|+.+|++|.+ |||.|+++|+.+|.+++|||.++ ||.+|
T Consensus 141 v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fSdWPTfPQ----------------lyI~G-- 202 (227)
T KOG0911|consen 141 VMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFSDWPTFPQ----------------LYVKG-- 202 (227)
T ss_pred EEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhcCCCCccc----------------eeECC--
Confidence 799999999999999999999999999999998 99999999999999999999752 57776
Q ss_pred CCCCCccHHHHHHHHhcC
Q 030914 85 EFPQCGFSSLAVRVLGAY 102 (169)
Q Consensus 85 ~~~~C~~c~~a~~~L~~~ 102 (169)
+-=|-|.-+++++++-
T Consensus 203 --EFiGGlDIl~~m~~~g 218 (227)
T KOG0911|consen 203 --EFIGGLDILKEMHEKG 218 (227)
T ss_pred --EeccCcHHHHHHhhcc
Confidence 3445566666666543
No 28
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=99.65 E-value=6.1e-16 Score=102.10 Aligned_cols=64 Identities=25% Similarity=0.344 Sum_probs=58.3
Q ss_pred eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCe-EeeccHH
Q 030914 76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGE-FIGGSDI 145 (169)
Q Consensus 76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~-~iGG~d~ 145 (169)
|+||++ ++||+|++++++|+++|++|+.+||..+++.+++++.. |..++|+|+++|. +|||++.
T Consensus 1 v~ly~~-----~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~~-g~~~vP~v~~~g~~~~~G~~~ 65 (72)
T TIGR02194 1 ITVYSK-----NNCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKAQ-GFRQVPVIVADGDLSWSGFRP 65 (72)
T ss_pred CEEEeC-----CCCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHc-CCcccCEEEECCCcEEeccCH
Confidence 579999 78999999999999999999999999999999998864 8899999999775 9999863
No 29
>PRK10329 glutaredoxin-like protein; Provisional
Probab=99.63 E-value=1.9e-15 Score=102.34 Aligned_cols=64 Identities=14% Similarity=0.250 Sum_probs=60.1
Q ss_pred CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccH
Q 030914 75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSD 144 (169)
Q Consensus 75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d 144 (169)
+|+||++ ++||+|.+++++|++.||+|+++||+.+++.+++++. .|..++|+|+++|..++|++
T Consensus 2 ~v~lYt~-----~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~-~g~~~vPvv~i~~~~~~Gf~ 65 (81)
T PRK10329 2 RITIYTR-----NDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRA-QGFRQLPVVIAGDLSWSGFR 65 (81)
T ss_pred EEEEEeC-----CCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHH-cCCCCcCEEEECCEEEecCC
Confidence 6899999 7999999999999999999999999999999888877 58999999999999999986
No 30
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=1.7e-15 Score=121.86 Aligned_cols=91 Identities=23% Similarity=0.511 Sum_probs=82.0
Q ss_pred cCCeEEEeecCC-CCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcC----CCCCcEEEeCCeEeeccHHHH
Q 030914 73 ENPVMLYMKGVP-EFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSH----WPTFPQIFIKGEFIGGSDIIL 147 (169)
Q Consensus 73 ~~~Vvly~k~~~-~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g----~~t~P~vfi~g~~iGG~d~l~ 147 (169)
.+.||+|+.+-. -+..--.|..++.+|++.+|.|+++||.+|...+++|+++.| ..++|+|||+|+||||.++++
T Consensus 130 e~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaeeV~ 209 (281)
T KOG2824|consen 130 EDRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKAVSLPRVFVKGRYIGGAEEVV 209 (281)
T ss_pred CceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhcccccCccCeEEEccEEeccHHHhh
Confidence 468999998755 345556799999999999999999999999999999998865 478999999999999999999
Q ss_pred HHHhcccHHHHHhccc
Q 030914 148 NMHQSGELKEKLKGIA 163 (169)
Q Consensus 148 ~~~~~g~L~~~L~~~~ 163 (169)
+|++.|+|.++|+++.
T Consensus 210 ~LnE~GkL~~lL~~~p 225 (281)
T KOG2824|consen 210 RLNEEGKLGKLLKGIP 225 (281)
T ss_pred hhhhcchHHHHHhcCC
Confidence 9999999999999876
No 31
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=99.50 E-value=8.6e-14 Score=97.46 Aligned_cols=86 Identities=23% Similarity=0.319 Sum_probs=65.0
Q ss_pred CeEEEeecCC-CCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcC---------CCCCcEEEeCCeEeeccH
Q 030914 75 PVMLYMKGVP-EFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSH---------WPTFPQIFIKGEFIGGSD 144 (169)
Q Consensus 75 ~Vvly~k~~~-~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g---------~~t~P~vfi~g~~iGG~d 144 (169)
.|.||..+.. +..-=..+.++..+|+.++|+|+.+||..+++.|+.+++..| .+-.||||+||+|+|+++
T Consensus 2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gdye 81 (99)
T PF04908_consen 2 VIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGDYE 81 (99)
T ss_dssp SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEEHH
T ss_pred EEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEeeHH
Confidence 4678876542 111124678999999999999999999999999999998773 345589999999999999
Q ss_pred HHHHHHhcccHHHHHh
Q 030914 145 IILNMHQSGELKEKLK 160 (169)
Q Consensus 145 ~l~~~~~~g~L~~~L~ 160 (169)
++.++.+.|+|.+.|+
T Consensus 82 ~f~ea~E~~~L~~fL~ 97 (99)
T PF04908_consen 82 DFEEANENGELEEFLK 97 (99)
T ss_dssp HHHHHHCTT-HHHHHT
T ss_pred HHHHHHhhCHHHHHhC
Confidence 9999999999999986
No 32
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.42 E-value=1.1e-12 Score=84.97 Aligned_cols=66 Identities=21% Similarity=0.244 Sum_probs=60.4
Q ss_pred CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHH
Q 030914 75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDI 145 (169)
Q Consensus 75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~ 145 (169)
.|++|+. ++||+|++++.+|++.+++|..+|++.+++.++++.+..|..++|.++++|+.++|++.
T Consensus 1 ~i~lf~~-----~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~~~~~~g~~~ 66 (74)
T TIGR02196 1 KVKVYTT-----PWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIGHKIIVGFDP 66 (74)
T ss_pred CEEEEcC-----CCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEECCEEEeeCCH
Confidence 3789988 79999999999999999999999999998888888888899999999999999988753
No 33
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=99.38 E-value=3.3e-12 Score=82.66 Aligned_cols=66 Identities=26% Similarity=0.515 Sum_probs=60.9
Q ss_pred CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHH
Q 030914 75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDI 145 (169)
Q Consensus 75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~ 145 (169)
+|++|+. ++||+|.+++.+|++.+++|..++++.++..++++.+.++..++|+|+++|+.|+|++.
T Consensus 1 ~v~l~~~-----~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~~~~~i~g~~~ 66 (73)
T cd02976 1 EVTVYTK-----PDCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVIGDEHLSGFRP 66 (73)
T ss_pred CEEEEeC-----CCChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEECCEEEecCCH
Confidence 4789988 78999999999999999999999999888888889888888999999999999999874
No 34
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.28 E-value=2.5e-11 Score=79.78 Aligned_cols=64 Identities=20% Similarity=0.342 Sum_probs=56.3
Q ss_pred CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhc-CCCCCcEEEe-CCeEeecc
Q 030914 75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFS-HWPTFPQIFI-KGEFIGGS 143 (169)
Q Consensus 75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~-g~~t~P~vfi-~g~~iGG~ 143 (169)
+|+||+. ++||+|++++.+|++.+++|+.+|++.++...+.+.+++ |..++|+|++ ||..+...
T Consensus 1 ~v~ly~~-----~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~~~~g~~l~~~ 66 (77)
T TIGR02200 1 TITVYGT-----TWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGNMTVPTVKFADGSFLTNP 66 (77)
T ss_pred CEEEEEC-----CCChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCCceeCEEEECCCeEecCC
Confidence 4789998 699999999999999999999999999988888888887 8899999977 56776654
No 35
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.12 E-value=1.9e-10 Score=74.16 Aligned_cols=58 Identities=19% Similarity=0.307 Sum_probs=49.1
Q ss_pred CeEEEeecCCCCCCCccHHHHHHHHhcC-----CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEee
Q 030914 75 PVMLYMKGVPEFPQCGFSSLAVRVLGAY-----NVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIG 141 (169)
Q Consensus 75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~-----~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iG 141 (169)
.|++|++ ++||+|.+++.+|++. +++|..+|++.+++ +.+..|..++|+++++|++++
T Consensus 2 ~v~~f~~-----~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~----l~~~~~i~~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVS-----PTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPD----LADEYGVMSVPAIVINGKVEF 64 (67)
T ss_pred EEEEEEC-----CCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHh----HHHHcCCcccCEEEECCEEEE
Confidence 4789998 7999999999999865 68899999987765 445568889999999999876
No 36
>PRK10824 glutaredoxin-4; Provisional
Probab=99.08 E-value=2.2e-11 Score=87.59 Aligned_cols=55 Identities=20% Similarity=0.255 Sum_probs=50.3
Q ss_pred hhhhccCCCCCCCCcchHHHHHHHHhCCCCccc-ccCCCccccCCCCCcccccCCc
Q 030914 6 SNLIFKGIASYPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKVDASG 60 (169)
Q Consensus 6 ~~~~~kg~~~~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~~~~~k~~s~~pt~~ 60 (169)
+++||||||+.|.|+||+++.++|+..|++|.. ++..|++.+..++..+.|+|.+
T Consensus 17 Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~~TVP 72 (115)
T PRK10824 17 ILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFP 72 (115)
T ss_pred EEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCCCCCC
Confidence 689999999999999999999999999999988 9999988888888888888753
No 37
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.98 E-value=5.6e-09 Score=69.38 Aligned_cols=70 Identities=14% Similarity=0.058 Sum_probs=58.5
Q ss_pred eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--CCeEeeccHHHHHHH
Q 030914 76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFI--KGEFIGGSDIILNMH 150 (169)
Q Consensus 76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~g~~iGG~d~l~~~~ 150 (169)
+.||+. +.||+|.+++.+|+++|++|+.+++..++....++.+.++..++|.+.. +|..+.+.+.+.+..
T Consensus 2 ~~Ly~~-----~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL 73 (77)
T cd03041 2 LELYEF-----EGSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYL 73 (77)
T ss_pred ceEecC-----CCCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHH
Confidence 568888 6899999999999999999999999877666778888888899999977 356777777666653
No 38
>PTZ00062 glutaredoxin; Provisional
Probab=98.94 E-value=1.7e-10 Score=90.82 Aligned_cols=54 Identities=31% Similarity=0.469 Sum_probs=50.0
Q ss_pred hhhhccCCCCCCCCcchHHHHHHHHhCCCCccc-ccCCCccccCCCCCcccccCC
Q 030914 6 SNLIFKGIASYPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKVDAS 59 (169)
Q Consensus 6 ~~~~~kg~~~~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~~~~~k~~s~~pt~ 59 (169)
+|+||||+|..|.|+||+++.++|+++|++|.. ||..|++.++.++.++.|++.
T Consensus 115 Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~~Tv 169 (204)
T PTZ00062 115 ILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSNWPTY 169 (204)
T ss_pred EEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCCCCC
Confidence 689999999999999999999999999999998 999999888888888888764
No 39
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=98.87 E-value=1.1e-08 Score=64.66 Aligned_cols=68 Identities=18% Similarity=0.071 Sum_probs=56.3
Q ss_pred EEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914 77 MLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM 149 (169)
Q Consensus 77 vly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~ 149 (169)
.+|+. +.||+|.+++.+|+..+++|+.+++..++....++++.++..++|.+.++|..+++...+.+.
T Consensus 2 ~ly~~-----~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~es~~I~~y 69 (71)
T cd00570 2 KLYYF-----PGSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPLGKVPVLEDGGLVLTESLAILEY 69 (71)
T ss_pred EEEeC-----CCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHH
Confidence 47777 689999999999999999999998876443223677888999999999999999988766553
No 40
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=98.84 E-value=3.2e-08 Score=65.37 Aligned_cols=68 Identities=16% Similarity=0.336 Sum_probs=53.8
Q ss_pred CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeC----CeEeeccHHHHHHH
Q 030914 75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIK----GEFIGGSDIILNMH 150 (169)
Q Consensus 75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~----g~~iGG~d~l~~~~ 150 (169)
++.||+. +.||+|++++.+|.+.|++|+.++++. ..+..+ +.++..++|++.++ |..+.....+.+..
T Consensus 1 ~i~Ly~~-----~~~p~c~kv~~~L~~~gi~y~~~~~~~--~~~~~~-~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL 72 (77)
T cd03040 1 KITLYQY-----KTCPFCCKVRAFLDYHGIPYEVVEVNP--VSRKEI-KWSSYKKVPILRVESGGDGQQLVDSSVIISTL 72 (77)
T ss_pred CEEEEEc-----CCCHHHHHHHHHHHHCCCceEEEECCc--hhHHHH-HHhCCCccCEEEECCCCCccEEEcHHHHHHHH
Confidence 4788988 689999999999999999999999853 223445 34788899999987 67777776666543
No 41
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=98.81 E-value=3.7e-08 Score=64.10 Aligned_cols=67 Identities=22% Similarity=0.295 Sum_probs=53.9
Q ss_pred EEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeC-CeEeeccHHHHHHH
Q 030914 77 MLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIK-GEFIGGSDIILNMH 150 (169)
Q Consensus 77 vly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~-g~~iGG~d~l~~~~ 150 (169)
.||.. +.||+|.+++-+|...|++|+.+.++..+.. ...+.++..++|.++++ |..+++...+.+..
T Consensus 2 ~Ly~~-----~~~p~~~rvr~~L~~~gl~~~~~~~~~~~~~--~~~~~~~~~~vP~L~~~~~~~l~es~aI~~yL 69 (71)
T cd03037 2 KLYIY-----EHCPFCVKARMIAGLKNIPVEQIILQNDDEA--TPIRMIGAKQVPILEKDDGSFMAESLDIVAFI 69 (71)
T ss_pred ceEec-----CCCcHhHHHHHHHHHcCCCeEEEECCCCchH--HHHHhcCCCccCEEEeCCCeEeehHHHHHHHH
Confidence 46776 6899999999999999999999988754322 22356778899999997 88999988877654
No 42
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.64 E-value=6.6e-09 Score=72.49 Aligned_cols=51 Identities=22% Similarity=0.331 Sum_probs=41.9
Q ss_pred hhhhccCCCCCCCCcchHHHHHHHHhCCCCccc-ccCCCccccCCCCCcccc
Q 030914 6 SNLIFKGIASYPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKV 56 (169)
Q Consensus 6 ~~~~~kg~~~~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~~~~~k~~s~~ 56 (169)
+++||||+++.|.|+|+.++.++|.+.|++|.. |+..+++.+..++..+.|
T Consensus 14 Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~ 65 (97)
T TIGR00365 14 VVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNW 65 (97)
T ss_pred EEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCC
Confidence 689999999999999999999999999999988 888776554444444433
No 43
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=98.64 E-value=3.5e-08 Score=70.42 Aligned_cols=45 Identities=27% Similarity=0.431 Sum_probs=39.2
Q ss_pred eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhc
Q 030914 76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFS 125 (169)
Q Consensus 76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~ 125 (169)
|.||++ ++|++|++|+++|+++|++|+.+|+..++..+++|.++.
T Consensus 1 i~iY~~-----~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~~~ 45 (111)
T cd03036 1 LKFYEY-----PKCSTCRKAKKWLDEHGVDYTAIDIVEEPPSKEELKKWL 45 (111)
T ss_pred CEEEEC-----CCCHHHHHHHHHHHHcCCceEEecccCCcccHHHHHHHH
Confidence 578998 799999999999999999999999998877676666544
No 44
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.59 E-value=1.7e-07 Score=64.39 Aligned_cols=70 Identities=19% Similarity=0.171 Sum_probs=54.8
Q ss_pred HHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcC-----CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCC
Q 030914 63 LKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAY-----NVPISARNILEDPELKSAVKAFSHWPTFPQIFIKG 137 (169)
Q Consensus 63 ~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~-----~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g 137 (169)
..+.++++.+.-.|.+|+. ++|++|..+.+++++. ++++..+|++..++.. +..|-..+|.+++||
T Consensus 3 ~~~~~~~l~~pv~i~~F~~-----~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a----~~~~V~~vPt~vidG 73 (89)
T cd03026 3 LLEQIRRLNGPINFETYVS-----LSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEV----EERGIMSVPAIFLNG 73 (89)
T ss_pred HHHHHHhcCCCEEEEEEEC-----CCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHH----HHcCCccCCEEEECC
Confidence 4567777666667889988 7899999998887654 6889999998776543 345678899999999
Q ss_pred eEee
Q 030914 138 EFIG 141 (169)
Q Consensus 138 ~~iG 141 (169)
+.++
T Consensus 74 ~~~~ 77 (89)
T cd03026 74 ELFG 77 (89)
T ss_pred EEEE
Confidence 8765
No 45
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=98.55 E-value=4.9e-07 Score=61.70 Aligned_cols=70 Identities=24% Similarity=0.212 Sum_probs=56.8
Q ss_pred CCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeC-CeEeeccHHHHHH
Q 030914 74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIK-GEFIGGSDIILNM 149 (169)
Q Consensus 74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~-g~~iGG~d~l~~~ 149 (169)
..+.+|+. +.||+|.+++.+|...|++|+.++++... ..+++.+.++..++|.+.++ |..+.....+.+.
T Consensus 17 ~~~~Ly~~-----~~sp~~~kv~~~L~~~gl~~~~~~v~~~~-~~~~~~~~np~~~vPvL~~~~g~~l~eS~aI~~y 87 (89)
T cd03055 17 GIIRLYSM-----RFCPYAQRARLVLAAKNIPHEVININLKD-KPDWFLEKNPQGKVPALEIDEGKVVYESLIICEY 87 (89)
T ss_pred CcEEEEeC-----CCCchHHHHHHHHHHcCCCCeEEEeCCCC-CcHHHHhhCCCCCcCEEEECCCCEEECHHHHHHh
Confidence 45889988 68999999999999999999998886532 23457778888999999998 7888777666554
No 46
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=98.55 E-value=5.1e-07 Score=58.61 Aligned_cols=68 Identities=19% Similarity=0.252 Sum_probs=53.6
Q ss_pred eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914 76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM 149 (169)
Q Consensus 76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~ 149 (169)
++||+. +.||+|.+++.+|+..|++|+.++++... ...++++.+...++|.+..+|..+.....+.+.
T Consensus 1 ~~ly~~-----~~~~~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~y 68 (73)
T cd03059 1 MTLYSG-----PDDVYSHRVRIVLAEKGVSVEIIDVDPDN-PPEDLAELNPYGTVPTLVDRDLVLYESRIIMEY 68 (73)
T ss_pred CEEEEC-----CCChhHHHHHHHHHHcCCccEEEEcCCCC-CCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHH
Confidence 357877 68999999999999999999998886432 234667778888999998888877766655554
No 47
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=98.54 E-value=9.8e-08 Score=67.14 Aligned_cols=46 Identities=22% Similarity=0.369 Sum_probs=39.7
Q ss_pred eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcC
Q 030914 76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSH 126 (169)
Q Consensus 76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g 126 (169)
|+||++ ++|++|++|+++|+++|++|+++||..++..++++.++.+
T Consensus 1 i~iY~~-----~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~~l~~~~~ 46 (105)
T cd02977 1 ITIYGN-----PNCSTSRKALAWLEEHGIEYEFIDYLKEPPTKEELKELLA 46 (105)
T ss_pred CEEEEC-----CCCHHHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHH
Confidence 578998 7899999999999999999999999887766666666654
No 48
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=98.53 E-value=5.2e-07 Score=58.70 Aligned_cols=66 Identities=21% Similarity=0.240 Sum_probs=52.3
Q ss_pred EEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeC-CeEeeccHHHHH
Q 030914 77 MLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIK-GEFIGGSDIILN 148 (169)
Q Consensus 77 vly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~-g~~iGG~d~l~~ 148 (169)
++|+. ++||+|.+++.+|.++|++|+.++++.... ..++++.++..++|.+..+ |..+.....+.+
T Consensus 2 ~ly~~-----~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~-~~~~~~~np~~~vP~L~~~~g~~l~eS~aI~~ 68 (71)
T cd03060 2 ILYSF-----RRCPYAMRARMALLLAGITVELREVELKNK-PAEMLAASPKGTVPVLVLGNGTVIEESLDIMR 68 (71)
T ss_pred EEEec-----CCCcHHHHHHHHHHHcCCCcEEEEeCCCCC-CHHHHHHCCCCCCCEEEECCCcEEecHHHHHH
Confidence 57776 689999999999999999999988865322 3567788889999999996 887766554443
No 49
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=98.51 E-value=2.4e-08 Score=68.53 Aligned_cols=43 Identities=28% Similarity=0.373 Sum_probs=38.2
Q ss_pred hhhhhccCCCCCCCCcchHHHHHHHHhCCCCccc-ccCCCcccc
Q 030914 5 LSNLIFKGIASYPSARSSRIVSGSLYHNGMKYST-DVPNDPDTH 47 (169)
Q Consensus 5 ~~~~~~kg~~~~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~~ 47 (169)
=+++||||+|+.|.|+|+.++.++|...|++|.. |+..|++.+
T Consensus 9 ~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~ 52 (90)
T cd03028 9 PVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVR 52 (90)
T ss_pred CEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHH
Confidence 3689999999999999999999999999999988 988765443
No 50
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=98.50 E-value=8.5e-07 Score=57.78 Aligned_cols=68 Identities=18% Similarity=0.160 Sum_probs=54.4
Q ss_pred EEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCC--CHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914 77 MLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILE--DPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM 149 (169)
Q Consensus 77 vly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~--~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~ 149 (169)
.||+. +.||+|++++-+|.+.|++|+.++++. ++..+.++.+.+...++|.+..+|..+.....+...
T Consensus 2 ~Ly~~-----~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~y 71 (74)
T cd03045 2 DLYYL-----PGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDNGFVLWESHAILIY 71 (74)
T ss_pred EEEeC-----CCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEECCEEEEcHHHHHHH
Confidence 57877 789999999999999999999888863 444567788888888999999888776665555443
No 51
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=98.46 E-value=5.2e-07 Score=59.45 Aligned_cols=67 Identities=16% Similarity=0.217 Sum_probs=56.8
Q ss_pred EEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHHH
Q 030914 78 LYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMH 150 (169)
Q Consensus 78 ly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~~ 150 (169)
||.. +.||+|.++.-+|+..||+|+.+++..... +..+.+.++..++|.+..||..+.+...+.+..
T Consensus 1 Ly~~-----~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~-~~~~~~~~p~~~vPvL~~~g~~l~dS~~I~~yL 67 (75)
T PF13417_consen 1 LYGF-----PGSPYSQKVRLALEEKGIPYELVPVDPEEK-RPEFLKLNPKGKVPVLVDDGEVLTDSAAIIEYL 67 (75)
T ss_dssp EEEE-----TTSHHHHHHHHHHHHHTEEEEEEEEBTTST-SHHHHHHSTTSBSSEEEETTEEEESHHHHHHHH
T ss_pred CCCc-----CCChHHHHHHHHHHHcCCeEEEeccCcccc-hhHHHhhcccccceEEEECCEEEeCHHHHHHHH
Confidence 4665 689999999999999999999999875443 677888899999999999999999877766653
No 52
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=98.46 E-value=3.7e-07 Score=67.06 Aligned_cols=42 Identities=29% Similarity=0.492 Sum_probs=36.4
Q ss_pred eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHH
Q 030914 76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVK 122 (169)
Q Consensus 76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~ 122 (169)
|.||++ |+|++|++|+++|+++||+|+.+|+..++..+++|.
T Consensus 2 i~iY~~-----~~C~~C~ka~~~L~~~gi~~~~idi~~~~~~~~eL~ 43 (131)
T PRK01655 2 VTLFTS-----PSCTSCRKAKAWLEEHDIPFTERNIFSSPLTIDEIK 43 (131)
T ss_pred EEEEeC-----CCChHHHHHHHHHHHcCCCcEEeeccCChhhHHHHH
Confidence 679998 899999999999999999999999988765555443
No 53
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=98.43 E-value=1.1e-06 Score=56.90 Aligned_cols=67 Identities=16% Similarity=0.098 Sum_probs=51.5
Q ss_pred EEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCC--CHHHHHHHHHhcCCCCCcEEEe-CCeEeeccHHHHH
Q 030914 77 MLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILE--DPELKSAVKAFSHWPTFPQIFI-KGEFIGGSDIILN 148 (169)
Q Consensus 77 vly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~--~~~~~~~l~~~~g~~t~P~vfi-~g~~iGG~d~l~~ 148 (169)
.||+. +.||+|++++-+|...|++|+.+.++. +.....++.+.++..++|.+.+ +|..+.....+..
T Consensus 2 ~Ly~~-----~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~~l~es~aI~~ 71 (74)
T cd03051 2 KLYDS-----PTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELDDGTVITESVAICR 71 (74)
T ss_pred EEEeC-----CCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEeCCCCEEecHHHHHH
Confidence 57877 789999999999999999998887763 2233456778888899999997 5566665554443
No 54
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.43 E-value=1.5e-06 Score=57.43 Aligned_cols=55 Identities=25% Similarity=0.480 Sum_probs=43.2
Q ss_pred CeEEEeecCCCCCCCccHHHHHHHHhc----CC--CCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCe
Q 030914 75 PVMLYMKGVPEFPQCGFSSLAVRVLGA----YN--VPISARNILEDPELKSAVKAFSHWPTFPQIFIKGE 138 (169)
Q Consensus 75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~----~~--v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~ 138 (169)
.|++|+. ++||+|..++..|++ ++ +.+..+|+..+++.. +..|-.++|+++++|+
T Consensus 2 ~v~~f~~-----~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~----~~~~v~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTS-----PTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKA----MEYGIMAVPAIVINGD 62 (82)
T ss_pred EEEEEEC-----CCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHH----HHcCCccCCEEEECCE
Confidence 4788998 799999999999864 34 567788887776543 3467889999999997
No 55
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.42 E-value=1.8e-06 Score=55.81 Aligned_cols=67 Identities=18% Similarity=0.175 Sum_probs=54.1
Q ss_pred EEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCC--CHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHH
Q 030914 77 MLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILE--DPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILN 148 (169)
Q Consensus 77 vly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~--~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~ 148 (169)
.+|.. +.||+|.+++-+|...|++|+.++++. ++...+.+.+.+...++|.+..+|..+.....+.+
T Consensus 2 ~Ly~~-----~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~i~es~aI~~ 70 (73)
T cd03056 2 KLYGF-----PLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLELDGRVLAESNAILV 70 (73)
T ss_pred EEEeC-----CCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEECCEEEEcHHHHHH
Confidence 57776 789999999999999999999988863 33445667778888899999999988877665544
No 56
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=98.34 E-value=3.6e-06 Score=56.59 Aligned_cols=53 Identities=30% Similarity=0.455 Sum_probs=42.6
Q ss_pred CeEEEeecCCCCCCCccHHHHHHHHhcCC----CCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCC
Q 030914 75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYN----VPISARNILEDPELKSAVKAFSHWPTFPQIFIKG 137 (169)
Q Consensus 75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~----v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g 137 (169)
+|++|++ |+|+.|..|+.+|.... +.++.+||+.|+++ .+..+ ..+|++.++|
T Consensus 1 ~l~l~~k-----~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~l----~~~Y~-~~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTK-----PGCHLCDEAKEILEEVAAEFPFELEEVDIDEDPEL----FEKYG-YRIPVLHIDG 57 (81)
T ss_dssp -EEEEE------SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHHH----HHHSC-TSTSEEEETT
T ss_pred CEEEEcC-----CCCChHHHHHHHHHHHHhhcCceEEEEECCCCHHH----HHHhc-CCCCEEEEcC
Confidence 4789999 89999999999998654 56889999988884 33444 5899999999
No 57
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=98.32 E-value=1.2e-06 Score=62.83 Aligned_cols=44 Identities=23% Similarity=0.282 Sum_probs=38.5
Q ss_pred eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHh
Q 030914 76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAF 124 (169)
Q Consensus 76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~ 124 (169)
|.||+. ++|++|++|+++|+++|++|+.+|+..++.-++++.++
T Consensus 1 i~iY~~-----~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~l 44 (117)
T TIGR01617 1 IKVYGS-----PNCTTCKKARRWLEANGIEYQFIDIGEDGPTREELLDI 44 (117)
T ss_pred CEEEeC-----CCCHHHHHHHHHHHHcCCceEEEecCCChhhHHHHHHH
Confidence 468988 78999999999999999999999999887777766654
No 58
>KOG4023 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.31 E-value=1.8e-06 Score=59.90 Aligned_cols=89 Identities=18% Similarity=0.236 Sum_probs=68.3
Q ss_pred CeEEEeecCC-CCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHH--------HHhcCCCCCcEEEeCCeEeeccHH
Q 030914 75 PVMLYMKGVP-EFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAV--------KAFSHWPTFPQIFIKGEFIGGSDI 145 (169)
Q Consensus 75 ~Vvly~k~~~-~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l--------~~~~g~~t~P~vfi~g~~iGG~d~ 145 (169)
.|.+|+++.+ ...-=.-=.+++.+|+...+.++.+||...++.+.++ +-..|.+.-||||-+++|.|++|.
T Consensus 3 ~irvyvasssg~~eik~kqqevv~~Ld~~ki~fk~~di~~~e~~~~~~~~~~~~e~r~~~GnplPPqifn~d~Y~Gdye~ 82 (108)
T KOG4023|consen 3 VIRVYVASSSGSTEIKKKQQEVVRFLDANKIGFKEIDITAYEEVRQWMDNNVPDEKRPLNGNPLPPQIFNGDQYCGDYEL 82 (108)
T ss_pred ceEEEEecCCCchHHHhhhhhhhhhhhcccCCcceeeccchhhhHHHHHhcCChhhcCCCCCCCCcccccCccccccHHH
Confidence 4667877542 1111111236778999999999999998877666554 444688999999999999999999
Q ss_pred HHHHHhcccHHHHHhccc
Q 030914 146 ILNMHQSGELKEKLKGIA 163 (169)
Q Consensus 146 l~~~~~~g~L~~~L~~~~ 163 (169)
..+..+.+.|.+.|+-+.
T Consensus 83 F~ea~E~ntl~eFL~lap 100 (108)
T KOG4023|consen 83 FFEAVEQNTLQEFLGLAP 100 (108)
T ss_pred HHHHHHHHHHHHHHccCC
Confidence 999999999999997553
No 59
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=98.30 E-value=1.5e-06 Score=62.18 Aligned_cols=44 Identities=27% Similarity=0.525 Sum_probs=37.4
Q ss_pred eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHh
Q 030914 76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAF 124 (169)
Q Consensus 76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~ 124 (169)
|.||+. ++|++|++|+++|+++|++|+.+|+..++.-+++|+++
T Consensus 2 i~iY~~-----~~C~~c~ka~~~L~~~gi~~~~idi~~~~~~~~el~~~ 45 (115)
T cd03032 2 IKLYTS-----PSCSSCRKAKQWLEEHQIPFEERNLFKQPLTKEELKEI 45 (115)
T ss_pred EEEEeC-----CCCHHHHHHHHHHHHCCCceEEEecCCCcchHHHHHHH
Confidence 678988 78999999999999999999999998876555555544
No 60
>PRK12559 transcriptional regulator Spx; Provisional
Probab=98.21 E-value=2.2e-06 Score=62.97 Aligned_cols=35 Identities=23% Similarity=0.402 Sum_probs=32.4
Q ss_pred eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCH
Q 030914 76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDP 115 (169)
Q Consensus 76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~ 115 (169)
|+||+. |+|+.|++|+++|+++|++|+.+|+..++
T Consensus 2 i~iY~~-----~~C~~crkA~~~L~~~gi~~~~~di~~~~ 36 (131)
T PRK12559 2 VVLYTT-----ASCASCRKAKAWLEENQIDYTEKNIVSNS 36 (131)
T ss_pred EEEEeC-----CCChHHHHHHHHHHHcCCCeEEEEeeCCc
Confidence 679998 89999999999999999999999998754
No 61
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.14 E-value=1.1e-05 Score=57.53 Aligned_cols=61 Identities=10% Similarity=0.195 Sum_probs=44.8
Q ss_pred HHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCC-----CCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe
Q 030914 67 VEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYN-----VPISARNILEDPELKSAVKAFSHWPTFPQIFI 135 (169)
Q Consensus 67 i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~-----v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi 135 (169)
.+++.+..++++|... +|||+|+.++.+|++.. +.+..+|++.+++ +.+..+-.++|.+++
T Consensus 16 ~~~l~~~~~vvv~f~a----~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~----l~~~~~v~~vPt~~i 81 (113)
T cd02975 16 FKEMKNPVDLVVFSSK----EGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKE----KAEKYGVERVPTTIF 81 (113)
T ss_pred HHHhCCCeEEEEEeCC----CCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHH----HHHHcCCCcCCEEEE
Confidence 3445555667777432 79999999999886553 5688889887764 445567899999988
No 62
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=98.14 E-value=3.8e-06 Score=61.83 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=32.1
Q ss_pred eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCH
Q 030914 76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDP 115 (169)
Q Consensus 76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~ 115 (169)
|.||+. |+|+.|++|+++|+++||+|+.+|+..++
T Consensus 2 i~iY~~-----~~C~~crkA~~~L~~~~i~~~~~d~~~~~ 36 (132)
T PRK13344 2 IKIYTI-----SSCTSCKKAKTWLNAHQLSYKEQNLGKEP 36 (132)
T ss_pred EEEEeC-----CCCHHHHHHHHHHHHcCCCeEEEECCCCC
Confidence 679988 79999999999999999999999998654
No 63
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=98.11 E-value=3.9e-06 Score=59.35 Aligned_cols=43 Identities=19% Similarity=0.182 Sum_probs=35.6
Q ss_pred eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHH
Q 030914 76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKA 123 (169)
Q Consensus 76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~ 123 (169)
|.||+. |+|+.|++|+++|+++|++|+.+|+..++--.++|..
T Consensus 1 i~iy~~-----~~C~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~~ 43 (105)
T cd03035 1 ITLYGI-----KNCDTVKKARKWLEARGVAYTFHDYRKDGLDAATLER 43 (105)
T ss_pred CEEEeC-----CCCHHHHHHHHHHHHcCCCeEEEecccCCCCHHHHHH
Confidence 578988 8999999999999999999999999886543444433
No 64
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.10 E-value=1.4e-05 Score=53.01 Aligned_cols=49 Identities=10% Similarity=0.287 Sum_probs=38.4
Q ss_pred CCCccHHHH----HHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEe
Q 030914 87 PQCGFSSLA----VRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFI 140 (169)
Q Consensus 87 ~~C~~c~~a----~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~i 140 (169)
+|||.|+.+ .+++++++++++.++|+..++ ..+ .|-.++|.+++||+.+
T Consensus 8 ~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~~~----a~~-~~v~~vPti~i~G~~~ 60 (76)
T TIGR00412 8 TGCANCQMTEKNVKKAVEELGIDAEFEKVTDMNE----ILE-AGVTATPGVAVDGELV 60 (76)
T ss_pred CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCCHHH----HHH-cCCCcCCEEEECCEEE
Confidence 489999999 668888999999999973222 222 4789999999999755
No 65
>PHA02125 thioredoxin-like protein
Probab=98.10 E-value=1.3e-05 Score=52.88 Aligned_cols=56 Identities=13% Similarity=0.199 Sum_probs=39.0
Q ss_pred eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEee
Q 030914 76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIG 141 (169)
Q Consensus 76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iG 141 (169)
|++|+. +||+.|+.++.+|++..+.+-.+|.+.++ ++.+..+-.++|.+. +|+.++
T Consensus 2 iv~f~a-----~wC~~Ck~~~~~l~~~~~~~~~vd~~~~~----~l~~~~~v~~~PT~~-~g~~~~ 57 (75)
T PHA02125 2 IYLFGA-----EWCANCKMVKPMLANVEYTYVDVDTDEGV----ELTAKHHIRSLPTLV-NTSTLD 57 (75)
T ss_pred EEEEEC-----CCCHhHHHHHHHHHHHhheEEeeeCCCCH----HHHHHcCCceeCeEE-CCEEEE
Confidence 678887 79999999999998654444444443433 455556788999976 776443
No 66
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=98.09 E-value=6.3e-06 Score=67.35 Aligned_cols=60 Identities=22% Similarity=0.439 Sum_probs=51.4
Q ss_pred CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeec
Q 030914 75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGG 142 (169)
Q Consensus 75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG 142 (169)
+++||.. ..||||.+++.+|+-+|++|..+.|. |-.|++++ +|..+.+|.+.+.|+-.-.
T Consensus 90 ~l~LyQy-----etCPFCcKVrAFLDyhgisY~VVEVn--pV~r~eIk-~SsykKVPil~~~Geqm~d 149 (370)
T KOG3029|consen 90 DLVLYQY-----ETCPFCCKVRAFLDYHGISYAVVEVN--PVLRQEIK-WSSYKKVPILLIRGEQMVD 149 (370)
T ss_pred eEEEEee-----ccCchHHHHHHHHhhcCCceEEEEec--chhhhhcc-ccccccccEEEeccceech
Confidence 7999988 56999999999999999999999884 77888874 6778899999998874433
No 67
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=98.07 E-value=4.1e-05 Score=52.86 Aligned_cols=75 Identities=16% Similarity=0.212 Sum_probs=57.8
Q ss_pred CeEEEeecCC---CCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHHH
Q 030914 75 PVMLYMKGVP---EFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMH 150 (169)
Q Consensus 75 ~Vvly~k~~~---~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~~ 150 (169)
.+.+|.|... ....||||++++-+|.+.|++|+.++|+.... -+.+.+.+-...+|.+..+|..|...+.+.+..
T Consensus 5 ~~el~vka~~~~~~~g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~-p~~~~~~nP~g~vPvL~~~~~~i~eS~~I~eYL 82 (91)
T cd03061 5 EIELFVKASSDGESIGNCPFCQRLFMVLWLKGVVFNVTTVDMKRK-PEDLKDLAPGTQPPFLLYNGEVKTDNNKIEEFL 82 (91)
T ss_pred cEEEEEEeccCCCCCCCChhHHHHHHHHHHCCCceEEEEeCCCCC-CHHHHHhCCCCCCCEEEECCEEecCHHHHHHHH
Confidence 4667776544 24679999999999999999999888864321 144777787789999998888888877777654
No 68
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=98.06 E-value=3.1e-05 Score=50.26 Aligned_cols=56 Identities=16% Similarity=0.035 Sum_probs=47.6
Q ss_pred CCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHHH
Q 030914 87 PQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMH 150 (169)
Q Consensus 87 ~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~~ 150 (169)
..||+|.+++.+|+..|++|+.++++... .+...++|.+..+|..+.++..+.+..
T Consensus 14 s~sp~~~~v~~~L~~~~i~~~~~~~~~~~--------~~p~g~vP~l~~~g~~l~es~~I~~yL 69 (72)
T cd03054 14 SLSPECLKVETYLRMAGIPYEVVFSSNPW--------RSPTGKLPFLELNGEKIADSEKIIEYL 69 (72)
T ss_pred CCCHHHHHHHHHHHhCCCceEEEecCCcc--------cCCCcccCEEEECCEEEcCHHHHHHHH
Confidence 47999999999999999999999987532 456679999999999999888776654
No 69
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=98.04 E-value=7.2e-06 Score=58.76 Aligned_cols=37 Identities=24% Similarity=0.495 Sum_probs=33.3
Q ss_pred CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHH
Q 030914 75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPE 116 (169)
Q Consensus 75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~ 116 (169)
.|+||+. |.|+.|++|+++|+++|++|+.+|+..++-
T Consensus 1 ~i~iy~~-----p~C~~crkA~~~L~~~gi~~~~~d~~~~p~ 37 (113)
T cd03033 1 DIIFYEK-----PGCANNARQKALLEAAGHEVEVRDLLTEPW 37 (113)
T ss_pred CEEEEEC-----CCCHHHHHHHHHHHHcCCCcEEeehhcCCC
Confidence 3789998 899999999999999999999999987653
No 70
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=98.01 E-value=5e-05 Score=49.57 Aligned_cols=70 Identities=11% Similarity=-0.053 Sum_probs=55.5
Q ss_pred eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCC--HHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHHH
Q 030914 76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILED--PELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMH 150 (169)
Q Consensus 76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~--~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~~ 150 (169)
+.+|.. +.||+|.+++-+|...|++|+.+.++.. +...+.+++.+...++|.+..+|..+.....+.+..
T Consensus 2 ~~Ly~~-----~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~~g~~l~es~aI~~yL 73 (76)
T cd03053 2 LKLYGA-----AMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALEDGDLKLFESRAITRYL 73 (76)
T ss_pred eEEEeC-----CCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHH
Confidence 467877 6899999999999999999998877642 233456778888899999998888887776666553
No 71
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=97.97 E-value=6.2e-05 Score=49.07 Aligned_cols=67 Identities=18% Similarity=0.047 Sum_probs=50.3
Q ss_pred EEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcC-CCCCcEEEeCCeEeeccHHHHHH
Q 030914 77 MLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSH-WPTFPQIFIKGEFIGGSDIILNM 149 (169)
Q Consensus 77 vly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g-~~t~P~vfi~g~~iGG~d~l~~~ 149 (169)
.+|.. +.||+|.+++-+|...|++|+.++++.. ....++++.+. ..++|.+..+|.-+.....+.+.
T Consensus 2 ~Ly~~-----~~sp~~~~v~~~l~~~gl~~~~~~~~~~-~~~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~y 69 (74)
T cd03058 2 KLLGA-----WASPFVLRVRIALALKGVPYEYVEEDLG-NKSELLLASNPVHKKIPVLLHNGKPICESLIIVEY 69 (74)
T ss_pred EEEEC-----CCCchHHHHHHHHHHcCCCCEEEEeCcc-cCCHHHHHhCCCCCCCCEEEECCEEeehHHHHHHH
Confidence 46766 6799999999999999999999877643 12234556665 47999999888777776665554
No 72
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=97.96 E-value=5.3e-05 Score=49.75 Aligned_cols=69 Identities=12% Similarity=0.061 Sum_probs=53.7
Q ss_pred eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCC--HHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914 76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILED--PELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM 149 (169)
Q Consensus 76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~--~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~ 149 (169)
+.+|.. +.|++|.+++-+|.++|++|+.+.++.. .....++.+.+...++|.+..||..+.....+.+.
T Consensus 1 ~~ly~~-----~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~~g~~l~Es~aI~~y 71 (73)
T cd03052 1 LVLYHW-----TQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIHGDNIICDPTQIIDY 71 (73)
T ss_pred CEEecC-----CCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHH
Confidence 356766 6899999999999999999998887542 22345688888899999999888877766655543
No 73
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=97.90 E-value=0.00012 Score=47.80 Aligned_cols=69 Identities=14% Similarity=0.069 Sum_probs=54.4
Q ss_pred eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHHH
Q 030914 76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMH 150 (169)
Q Consensus 76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~~ 150 (169)
+.+|.. +.|+.|++++-+|...|++|+.+.++. ....++++..+...++|.+..+|..+.....+....
T Consensus 2 ~~Ly~~-----~~~~~~~~v~~~L~~~~i~~e~~~v~~-~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL 70 (73)
T cd03076 2 YTLTYF-----PVRGRAEAIRLLLADQGISWEEERVTY-EEWQESLKPKMLFGQLPCFKDGDLTLVQSNAILRHL 70 (73)
T ss_pred cEEEEe-----CCcchHHHHHHHHHHcCCCCEEEEecH-HHhhhhhhccCCCCCCCEEEECCEEEEcHHHHHHHH
Confidence 567766 569999999999999999999998864 233445777777889999999998888776666543
No 74
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=97.89 E-value=0.00012 Score=52.92 Aligned_cols=73 Identities=11% Similarity=0.193 Sum_probs=44.3
Q ss_pred HHHHHhhc-CCeEEEeecCCCCCCCccHHHHHHHH----hcCCCCeEEEEcCCCH--------HHHHHHHHhcC----CC
Q 030914 66 VVEQDVKE-NPVMLYMKGVPEFPQCGFSSLAVRVL----GAYNVPISARNILEDP--------ELKSAVKAFSH----WP 128 (169)
Q Consensus 66 ~i~~~~~~-~~Vvly~k~~~~~~~C~~c~~a~~~L----~~~~v~~~~~di~~~~--------~~~~~l~~~~g----~~ 128 (169)
.+.+.+++ ..+++|... +|||+|+.+.-.| ++.++++-.+|++.++ ++. ++.+..+ -.
T Consensus 15 ~~~~~i~~~~~~iv~f~~----~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~-~~~~~~~i~~~i~ 89 (122)
T TIGR01295 15 RALEALDKKETATFFIGR----KTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLT-AFRSRFGIPTSFM 89 (122)
T ss_pred HHHHHHHcCCcEEEEEEC----CCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHH-HHHHHcCCcccCC
Confidence 34444444 444554432 7999999976655 4556888899998653 222 3333333 34
Q ss_pred CCcEE--EeCCeEeecc
Q 030914 129 TFPQI--FIKGEFIGGS 143 (169)
Q Consensus 129 t~P~v--fi~g~~iGG~ 143 (169)
.+|.+ |-+|+.++..
T Consensus 90 ~~PT~v~~k~Gk~v~~~ 106 (122)
T TIGR01295 90 GTPTFVHITDGKQVSVR 106 (122)
T ss_pred CCCEEEEEeCCeEEEEE
Confidence 58988 5588766654
No 75
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.86 E-value=4e-05 Score=67.84 Aligned_cols=74 Identities=15% Similarity=0.136 Sum_probs=54.9
Q ss_pred CcccHHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcC-----CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEE
Q 030914 59 SGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAY-----NVPISARNILEDPELKSAVKAFSHWPTFPQI 133 (169)
Q Consensus 59 ~~~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~-----~v~~~~~di~~~~~~~~~l~~~~g~~t~P~v 133 (169)
.+++..++|+++-++..|.+|.+ +.||+|.++++.+++. .|..+.+|....+++.+ ..+..++|++
T Consensus 103 l~~~~~~~i~~~~~~~~i~~fv~-----~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~----~~~v~~VP~~ 173 (517)
T PRK15317 103 LDQEVIEQIKALDGDFHFETYVS-----LSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVE----ARNIMAVPTV 173 (517)
T ss_pred CCHHHHHHHHhcCCCeEEEEEEc-----CCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHH----hcCCcccCEE
Confidence 33455677777777778999998 7899999999988655 35566666666666433 4467799999
Q ss_pred EeCCeEee
Q 030914 134 FIKGEFIG 141 (169)
Q Consensus 134 fi~g~~iG 141 (169)
||||+.+.
T Consensus 174 ~i~~~~~~ 181 (517)
T PRK15317 174 FLNGEEFG 181 (517)
T ss_pred EECCcEEE
Confidence 99998654
No 76
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=97.85 E-value=8.4e-05 Score=51.52 Aligned_cols=66 Identities=12% Similarity=0.107 Sum_probs=43.0
Q ss_pred HHHHHhhcCC-eEEEeecCCCCCCCccHHHHHHHH-------hcC--CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe
Q 030914 66 VVEQDVKENP-VMLYMKGVPEFPQCGFSSLAVRVL-------GAY--NVPISARNILEDPELKSAVKAFSHWPTFPQIFI 135 (169)
Q Consensus 66 ~i~~~~~~~~-Vvly~k~~~~~~~C~~c~~a~~~L-------~~~--~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi 135 (169)
.+++++++++ |+|+..+ +||++|++....+ +.. ++.+..+|++.+......+.+..+..++|.+++
T Consensus 3 ~~~~~~~~~k~vlv~f~a----~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~ 78 (104)
T cd02953 3 ALAQALAQGKPVFVDFTA----DWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLF 78 (104)
T ss_pred HHHHHHHcCCeEEEEEEc----chhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEE
Confidence 3455565555 4444443 7999999887543 111 566777888776555566777778899998754
No 77
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.84 E-value=4.8e-05 Score=67.38 Aligned_cols=73 Identities=11% Similarity=0.066 Sum_probs=53.5
Q ss_pred cccHHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCC-----CCeEEEEcCCCHHHHHHHHHhcCCCCCcEEE
Q 030914 60 GLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYN-----VPISARNILEDPELKSAVKAFSHWPTFPQIF 134 (169)
Q Consensus 60 ~~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~-----v~~~~~di~~~~~~~~~l~~~~g~~t~P~vf 134 (169)
+++..+.|+++-+...|.+|.+ +.||+|.+|++.+++.. |..+.+|....+++ .+..+..++|++|
T Consensus 105 ~~~~~~~~~~~~~~~~i~~f~~-----~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~----~~~~~v~~VP~~~ 175 (515)
T TIGR03140 105 DEGIIDRIRRLNGPLHFETYVS-----LTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDE----VEALGIQGVPAVF 175 (515)
T ss_pred CHHHHHHHHhcCCCeEEEEEEe-----CCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHH----HHhcCCcccCEEE
Confidence 3455677777767778999999 78999999999887654 44555565555554 3344667999999
Q ss_pred eCCeEee
Q 030914 135 IKGEFIG 141 (169)
Q Consensus 135 i~g~~iG 141 (169)
|||+.++
T Consensus 176 i~~~~~~ 182 (515)
T TIGR03140 176 LNGEEFH 182 (515)
T ss_pred ECCcEEE
Confidence 9998664
No 78
>PHA02278 thioredoxin-like protein
Probab=97.82 E-value=0.00017 Score=50.67 Aligned_cols=66 Identities=14% Similarity=0.311 Sum_probs=44.6
Q ss_pred hcCCeEEEeecCCCCCCCccHHHHHHHHhcC------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEE--EeCCeEee
Q 030914 72 KENPVMLYMKGVPEFPQCGFSSLAVRVLGAY------NVPISARNILEDPELKSAVKAFSHWPTFPQI--FIKGEFIG 141 (169)
Q Consensus 72 ~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~v--fi~g~~iG 141 (169)
+..+|+|+... +||+.|+.+...|++. .+++..+||+.++.....+.+..+-.++|.+ |-||+.++
T Consensus 13 ~~~~vvV~F~A----~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~~v~ 86 (103)
T PHA02278 13 QKKDVIVMITQ----DNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQLVK 86 (103)
T ss_pred CCCcEEEEEEC----CCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECCEEEE
Confidence 46677777664 8999999888776443 2568888998763223335555566777776 55888653
No 79
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=97.82 E-value=0.00012 Score=47.13 Aligned_cols=67 Identities=18% Similarity=0.121 Sum_probs=51.4
Q ss_pred EEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCC--HHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHH
Q 030914 77 MLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILED--PELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILN 148 (169)
Q Consensus 77 vly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~--~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~ 148 (169)
.+|.. +.|++|.+++-+|...|++|+.+.++.. ......+.+.+...++|.+..+|..+.....+..
T Consensus 2 ~L~~~-----~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~ 70 (73)
T cd03042 2 ILYSY-----FRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVIDGLVLTQSLAIIE 70 (73)
T ss_pred EEecC-----CCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCCCCCEEEECCEEEEcHHHHHH
Confidence 46655 5789999999999999999998877642 2334567778888999999999887776655544
No 80
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=97.80 E-value=0.00016 Score=46.77 Aligned_cols=68 Identities=18% Similarity=0.091 Sum_probs=51.9
Q ss_pred EEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914 77 MLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM 149 (169)
Q Consensus 77 vly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~ 149 (169)
.||.. +.|+.|.+++-+|...|++|+.+.++........+.+.+...++|.+..+|..+.....+.+.
T Consensus 2 ~Ly~~-----~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~es~aI~~y 69 (72)
T cd03039 2 KLTYF-----NIRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLPFGQLPVLEIDGKKLTQSNAILRY 69 (72)
T ss_pred EEEEE-----cCcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCcCCCCCEEEECCEEEEecHHHHHH
Confidence 46655 579999999999999999999998864322223356677788999999998888776655544
No 81
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=97.79 E-value=0.00014 Score=49.95 Aligned_cols=59 Identities=19% Similarity=0.269 Sum_probs=41.4
Q ss_pred CeEEEeecCCCCCCCccHHHHHHHHhc------CCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--CCeEee
Q 030914 75 PVMLYMKGVPEFPQCGFSSLAVRVLGA------YNVPISARNILEDPELKSAVKAFSHWPTFPQIFI--KGEFIG 141 (169)
Q Consensus 75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~------~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~g~~iG 141 (169)
.|+++..+ +||+.|+.+...|++ .++.+..+|++.++++. ...+..++|.+++ +|+.++
T Consensus 15 ~vlv~f~a----~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~----~~~~v~~vPt~~i~~~g~~v~ 81 (97)
T cd02949 15 LILVLYTS----PTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIA----EAAGIMGTPTVQFFKDKELVK 81 (97)
T ss_pred eEEEEEEC----CCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHH----HHCCCeeccEEEEEECCeEEE
Confidence 34444443 799999999988865 34778888988777653 3446788998755 776553
No 82
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=97.72 E-value=0.00023 Score=46.61 Aligned_cols=55 Identities=20% Similarity=0.147 Sum_probs=46.0
Q ss_pred CCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHHH
Q 030914 88 QCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMH 150 (169)
Q Consensus 88 ~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~~ 150 (169)
.||+|.++..+|...|++|+.+.+.. ++.+...++|.+..+|+.+.+...+.+..
T Consensus 16 ~sp~~~~v~~~L~~~gi~~~~~~~~~--------~~~~p~g~vPvl~~~g~~l~eS~~I~~yL 70 (75)
T cd03080 16 LSPFCLKVETFLRMAGIPYENKFGGL--------AKRSPKGKLPFIELNGEKIADSELIIDHL 70 (75)
T ss_pred CCHHHHHHHHHHHHCCCCcEEeecCc--------ccCCCCCCCCEEEECCEEEcCHHHHHHHH
Confidence 58999999999999999999888753 25667889999999999888877766543
No 83
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=97.71 E-value=0.00014 Score=57.27 Aligned_cols=55 Identities=18% Similarity=0.342 Sum_probs=41.6
Q ss_pred CeEEEeecCCCCCCCccHHHHHHHHhcC-----CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCe
Q 030914 75 PVMLYMKGVPEFPQCGFSSLAVRVLGAY-----NVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGE 138 (169)
Q Consensus 75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~-----~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~ 138 (169)
.|++|+. +|||+|..++.++++. .+.+..+|++.++++. +..|-.++|+++++++
T Consensus 136 ~I~~F~a-----~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~----~~~~V~~vPtl~i~~~ 195 (215)
T TIGR02187 136 RIEVFVT-----PTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLA----EKYGVMSVPKIVINKG 195 (215)
T ss_pred EEEEEEC-----CCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHH----HHhCCccCCEEEEecC
Confidence 3556777 7999999999988754 3667778888776643 3457889999999754
No 84
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=97.71 E-value=0.00019 Score=46.50 Aligned_cols=66 Identities=12% Similarity=0.097 Sum_probs=49.3
Q ss_pred EEEeecCCCCCCCccHHHHHHHHhc--CCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe-CCeEeeccHHHHH
Q 030914 77 MLYMKGVPEFPQCGFSSLAVRVLGA--YNVPISARNILEDPELKSAVKAFSHWPTFPQIFI-KGEFIGGSDIILN 148 (169)
Q Consensus 77 vly~k~~~~~~~C~~c~~a~~~L~~--~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi-~g~~iGG~d~l~~ 148 (169)
.+|.. +.||+|.+++-+|.. .|++|+.+.++.. ....++.+.+...++|.+.. ||..+.....+.+
T Consensus 2 ~Ly~~-----~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~~~vP~l~~~~g~~l~es~aI~~ 70 (73)
T cd03049 2 KLLYS-----PTSPYVRKVRVAAHETGLGDDVELVLVNPW-SDDESLLAVNPLGKIPALVLDDGEALFDSRVICE 70 (73)
T ss_pred EEecC-----CCCcHHHHHHHHHHHhCCCCCcEEEEcCcc-cCChHHHHhCCCCCCCEEEECCCCEEECHHHHHh
Confidence 46665 689999999999999 8999999888642 12244566777889999985 6777766655544
No 85
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=97.69 E-value=0.00018 Score=56.39 Aligned_cols=67 Identities=22% Similarity=0.305 Sum_probs=51.3
Q ss_pred EEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEE-eCCeEeeccHHHHHHHh
Q 030914 78 LYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIF-IKGEFIGGSDIILNMHQ 151 (169)
Q Consensus 78 ly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vf-i~g~~iGG~d~l~~~~~ 151 (169)
+|.. ..||+|.+++-+|...|++|+.+++..++.. . ..+.++..++|.+. .||..+++...+.+..+
T Consensus 2 Ly~~-----~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~~-~-~~~~np~g~vP~l~~~~g~~l~es~~I~~yL~ 69 (209)
T TIGR02182 2 LYIY-----DHCPFCVRARMIFGLKNIPVEKHVLLNDDEE-T-PIRMIGAKQVPILQKDDGRAMPESLDIVAYFD 69 (209)
T ss_pred eecC-----CCCChHHHHHHHHHHcCCCeEEEECCCCcch-h-HHHhcCCCCcceEEeeCCeEeccHHHHHHHHH
Confidence 5665 5799999999999999999999988654322 2 24566778999997 78888888777666433
No 86
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=97.65 E-value=0.00039 Score=45.98 Aligned_cols=68 Identities=15% Similarity=0.059 Sum_probs=51.8
Q ss_pred eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCC--CHHHHHHHHHhcCCCCCcEEEeC---CeEeeccHHHHHH
Q 030914 76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILE--DPELKSAVKAFSHWPTFPQIFIK---GEFIGGSDIILNM 149 (169)
Q Consensus 76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~--~~~~~~~l~~~~g~~t~P~vfi~---g~~iGG~d~l~~~ 149 (169)
+.||.. +. |+|.++.-+|...|++|+.+.+.. +....+++.+.+...++|.+..+ |..+.....+.+.
T Consensus 2 ~~Ly~~-----~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~y 74 (81)
T cd03048 2 ITLYTH-----GT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLY 74 (81)
T ss_pred eEEEeC-----CC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHH
Confidence 467865 44 999999999999999999877763 33445667788888899999887 6777665555544
No 87
>PRK10387 glutaredoxin 2; Provisional
Probab=97.63 E-value=0.00031 Score=54.37 Aligned_cols=68 Identities=21% Similarity=0.305 Sum_probs=51.1
Q ss_pred eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEE-EeCCeEeeccHHHHHHH
Q 030914 76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQI-FIKGEFIGGSDIILNMH 150 (169)
Q Consensus 76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~v-fi~g~~iGG~d~l~~~~ 150 (169)
+.||+. +.||+|.+++-+|+..|++|+.+++...+.. .. .+.++..++|.+ .-+|..+.....+....
T Consensus 1 ~~Ly~~-----~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~-~~-~~~~p~~~VPvL~~~~g~~l~eS~aI~~yL 69 (210)
T PRK10387 1 MKLYIY-----DHCPFCVKARMIFGLKNIPVELIVLANDDEA-TP-IRMIGQKQVPILQKDDGSYMPESLDIVHYI 69 (210)
T ss_pred CEEEeC-----CCCchHHHHHHHHHHcCCCeEEEEcCCCchh-hH-HHhcCCcccceEEecCCeEecCHHHHHHHH
Confidence 357876 5799999999999999999999998654322 22 345667899999 46788888776665544
No 88
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.62 E-value=0.00019 Score=47.46 Aligned_cols=48 Identities=21% Similarity=0.392 Sum_probs=35.4
Q ss_pred CCCccHHHHHHH----HhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeE
Q 030914 87 PQCGFSSLAVRV----LGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEF 139 (169)
Q Consensus 87 ~~C~~c~~a~~~----L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~ 139 (169)
++||+|.++.++ +...+++++.+|+ .+.+ .+ ...|-.++|.++|||+.
T Consensus 8 ~~C~~C~~~~~~~~~~~~~~~i~~ei~~~-~~~~---~~-~~ygv~~vPalvIng~~ 59 (76)
T PF13192_consen 8 PGCPYCPELVQLLKEAAEELGIEVEIIDI-EDFE---EI-EKYGVMSVPALVINGKV 59 (76)
T ss_dssp SSCTTHHHHHHHHHHHHHHTTEEEEEEET-TTHH---HH-HHTT-SSSSEEEETTEE
T ss_pred CCCCCcHHHHHHHHHHHHhcCCeEEEEEc-cCHH---HH-HHcCCCCCCEEEECCEE
Confidence 469999977774 4667888988998 3322 23 44578999999999984
No 89
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=97.61 E-value=9.5e-05 Score=53.34 Aligned_cols=44 Identities=18% Similarity=0.335 Sum_probs=36.7
Q ss_pred CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHH
Q 030914 75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKA 123 (169)
Q Consensus 75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~ 123 (169)
.|.||.. |.|.-|++|+++|+++||+|+.+|+..++--+++|++
T Consensus 2 ~itiy~~-----p~C~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~ 45 (117)
T COG1393 2 MITIYGN-----PNCSTCRKALAWLEEHGIEYTFIDYLKTPPSREELKK 45 (117)
T ss_pred eEEEEeC-----CCChHHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHH
Confidence 3788987 8999999999999999999999999876644444443
No 90
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.56 E-value=0.00037 Score=41.65 Aligned_cols=57 Identities=25% Similarity=0.396 Sum_probs=43.7
Q ss_pred eEEEeecCCCCCCCccHHHHHHHHh-----cCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCe
Q 030914 76 VMLYMKGVPEFPQCGFSSLAVRVLG-----AYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGE 138 (169)
Q Consensus 76 Vvly~k~~~~~~~C~~c~~a~~~L~-----~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~ 138 (169)
+++|.. .+|++|.++...+. ..++.+..+++.......+.. ...+..++|.+++.+.
T Consensus 1 l~~~~~-----~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~P~~~~~~~ 62 (69)
T cd01659 1 LVLFYA-----PWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKEL-KRYGVGGVPTLVVFGP 62 (69)
T ss_pred CEEEEC-----CCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHH-HhCCCccccEEEEEeC
Confidence 355665 58999999999999 677899999998877665542 3356788999988763
No 91
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=97.55 E-value=0.00036 Score=46.60 Aligned_cols=64 Identities=17% Similarity=0.058 Sum_probs=49.0
Q ss_pred CCCCccHHHHHHHHhcCCCCeEEEEcCCC--HHHHHHHHHhcCCCCCcEEEeC-CeEeeccHHHHHHH
Q 030914 86 FPQCGFSSLAVRVLGAYNVPISARNILED--PELKSAVKAFSHWPTFPQIFIK-GEFIGGSDIILNMH 150 (169)
Q Consensus 86 ~~~C~~c~~a~~~L~~~~v~~~~~di~~~--~~~~~~l~~~~g~~t~P~vfi~-g~~iGG~d~l~~~~ 150 (169)
.+.||+|.+++-+|...|++|+.+.+... .....++ +.++..++|.+..+ |..+.+...+.+..
T Consensus 13 ~~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~~vP~L~~~~~~~l~eS~aI~~yL 79 (84)
T cd03038 13 RAFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGFYTVPVIVDGSGEVIGDSFAIAEYL 79 (84)
T ss_pred CCcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCCceeCeEEECCCCEEeCHHHHHHHH
Confidence 47899999999999999999998877532 2233344 55677899999888 88888777666653
No 92
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.55 E-value=0.00028 Score=63.09 Aligned_cols=71 Identities=18% Similarity=0.184 Sum_probs=53.3
Q ss_pred cccHHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHh----cC-CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEE
Q 030914 60 GLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLG----AY-NVPISARNILEDPELKSAVKAFSHWPTFPQIF 134 (169)
Q Consensus 60 ~~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~----~~-~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vf 134 (169)
+++..+.|+++-+...|.+|.. ++||+|.++.+.++ +. +|..+.+|+...+++ .+..+..++|.++
T Consensus 464 ~~~~~~~i~~~~~~~~i~v~~~-----~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~----~~~~~v~~vP~~~ 534 (555)
T TIGR03143 464 GEELLEKIKKITKPVNIKIGVS-----LSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDL----KDEYGIMSVPAIV 534 (555)
T ss_pred CHHHHHHHHhcCCCeEEEEEEC-----CCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHH----HHhCCceecCEEE
Confidence 3455667776666667889887 78999999888553 44 688999999877664 3344778999999
Q ss_pred eCCeE
Q 030914 135 IKGEF 139 (169)
Q Consensus 135 i~g~~ 139 (169)
|||+.
T Consensus 535 i~~~~ 539 (555)
T TIGR03143 535 VDDQQ 539 (555)
T ss_pred ECCEE
Confidence 99963
No 93
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=97.55 E-value=0.00064 Score=44.48 Aligned_cols=59 Identities=24% Similarity=0.394 Sum_probs=42.8
Q ss_pred CCeEEEeecCCCCCCCccHHHHHHHHhc-----CCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--CCeEe
Q 030914 74 NPVMLYMKGVPEFPQCGFSSLAVRVLGA-----YNVPISARNILEDPELKSAVKAFSHWPTFPQIFI--KGEFI 140 (169)
Q Consensus 74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~-----~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~g~~i 140 (169)
.+++|+..+ ++|+.|..+...|++ .++.+..+|+..+.++... .+-..+|.+++ +|+.+
T Consensus 11 ~~~ll~~~~----~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~v~~~P~~~~~~~g~~~ 76 (93)
T cd02947 11 KPVVVDFWA----PWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEE----YGVRSIPTFLFFKNGKEV 76 (93)
T ss_pred CcEEEEEEC----CCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHh----cCcccccEEEEEECCEEE
Confidence 444444433 799999999999977 7788889999876665443 35678898766 77643
No 94
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=97.52 E-value=0.00015 Score=47.11 Aligned_cols=64 Identities=16% Similarity=0.135 Sum_probs=48.5
Q ss_pred CCccHHHHHHHHhcCCCCeEEEEcCC---CHHHHHHHHHhcCCCCCcEEEe-CCeEeeccHHHHHHHh
Q 030914 88 QCGFSSLAVRVLGAYNVPISARNILE---DPELKSAVKAFSHWPTFPQIFI-KGEFIGGSDIILNMHQ 151 (169)
Q Consensus 88 ~C~~c~~a~~~L~~~~v~~~~~di~~---~~~~~~~l~~~~g~~t~P~vfi-~g~~iGG~d~l~~~~~ 151 (169)
.||||.++.-+|..+|++|+..-+.. +.....++.++++..++|.+.. +|..+.....+.+..+
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~ 68 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEYLE 68 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHHHH
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHHHh
Confidence 49999999999999999998766622 2222256788999999999998 8898888777766543
No 95
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=97.52 E-value=0.0013 Score=46.77 Aligned_cols=63 Identities=14% Similarity=0.141 Sum_probs=44.1
Q ss_pred hcCCeEEEeecCCCCCCCccHHHHHHHHhcC-----CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEE--EeCCeEeec
Q 030914 72 KENPVMLYMKGVPEFPQCGFSSLAVRVLGAY-----NVPISARNILEDPELKSAVKAFSHWPTFPQI--FIKGEFIGG 142 (169)
Q Consensus 72 ~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~-----~v~~~~~di~~~~~~~~~l~~~~g~~t~P~v--fi~g~~iGG 142 (169)
+...|+++... |||+.|+.+...|++. ++.+..+|++..+++.+ ..+-.++|.+ |-+|+-++-
T Consensus 21 ~~~~vvV~f~a----~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~----~~~v~~vPt~l~fk~G~~v~~ 90 (113)
T cd02989 21 SSERVVCHFYH----PEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVE----KLNIKVLPTVILFKNGKTVDR 90 (113)
T ss_pred CCCcEEEEEEC----CCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHH----HCCCccCCEEEEEECCEEEEE
Confidence 34566666554 8999999988877542 47788889988776543 3356677776 668876653
No 96
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=97.51 E-value=0.00016 Score=52.72 Aligned_cols=36 Identities=25% Similarity=0.531 Sum_probs=32.3
Q ss_pred CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCH
Q 030914 75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDP 115 (169)
Q Consensus 75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~ 115 (169)
.+.||.. |.|.-|++|+++|+++||+|+.+|+..++
T Consensus 2 ~i~iY~~-----p~Cst~RKA~~~L~~~gi~~~~~d~~~~p 37 (126)
T TIGR01616 2 TIIFYEK-----PGCANNARQKAALKASGHDVEVQDILKEP 37 (126)
T ss_pred eEEEEeC-----CCCHHHHHHHHHHHHCCCCcEEEeccCCC
Confidence 4678988 89999999999999999999999997643
No 97
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=97.49 E-value=0.00085 Score=43.79 Aligned_cols=68 Identities=19% Similarity=0.143 Sum_probs=51.5
Q ss_pred EEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCC--CHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914 77 MLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILE--DPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM 149 (169)
Q Consensus 77 vly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~--~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~ 149 (169)
.+|.. +.+++|+++.-+|...|++|+.+.++. .+...+++.+.+...++|.+..+|..+.....+...
T Consensus 2 ~ly~~-----~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~Y 71 (76)
T cd03050 2 KLYYD-----LMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVDGDFTLAESVAILRY 71 (76)
T ss_pred EEeeC-----CCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHH
Confidence 46766 679999999999999999999887763 222334677778889999998888766665554443
No 98
>PRK10026 arsenate reductase; Provisional
Probab=97.48 E-value=0.00018 Score=53.47 Aligned_cols=37 Identities=22% Similarity=0.453 Sum_probs=33.4
Q ss_pred CCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCH
Q 030914 74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDP 115 (169)
Q Consensus 74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~ 115 (169)
..|.||.. |.|.-|++|+++|+++|++|+.+|+..++
T Consensus 2 ~~i~iY~~-----p~Cst~RKA~~wL~~~gi~~~~~d~~~~p 38 (141)
T PRK10026 2 SNITIYHN-----PACGTSRNTLEMIRNSGTEPTIIHYLETP 38 (141)
T ss_pred CEEEEEeC-----CCCHHHHHHHHHHHHCCCCcEEEeeeCCC
Confidence 35789988 89999999999999999999999998754
No 99
>PRK10853 putative reductase; Provisional
Probab=97.47 E-value=0.00017 Score=52.00 Aligned_cols=36 Identities=25% Similarity=0.178 Sum_probs=32.3
Q ss_pred eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHH
Q 030914 76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPE 116 (169)
Q Consensus 76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~ 116 (169)
|.||.. |.|.-|++|+++|+++|++|+.+|+..++-
T Consensus 2 i~iy~~-----~~C~t~rkA~~~L~~~~i~~~~~d~~k~p~ 37 (118)
T PRK10853 2 VTLYGI-----KNCDTIKKARRWLEAQGIDYRFHDYRVDGL 37 (118)
T ss_pred EEEEcC-----CCCHHHHHHHHHHHHcCCCcEEeehccCCc
Confidence 678887 799999999999999999999999987553
No 100
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=97.46 E-value=0.0002 Score=51.05 Aligned_cols=35 Identities=23% Similarity=0.444 Sum_probs=31.6
Q ss_pred eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCH
Q 030914 76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDP 115 (169)
Q Consensus 76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~ 115 (169)
|.||.. |.|.-|++|+++|+++|++|+.+|+.+++
T Consensus 1 i~iy~~-----~~C~t~rkA~~~L~~~~i~~~~~di~~~~ 35 (112)
T cd03034 1 ITIYHN-----PRCSKSRNALALLEEAGIEPEIVEYLKTP 35 (112)
T ss_pred CEEEEC-----CCCHHHHHHHHHHHHCCCCeEEEecccCC
Confidence 468888 78999999999999999999999997754
No 101
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=97.46 E-value=0.0002 Score=51.19 Aligned_cols=36 Identities=22% Similarity=0.439 Sum_probs=32.2
Q ss_pred eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHH
Q 030914 76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPE 116 (169)
Q Consensus 76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~ 116 (169)
|.+|.. |.|.-|++|+++|+++|++|+.+|+...+-
T Consensus 1 i~iy~~-----~~C~t~rkA~~~L~~~~i~~~~~di~~~p~ 36 (114)
T TIGR00014 1 VTIYHN-----PRCSKSRNTLALLEDKGIEPEVVKYLKNPP 36 (114)
T ss_pred CEEEEC-----CCCHHHHHHHHHHHHCCCCeEEEeccCCCc
Confidence 468888 789999999999999999999999987553
No 102
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=97.43 E-value=0.00098 Score=46.36 Aligned_cols=63 Identities=17% Similarity=0.048 Sum_probs=41.5
Q ss_pred CCeEEEeecCCCCCCCccHHHHHHHHhcC-----CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEE--eCCeEee
Q 030914 74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAY-----NVPISARNILEDPELKSAVKAFSHWPTFPQIF--IKGEFIG 141 (169)
Q Consensus 74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~-----~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vf--i~g~~iG 141 (169)
..|+|+..+ +||+.|+.....|++. ++.+-.+|++.++... .+.+..+...+|.++ -+|+.++
T Consensus 16 k~vvv~F~a----~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~-~l~~~~~V~~~Pt~~~~~~G~~v~ 85 (103)
T cd02985 16 RLVVLEFAL----KHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTM-ELCRREKIIEVPHFLFYKDGEKIH 85 (103)
T ss_pred CEEEEEEEC----CCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHH-HHHHHcCCCcCCEEEEEeCCeEEE
Confidence 445555544 7999999888877542 4667788887765433 344445677888664 4887553
No 103
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=97.39 E-value=0.001 Score=43.49 Aligned_cols=67 Identities=12% Similarity=-0.022 Sum_probs=50.7
Q ss_pred EEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCH-HHHHHHHHhcCCCCCcEEEeC-CeEeeccHHHHHH
Q 030914 78 LYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDP-ELKSAVKAFSHWPTFPQIFIK-GEFIGGSDIILNM 149 (169)
Q Consensus 78 ly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~-~~~~~l~~~~g~~t~P~vfi~-g~~iGG~d~l~~~ 149 (169)
+|.. +.|++|.+++-+|...|++|+.++++... ....++++.+...++|.+..+ |..+.....+.+.
T Consensus 3 Ly~~-----~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~~~g~~l~es~aI~~y 71 (75)
T cd03044 3 LYTY-----PGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPLGKVPAFEGADGFCLFESNAIAYY 71 (75)
T ss_pred EecC-----CCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCCCCCCEEEcCCCCEEeeHHHHHHH
Confidence 5655 68999999999999999999998887532 233567778888999999985 7666655444443
No 104
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=97.37 E-value=0.00073 Score=48.52 Aligned_cols=58 Identities=17% Similarity=0.210 Sum_probs=41.1
Q ss_pred CeEE-EeecCCCCCCCccHHHHHHHHhcC-----C-CCeEEEEcCCCHHHHHHHHHhcCCCCCcEE--EeCCeEee
Q 030914 75 PVML-YMKGVPEFPQCGFSSLAVRVLGAY-----N-VPISARNILEDPELKSAVKAFSHWPTFPQI--FIKGEFIG 141 (169)
Q Consensus 75 ~Vvl-y~k~~~~~~~C~~c~~a~~~L~~~-----~-v~~~~~di~~~~~~~~~l~~~~g~~t~P~v--fi~g~~iG 141 (169)
.|+| |+. +||+.|+.+..+|++. + +.+-.+|++.++++. +..|-.++|.+ |-||+.++
T Consensus 16 ~vVV~F~A-----~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la----~~~~V~~iPTf~~fk~G~~v~ 82 (114)
T cd02954 16 VVVIRFGR-----DWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFN----KMYELYDPPTVMFFFRNKHMK 82 (114)
T ss_pred EEEEEEEC-----CCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHH----HHcCCCCCCEEEEEECCEEEE
Confidence 3554 555 7999999988877433 2 467788999887654 44467788887 55888764
No 105
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=97.34 E-value=0.0013 Score=52.90 Aligned_cols=75 Identities=13% Similarity=0.146 Sum_probs=57.6
Q ss_pred eEEEeecCC---CCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHHHh
Q 030914 76 VMLYMKGVP---EFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQ 151 (169)
Q Consensus 76 Vvly~k~~~---~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~~~ 151 (169)
|.+|.|... ..+.||+|+++.-+|...|++|+.+.|+.... .+++.+.+...++|.+..+|..|.....+.+..+
T Consensus 3 ~el~~ka~~~~~~~~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~-~~~fl~inP~g~vPvL~~~g~~l~ES~aI~eYL~ 80 (236)
T TIGR00862 3 IELFVKAGSDGESIGNCPFSQRLFMILWLKGVVFNVTTVDLKRK-PEDLQNLAPGTHPPFLTYNTEVKTDVNKIEEFLE 80 (236)
T ss_pred eEEEEecCCCCCcCCCCHhHHHHHHHHHHcCCCcEEEEECCCCC-CHHHHHHCcCCCCCEEEECCEEeecHHHHHHHHH
Confidence 556665432 35789999999999999999999888864322 3567788888899999888888888777666544
No 106
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=97.33 E-value=0.0009 Score=45.41 Aligned_cols=70 Identities=20% Similarity=0.361 Sum_probs=44.5
Q ss_pred cHHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhc----C--CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEE-
Q 030914 62 SLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGA----Y--NVPISARNILEDPELKSAVKAFSHWPTFPQIF- 134 (169)
Q Consensus 62 ~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~----~--~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vf- 134 (169)
+.++.+.+ ...+++|+... ++|+.|+.....|.+ + ++.+-.+|++.++. +.+..+...+|.++
T Consensus 8 ~f~~~i~~--~~~~vvv~f~~----~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~~v~~~Pt~~~ 77 (103)
T PF00085_consen 8 NFEKFINE--SDKPVVVYFYA----PWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKE----LCKKYGVKSVPTIIF 77 (103)
T ss_dssp THHHHHTT--TSSEEEEEEES----TTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHH----HHHHTTCSSSSEEEE
T ss_pred HHHHHHHc--cCCCEEEEEeC----CCCCccccccceecccccccccccccchhhhhccch----hhhccCCCCCCEEEE
Confidence 33444443 23555555443 799999999877732 3 46777888876654 34445678889884
Q ss_pred -eCCeEee
Q 030914 135 -IKGEFIG 141 (169)
Q Consensus 135 -i~g~~iG 141 (169)
-+|+.+.
T Consensus 78 ~~~g~~~~ 85 (103)
T PF00085_consen 78 FKNGKEVK 85 (103)
T ss_dssp EETTEEEE
T ss_pred EECCcEEE
Confidence 4776554
No 107
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.0012 Score=43.83 Aligned_cols=62 Identities=23% Similarity=0.284 Sum_probs=44.7
Q ss_pred EEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCH-HHHHHHH-----------HhcCCCCCcEEEeC-CeEeecc
Q 030914 77 MLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDP-ELKSAVK-----------AFSHWPTFPQIFIK-GEFIGGS 143 (169)
Q Consensus 77 vly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~-~~~~~l~-----------~~~g~~t~P~vfi~-g~~iGG~ 143 (169)
++|.. ..||.|..+++.|++.+|+|+.++|..+- .+++.|+ +..|.-.+|.+..+ |+-|-|.
T Consensus 5 ~lfgs-----n~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl~~ 79 (85)
T COG4545 5 KLFGS-----NLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVLGD 79 (85)
T ss_pred eeecc-----ccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEEec
Confidence 56766 47999999999999999999999997632 2222221 12367789999875 5555553
No 108
>PTZ00051 thioredoxin; Provisional
Probab=97.30 E-value=0.0015 Score=44.42 Aligned_cols=70 Identities=14% Similarity=0.227 Sum_probs=43.2
Q ss_pred HHHHHHhhcCC-eEEEeecCCCCCCCccHHHHHHHHhcC-----CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEE--EeC
Q 030914 65 EVVEQDVKENP-VMLYMKGVPEFPQCGFSSLAVRVLGAY-----NVPISARNILEDPELKSAVKAFSHWPTFPQI--FIK 136 (169)
Q Consensus 65 ~~i~~~~~~~~-Vvly~k~~~~~~~C~~c~~a~~~L~~~-----~v~~~~~di~~~~~~~~~l~~~~g~~t~P~v--fi~ 136 (169)
+.++++++.++ ++|+... +||+.|+.....|... ++.+..+|++.+..+. +..+-..+|.+ |-+
T Consensus 9 ~~~~~~~~~~~~vli~f~~----~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~----~~~~v~~~Pt~~~~~~ 80 (98)
T PTZ00051 9 AEFESTLSQNELVIVDFYA----EWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVA----EKENITSMPTFKVFKN 80 (98)
T ss_pred HHHHHHHhcCCeEEEEEEC----CCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHH----HHCCCceeeEEEEEeC
Confidence 34455555544 4444333 7999999998877652 4677778887655443 33355677765 447
Q ss_pred CeEeec
Q 030914 137 GEFIGG 142 (169)
Q Consensus 137 g~~iGG 142 (169)
|+.++.
T Consensus 81 g~~~~~ 86 (98)
T PTZ00051 81 GSVVDT 86 (98)
T ss_pred CeEEEE
Confidence 765543
No 109
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.00081 Score=55.55 Aligned_cols=77 Identities=19% Similarity=0.321 Sum_probs=57.3
Q ss_pred cccHHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcC----C--CCeEEEEcCCCHHHHHHHHHhcCCCCCcEE
Q 030914 60 GLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAY----N--VPISARNILEDPELKSAVKAFSHWPTFPQI 133 (169)
Q Consensus 60 ~~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~----~--v~~~~~di~~~~~~~~~l~~~~g~~t~P~v 133 (169)
..+.+..|-+.-...||+++... |||+.|+....+|+.. + +..-.+|++.++.+-.. .|-.++|.|
T Consensus 30 ~anfe~~V~~~S~~~PVlV~fWa----p~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaq----fgiqsIPtV 101 (304)
T COG3118 30 EANFEQEVIQSSREVPVLVDFWA----PWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQ----FGVQSIPTV 101 (304)
T ss_pred HhHHHHHHHHHccCCCeEEEecC----CCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHH----hCcCcCCeE
Confidence 34566666666666688777664 9999999999888644 3 44567888888876544 478899998
Q ss_pred --EeCCeEeeccH
Q 030914 134 --FIKGEFIGGSD 144 (169)
Q Consensus 134 --fi~g~~iGG~d 144 (169)
|++|+.|-||-
T Consensus 102 ~af~dGqpVdgF~ 114 (304)
T COG3118 102 YAFKDGQPVDGFQ 114 (304)
T ss_pred EEeeCCcCccccC
Confidence 78999888763
No 110
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=97.26 E-value=0.0023 Score=41.38 Aligned_cols=67 Identities=10% Similarity=-0.007 Sum_probs=50.8
Q ss_pred EEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCC--CHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHH
Q 030914 77 MLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILE--DPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILN 148 (169)
Q Consensus 77 vly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~--~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~ 148 (169)
.+|.. +.+++|.++.-+|.+.|++|+.+++.. ++...+.+++.+...++|.+..+|..+.....+..
T Consensus 2 ~l~~~-----~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~~~~~l~eS~aI~~ 70 (73)
T cd03047 2 TIWGR-----RSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLEDGDFVLWESNAILR 70 (73)
T ss_pred EEEec-----CCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCCCCCEEEECCEEEECHHHHHH
Confidence 46655 578999999999999999999887753 23344567778888899999888877765544433
No 111
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=97.24 E-value=0.0015 Score=51.04 Aligned_cols=68 Identities=18% Similarity=0.260 Sum_probs=53.4
Q ss_pred CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHH
Q 030914 75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILN 148 (169)
Q Consensus 75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~ 148 (169)
.+.||+. +.|++|.++.-+|.+.|++|+.+.|+.. ....++.+.+...++|.+..+|..+--...+..
T Consensus 10 ~~~Ly~~-----~~s~~~~rv~~~L~e~gl~~e~~~v~~~-~~~~~~~~~nP~g~VPvL~~~g~~l~ES~AIl~ 77 (211)
T PRK09481 10 VMTLFSG-----PTDIYSHQVRIVLAEKGVSVEIEQVEKD-NLPQDLIDLNPYQSVPTLVDRELTLYESRIIME 77 (211)
T ss_pred eeEEeCC-----CCChhHHHHHHHHHHCCCCCEEEeCCcc-cCCHHHHHhCCCCCCCEEEECCEEeeCHHHHHH
Confidence 3678987 6899999999999999999999988743 223467778888899999988877665544443
No 112
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=97.23 E-value=0.0013 Score=47.10 Aligned_cols=69 Identities=17% Similarity=0.254 Sum_probs=41.8
Q ss_pred HHHHHHhhcC--CeEEEeecCCCCCCCccHHHHHHHHh-------c--CCCCeEEEEcCCCHHH---------HHHHHHh
Q 030914 65 EVVEQDVKEN--PVMLYMKGVPEFPQCGFSSLAVRVLG-------A--YNVPISARNILEDPEL---------KSAVKAF 124 (169)
Q Consensus 65 ~~i~~~~~~~--~Vvly~k~~~~~~~C~~c~~a~~~L~-------~--~~v~~~~~di~~~~~~---------~~~l~~~ 124 (169)
+.++++.+.+ +|+|+..+ +||++|++....+. . .++.+..+|++.+..+ ...+...
T Consensus 4 ~~~~~a~~~~~k~vlv~f~a----~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~ 79 (125)
T cd02951 4 EDLAEAAADGKKPLLLLFSQ----PGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARK 79 (125)
T ss_pred HHHHHHHHcCCCcEEEEEeC----CCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHH
Confidence 4455666666 55555544 79999998875442 1 2355566777654321 2345555
Q ss_pred cCCCCCcEE-EeCC
Q 030914 125 SHWPTFPQI-FIKG 137 (169)
Q Consensus 125 ~g~~t~P~v-fi~g 137 (169)
.+..++|.+ |+++
T Consensus 80 ~~v~~~Pt~~~~~~ 93 (125)
T cd02951 80 YRVRFTPTVIFLDP 93 (125)
T ss_pred cCCccccEEEEEcC
Confidence 678899996 4543
No 113
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=97.19 E-value=0.0016 Score=44.59 Aligned_cols=62 Identities=11% Similarity=0.252 Sum_probs=41.3
Q ss_pred HHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcC-------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--CCe
Q 030914 68 EQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAY-------NVPISARNILEDPELKSAVKAFSHWPTFPQIFI--KGE 138 (169)
Q Consensus 68 ~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~-------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~g~ 138 (169)
+++++...++.|.. +||++|++....+++. ++.+-.+|++.++.+. ...+..++|.+++ +|+
T Consensus 12 ~~~~~~~~lv~f~a-----~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~----~~~~i~~~Pt~~~~~~g~ 82 (101)
T cd02994 12 TLVLEGEWMIEFYA-----PWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLS----GRFFVTALPTIYHAKDGV 82 (101)
T ss_pred HHHhCCCEEEEEEC-----CCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHH----HHcCCcccCEEEEeCCCC
Confidence 34455555666666 7999999888776432 4667778887776543 3346778888865 554
No 114
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=97.15 E-value=0.0045 Score=43.68 Aligned_cols=67 Identities=12% Similarity=0.134 Sum_probs=44.5
Q ss_pred CCeEEEeecCCCCCCCccHHHHHHHHhcC-----CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEE--EeCCeEeeccHHH
Q 030914 74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAY-----NVPISARNILEDPELKSAVKAFSHWPTFPQI--FIKGEFIGGSDII 146 (169)
Q Consensus 74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~-----~v~~~~~di~~~~~~~~~l~~~~g~~t~P~v--fi~g~~iGG~d~l 146 (169)
.+|+|+... |||+.|+.+...|++. ++.|-.+|++.+ .+.+..+-.++|.+ |-+|+.++...-.
T Consensus 25 ~~vvv~F~a----~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-----~l~~~~~i~~~Pt~~~f~~G~~v~~~~G~ 95 (113)
T cd02957 25 TRVVVHFYE----PGFPRCKILDSHLEELAAKYPETKFVKINAEKA-----FLVNYLDIKVLPTLLVYKNGELIDNIVGF 95 (113)
T ss_pred CEEEEEEeC----CCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-----HHHHhcCCCcCCEEEEEECCEEEEEEecH
Confidence 455554433 8999999988877542 466777777644 45555677888877 6699887655444
Q ss_pred HHH
Q 030914 147 LNM 149 (169)
Q Consensus 147 ~~~ 149 (169)
..+
T Consensus 96 ~~~ 98 (113)
T cd02957 96 EEL 98 (113)
T ss_pred HHh
Confidence 433
No 115
>PRK09381 trxA thioredoxin; Provisional
Probab=97.13 E-value=0.0018 Score=45.03 Aligned_cols=62 Identities=16% Similarity=0.363 Sum_probs=42.0
Q ss_pred cCCeEEEeecCCCCCCCccHHHHHHHHhc----C--CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--CCeEeec
Q 030914 73 ENPVMLYMKGVPEFPQCGFSSLAVRVLGA----Y--NVPISARNILEDPELKSAVKAFSHWPTFPQIFI--KGEFIGG 142 (169)
Q Consensus 73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~~----~--~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~g~~iGG 142 (169)
..+++|+..+ +|||.|+.+...|++ + ++.+-.+|++.++.+. ...+..++|.+++ +|+.++-
T Consensus 21 ~~~vvv~f~~----~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~----~~~~v~~~Pt~~~~~~G~~~~~ 90 (109)
T PRK09381 21 DGAILVDFWA----EWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTA----PKYGIRGIPTLLLFKNGEVAAT 90 (109)
T ss_pred CCeEEEEEEC----CCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHH----HhCCCCcCCEEEEEeCCeEEEE
Confidence 3455555443 799999998876643 2 3567778888776543 3447789998855 8886653
No 116
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=97.11 E-value=0.0028 Score=42.88 Aligned_cols=59 Identities=15% Similarity=0.240 Sum_probs=39.3
Q ss_pred CCeEEEeecCCCCCCCccHHHHHHHHhcC------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEE--eCCeEe
Q 030914 74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAY------NVPISARNILEDPELKSAVKAFSHWPTFPQIF--IKGEFI 140 (169)
Q Consensus 74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vf--i~g~~i 140 (169)
.+|+|+... +||+.|+.....|.+. .+.+-.+|++.++++ .+..+-..+|.++ -+|+.+
T Consensus 13 ~~vlv~f~a----~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l----~~~~~i~~~Pt~~~~~~g~~~ 79 (96)
T cd02956 13 VPVVVDFWA----PRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQI----AQQFGVQALPTVYLFAAGQPV 79 (96)
T ss_pred CeEEEEEEC----CCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHH----HHHcCCCCCCEEEEEeCCEEe
Confidence 356666554 7999999988777542 244567787776654 3344677889885 477654
No 117
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=97.10 E-value=0.0089 Score=40.16 Aligned_cols=59 Identities=24% Similarity=0.494 Sum_probs=41.0
Q ss_pred CeEEEeecCCCCCCCccHHHHHHHHhc----C--CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--CCeEee
Q 030914 75 PVMLYMKGVPEFPQCGFSSLAVRVLGA----Y--NVPISARNILEDPELKSAVKAFSHWPTFPQIFI--KGEFIG 141 (169)
Q Consensus 75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~----~--~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~g~~iG 141 (169)
.|+||... ++|+.|+.....|++ . ++.+-.+|++.++++. +..|..++|.+++ +|+.+.
T Consensus 16 ~vvi~f~~----~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~----~~~~v~~~P~~~~~~~g~~~~ 82 (101)
T TIGR01068 16 PVLVDFWA----PWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIA----AKYGIRSIPTLLLFKNGKEVD 82 (101)
T ss_pred cEEEEEEC----CCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHH----HHcCCCcCCEEEEEeCCcEee
Confidence 56666554 799999988776644 2 3667778887776543 3447789999866 776543
No 118
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=97.08 E-value=0.0033 Score=40.94 Aligned_cols=62 Identities=16% Similarity=0.104 Sum_probs=49.3
Q ss_pred CCCccHHHHHHHHhcCCCCeEEEEcCCCH-HHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHH
Q 030914 87 PQCGFSSLAVRVLGAYNVPISARNILEDP-ELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILN 148 (169)
Q Consensus 87 ~~C~~c~~a~~~L~~~~v~~~~~di~~~~-~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~ 148 (169)
..|++|.++.-+|...|++|+.+.+.... +...++++.+...++|.+..+|..+.....+..
T Consensus 8 ~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~ 70 (73)
T cd03043 8 NYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPTGKVPVLVDGGIVVWDSLAICE 70 (73)
T ss_pred CCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCCCcCCEEEECCEEEEcHHHHHH
Confidence 57999999999999999999988776432 234567788888999999999887776665544
No 119
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=97.07 E-value=0.0027 Score=50.03 Aligned_cols=63 Identities=13% Similarity=0.198 Sum_probs=41.0
Q ss_pred hcCCeEEEeecCCCCCCCccHHHHHHHHhcC-----CCCeEEEEcC--CCHHHHHHHHHhcCCCCCcEEEe--CCeEe
Q 030914 72 KENPVMLYMKGVPEFPQCGFSSLAVRVLGAY-----NVPISARNIL--EDPELKSAVKAFSHWPTFPQIFI--KGEFI 140 (169)
Q Consensus 72 ~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~-----~v~~~~~di~--~~~~~~~~l~~~~g~~t~P~vfi--~g~~i 140 (169)
+...|++|+. ++++|||+|+.+..+|++. ++++..++++ .+++ +.+..+-.++|.+.+ ||+.+
T Consensus 19 ~~~~i~~f~~--~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~----l~~~~~V~~~Pt~~~f~~g~~~ 90 (215)
T TIGR02187 19 NPVEIVVFTD--NDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKE----EAEKYGVERVPTTIILEEGKDG 90 (215)
T ss_pred CCeEEEEEcC--CCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHH----HHHHcCCCccCEEEEEeCCeee
Confidence 3445667755 4458999999999988655 2455567776 3443 444456788888865 65443
No 120
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=97.05 E-value=0.0058 Score=43.03 Aligned_cols=61 Identities=18% Similarity=0.159 Sum_probs=40.5
Q ss_pred cCCeEEEeecCCCCCCCccHHHHHHHH----hc---CCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEE--eCCeEee
Q 030914 73 ENPVMLYMKGVPEFPQCGFSSLAVRVL----GA---YNVPISARNILEDPELKSAVKAFSHWPTFPQIF--IKGEFIG 141 (169)
Q Consensus 73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L----~~---~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vf--i~g~~iG 141 (169)
..+++|+..+ |||+.|+.....+ ++ .++.+-.+|++.++.+ ....|..++|.++ .+|+.++
T Consensus 24 ~~~vlV~F~a----~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l----~~~~~V~~~Pt~~i~~~g~~~~ 93 (111)
T cd02963 24 KKPYLIKITS----DWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRL----ARKLGAHSVPAIVGIINGQVTF 93 (111)
T ss_pred CCeEEEEEEC----CccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHH----HHHcCCccCCEEEEEECCEEEE
Confidence 4556666554 7999998776554 22 2567778888776654 3444778899874 5787553
No 121
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=97.01 E-value=0.0046 Score=40.28 Aligned_cols=67 Identities=19% Similarity=0.239 Sum_probs=48.3
Q ss_pred EEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCC--HHHHHHHHHhcCCCCCcEEEeC-CeEeeccHHHHHH
Q 030914 77 MLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILED--PELKSAVKAFSHWPTFPQIFIK-GEFIGGSDIILNM 149 (169)
Q Consensus 77 vly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~--~~~~~~l~~~~g~~t~P~vfi~-g~~iGG~d~l~~~ 149 (169)
.+|.. +.| .|.+++-+|.+.|++|+.++++.. .....++.+.+...++|.+..+ |..+.....+.+.
T Consensus 2 ~Ly~~-----~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~y 71 (77)
T cd03057 2 KLYYS-----PGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLDDGEVLTESAAILQY 71 (77)
T ss_pred EEEeC-----CCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHH
Confidence 46655 344 478888999999999998777542 2335667788889999999887 7766665555443
No 122
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=96.95 E-value=0.0057 Score=39.50 Aligned_cols=61 Identities=11% Similarity=0.006 Sum_probs=47.2
Q ss_pred ccHHHHHHHHhcCCCCeEEEEcCCC--HHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHHH
Q 030914 90 GFSSLAVRVLGAYNVPISARNILED--PELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMH 150 (169)
Q Consensus 90 ~~c~~a~~~L~~~~v~~~~~di~~~--~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~~ 150 (169)
+.|.+++-+|...|++|+.+.++.. .....++.+.+...++|.+..+|..+.....+....
T Consensus 9 ~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~es~aI~~yL 71 (76)
T cd03046 9 SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVDGDLVLTESAAIILYL 71 (76)
T ss_pred CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHH
Confidence 5688999999999999998877642 233456777788889999999998887776666543
No 123
>PRK10996 thioredoxin 2; Provisional
Probab=96.95 E-value=0.0053 Score=45.17 Aligned_cols=67 Identities=21% Similarity=0.346 Sum_probs=42.0
Q ss_pred HHHHHhhc-CCeEEEeecCCCCCCCccHHHHHHHHhcC------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--C
Q 030914 66 VVEQDVKE-NPVMLYMKGVPEFPQCGFSSLAVRVLGAY------NVPISARNILEDPELKSAVKAFSHWPTFPQIFI--K 136 (169)
Q Consensus 66 ~i~~~~~~-~~Vvly~k~~~~~~~C~~c~~a~~~L~~~------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~ 136 (169)
.++++++. ..|+|+... +||+.|++....|.+. ++.+-.+|++.++++. +..+..++|.+++ +
T Consensus 44 ~~~~~i~~~k~vvv~F~a----~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~----~~~~V~~~Ptlii~~~ 115 (139)
T PRK10996 44 TLDKLLQDDLPVVIDFWA----PWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELS----ARFRIRSIPTIMIFKN 115 (139)
T ss_pred HHHHHHhCCCeEEEEEEC----CCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHH----HhcCCCccCEEEEEEC
Confidence 34444443 445555543 7999999887766432 3556677887776643 3446677887744 7
Q ss_pred CeEe
Q 030914 137 GEFI 140 (169)
Q Consensus 137 g~~i 140 (169)
|+.+
T Consensus 116 G~~v 119 (139)
T PRK10996 116 GQVV 119 (139)
T ss_pred CEEE
Confidence 8755
No 124
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=96.95 E-value=0.0038 Score=46.93 Aligned_cols=62 Identities=15% Similarity=0.199 Sum_probs=41.1
Q ss_pred eEEEeecCCCCCCCccHHHHHHHHh----cC---CCCeEEEEcCCCHHHHHHHHHhc--CCCCCcEE--EeCCeEeec
Q 030914 76 VMLYMKGVPEFPQCGFSSLAVRVLG----AY---NVPISARNILEDPELKSAVKAFS--HWPTFPQI--FIKGEFIGG 142 (169)
Q Consensus 76 Vvly~k~~~~~~~C~~c~~a~~~L~----~~---~v~~~~~di~~~~~~~~~l~~~~--g~~t~P~v--fi~g~~iGG 142 (169)
|+.|.. +||+.|+.....|+ ++ ++.+-.+|++.++++.+.+.-.+ +.+++|.+ |.+|+.++.
T Consensus 51 vV~Fya-----~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~r 123 (152)
T cd02962 51 LVEFFT-----TWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIILFQGGKEVAR 123 (152)
T ss_pred EEEEEC-----CCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCCCCEEEEEECCEEEEE
Confidence 445555 79999998887663 22 37788899998887766553222 12346765 678887653
No 125
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=96.92 E-value=0.0044 Score=43.08 Aligned_cols=48 Identities=13% Similarity=0.214 Sum_probs=34.0
Q ss_pred CCCccHHHHHHHHhcC------------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEE--eCCe
Q 030914 87 PQCGFSSLAVRVLGAY------------NVPISARNILEDPELKSAVKAFSHWPTFPQIF--IKGE 138 (169)
Q Consensus 87 ~~C~~c~~a~~~L~~~------------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vf--i~g~ 138 (169)
|||++|++....+++. .+.+-.+|++.+++ +.+..|..++|.++ -+|+
T Consensus 28 ~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~----l~~~~~v~~~Ptl~~~~~g~ 89 (108)
T cd02996 28 DWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESD----IADRYRINKYPTLKLFRNGM 89 (108)
T ss_pred CCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHH----HHHhCCCCcCCEEEEEeCCc
Confidence 8999999988777421 35677788887755 44445788999884 4665
No 126
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=96.88 E-value=0.0087 Score=41.38 Aligned_cols=59 Identities=10% Similarity=0.144 Sum_probs=36.6
Q ss_pred cCCeEEEeecCCCCCCCccHHHHHHHHhc----CC---CCeEEEEcCCCHHHHHHHHHhcCCCCCcEE--EeCCeEe
Q 030914 73 ENPVMLYMKGVPEFPQCGFSSLAVRVLGA----YN---VPISARNILEDPELKSAVKAFSHWPTFPQI--FIKGEFI 140 (169)
Q Consensus 73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~~----~~---v~~~~~di~~~~~~~~~l~~~~g~~t~P~v--fi~g~~i 140 (169)
..+|+|+... +||+.|+.....|.. ++ +.+..+|++ +++ +.+..+...+|.+ |-+|+.+
T Consensus 17 ~~~vvv~F~a----~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~----~~~~~~v~~~Pt~~~~~~g~~~ 84 (102)
T cd02948 17 KGLTVVDVYQ----EWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TID----TLKRYRGKCEPTFLFYKNGELV 84 (102)
T ss_pred CCeEEEEEEC----CcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHH----HHHHcCCCcCcEEEEEECCEEE
Confidence 3445555544 799999988877643 32 446667776 433 3344467788865 4577643
No 127
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=96.87 E-value=0.0023 Score=52.31 Aligned_cols=61 Identities=15% Similarity=0.215 Sum_probs=47.2
Q ss_pred CCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914 88 QCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM 149 (169)
Q Consensus 88 ~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~ 149 (169)
.||+|.++.-+|++.|++|+.+.|+... ..+++.+++-..++|.+..+|..|.....+.+.
T Consensus 72 ~cp~s~rV~i~L~ekgi~ye~~~vdl~~-~~~~fl~iNP~GkVPvL~~d~~~L~ES~aI~~Y 132 (265)
T PLN02817 72 DCPFCQRVLLTLEEKHLPYDMKLVDLTN-KPEWFLKISPEGKVPVVKLDEKWVADSDVITQA 132 (265)
T ss_pred CCcHHHHHHHHHHHcCCCCEEEEeCcCc-CCHHHHhhCCCCCCCEEEECCEEEecHHHHHHH
Confidence 5999999999999999999987775432 123466777788999999999877666555554
No 128
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=96.86 E-value=0.0022 Score=45.30 Aligned_cols=36 Identities=14% Similarity=0.308 Sum_probs=25.8
Q ss_pred CCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHH
Q 030914 87 PQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVK 122 (169)
Q Consensus 87 ~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~ 122 (169)
|.|.-|++|+++|++.|++|+.+|+...+--+++|.
T Consensus 4 ~~C~t~rka~~~L~~~gi~~~~~d~~k~p~s~~el~ 39 (110)
T PF03960_consen 4 PNCSTCRKALKWLEENGIEYEFIDYKKEPLSREELR 39 (110)
T ss_dssp TT-HHHHHHHHHHHHTT--EEEEETTTS---HHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCeEeehhhhCCCCHHHHH
Confidence 789999999999999999999999988654444443
No 129
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=96.83 E-value=0.0049 Score=47.31 Aligned_cols=79 Identities=15% Similarity=0.104 Sum_probs=48.5
Q ss_pred CeEEEeecCCCCCCCccHHHHHHHHhcC-----CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEE--EeCCeEee---ccH
Q 030914 75 PVMLYMKGVPEFPQCGFSSLAVRVLGAY-----NVPISARNILEDPELKSAVKAFSHWPTFPQI--FIKGEFIG---GSD 144 (169)
Q Consensus 75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~-----~v~~~~~di~~~~~~~~~l~~~~g~~t~P~v--fi~g~~iG---G~d 144 (169)
.|||+... +||+.|+.+...|..+ .+.|..+|++.. .+....+-.++|.+ |-+|+.++ |++
T Consensus 85 ~VVV~Fya----~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-----~l~~~f~v~~vPTlllyk~G~~v~~~vG~~ 155 (175)
T cd02987 85 TVVVHIYE----PGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-----GASDEFDTDALPALLVYKGGELIGNFVRVT 155 (175)
T ss_pred EEEEEEEC----CCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-----hhHHhCCCCCCCEEEEEECCEEEEEEechH
Confidence 56666553 7999999887766433 356777777643 45555567888976 66998775 333
Q ss_pred HHH-HHHhcccHHHHHhcc
Q 030914 145 IIL-NMHQSGELKEKLKGI 162 (169)
Q Consensus 145 ~l~-~~~~~g~L~~~L~~~ 162 (169)
+.. .-.....|+.+|..+
T Consensus 156 ~~~g~~f~~~~le~~L~~~ 174 (175)
T cd02987 156 EDLGEDFDAEDLESFLVEY 174 (175)
T ss_pred HhcCCCCCHHHHHHHHHhc
Confidence 321 122234466666543
No 130
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.003 Score=47.33 Aligned_cols=70 Identities=20% Similarity=0.286 Sum_probs=48.7
Q ss_pred cHHHHHHHHhhc-CC-eEEEeecCCCCCCCccHHHHHHHHhcCC------CCeEEEEcCCCHHHHHHHHHhcCCCCCcEE
Q 030914 62 SLKEVVEQDVKE-NP-VMLYMKGVPEFPQCGFSSLAVRVLGAYN------VPISARNILEDPELKSAVKAFSHWPTFPQI 133 (169)
Q Consensus 62 ~~~~~i~~~~~~-~~-Vvly~k~~~~~~~C~~c~~a~~~L~~~~------v~~~~~di~~~~~~~~~l~~~~g~~t~P~v 133 (169)
+..+.-+.++++ .+ +|-|.. +||+.|+...-.|+++- +++-.+|++++.++.+ ..+-..+|.+
T Consensus 49 s~~~~~~~Vi~S~~PVlVdF~A-----~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~----~Y~I~avPtv 119 (150)
T KOG0910|consen 49 SDSEFDDKVINSDVPVLVDFHA-----EWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAE----DYEISAVPTV 119 (150)
T ss_pred CHHHHHHHHHccCCCEEEEEec-----CcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHh----hcceeeeeEE
Confidence 445666666654 34 556776 79999999998887653 5566778888777544 3466788987
Q ss_pred --EeCCeEe
Q 030914 134 --FIKGEFI 140 (169)
Q Consensus 134 --fi~g~~i 140 (169)
|-||+-+
T Consensus 120 lvfknGe~~ 128 (150)
T KOG0910|consen 120 LVFKNGEKV 128 (150)
T ss_pred EEEECCEEe
Confidence 6688644
No 131
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=96.77 E-value=0.00038 Score=50.97 Aligned_cols=69 Identities=19% Similarity=0.176 Sum_probs=39.3
Q ss_pred ccHHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHh----cC-CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe
Q 030914 61 LSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLG----AY-NVPISARNILEDPELKSAVKAFSHWPTFPQIFI 135 (169)
Q Consensus 61 ~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~----~~-~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi 135 (169)
++..+.++...+.-.+++++- +|||+|.+.+-+|. .. ++++..+..+.++++-+.+.. .|.+.+|.+++
T Consensus 30 ~~~~~~l~~~~~~~~ilvi~e-----~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt-~g~~~IP~~I~ 103 (129)
T PF14595_consen 30 EEQIEKLKSIQKPYNILVITE-----TWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLT-NGGRSIPTFIF 103 (129)
T ss_dssp HHHHHHHHT--S-EEEEEE-------TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT--SS--SSEEEE
T ss_pred HHHHHHHHhcCCCcEEEEEEC-----CCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHh-CCCeecCEEEE
Confidence 344566666666678999988 79999998776654 33 566666666555555443333 57889999865
No 132
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=96.76 E-value=0.008 Score=42.93 Aligned_cols=62 Identities=15% Similarity=0.136 Sum_probs=41.9
Q ss_pred CCeEEEeecCCCCC--CCccHHHHHHHHhcCC------CCeEEEEcCCCHHHHHHHHHhcCCCCCcEE--EeCCeEeecc
Q 030914 74 NPVMLYMKGVPEFP--QCGFSSLAVRVLGAYN------VPISARNILEDPELKSAVKAFSHWPTFPQI--FIKGEFIGGS 143 (169)
Q Consensus 74 ~~Vvly~k~~~~~~--~C~~c~~a~~~L~~~~------v~~~~~di~~~~~~~~~l~~~~g~~t~P~v--fi~g~~iGG~ 143 (169)
.++|++... + +||.|+.+.-+|.+.- +.+-.+|++.+++ +....+-.++|++ |-||+.++..
T Consensus 28 ~~~v~~f~~----~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~----la~~f~V~sIPTli~fkdGk~v~~~ 99 (111)
T cd02965 28 GDLVLLLAG----DPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQA----LAARFGVLRTPALLFFRDGRYVGVL 99 (111)
T ss_pred CCEEEEecC----CcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHH----HHHHcCCCcCCEEEEEECCEEEEEE
Confidence 454444443 4 5999999998875442 4466788887764 4455577788877 5599877654
No 133
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=96.76 E-value=0.0075 Score=40.69 Aligned_cols=50 Identities=18% Similarity=0.209 Sum_probs=33.2
Q ss_pred CCCccHHHHHHHHhcC------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEE--EeCCeEe
Q 030914 87 PQCGFSSLAVRVLGAY------NVPISARNILEDPELKSAVKAFSHWPTFPQI--FIKGEFI 140 (169)
Q Consensus 87 ~~C~~c~~a~~~L~~~------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~v--fi~g~~i 140 (169)
+||+.|+++...|++. .+.+-.+|+...+++ .+..+-.++|.+ |.+|+.+
T Consensus 24 ~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~----~~~~~i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 24 PWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEI----SEKFEITAVPTFVFFRNGTIV 81 (97)
T ss_pred CCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHH----HHhcCCccccEEEEEECCEEE
Confidence 7999999998877642 355556666555543 344466788866 5577644
No 134
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=96.74 E-value=0.0061 Score=45.05 Aligned_cols=67 Identities=10% Similarity=0.092 Sum_probs=40.5
Q ss_pred HHHhhc-CCeEEEeecCCCCCCCccHHHHHHHHhcC------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe---CC
Q 030914 68 EQDVKE-NPVMLYMKGVPEFPQCGFSSLAVRVLGAY------NVPISARNILEDPELKSAVKAFSHWPTFPQIFI---KG 137 (169)
Q Consensus 68 ~~~~~~-~~Vvly~k~~~~~~~C~~c~~a~~~L~~~------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi---~g 137 (169)
++.+.. .+|+|+..+ +||+.|+.....|.+. ++.+..+|++.+. . ..+.+..+...+|.+++ +|
T Consensus 14 ~~a~~~gk~vvV~F~A----~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~-~-~~~~~~~~V~~iPt~v~~~~~G 87 (142)
T cd02950 14 EVALSNGKPTLVEFYA----DWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPK-W-LPEIDRYRVDGIPHFVFLDREG 87 (142)
T ss_pred HHHHhCCCEEEEEEEC----CcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcc-c-HHHHHHcCCCCCCEEEEECCCC
Confidence 333443 456666554 7999999888776532 2556777776432 1 23334457788898754 46
Q ss_pred eEe
Q 030914 138 EFI 140 (169)
Q Consensus 138 ~~i 140 (169)
+.+
T Consensus 88 ~~v 90 (142)
T cd02950 88 NEE 90 (142)
T ss_pred CEE
Confidence 644
No 135
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=96.74 E-value=0.007 Score=41.12 Aligned_cols=65 Identities=17% Similarity=0.266 Sum_probs=39.7
Q ss_pred HHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcC---------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEE--e
Q 030914 67 VEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAY---------NVPISARNILEDPELKSAVKAFSHWPTFPQIF--I 135 (169)
Q Consensus 67 i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~---------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vf--i 135 (169)
+++.+..++++|+... +||+.|+.....+++. .+.+-.+|.+.++.+ .+..+...+|.++ -
T Consensus 10 f~~~~~~~~~lv~f~a----~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~v~~~Pt~~~~~ 81 (102)
T cd03005 10 FDHHIAEGNHFVKFFA----PWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHREL----CSEFQVRGYPTLLLFK 81 (102)
T ss_pred HHHHhhcCCEEEEEEC----CCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhh----HhhcCCCcCCEEEEEe
Confidence 4444445566655443 7999999876655322 355667777766543 3334678899864 3
Q ss_pred CCeE
Q 030914 136 KGEF 139 (169)
Q Consensus 136 ~g~~ 139 (169)
+|..
T Consensus 82 ~g~~ 85 (102)
T cd03005 82 DGEK 85 (102)
T ss_pred CCCe
Confidence 6653
No 136
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=96.72 E-value=0.006 Score=42.14 Aligned_cols=65 Identities=15% Similarity=0.196 Sum_probs=40.5
Q ss_pred HHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhc----C---C--CCeEEEEcCCCHHHHHHHHHhcCCCCCcEE
Q 030914 63 LKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGA----Y---N--VPISARNILEDPELKSAVKAFSHWPTFPQI 133 (169)
Q Consensus 63 ~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~----~---~--v~~~~~di~~~~~~~~~l~~~~g~~t~P~v 133 (169)
+++.+++..+...++|+... +|||.|++....|++ + + +.+..+|+...+.+ .+..+-.++|.+
T Consensus 5 ~~~~~~~~~~~~~vlv~f~a----~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~I~~~Pt~ 76 (104)
T cd03000 5 LDDSFKDVRKEDIWLVDFYA----PWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSI----ASEFGVRGYPTI 76 (104)
T ss_pred chhhhhhhccCCeEEEEEEC----CCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhH----HhhcCCccccEE
Confidence 44555555555666666554 799999977765532 2 3 44556677665543 344567889988
Q ss_pred Ee
Q 030914 134 FI 135 (169)
Q Consensus 134 fi 135 (169)
++
T Consensus 77 ~l 78 (104)
T cd03000 77 KL 78 (104)
T ss_pred EE
Confidence 43
No 137
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=96.64 E-value=0.0091 Score=42.69 Aligned_cols=74 Identities=18% Similarity=0.305 Sum_probs=44.7
Q ss_pred cHHHHHHHHhhcC-CeEEEeecCCCCCCCccHHHHHHHHhc------CCCCeEEEEcCCCHHHH-HHHHHhcCCCCCcEE
Q 030914 62 SLKEVVEQDVKEN-PVMLYMKGVPEFPQCGFSSLAVRVLGA------YNVPISARNILEDPELK-SAVKAFSHWPTFPQI 133 (169)
Q Consensus 62 ~~~~~i~~~~~~~-~Vvly~k~~~~~~~C~~c~~a~~~L~~------~~v~~~~~di~~~~~~~-~~l~~~~g~~t~P~v 133 (169)
+.++.++....++ +|+|+..+ +||++|+.....+.+ ....|..++++.+++.. ..+. ..| ..+|.+
T Consensus 7 ~~~~al~~A~~~~kpVlV~F~a----~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~-~~g-~~vPt~ 80 (117)
T cd02959 7 TLEDGIKEAKDSGKPLMLLIHK----TWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFS-PDG-GYIPRI 80 (117)
T ss_pred eHHHHHHHHHHcCCcEEEEEeC----CcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcc-cCC-CccceE
Confidence 3567777766554 46655443 799999999887765 34568888888765322 2221 111 248877
Q ss_pred E-e--CCeEee
Q 030914 134 F-I--KGEFIG 141 (169)
Q Consensus 134 f-i--~g~~iG 141 (169)
+ + +|+.++
T Consensus 81 ~f~~~~Gk~~~ 91 (117)
T cd02959 81 LFLDPSGDVHP 91 (117)
T ss_pred EEECCCCCCch
Confidence 4 4 555443
No 138
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=96.63 E-value=0.0079 Score=41.19 Aligned_cols=48 Identities=21% Similarity=0.315 Sum_probs=33.1
Q ss_pred CCCccHHHHHHHHhcC------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEE--EeCCe
Q 030914 87 PQCGFSSLAVRVLGAY------NVPISARNILEDPELKSAVKAFSHWPTFPQI--FIKGE 138 (169)
Q Consensus 87 ~~C~~c~~a~~~L~~~------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~v--fi~g~ 138 (169)
+||++|++....+++. .+.+-.+|++.++.+ .+..+-..+|.+ |-+|+
T Consensus 28 ~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~----~~~~~v~~~Pt~~~~~~g~ 83 (101)
T cd03003 28 PRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRML----CRSQGVNSYPSLYVFPSGM 83 (101)
T ss_pred CCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHH----HHHcCCCccCEEEEEcCCC
Confidence 7999999888876433 245667888877654 333466788988 44665
No 139
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=96.60 E-value=0.011 Score=41.91 Aligned_cols=31 Identities=26% Similarity=0.594 Sum_probs=27.7
Q ss_pred CCCCcchHHHHHHHHhCCCCccc-ccCCCccc
Q 030914 16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDT 46 (169)
Q Consensus 16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~ 46 (169)
.|.|++++++.++|.++|++|.. |+..++..
T Consensus 6 ~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~ 37 (111)
T cd03036 6 YPKCSTCRKAKKWLDEHGVDYTAIDIVEEPPS 37 (111)
T ss_pred CCCCHHHHHHHHHHHHcCCceEEecccCCccc
Confidence 48899999999999999999998 99887654
No 140
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=96.60 E-value=0.017 Score=41.95 Aligned_cols=74 Identities=14% Similarity=0.170 Sum_probs=45.1
Q ss_pred HHHHHHhhcCC-eEEEeecCCCCCCCccHHHHHH-HHhc------C--CCCeEEEEcCCCHHHHHHHHH----hcCCCCC
Q 030914 65 EVVEQDVKENP-VMLYMKGVPEFPQCGFSSLAVR-VLGA------Y--NVPISARNILEDPELKSAVKA----FSHWPTF 130 (169)
Q Consensus 65 ~~i~~~~~~~~-Vvly~k~~~~~~~C~~c~~a~~-~L~~------~--~v~~~~~di~~~~~~~~~l~~----~~g~~t~ 130 (169)
+.++++.++++ |+|+..+ .||++|+...+ .+.. . +.-+..+|++..+++.+.+.+ ..|...+
T Consensus 6 eal~~Ak~~~KpVll~f~a----~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~ 81 (124)
T cd02955 6 EAFEKARREDKPIFLSIGY----STCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGW 81 (124)
T ss_pred HHHHHHHHcCCeEEEEEcc----CCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCC
Confidence 34566666554 7777654 69999998864 3332 1 233455677776666553332 3467778
Q ss_pred cEEEe---CCeEeec
Q 030914 131 PQIFI---KGEFIGG 142 (169)
Q Consensus 131 P~vfi---~g~~iGG 142 (169)
|.+.+ +|+.+-+
T Consensus 82 Pt~vfl~~~G~~~~~ 96 (124)
T cd02955 82 PLNVFLTPDLKPFFG 96 (124)
T ss_pred CEEEEECCCCCEEee
Confidence 88754 6777733
No 141
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=96.59 E-value=0.0079 Score=42.06 Aligned_cols=46 Identities=22% Similarity=0.318 Sum_probs=29.8
Q ss_pred CCCccHHHHHHHHhcC-------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEE
Q 030914 87 PQCGFSSLAVRVLGAY-------NVPISARNILEDPELKSAVKAFSHWPTFPQIF 134 (169)
Q Consensus 87 ~~C~~c~~a~~~L~~~-------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vf 134 (169)
+|||+|++....|.+. ++.+-.+|++.+. .....+..+...+|.++
T Consensus 31 ~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~--~~~~~~~~~v~~~Pti~ 83 (109)
T cd02993 31 PWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQ--REFAKEELQLKSFPTIL 83 (109)
T ss_pred CCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccc--hhhHHhhcCCCcCCEEE
Confidence 7999999988877442 3556667776521 12233345778899874
No 142
>PRK15113 glutathione S-transferase; Provisional
Probab=96.56 E-value=0.013 Score=45.70 Aligned_cols=69 Identities=14% Similarity=0.150 Sum_probs=51.6
Q ss_pred CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCC--CHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHH
Q 030914 75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILE--DPELKSAVKAFSHWPTFPQIFIKGEFIGGSDII 146 (169)
Q Consensus 75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~--~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l 146 (169)
.++||.... +.|++|.++.-+|.+.||+|+.+.++- .+...+++.+.+....+|.+..||..|--..-+
T Consensus 5 ~~~Ly~~~~---~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~~~~~l~ES~aI 75 (214)
T PRK15113 5 AITLYSDAH---FFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQHDDFELSESSAI 75 (214)
T ss_pred eEEEEeCCC---CCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEEECCEEEecHHHH
Confidence 467887521 259999999999999999999887763 333446777888888999999988766544333
No 143
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=96.54 E-value=0.0068 Score=42.69 Aligned_cols=93 Identities=11% Similarity=0.059 Sum_probs=58.0
Q ss_pred CCCCcchHHHHHHHHhCCCCccc-ccCCCccccCCCCCcccccCCcccHHHHHHHHhhcCCeEEEeecCCCCCCCccHHH
Q 030914 16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKVDASGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSL 94 (169)
Q Consensus 16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~~~~~k~~s~~pt~~~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~ 94 (169)
.|.|+.++++.++|.++|++|.. |+..+|-+ . +.++.++....
T Consensus 6 ~~~C~~crka~~~L~~~~i~~~~~di~~~p~s-------------~----~eL~~~l~~~g------------------- 49 (105)
T cd03035 6 IKNCDTVKKARKWLEARGVAYTFHDYRKDGLD-------------A----ATLERWLAKVG------------------- 49 (105)
T ss_pred CCCCHHHHHHHHHHHHcCCCeEEEecccCCCC-------------H----HHHHHHHHHhC-------------------
Confidence 58999999999999999999998 99987543 2 33444433111
Q ss_pred HHHHHhcCCCCeEEEEcC-----CCHHHHHHHHHhcCCCCCcEEEeCCeEeeccH
Q 030914 95 AVRVLGAYNVPISARNIL-----EDPELKSAVKAFSHWPTFPQIFIKGEFIGGSD 144 (169)
Q Consensus 95 a~~~L~~~~v~~~~~di~-----~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d 144 (169)
+..+++..+-.|...++. .+.++.+.|.+...--.-|.|..+++.+=|++
T Consensus 50 ~~~li~~~~~~yk~l~l~~~~~~s~~e~~~~l~~~p~LikRPIi~~~~~~~iGf~ 104 (105)
T cd03035 50 WETLLNKRGTTWRKLDDAQKAALDAAKAIALMLEHPSLIKRPVLETGGKVLVGFS 104 (105)
T ss_pred hHHHHccCchHHHhCChhhhccCCHHHHHHHHHhCcCeeecceEEeCCEEEEeeC
Confidence 234555555444443332 23444444444322334599988888877876
No 144
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=96.52 E-value=0.017 Score=38.30 Aligned_cols=62 Identities=15% Similarity=0.230 Sum_probs=37.4
Q ss_pred HHHHHhhcC-CeEEEeecCCCCCCCccHHHHHHHHhc----C----CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe
Q 030914 66 VVEQDVKEN-PVMLYMKGVPEFPQCGFSSLAVRVLGA----Y----NVPISARNILEDPELKSAVKAFSHWPTFPQIFI 135 (169)
Q Consensus 66 ~i~~~~~~~-~Vvly~k~~~~~~~C~~c~~a~~~L~~----~----~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi 135 (169)
.+.+.+.+. +++|+..+ ++|+.|+++...+.+ . ++.+..+|.+.+.. +.+..+-+.+|.+++
T Consensus 7 ~~~~~i~~~~~~~v~f~~----~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~i~~~Pt~~~ 77 (101)
T cd02961 7 NFDELVKDSKDVLVEFYA----PWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANND----LCSEYGVRGYPTIKL 77 (101)
T ss_pred HHHHHHhCCCcEEEEEEC----CCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHH----HHHhCCCCCCCEEEE
Confidence 344445444 54444333 799999998887743 2 34455666655444 344456788998844
No 145
>PLN02378 glutathione S-transferase DHAR1
Probab=96.52 E-value=0.011 Score=46.22 Aligned_cols=62 Identities=19% Similarity=0.227 Sum_probs=47.1
Q ss_pred CCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914 87 PQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM 149 (169)
Q Consensus 87 ~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~ 149 (169)
+.||+|.++.-+|.+.|++|+.+.|+... -.+++.+.+...++|.+-.+|..|.-...+...
T Consensus 18 ~~~p~~~rv~~~L~e~gl~~e~~~v~~~~-~~~~~l~inP~G~VPvL~~~~~~l~ES~aI~~Y 79 (213)
T PLN02378 18 GDCPFSQRALLTLEEKSLTYKIHLINLSD-KPQWFLDISPQGKVPVLKIDDKWVTDSDVIVGI 79 (213)
T ss_pred CCCcchHHHHHHHHHcCCCCeEEEeCccc-CCHHHHHhCCCCCCCEEEECCEEecCHHHHHHH
Confidence 56999999999999999999877775422 123567788889999999888776655444443
No 146
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=96.48 E-value=0.022 Score=38.69 Aligned_cols=52 Identities=17% Similarity=0.158 Sum_probs=34.3
Q ss_pred eEEEeecCCCCCCCccHHHHHHHHhc----C--CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe
Q 030914 76 VMLYMKGVPEFPQCGFSSLAVRVLGA----Y--NVPISARNILEDPELKSAVKAFSHWPTFPQIFI 135 (169)
Q Consensus 76 Vvly~k~~~~~~~C~~c~~a~~~L~~----~--~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi 135 (169)
++|+... +||++|++....|.+ . .+.+-.+|++.++++. +..+...+|.+++
T Consensus 21 vlv~f~a----~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~----~~~~i~~~P~~~~ 78 (103)
T cd03001 21 WLVEFYA----PWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLA----QQYGVRGFPTIKV 78 (103)
T ss_pred EEEEEEC----CCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHH----HHCCCCccCEEEE
Confidence 5544443 799999998776644 2 3556777887666543 3346788997743
No 147
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=96.44 E-value=0.0052 Score=43.88 Aligned_cols=49 Identities=20% Similarity=0.166 Sum_probs=32.8
Q ss_pred CCCccHHHHHHHHhcCC------CCeEEEEcCCCHHHHHHHHHhcCCCCCcEE--EeCCe
Q 030914 87 PQCGFSSLAVRVLGAYN------VPISARNILEDPELKSAVKAFSHWPTFPQI--FIKGE 138 (169)
Q Consensus 87 ~~C~~c~~a~~~L~~~~------v~~~~~di~~~~~~~~~l~~~~g~~t~P~v--fi~g~ 138 (169)
|||++|+.+...+++.. +.+-.+|++.++.+ ..+..+..++|.+ |.+|+
T Consensus 39 ~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l---~~~~~~I~~~PTl~lf~~g~ 95 (113)
T cd03006 39 PWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGK---CRKQKHFFYFPVIHLYYRSR 95 (113)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHH---HHHhcCCcccCEEEEEECCc
Confidence 89999999888775442 56677888877654 2223345666765 66765
No 148
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=96.42 E-value=0.014 Score=46.76 Aligned_cols=28 Identities=11% Similarity=0.440 Sum_probs=20.7
Q ss_pred eEEEeecCCCCCCCccHHHHHHHHhcC---CCCeEE
Q 030914 76 VMLYMKGVPEFPQCGFSSLAVRVLGAY---NVPISA 108 (169)
Q Consensus 76 Vvly~k~~~~~~~C~~c~~a~~~L~~~---~v~~~~ 108 (169)
|++|+- |.||||++.-+.+.++ +|.+..
T Consensus 111 I~vFtD-----p~CpyCkkl~~~l~~~~~~~v~v~~ 141 (232)
T PRK10877 111 ITVFTD-----ITCGYCHKLHEQMKDYNALGITVRY 141 (232)
T ss_pred EEEEEC-----CCChHHHHHHHHHHHHhcCCeEEEE
Confidence 667777 8999999998877664 454443
No 149
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=96.38 E-value=0.02 Score=39.62 Aligned_cols=45 Identities=20% Similarity=0.194 Sum_probs=30.2
Q ss_pred CCCccHHHHHHHHhcC-----CCCeEEEEcC-CCHHHHHHHHHhcCCCCCcEEEe
Q 030914 87 PQCGFSSLAVRVLGAY-----NVPISARNIL-EDPELKSAVKAFSHWPTFPQIFI 135 (169)
Q Consensus 87 ~~C~~c~~a~~~L~~~-----~v~~~~~di~-~~~~~~~~l~~~~g~~t~P~vfi 135 (169)
+||++|+.....|++. ++.+-.+|.+ .++. +.+..+...+|.+++
T Consensus 28 ~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~----l~~~~~V~~~PT~~l 78 (100)
T cd02999 28 SWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPS----LLSRYGVVGFPTILL 78 (100)
T ss_pred CCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHH----HHHhcCCeecCEEEE
Confidence 7999999888777543 3556666665 4443 444456788897743
No 150
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=96.37 E-value=0.016 Score=40.19 Aligned_cols=64 Identities=17% Similarity=0.221 Sum_probs=35.1
Q ss_pred eEEEeecCCCCCCCccHHHHHHHHhc-------C--CCCeEEEEcCCCHH----------------HHHHHHHhcCCCCC
Q 030914 76 VMLYMKGVPEFPQCGFSSLAVRVLGA-------Y--NVPISARNILEDPE----------------LKSAVKAFSHWPTF 130 (169)
Q Consensus 76 Vvly~k~~~~~~~C~~c~~a~~~L~~-------~--~v~~~~~di~~~~~----------------~~~~l~~~~g~~t~ 130 (169)
|++|+. |+||+|++..+.+.+ . ++.+..+++..+.. ...++....|...+
T Consensus 9 v~~F~~-----~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gt 83 (112)
T PF13098_consen 9 VVVFTD-----PWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGT 83 (112)
T ss_dssp EEEEE------TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SS
T ss_pred EEEEEC-----CCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCcc
Confidence 555655 899999988765542 1 23445556654332 12345566688899
Q ss_pred cEEEe-C--Ce---EeeccH
Q 030914 131 PQIFI-K--GE---FIGGSD 144 (169)
Q Consensus 131 P~vfi-~--g~---~iGG~d 144 (169)
|.+++ | |+ .+-|+-
T Consensus 84 Pt~~~~d~~G~~v~~~~G~~ 103 (112)
T PF13098_consen 84 PTIVFLDKDGKIVYRIPGYL 103 (112)
T ss_dssp SEEEECTTTSCEEEEEESS-
T ss_pred CEEEEEcCCCCEEEEecCCC
Confidence 99866 3 66 344553
No 151
>PLN02473 glutathione S-transferase
Probab=96.37 E-value=0.018 Score=44.63 Aligned_cols=69 Identities=10% Similarity=-0.054 Sum_probs=51.8
Q ss_pred eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCC--CHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914 76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILE--DPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM 149 (169)
Q Consensus 76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~--~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~ 149 (169)
+.||.. +.|++|.++.-+|.+.|++|+.+.++- .+....++.+.+...++|.+..+|..|....-+.+.
T Consensus 3 ~kLy~~-----~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~Y 73 (214)
T PLN02473 3 VKVYGQ-----IKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIEDGDLKLFESRAIARY 73 (214)
T ss_pred eEEecC-----CCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCeEEECCEEEEehHHHHHH
Confidence 457765 679999999999999999999876643 223334455667778999999999888776665553
No 152
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=96.28 E-value=0.013 Score=47.75 Aligned_cols=73 Identities=30% Similarity=0.420 Sum_probs=54.3
Q ss_pred HHHhhcCCeEEEe-ecCCCCCC-CccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHH
Q 030914 68 EQDVKENPVMLYM-KGVPEFPQ-CGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDI 145 (169)
Q Consensus 68 ~~~~~~~~Vvly~-k~~~~~~~-C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~ 145 (169)
++..+...|.||. +-++..|. .|||-++--+|+..+|+|+.++-. ++.+|-..++|.|=.||++|-+.|.
T Consensus 38 k~d~kkD~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~--------~~~rSr~G~lPFIELNGe~iaDS~~ 109 (281)
T KOG4244|consen 38 KTDYKKDTVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCS--------LKRRSRNGTLPFIELNGEHIADSDL 109 (281)
T ss_pred hhccccCeEEEEeccccCCCCCCChHHHHHHHHHHHhCCCceecccc--------ceeeccCCCcceEEeCCeeccccHH
Confidence 3445566677774 11222222 569999999999999999988774 5566777899999999999999886
Q ss_pred HHH
Q 030914 146 ILN 148 (169)
Q Consensus 146 l~~ 148 (169)
+..
T Consensus 110 I~~ 112 (281)
T KOG4244|consen 110 IED 112 (281)
T ss_pred HHH
Confidence 554
No 153
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=96.27 E-value=0.012 Score=39.65 Aligned_cols=51 Identities=14% Similarity=0.265 Sum_probs=33.3
Q ss_pred eEEEeecCCCCCCCccHHHHHHHHhcC--------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe
Q 030914 76 VMLYMKGVPEFPQCGFSSLAVRVLGAY--------NVPISARNILEDPELKSAVKAFSHWPTFPQIFI 135 (169)
Q Consensus 76 Vvly~k~~~~~~~C~~c~~a~~~L~~~--------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi 135 (169)
+++|.. ++|+.|+.....|... ++.+..+|++.++.+. +..+...+|.+++
T Consensus 17 ~i~f~~-----~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~i~~~P~~~~ 75 (102)
T TIGR01126 17 LVEFYA-----PWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLA----SRFGVSGFPTIKF 75 (102)
T ss_pred EEEEEC-----CCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHH----HhCCCCcCCEEEE
Confidence 455565 7999999866655331 2556667776665543 3446788998844
No 154
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=96.23 E-value=0.014 Score=40.07 Aligned_cols=47 Identities=17% Similarity=0.208 Sum_probs=32.2
Q ss_pred CCCccHHHHHHHHhcC------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEE--eCC
Q 030914 87 PQCGFSSLAVRVLGAY------NVPISARNILEDPELKSAVKAFSHWPTFPQIF--IKG 137 (169)
Q Consensus 87 ~~C~~c~~a~~~L~~~------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vf--i~g 137 (169)
+||+.|+.....+++. ++.+-.+|++.++++ .+..+...+|.++ -+|
T Consensus 29 ~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~i~~~Pt~~~~~~g 83 (104)
T cd03004 29 PWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESL----CQQANIRAYPTIRLYPGN 83 (104)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHH----HHHcCCCcccEEEEEcCC
Confidence 7999999887766432 356778888776654 3334678888874 365
No 155
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=96.21 E-value=0.021 Score=41.20 Aligned_cols=50 Identities=12% Similarity=0.111 Sum_probs=30.9
Q ss_pred CCCCccHHHHHHHH----hcC--CCCeEEEEcCCCHHHH---HHHHHhcCCC-CCcEEEe
Q 030914 86 FPQCGFSSLAVRVL----GAY--NVPISARNILEDPELK---SAVKAFSHWP-TFPQIFI 135 (169)
Q Consensus 86 ~~~C~~c~~a~~~L----~~~--~v~~~~~di~~~~~~~---~~l~~~~g~~-t~P~vfi 135 (169)
.+|||.|+.+...| +++ ++.+-.+|++..+..+ ..+....+-. .+|.+.+
T Consensus 37 ~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~ 96 (119)
T cd02952 37 QSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLR 96 (119)
T ss_pred CCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEE
Confidence 35999999776655 443 3678888887644211 2333333444 8898855
No 156
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.025 Score=45.43 Aligned_cols=70 Identities=16% Similarity=-0.011 Sum_probs=54.2
Q ss_pred CCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhc-CCCCCcEEEeCCeEeeccHHHHHH
Q 030914 74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFS-HWPTFPQIFIKGEFIGGSDIILNM 149 (169)
Q Consensus 74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~-g~~t~P~vfi~g~~iGG~d~l~~~ 149 (169)
..|.||+. -.|||..|+.-.|+..||+|+.++++-.. --+.|.+.+ -...+|.+-.||+.|+-.-.+.+.
T Consensus 8 ~~vrL~~~-----w~sPfa~R~~iaL~~KgI~yE~veedl~~-Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveY 78 (231)
T KOG0406|consen 8 GTVKLLGM-----WFSPFAQRVRIALKLKGIPYEYVEEDLTN-KSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEY 78 (231)
T ss_pred CeEEEEEe-----ecChHHHHHHHHHHhcCCceEEEecCCCC-CCHHHHHhccccccCCEEEECCceehhhHHHHHH
Confidence 56889977 46999999999999999999998886432 223455665 578999999999998765555444
No 157
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=96.05 E-value=0.025 Score=38.33 Aligned_cols=45 Identities=20% Similarity=0.325 Sum_probs=29.3
Q ss_pred CCCccHHHHHHHHhc----C----CCCeEEEEcCC-CHHHHHHHHHhcCCCCCcEEEe
Q 030914 87 PQCGFSSLAVRVLGA----Y----NVPISARNILE-DPELKSAVKAFSHWPTFPQIFI 135 (169)
Q Consensus 87 ~~C~~c~~a~~~L~~----~----~v~~~~~di~~-~~~~~~~l~~~~g~~t~P~vfi 135 (169)
+||+.|++....+.+ . ++.+-.+|... ++.+.+. .+..++|.+++
T Consensus 28 ~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~----~~i~~~P~~~~ 81 (105)
T cd02998 28 PWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKK----YGVSGFPTLKF 81 (105)
T ss_pred CCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHh----CCCCCcCEEEE
Confidence 799999988776643 2 24455667666 4444333 35678998855
No 158
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=96.03 E-value=0.054 Score=39.10 Aligned_cols=69 Identities=19% Similarity=0.174 Sum_probs=46.4
Q ss_pred HHHHHHhhcC--CeEEEeecCCCCCCCc--cHH----------HHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCC
Q 030914 65 EVVEQDVKEN--PVMLYMKGVPEFPQCG--FSS----------LAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTF 130 (169)
Q Consensus 65 ~~i~~~~~~~--~Vvly~k~~~~~~~C~--~c~----------~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~ 130 (169)
+-+++.+..+ .|++|... +||+ +|+ .+.++|+..++.+-.+|++.++++.+ ..|-.++
T Consensus 17 ~nF~~~v~~~~~~vvv~f~a----~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~----~~~I~~i 88 (120)
T cd03065 17 KNYKQVLKKYDVLCLLYHEP----VESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAK----KLGLDEE 88 (120)
T ss_pred hhHHHHHHhCCceEEEEECC----CcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHH----HcCCccc
Confidence 4455555544 57777663 4665 497 23446667789999999998877544 4456777
Q ss_pred cEE--EeCCeEee
Q 030914 131 PQI--FIKGEFIG 141 (169)
Q Consensus 131 P~v--fi~g~~iG 141 (169)
|.+ |-||+.+.
T Consensus 89 PTl~lfk~G~~v~ 101 (120)
T cd03065 89 DSIYVFKDDEVIE 101 (120)
T ss_pred cEEEEEECCEEEE
Confidence 776 77998664
No 159
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=95.99 E-value=0.021 Score=43.99 Aligned_cols=62 Identities=15% Similarity=0.046 Sum_probs=47.9
Q ss_pred CCCccHHHHHHHHhcCCCCeEEEEcCC-C--HHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHH
Q 030914 87 PQCGFSSLAVRVLGAYNVPISARNILE-D--PELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILN 148 (169)
Q Consensus 87 ~~C~~c~~a~~~L~~~~v~~~~~di~~-~--~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~ 148 (169)
+.|++|.+++-+|...||+|+.+.++. . .....++.+.+...++|.+..+|..+.....+..
T Consensus 6 ~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~ 70 (210)
T TIGR01262 6 WRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSLAIIE 70 (210)
T ss_pred CCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEECCEEeecHHHHHH
Confidence 468999999999999999999887763 1 2223457777778899999999987776555544
No 160
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=95.97 E-value=0.022 Score=41.63 Aligned_cols=96 Identities=14% Similarity=0.120 Sum_probs=57.5
Q ss_pred CCCCcchHHHHHHHHhCCCCccc-ccCCCccccCCCCCcccccCCcccHHHHHHHHhhcCCeEEEeecCCCCCCCccHHH
Q 030914 16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKVDASGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSL 94 (169)
Q Consensus 16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~~~~~k~~s~~pt~~~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~ 94 (169)
.|.|++++++.++|.++|++|.. |+..++..+ +.+.+++.... . +
T Consensus 7 ~~~C~~C~ka~~~L~~~gi~~~~idi~~~~~~~-----------------~eL~~~l~~~~-----~-------g----- 52 (131)
T PRK01655 7 SPSCTSCRKAKAWLEEHDIPFTERNIFSSPLTI-----------------DEIKQILRMTE-----D-------G----- 52 (131)
T ss_pred CCCChHHHHHHHHHHHcCCCcEEeeccCChhhH-----------------HHHHHHHHHhc-----C-------C-----
Confidence 48999999999999999999988 998876542 33333333110 0 0
Q ss_pred HHHHHhcCCCCeEEEEcCC----CHHHHHHHHHhcCCCCCcEEEeCCeEeeccHH
Q 030914 95 AVRVLGAYNVPISARNILE----DPELKSAVKAFSHWPTFPQIFIKGEFIGGSDI 145 (169)
Q Consensus 95 a~~~L~~~~v~~~~~di~~----~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~ 145 (169)
+..+++..+-.|...++.. ..++.+.|.+...--.-|.|..++..+-|+++
T Consensus 53 ~~~lin~~~~~~k~l~~~~~~ls~~e~i~ll~~~p~LikRPIi~~~~~~~vG~~~ 107 (131)
T PRK01655 53 TDEIISTRSKVFQKLNVDVESLSLQDLIKLISDNPGLLRRPIIIDEKRLQVGYNE 107 (131)
T ss_pred HHHHHhcCcHHHHhCCCCcccCCHHHHHHHHHhCcceEeCCEEEECCEEEecCCH
Confidence 3344444444443332221 23444444443333345999999988888764
No 161
>PF13728 TraF: F plasmid transfer operon protein
Probab=95.87 E-value=0.029 Score=44.48 Aligned_cols=69 Identities=10% Similarity=0.265 Sum_probs=49.4
Q ss_pred cHHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHH----hcCCCCeEEEEcCCC-------HHHHHHHHHhcCCCCC
Q 030914 62 SLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVL----GAYNVPISARNILED-------PELKSAVKAFSHWPTF 130 (169)
Q Consensus 62 ~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L----~~~~v~~~~~di~~~-------~~~~~~l~~~~g~~t~ 130 (169)
.....|+++.+...+++|.+| .|++|.....+| +++|+++..++++.. ...-..+.+..|-.++
T Consensus 110 ~~~~~l~~la~~~gL~~F~~~-----~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~ 184 (215)
T PF13728_consen 110 KRDKALKQLAQKYGLFFFYRS-----DCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVT 184 (215)
T ss_pred HHHHHHHHHhhCeEEEEEEcC-----CCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcC
Confidence 345677888888889999995 699998766655 577899888888741 0011234444577899
Q ss_pred cEEEe
Q 030914 131 PQIFI 135 (169)
Q Consensus 131 P~vfi 135 (169)
|.+|+
T Consensus 185 Pal~L 189 (215)
T PF13728_consen 185 PALFL 189 (215)
T ss_pred CEEEE
Confidence 99987
No 162
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=95.79 E-value=0.058 Score=41.69 Aligned_cols=31 Identities=16% Similarity=0.331 Sum_probs=22.2
Q ss_pred CCeEEEeecCCCCCCCccHHHHHHHHhc--CCCCeEEE
Q 030914 74 NPVMLYMKGVPEFPQCGFSSLAVRVLGA--YNVPISAR 109 (169)
Q Consensus 74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~--~~v~~~~~ 109 (169)
..|++|+. |.||||+++.+.+.+ .++.+..+
T Consensus 79 ~~i~~f~D-----~~Cp~C~~~~~~l~~~~~~v~v~~~ 111 (197)
T cd03020 79 RVVYVFTD-----PDCPYCRKLEKELKPNADGVTVRIF 111 (197)
T ss_pred EEEEEEEC-----CCCccHHHHHHHHhhccCceEEEEE
Confidence 34667777 899999999998873 34544444
No 163
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=95.75 E-value=0.027 Score=38.73 Aligned_cols=47 Identities=19% Similarity=0.210 Sum_probs=29.8
Q ss_pred CCCccHHHHHHHHhcC------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe
Q 030914 87 PQCGFSSLAVRVLGAY------NVPISARNILEDPELKSAVKAFSHWPTFPQIFI 135 (169)
Q Consensus 87 ~~C~~c~~a~~~L~~~------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi 135 (169)
+||++|++....|.+. .+.+-.+|++.++. ..+....+..++|.+++
T Consensus 28 ~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~--~~~~~~~~i~~~Pt~~~ 80 (109)
T cd03002 28 PWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKN--KPLCGKYGVQGFPTLKV 80 (109)
T ss_pred CCCHHHHhhChHHHHHHHHhcCCceEEEEecCcccc--HHHHHHcCCCcCCEEEE
Confidence 7999999887666433 24555667765211 23444456788998855
No 164
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=0.089 Score=37.13 Aligned_cols=71 Identities=17% Similarity=0.227 Sum_probs=43.9
Q ss_pred HHHHHhhc-CCeEEEeecCCCCCCCccHHHHHHHHhcCC-----CCeEEEEcCCCHHHHHHHHHhcCCCCCcEE--EeCC
Q 030914 66 VVEQDVKE-NPVMLYMKGVPEFPQCGFSSLAVRVLGAYN-----VPISARNILEDPELKSAVKAFSHWPTFPQI--FIKG 137 (169)
Q Consensus 66 ~i~~~~~~-~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~-----v~~~~~di~~~~~~~~~l~~~~g~~t~P~v--fi~g 137 (169)
.....-.. ..||++..+ .||+.|+.+.-++.++- +.|-.+|+++ . ..+..-.+-..+|.+ |-+|
T Consensus 13 ~~~~~~~~~kliVvdF~a----~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde---~-~~~~~~~~V~~~PTf~f~k~g 84 (106)
T KOG0907|consen 13 VLSAAEAGDKLVVVDFYA----TWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE---L-EEVAKEFNVKAMPTFVFYKGG 84 (106)
T ss_pred HHHHhhCCCCeEEEEEEC----CCCcchhhhhhHHHHHHHHCCCCEEEEEeccc---C-HhHHHhcCceEeeEEEEEECC
Confidence 33333333 445665544 69999999998887664 4456778876 2 233344467888887 3466
Q ss_pred e----EeeccH
Q 030914 138 E----FIGGSD 144 (169)
Q Consensus 138 ~----~iGG~d 144 (169)
+ ++|+.-
T Consensus 85 ~~~~~~vGa~~ 95 (106)
T KOG0907|consen 85 EEVDEVVGANK 95 (106)
T ss_pred EEEEEEecCCH
Confidence 4 555543
No 165
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=95.67 E-value=0.051 Score=42.92 Aligned_cols=60 Identities=20% Similarity=0.258 Sum_probs=49.0
Q ss_pred CCCccHHHHHHHHhcCCCCeE--EEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914 87 PQCGFSSLAVRVLGAYNVPIS--ARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM 149 (169)
Q Consensus 87 ~~C~~c~~a~~~L~~~~v~~~--~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~ 149 (169)
-.||||.++...|...+++|. .+|+..-++ .++..++...+|.|-.||+.+-..+.+.+.
T Consensus 19 Gdcpf~qr~~m~L~~k~~~f~vttVd~~~kp~---~f~~~sp~~~~P~l~~d~~~~tDs~~Ie~~ 80 (221)
T KOG1422|consen 19 GDCPFCQRLFMTLELKGVPFKVTTVDLSRKPE---WFLDISPGGKPPVLKFDEKWVTDSDKIEEF 80 (221)
T ss_pred CCChhHHHHHHHHHHcCCCceEEEeecCCCcH---HHHhhCCCCCCCeEEeCCceeccHHHHHHH
Confidence 359999999999999999875 556655554 477788889999999999999888776655
No 166
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=95.64 E-value=0.063 Score=41.83 Aligned_cols=69 Identities=12% Similarity=0.073 Sum_probs=44.1
Q ss_pred cHHHHHHHHhhcC---CeEEEeecCCCCCCCccHHHHHHHHhcC-----CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEE
Q 030914 62 SLKEVVEQDVKEN---PVMLYMKGVPEFPQCGFSSLAVRVLGAY-----NVPISARNILEDPELKSAVKAFSHWPTFPQI 133 (169)
Q Consensus 62 ~~~~~i~~~~~~~---~Vvly~k~~~~~~~C~~c~~a~~~L~~~-----~v~~~~~di~~~~~~~~~l~~~~g~~t~P~v 133 (169)
+..++..++.... .|||+... +||+.|+.+...|+.+ .+.|..+|++.. ....+-..+|.+
T Consensus 88 s~~~f~~eV~~as~~~~VVV~Fya----~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~-------~~~~~i~~lPTl 156 (192)
T cd02988 88 SKPDYVREVTEASKDTWVVVHLYK----DGIPLCRLLNQHLSELARKFPDTKFVKIISTQC-------IPNYPDKNLPTI 156 (192)
T ss_pred CHHHHHHHHHhcCCCCEEEEEEEC----CCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh-------HhhCCCCCCCEE
Confidence 3456666666543 35554432 7999999988877544 366777777421 234467889987
Q ss_pred --EeCCeEee
Q 030914 134 --FIKGEFIG 141 (169)
Q Consensus 134 --fi~g~~iG 141 (169)
|-||+.|+
T Consensus 157 liyk~G~~v~ 166 (192)
T cd02988 157 LVYRNGDIVK 166 (192)
T ss_pred EEEECCEEEE
Confidence 55887654
No 167
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=95.62 E-value=0.026 Score=40.49 Aligned_cols=69 Identities=13% Similarity=0.217 Sum_probs=43.1
Q ss_pred HHHHHHHhhcCCeEE-EeecCCCCCCCccHHHHHHHHhcCC------CCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeC
Q 030914 64 KEVVEQDVKENPVML-YMKGVPEFPQCGFSSLAVRVLGAYN------VPISARNILEDPELKSAVKAFSHWPTFPQIFIK 136 (169)
Q Consensus 64 ~~~i~~~~~~~~Vvl-y~k~~~~~~~C~~c~~a~~~L~~~~------v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~ 136 (169)
.+.|.+. ....||| |+. .|||.|+.+-.+|.+.- +.+-.+|+++.+++.+.+. ...-||+= +|-+
T Consensus 6 d~~i~~~-~~klVVVdF~a-----~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~-I~amPtfv-ffkn 77 (114)
T cd02986 6 DQAIKST-AEKVLVLRFGR-----DEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFD-ISYIPSTI-FFFN 77 (114)
T ss_pred HHHHHhc-CCCEEEEEEeC-----CCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcC-ceeCcEEE-EEEC
Confidence 3444433 3344444 555 69999999988886553 5567789988887655442 12234433 5778
Q ss_pred CeEe
Q 030914 137 GEFI 140 (169)
Q Consensus 137 g~~i 140 (169)
|+|+
T Consensus 78 gkh~ 81 (114)
T cd02986 78 GQHM 81 (114)
T ss_pred CcEE
Confidence 9887
No 168
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=95.62 E-value=0.053 Score=39.49 Aligned_cols=94 Identities=11% Similarity=0.112 Sum_probs=57.7
Q ss_pred CCCCcchHHHHHHHHhCCCCccc-ccCCCccccCCCCCcccccCCcccHHHHHHHHhhcCCeEEEeecCCCCCCCccHHH
Q 030914 16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKVDASGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSL 94 (169)
Q Consensus 16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~~~~~k~~s~~pt~~~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~ 94 (169)
.|.|..++++.++|.++|++|.. |++.++-+ . +.|+.++....
T Consensus 8 ~p~Cst~RKA~~~L~~~gi~~~~~d~~~~p~t-------------~----~eL~~~l~~~g------------------- 51 (126)
T TIGR01616 8 KPGCANNARQKAALKASGHDVEVQDILKEPWH-------------A----DTLRPYFGNKP------------------- 51 (126)
T ss_pred CCCCHHHHHHHHHHHHCCCCcEEEeccCCCcC-------------H----HHHHHHHHHcC-------------------
Confidence 48899999999999999999988 99887543 2 33444433211
Q ss_pred HHHHHhcCCCCeEEEEcC----CCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHH
Q 030914 95 AVRVLGAYNVPISARNIL----EDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDI 145 (169)
Q Consensus 95 a~~~L~~~~v~~~~~di~----~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~ 145 (169)
+..+++..+-.|...+.. ...++.+.|.+...--.-|.|..+|..+-|+++
T Consensus 52 ~~~lin~~~~~~r~l~~~~~~ls~~e~i~lm~~~P~LIKRPIi~~~~~~~iGf~~ 106 (126)
T TIGR01616 52 VGSWFNRAAPRVKSGEVNPDSIDEASALALMVSDPLLIRRPLMDLGGIRCAGFDR 106 (126)
T ss_pred HHHHHhccchHhhhCCCCcccCCHHHHHHHHHhCcCeEeCCEEEECCEEEEcCCH
Confidence 234444444444332222 123444444443323345999999998889873
No 169
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=95.59 E-value=0.056 Score=36.63 Aligned_cols=50 Identities=20% Similarity=0.322 Sum_probs=30.5
Q ss_pred CCCccHHHHHHHHh----c----CCCCeEEEEcCC--CHHHHHHHHHhcCCCCCcEE--EeCCeEe
Q 030914 87 PQCGFSSLAVRVLG----A----YNVPISARNILE--DPELKSAVKAFSHWPTFPQI--FIKGEFI 140 (169)
Q Consensus 87 ~~C~~c~~a~~~L~----~----~~v~~~~~di~~--~~~~~~~l~~~~g~~t~P~v--fi~g~~i 140 (169)
+||+.|+.....+. . ..+.+..+|+.. ++. +....|-..+|.+ |-+|+.+
T Consensus 27 ~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~----~~~~~~i~~~Pt~~~~~~g~~~ 88 (104)
T cd02997 27 PWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDA----LKEEYNVKGFPTFKYFENGKFV 88 (104)
T ss_pred CCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHH----HHHhCCCccccEEEEEeCCCee
Confidence 79999998865442 2 224566667765 433 3344466788877 4456543
No 170
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=95.47 E-value=0.016 Score=41.30 Aligned_cols=96 Identities=16% Similarity=0.112 Sum_probs=56.8
Q ss_pred CCCCcchHHHHHHHHhCCCCccc-ccCCCccccCCCCCcccccCCcccHHHHHHHHhhcCCeEEEeecCCCCCCCccHHH
Q 030914 16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKVDASGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSL 94 (169)
Q Consensus 16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~~~~~k~~s~~pt~~~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~ 94 (169)
.|.|++++++.++|.++|++|.. |+..++.++ +.+.+++..-. . .
T Consensus 7 ~~~C~~c~ka~~~L~~~gi~~~~idi~~~~~~~-----------------~el~~~~~~~~-----~------------~ 52 (115)
T cd03032 7 SPSCSSCRKAKQWLEEHQIPFEERNLFKQPLTK-----------------EELKEILSLTE-----N------------G 52 (115)
T ss_pred CCCCHHHHHHHHHHHHCCCceEEEecCCCcchH-----------------HHHHHHHHHhc-----C------------C
Confidence 48899999999999999999988 988875442 23333333110 0 0
Q ss_pred HHHHHhcCCCCeEEEEcCC----CHHHHHHHHHhcCCCCCcEEEeCCeEeeccHH
Q 030914 95 AVRVLGAYNVPISARNILE----DPELKSAVKAFSHWPTFPQIFIKGEFIGGSDI 145 (169)
Q Consensus 95 a~~~L~~~~v~~~~~di~~----~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~ 145 (169)
+..+++..+-.|...++.. +.++.+.|.+...--.-|.|..+++.+=|+++
T Consensus 53 ~~~l~n~~~~~~k~l~~~~~~ls~~e~i~~l~~~p~LikRPii~~~~~~~vG~~~ 107 (115)
T cd03032 53 VEDIISTRSKAFKNLNIDIDELSLSELIRLISEHPSLLRRPIIIDEKRLQIGYNE 107 (115)
T ss_pred HHHHHhcCcHHHHHcCCCcccCCHHHHHHHHHhChhheeCCEEEeCCEEEeCCCH
Confidence 3344444444443333221 23344444443333345999988888877764
No 171
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=95.46 E-value=0.0055 Score=42.65 Aligned_cols=73 Identities=11% Similarity=0.178 Sum_probs=47.3
Q ss_pred hhhhhccCCCCCCCCcchHHHHHHHHhCCCCccc-ccCCCccccCCCCCcccccCCcccHHHHHHHHh--hcCCeEEEee
Q 030914 5 LSNLIFKGIASYPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKVDASGLSLKEVVEQDV--KENPVMLYMK 81 (169)
Q Consensus 5 ~~~~~~kg~~~~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~~~~~k~~s~~pt~~~~~~~~i~~~~--~~~~Vvly~k 81 (169)
-+++|.| |.|+|+.++.++|.++|++|.. |+..+++.. +..+.+.+.. ..-|+ ||..
T Consensus 9 ~Vvvysk-----~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~--------------~~~~~l~~~tg~~tvP~-Vfi~ 68 (99)
T TIGR02189 9 AVVIFSR-----SSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGK--------------DIENALSRLGCSPAVPA-VFVG 68 (99)
T ss_pred CEEEEEC-----CCCHHHHHHHHHHHHcCCCCEEEEcCCCccHH--------------HHHHHHHHhcCCCCcCe-EEEC
Confidence 3567777 8999999999999999999988 888765421 1223333322 12344 4666
Q ss_pred cCCCCCCCccHHHHHHHHhc
Q 030914 82 GVPEFPQCGFSSLAVRVLGA 101 (169)
Q Consensus 82 ~~~~~~~C~~c~~a~~~L~~ 101 (169)
| ..-+-|..+.++.++
T Consensus 69 g----~~iGG~ddl~~l~~~ 84 (99)
T TIGR02189 69 G----KLVGGLENVMALHIS 84 (99)
T ss_pred C----EEEcCHHHHHHHHHc
Confidence 5 345667776666443
No 172
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=95.34 E-value=0.082 Score=34.94 Aligned_cols=34 Identities=21% Similarity=0.298 Sum_probs=23.7
Q ss_pred cHHHHHHHHhhcC-CeEEEeecCCCCCCCccHHHHHHHH
Q 030914 62 SLKEVVEQDVKEN-PVMLYMKGVPEFPQCGFSSLAVRVL 99 (169)
Q Consensus 62 ~~~~~i~~~~~~~-~Vvly~k~~~~~~~C~~c~~a~~~L 99 (169)
++++.+.+..+++ +|+|+..+ +||+.|+...+.+
T Consensus 5 d~~~al~~A~~~~kpvlv~f~a----~wC~~C~~l~~~~ 39 (82)
T PF13899_consen 5 DYEEALAEAKKEGKPVLVDFGA----DWCPPCKKLEREV 39 (82)
T ss_dssp SHHHHHHHHHHHTSEEEEEEET----TTTHHHHHHHHHT
T ss_pred hHHHHHHHHHHcCCCEEEEEEC----CCCHhHHHHHHHH
Confidence 4566666666554 46666554 7999999888755
No 173
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=95.27 E-value=0.064 Score=43.97 Aligned_cols=65 Identities=15% Similarity=0.362 Sum_probs=40.4
Q ss_pred HHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHH----hcCCCCeEEEEcCCCHH-------HHHHHHHhcCCCCCcEEE
Q 030914 66 VVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVL----GAYNVPISARNILEDPE-------LKSAVKAFSHWPTFPQIF 134 (169)
Q Consensus 66 ~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L----~~~~v~~~~~di~~~~~-------~~~~l~~~~g~~t~P~vf 134 (169)
.++++.....++.|.. +||++|+.....| +++|+.+..++++.+.. .-..+.+..|-..+|.+|
T Consensus 160 ~l~~l~~k~~Lv~F~A-----swCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~ 234 (271)
T TIGR02740 160 VMKDLAKKSGLFFFFK-----SDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVF 234 (271)
T ss_pred HHHHhcCCeEEEEEEC-----CCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEE
Confidence 3444444444444555 5999999877665 45677777778765321 012244455788999996
Q ss_pred e
Q 030914 135 I 135 (169)
Q Consensus 135 i 135 (169)
+
T Consensus 235 L 235 (271)
T TIGR02740 235 L 235 (271)
T ss_pred E
Confidence 6
No 174
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=95.23 E-value=0.13 Score=34.04 Aligned_cols=57 Identities=16% Similarity=0.145 Sum_probs=42.8
Q ss_pred CCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHHH
Q 030914 87 PQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMH 150 (169)
Q Consensus 87 ~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~~ 150 (169)
+..++|.++.-+|+..|++|+.++....+. .+....+|.+-+||+.|+...-+..+.
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~~~~~~~~-------~~P~GkVP~L~~dg~vI~eS~aIl~yL 71 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVRCRANAEF-------MSPSGKVPFIRVGNQIVSEFGPIVQFV 71 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEEecCCccc-------cCCCCcccEEEECCEEEeCHHHHHHHH
Confidence 346789999999999999999886532111 222368999999999999887666543
No 175
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=95.19 E-value=0.081 Score=37.40 Aligned_cols=55 Identities=11% Similarity=0.125 Sum_probs=32.3
Q ss_pred CeEEEeecCCCCCCCccHHHHHHHHhcCC---------CCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe
Q 030914 75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYN---------VPISARNILEDPELKSAVKAFSHWPTFPQIFI 135 (169)
Q Consensus 75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~---------v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi 135 (169)
.|+|+..+ +||+.|+.....+++.. +.+-.+|.+.+. -..+.+..+...+|++++
T Consensus 21 ~vvV~f~a----~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~--~~~~~~~~~i~~~Pt~~l 84 (114)
T cd02992 21 AWLVEFYA----SWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE--NVALCRDFGVTGYPTLRY 84 (114)
T ss_pred eEEEEEEC----CCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh--hHHHHHhCCCCCCCEEEE
Confidence 45554443 79999998877664321 334445543322 123444456788998855
No 176
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=95.16 E-value=0.23 Score=32.62 Aligned_cols=66 Identities=21% Similarity=0.178 Sum_probs=44.0
Q ss_pred EEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHH--hcCCCCCcEEEeCCeEeeccHHHHH
Q 030914 77 MLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKA--FSHWPTFPQIFIKGEFIGGSDIILN 148 (169)
Q Consensus 77 vly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~--~~g~~t~P~vfi~g~~iGG~d~l~~ 148 (169)
.+|.. +..+.|.++.-+|.+.|++|+.+.++..++..+ ++. .....++|.+.+||..+....-+..
T Consensus 3 ~Ly~~-----~~~~~~~~v~~~l~~~gi~~e~~~v~~~~~~~~-~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~ 70 (79)
T cd03077 3 VLHYF-----NGRGRMESIRWLLAAAGVEFEEKFIESAEDLEK-LKKDGSLMFQQVPMVEIDGMKLVQTRAILN 70 (79)
T ss_pred EEEEe-----CCCChHHHHHHHHHHcCCCcEEEEeccHHHHHh-hccccCCCCCCCCEEEECCEEEeeHHHHHH
Confidence 45655 456778899999999999999888765332211 211 1225699999999877765444433
No 177
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=95.14 E-value=0.03 Score=38.96 Aligned_cols=31 Identities=29% Similarity=0.454 Sum_probs=27.1
Q ss_pred CCCCcchHHHHHHHHhCCCCccc-ccCCCccc
Q 030914 16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDT 46 (169)
Q Consensus 16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~ 46 (169)
.|.|++++++.++|.++|++|.. |+..++..
T Consensus 6 ~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~ 37 (105)
T cd02977 6 NPNCSTSRKALAWLEEHGIEYEFIDYLKEPPT 37 (105)
T ss_pred CCCCHHHHHHHHHHHHcCCCcEEEeeccCCCC
Confidence 48899999999999999999998 98877544
No 178
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=95.13 E-value=0.057 Score=40.19 Aligned_cols=35 Identities=17% Similarity=0.074 Sum_probs=26.9
Q ss_pred CCCccHHHHHHHHhcCC------CCeEEEEcCCCHHHHHHH
Q 030914 87 PQCGFSSLAVRVLGAYN------VPISARNILEDPELKSAV 121 (169)
Q Consensus 87 ~~C~~c~~a~~~L~~~~------v~~~~~di~~~~~~~~~l 121 (169)
+||+.|+.+-.+|++.- +.+-.+||++.+++.+.+
T Consensus 33 ~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y 73 (142)
T PLN00410 33 DWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMY 73 (142)
T ss_pred CCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHc
Confidence 69999999988886543 445788999888876655
No 179
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=95.12 E-value=0.089 Score=37.84 Aligned_cols=92 Identities=17% Similarity=0.232 Sum_probs=60.3
Q ss_pred CCCCcchHHHHHHHHhCCCCccc-ccCCCccccCCCCCcccccCCcccHHHHHHHHhhcCCeEEEeecCCCCCCCccHHH
Q 030914 16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKVDASGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSL 94 (169)
Q Consensus 16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~~~~~k~~s~~pt~~~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~ 94 (169)
.|.|+.|+.+..+|.++|++|.. |++.++-++ +.+.++++. ++.+
T Consensus 8 ~p~C~t~rka~~~L~~~gi~~~~~~y~~~~~s~-----------------~eL~~~l~~---------------~g~~-- 53 (117)
T COG1393 8 NPNCSTCRKALAWLEEHGIEYTFIDYLKTPPSR-----------------EELKKILSK---------------LGDG-- 53 (117)
T ss_pred CCCChHHHHHHHHHHHcCCCcEEEEeecCCCCH-----------------HHHHHHHHH---------------cCcc--
Confidence 58999999999999999999988 999876442 444444441 2222
Q ss_pred HHHHHhcCCCCeEEEEcCC----CHHHHHHHHHhcCCCCCcEEEeCCe-Eee
Q 030914 95 AVRVLGAYNVPISARNILE----DPELKSAVKAFSHWPTFPQIFIKGE-FIG 141 (169)
Q Consensus 95 a~~~L~~~~v~~~~~di~~----~~~~~~~l~~~~g~~t~P~vfi~g~-~iG 141 (169)
+..++...+-.|...+++. +++..++|.+-..----|.|+-+|. .||
T Consensus 54 ~~~li~t~~~~~r~L~~~~~~~~~~~~~~~i~~~~~LikRPivv~~~~~~iG 105 (117)
T COG1393 54 VEELINTRGTTYRELNLDKEDLSDEELIEALLENPSLIKRPIVVDNKKLRVG 105 (117)
T ss_pred HHHHHHhccchHHHcCCcccccChHHHHHHHHhChhhccCCeEEeCCceEec
Confidence 6677778877777766442 3344444433222234599988884 445
No 180
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=95.12 E-value=0.076 Score=41.13 Aligned_cols=55 Identities=16% Similarity=0.320 Sum_probs=36.6
Q ss_pred eEEEeecCCCCCCCccHHHH----HHHHhcCCCCeEEEEcCCCH-----HH----HHHHHHhcC--CCCCcEEEe
Q 030914 76 VMLYMKGVPEFPQCGFSSLA----VRVLGAYNVPISARNILEDP-----EL----KSAVKAFSH--WPTFPQIFI 135 (169)
Q Consensus 76 Vvly~k~~~~~~~C~~c~~a----~~~L~~~~v~~~~~di~~~~-----~~----~~~l~~~~g--~~t~P~vfi 135 (169)
++.|.. .|||+|++. +++-+++|+.+.-+.++.+. .+ ...+.+..| ...+|..|+
T Consensus 73 lV~Fwa-----swCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfL 142 (181)
T PRK13728 73 VVLFMQ-----GHCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFL 142 (181)
T ss_pred EEEEEC-----CCCHhHHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEE
Confidence 888888 489999987 55666778887777776431 11 122333444 268999987
No 181
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=95.11 E-value=0.065 Score=35.24 Aligned_cols=31 Identities=19% Similarity=0.385 Sum_probs=21.9
Q ss_pred eEEEeecCCCCCCCccHHHHHHHHhcC------CCCeEEEEc
Q 030914 76 VMLYMKGVPEFPQCGFSSLAVRVLGAY------NVPISARNI 111 (169)
Q Consensus 76 Vvly~k~~~~~~~C~~c~~a~~~L~~~------~v~~~~~di 111 (169)
|.+|.. +.||+|..+...|.+. ++.+..+.+
T Consensus 1 i~~f~d-----~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~ 37 (98)
T cd02972 1 IVEFFD-----PLCPYCYLFEPELEKLLYADDGGVRVVYRPF 37 (98)
T ss_pred CeEEEC-----CCCHhHHhhhHHHHHHHhhcCCcEEEEEecc
Confidence 456766 7899999998888664 355555544
No 182
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.07 E-value=0.089 Score=40.74 Aligned_cols=67 Identities=18% Similarity=0.185 Sum_probs=51.2
Q ss_pred EEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCH-HHHHHHHHhcCCCCCcEEEeCCe-EeeccHHHHH
Q 030914 77 MLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDP-ELKSAVKAFSHWPTFPQIFIKGE-FIGGSDIILN 148 (169)
Q Consensus 77 vly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~-~~~~~l~~~~g~~t~P~vfi~g~-~iGG~d~l~~ 148 (169)
.+|.. +.+|+|.++.-+|.++|++|+.+.|+... .....+...+...++|.+..+|- .+-....+.+
T Consensus 2 ~L~~~-----~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~gkVPvL~~~~~~~l~ES~AI~~ 70 (211)
T COG0625 2 KLYGS-----PTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPLGKVPALVDDDGEVLTESGAILE 70 (211)
T ss_pred eeecC-----CCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCCCCCCEEeeCCCCeeecHHHHHH
Confidence 35655 56799999999999999999998887664 45567888888899999998874 4544443333
No 183
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=95.05 E-value=0.031 Score=43.25 Aligned_cols=61 Identities=21% Similarity=0.315 Sum_probs=45.4
Q ss_pred CCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe-CCeEeec-cHHHHHH
Q 030914 87 PQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFI-KGEFIGG-SDIILNM 149 (169)
Q Consensus 87 ~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi-~g~~iGG-~d~l~~~ 149 (169)
+.||||.+|+-++--.+++++.+-++.|.+. -=..+.|...+|.+.- +|++.+- .|++.-.
T Consensus 7 dHCPfcvrarmi~Gl~nipve~~vL~nDDe~--Tp~rmiG~KqVPiL~Kedg~~m~ESlDIV~y~ 69 (215)
T COG2999 7 DHCPFCVRARMIFGLKNIPVELHVLLNDDEE--TPIRMIGQKQVPILQKEDGRAMPESLDIVHYV 69 (215)
T ss_pred ccChHHHHHHHHhhccCCChhhheeccCccc--ChhhhhcccccceEEccccccchhhhHHHHHH
Confidence 6899999999999999999988777655432 1124568999999865 6788875 5655543
No 184
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=95.00 E-value=0.13 Score=46.58 Aligned_cols=71 Identities=14% Similarity=0.179 Sum_probs=44.7
Q ss_pred ccHHHHHHHHhhc-CCeEEEeecCCCCCCCccHHHHHHH-H------hc-CCCCeEEEEcCCCHHHHHHHHHhcCCCCCc
Q 030914 61 LSLKEVVEQDVKE-NPVMLYMKGVPEFPQCGFSSLAVRV-L------GA-YNVPISARNILEDPELKSAVKAFSHWPTFP 131 (169)
Q Consensus 61 ~~~~~~i~~~~~~-~~Vvly~k~~~~~~~C~~c~~a~~~-L------~~-~~v~~~~~di~~~~~~~~~l~~~~g~~t~P 131 (169)
++.++.+++...+ ++|+|+... +||+.|+..... + +. .++.+..+|++.+.....++.+..+...+|
T Consensus 461 ~~l~~~l~~a~~~gK~VlVdF~A----~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v~g~P 536 (571)
T PRK00293 461 AELDQALAEAKGKGKPVMLDLYA----DWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNVLGLP 536 (571)
T ss_pred HHHHHHHHHHHhcCCcEEEEEEC----CcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCCCCCC
Confidence 4566667665543 456665544 799999987553 2 11 245566788876544334455556788899
Q ss_pred EEEe
Q 030914 132 QIFI 135 (169)
Q Consensus 132 ~vfi 135 (169)
.+++
T Consensus 537 t~~~ 540 (571)
T PRK00293 537 TILF 540 (571)
T ss_pred EEEE
Confidence 8855
No 185
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=94.86 E-value=0.15 Score=36.25 Aligned_cols=96 Identities=17% Similarity=0.126 Sum_probs=57.5
Q ss_pred CCCCcchHHHHHHHHhCCCCccc-ccCCCccccCCCCCcccccCCcccHHHHHHHHhhcCCeEEEeecCCCCCCCccHHH
Q 030914 16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKVDASGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSL 94 (169)
Q Consensus 16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~~~~~k~~s~~pt~~~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~ 94 (169)
.|.|..|+++.++|.++|+.|.. |+..++-+ . +.+.+++....+ + .
T Consensus 6 ~~~C~t~rkA~~~L~~~~i~~~~~di~~~p~t-------------~----~el~~~l~~~g~-----~-----------~ 52 (114)
T TIGR00014 6 NPRCSKSRNTLALLEDKGIEPEVVKYLKNPPT-------------K----SELEAIFAKLGL-----T-----------V 52 (114)
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEeccCCCcC-------------H----HHHHHHHHHcCC-----c-----------h
Confidence 58999999999999999999988 88876432 2 334444432111 0 0
Q ss_pred HHHHHhcCCCCeEEEEcCC----CHHHHHHHHHhcCCCCCcEEEeCCeEeeccH
Q 030914 95 AVRVLGAYNVPISARNILE----DPELKSAVKAFSHWPTFPQIFIKGEFIGGSD 144 (169)
Q Consensus 95 a~~~L~~~~v~~~~~di~~----~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d 144 (169)
+..+++..+-.|....+.. ..++.+.|.+...--.-|.|..+++.+=|++
T Consensus 53 ~~~lin~~~~~~~~l~~~~~~ls~~e~i~~l~~~P~LikRPIi~~~~~~~vG~~ 106 (114)
T TIGR00014 53 AREMIRTKEALYKELGLSDPNLSDQELLDAMVAHPILLERPIVVAGDGARIGRP 106 (114)
T ss_pred HHHHHhcCCcHHHHcCCCccCCCHHHHHHHHHHCcCcccCCeEEECCEEEEcCC
Confidence 1345555555554443322 2334344433322334599998888877875
No 186
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=94.78 E-value=0.11 Score=36.95 Aligned_cols=31 Identities=19% Similarity=0.214 Sum_probs=27.3
Q ss_pred CCCCcchHHHHHHHHhCCCCccc-ccCCCccc
Q 030914 16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDT 46 (169)
Q Consensus 16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~ 46 (169)
.|.|.-|+++.++|.++|++|.. |++.++-+
T Consensus 7 ~p~C~~crkA~~~L~~~gi~~~~~d~~~~p~s 38 (113)
T cd03033 7 KPGCANNARQKALLEAAGHEVEVRDLLTEPWT 38 (113)
T ss_pred CCCCHHHHHHHHHHHHcCCCcEEeehhcCCCC
Confidence 58899999999999999999988 99987543
No 187
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=94.59 E-value=0.19 Score=35.62 Aligned_cols=95 Identities=17% Similarity=0.160 Sum_probs=58.3
Q ss_pred CCCCcchHHHHHHHHhCCCCccc-ccCCCccccCCCCCcccccCCcccHHHHHHHHhhcCCeEEEeecCCCCCCCccHHH
Q 030914 16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKVDASGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSL 94 (169)
Q Consensus 16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~~~~~k~~s~~pt~~~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~ 94 (169)
.|.|+.|+++.++|.++|++|.. |+..++-+ . +.+..++.... . .
T Consensus 6 ~~~C~t~rkA~~~L~~~~i~~~~~di~~~~~t-------------~----~el~~~l~~~~-----~------------~ 51 (112)
T cd03034 6 NPRCSKSRNALALLEEAGIEPEIVEYLKTPPT-------------A----AELRELLAKLG-----I------------S 51 (112)
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEecccCCcC-------------H----HHHHHHHHHcC-----C------------C
Confidence 58999999999999999999988 88887533 2 33333332111 1 1
Q ss_pred HHHHHhcCCCCeEEEEcCC----CHHHHHHHHHhcCCCCCcEEEeCCeEeeccH
Q 030914 95 AVRVLGAYNVPISARNILE----DPELKSAVKAFSHWPTFPQIFIKGEFIGGSD 144 (169)
Q Consensus 95 a~~~L~~~~v~~~~~di~~----~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d 144 (169)
+..+++..+-.|...++.. ..++.+.|.+...--.-|.|+-+++.+=|+.
T Consensus 52 ~~~lin~~~~~y~~l~~~~~~ls~~e~i~ll~~~P~LikRPIi~~~~~~~vG~~ 105 (112)
T cd03034 52 PRDLLRTKEAPYKELGLADPELSDEELIDAMAAHPILIERPIVVTGDGAVLGRP 105 (112)
T ss_pred HHHHHhcCCchHHHcCCCccCCCHHHHHHHHHhCcCcccCCEEEECCEEEEcCC
Confidence 4456666655555443331 2334444444333334599998888777763
No 188
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=94.58 E-value=0.079 Score=42.34 Aligned_cols=50 Identities=14% Similarity=0.224 Sum_probs=33.7
Q ss_pred CCCccHHHHHHHHhcC----C--CCeEEEEcCCCHHHHHHHHHhcCCCCCcEEE--eCCeEe
Q 030914 87 PQCGFSSLAVRVLGAY----N--VPISARNILEDPELKSAVKAFSHWPTFPQIF--IKGEFI 140 (169)
Q Consensus 87 ~~C~~c~~a~~~L~~~----~--v~~~~~di~~~~~~~~~l~~~~g~~t~P~vf--i~g~~i 140 (169)
|||++|++....+++. + +.+..+|++.++++ .+..+-..+|.++ -+|+.+
T Consensus 62 pWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l----~~~~~I~~~PTl~~f~~G~~v 119 (224)
T PTZ00443 62 PWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNL----AKRFAIKGYPTLLLFDKGKMY 119 (224)
T ss_pred CCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHH----HHHcCCCcCCEEEEEECCEEE
Confidence 8999999988876443 2 45566677666543 4444677888774 477755
No 189
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=94.49 E-value=0.21 Score=37.08 Aligned_cols=77 Identities=14% Similarity=0.229 Sum_probs=53.5
Q ss_pred cCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeecc---HHHHHH
Q 030914 73 ENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGS---DIILNM 149 (169)
Q Consensus 73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~---d~l~~~ 149 (169)
...+++|-. |.|+=|..-.+.|+..|.++..+..+.-..+++.+--.-...+==+..|||.+|=|+ +.+..+
T Consensus 25 ~~~~~vyks-----PnCGCC~~w~~~mk~~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI~~l 99 (149)
T COG3019 25 ATEMVVYKS-----PNCGCCDEWAQHMKANGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVINGYYVEGHVPAEAIARL 99 (149)
T ss_pred eeeEEEEeC-----CCCccHHHHHHHHHhCCcEEEEeecCcHHHHHHhcCCChhhccccEEEEcCEEEeccCCHHHHHHH
Confidence 345777766 899999999999999998887777754444444332111223455789999999985 667776
Q ss_pred Hhccc
Q 030914 150 HQSGE 154 (169)
Q Consensus 150 ~~~g~ 154 (169)
.+++.
T Consensus 100 l~~~p 104 (149)
T COG3019 100 LAEKP 104 (149)
T ss_pred HhCCC
Confidence 66554
No 190
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=94.41 E-value=0.15 Score=44.94 Aligned_cols=50 Identities=22% Similarity=0.248 Sum_probs=31.9
Q ss_pred CCCccHHHHHHHHhcC-------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEE--EeCCe
Q 030914 87 PQCGFSSLAVRVLGAY-------NVPISARNILEDPELKSAVKAFSHWPTFPQI--FIKGE 138 (169)
Q Consensus 87 ~~C~~c~~a~~~L~~~-------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~v--fi~g~ 138 (169)
|||++|+.....|++. ++.+-.+|++.++. +......+..++|.+ |-+|.
T Consensus 381 pWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~--~~~~~~~~I~~~PTii~Fk~g~ 439 (463)
T TIGR00424 381 PWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQK--EFAKQELQLGSFPTILFFPKHS 439 (463)
T ss_pred CCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCcc--HHHHHHcCCCccceEEEEECCC
Confidence 8999999888776433 36677788876532 112233456678877 44553
No 191
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=94.41 E-value=0.097 Score=35.34 Aligned_cols=53 Identities=21% Similarity=0.316 Sum_probs=31.4
Q ss_pred CCeEEEeecCCCCCCCccHHHHHHHHhcC--------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe
Q 030914 74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAY--------NVPISARNILEDPELKSAVKAFSHWPTFPQIFI 135 (169)
Q Consensus 74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~--------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi 135 (169)
..++|+..+ +||++|+.....+.+. .+.+..+|.+.++ +....+..++|.+++
T Consensus 19 ~~~~v~f~~----~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-----~~~~~~~~~~Pt~~~ 79 (104)
T cd02995 19 KDVLVEFYA----PWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAND-----VPSEFVVDGFPTILF 79 (104)
T ss_pred CcEEEEEEC----CCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchh-----hhhhccCCCCCEEEE
Confidence 345544433 7999999887766432 2445666766542 222234478898754
No 192
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=94.37 E-value=0.13 Score=37.61 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=27.4
Q ss_pred CCCCcchHHHHHHHHhCCCCccc-ccCCCccc
Q 030914 16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDT 46 (169)
Q Consensus 16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~ 46 (169)
.|.|..++++.++|.++|++|.. |+..++.+
T Consensus 7 ~~~C~~crkA~~~L~~~~i~~~~~d~~~~~~s 38 (132)
T PRK13344 7 ISSCTSCKKAKTWLNAHQLSYKEQNLGKEPLT 38 (132)
T ss_pred CCCCHHHHHHHHHHHHcCCCeEEEECCCCCCC
Confidence 58899999999999999999988 99987654
No 193
>PRK12559 transcriptional regulator Spx; Provisional
Probab=94.35 E-value=0.11 Score=38.10 Aligned_cols=31 Identities=23% Similarity=0.281 Sum_probs=27.3
Q ss_pred CCCCcchHHHHHHHHhCCCCccc-ccCCCccc
Q 030914 16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDT 46 (169)
Q Consensus 16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~ 46 (169)
.|.|.+++++.++|.++|++|.. |+..++.+
T Consensus 7 ~~~C~~crkA~~~L~~~gi~~~~~di~~~~~s 38 (131)
T PRK12559 7 TASCASCRKAKAWLEENQIDYTEKNIVSNSMT 38 (131)
T ss_pred CCCChHHHHHHHHHHHcCCCeEEEEeeCCcCC
Confidence 48899999999999999999988 99887643
No 194
>PRK10357 putative glutathione S-transferase; Provisional
Probab=94.35 E-value=0.17 Score=38.72 Aligned_cols=62 Identities=16% Similarity=0.091 Sum_probs=44.3
Q ss_pred EEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe-CCeEeeccH
Q 030914 77 MLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFI-KGEFIGGSD 144 (169)
Q Consensus 77 vly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi-~g~~iGG~d 144 (169)
.+|.. +.||+++++.-+|...||+|+.+.+..... ...+.+++...++|.+.. +|.-+-...
T Consensus 2 ~Ly~~-----~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~-~~~~~~~nP~g~vP~L~~~~g~~l~eS~ 64 (202)
T PRK10357 2 KLIGS-----YTSPFVRKISILLLEKGITFEFVNELPYNA-DNGVAQYNPLGKVPALVTEEGECWFDSP 64 (202)
T ss_pred eeecC-----CCCchHHHHHHHHHHcCCCCeEEecCCCCC-chhhhhcCCccCCCeEEeCCCCeeecHH
Confidence 46665 579999999999999999999887764211 123455677789999985 565444433
No 195
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=94.26 E-value=0.48 Score=30.87 Aligned_cols=56 Identities=16% Similarity=0.143 Sum_probs=43.3
Q ss_pred CCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHHHh
Q 030914 88 QCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQ 151 (169)
Q Consensus 88 ~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~~~ 151 (169)
.+|+|-++..+|+-.|++|+.+... ++ ..+....+|.|..+|+.|+|++.+.+..+
T Consensus 15 ~sp~clk~~~~Lr~~~~~~~v~~~~-n~-------~~sp~gkLP~l~~~~~~i~d~~~Ii~~L~ 70 (73)
T cd03078 15 VDPECLAVLAYLKFAGAPLKVVPSN-NP-------WRSPTGKLPALLTSGTKISGPEKIIEYLR 70 (73)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEecC-CC-------CCCCCCccCEEEECCEEecChHHHHHHHH
Confidence 4699999999999999999766432 21 12334579999999999999988877543
No 196
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=94.23 E-value=0.18 Score=41.20 Aligned_cols=68 Identities=13% Similarity=0.288 Sum_probs=49.9
Q ss_pred HHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHH----hcCCCCeEEEEcCCC--HH-----HHHHHHHhcCCCCCc
Q 030914 63 LKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVL----GAYNVPISARNILED--PE-----LKSAVKAFSHWPTFP 131 (169)
Q Consensus 63 ~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L----~~~~v~~~~~di~~~--~~-----~~~~l~~~~g~~t~P 131 (169)
..+.|+++.+...++.|.+| .||+|.+..-+| +++|++...++++.. +. .-..+.+..|-..+|
T Consensus 141 ~~~~i~~la~~~gL~fFy~~-----~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~P 215 (256)
T TIGR02739 141 KEKAIQQLSQSYGLFFFYRG-----KSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFP 215 (256)
T ss_pred HHHHHHHHHhceeEEEEECC-----CCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCc
Confidence 45678888888999999995 699999876665 678999888888753 11 112233444678899
Q ss_pred EEEe
Q 030914 132 QIFI 135 (169)
Q Consensus 132 ~vfi 135 (169)
.+|+
T Consensus 216 al~L 219 (256)
T TIGR02739 216 ALYL 219 (256)
T ss_pred eEEE
Confidence 9987
No 197
>PLN02395 glutathione S-transferase
Probab=94.22 E-value=0.25 Score=38.19 Aligned_cols=68 Identities=15% Similarity=0.013 Sum_probs=49.5
Q ss_pred eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCC--HHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914 76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILED--PELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM 149 (169)
Q Consensus 76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~--~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~ 149 (169)
+.||.. +.| .+.++.-+|.+.|++|+.+.++.. .....++.+.+-..++|.+..+|..+.....+.+.
T Consensus 3 ~~ly~~-----~~~-~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~Y 72 (215)
T PLN02395 3 LKVYGP-----AFA-SPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIVDGDYKIFESRAIMRY 72 (215)
T ss_pred EEEEcC-----CcC-cHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHH
Confidence 567864 344 489999999999999998877532 23335677788888999999888777665555543
No 198
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=94.19 E-value=0.28 Score=35.16 Aligned_cols=64 Identities=19% Similarity=0.208 Sum_probs=37.7
Q ss_pred cCCeEEEeecCCCCCCCccHHHHHHHHhc-------C--CCCeEEEEcCCCHH---------------------HHHHHH
Q 030914 73 ENPVMLYMKGVPEFPQCGFSSLAVRVLGA-------Y--NVPISARNILEDPE---------------------LKSAVK 122 (169)
Q Consensus 73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~~-------~--~v~~~~~di~~~~~---------------------~~~~l~ 122 (169)
.+.|+|+.-+ +||+.|++....|++ . ++.+..++++.+++ ....+.
T Consensus 17 Gk~vll~F~a----twC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 92 (132)
T cd02964 17 GKTVGLYFSA----SWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLE 92 (132)
T ss_pred CCEEEEEEEC----CCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHH
Confidence 4456666554 599999987665532 2 34455556655431 223455
Q ss_pred HhcCCCCCcEEE-eC--CeEe
Q 030914 123 AFSHWPTFPQIF-IK--GEFI 140 (169)
Q Consensus 123 ~~~g~~t~P~vf-i~--g~~i 140 (169)
+..+...+|.++ |+ |+.+
T Consensus 93 ~~~~v~~iPt~~lid~~G~iv 113 (132)
T cd02964 93 KQFKVEGIPTLVVLKPDGDVV 113 (132)
T ss_pred HHcCCCCCCEEEEECCCCCEE
Confidence 555677889887 43 5544
No 199
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=94.16 E-value=0.27 Score=35.04 Aligned_cols=65 Identities=22% Similarity=0.281 Sum_probs=38.3
Q ss_pred hcCCeEEEeecCCCCCCCccHHHHHHHHhcC---------CCCeEEEEcCCCHH-H-------------------HHHHH
Q 030914 72 KENPVMLYMKGVPEFPQCGFSSLAVRVLGAY---------NVPISARNILEDPE-L-------------------KSAVK 122 (169)
Q Consensus 72 ~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~---------~v~~~~~di~~~~~-~-------------------~~~l~ 122 (169)
+...|+||.-. +||+.|++....|.+. ++.+..++++.+.+ . ...+.
T Consensus 17 ~gk~vll~Fwa----~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (131)
T cd03009 17 EGKTVGLYFSA----SWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLN 92 (131)
T ss_pred CCcEEEEEEEC----CCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHH
Confidence 34557776654 5999999876665422 34455556654432 1 12344
Q ss_pred HhcCCCCCcEEEe---CCeEe
Q 030914 123 AFSHWPTFPQIFI---KGEFI 140 (169)
Q Consensus 123 ~~~g~~t~P~vfi---~g~~i 140 (169)
+..|...+|.+|+ +|+.+
T Consensus 93 ~~~~v~~~P~~~lid~~G~i~ 113 (131)
T cd03009 93 RTFKIEGIPTLIILDADGEVV 113 (131)
T ss_pred HHcCCCCCCEEEEECCCCCEE
Confidence 4557778888865 45543
No 200
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=94.15 E-value=0.018 Score=37.26 Aligned_cols=31 Identities=16% Similarity=0.233 Sum_probs=27.0
Q ss_pred CCCcchHHHHHHHHhCCCCccc-ccCCCcccc
Q 030914 17 PSARSSRIVSGSLYHNGMKYST-DVPNDPDTH 47 (169)
Q Consensus 17 p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~~ 47 (169)
|.|+++.++.++|.++|++|.. |+..+++.+
T Consensus 9 ~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~ 40 (73)
T cd03027 9 LGCEDCTAVRLFLREKGLPYVEINIDIFPERK 40 (73)
T ss_pred CCChhHHHHHHHHHHCCCceEEEECCCCHHHH
Confidence 8999999999999999999988 888775543
No 201
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=94.14 E-value=0.29 Score=37.68 Aligned_cols=65 Identities=14% Similarity=0.189 Sum_probs=36.3
Q ss_pred hcCCeEEEeecCCCCCCCccHHHHHHHH----hcCCCCeEEEEcCCCHHHHHHHHH----------------hcCCCCCc
Q 030914 72 KENPVMLYMKGVPEFPQCGFSSLAVRVL----GAYNVPISARNILEDPELKSAVKA----------------FSHWPTFP 131 (169)
Q Consensus 72 ~~~~Vvly~k~~~~~~~C~~c~~a~~~L----~~~~v~~~~~di~~~~~~~~~l~~----------------~~g~~t~P 131 (169)
+.++++||.-+ +|||.|++....+ ++.++.+.-+..+..++.+..+++ ..|...+|
T Consensus 73 ~gk~vvl~F~a----twCp~C~~~lp~l~~~~~~~~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P 148 (189)
T TIGR02661 73 PGRPTLLMFTA----PSCPVCDKLFPIIKSIARAEETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIP 148 (189)
T ss_pred CCCEEEEEEEC----CCChhHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccc
Confidence 34456655443 6999999765544 445666655554333333333332 22446789
Q ss_pred EEEe---CCeEe
Q 030914 132 QIFI---KGEFI 140 (169)
Q Consensus 132 ~vfi---~g~~i 140 (169)
..|+ +|+.+
T Consensus 149 ~~~lID~~G~I~ 160 (189)
T TIGR02661 149 YGVLLDQDGKIR 160 (189)
T ss_pred eEEEECCCCeEE
Confidence 8776 46544
No 202
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=94.09 E-value=0.19 Score=35.18 Aligned_cols=68 Identities=16% Similarity=0.166 Sum_probs=41.5
Q ss_pred cHHHHHHHHhhcCC-eEEEeecCCCCCCCccHHHHHH-HHhcCCC------CeEE--EEcCCCHHHHHHHHHhcCCCCCc
Q 030914 62 SLKEVVEQDVKENP-VMLYMKGVPEFPQCGFSSLAVR-VLGAYNV------PISA--RNILEDPELKSAVKAFSHWPTFP 131 (169)
Q Consensus 62 ~~~~~i~~~~~~~~-Vvly~k~~~~~~~C~~c~~a~~-~L~~~~v------~~~~--~di~~~~~~~~~l~~~~g~~t~P 131 (169)
+.++.++...++++ ++||..+ ++|++|+...+ +|..-.| .|.. .|+.. ++.. .+....+...+|
T Consensus 5 s~~~a~~~Ak~~~K~llv~~~~----~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~-~e~~-~~~~~~~~~~~P 78 (114)
T cd02958 5 SFEDAKQEAKSEKKWLLVYLQS----EDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDS-SEGQ-RFLQSYKVDKYP 78 (114)
T ss_pred CHHHHHHHHHhhCceEEEEEec----CCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCC-ccHH-HHHHHhCccCCC
Confidence 56677777776554 7788776 79999998654 4433332 2433 35543 3333 355555677899
Q ss_pred EEEe
Q 030914 132 QIFI 135 (169)
Q Consensus 132 ~vfi 135 (169)
.+.+
T Consensus 79 ~~~~ 82 (114)
T cd02958 79 HIAI 82 (114)
T ss_pred eEEE
Confidence 8843
No 203
>PRK10026 arsenate reductase; Provisional
Probab=94.08 E-value=0.25 Score=36.74 Aligned_cols=101 Identities=15% Similarity=0.195 Sum_probs=59.5
Q ss_pred CCCCcchHHHHHHHHhCCCCccc-ccCCCccccCCCCCcccccCCcccHHHHHHHHhhcCCeEEEeecCCCCCCCccHHH
Q 030914 16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKVDASGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSL 94 (169)
Q Consensus 16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~~~~~k~~s~~pt~~~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~ 94 (169)
.|.|+.|+++.++|.++|++|.. |++.++-+ .+.|..++....+ .
T Consensus 9 ~p~Cst~RKA~~wL~~~gi~~~~~d~~~~ppt-----------------~~eL~~~l~~~g~-----------------~ 54 (141)
T PRK10026 9 NPACGTSRNTLEMIRNSGTEPTIIHYLETPPT-----------------RDELVKLIADMGI-----------------S 54 (141)
T ss_pred CCCCHHHHHHHHHHHHCCCCcEEEeeeCCCcC-----------------HHHHHHHHHhCCC-----------------C
Confidence 58999999999999999999988 99987543 2444444442211 1
Q ss_pred HHHHHhcCCCCeEEEEcCC----CHHHHHHHHHhcCCCCCcEEEeC-CeEeec-cHHHHHHH
Q 030914 95 AVRVLGAYNVPISARNILE----DPELKSAVKAFSHWPTFPQIFIK-GEFIGG-SDIILNMH 150 (169)
Q Consensus 95 a~~~L~~~~v~~~~~di~~----~~~~~~~l~~~~g~~t~P~vfi~-g~~iGG-~d~l~~~~ 150 (169)
+..+++..+-.|....+.. ..++.+.|.+...--.-|.|+-+ |..+|- .+.+.++.
T Consensus 55 ~~~lint~~~~yr~L~~~~~~ls~~e~l~ll~~~P~LIKRPIi~~~~~a~i~Rp~e~v~~~l 116 (141)
T PRK10026 55 VRALLRKNVEPYEELGLAEDKFTDDQLIDFMLQHPILINRPIVVTPLGTRLCRPSEVVLEIL 116 (141)
T ss_pred HHHHHHcCCchHHHcCCCccCCCHHHHHHHHHhCccceeCcEEEcCCCeEEECCHHHHHHHh
Confidence 3455555555554433322 23343444332222244998875 566665 34455554
No 204
>PRK10853 putative reductase; Provisional
Probab=94.06 E-value=0.21 Score=35.90 Aligned_cols=30 Identities=17% Similarity=0.130 Sum_probs=26.6
Q ss_pred CCCCcchHHHHHHHHhCCCCccc-ccCCCcc
Q 030914 16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPD 45 (169)
Q Consensus 16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~ 45 (169)
.|.|+.|+++.++|.++|+.|.. |+..++-
T Consensus 7 ~~~C~t~rkA~~~L~~~~i~~~~~d~~k~p~ 37 (118)
T PRK10853 7 IKNCDTIKKARRWLEAQGIDYRFHDYRVDGL 37 (118)
T ss_pred CCCCHHHHHHHHHHHHcCCCcEEeehccCCc
Confidence 58899999999999999999988 8888753
No 205
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=94.06 E-value=0.0046 Score=38.53 Aligned_cols=34 Identities=24% Similarity=0.457 Sum_probs=28.6
Q ss_pred CCCcchHHHHHHHHhCCCCccc-ccCCCccccCCC
Q 030914 17 PSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDF 50 (169)
Q Consensus 17 p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~~~~~ 50 (169)
|.|+++.++.+.|++.|++|.. |+..+++.++.+
T Consensus 7 ~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l 41 (60)
T PF00462_consen 7 PGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREEL 41 (60)
T ss_dssp TTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHH
T ss_pred CCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHH
Confidence 8999999999999999999988 998886444333
No 206
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=94.03 E-value=0.13 Score=36.54 Aligned_cols=31 Identities=26% Similarity=0.400 Sum_probs=27.1
Q ss_pred CCCCcchHHHHHHHHhCCCCccc-ccCCCccc
Q 030914 16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDT 46 (169)
Q Consensus 16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~ 46 (169)
.|.|++++++.++|.++|++|.. |+..++.+
T Consensus 6 ~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~ 37 (117)
T TIGR01617 6 SPNCTTCKKARRWLEANGIEYQFIDIGEDGPT 37 (117)
T ss_pred CCCCHHHHHHHHHHHHcCCceEEEecCCChhh
Confidence 58899999999999999999988 88877544
No 207
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=94.02 E-value=0.21 Score=40.51 Aligned_cols=68 Identities=13% Similarity=0.291 Sum_probs=48.6
Q ss_pred HHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHH----hcCCCCeEEEEcCC--CHHH-----HHHHHHhcCCCCCc
Q 030914 63 LKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVL----GAYNVPISARNILE--DPEL-----KSAVKAFSHWPTFP 131 (169)
Q Consensus 63 ~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L----~~~~v~~~~~di~~--~~~~-----~~~l~~~~g~~t~P 131 (169)
..+.|+++.+...++.|.+| .||+|.+.--+| +.+|++...+.++. .+.. -....+..|...+|
T Consensus 134 ~~~~i~~la~~~GL~fFy~s-----~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~P 208 (248)
T PRK13703 134 QRQAIAKLAEHYGLMFFYRG-----QDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFP 208 (248)
T ss_pred HHHHHHHHHhcceEEEEECC-----CCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccc
Confidence 35568888889999999995 699999766555 67788888888874 2221 11222445678899
Q ss_pred EEEe
Q 030914 132 QIFI 135 (169)
Q Consensus 132 ~vfi 135 (169)
.+|+
T Consensus 209 Al~L 212 (248)
T PRK13703 209 ALML 212 (248)
T ss_pred eEEE
Confidence 9987
No 208
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=93.94 E-value=0.36 Score=34.14 Aligned_cols=66 Identities=21% Similarity=0.470 Sum_probs=46.1
Q ss_pred hcCCeEEEeecCCCCCCCccHHHHHHHHhcC------CCCeEEEEcCCCHHHHHHHHHhcC-CCCCcEEEe--CCeEee
Q 030914 72 KENPVMLYMKGVPEFPQCGFSSLAVRVLGAY------NVPISARNILEDPELKSAVKAFSH-WPTFPQIFI--KGEFIG 141 (169)
Q Consensus 72 ~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~------~v~~~~~di~~~~~~~~~l~~~~g-~~t~P~vfi--~g~~iG 141 (169)
...+++||=-+| .||-+..|.+-|++. .+++-.+||..+..+-.++.+..| ...-||+++ ||+.|-
T Consensus 18 ~~~~~~iFKHSt----~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili~~g~~v~ 92 (105)
T PF11009_consen 18 KEKPVLIFKHST----RCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILIKNGKVVW 92 (105)
T ss_dssp --SEEEEEEE-T----T-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEEEETTEEEE
T ss_pred ccCcEEEEEeCC----CChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEEECCEEEE
Confidence 356799997775 799999998866432 288999999999999999988877 346799865 888664
No 209
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=93.89 E-value=0.37 Score=37.39 Aligned_cols=54 Identities=13% Similarity=0.097 Sum_probs=41.8
Q ss_pred eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCC--CHHHHHHHHHhcCCCCCcEEEe
Q 030914 76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILE--DPELKSAVKAFSHWPTFPQIFI 135 (169)
Q Consensus 76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~--~~~~~~~l~~~~g~~t~P~vfi 135 (169)
+.||.. + +++|.++.-+|.+.|++|+.++|+. ++....++.+.+....+|.+..
T Consensus 2 ~~Ly~~-----~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~ 57 (215)
T PRK13972 2 IDLYFA-----P-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVD 57 (215)
T ss_pred eEEEEC-----C-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCCCCCEEEe
Confidence 357755 3 5889999999999999999887754 3333456778888889999987
No 210
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=93.86 E-value=0.24 Score=42.46 Aligned_cols=65 Identities=17% Similarity=0.303 Sum_probs=40.6
Q ss_pred HHHHHhhcCC-eE-EEeecCCCCCCCccHHHHHHHHh-------cCC--CCeEEEEcCCCHHHHHHHHHhcCCCCCcEE-
Q 030914 66 VVEQDVKENP-VM-LYMKGVPEFPQCGFSSLAVRVLG-------AYN--VPISARNILEDPELKSAVKAFSHWPTFPQI- 133 (169)
Q Consensus 66 ~i~~~~~~~~-Vv-ly~k~~~~~~~C~~c~~a~~~L~-------~~~--v~~~~~di~~~~~~~~~l~~~~g~~t~P~v- 133 (169)
.+.++++.++ ++ .|.. +||++|++....+. ..+ +.+..+|.+.+.++. +..+...+|.+
T Consensus 10 ~~~~~i~~~~~~~v~f~a-----~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~----~~~~i~~~Pt~~ 80 (462)
T TIGR01130 10 NFDDFIKSHEFVLVEFYA-----PWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLA----QKYGVSGYPTLK 80 (462)
T ss_pred HHHHHHhcCCCEEEEEEC-----CCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHH----HhCCCccccEEE
Confidence 3445555555 34 4444 89999998765443 334 677788887775543 33467788887
Q ss_pred -EeCCeE
Q 030914 134 -FIKGEF 139 (169)
Q Consensus 134 -fi~g~~ 139 (169)
|-+|+.
T Consensus 81 ~~~~g~~ 87 (462)
T TIGR01130 81 IFRNGED 87 (462)
T ss_pred EEeCCcc
Confidence 445654
No 211
>PTZ00102 disulphide isomerase; Provisional
Probab=93.46 E-value=0.3 Score=42.41 Aligned_cols=65 Identities=20% Similarity=0.281 Sum_probs=37.9
Q ss_pred HHHHHhhcCC-eEEEeecCCCCCCCccHHHHHHHH-------hcC--CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEE-
Q 030914 66 VVEQDVKENP-VMLYMKGVPEFPQCGFSSLAVRVL-------GAY--NVPISARNILEDPELKSAVKAFSHWPTFPQIF- 134 (169)
Q Consensus 66 ~i~~~~~~~~-Vvly~k~~~~~~~C~~c~~a~~~L-------~~~--~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vf- 134 (169)
.+++.++.++ ++|+..+ +||++|++....+ ... ++.+-.+|...+.++. +..+-..+|.++
T Consensus 41 ~f~~~i~~~~~~lv~f~a----~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~----~~~~i~~~Pt~~~ 112 (477)
T PTZ00102 41 TFDKFITENEIVLVKFYA----PWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELA----QEFGVRGYPTIKF 112 (477)
T ss_pred hHHHHHhcCCcEEEEEEC----CCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHH----HhcCCCcccEEEE
Confidence 3444454443 4444332 8999999776533 222 3667777877766543 334567788774
Q ss_pred -eCCe
Q 030914 135 -IKGE 138 (169)
Q Consensus 135 -i~g~ 138 (169)
-+|.
T Consensus 113 ~~~g~ 117 (477)
T PTZ00102 113 FNKGN 117 (477)
T ss_pred EECCc
Confidence 3554
No 212
>PLN02309 5'-adenylylsulfate reductase
Probab=93.34 E-value=0.24 Score=43.65 Aligned_cols=46 Identities=20% Similarity=0.325 Sum_probs=29.7
Q ss_pred CCCccHHHHHHHHhcC-------CCCeEEEEcC-CCHHHHHHHHHhcCCCCCcEEEe
Q 030914 87 PQCGFSSLAVRVLGAY-------NVPISARNIL-EDPELKSAVKAFSHWPTFPQIFI 135 (169)
Q Consensus 87 ~~C~~c~~a~~~L~~~-------~v~~~~~di~-~~~~~~~~l~~~~g~~t~P~vfi 135 (169)
|||++|+.+...|.+. ++.+-.+|++ .+.++ ..+..+...+|.+++
T Consensus 375 pWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~l---a~~~~~I~~~PTil~ 428 (457)
T PLN02309 375 PWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEF---AKQELQLGSFPTILL 428 (457)
T ss_pred CCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHH---HHhhCCCceeeEEEE
Confidence 8999999887766433 4666777776 33332 222346678888743
No 213
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=93.26 E-value=0.028 Score=36.74 Aligned_cols=30 Identities=20% Similarity=0.331 Sum_probs=25.9
Q ss_pred CCCCcchHHHHHHHHhCCCCccc-ccCCCcc
Q 030914 16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPD 45 (169)
Q Consensus 16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~ 45 (169)
.|.|+++.++.++|.++|++|.. |+..+++
T Consensus 6 ~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~ 36 (79)
T TIGR02181 6 KPYCPYCTRAKALLSSKGVTFTEIRVDGDPA 36 (79)
T ss_pred cCCChhHHHHHHHHHHcCCCcEEEEecCCHH
Confidence 48899999999999999999988 8876653
No 214
>PRK10638 glutaredoxin 3; Provisional
Probab=93.19 E-value=0.033 Score=37.06 Aligned_cols=30 Identities=10% Similarity=0.190 Sum_probs=25.8
Q ss_pred CCCCcchHHHHHHHHhCCCCccc-ccCCCcc
Q 030914 16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPD 45 (169)
Q Consensus 16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~ 45 (169)
.|.|+|+.++.++|.+.|++|.. |+..+++
T Consensus 9 ~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~ 39 (83)
T PRK10638 9 KATCPFCHRAKALLNSKGVSFQEIPIDGDAA 39 (83)
T ss_pred CCCChhHHHHHHHHHHcCCCcEEEECCCCHH
Confidence 47899999999999999999988 8866543
No 215
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=92.99 E-value=0.42 Score=34.74 Aligned_cols=54 Identities=17% Similarity=0.285 Sum_probs=35.6
Q ss_pred HHHHHHhcCCCCeEEEEcCCCH-------HHHHHHHHhcCCCCCcEEEeCCeEe--eccHHHHH
Q 030914 94 LAVRVLGAYNVPISARNILEDP-------ELKSAVKAFSHWPTFPQIFIKGEFI--GGSDIILN 148 (169)
Q Consensus 94 ~a~~~L~~~~v~~~~~di~~~~-------~~~~~l~~~~g~~t~P~vfi~g~~i--GG~d~l~~ 148 (169)
.+.+.|++.|+++..+++.++| .+++.|. ..|...+|.++|||+.+ |.|-...+
T Consensus 31 ~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~-~~G~e~LPitlVdGeiv~~G~YPt~eE 93 (123)
T PF06953_consen 31 ADLDWLKEQGVEVERYNLAQNPQAFVENPEVNQLLQ-TEGAEALPITLVDGEIVKTGRYPTNEE 93 (123)
T ss_dssp HHHHHHHHTT-EEEEEETTT-TTHHHHSHHHHHHHH-HH-GGG-SEEEETTEEEEESS---HHH
T ss_pred HHHHHHHhCCceEEEEccccCHHHHHhCHHHHHHHH-HcCcccCCEEEECCEEEEecCCCCHHH
Confidence 5667889999999999999865 4444443 35788999999999976 66654333
No 216
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=92.86 E-value=0.45 Score=35.68 Aligned_cols=59 Identities=14% Similarity=0.317 Sum_probs=36.3
Q ss_pred hcCCeEEEeecCCCCCCCccHHHHHHHHh----cCCCCeEEEEcCCCHH---------HHHHHHHhc---CCCCCcEEEe
Q 030914 72 KENPVMLYMKGVPEFPQCGFSSLAVRVLG----AYNVPISARNILEDPE---------LKSAVKAFS---HWPTFPQIFI 135 (169)
Q Consensus 72 ~~~~Vvly~k~~~~~~~C~~c~~a~~~L~----~~~v~~~~~di~~~~~---------~~~~l~~~~---g~~t~P~vfi 135 (169)
....++.|.. +|||.|++..-.|+ ++++.+..++++.... ..+.+.... +-..+|..|+
T Consensus 50 ~~~~lvnFWA-----sWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~L 124 (153)
T TIGR02738 50 DDYALVFFYQ-----STCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFL 124 (153)
T ss_pred CCCEEEEEEC-----CCChhHHHHHHHHHHHHHHcCCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEE
Confidence 3445777776 59999998777664 5577776777764310 012223333 4578899866
No 217
>PRK11752 putative S-transferase; Provisional
Probab=92.71 E-value=0.58 Score=37.93 Aligned_cols=73 Identities=16% Similarity=0.114 Sum_probs=51.4
Q ss_pred HhhcCCeEEEeecCCCCCCCccHHHHHHHHhcC------CCCeEEEEcCC--CHHHHHHHHHhcCCCCCcEEEeCC----
Q 030914 70 DVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAY------NVPISARNILE--DPELKSAVKAFSHWPTFPQIFIKG---- 137 (169)
Q Consensus 70 ~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~------~v~~~~~di~~--~~~~~~~l~~~~g~~t~P~vfi~g---- 137 (169)
....+++.||+. .+++|.++.-+|.+. |++|+.+.|+- .+....++.+.+...++|.+..++
T Consensus 39 ~~~~~~~~Ly~~------~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~~dg~~~ 112 (264)
T PRK11752 39 PVGKHPLQLYSL------GTPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLDRSGNPP 112 (264)
T ss_pred CCCCCCeEEecC------CCCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEeCCCCCC
Confidence 345568999975 389999999999986 88898776643 333345677788888999998753
Q ss_pred eEeeccHHHHH
Q 030914 138 EFIGGSDIILN 148 (169)
Q Consensus 138 ~~iGG~d~l~~ 148 (169)
..+.....+..
T Consensus 113 ~~L~ES~AIl~ 123 (264)
T PRK11752 113 IRVFESGAILL 123 (264)
T ss_pred eEEEcHHHHHH
Confidence 34544444443
No 218
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=92.71 E-value=0.4 Score=35.79 Aligned_cols=27 Identities=11% Similarity=0.148 Sum_probs=19.7
Q ss_pred hhcCCeEEEeecCCCCCCCccHHHHHHHHhc
Q 030914 71 VKENPVMLYMKGVPEFPQCGFSSLAVRVLGA 101 (169)
Q Consensus 71 ~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~ 101 (169)
.+...|+||.-. .|||.|++..-.|.+
T Consensus 23 ~kgk~vlL~FwA----sWCppCr~e~P~L~~ 49 (146)
T cd03008 23 LENRVLLLFFGA----VVSPQCQLFAPKLKD 49 (146)
T ss_pred hCCCEEEEEEEC----CCChhHHHHHHHHHH
Confidence 345567777665 599999998877754
No 219
>smart00594 UAS UAS domain.
Probab=92.44 E-value=1.5 Score=31.21 Aligned_cols=69 Identities=20% Similarity=0.232 Sum_probs=42.6
Q ss_pred ccHHHHHHHHhhcC-CeEEEeecCCCCCCCccHHHHHH-HHhcCCC------CeEE--EEcCCCHHHHHHHHHhcCCCCC
Q 030914 61 LSLKEVVEQDVKEN-PVMLYMKGVPEFPQCGFSSLAVR-VLGAYNV------PISA--RNILEDPELKSAVKAFSHWPTF 130 (169)
Q Consensus 61 ~~~~~~i~~~~~~~-~Vvly~k~~~~~~~C~~c~~a~~-~L~~~~v------~~~~--~di~~~~~~~~~l~~~~g~~t~ 130 (169)
.+.++.++...+.. .++||..+ ++|+.|....+ +|..-.| .|.. .|+...+. ..+....+..++
T Consensus 14 gs~~~a~~~Ak~~~K~~lv~~~~----~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg--~~l~~~~~~~~~ 87 (122)
T smart00594 14 GSLEAAKQEASRQRRLLWLYLHS----QDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEG--QRVSQFYKLDSF 87 (122)
T ss_pred CCHHHHHHHHHhhcCCEEEEEeC----CCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhH--HHHHHhcCcCCC
Confidence 46777777777664 56777765 79999997544 3332221 2433 56654443 245555677889
Q ss_pred cEEEe
Q 030914 131 PQIFI 135 (169)
Q Consensus 131 P~vfi 135 (169)
|.+.+
T Consensus 88 P~~~~ 92 (122)
T smart00594 88 PYVAI 92 (122)
T ss_pred CEEEE
Confidence 98854
No 220
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.37 E-value=0.25 Score=35.82 Aligned_cols=57 Identities=14% Similarity=0.130 Sum_probs=38.4
Q ss_pred ccHHHHHHHHhhcCCeEEEeecCC----CCCCCccHHHHHHHHhc------CCCCeEEEEcCCCHHH
Q 030914 61 LSLKEVVEQDVKENPVMLYMKGVP----EFPQCGFSSLAVRVLGA------YNVPISARNILEDPEL 117 (169)
Q Consensus 61 ~~~~~~i~~~~~~~~Vvly~k~~~----~~~~C~~c~~a~~~L~~------~~v~~~~~di~~~~~~ 117 (169)
++.++.++..-+...|.+|..|.. -.+|||.|.+|.-++.+ .++.+..++|..-+..
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~W 79 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYW 79 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcc
Confidence 466777887777666766654433 37999999998775532 2455777788764443
No 221
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=92.33 E-value=1.1 Score=30.71 Aligned_cols=59 Identities=17% Similarity=0.192 Sum_probs=33.4
Q ss_pred HHHHHHHHhcC--------CCCeEEEEcCCCHH---HHHHHHHhc-CCCCCcEEEeCCeEee-ccHHHHHHH
Q 030914 92 SSLAVRVLGAY--------NVPISARNILEDPE---LKSAVKAFS-HWPTFPQIFIKGEFIG-GSDIILNMH 150 (169)
Q Consensus 92 c~~a~~~L~~~--------~v~~~~~di~~~~~---~~~~l~~~~-g~~t~P~vfi~g~~iG-G~d~l~~~~ 150 (169)
++....+|+.. ...|+++||...++ .++...++- .---+|.|.|+|+.|| |+-.|+..+
T Consensus 18 SkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i~~eiV~EGnp~LK~I~ 89 (93)
T PF07315_consen 18 SKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVINDEIVAEGNPQLKDIY 89 (93)
T ss_dssp HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEETTEEEEESS--HHHHH
T ss_pred chhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEECCEEEecCCccHHHHH
Confidence 34555666432 34578999986443 233333333 3456799999999998 776666554
No 222
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=92.28 E-value=0.046 Score=35.14 Aligned_cols=28 Identities=29% Similarity=0.475 Sum_probs=24.8
Q ss_pred CCCcchHHHHHHHHhCCCCccc-ccCCCc
Q 030914 17 PSARSSRIVSGSLYHNGMKYST-DVPNDP 44 (169)
Q Consensus 17 p~cgfs~~~~~~l~~~g~~~~s-~vl~d~ 44 (169)
|.|+++.++..+|.++|++|.. ++..++
T Consensus 8 ~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~ 36 (75)
T cd03418 8 PNCPYCVRAKALLDKKGVDYEEIDVDGDP 36 (75)
T ss_pred CCChHHHHHHHHHHHCCCcEEEEECCCCH
Confidence 8899999999999999999988 887653
No 223
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=92.13 E-value=0.38 Score=32.48 Aligned_cols=51 Identities=10% Similarity=0.025 Sum_probs=34.2
Q ss_pred eEEEeecCCCCCCCccHHHHHHHHhcC------CCCeEEEEcCCCHHHHHHHHHhcCCC--CCcEEEe
Q 030914 76 VMLYMKGVPEFPQCGFSSLAVRVLGAY------NVPISARNILEDPELKSAVKAFSHWP--TFPQIFI 135 (169)
Q Consensus 76 Vvly~k~~~~~~~C~~c~~a~~~L~~~------~v~~~~~di~~~~~~~~~l~~~~g~~--t~P~vfi 135 (169)
+++|.. ++|+.|..++..|++. .+.|..+|++..+.+ .+..|-. .+|++.+
T Consensus 16 ~~~f~~-----~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~----~~~~~i~~~~~P~~~~ 74 (103)
T cd02982 16 LVLFYN-----KDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRH----LEYFGLKEEDLPVIAI 74 (103)
T ss_pred EEEEEc-----CChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHH----HHHcCCChhhCCEEEE
Confidence 444554 6899999999988553 256677777665543 3334555 8999865
No 224
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=92.11 E-value=0.98 Score=29.30 Aligned_cols=58 Identities=16% Similarity=0.068 Sum_probs=42.1
Q ss_pred cHHHHHHHHhcCCCCeEEEEcC--CCHHHHHHHHHhcCC-CCCcEEEeC-CeEeeccHHHHH
Q 030914 91 FSSLAVRVLGAYNVPISARNIL--EDPELKSAVKAFSHW-PTFPQIFIK-GEFIGGSDIILN 148 (169)
Q Consensus 91 ~c~~a~~~L~~~~v~~~~~di~--~~~~~~~~l~~~~g~-~t~P~vfi~-g~~iGG~d~l~~ 148 (169)
.|..++-+|...|++|+.+.++ .++...+++.+.... ..+|.+-.+ |..+-....+..
T Consensus 11 ~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~ 72 (76)
T PF02798_consen 11 RSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILR 72 (76)
T ss_dssp TTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHH
T ss_pred chHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHH
Confidence 7888999999999999887664 344444677777767 899999999 887766544443
No 225
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=92.03 E-value=0.053 Score=33.78 Aligned_cols=29 Identities=14% Similarity=0.265 Sum_probs=24.7
Q ss_pred CCCcchHHHHHHHHhCCCCccc-ccCCCcc
Q 030914 17 PSARSSRIVSGSLYHNGMKYST-DVPNDPD 45 (169)
Q Consensus 17 p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~ 45 (169)
|.|++++++..+|.+++++|.. |+..+++
T Consensus 8 ~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~ 37 (72)
T cd02066 8 STCPYCKRAKRLLESLGIEFEEIDILEDGE 37 (72)
T ss_pred CCCHHHHHHHHHHHHcCCcEEEEECCCCHH
Confidence 5599999999999999999887 8877644
No 226
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=91.69 E-value=1.1 Score=35.28 Aligned_cols=64 Identities=27% Similarity=0.263 Sum_probs=34.5
Q ss_pred eEEEeecCCCCCCCccHHHHHHHHhcCC----CCeEEEEcC-----------CCHH---HHHHHHHhcC--CCCCcEEEe
Q 030914 76 VMLYMKGVPEFPQCGFSSLAVRVLGAYN----VPISARNIL-----------EDPE---LKSAVKAFSH--WPTFPQIFI 135 (169)
Q Consensus 76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~----v~~~~~di~-----------~~~~---~~~~l~~~~g--~~t~P~vfi 135 (169)
|.||+. .+|.-|--|-++|.++. |=.-.+.|+ ..++ .+..+.+..| ....||++|
T Consensus 2 VELFTS-----QGCsSCPpAD~~L~~l~~~~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vV 76 (202)
T PF06764_consen 2 VELFTS-----QGCSSCPPADRLLSELAARPDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVV 76 (202)
T ss_dssp EEEEE------TT-TT-HHHHHHHHHHHHHTSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEE
T ss_pred eeEecC-----CCCCCCcHHHHHHHHhhcCCCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEE
Confidence 679998 78999999999886553 211222222 2232 3334444443 456799999
Q ss_pred CCe-EeeccH
Q 030914 136 KGE-FIGGSD 144 (169)
Q Consensus 136 ~g~-~iGG~d 144 (169)
||+ +.+|.+
T Consensus 77 nG~~~~~g~~ 86 (202)
T PF06764_consen 77 NGREHRVGSD 86 (202)
T ss_dssp TTTEEEETT-
T ss_pred CCeeeeeccC
Confidence 995 667776
No 227
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=91.69 E-value=0.61 Score=41.47 Aligned_cols=68 Identities=19% Similarity=0.297 Sum_probs=44.2
Q ss_pred HHHHHHHhhcCCeEEEeecCCCCCCCccHH-------HHHHHHhcC--CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEE-
Q 030914 64 KEVVEQDVKENPVMLYMKGVPEFPQCGFSS-------LAVRVLGAY--NVPISARNILEDPELKSAVKAFSHWPTFPQI- 133 (169)
Q Consensus 64 ~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~-------~a~~~L~~~--~v~~~~~di~~~~~~~~~l~~~~g~~t~P~v- 133 (169)
.+.+++.|..|..++..--. |||++|+ +|-+.|.+. .|..-.+|-..+ ..+....+-+.+|.+
T Consensus 32 ~dnf~~~i~~~~~vlVeFYA---PWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~----~~~~~~y~v~gyPTlk 104 (493)
T KOG0190|consen 32 KDNFKETINGHEFVLVEFYA---PWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE----SDLASKYEVRGYPTLK 104 (493)
T ss_pred cccHHHHhccCceEEEEEEc---hhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh----hhhHhhhcCCCCCeEE
Confidence 35567778888866443221 8999998 456677777 455666666554 234444467778876
Q ss_pred -EeCCe
Q 030914 134 -FIKGE 138 (169)
Q Consensus 134 -fi~g~ 138 (169)
|.||+
T Consensus 105 iFrnG~ 110 (493)
T KOG0190|consen 105 IFRNGR 110 (493)
T ss_pred EEecCC
Confidence 66776
No 228
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=91.62 E-value=0.067 Score=34.51 Aligned_cols=30 Identities=10% Similarity=0.396 Sum_probs=26.3
Q ss_pred CCCCcchHHHHHHHHhCCCCccc-ccCCCcc
Q 030914 16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPD 45 (169)
Q Consensus 16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~ 45 (169)
.|.|++++++.++|.++|++|.. |+..|++
T Consensus 6 ~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~ 36 (72)
T TIGR02194 6 KNNCVQCKMTKKALEEHGIAFEEINIDEQPE 36 (72)
T ss_pred CCCCHHHHHHHHHHHHCCCceEEEECCCCHH
Confidence 37899999999999999999988 8887754
No 229
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=91.51 E-value=0.13 Score=33.77 Aligned_cols=33 Identities=18% Similarity=0.286 Sum_probs=27.8
Q ss_pred hhhhccCCCCCCCCcchHHHHHHHHhCCCCccc-ccCCC
Q 030914 6 SNLIFKGIASYPSARSSRIVSGSLYHNGMKYST-DVPND 43 (169)
Q Consensus 6 ~~~~~kg~~~~p~cgfs~~~~~~l~~~g~~~~s-~vl~d 43 (169)
++||.| |.|+++.++.+.|.+.|++|.. ++..+
T Consensus 10 V~ly~~-----~~Cp~C~~ak~~L~~~gi~y~~idi~~~ 43 (79)
T TIGR02190 10 VVVFTK-----PGCPFCAKAKATLKEKGYDFEEIPLGND 43 (79)
T ss_pred EEEEEC-----CCCHhHHHHHHHHHHcCCCcEEEECCCC
Confidence 456665 8999999999999999999988 77654
No 230
>PTZ00057 glutathione s-transferase; Provisional
Probab=91.48 E-value=1.5 Score=33.83 Aligned_cols=69 Identities=13% Similarity=0.205 Sum_probs=47.3
Q ss_pred CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHH-H--HHHHH--HhcCCCCCcEEEeCCeEeeccHHHHH
Q 030914 75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPE-L--KSAVK--AFSHWPTFPQIFIKGEFIGGSDIILN 148 (169)
Q Consensus 75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~-~--~~~l~--~~~g~~t~P~vfi~g~~iGG~d~l~~ 148 (169)
.+.||.- +..+.|..++-+|+..|++|+.+.+....+ . .+.++ ..+....+|.+.+||..+....-+..
T Consensus 4 ~~~L~y~-----~~~~~~~~vrl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~~ 77 (205)
T PTZ00057 4 EIVLYYF-----DARGKAELIRLIFAYLGIEYTDKRFGENGDAFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIVR 77 (205)
T ss_pred ceEEEec-----CCCcchHHHHHHHHHcCCCeEEEeccccchHHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHHH
Confidence 3667765 346778899999999999999988753222 1 11112 24667899999999977766554444
No 231
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=91.42 E-value=1.3 Score=33.42 Aligned_cols=39 Identities=18% Similarity=0.281 Sum_probs=25.2
Q ss_pred hhcCCeEEEeecCCCCCCCccHHHHHHHHh---cCCCCeEEEEcCC
Q 030914 71 VKENPVMLYMKGVPEFPQCGFSSLAVRVLG---AYNVPISARNILE 113 (169)
Q Consensus 71 ~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~---~~~v~~~~~di~~ 113 (169)
.+...|++|..+ .|||.|++....|+ +.++.+..++++.
T Consensus 61 ~~gk~vll~F~a----~wC~~C~~~~p~l~~l~~~~~~vi~V~~~~ 102 (173)
T TIGR00385 61 IQGKPVLLNVWA----SWCPPCRAEHPYLNELAKDGLPIVGVDYKD 102 (173)
T ss_pred cCCCEEEEEEEC----CcCHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 345566666554 69999998766554 3366666666643
No 232
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.95 E-value=0.49 Score=40.72 Aligned_cols=77 Identities=19% Similarity=0.239 Sum_probs=51.6
Q ss_pred CcccHHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCCC---CeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe
Q 030914 59 SGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNV---PISARNILEDPELKSAVKAFSHWPTFPQIFI 135 (169)
Q Consensus 59 ~~~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v---~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi 135 (169)
..+++-++|+.+-......-|.. -.|..|-.+++.|+-+.| .....-|+ ..-.+++...+ +--.+|.||.
T Consensus 103 ~~q~vieqik~i~g~~~FETy~S-----ltC~nCPDVVQALN~msvlNp~I~H~~Id-Ga~Fq~Evear-~IMaVPtvfl 175 (520)
T COG3634 103 EDQDVIEQIKAIDGDFHFETYFS-----LTCHNCPDVVQALNLMSVLNPRIKHTAID-GALFQDEVEAR-NIMAVPTVFL 175 (520)
T ss_pred hhHHHHHHHHhcCCceeEEEEEE-----eeccCChHHHHHHHHHHhcCCCceeEEec-chhhHhHHHhc-cceecceEEE
Confidence 44566777777777777887776 358778777777765543 34444443 34455555543 4678999999
Q ss_pred CCeEeec
Q 030914 136 KGEFIGG 142 (169)
Q Consensus 136 ~g~~iGG 142 (169)
||+-.|.
T Consensus 176 nGe~fg~ 182 (520)
T COG3634 176 NGEEFGQ 182 (520)
T ss_pred cchhhcc
Confidence 9998773
No 233
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=90.56 E-value=1.6 Score=29.86 Aligned_cols=25 Identities=20% Similarity=0.542 Sum_probs=17.0
Q ss_pred cCCeEEEeecCCCCCCCccHHHHHHHHhc
Q 030914 73 ENPVMLYMKGVPEFPQCGFSSLAVRVLGA 101 (169)
Q Consensus 73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~~ 101 (169)
..+++|+.-+ +|||.|++....|++
T Consensus 21 gk~vvl~F~~----~wC~~C~~~~p~l~~ 45 (114)
T cd02967 21 GRPTLLFFLS----PTCPVCKKLLPVIRS 45 (114)
T ss_pred CCeEEEEEEC----CCCcchHhHhHHHHH
Confidence 4456655554 699999987766644
No 234
>PTZ00102 disulphide isomerase; Provisional
Probab=90.24 E-value=0.45 Score=41.31 Aligned_cols=54 Identities=20% Similarity=0.353 Sum_probs=34.3
Q ss_pred CCeEEEeecCCCCCCCccHHHHHHHHhcC--------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe
Q 030914 74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAY--------NVPISARNILEDPELKSAVKAFSHWPTFPQIFI 135 (169)
Q Consensus 74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~--------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi 135 (169)
.+|+|+... +||++|+.....|++. .+.+..+|.+.++.. ....+.+.+|.+++
T Consensus 376 k~vlv~f~a----~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~----~~~~~v~~~Pt~~~ 437 (477)
T PTZ00102 376 KDVLLEIYA----PWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETP----LEEFSWSAFPTILF 437 (477)
T ss_pred CCEEEEEEC----CCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccc----hhcCCCcccCeEEE
Confidence 446666554 7999999888777543 144566777665543 22335677888744
No 235
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=90.00 E-value=2.9 Score=27.51 Aligned_cols=60 Identities=12% Similarity=0.025 Sum_probs=38.6
Q ss_pred CccHHHHHHHHhcCCCCeEEEEcCCCH-------HHHHHHH-HhcCCCCCcEEEeCCeEeeccHHHHH
Q 030914 89 CGFSSLAVRVLGAYNVPISARNILEDP-------ELKSAVK-AFSHWPTFPQIFIKGEFIGGSDIILN 148 (169)
Q Consensus 89 C~~c~~a~~~L~~~~v~~~~~di~~~~-------~~~~~l~-~~~g~~t~P~vfi~g~~iGG~d~l~~ 148 (169)
-+.|.++.-+|...|++|+.+.++... +.+.... ...-..++|.+..||..+.-..-+..
T Consensus 9 ~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~ 76 (82)
T cd03075 9 RGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILR 76 (82)
T ss_pred ccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHH
Confidence 356888889999999999987775321 1111111 11145699999988876665544443
No 236
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=89.93 E-value=1.2 Score=32.93 Aligned_cols=64 Identities=23% Similarity=0.255 Sum_probs=35.6
Q ss_pred cCCeEEEeecCCCCCCCccHHHHHHHH-------hcCCCCeEEEEcCCCHH-HH-----------------HHHHHhcCC
Q 030914 73 ENPVMLYMKGVPEFPQCGFSSLAVRVL-------GAYNVPISARNILEDPE-LK-----------------SAVKAFSHW 127 (169)
Q Consensus 73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L-------~~~~v~~~~~di~~~~~-~~-----------------~~l~~~~g~ 127 (169)
.+.++|+.-. ++|+.|+.....| ...++.+..++.+.+.+ ++ ..+.+..|.
T Consensus 61 ~k~~~l~f~a----~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v 136 (173)
T PRK03147 61 GKGVFLNFWG----TWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGV 136 (173)
T ss_pred CCEEEEEEEC----CcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCC
Confidence 3445555443 6999999755444 22346666666654432 22 233344566
Q ss_pred CCCcEEE-e--CCeEe
Q 030914 128 PTFPQIF-I--KGEFI 140 (169)
Q Consensus 128 ~t~P~vf-i--~g~~i 140 (169)
..+|.+| | +|+.+
T Consensus 137 ~~~P~~~lid~~g~i~ 152 (173)
T PRK03147 137 GPLPTTFLIDKDGKVV 152 (173)
T ss_pred CCcCeEEEECCCCcEE
Confidence 7788765 4 46644
No 237
>PRK10542 glutathionine S-transferase; Provisional
Probab=89.45 E-value=1.3 Score=33.68 Aligned_cols=57 Identities=12% Similarity=0.103 Sum_probs=40.6
Q ss_pred HHHHHHHHhcCCCCeEEEEcCCC--H-HHHHHHHHhcCCCCCcEEEe-CCeEeeccHHHHH
Q 030914 92 SSLAVRVLGAYNVPISARNILED--P-ELKSAVKAFSHWPTFPQIFI-KGEFIGGSDIILN 148 (169)
Q Consensus 92 c~~a~~~L~~~~v~~~~~di~~~--~-~~~~~l~~~~g~~t~P~vfi-~g~~iGG~d~l~~ 148 (169)
+.++.-+|.+.|++|+.+.|+.. + ...+++.+++....+|.+-+ ||..|-....+.+
T Consensus 11 ~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~ 71 (201)
T PRK10542 11 SLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGVAIMQ 71 (201)
T ss_pred HHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEeecHHHHHH
Confidence 66777789999999998776532 1 12256778888889999987 5666665544444
No 238
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=89.41 E-value=1.1 Score=31.00 Aligned_cols=59 Identities=20% Similarity=0.331 Sum_probs=35.5
Q ss_pred hcCCeEEEeecCCCCCCCccHHHHHHHH-------hcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe
Q 030914 72 KENPVMLYMKGVPEFPQCGFSSLAVRVL-------GAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFI 135 (169)
Q Consensus 72 ~~~~Vvly~k~~~~~~~C~~c~~a~~~L-------~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi 135 (169)
...+++|+.-.+ .+||+|.....-| ++.++.+..+..+...++++.+++.. ..+|.+.-
T Consensus 24 ~gk~~vl~f~~~---~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~--~~~~~~~D 89 (124)
T PF00578_consen 24 KGKPVVLFFWPT---AWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYG--LPFPVLSD 89 (124)
T ss_dssp TTSEEEEEEEST---TTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHT--CSSEEEEE
T ss_pred CCCcEEEEEeCc---cCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhc--cccccccC
Confidence 445666655442 4899997555433 44567777777765555666555543 56666554
No 239
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=89.38 E-value=0.39 Score=38.88 Aligned_cols=32 Identities=13% Similarity=0.238 Sum_probs=21.1
Q ss_pred CeEEEeecCCCCCCCccHHHHHHHHh----cCCCCeEEEEc
Q 030914 75 PVMLYMKGVPEFPQCGFSSLAVRVLG----AYNVPISARNI 111 (169)
Q Consensus 75 ~Vvly~k~~~~~~~C~~c~~a~~~L~----~~~v~~~~~di 111 (169)
.|++|+- |.||||++.-+-+. .-+|.+..+.+
T Consensus 120 ~I~vFtD-----p~CpyC~kl~~~l~~~~~~g~V~v~~ip~ 155 (251)
T PRK11657 120 IVYVFAD-----PNCPYCKQFWQQARPWVDSGKVQLRHILV 155 (251)
T ss_pred EEEEEEC-----CCChhHHHHHHHHHHHhhcCceEEEEEec
Confidence 3667777 89999999866543 32366555543
No 240
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=89.14 E-value=2.3 Score=29.86 Aligned_cols=36 Identities=28% Similarity=0.274 Sum_probs=21.7
Q ss_pred cCCeEEEeecCCCCCCCccHHHHHHHHhcC----CCCeEEEEcC
Q 030914 73 ENPVMLYMKGVPEFPQCGFSSLAVRVLGAY----NVPISARNIL 112 (169)
Q Consensus 73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~----~v~~~~~di~ 112 (169)
...++|+.-+ .|||.|.+....|++. ++.+..++++
T Consensus 25 gk~vvv~F~a----~~C~~C~~~~~~l~~l~~~~~~~vv~v~~~ 64 (127)
T cd03010 25 GKPYLLNVWA----SWCAPCREEHPVLMALARQGRVPIYGINYK 64 (127)
T ss_pred CCEEEEEEEc----CcCHHHHHHHHHHHHHHHhcCcEEEEEECC
Confidence 3444544444 5999999877766443 3555555543
No 241
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=88.81 E-value=2.6 Score=30.31 Aligned_cols=50 Identities=18% Similarity=0.242 Sum_probs=32.5
Q ss_pred hhcCCeEEEeecCCCCCCCccHHHHHHHH-------hcCCCCeEEEEcCCCHHHHHHHHH
Q 030914 71 VKENPVMLYMKGVPEFPQCGFSSLAVRVL-------GAYNVPISARNILEDPELKSAVKA 123 (169)
Q Consensus 71 ~~~~~Vvly~k~~~~~~~C~~c~~a~~~L-------~~~~v~~~~~di~~~~~~~~~l~~ 123 (169)
.+..+++|+.-.+ .|||.|......| ...++.+..+....++.+++.+.+
T Consensus 26 ~~gk~~vv~f~~~---~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~ 82 (146)
T PF08534_consen 26 FKGKPVVVNFWAS---AWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKK 82 (146)
T ss_dssp GTTSEEEEEEEST---TTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHH
T ss_pred hCCCeEEEEEEcc---CCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHh
Confidence 4445555554431 3899999665333 445688888888888777776655
No 242
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=88.78 E-value=2 Score=34.03 Aligned_cols=69 Identities=10% Similarity=0.097 Sum_probs=53.6
Q ss_pred CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEE--EcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHH
Q 030914 75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISAR--NILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILN 148 (169)
Q Consensus 75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~--di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~ 148 (169)
+..+|+. +.-+.|+++.-.++..|++|+.+ |+...+....++.+.....++|.+--+|-.+-....+..
T Consensus 2 ~~~ly~~-----~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~d~~~~l~eS~AI~~ 72 (226)
T KOG0867|consen 2 KLKLYGH-----LGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPLGKVPALEDGGLTLWESHAILR 72 (226)
T ss_pred CceEeec-----CCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcCCCCCeEecCCeEEeeHHHHHH
Confidence 3567877 67888999999999999999887 444556666677788888899999998887776644333
No 243
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=88.62 E-value=1.8 Score=27.86 Aligned_cols=68 Identities=12% Similarity=0.164 Sum_probs=42.5
Q ss_pred CCCCcchHHHHHHHHhCCCCccc-ccCCCccccCCCCCcccccCCcccHHHHHHHHhhcCCe-EEEeecCCCCCCCccHH
Q 030914 16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKVDASGLSLKEVVEQDVKENPV-MLYMKGVPEFPQCGFSS 93 (169)
Q Consensus 16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~~~~~k~~s~~pt~~~~~~~~i~~~~~~~~V-vly~k~~~~~~~C~~c~ 93 (169)
.+.|+++..+.++|...+++|.. ++..+++ .......+.+......+ ++|..| ...+.+.
T Consensus 7 ~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~--------------~~~~~~~~~~~~g~~~~P~v~~~g----~~igg~~ 68 (82)
T cd03419 7 KSYCPYCKRAKSLLKELGVKPAVVELDQHED--------------GSEIQDYLQELTGQRTVPNVFIGG----KFIGGCD 68 (82)
T ss_pred cCCCHHHHHHHHHHHHcCCCcEEEEEeCCCC--------------hHHHHHHHHHHhCCCCCCeEEECC----EEEcCHH
Confidence 38899999999999999998866 6665532 11233444444332222 356665 2456667
Q ss_pred HHHHHHhc
Q 030914 94 LAVRVLGA 101 (169)
Q Consensus 94 ~a~~~L~~ 101 (169)
.++++.++
T Consensus 69 ~~~~~~~~ 76 (82)
T cd03419 69 DLMALHKS 76 (82)
T ss_pred HHHHHHHc
Confidence 77766654
No 244
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=88.49 E-value=2.6 Score=32.12 Aligned_cols=47 Identities=21% Similarity=0.263 Sum_probs=28.7
Q ss_pred hcCCeEEEeecCCCCCCCccHHHHHHHHh---cCCCCeEEEEcCCCHH-HHHHHH
Q 030914 72 KENPVMLYMKGVPEFPQCGFSSLAVRVLG---AYNVPISARNILEDPE-LKSAVK 122 (169)
Q Consensus 72 ~~~~Vvly~k~~~~~~~C~~c~~a~~~L~---~~~v~~~~~di~~~~~-~~~~l~ 122 (169)
+.+.++|+.-. .|||.|++....|. +.++.+..++++.+++ +++.++
T Consensus 67 ~gk~vvv~Fwa----twC~~C~~e~p~l~~l~~~~~~vi~v~~~~~~~~~~~~~~ 117 (185)
T PRK15412 67 QGKPVLLNVWA----TWCPTCRAEHQYLNQLSAQGIRVVGMNYKDDRQKAISWLK 117 (185)
T ss_pred CCCEEEEEEEC----CCCHHHHHHHHHHHHHHHcCCEEEEEECCCCHHHHHHHHH
Confidence 44556655444 59999998766553 4467777777665543 444433
No 245
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=88.24 E-value=1 Score=33.01 Aligned_cols=33 Identities=21% Similarity=0.302 Sum_probs=23.9
Q ss_pred cHHHHHHHHhhcC-CeEEEeecCCCCCCCccHHHHHHH
Q 030914 62 SLKEVVEQDVKEN-PVMLYMKGVPEFPQCGFSSLAVRV 98 (169)
Q Consensus 62 ~~~~~i~~~~~~~-~Vvly~k~~~~~~~C~~c~~a~~~ 98 (169)
+.++.++...+.+ +|+|+..+ .||++|++..+.
T Consensus 11 ~~eeal~~Ak~~~Kpvmv~f~s----dwC~~Ck~l~k~ 44 (130)
T cd02960 11 TYEEGLYKAKKSNKPLMVIHHL----EDCPHSQALKKA 44 (130)
T ss_pred hHHHHHHHHHHCCCeEEEEEeC----CcCHhHHHHHHH
Confidence 4677777777655 46666554 799999988774
No 246
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=88.20 E-value=0.43 Score=34.45 Aligned_cols=73 Identities=18% Similarity=0.251 Sum_probs=35.0
Q ss_pred HHHHHHHHhhc-CCeEEEeecCC---CCCCCccHHHHHHHH----hcC--CCCeEEEEcCCCHHHHH---HHHH--hcCC
Q 030914 63 LKEVVEQDVKE-NPVMLYMKGVP---EFPQCGFSSLAVRVL----GAY--NVPISARNILEDPELKS---AVKA--FSHW 127 (169)
Q Consensus 63 ~~~~i~~~~~~-~~Vvly~k~~~---~~~~C~~c~~a~~~L----~~~--~v~~~~~di~~~~~~~~---~l~~--~~g~ 127 (169)
..+.+++.... .++.||..|+. ..+|||.|.+|.-++ ... +..+.++.|..-+..++ .++. ...-
T Consensus 8 ~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l 87 (119)
T PF06110_consen 8 FEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKL 87 (119)
T ss_dssp HHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC--
T ss_pred HHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeee
Confidence 44555554433 55655554443 479999999988544 443 34456667754333322 2333 2345
Q ss_pred CCCcEEEe
Q 030914 128 PTFPQIFI 135 (169)
Q Consensus 128 ~t~P~vfi 135 (169)
..+|+++-
T Consensus 88 ~~IPTLi~ 95 (119)
T PF06110_consen 88 KGIPTLIR 95 (119)
T ss_dssp -SSSEEEE
T ss_pred eecceEEE
Confidence 68999864
No 247
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=88.03 E-value=3.6 Score=29.32 Aligned_cols=54 Identities=24% Similarity=0.338 Sum_probs=30.5
Q ss_pred CeEEEeecCCCCCCCccHHHHHHHHh-------cCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEE
Q 030914 75 PVMLYMKGVPEFPQCGFSSLAVRVLG-------AYNVPISARNILEDPELKSAVKAFSHWPTFPQIF 134 (169)
Q Consensus 75 ~Vvly~k~~~~~~~C~~c~~a~~~L~-------~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vf 134 (169)
.|++|..+ .+||.|.+-..-|. ..|+.+.-+..+.....+ .+.+.. ..++|.+.
T Consensus 26 ~vl~f~~~----~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~-~~~~~~-~~~~p~~~ 86 (149)
T cd02970 26 VVVVFYRG----FGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLE-AFDKGK-FLPFPVYA 86 (149)
T ss_pred EEEEEECC----CCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHH-HHHHhc-CCCCeEEE
Confidence 45555544 49999997555443 346666666665444443 233333 34677544
No 248
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=87.92 E-value=1.4 Score=29.24 Aligned_cols=46 Identities=20% Similarity=0.287 Sum_probs=26.8
Q ss_pred CCeEEEeecCCCCCCCccHHHHHHHHh----cC---CCCeEEEEcCCC--HHHHHHHHH
Q 030914 74 NPVMLYMKGVPEFPQCGFSSLAVRVLG----AY---NVPISARNILED--PELKSAVKA 123 (169)
Q Consensus 74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~----~~---~v~~~~~di~~~--~~~~~~l~~ 123 (169)
+.++++.-+ .+|+.|.+....|. ++ ++.+..++++.+ +.+++.+.+
T Consensus 20 k~~ll~f~~----~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~ 74 (116)
T cd02966 20 KVVLVNFWA----SWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKK 74 (116)
T ss_pred CEEEEEeec----ccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHH
Confidence 345554443 59999997665553 32 466777777764 344444433
No 249
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=87.91 E-value=0.52 Score=30.10 Aligned_cols=28 Identities=21% Similarity=0.355 Sum_probs=24.8
Q ss_pred CCCcchHHHHHHHHhCCCCccc-ccCCCc
Q 030914 17 PSARSSRIVSGSLYHNGMKYST-DVPNDP 44 (169)
Q Consensus 17 p~cgfs~~~~~~l~~~g~~~~s-~vl~d~ 44 (169)
|.|+++.++.+.|.+.|++|.. ++..++
T Consensus 9 ~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~ 37 (72)
T cd03029 9 PGCPFCARAKAALQENGISYEEIPLGKDI 37 (72)
T ss_pred CCCHHHHHHHHHHHHcCCCcEEEECCCCh
Confidence 8899999999999999999987 877654
No 250
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=87.85 E-value=0.4 Score=40.20 Aligned_cols=75 Identities=12% Similarity=0.224 Sum_probs=44.5
Q ss_pred cCCcccHHHHHHHHhhcCC-eEEEeecCCCCCCCccHHHHHHHHhcCCCCeE---------EEEcCCCHHHHHHHHHhcC
Q 030914 57 DASGLSLKEVVEQDVKENP-VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPIS---------ARNILEDPELKSAVKAFSH 126 (169)
Q Consensus 57 pt~~~~~~~~i~~~~~~~~-Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~---------~~di~~~~~~~~~l~~~~g 126 (169)
||..+++.++.++.-+..- .|=|.. |||.+|++.--+.++.|.... ..|...-+.+ ....|
T Consensus 27 pt~VeDLddkFkdnkdddiW~VdFYA-----PWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~ai----Anefg 97 (468)
T KOG4277|consen 27 PTAVEDLDDKFKDNKDDDIWFVDFYA-----PWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAI----ANEFG 97 (468)
T ss_pred chhhhhhhHHhhhcccCCeEEEEeec-----hhhhhcccccchhHHhCcchhhcCCceeecccccccchhh----Hhhhc
Confidence 5555666666665544332 333444 899999998888777764332 2333334444 33446
Q ss_pred CCCCcEE-EeCCeEe
Q 030914 127 WPTFPQI-FIKGEFI 140 (169)
Q Consensus 127 ~~t~P~v-fi~g~~i 140 (169)
-..+|.| |..|.++
T Consensus 98 iqGYPTIk~~kgd~a 112 (468)
T KOG4277|consen 98 IQGYPTIKFFKGDHA 112 (468)
T ss_pred cCCCceEEEecCCee
Confidence 6778877 5666544
No 251
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=87.75 E-value=1.7 Score=34.33 Aligned_cols=60 Identities=15% Similarity=0.168 Sum_probs=48.8
Q ss_pred CCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHH
Q 030914 88 QCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILN 148 (169)
Q Consensus 88 ~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~ 148 (169)
..+.+.-++.+|.-.|++|+.+.+..+.. ...+|......++|.+-|||..|...-.+..
T Consensus 11 ~RG~ae~iR~lf~~a~v~fEd~r~~~~~~-w~~~K~~~pfgqlP~l~vDg~~i~QS~AI~R 70 (206)
T KOG1695|consen 11 IRGLAEPIRLLFAYAGVSFEDKRITMEDA-WEELKDKMPFGQLPVLEVDGKKLVQSRAILR 70 (206)
T ss_pred cchhHHHHHHHHHhcCCCcceeeeccccc-hhhhcccCCCCCCCEEeECCEeeccHHHHHH
Confidence 57889999999999999999999987654 5567766778899999999998876554444
No 252
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=87.73 E-value=3.3 Score=27.39 Aligned_cols=37 Identities=22% Similarity=0.164 Sum_probs=20.6
Q ss_pred CCCccHHHHHHHHhc--------CCCCeEEEEcCCC-HHHHHHHHH
Q 030914 87 PQCGFSSLAVRVLGA--------YNVPISARNILED-PELKSAVKA 123 (169)
Q Consensus 87 ~~C~~c~~a~~~L~~--------~~v~~~~~di~~~-~~~~~~l~~ 123 (169)
++|+.|.+....|.+ .++.+..+.++.+ ++.++.+++
T Consensus 11 ~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~ 56 (95)
T PF13905_consen 11 SWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKK 56 (95)
T ss_dssp TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHh
Confidence 589999987776633 2344555666654 233444433
No 253
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=87.63 E-value=1.1 Score=35.60 Aligned_cols=68 Identities=18% Similarity=0.229 Sum_probs=46.9
Q ss_pred CCeEEEeecCCCCCCCccHHHHHHHHhcCCCC--eEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeec----cHHHH
Q 030914 74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVP--ISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGG----SDIIL 147 (169)
Q Consensus 74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~--~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG----~d~l~ 147 (169)
-.|-||+. ..|.-|...-+.|++.|+- ++.+|-...+. .++++ +--++|-||+||+.+-+ .+++.
T Consensus 11 ~~VkI~~H-----ktC~ssy~Lf~~L~nkgll~~Vkii~a~~p~f--~~~~~--~V~SvP~Vf~DGel~~~dpVdp~~ie 81 (265)
T COG5494 11 MEVKIFTH-----KTCVSSYMLFEYLENKGLLGKVKIIDAELPPF--LAFEK--GVISVPSVFIDGELVYADPVDPEEIE 81 (265)
T ss_pred eEEEEEEe-----cchHHHHHHHHHHHhcCCCCCceEEEcCCChH--HHhhc--ceeecceEEEcCeEEEcCCCCHHHHH
Confidence 45778987 4699999999999998864 44455443332 23332 45689999999998754 45555
Q ss_pred HHH
Q 030914 148 NMH 150 (169)
Q Consensus 148 ~~~ 150 (169)
.+.
T Consensus 82 s~~ 84 (265)
T COG5494 82 SIL 84 (265)
T ss_pred HHH
Confidence 554
No 254
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=87.54 E-value=8.3 Score=28.30 Aligned_cols=80 Identities=16% Similarity=0.285 Sum_probs=48.4
Q ss_pred CeEEEeecCCC-CCCCccHHHHHH-HHhcCC---CCeEEEEcCCCHHHHHHHHHhcCCCCCcEE--EeCCeEeeccHHHH
Q 030914 75 PVMLYMKGVPE-FPQCGFSSLAVR-VLGAYN---VPISARNILEDPELKSAVKAFSHWPTFPQI--FIKGEFIGGSDIIL 147 (169)
Q Consensus 75 ~Vvly~k~~~~-~~~C~~c~~a~~-~L~~~~---v~~~~~di~~~~~~~~~l~~~~g~~t~P~v--fi~g~~iGG~d~l~ 147 (169)
..++|..|.|. .|-+..-.-+.. +.++++ +.+-.+|++.++++ ....|-.++|.+ |-||+.+|-..-.
T Consensus 36 ~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~L----A~~fgV~siPTLl~FkdGk~v~~i~G~- 110 (132)
T PRK11509 36 DGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAI----GDRFGVFRFPATLVFTGGNYRGVLNGI- 110 (132)
T ss_pred cEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHH----HHHcCCccCCEEEEEECCEEEEEEeCc-
Confidence 57788888773 344444444443 233433 66888899888765 444577888887 6699988755322
Q ss_pred HHHhcccHHHHHhc
Q 030914 148 NMHQSGELKEKLKG 161 (169)
Q Consensus 148 ~~~~~g~L~~~L~~ 161 (169)
....+|.++++.
T Consensus 111 --~~k~~l~~~I~~ 122 (132)
T PRK11509 111 --HPWAELINLMRG 122 (132)
T ss_pred --CCHHHHHHHHHH
Confidence 122445555543
No 255
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=87.44 E-value=0.46 Score=33.29 Aligned_cols=101 Identities=17% Similarity=0.188 Sum_probs=52.7
Q ss_pred CCCCcchHHHHHHHHhCCCCccc-ccCCCccccCCCCCcccccCCcccHHHHHHHHhhcCCeEEEeecCCCCCCCccHHH
Q 030914 16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKVDASGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSL 94 (169)
Q Consensus 16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~~~~~k~~s~~pt~~~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~ 94 (169)
.|.|..++++.++|.++|+.|.. |+..++-+ .+.+.+.++..-..-.-+|=.++
T Consensus 3 ~~~C~t~rka~~~L~~~gi~~~~~d~~k~p~s-------------~~el~~~l~~~~~~~~~lin~~~------------ 57 (110)
T PF03960_consen 3 NPNCSTCRKALKWLEENGIEYEFIDYKKEPLS-------------REELRELLSKLGNGPDDLINTRS------------ 57 (110)
T ss_dssp -TT-HHHHHHHHHHHHTT--EEEEETTTS----------------HHHHHHHHHHHTSSGGGGB-TTS------------
T ss_pred CCCCHHHHHHHHHHHHcCCCeEeehhhhCCCC-------------HHHHHHHHHHhcccHHHHhcCcc------------
Confidence 48999999999999999999988 88876532 23333333333211111111121
Q ss_pred HHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHH
Q 030914 95 AVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDI 145 (169)
Q Consensus 95 a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~ 145 (169)
...++++ .... +-..++++.+.|.+...--.-|.|.-+++.+-|+++
T Consensus 58 --~~~k~l~-~~~~-~~~s~~e~i~~l~~~p~LikRPIi~~~~~~~iG~~~ 104 (110)
T PF03960_consen 58 --KTYKELG-KLKK-DDLSDEELIELLLENPKLIKRPIIVDGKKAVIGFNE 104 (110)
T ss_dssp --HHHHHTT-HHHC-TTSBHHHHHHHHHHSGGGB-SSEEEETTEEEESSSG
T ss_pred --chHhhhh-hhhh-hhhhhHHHHHHHHhChhheeCCEEEECCEEEEeCCH
Confidence 1222333 0100 111345555666554444456999999999888763
No 256
>PRK10329 glutaredoxin-like protein; Provisional
Probab=87.13 E-value=0.54 Score=31.29 Aligned_cols=30 Identities=10% Similarity=0.255 Sum_probs=26.2
Q ss_pred CCCCcchHHHHHHHHhCCCCccc-ccCCCcc
Q 030914 16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPD 45 (169)
Q Consensus 16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~ 45 (169)
.|.|+++.++-+.|.+.|++|.. |+..|++
T Consensus 8 ~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~ 38 (81)
T PRK10329 8 RNDCVQCHATKRAMESRGFDFEMINVDRVPE 38 (81)
T ss_pred CCCCHhHHHHHHHHHHCCCceEEEECCCCHH
Confidence 48899999999999999999988 8887654
No 257
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=86.79 E-value=5.5 Score=28.53 Aligned_cols=70 Identities=11% Similarity=0.121 Sum_probs=43.3
Q ss_pred HHHHHhhcCCe--EEEeecCCCCCCCc---cHHHHHHHHhcC--CCCeEEEEcCCCHH-HHHHHHHhcCCC--CCcEE--
Q 030914 66 VVEQDVKENPV--MLYMKGVPEFPQCG---FSSLAVRVLGAY--NVPISARNILEDPE-LKSAVKAFSHWP--TFPQI-- 133 (169)
Q Consensus 66 ~i~~~~~~~~V--vly~k~~~~~~~C~---~c~~a~~~L~~~--~v~~~~~di~~~~~-~~~~l~~~~g~~--t~P~v-- 133 (169)
-+++.++.++. |.|.... |||+ +|.+.-.-+... .|.+-.+|++...+ ....|.+..|-. .+|.|
T Consensus 10 nF~~~v~~~~~vlV~F~A~~---Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~~gyPTl~l 86 (116)
T cd03007 10 TFYKVIPKFKYSLVKFDTAY---PYGEKHEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDKESYPVIYL 86 (116)
T ss_pred hHHHHHhcCCcEEEEEeCCC---CCCCChHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCcCCCCEEEE
Confidence 44556676664 3444433 8999 888887655432 37778888853221 224566666766 89987
Q ss_pred EeCCe
Q 030914 134 FIKGE 138 (169)
Q Consensus 134 fi~g~ 138 (169)
|.+|.
T Consensus 87 F~~g~ 91 (116)
T cd03007 87 FHGGD 91 (116)
T ss_pred EeCCC
Confidence 66773
No 258
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=86.78 E-value=3.6 Score=31.13 Aligned_cols=41 Identities=17% Similarity=0.157 Sum_probs=26.9
Q ss_pred HhhcCCeEEEeecCCCCCCCccHHH-------HHHHHhcCCCCeEEEEcCCC
Q 030914 70 DVKENPVMLYMKGVPEFPQCGFSSL-------AVRVLGAYNVPISARNILED 114 (169)
Q Consensus 70 ~~~~~~Vvly~k~~~~~~~C~~c~~-------a~~~L~~~~v~~~~~di~~~ 114 (169)
.....-|.+|... .|||.|+. .-+.+++.+-+++.+-|+.|
T Consensus 30 ~l~gKvV~lyFsA----~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D 77 (157)
T KOG2501|consen 30 ALQGKVVGLYFSA----HWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSD 77 (157)
T ss_pred hhCCcEEEEEEEE----EECCchhhCCchHHHHHHHHHhcCCceEEEEEecC
Confidence 3444556677654 69999994 33344555667888888764
No 259
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=86.72 E-value=0.59 Score=32.62 Aligned_cols=24 Identities=17% Similarity=0.457 Sum_probs=15.7
Q ss_pred CCeEEEeecCCCCCCCccHHHHHHHHhc
Q 030914 74 NPVMLYMKGVPEFPQCGFSSLAVRVLGA 101 (169)
Q Consensus 74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~ 101 (169)
+.++|+.-+ ++|+.|......|..
T Consensus 21 k~~vl~F~~----~~C~~C~~~~~~l~~ 44 (123)
T cd03011 21 KPVLVYFWA----TWCPVCRFTSPTVNQ 44 (123)
T ss_pred CEEEEEEEC----CcChhhhhhChHHHH
Confidence 445544443 699999988766643
No 260
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=86.69 E-value=2.9 Score=31.86 Aligned_cols=74 Identities=8% Similarity=0.031 Sum_probs=40.5
Q ss_pred HHHHHHHHhhcCC--eEEEeecCCCCCCCccHHHHHHHHhcC-C--------CCeEEEEcCCC---------H---HHHH
Q 030914 63 LKEVVEQDVKENP--VMLYMKGVPEFPQCGFSSLAVRVLGAY-N--------VPISARNILED---------P---ELKS 119 (169)
Q Consensus 63 ~~~~i~~~~~~~~--Vvly~k~~~~~~~C~~c~~a~~~L~~~-~--------v~~~~~di~~~---------~---~~~~ 119 (169)
+.+-.+.+...++ ++||.. +.|++|.+.++-+... . ...-++++... . .-.+
T Consensus 31 ~~~d~ksi~~~~Kylllmfes-----~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ 105 (182)
T COG2143 31 VFDDNKSISPNDKYLLLMFES-----NGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTE 105 (182)
T ss_pred hHHHHHhcCccCcEEEEEEcC-----CCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHH
Confidence 3444445554445 556666 7899999988754322 1 12233444321 1 1133
Q ss_pred HHHHhcCCCCCcEEE-eCC--eEee
Q 030914 120 AVKAFSHWPTFPQIF-IKG--EFIG 141 (169)
Q Consensus 120 ~l~~~~g~~t~P~vf-i~g--~~iG 141 (169)
+|.+..+.+++|.++ .|+ +.|+
T Consensus 106 ELa~kf~vrstPtfvFfdk~Gk~Il 130 (182)
T COG2143 106 ELAQKFAVRSTPTFVFFDKTGKTIL 130 (182)
T ss_pred HHHHHhccccCceEEEEcCCCCEEE
Confidence 566667778888874 444 4444
No 261
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=86.54 E-value=1 Score=30.87 Aligned_cols=52 Identities=15% Similarity=0.275 Sum_probs=34.5
Q ss_pred hhhhccCCCC---CCCCcchHHHHHHHHhCCCCccc-cc--CCCccccCCCCCccccc
Q 030914 6 SNLIFKGIAS---YPSARSSRIVSGSLYHNGMKYST-DV--PNDPDTHEDFRPTSKVD 57 (169)
Q Consensus 6 ~~~~~kg~~~---~p~cgfs~~~~~~l~~~g~~~~s-~v--l~d~~~~~~~k~~s~~p 57 (169)
.-||+|..+. ..-|.||+++.-.|.+.|++|.. ++ .+.++....+-|+...|
T Consensus 6 ~el~vka~~~~~~~g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~~~~~~nP~g~vP 63 (91)
T cd03061 6 IELFVKASSDGESIGNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPEDLKDLAPGTQPP 63 (91)
T ss_pred EEEEEEeccCCCCCCCChhHHHHHHHHHHCCCceEEEEeCCCCCCHHHHHhCCCCCCC
Confidence 3477776655 45599999999999999999876 33 34444444444444444
No 262
>PHA03050 glutaredoxin; Provisional
Probab=85.78 E-value=0.29 Score=34.54 Aligned_cols=26 Identities=15% Similarity=0.130 Sum_probs=21.4
Q ss_pred CCCcchHHHHHHHHhCCC---Cccc-ccCC
Q 030914 17 PSARSSRIVSGSLYHNGM---KYST-DVPN 42 (169)
Q Consensus 17 p~cgfs~~~~~~l~~~g~---~~~s-~vl~ 42 (169)
|.|+|+.++.+.|+++++ +|.. ++..
T Consensus 21 ~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~ 50 (108)
T PHA03050 21 FTCPFCRNALDILNKFSFKRGAYEIVDIKE 50 (108)
T ss_pred CCChHHHHHHHHHHHcCCCcCCcEEEECCC
Confidence 669999999999999998 5655 6654
No 263
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=85.16 E-value=2.2 Score=27.82 Aligned_cols=50 Identities=22% Similarity=0.408 Sum_probs=31.1
Q ss_pred CCCccHHHHHHHHhcC------CCCeEEEEcC-CCHHHHHHHHHhcCCCCCcEEE--eCCe
Q 030914 87 PQCGFSSLAVRVLGAY------NVPISARNIL-EDPELKSAVKAFSHWPTFPQIF--IKGE 138 (169)
Q Consensus 87 ~~C~~c~~a~~~L~~~------~v~~~~~di~-~~~~~~~~l~~~~g~~t~P~vf--i~g~ 138 (169)
++||+|..+...|.+. .+.+..+|+. .++.....+.. ....+|.+. .+|.
T Consensus 42 ~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~p~~~~~~~~~ 100 (127)
T COG0526 42 PWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGV--AVRSIPTLLLFKDGK 100 (127)
T ss_pred CcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhh--hhccCCeEEEEeCcc
Confidence 6999999987766433 3667778886 56666555543 123335544 4554
No 264
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=84.45 E-value=1.7 Score=37.14 Aligned_cols=53 Identities=17% Similarity=0.253 Sum_probs=33.4
Q ss_pred cCCeEEEeecCCCCCCCccHHHHHHHHhcC---------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe
Q 030914 73 ENPVMLYMKGVPEFPQCGFSSLAVRVLGAY---------NVPISARNILEDPELKSAVKAFSHWPTFPQIFI 135 (169)
Q Consensus 73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~---------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi 135 (169)
...|+|+... +||++|+.....+.+. ++.+-.+|++.++-. . .+-..+|.+++
T Consensus 364 ~~~vlv~f~a----~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~~~-----~-~~i~~~Pt~~~ 425 (462)
T TIGR01130 364 TKDVLVEFYA----PWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATANDVP-----P-FEVEGFPTIKF 425 (462)
T ss_pred CCeEEEEEEC----CCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCccC-----C-CCccccCEEEE
Confidence 3445555443 7999999877666431 455677787755321 1 34578898865
No 265
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=84.04 E-value=3.2 Score=31.64 Aligned_cols=61 Identities=21% Similarity=0.329 Sum_probs=28.2
Q ss_pred ccccCCcccHHHHHHHHhhcCC-eEEEeecCCCCCCCccHHHHHH----------HHhcCCCCeEEEEcCCCHHHHHHHH
Q 030914 54 SKVDASGLSLKEVVEQDVKENP-VMLYMKGVPEFPQCGFSSLAVR----------VLGAYNVPISARNILEDPELKSAVK 122 (169)
Q Consensus 54 s~~pt~~~~~~~~i~~~~~~~~-Vvly~k~~~~~~~C~~c~~a~~----------~L~~~~v~~~~~di~~~~~~~~~l~ 122 (169)
-+|..-. ++.++..-++++ |+|... + .+|.+|..+.+ +|++.=|+ ..+|-++.|++...+.
T Consensus 20 V~W~~w~---~ea~~~Ak~e~KpIfl~ig-~---~~C~wChvM~~esf~d~eVa~~lN~~FI~-VkvDree~Pdid~~y~ 91 (163)
T PF03190_consen 20 VNWQPWG---EEALEKAKKENKPIFLSIG-Y---SWCHWCHVMERESFSDPEVAEYLNRNFIP-VKVDREERPDIDKIYM 91 (163)
T ss_dssp S--B-SS---HHHHHHHHHHT--EEEEEE-----TT-HHHHHHHHHTTT-HHHHHHHHHH-EE-EEEETTT-HHHHHHHH
T ss_pred CCcccCC---HHHHHHHHhcCCcEEEEEE-e---cCCcchhhhcccCcCCHHHHHHHhCCEEE-EEeccccCccHHHHHH
Confidence 3454433 344555555555 444443 3 68999996553 34333232 2356666677655443
No 266
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.03 E-value=5.9 Score=27.48 Aligned_cols=74 Identities=16% Similarity=0.215 Sum_probs=43.5
Q ss_pred cCCeEEEeecCCCCCCCccH------HHHHHHHhcC--------CCCeEEEEcCCCH--HHHHHHHH--hcCCCCCcEEE
Q 030914 73 ENPVMLYMKGVPEFPQCGFS------SLAVRVLGAY--------NVPISARNILEDP--ELKSAVKA--FSHWPTFPQIF 134 (169)
Q Consensus 73 ~~~Vvly~k~~~~~~~C~~c------~~a~~~L~~~--------~v~~~~~di~~~~--~~~~~l~~--~~g~~t~P~vf 134 (169)
...+++|+..+ -|.-| +....+|+.. ...|+++||...+ +.-.++.+ ...---+|.|.
T Consensus 4 ~~~l~VyGae~----iCASCV~aPtsKdt~eWLeaalkRKyp~~~F~~~YiDI~n~~~e~~~~~~aekI~~dey~YPliv 79 (106)
T COG4837 4 EAKLVVYGAEV----ICASCVNAPTSKDTYEWLEAALKRKYPNQPFKYTYIDITNPPLEDHDLQFAEKIEQDEYFYPLIV 79 (106)
T ss_pred eeEEEEecchh----hhHHhcCCCcchhHHHHHHHHHhccCCCCCcEEEEEEcCCCccHHHHHHHHHHHhcccccceEEE
Confidence 34567777653 45555 4555666432 2347889996432 22222222 23456789999
Q ss_pred eCCeEee-ccHHHHHHH
Q 030914 135 IKGEFIG-GSDIILNMH 150 (169)
Q Consensus 135 i~g~~iG-G~d~l~~~~ 150 (169)
++|+.|+ |.-.++..+
T Consensus 80 vedeiVaeGnprlKdiy 96 (106)
T COG4837 80 VEDEIVAEGNPRLKDIY 96 (106)
T ss_pred EcceEeecCCchHHHHH
Confidence 9999997 665555543
No 267
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=83.60 E-value=1.3 Score=31.70 Aligned_cols=57 Identities=14% Similarity=0.181 Sum_probs=36.2
Q ss_pred HHHHHHHhcCCCCeEEEE-cCCCHHHHHHHH------HhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914 93 SLAVRVLGAYNVPISARN-ILEDPELKSAVK------AFSHWPTFPQIFIKGEFIGGSDIILNM 149 (169)
Q Consensus 93 ~~a~~~L~~~~v~~~~~d-i~~~~~~~~~l~------~~~g~~t~P~vfi~g~~iGG~d~l~~~ 149 (169)
..+..++.+.|++...++ ...++..++.++ ...|-..+|.++|||+.+-|.+....+
T Consensus 86 ~~l~~~a~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~gtPt~~v~g~~~~G~~~~~~l 149 (154)
T cd03023 86 ESLLRIAKKAGLDEAKLKKDMDDPEIEATIDKNRQLARALGITGTPAFIIGDTVIPGAVPADTL 149 (154)
T ss_pred HHHHHHHHHcCCCHHHHHHHhhChHHHHHHHHHHHHHHHcCCCcCCeEEECCEEecCCCCHHHH
Confidence 356677788888754321 112333333332 234778899999999999998765544
No 268
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=83.55 E-value=7.1 Score=28.39 Aligned_cols=57 Identities=11% Similarity=0.056 Sum_probs=32.0
Q ss_pred hcCCeEEEeecCCCCCCCccHHH-------HHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEE
Q 030914 72 KENPVMLYMKGVPEFPQCGFSSL-------AVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQI 133 (169)
Q Consensus 72 ~~~~Vvly~k~~~~~~~C~~c~~-------a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~v 133 (169)
+.+.++|+.-.+ -+||.|.. ..+-+...|+.+..+.++....+++.+++. + .++|.+
T Consensus 29 ~gk~~ll~f~~~---~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~-~-~~~~~l 92 (154)
T PRK09437 29 QGQRVLVYFYPK---AMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKE-L-LNFTLL 92 (154)
T ss_pred CCCCEEEEEECC---CCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHh-C-CCCeEE
Confidence 445666665432 36888864 333445567777777766555555555444 2 345544
No 269
>PHA03075 glutaredoxin-like protein; Provisional
Probab=83.32 E-value=1.3 Score=31.81 Aligned_cols=34 Identities=24% Similarity=0.375 Sum_probs=26.6
Q ss_pred CCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEE--EEcC
Q 030914 74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISA--RNIL 112 (169)
Q Consensus 74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~--~di~ 112 (169)
..+++|+| |.|+-|+-+-++|.+..=+|+. +||.
T Consensus 3 ~tLILfGK-----P~C~vCe~~s~~l~~ledeY~ilrVNIl 38 (123)
T PHA03075 3 KTLILFGK-----PLCSVCESISEALKELEDEYDILRVNIL 38 (123)
T ss_pred ceEEEeCC-----cccHHHHHHHHHHHHhhccccEEEEEee
Confidence 45789999 8999999999999877656654 4443
No 270
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=81.54 E-value=2.4 Score=31.89 Aligned_cols=57 Identities=21% Similarity=0.287 Sum_probs=37.9
Q ss_pred HHHHHHhcCCCCeEEE-EcCCCHHHHHHHHH------hcCCCCCcEEEeCCeEeeccHHHHHHH
Q 030914 94 LAVRVLGAYNVPISAR-NILEDPELKSAVKA------FSHWPTFPQIFIKGEFIGGSDIILNMH 150 (169)
Q Consensus 94 ~a~~~L~~~~v~~~~~-di~~~~~~~~~l~~------~~g~~t~P~vfi~g~~iGG~d~l~~~~ 150 (169)
...+++.+.|++.+.+ ....++++++.+.+ ..|-..+|.++|||+.+-|.|.+..+.
T Consensus 125 ~l~~~a~~~Gld~~~~~~~~~~~~~~~~l~~~~~~a~~~gi~gvPtfvv~g~~~~G~~~l~~~~ 188 (192)
T cd03022 125 VLAAVAAAAGLDADELLAAADDPAVKAALRANTEEAIARGVFGVPTFVVDGEMFWGQDRLDMLE 188 (192)
T ss_pred HHHHHHHHcCCCHHHHHHHcCCHHHHHHHHHHHHHHHHcCCCcCCeEEECCeeecccccHHHHH
Confidence 4566788888865322 12234445444433 247889999999999999988776543
No 271
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=81.35 E-value=11 Score=26.67 Aligned_cols=55 Identities=13% Similarity=0.081 Sum_probs=29.8
Q ss_pred cCCeEEEeecCCCCCCCccHHHHHH-------HHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcE
Q 030914 73 ENPVMLYMKGVPEFPQCGFSSLAVR-------VLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQ 132 (169)
Q Consensus 73 ~~~Vvly~k~~~~~~~C~~c~~a~~-------~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~ 132 (169)
.+.++|+.-.+ .+||.|..... -+.+.++.+..+.++....+++.+++. + ..+|.
T Consensus 23 gk~~ll~f~~~---~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~-~-~~~~~ 84 (140)
T cd03017 23 GKPVVLYFYPK---DDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKY-G-LPFPL 84 (140)
T ss_pred CCcEEEEEeCC---CCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHh-C-CCceE
Confidence 44555554311 47999975333 334456766666666555555555443 2 34553
No 272
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=80.92 E-value=1.2 Score=31.85 Aligned_cols=32 Identities=13% Similarity=0.316 Sum_probs=21.1
Q ss_pred CeEEEeecCCCCCCCccHHHHHHHHhc----CC-CCeEEEEc
Q 030914 75 PVMLYMKGVPEFPQCGFSSLAVRVLGA----YN-VPISARNI 111 (169)
Q Consensus 75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~----~~-v~~~~~di 111 (169)
.|++|+. +.||||++.-..+.. .| +.+..+++
T Consensus 8 ~i~~f~D-----~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~ 44 (154)
T cd03023 8 TIVEFFD-----YNCGYCKKLAPELEKLLKEDPDVRVVFKEF 44 (154)
T ss_pred EEEEEEC-----CCChhHHHhhHHHHHHHHHCCCceEEEEeC
Confidence 4667776 899999988776544 22 45555555
No 273
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=80.90 E-value=8.6 Score=25.01 Aligned_cols=53 Identities=15% Similarity=0.141 Sum_probs=42.1
Q ss_pred CccHHHHHHHHhcCCCC---eEEEEcCCCHHHHHHHHHhcCCCCCcEEEe-CCeEeeccHHHHHH
Q 030914 89 CGFSSLAVRVLGAYNVP---ISARNILEDPELKSAVKAFSHWPTFPQIFI-KGEFIGGSDIILNM 149 (169)
Q Consensus 89 C~~c~~a~~~L~~~~v~---~~~~di~~~~~~~~~l~~~~g~~t~P~vfi-~g~~iGG~d~l~~~ 149 (169)
-+.|-.+..+|+-.+.+ |+.+... ++. ++....+|.+.. +|+.|.|+.++.+.
T Consensus 14 d~ecLa~~~yl~~~~~~~~~~~vv~s~-n~~-------~Sptg~LP~L~~~~~~~vsg~~~Iv~y 70 (72)
T PF10568_consen 14 DPECLAVIAYLKFAGAPEQQFKVVPSN-NPW-------LSPTGELPALIDSGGTWVSGFRNIVEY 70 (72)
T ss_pred CHHHHHHHHHHHhCCCCCceEEEEEcC-CCC-------cCCCCCCCEEEECCCcEEECHHHHHHh
Confidence 57899999999999999 6666553 222 345568999999 99999999988765
No 274
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=80.84 E-value=5.7 Score=27.50 Aligned_cols=64 Identities=20% Similarity=0.332 Sum_probs=40.0
Q ss_pred CCccHHHHHHHHhcCCC--CeEEEEcCCCHHHHHHHHH--hc--CCCCCcEEEeCCe-EeeccHHHHHHHhc
Q 030914 88 QCGFSSLAVRVLGAYNV--PISARNILEDPELKSAVKA--FS--HWPTFPQIFIKGE-FIGGSDIILNMHQS 152 (169)
Q Consensus 88 ~C~~c~~a~~~L~~~~v--~~~~~di~~~~~~~~~l~~--~~--g~~t~P~vfi~g~-~iGG~d~l~~~~~~ 152 (169)
.||+|....+.+....- .++.+++...+.. +.+.. .+ ...+.-.+.-+|+ ...|.|-+..+...
T Consensus 6 ~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~g~~~~~G~~A~~~l~~~ 76 (114)
T PF04134_consen 6 DCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQ-ALLASYGISPEDADSRLHLIDDGERVYRGSDAVLRLLRR 76 (114)
T ss_pred CCHhHHHHHHHHHhcCCCCCEEEEECCChhhh-hHHHhcCcCHHHHcCeeEEecCCCEEEEcHHHHHHHHHH
Confidence 69999999999998864 5778888433321 11111 11 1233444433776 88888887776554
No 275
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=80.01 E-value=0.58 Score=30.98 Aligned_cols=29 Identities=10% Similarity=0.131 Sum_probs=23.8
Q ss_pred CCCCcchHHHHHHHHh-----CCCCccc-ccCCCc
Q 030914 16 YPSARSSRIVSGSLYH-----NGMKYST-DVPNDP 44 (169)
Q Consensus 16 ~p~cgfs~~~~~~l~~-----~g~~~~s-~vl~d~ 44 (169)
.|.|+++.++.+.|.+ .+++|.. |+..++
T Consensus 8 ~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~ 42 (85)
T PRK11200 8 RPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEG 42 (85)
T ss_pred CCCChhHHHHHHHHHhhcccccCCcEEEEECCCCh
Confidence 3679999999999999 7888877 887764
No 276
>PRK09979 putative rho operon leader peptide; Provisional
Probab=79.67 E-value=0.79 Score=24.58 Aligned_cols=17 Identities=35% Similarity=0.354 Sum_probs=14.1
Q ss_pred ccCCCCCCCCcchHHHH
Q 030914 10 FKGIASYPSARSSRIVS 26 (169)
Q Consensus 10 ~kg~~~~p~cgfs~~~~ 26 (169)
+-|+...|.|+||.+-.
T Consensus 6 isgsslnpscrfssays 22 (33)
T PRK09979 6 ISGSSLNPSCRFSSAYS 22 (33)
T ss_pred ccCCcCCcccccccccC
Confidence 56899999999998654
No 277
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=78.97 E-value=6.7 Score=28.12 Aligned_cols=45 Identities=13% Similarity=0.079 Sum_probs=24.4
Q ss_pred CCCccHHHHHHHH-------hcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEE
Q 030914 87 PQCGFSSLAVRVL-------GAYNVPISARNILEDPELKSAVKAFSHWPTFPQI 133 (169)
Q Consensus 87 ~~C~~c~~a~~~L-------~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~v 133 (169)
.+||.|.+...-| .+.++.+.-+..+....+++.+++. + ..+|.+
T Consensus 39 ~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~-~-~~~~~~ 90 (149)
T cd03018 39 AFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEEN-G-LTFPLL 90 (149)
T ss_pred CCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhc-C-CCceEe
Confidence 4899998655433 3345666556655434455444443 2 345543
No 278
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=77.52 E-value=1.1 Score=27.69 Aligned_cols=30 Identities=20% Similarity=0.339 Sum_probs=24.3
Q ss_pred CCCCcchHHHHHHHHhCCCCccc-ccCCCcc
Q 030914 16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPD 45 (169)
Q Consensus 16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~ 45 (169)
.+.|+++.++...|.+.+++|.. |+..+++
T Consensus 7 ~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~ 37 (74)
T TIGR02196 7 TPWCPPCKKAKEYLTSKGIAFEEIDVEKDSA 37 (74)
T ss_pred CCCChhHHHHHHHHHHCCCeEEEEeccCCHH
Confidence 47899999999999999998877 7766543
No 279
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=77.47 E-value=4.2 Score=29.48 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=17.3
Q ss_pred hcCCCCCcEEEeCCeEeeccHHH
Q 030914 124 FSHWPTFPQIFIKGEFIGGSDII 146 (169)
Q Consensus 124 ~~g~~t~P~vfi~g~~iGG~d~l 146 (169)
..|-..+|.+||||+++.|.-.+
T Consensus 131 ~~~i~~tPt~~inG~~~~~~~~~ 153 (162)
T PF13462_consen 131 QLGITGTPTFFINGKYVVGPYTI 153 (162)
T ss_dssp HHT-SSSSEEEETTCEEETTTSH
T ss_pred HcCCccccEEEECCEEeCCCCCH
Confidence 34778999999999999864433
No 280
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=77.28 E-value=7.5 Score=30.35 Aligned_cols=64 Identities=20% Similarity=0.254 Sum_probs=42.1
Q ss_pred CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEE--EcCCC-HHHHHHHHHhcCCCCCcEEEeCCeEeecc
Q 030914 75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISAR--NILED-PELKSAVKAFSHWPTFPQIFIKGEFIGGS 143 (169)
Q Consensus 75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~--di~~~-~~~~~~l~~~~g~~t~P~vfi~g~~iGG~ 143 (169)
+-++|+.= +..| +.|++-.|.-.||+|+++ |+..+ .+.-.++++.....++|.+.|||.-+-..
T Consensus 5 KpiLYSYW---rSSC--swRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g~tl~eS 71 (217)
T KOG0868|consen 5 KPILYSYW---RSSC--SWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDGLTLTES 71 (217)
T ss_pred cchhhhhh---cccc--hHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEECCEEeehH
Confidence 44566541 0246 446666777777777665 55554 33344788888888999999999877653
No 281
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=75.47 E-value=2 Score=35.34 Aligned_cols=72 Identities=11% Similarity=0.102 Sum_probs=55.5
Q ss_pred eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCC--CHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHHHhc
Q 030914 76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILE--DPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQS 152 (169)
Q Consensus 76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~--~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~~~~ 152 (169)
.++|-- |+.-.+.+++-.+.+.||+|+.+||+- ++.....+..+.....+|.+.-+...|-.++.+.+..++
T Consensus 27 ~vLyhh-----pysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~gevPVl~~g~~II~d~tqIIdYvEr 100 (325)
T KOG4420|consen 27 LVLYHH-----PYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPGGEVPVLIHGDNIISDYTQIIDYVER 100 (325)
T ss_pred ceeeec-----CcccccceeeeehhhcccccceeeccCccccccCchheecCCCCCCceEecCCeecccHHHHHHHHHH
Confidence 778887 677788999999999999999999863 344444566666677899766555666788888887665
No 282
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=75.10 E-value=24 Score=26.16 Aligned_cols=37 Identities=14% Similarity=0.160 Sum_probs=21.5
Q ss_pred hcCCeEEEeecCCCCCCCccHHHHHHHH----hc---CCCCeEEEEcC
Q 030914 72 KENPVMLYMKGVPEFPQCGFSSLAVRVL----GA---YNVPISARNIL 112 (169)
Q Consensus 72 ~~~~Vvly~k~~~~~~~C~~c~~a~~~L----~~---~~v~~~~~di~ 112 (169)
+...++||.-+ .+||.|.+...-| ++ .++.+..+.++
T Consensus 24 ~~k~~ll~f~~----t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d 67 (171)
T cd02969 24 DGKALVVMFIC----NHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSN 67 (171)
T ss_pred CCCEEEEEEEC----CCCccHHHHHHHHHHHHHHHhhCCeEEEEEecC
Confidence 45566666655 5999998543333 22 34555555554
No 283
>PTZ00056 glutathione peroxidase; Provisional
Probab=75.09 E-value=13 Score=28.89 Aligned_cols=35 Identities=17% Similarity=0.310 Sum_probs=19.3
Q ss_pred cCCeEEEeecCCCCCCCccHHHHHHHH-------hcCCCCeEEEEc
Q 030914 73 ENPVMLYMKGVPEFPQCGFSSLAVRVL-------GAYNVPISARNI 111 (169)
Q Consensus 73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L-------~~~~v~~~~~di 111 (169)
.+.|+|+.-. .|||.|.+-...| ...|+.+.-+++
T Consensus 39 Gkvvlv~fwA----swC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~ 80 (199)
T PTZ00056 39 NKVLMITNSA----SKCGLTKKHVDQMNRLHSVFNPLGLEILAFPT 80 (199)
T ss_pred CCEEEEEEEC----CCCCChHHHHHHHHHHHHHHhcCceEEEEecc
Confidence 3455555444 4899998633333 233565555554
No 284
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=74.66 E-value=2.8 Score=31.04 Aligned_cols=23 Identities=13% Similarity=0.173 Sum_probs=17.1
Q ss_pred cCCeEEEeecCCCCCCCccHHHHHHHHh
Q 030914 73 ENPVMLYMKGVPEFPQCGFSSLAVRVLG 100 (169)
Q Consensus 73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~ 100 (169)
...|+.|.. +.||+|+++-..+.
T Consensus 16 ~~~i~~f~D-----~~Cp~C~~~~~~~~ 38 (178)
T cd03019 16 KPEVIEFFS-----YGCPHCYNFEPILE 38 (178)
T ss_pred CcEEEEEEC-----CCCcchhhhhHHHH
Confidence 345777877 78999998776553
No 285
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=74.28 E-value=9.1 Score=34.39 Aligned_cols=65 Identities=23% Similarity=0.343 Sum_probs=41.6
Q ss_pred cHHHHHHHHhhc--CCe--EEEeecCCCCCCCccHHHHHHHHhcC-----CCCeEEEEcCCCHHHHHHHHHhcCCCCCcE
Q 030914 62 SLKEVVEQDVKE--NPV--MLYMKGVPEFPQCGFSSLAVRVLGAY-----NVPISARNILEDPELKSAVKAFSHWPTFPQ 132 (169)
Q Consensus 62 ~~~~~i~~~~~~--~~V--vly~k~~~~~~~C~~c~~a~~~L~~~-----~v~~~~~di~~~~~~~~~l~~~~g~~t~P~ 132 (169)
+.++.+++.... ++| ++|.. +.|..|.+++++|++. .|.++.+|...+.+..+. .|-.-.|.
T Consensus 352 ~~~~~l~~~~~~l~~~v~l~~~~~-----~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~~~~~----~~v~~~P~ 422 (555)
T TIGR03143 352 SLRQQLVGIFGRLENPVTLLLFLD-----GSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPESETL----PKITKLPT 422 (555)
T ss_pred HHHHHHHHHHHhcCCCEEEEEEEC-----CCchhhHHHHHHHHHHHhcCCcEEEEEeccccchhhHhh----cCCCcCCE
Confidence 344445554432 454 45665 5689999999999774 466777887666554443 34456788
Q ss_pred EEe
Q 030914 133 IFI 135 (169)
Q Consensus 133 vfi 135 (169)
+-|
T Consensus 423 ~~i 425 (555)
T TIGR03143 423 VAL 425 (555)
T ss_pred EEE
Confidence 876
No 286
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=74.17 E-value=10 Score=27.67 Aligned_cols=56 Identities=16% Similarity=0.171 Sum_probs=28.5
Q ss_pred cCCeEEEeecCCCCCCCccHHHHHHHHhc-------CCCCeEEEEcCC-------C-HHHHHHHHHhcCCCCCcEEE
Q 030914 73 ENPVMLYMKGVPEFPQCGFSSLAVRVLGA-------YNVPISARNILE-------D-PELKSAVKAFSHWPTFPQIF 134 (169)
Q Consensus 73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~~-------~~v~~~~~di~~-------~-~~~~~~l~~~~g~~t~P~vf 134 (169)
...|+|+.-. .||| |..-...|++ .|+.+.-+.++. + +.+++.+++..+ .++|.+.
T Consensus 22 Gk~vvl~fwa----twC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~-~~fp~~~ 92 (152)
T cd00340 22 GKVLLIVNVA----SKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYG-VTFPMFA 92 (152)
T ss_pred CCEEEEEEEc----CCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcC-CCceeee
Confidence 3456665544 4899 9875554433 344444444321 1 334555544223 4678653
No 287
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=73.28 E-value=6.4 Score=31.57 Aligned_cols=38 Identities=21% Similarity=0.299 Sum_probs=28.0
Q ss_pred CCCcEE--EeCCeEeeccHH----HHHHHhcccHHHHHhccccc
Q 030914 128 PTFPQI--FIKGEFIGGSDI----ILNMHQSGELKEKLKGIASN 165 (169)
Q Consensus 128 ~t~P~v--fi~g~~iGG~d~----l~~~~~~g~L~~~L~~~~~~ 165 (169)
..+|.+ |-||++||.+-. +-+-+..|+|.+.|++.+..
T Consensus 210 n~lP~LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e~gll 253 (273)
T KOG3171|consen 210 NVLPTLLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEYGLL 253 (273)
T ss_pred cCCceEEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHcCCC
Confidence 456655 669999999754 44456679999999887653
No 288
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=72.79 E-value=3.7 Score=25.83 Aligned_cols=28 Identities=18% Similarity=0.153 Sum_probs=23.1
Q ss_pred CCCCcchHHHHHHHHhCCCCccc-ccCCC
Q 030914 16 YPSARSSRIVSGSLYHNGMKYST-DVPND 43 (169)
Q Consensus 16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d 43 (169)
.+.|++++++...|.+++++|.. |+..+
T Consensus 7 ~~~C~~C~~~~~~L~~~~~~~~~idi~~~ 35 (77)
T TIGR02200 7 TTWCGYCAQLMRTLDKLGAAYEWVDIEED 35 (77)
T ss_pred CCCChhHHHHHHHHHHcCCceEEEeCcCC
Confidence 37899999999999999999876 66554
No 289
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=72.74 E-value=4 Score=26.98 Aligned_cols=28 Identities=25% Similarity=0.432 Sum_probs=24.2
Q ss_pred CCCcchHHHHHHHHhCCCCccc-ccCCCc
Q 030914 17 PSARSSRIVSGSLYHNGMKYST-DVPNDP 44 (169)
Q Consensus 17 p~cgfs~~~~~~l~~~g~~~~s-~vl~d~ 44 (169)
|-|.|+.++-+.|...|+.|.. ++..++
T Consensus 9 ~~CPyC~~ak~~L~~~g~~~~~i~~~~~~ 37 (80)
T COG0695 9 PGCPYCKRAKRLLDRKGVDYEEIDVDDDE 37 (80)
T ss_pred CCCchHHHHHHHHHHcCCCcEEEEecCCc
Confidence 5599999999999999999988 777653
No 290
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=72.18 E-value=3.8 Score=29.76 Aligned_cols=37 Identities=22% Similarity=0.218 Sum_probs=24.8
Q ss_pred CCeEEEeecCCCCCCCccHHHHHHHH----hcC----CCCeEEEEcCCCH
Q 030914 74 NPVMLYMKGVPEFPQCGFSSLAVRVL----GAY----NVPISARNILEDP 115 (169)
Q Consensus 74 ~~Vvly~k~~~~~~~C~~c~~a~~~L----~~~----~v~~~~~di~~~~ 115 (169)
..|++|.. +.||+|.+.-..+ +.+ .|.|..+++..+.
T Consensus 14 ~~v~~f~d-----~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~ 58 (162)
T PF13462_consen 14 ITVTEFFD-----FQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDK 58 (162)
T ss_dssp EEEEEEE------TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSH
T ss_pred eEEEEEEC-----CCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccc
Confidence 35778887 8999999875543 443 5678888875443
No 291
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=71.66 E-value=15 Score=25.83 Aligned_cols=58 Identities=10% Similarity=-0.003 Sum_probs=30.2
Q ss_pred hcCCeEEEee-cCCCCCCCccHHHHHHHHh-------cCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEE
Q 030914 72 KENPVMLYMK-GVPEFPQCGFSSLAVRVLG-------AYNVPISARNILEDPELKSAVKAFSHWPTFPQIF 134 (169)
Q Consensus 72 ~~~~Vvly~k-~~~~~~~C~~c~~a~~~L~-------~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vf 134 (169)
..++++||.- + .+|+.|.....-|. ..++.+..+.++....++..+.+. +..++|.+.
T Consensus 21 ~gk~~ll~f~~~----~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~-~~~~~~~l~ 86 (140)
T cd02971 21 KGKWVVLFFYPK----DFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKE-GGLNFPLLS 86 (140)
T ss_pred CCCeEEEEEeCC----CCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcc-cCCCceEEE
Confidence 3455555543 3 47999986544332 346666666665333334333332 234566543
No 292
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=71.57 E-value=2.7 Score=31.56 Aligned_cols=55 Identities=16% Similarity=0.230 Sum_probs=34.9
Q ss_pred HHHHHhcCCCCeEEEE-cCCCHHHHHHHHH------hcCCCCCcEEEeCCe-EeeccHHHHHH
Q 030914 95 AVRVLGAYNVPISARN-ILEDPELKSAVKA------FSHWPTFPQIFIKGE-FIGGSDIILNM 149 (169)
Q Consensus 95 a~~~L~~~~v~~~~~d-i~~~~~~~~~l~~------~~g~~t~P~vfi~g~-~iGG~d~l~~~ 149 (169)
+.+++.+.|++-..++ ...+++.++.+.+ ..|-..+|.++|||+ .+-|.+.+..+
T Consensus 126 l~~~~~~~Gld~~~~~~~~~~~~~~~~~~~~~~~a~~~gv~GvP~~vv~g~~~~~G~~~~~~l 188 (193)
T PF01323_consen 126 LAEIAEEAGLDPDEFDAALDSPEVKAALEEDTAEARQLGVFGVPTFVVNGKYRFFGADRLDEL 188 (193)
T ss_dssp HHHHHHHTT--HHHHHHHHTSHHHHHHHHHHHHHHHHTTCSSSSEEEETTTEEEESCSSHHHH
T ss_pred HHHHHHHcCCcHHHHHHHhcchHHHHHHHHHHHHHHHcCCcccCEEEECCEEEEECCCCHHHH
Confidence 6677888888653322 2245555555543 247889999999999 77787765544
No 293
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=71.45 E-value=11 Score=33.26 Aligned_cols=66 Identities=21% Similarity=0.427 Sum_probs=46.8
Q ss_pred CCCccHHHHHHHHhcC--CC-CeEEEEcCCCHHH-HHHHHH---hcCC--CCCcEEEe-------CCeEeeccHHHHHHH
Q 030914 87 PQCGFSSLAVRVLGAY--NV-PISARNILEDPEL-KSAVKA---FSHW--PTFPQIFI-------KGEFIGGSDIILNMH 150 (169)
Q Consensus 87 ~~C~~c~~a~~~L~~~--~v-~~~~~di~~~~~~-~~~l~~---~~g~--~t~P~vfi-------~g~~iGG~d~l~~~~ 150 (169)
..|||=.+|--+-+.+ ++ +|..+-|...|+. .+.|.. ..|| ..-|.|+= .|.++||+++++++.
T Consensus 2 ~~cp~ya~~ellad~l~~~l~~f~~~ki~~~p~~w~~wl~~~c~~~~w~~~~spiiwrel~~rggkg~l~gg~~~f~e~~ 81 (452)
T cd05295 2 ADCPYYAKAELLADYLQKNLPDFRVHKIVKHPDEWEDWLQDLCKKNGWSHKRSPIIWRELLDRGGKGLLLGGCNEFLEYA 81 (452)
T ss_pred CCCchhHHHHHHHHHHHhhCCCceEEEccCChHHHHHHHHHHHHhcCCccCCCCeeHHHHHhcCCCceEecChHHHHHHH
Confidence 3699988876655543 34 4888888887754 344444 3466 46799975 688999999999886
Q ss_pred hc
Q 030914 151 QS 152 (169)
Q Consensus 151 ~~ 152 (169)
+.
T Consensus 82 ~~ 83 (452)
T cd05295 82 ES 83 (452)
T ss_pred HH
Confidence 53
No 294
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=71.27 E-value=17 Score=27.55 Aligned_cols=72 Identities=19% Similarity=0.278 Sum_probs=46.3
Q ss_pred EEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCC--HH-HHHHHHHh----------------------cCCCCCc
Q 030914 77 MLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILED--PE-LKSAVKAF----------------------SHWPTFP 131 (169)
Q Consensus 77 vly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~--~~-~~~~l~~~----------------------~g~~t~P 131 (169)
.|.+-|+ ..=++++++...|+++||+|+..=+..+ ++ +.+.++++ .+..++|
T Consensus 2 ~IimGS~---SD~~~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lpgvva~~t~~P 78 (156)
T TIGR01162 2 GIIMGSD---SDLPTMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLPGMVAALTPLP 78 (156)
T ss_pred EEEECcH---hhHHHHHHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhHHHHHhccCCC
Confidence 3455444 3356899999999999999876655443 22 22333221 1356788
Q ss_pred EEE--eCCeEeeccHHHHHHHh
Q 030914 132 QIF--IKGEFIGGSDIILNMHQ 151 (169)
Q Consensus 132 ~vf--i~g~~iGG~d~l~~~~~ 151 (169)
.|= +.....+|.|.|..+.+
T Consensus 79 VIgvP~~~~~l~G~daLlS~vq 100 (156)
T TIGR01162 79 VIGVPVPSKALSGLDSLLSIVQ 100 (156)
T ss_pred EEEecCCccCCCCHHHHHHHhc
Confidence 873 34556788898888877
No 295
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=69.81 E-value=15 Score=30.12 Aligned_cols=94 Identities=15% Similarity=0.147 Sum_probs=52.3
Q ss_pred HHHHHHHhhcC---CeEEEeecCCCCCCCccHHHHHHHHhcC-----CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEE--
Q 030914 64 KEVVEQDVKEN---PVMLYMKGVPEFPQCGFSSLAVRVLGAY-----NVPISARNILEDPELKSAVKAFSHWPTFPQI-- 133 (169)
Q Consensus 64 ~~~i~~~~~~~---~Vvly~k~~~~~~~C~~c~~a~~~L~~~-----~v~~~~~di~~~~~~~~~l~~~~g~~t~P~v-- 133 (169)
+.+++.+-+.. .|||+... +.++-|..+-..|..+ .++|..+....-+ +........+|.|
T Consensus 134 e~~l~~ie~~~~~~~VVVHiY~----~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~-----~~~~f~~~~LPtllv 204 (265)
T PF02114_consen 134 EEFLDAIEKESKSTWVVVHIYE----PGFPRCEIMNSCLECLARKYPEVKFVKIRASKCP-----ASENFPDKNLPTLLV 204 (265)
T ss_dssp HHHHHHCCTSSTT-EEEEEEE-----TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCC-----TTTTS-TTC-SEEEE
T ss_pred hhHHHHHhccCCCcEEEEEEEe----CCCchHHHHHHHHHHHHHhCCceEEEEEehhccC-----cccCCcccCCCEEEE
Confidence 44555443333 26655543 6788898887777543 3667666654221 1112234678987
Q ss_pred EeCCeEeeccHHHHHH----HhcccHHHHHhcccccC
Q 030914 134 FIKGEFIGGSDIILNM----HQSGELKEKLKGIASNQ 166 (169)
Q Consensus 134 fi~g~~iGG~d~l~~~----~~~g~L~~~L~~~~~~~ 166 (169)
|.+|..+|.+-.+.++ ....+|+.+|..+|...
T Consensus 205 Yk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G~l~ 241 (265)
T PF02114_consen 205 YKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYGVLP 241 (265)
T ss_dssp EETTEEEEEECTGGGCT-TT--HHHHHHHHHTTTSSS
T ss_pred EECCEEEEeEEehHHhcCCCCCHHHHHHHHHHcCCCC
Confidence 5699877765333322 23346899998887643
No 296
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=69.47 E-value=17 Score=27.10 Aligned_cols=37 Identities=8% Similarity=-0.041 Sum_probs=21.5
Q ss_pred cCCeEEEee-cCCCCCCCccHHHHHHHH-------hcCCCCeEEEEcCC
Q 030914 73 ENPVMLYMK-GVPEFPQCGFSSLAVRVL-------GAYNVPISARNILE 113 (169)
Q Consensus 73 ~~~Vvly~k-~~~~~~~C~~c~~a~~~L-------~~~~v~~~~~di~~ 113 (169)
.+.++||.- + .+||.|......| .+.|+.+..+.++.
T Consensus 29 Gk~vvl~F~~~----~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~ 73 (173)
T cd03015 29 GKWVVLFFYPL----DFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDS 73 (173)
T ss_pred CCEEEEEEECC----CCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 345565553 3 4899999755544 33456655555543
No 297
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=69.25 E-value=2.5 Score=26.04 Aligned_cols=28 Identities=21% Similarity=0.366 Sum_probs=22.7
Q ss_pred CCCCcchHHHHHHHHhCCCCccc-ccCCC
Q 030914 16 YPSARSSRIVSGSLYHNGMKYST-DVPND 43 (169)
Q Consensus 16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d 43 (169)
.+-|+.+.++..+|.+.+++|.. ++..+
T Consensus 7 ~~~c~~c~~~~~~l~~~~i~~~~~~i~~~ 35 (73)
T cd02976 7 KPDCPYCKATKRFLDERGIPFEEVDVDED 35 (73)
T ss_pred CCCChhHHHHHHHHHHCCCCeEEEeCCCC
Confidence 46799999999999999998876 66443
No 298
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=68.92 E-value=38 Score=23.93 Aligned_cols=71 Identities=11% Similarity=0.176 Sum_probs=40.2
Q ss_pred cHHHHHHHHhhcCC-eEEEeecCCCCCCCccHH------HHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEE
Q 030914 62 SLKEVVEQDVKENP-VMLYMKGVPEFPQCGFSS------LAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIF 134 (169)
Q Consensus 62 ~~~~~i~~~~~~~~-Vvly~k~~~~~~~C~~c~------~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vf 134 (169)
+.++.++...++.+ ++||-.+.-...+|.||+ .++++|++. .=+-..|+...+.. ++....+..++|.+.
T Consensus 5 s~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~~-fv~w~~dv~~~eg~--~la~~l~~~~~P~~~ 81 (116)
T cd02991 5 TYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINTR-MLFWACSVAKPEGY--RVSQALRERTYPFLA 81 (116)
T ss_pred cHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHcC-EEEEEEecCChHHH--HHHHHhCCCCCCEEE
Confidence 45666666665554 667766522233688887 455666653 21223467554432 244445677999984
Q ss_pred e
Q 030914 135 I 135 (169)
Q Consensus 135 i 135 (169)
+
T Consensus 82 ~ 82 (116)
T cd02991 82 M 82 (116)
T ss_pred E
Confidence 4
No 299
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=67.76 E-value=2.6 Score=27.22 Aligned_cols=26 Identities=15% Similarity=0.208 Sum_probs=22.2
Q ss_pred CCCCcchHHHHHHHHhCCCCccc-ccC
Q 030914 16 YPSARSSRIVSGSLYHNGMKYST-DVP 41 (169)
Q Consensus 16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl 41 (169)
.|-|+|++++...|.+.|++|.. ++.
T Consensus 7 ~~~sp~~~kv~~~L~~~gi~y~~~~v~ 33 (77)
T cd03041 7 FEGSPFCRLVREVLTELELDVILYPCP 33 (77)
T ss_pred CCCCchHHHHHHHHHHcCCcEEEEECC
Confidence 46788999999999999999977 664
No 300
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=67.55 E-value=15 Score=33.18 Aligned_cols=26 Identities=12% Similarity=0.236 Sum_probs=18.4
Q ss_pred hcCCeEEEeecCCCCCCCccHHHHHHHHhc
Q 030914 72 KENPVMLYMKGVPEFPQCGFSSLAVRVLGA 101 (169)
Q Consensus 72 ~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~ 101 (169)
+..+|+|+.-+ .||+.|++....|.+
T Consensus 55 kGKpVvV~FWA----TWCppCk~emP~L~e 80 (521)
T PRK14018 55 KDKPTLIKFWA----SWCPLCLSELGETEK 80 (521)
T ss_pred CCCEEEEEEEc----CCCHHHHHHHHHHHH
Confidence 44556666665 599999998776643
No 301
>PLN02412 probable glutathione peroxidase
Probab=66.75 E-value=28 Score=26.01 Aligned_cols=19 Identities=11% Similarity=0.399 Sum_probs=11.5
Q ss_pred cCCeEEEeecCCCCCCCccHHHH
Q 030914 73 ENPVMLYMKGVPEFPQCGFSSLA 95 (169)
Q Consensus 73 ~~~Vvly~k~~~~~~~C~~c~~a 95 (169)
...|+|+.-. .|||.|.+-
T Consensus 29 gk~vlv~f~a----~~C~~c~~e 47 (167)
T PLN02412 29 GKVLLIVNVA----SKCGLTDSN 47 (167)
T ss_pred CCEEEEEEeC----CCCCChHHH
Confidence 3455554333 589999853
No 302
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=65.67 E-value=14 Score=31.56 Aligned_cols=55 Identities=16% Similarity=0.217 Sum_probs=34.5
Q ss_pred hcCCeEEEeecCCCCCCCccHHHHHHHHhcC----C--CCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe
Q 030914 72 KENPVMLYMKGVPEFPQCGFSSLAVRVLGAY----N--VPISARNILEDPELKSAVKAFSHWPTFPQIFI 135 (169)
Q Consensus 72 ~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~----~--v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi 135 (169)
+..-++.|.. |||++|.+....+.+. . +..-.+|...+.+ +.+..+...+|.+.+
T Consensus 47 ~~~~~v~fya-----pwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~----~~~~y~i~gfPtl~~ 107 (383)
T KOG0191|consen 47 DSPWLVEFYA-----PWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKD----LCEKYGIQGFPTLKV 107 (383)
T ss_pred CCceEEEEEC-----CCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHH----HHHhcCCccCcEEEE
Confidence 3455777777 8999999776655433 1 2344445544444 455567888898855
No 303
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=65.08 E-value=7.5 Score=24.84 Aligned_cols=28 Identities=11% Similarity=0.068 Sum_probs=22.3
Q ss_pred CCCCcchHHHHHHHHhCCCC--ccc-ccCCC
Q 030914 16 YPSARSSRIVSGSLYHNGMK--YST-DVPND 43 (169)
Q Consensus 16 ~p~cgfs~~~~~~l~~~g~~--~~s-~vl~d 43 (169)
.|.|+++.++.++|...+++ |.. ++..+
T Consensus 6 ~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~ 36 (84)
T TIGR02180 6 KSYCPYCKKAKEILAKLNVKPAYEVVELDQL 36 (84)
T ss_pred CCCChhHHHHHHHHHHcCCCCCCEEEEeeCC
Confidence 48899999999999999987 555 55554
No 304
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=64.48 E-value=33 Score=23.20 Aligned_cols=57 Identities=11% Similarity=0.123 Sum_probs=39.6
Q ss_pred HHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHH
Q 030914 64 KEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKA 123 (169)
Q Consensus 64 ~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~ 123 (169)
...|...+...++||+..+. -....+..+++.-++.++|+....-..-..+.+.|.+
T Consensus 39 ~~~l~~~i~~aD~VIv~t~~---vsH~~~~~vk~~akk~~ip~~~~~~~~~~~l~~~l~~ 95 (97)
T PF10087_consen 39 ASRLPSKIKKADLVIVFTDY---VSHNAMWKVKKAAKKYGIPIIYSRSRGVSSLERALER 95 (97)
T ss_pred hhHHHHhcCCCCEEEEEeCC---cChHHHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHh
Confidence 45688889888888877742 2233478899999999999877764444455555543
No 305
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=64.28 E-value=23 Score=25.22 Aligned_cols=43 Identities=2% Similarity=-0.163 Sum_probs=23.1
Q ss_pred hcCCeEEEeecCCCCCCCccHHHHHHHHh----c-CCCCeEEEEcCCCHHH
Q 030914 72 KENPVMLYMKGVPEFPQCGFSSLAVRVLG----A-YNVPISARNILEDPEL 117 (169)
Q Consensus 72 ~~~~Vvly~k~~~~~~~C~~c~~a~~~L~----~-~~v~~~~~di~~~~~~ 117 (169)
..++++|+.-.+ -.||.|.+-...|. + .++.+.-+.++.....
T Consensus 25 ~gk~vvl~f~~~---~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~~~~~ 72 (143)
T cd03014 25 AGKVKVISVFPS---IDTPVCATQTKRFNKEAAKLDNTVVLTISADLPFAQ 72 (143)
T ss_pred CCCeEEEEEEcC---CCCCcCHHHHHHHHHHHHhcCCCEEEEEECCCHHHH
Confidence 344566554432 24799997665543 2 2555656666543333
No 306
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=63.44 E-value=19 Score=26.22 Aligned_cols=21 Identities=19% Similarity=0.449 Sum_probs=12.5
Q ss_pred cCCeEEEeecCCCCCCCccHHHHHH
Q 030914 73 ENPVMLYMKGVPEFPQCGFSSLAVR 97 (169)
Q Consensus 73 ~~~Vvly~k~~~~~~~C~~c~~a~~ 97 (169)
.+.|+|+.-. .+||.|.+...
T Consensus 22 Gk~vvv~~~a----s~C~~c~~~~~ 42 (153)
T TIGR02540 22 GKVSLVVNVA----SECGFTDQNYR 42 (153)
T ss_pred CCEEEEEEeC----CCCCchhhhHH
Confidence 3444444333 58999986554
No 307
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=63.25 E-value=7.5 Score=25.78 Aligned_cols=21 Identities=14% Similarity=0.281 Sum_probs=18.9
Q ss_pred CccHHHHHHHHhcCCCCeEEE
Q 030914 89 CGFSSLAVRVLGAYNVPISAR 109 (169)
Q Consensus 89 C~~c~~a~~~L~~~~v~~~~~ 109 (169)
=+|++++.++|+++|++|+..
T Consensus 15 vGF~rk~L~I~E~~~is~Eh~ 35 (76)
T cd04911 15 VGFGRKLLSILEDNGISYEHM 35 (76)
T ss_pred hcHHHHHHHHHHHcCCCEeee
Confidence 589999999999999998764
No 308
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=63.10 E-value=8.4 Score=27.07 Aligned_cols=24 Identities=17% Similarity=0.061 Sum_probs=16.1
Q ss_pred hcCCeEEEeecCCCCCCCccHHHHHHHH
Q 030914 72 KENPVMLYMKGVPEFPQCGFSSLAVRVL 99 (169)
Q Consensus 72 ~~~~Vvly~k~~~~~~~C~~c~~a~~~L 99 (169)
+.+.++||.-+ .+||.|.+....|
T Consensus 22 ~gk~vvl~F~a----~~C~~C~~~~p~l 45 (126)
T cd03012 22 RGKVVLLDFWT----YCCINCLHTLPYL 45 (126)
T ss_pred CCCEEEEEEEC----CCCccHHHHHHHH
Confidence 44556666554 5999999776555
No 309
>PF14353 CpXC: CpXC protein
Probab=61.80 E-value=6 Score=28.35 Aligned_cols=45 Identities=24% Similarity=0.378 Sum_probs=32.7
Q ss_pred CCccHHHHHHHHhcCCCC-eEEEEcCCCHHHHHHHHHhc------------CCCCCcEEEeCCe
Q 030914 88 QCGFSSLAVRVLGAYNVP-ISARNILEDPELKSAVKAFS------------HWPTFPQIFIKGE 138 (169)
Q Consensus 88 ~C~~c~~a~~~L~~~~v~-~~~~di~~~~~~~~~l~~~~------------g~~t~P~vfi~g~ 138 (169)
.||.|.. ...++ |+.+|...++++++++..-+ ..-..|.+|.+..
T Consensus 3 tCP~C~~------~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~~~p~lY~D~~ 60 (128)
T PF14353_consen 3 TCPHCGH------EFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRLEYPLLYHDPE 60 (128)
T ss_pred CCCCCCC------eeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceecCCCEEEEcCC
Confidence 4888875 33333 67899999999999997432 2347899999864
No 310
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=61.52 E-value=10 Score=30.71 Aligned_cols=63 Identities=19% Similarity=0.169 Sum_probs=36.7
Q ss_pred eEEEeecCCCCCCCccHHHHHHHHhcCCCC-------e--EEEEcC------C---CHHHHHHHHHhcCC--CCCcEEEe
Q 030914 76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVP-------I--SARNIL------E---DPELKSAVKAFSHW--PTFPQIFI 135 (169)
Q Consensus 76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~-------~--~~~di~------~---~~~~~~~l~~~~g~--~t~P~vfi 135 (169)
|.||+. .+|.-|--+-+.|.++--+ | ++-|.. . +-+.+..+....|. ...||++|
T Consensus 45 VELfTS-----QGCsSCPPAd~~l~k~a~~~~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQavv 119 (261)
T COG5429 45 VELFTS-----QGCSSCPPADANLAKLADDPGVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQAVV 119 (261)
T ss_pred EEEeec-----CCcCCCChHHHHHHHhccCCCEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchhee
Confidence 669998 6899998888888766322 1 111221 1 22333344444443 35699999
Q ss_pred CCe-Eeecc
Q 030914 136 KGE-FIGGS 143 (169)
Q Consensus 136 ~g~-~iGG~ 143 (169)
||+ ++-|.
T Consensus 120 nGr~~~~Ga 128 (261)
T COG5429 120 NGRVHANGA 128 (261)
T ss_pred echhhhcCC
Confidence 996 44443
No 311
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=60.29 E-value=41 Score=23.62 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=14.2
Q ss_pred hcCCeEEEeecCCCCCCCcc-HHHHHHHH
Q 030914 72 KENPVMLYMKGVPEFPQCGF-SSLAVRVL 99 (169)
Q Consensus 72 ~~~~Vvly~k~~~~~~~C~~-c~~a~~~L 99 (169)
+.+.++|+.-+ .+|+. |.+....|
T Consensus 21 ~gk~~vl~f~~----~~C~~~C~~~l~~l 45 (142)
T cd02968 21 KGKPVLVYFGY----THCPDVCPTTLANL 45 (142)
T ss_pred CCCEEEEEEEc----CCCcccCHHHHHHH
Confidence 34445555443 58997 98655544
No 312
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=60.08 E-value=78 Score=24.59 Aligned_cols=92 Identities=14% Similarity=0.236 Sum_probs=59.0
Q ss_pred ccHHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcC-CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeE
Q 030914 61 LSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAY-NVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEF 139 (169)
Q Consensus 61 ~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~-~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~ 139 (169)
..+.+.+....+..+=++|.-+-+. .+=.+...+.+.|.+. |+....+++..+++..+.|. ..=.||+.|
T Consensus 18 ~~l~~~l~~~~~~~~~i~~IptAs~-~~~~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~~~l~------~ad~I~l~G-- 88 (212)
T cd03146 18 PAIDDLLLSLTKARPKVLFVPTASG-DRDEYTARFYAAFESLRGVEVSHLHLFDTEDPLDALL------EADVIYVGG-- 88 (212)
T ss_pred HHHHHHHHHhccCCCeEEEECCCCC-CHHHHHHHHHHHHhhccCcEEEEEeccCcccHHHHHh------cCCEEEECC--
Confidence 3566777777766666777653322 2335688899999999 99888887765555555554 335688887
Q ss_pred eeccHHHHHHHhcccHHHHHhcc
Q 030914 140 IGGSDIILNMHQSGELKEKLKGI 162 (169)
Q Consensus 140 iGG~d~l~~~~~~g~L~~~L~~~ 162 (169)
|....+....+.-.|.++|+.+
T Consensus 89 -G~~~~~~~~l~~~~l~~~l~~~ 110 (212)
T cd03146 89 -GNTFNLLAQWREHGLDAILKAA 110 (212)
T ss_pred -chHHHHHHHHHHcCHHHHHHHH
Confidence 5555544444444577777653
No 313
>PTZ00256 glutathione peroxidase; Provisional
Probab=59.95 E-value=33 Score=25.94 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=15.0
Q ss_pred CCCccHHHHHHHH-------hcCCCCeEEEEc
Q 030914 87 PQCGFSSLAVRVL-------GAYNVPISARNI 111 (169)
Q Consensus 87 ~~C~~c~~a~~~L-------~~~~v~~~~~di 111 (169)
.|||.|.+-...| ...|+.+.-+++
T Consensus 51 twCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~ 82 (183)
T PTZ00256 51 CKCGLTSDHYTQLVELYKQYKSQGLEILAFPC 82 (183)
T ss_pred CCCCchHHHHHHHHHHHHHHhhCCcEEEEEec
Confidence 5899999744333 234565555554
No 314
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=59.32 E-value=36 Score=27.37 Aligned_cols=35 Identities=14% Similarity=0.174 Sum_probs=19.7
Q ss_pred cCCeEEEeecCCCCCCCccHHHHHHH-------HhcCCCCeEEEEc
Q 030914 73 ENPVMLYMKGVPEFPQCGFSSLAVRV-------LGAYNVPISARNI 111 (169)
Q Consensus 73 ~~~Vvly~k~~~~~~~C~~c~~a~~~-------L~~~~v~~~~~di 111 (169)
...|+|+.-. .|||.|..-... +...|+.+.-+++
T Consensus 99 GK~vvl~FwA----swCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~ 140 (236)
T PLN02399 99 GKVLLIVNVA----SKCGLTSSNYSELSHLYEKYKTQGFEILAFPC 140 (236)
T ss_pred CCeEEEEEEc----CCCcchHHHHHHHHHHHHHHhcCCcEEEEEec
Confidence 3445544443 699999764332 2344566655554
No 315
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=59.21 E-value=21 Score=30.22 Aligned_cols=66 Identities=15% Similarity=0.353 Sum_probs=39.6
Q ss_pred HHHHHhhcCCeEE--EeecCCCCCCCccHHHHHHHHhcCC-----------CCeEEEEcCCCHHHHHHHHHhcCCCCCcE
Q 030914 66 VVEQDVKENPVML--YMKGVPEFPQCGFSSLAVRVLGAYN-----------VPISARNILEDPELKSAVKAFSHWPTFPQ 132 (169)
Q Consensus 66 ~i~~~~~~~~Vvl--y~k~~~~~~~C~~c~~a~~~L~~~~-----------v~~~~~di~~~~~~~~~l~~~~g~~t~P~ 132 (169)
-++.++.++.++. |.. .||+|++..+-++.+.- +=+-.+|.+....+ .....-..+|.
T Consensus 5 N~~~il~s~elvfv~FyA-----dWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~i----a~ky~I~KyPT 75 (375)
T KOG0912|consen 5 NIDSILDSNELVFVNFYA-----DWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDI----ADKYHINKYPT 75 (375)
T ss_pred cHHHhhccceEEeeeeeh-----hhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHH----hhhhccccCce
Confidence 3556677777664 344 79999999988886542 22445555544443 33333445565
Q ss_pred --EEeCCeEe
Q 030914 133 --IFIKGEFI 140 (169)
Q Consensus 133 --vfi~g~~i 140 (169)
||.||..+
T Consensus 76 lKvfrnG~~~ 85 (375)
T KOG0912|consen 76 LKVFRNGEMM 85 (375)
T ss_pred eeeeeccchh
Confidence 47788643
No 316
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=58.37 E-value=46 Score=25.66 Aligned_cols=37 Identities=8% Similarity=0.008 Sum_probs=21.6
Q ss_pred CCeEEEeecCCCCCCCccHHHHHH-------HHhcCCCCeEEEEcCC
Q 030914 74 NPVMLYMKGVPEFPQCGFSSLAVR-------VLGAYNVPISARNILE 113 (169)
Q Consensus 74 ~~Vvly~k~~~~~~~C~~c~~a~~-------~L~~~~v~~~~~di~~ 113 (169)
+.++||.--. .+||.|..-.. -|++.|+.+--+.++.
T Consensus 26 k~vvlf~~pa---~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~ 69 (203)
T cd03016 26 SWGILFSHPA---DFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDS 69 (203)
T ss_pred CEEEEEEecC---CCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 4466653211 58999986433 3455677666666654
No 317
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=57.67 E-value=19 Score=28.30 Aligned_cols=36 Identities=22% Similarity=0.253 Sum_probs=30.2
Q ss_pred hcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcC
Q 030914 72 KENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNIL 112 (169)
Q Consensus 72 ~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~ 112 (169)
....+.+|++ ..|+-|......|..-+-+++.+-|.
T Consensus 108 ~~~rlalFvk-----d~C~~C~~~~~~l~a~~~~~Diylvg 143 (200)
T TIGR03759 108 GGGRLALFVK-----DDCVACDARVQRLLADNAPLDLYLVG 143 (200)
T ss_pred CCCeEEEEeC-----CCChHHHHHHHHHhcCCCceeEEEec
Confidence 4467899999 58999999999888888888888777
No 318
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=56.78 E-value=4 Score=30.48 Aligned_cols=32 Identities=22% Similarity=0.242 Sum_probs=25.6
Q ss_pred CCcchHHHHHHHHhCCCCccc-ccCCCccccCC
Q 030914 18 SARSSRIVSGSLYHNGMKYST-DVPNDPDTHED 49 (169)
Q Consensus 18 ~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~~~~ 49 (169)
-|.+..++.++|..++++|.. ||..|++.++.
T Consensus 15 t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~E 47 (147)
T cd03031 15 TFEDCNNVRAILESFRVKFDERDVSMDSGFREE 47 (147)
T ss_pred cChhHHHHHHHHHHCCCcEEEEECCCCHHHHHH
Confidence 467778999999999999988 88877654433
No 319
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=56.76 E-value=4.1 Score=36.35 Aligned_cols=19 Identities=16% Similarity=0.342 Sum_probs=15.5
Q ss_pred CCCccHHHHHHHHhcCCCC
Q 030914 87 PQCGFSSLAVRVLGAYNVP 105 (169)
Q Consensus 87 ~~C~~c~~a~~~L~~~~v~ 105 (169)
|||+||++..-++++++-.
T Consensus 394 PWCgHCk~laP~~eeLAe~ 412 (493)
T KOG0190|consen 394 PWCGHCKALAPIYEELAEK 412 (493)
T ss_pred cccchhhhhhhHHHHHHHH
Confidence 8999999999887776543
No 320
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=56.52 E-value=29 Score=26.28 Aligned_cols=85 Identities=12% Similarity=0.034 Sum_probs=47.4
Q ss_pred CCCCCcchHHHHHHHHhCCCCccc-ccCCCccccCCCCCcccccCCcccHHHHHHHHhhcCCeEEEeecCCCCCCCccHH
Q 030914 15 SYPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKVDASGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSS 93 (169)
Q Consensus 15 ~~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~~~~~k~~s~~pt~~~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~ 93 (169)
+.|.-.++..+.+++.++|..... ++...+.. ..+.+.+.+.+...++...|+++--+........-=.
T Consensus 102 r~P~G~~~~~~~~~l~~~G~~~v~w~~~~~D~~----------~~~~~~i~~~~~~~~~~g~Iil~Hd~~~~~~t~~~l~ 171 (191)
T TIGR02764 102 RPPSGAFNKAVLKAAESLGYTVVHWSVDSRDWK----------NPGVESIVDRVVKNTKPGDIILLHASDSAKQTVKALP 171 (191)
T ss_pred ECCCcCCCHHHHHHHHHcCCeEEEecCCCCccC----------CCCHHHHHHHHHhcCCCCCEEEEeCCCCcHhHHHHHH
Confidence 467777888999999999988655 65543211 0122233444445556677888773210000011123
Q ss_pred HHHHHHhcCCCCeEEE
Q 030914 94 LAVRVLGAYNVPISAR 109 (169)
Q Consensus 94 ~a~~~L~~~~v~~~~~ 109 (169)
.+...|++.|..|..+
T Consensus 172 ~~i~~l~~~Gy~~vtl 187 (191)
T TIGR02764 172 TIIKKLKEKGYEFVTI 187 (191)
T ss_pred HHHHHHHHCCCEEEEH
Confidence 4455667777766543
No 321
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=55.97 E-value=13 Score=27.37 Aligned_cols=50 Identities=10% Similarity=0.128 Sum_probs=30.7
Q ss_pred HHHHHHHhcCCCCeEEEEc-CCCHHHHHHHH------HhcCCCCCcEEEeCCeEeec
Q 030914 93 SLAVRVLGAYNVPISARNI-LEDPELKSAVK------AFSHWPTFPQIFIKGEFIGG 142 (169)
Q Consensus 93 ~~a~~~L~~~~v~~~~~di-~~~~~~~~~l~------~~~g~~t~P~vfi~g~~iGG 142 (169)
..+.+++.+.|++.+.+.- ..+.++++.+. ...|-..+|.++|||+++-+
T Consensus 100 ~~l~~~a~~~Gl~~~~~~~~~~s~~~~~~i~~~~~~~~~~gi~gTPt~iInG~~~~~ 156 (178)
T cd03019 100 DDIRKIFLSQGVDKKKFDAAYNSFSVKALVAKAEKLAKKYKITGVPAFVVNGKYVVN 156 (178)
T ss_pred HHHHHHHHHhCCCHHHHHHHHhCHHHHHHHHHHHHHHHHcCCCCCCeEEECCEEEEC
Confidence 4577788888886543221 12333333332 23478899999999997644
No 322
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=55.58 E-value=21 Score=29.35 Aligned_cols=58 Identities=16% Similarity=0.162 Sum_probs=39.2
Q ss_pred CeEEEeecCCCCCCCccHHHHHHHHhcCCCC-----eEEEEcCCCHHHHHHHHHhcCCCCCcEE--EeCCeEee
Q 030914 75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVP-----ISARNILEDPELKSAVKAFSHWPTFPQI--FIKGEFIG 141 (169)
Q Consensus 75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~-----~~~~di~~~~~~~~~l~~~~g~~t~P~v--fi~g~~iG 141 (169)
-||=|+. .||+.|+++--++..+--+ |-.+||++-.. ...-.|....|.. |.||.-|-
T Consensus 24 v~Vdfta-----~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~----taa~~gV~amPTFiff~ng~kid 88 (288)
T KOG0908|consen 24 VVVDFTA-----SWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRG----TAATNGVNAMPTFIFFRNGVKID 88 (288)
T ss_pred EEEEEEe-----cccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhc----hhhhcCcccCceEEEEecCeEee
Confidence 3555666 6999999999999876543 56778854322 3333466777765 78987653
No 323
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=54.78 E-value=43 Score=25.18 Aligned_cols=61 Identities=13% Similarity=0.064 Sum_probs=36.6
Q ss_pred eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCC-----------CCcEEEeCCe
Q 030914 76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWP-----------TFPQIFIKGE 138 (169)
Q Consensus 76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~-----------t~P~vfi~g~ 138 (169)
|++++-|.+....+..-.++.+.+++.||..-.+-|.. .-...|.++++.+ -.|++||+++
T Consensus 113 iillTDG~~~~~~~~~~~~~~~~~~~~gi~i~~vgig~--~~~~~L~~IA~~~~~~~~~~~~~~l~~~~~~~~~ 184 (186)
T cd01480 113 LLVITDGHSDGSPDGGIEKAVNEADHLGIKIFFVAVGS--QNEEPLSRIACDGKSALYRENFAELLWSFFIDDE 184 (186)
T ss_pred EEEEeCCCcCCCcchhHHHHHHHHHHCCCEEEEEecCc--cchHHHHHHHcCCcchhhhcchhhhccccccccc
Confidence 56667775422234445666777889999877777754 2233455554322 3477888765
No 324
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=53.55 E-value=69 Score=24.30 Aligned_cols=38 Identities=8% Similarity=-0.008 Sum_probs=21.9
Q ss_pred hcCCeEEEee-cCCCCCCCccHHHHHH-------HHhcCCCCeEEEEcCC
Q 030914 72 KENPVMLYMK-GVPEFPQCGFSSLAVR-------VLGAYNVPISARNILE 113 (169)
Q Consensus 72 ~~~~Vvly~k-~~~~~~~C~~c~~a~~-------~L~~~~v~~~~~di~~ 113 (169)
+.+.++||.- + .+||.|..-.. -|.+.|+.+--+.++.
T Consensus 30 ~Gk~vvl~F~p~----~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~ 75 (187)
T TIGR03137 30 KGKWSVFFFYPA----DFTFVCPTELEDLADKYAELKKLGVEVYSVSTDT 75 (187)
T ss_pred CCCEEEEEEECC----CcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCC
Confidence 3445666653 3 48999997443 3344566665555543
No 325
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=51.74 E-value=22 Score=29.85 Aligned_cols=105 Identities=12% Similarity=0.069 Sum_probs=64.8
Q ss_pred CCCCCCCcchHH-HHHHHHhCCCCccc-ccCCCccccCCCCCcccc-----------cC-Ccc---cHHHHHHHHhhcCC
Q 030914 13 IASYPSARSSRI-VSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKV-----------DA-SGL---SLKEVVEQDVKENP 75 (169)
Q Consensus 13 ~~~~p~cgfs~~-~~~~l~~~g~~~~s-~vl~d~~~~~~~k~~s~~-----------pt-~~~---~~~~~i~~~~~~~~ 75 (169)
+...+--||+.. .++.|+..|++... .|.. ++|.+++-.... |+ +.+ ...++++.++.++.
T Consensus 54 ~a~GflGg~tg~~~~~~l~~~gi~~~fv~v~g--~TRinvki~~~~~~~~Tein~~Gp~is~~~~~~~l~~~~~~l~~~d 131 (310)
T COG1105 54 TALGFLGGFTGEFFVALLKDEGIPDAFVEVKG--DTRINVKILDEEDGEETEINFPGPEISEAELEQFLEQLKALLESDD 131 (310)
T ss_pred eEEEecCCccHHHHHHHHHhcCCCceEEEccC--CCeeeEEEEecCCCcEEEecCCCCCCCHHHHHHHHHHHHHhcccCC
Confidence 344566677774 58899998886554 4443 344444433331 11 222 33556667778899
Q ss_pred eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHH
Q 030914 76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAV 121 (169)
Q Consensus 76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l 121 (169)
+++.+-+.|..-.=-++.+..+++++.|+.+ .+|.+ ++.+++.|
T Consensus 132 ~VvlsGSlP~g~~~d~y~~li~~~~~~g~~v-ilD~S-g~~L~~~L 175 (310)
T COG1105 132 IVVLSGSLPPGVPPDAYAELIRILRQQGAKV-ILDTS-GEALLAAL 175 (310)
T ss_pred EEEEeCCCCCCCCHHHHHHHHHHHHhcCCeE-EEECC-hHHHHHHH
Confidence 9999988875444568999999999998754 34553 33343433
No 326
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=50.90 E-value=13 Score=23.64 Aligned_cols=13 Identities=31% Similarity=0.631 Sum_probs=11.2
Q ss_pred EEeCCeEeeccHH
Q 030914 133 IFIKGEFIGGSDI 145 (169)
Q Consensus 133 vfi~g~~iGG~d~ 145 (169)
||+||.+||=.++
T Consensus 1 VFlNG~~iG~~~~ 13 (63)
T PF04566_consen 1 VFLNGVWIGIHSD 13 (63)
T ss_dssp EEETTEEEEEESS
T ss_pred CEECCEEEEEEcC
Confidence 7999999997655
No 327
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=50.45 E-value=28 Score=24.38 Aligned_cols=35 Identities=11% Similarity=0.073 Sum_probs=26.1
Q ss_pred CCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEc
Q 030914 74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNI 111 (169)
Q Consensus 74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di 111 (169)
..|+|+..|... =....++++.|.++|+.++.-|-
T Consensus 53 peiliiGTG~~~---~~~~~~~~~~l~~~gI~vE~m~T 87 (109)
T cd00248 53 PDILLIGTGAEI---AFLPRALRAALRAAGIGVEVMST 87 (109)
T ss_pred CCEEEEcCCCCC---CcCCHHHHHHHHHcCCeEEEeCc
Confidence 569999877532 23457889999999999877665
No 328
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=49.96 E-value=14 Score=32.16 Aligned_cols=29 Identities=7% Similarity=0.139 Sum_probs=25.4
Q ss_pred CCCCcchHHHHHHHHhCCCCccc-ccCCCc
Q 030914 16 YPSARSSRIVSGSLYHNGMKYST-DVPNDP 44 (169)
Q Consensus 16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~ 44 (169)
.|.|+++.++.+.|..+|++|.. ||..|+
T Consensus 9 ~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~ 38 (410)
T PRK12759 9 KTNCPFCDLAKSWFGANDIPFTQISLDDDV 38 (410)
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEECCCCh
Confidence 38899999999999999999998 887665
No 329
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=49.35 E-value=24 Score=24.62 Aligned_cols=51 Identities=16% Similarity=0.096 Sum_probs=31.8
Q ss_pred CCccHHHHHH-HHhcCCCCeEEEEcCC--CHHHHHHHHHhcCCCCCcEEEeCCeEee
Q 030914 88 QCGFSSLAVR-VLGAYNVPISARNILE--DPELKSAVKAFSHWPTFPQIFIKGEFIG 141 (169)
Q Consensus 88 ~C~~c~~a~~-~L~~~~v~~~~~di~~--~~~~~~~l~~~~g~~t~P~vfi~g~~iG 141 (169)
.|..|..|.. .|.+.||+.+.+.+.. ..+.. -..++.+. + -.|-.||.|.|
T Consensus 20 qC~~cA~Al~~~L~~~gI~Gk~i~l~T~~~~~~~-I~sd~~~~-~-~sIt~NG~H~g 73 (100)
T PF15643_consen 20 QCVECASALKQFLKQAGIPGKIIRLYTGYHEGPF-IYSDRLGP-Q-ESITTNGRHYG 73 (100)
T ss_pred ehHHHHHHHHHHHHHCCCCceEEEEEecCCCCce-ehhhhhcC-C-cceeeCCEEEE
Confidence 5999987655 9999999988887764 21111 11122211 1 45677888766
No 330
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=48.88 E-value=37 Score=31.56 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=29.8
Q ss_pred cCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCC
Q 030914 73 ENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILED 114 (169)
Q Consensus 73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~ 114 (169)
..+|+||+. .|-.|...-+.|...|++...++=..+
T Consensus 473 ~~pvLIft~------t~~~se~L~~~L~~~gi~~~~Lhg~~~ 508 (656)
T PRK12898 473 GRPVLVGTR------SVAASERLSALLREAGLPHQVLNAKQD 508 (656)
T ss_pred CCCEEEEeC------cHHHHHHHHHHHHHCCCCEEEeeCCcH
Confidence 468999998 478899999999999999887776543
No 331
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=48.13 E-value=67 Score=31.51 Aligned_cols=26 Identities=19% Similarity=0.051 Sum_probs=17.7
Q ss_pred hhcCCeEEEeecCCCCCCCccHHHHHHHHh
Q 030914 71 VKENPVMLYMKGVPEFPQCGFSSLAVRVLG 100 (169)
Q Consensus 71 ~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~ 100 (169)
.+...|+|+... .||+.|+.....|+
T Consensus 418 lkGK~vll~FWA----sWC~pC~~e~P~L~ 443 (1057)
T PLN02919 418 LKGKVVILDFWT----YCCINCMHVLPDLE 443 (1057)
T ss_pred cCCCEEEEEEEC----CcChhHHhHhHHHH
Confidence 345566666554 59999998666554
No 332
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=46.64 E-value=1.3e+02 Score=23.03 Aligned_cols=93 Identities=11% Similarity=0.006 Sum_probs=61.3
Q ss_pred HHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCC----CcEEEeCCeE
Q 030914 64 KEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPT----FPQIFIKGEF 139 (169)
Q Consensus 64 ~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t----~P~vfi~g~~ 139 (169)
-+.++..-.++.|.+|+.+-.....-+.-.+|+.+=++.||++..+.+....-..+.+...+|..+ --.+||+++.
T Consensus 70 ie~~~~vygek~i~v~SNsaG~~~~D~d~s~Ak~le~k~gIpVlRHs~kKP~ct~E~~~y~~~Nshv~~~se~~~vGDRl 149 (190)
T KOG2961|consen 70 IERCKAVYGEKDIAVFSNSAGLTEYDHDDSKAKALEAKIGIPVLRHSVKKPACTAEEVEYHFGNSHVCTSSELIMVGDRL 149 (190)
T ss_pred HHHHHHHhCcccEEEEecCcCccccCCchHHHHHHHHhhCCceEeecccCCCccHHHHHHHhCCcccCChhHeEEEccch
Confidence 355666778889999987655556667778999999999999988888654333333444445332 2456888775
Q ss_pred eeccHHHHHHHhcccHHHHH
Q 030914 140 IGGSDIILNMHQSGELKEKL 159 (169)
Q Consensus 140 iGG~d~l~~~~~~g~L~~~L 159 (169)
+.++.-.+..|.+--|+
T Consensus 150 ---fTDI~~aN~mGs~gVw~ 166 (190)
T KOG2961|consen 150 ---FTDIVYANRMGSLGVWT 166 (190)
T ss_pred ---hhhHhhhhhccceeEEe
Confidence 44455555556654444
No 333
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=46.06 E-value=16 Score=27.22 Aligned_cols=32 Identities=25% Similarity=0.410 Sum_probs=22.0
Q ss_pred eEEEeecCCCCCCCccHHHHHHHH----hcC-CCCeEEEEcC
Q 030914 76 VMLYMKGVPEFPQCGFSSLAVRVL----GAY-NVPISARNIL 112 (169)
Q Consensus 76 Vvly~k~~~~~~~C~~c~~a~~~L----~~~-~v~~~~~di~ 112 (169)
|++|.. +.||||..+...| +.. ++.++.+-+.
T Consensus 2 i~~~~D-----~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~ 38 (193)
T PF01323_consen 2 IEFFFD-----FICPWCYLASPRLRKLRAEYPDVEIEWRPFP 38 (193)
T ss_dssp EEEEEB-----TTBHHHHHHHHHHHHHHHHHTTCEEEEEEES
T ss_pred EEEEEe-----CCCHHHHHHHHHHHHHHHHhcCCcEEEeccc
Confidence 677777 7899998766544 444 6776665554
No 334
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=45.91 E-value=16 Score=27.61 Aligned_cols=22 Identities=14% Similarity=0.332 Sum_probs=16.5
Q ss_pred cCCCCCcEEEeCCeE-eeccHHH
Q 030914 125 SHWPTFPQIFIKGEF-IGGSDII 146 (169)
Q Consensus 125 ~g~~t~P~vfi~g~~-iGG~d~l 146 (169)
.|-..+|.++|||++ +.|....
T Consensus 171 ~gv~G~Pt~vv~g~~~~~G~~~~ 193 (201)
T cd03024 171 LGISGVPFFVFNGKYAVSGAQPP 193 (201)
T ss_pred CCCCcCCEEEECCeEeecCCCCH
Confidence 477899999999874 5665443
No 335
>PRK15000 peroxidase; Provisional
Probab=45.52 E-value=1.1e+02 Score=23.63 Aligned_cols=39 Identities=5% Similarity=-0.002 Sum_probs=21.6
Q ss_pred hcCCeEEEeecCCCCCCCccHHHHHHH-------HhcCCCCeEEEEcCC
Q 030914 72 KENPVMLYMKGVPEFPQCGFSSLAVRV-------LGAYNVPISARNILE 113 (169)
Q Consensus 72 ~~~~Vvly~k~~~~~~~C~~c~~a~~~-------L~~~~v~~~~~di~~ 113 (169)
+.+.|+||.-.. .+||.|..-..- |.+.|+.+--+.++.
T Consensus 33 ~gk~vvL~F~p~---~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~ 78 (200)
T PRK15000 33 NGKTTVLFFWPM---DFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDS 78 (200)
T ss_pred CCCEEEEEEECC---CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 455677776521 368888864333 344555555555543
No 336
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=45.26 E-value=1.2e+02 Score=22.33 Aligned_cols=46 Identities=9% Similarity=0.144 Sum_probs=32.1
Q ss_pred HHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe---CCeEe
Q 030914 93 SLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFI---KGEFI 140 (169)
Q Consensus 93 ~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi---~g~~i 140 (169)
..+.++++++++.|..+.+..+ ....+.+..+...+|..|+ +|+.+
T Consensus 78 ~~~~~f~~~~~~~~~~~p~~~~--~~~~l~~~y~v~~iPt~vlId~~G~Vv 126 (146)
T cd03008 78 QQQESFLKDMPKKWLFLPFEDE--FRRELEAQFSVEELPTVVVLKPDGDVL 126 (146)
T ss_pred HHHHHHHHHCCCCceeecccch--HHHHHHHHcCCCCCCEEEEECCCCcEE
Confidence 4588899999988766554432 2235666667889999977 66666
No 337
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=45.22 E-value=24 Score=24.83 Aligned_cols=36 Identities=8% Similarity=0.021 Sum_probs=30.6
Q ss_pred cCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcC
Q 030914 73 ENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNIL 112 (169)
Q Consensus 73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~ 112 (169)
..+|+|.+.| .....|.+|.+.|.+.|++...+|+.
T Consensus 9 g~di~iia~G----~~~~~al~A~~~L~~~Gi~~~vi~~~ 44 (124)
T PF02780_consen 9 GADITIIAYG----SMVEEALEAAEELEEEGIKAGVIDLR 44 (124)
T ss_dssp SSSEEEEEET----THHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CCCEEEEeeh----HHHHHHHHHHHHHHHcCCceeEEeeE
Confidence 4678899888 46788999999999999998888874
No 338
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=43.83 E-value=69 Score=25.68 Aligned_cols=69 Identities=10% Similarity=0.027 Sum_probs=44.1
Q ss_pred CcccHHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcC------CCCeEEEEcCCCHHHHHHHHHhcCC
Q 030914 59 SGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAY------NVPISARNILEDPELKSAVKAFSHW 127 (169)
Q Consensus 59 ~~~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~------~v~~~~~di~~~~~~~~~l~~~~g~ 127 (169)
.+...++.++++-..=.|.+|....-....-++=.+++.+|+++ +|.++.+|.+.+++..+......|-
T Consensus 12 LS~~T~~~L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi 86 (271)
T PF09822_consen 12 LSDQTKKVLKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGI 86 (271)
T ss_pred CCHHHHHHHHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCC
Confidence 34455677777766555666655310111355677888899877 6889999997777766664444443
No 339
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=43.08 E-value=67 Score=26.21 Aligned_cols=80 Identities=11% Similarity=-0.030 Sum_probs=48.7
Q ss_pred CCCCcchHHHHHHHHhCCCCccc-ccCCCccccCCCCCcccccC-CcccHHHHHHHHhhcCCeEEEeecCCCCCCCccHH
Q 030914 16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKVDA-SGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSS 93 (169)
Q Consensus 16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~~~~~k~~s~~pt-~~~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~ 93 (169)
.|...++..+.+++.++|..... ++-..+ |.. +.+.+.+.+.+.+....|+|.--+. .....-.
T Consensus 182 pP~G~~n~~~~~~l~~~G~~~v~Wsvd~~D-----------w~~~~~~~i~~~v~~~~~~G~IILmHd~~---~T~~aL~ 247 (268)
T TIGR02873 182 PPSGSFNDNVVQIAADLQMGTIMWTVDTID-----------WKNPSPSVMVNRVLSKIHPGAMVLMHPTA---SSTEGLE 247 (268)
T ss_pred CCCCCCCHHHHHHHHHCCCeEEEeccCCCC-----------CCCCCHHHHHHHHHhcCCCCcEEEEcCCc---cHHHHHH
Confidence 46666788999999999988755 554321 211 2223444554445667788775431 2234455
Q ss_pred HHHHHHhcCCCCeEEE
Q 030914 94 LAVRVLGAYNVPISAR 109 (169)
Q Consensus 94 ~a~~~L~~~~v~~~~~ 109 (169)
.+...|++.|..|..+
T Consensus 248 ~iI~~Lk~kGy~fvtl 263 (268)
T TIGR02873 248 EMITIIKEKGYKIGTI 263 (268)
T ss_pred HHHHHHHHCCCEEEeH
Confidence 6667778888777554
No 340
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=42.98 E-value=70 Score=22.70 Aligned_cols=43 Identities=14% Similarity=0.200 Sum_probs=33.3
Q ss_pred HHHHHHHh---hcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCe
Q 030914 64 KEVVEQDV---KENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPI 106 (169)
Q Consensus 64 ~~~i~~~~---~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~ 106 (169)
+..++.++ ....+.+++.|+...+.-+-...+.+.|+++|++.
T Consensus 16 Eai~~~~~~~~~~~~~~v~SAG~~~~~~~~~~~~a~~~l~~~gid~ 61 (138)
T PF01451_consen 16 EAILRHLLKQRLGDRFEVESAGTEAWPGEPVDPRAIAVLKEHGIDI 61 (138)
T ss_dssp HHHHHHHHHHTHTTTEEEEEEESSSTTTSSSTHHHHHHHHHTTSSC
T ss_pred HHHHHHhccccccCCcEEEEEeecccccccccchHHHHHHHhCCCc
Confidence 34444444 34689999999975578888999999999999864
No 341
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=42.56 E-value=46 Score=23.78 Aligned_cols=49 Identities=12% Similarity=0.220 Sum_probs=33.7
Q ss_pred CCCccHHHHHHHHhcCC-----CCeEEEEcCCCHHHHHHHHHhcC--CCCCcEEEeCCe
Q 030914 87 PQCGFSSLAVRVLGAYN-----VPISARNILEDPELKSAVKAFSH--WPTFPQIFIKGE 138 (169)
Q Consensus 87 ~~C~~c~~a~~~L~~~~-----v~~~~~di~~~~~~~~~l~~~~g--~~t~P~vfi~g~ 138 (169)
-.||+|..+--+|...- ++++.++-..- |..+.+..| .-+.|++..++.
T Consensus 22 f~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RP---R~~vi~llGE~~QslPvLVL~~~ 77 (112)
T PF11287_consen 22 FYCPHCAAIEGLLASFPDLRERLDVRRVDFPRP---RQAVIALLGEANQSLPVLVLADG 77 (112)
T ss_pred EECCchHHHHhHHhhChhhhhcccEEEeCCCCc---hHHHHHHhChhccCCCEEEeCCC
Confidence 36999999999998763 55555555432 445555554 568899988664
No 342
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=42.40 E-value=1.1e+02 Score=20.78 Aligned_cols=32 Identities=28% Similarity=0.427 Sum_probs=23.5
Q ss_pred HhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCC
Q 030914 70 DVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVP 105 (169)
Q Consensus 70 ~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~ 105 (169)
+-...+|++|..+ ..|.....+...|...|.+
T Consensus 61 i~~~~~vvvyc~~----g~~~~s~~~a~~l~~~G~~ 92 (110)
T cd01521 61 LDKEKLFVVYCDG----PGCNGATKAALKLAELGFP 92 (110)
T ss_pred CCCCCeEEEEECC----CCCchHHHHHHHHHHcCCe
Confidence 3356789999763 3466778888899999885
No 343
>PRK13599 putative peroxiredoxin; Provisional
Probab=42.23 E-value=1e+02 Score=24.16 Aligned_cols=39 Identities=5% Similarity=0.009 Sum_probs=21.9
Q ss_pred hcCCeEEEeecCCCCCCCccHHHHH-------HHHhcCCCCeEEEEcCC
Q 030914 72 KENPVMLYMKGVPEFPQCGFSSLAV-------RVLGAYNVPISARNILE 113 (169)
Q Consensus 72 ~~~~Vvly~k~~~~~~~C~~c~~a~-------~~L~~~~v~~~~~di~~ 113 (169)
....++||.--. .+||.|..-. .-+.+.|+.+--+.++.
T Consensus 27 ~Gk~vVL~~~pa---~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~ 72 (215)
T PRK13599 27 AGKWFVLFSHPA---DFTPVCTTEFVEFARKANDFKELNTELIGLSVDQ 72 (215)
T ss_pred CCCeEEEEEeCC---CCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 334555543211 5899998633 33445577666666654
No 344
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=41.72 E-value=90 Score=22.53 Aligned_cols=49 Identities=12% Similarity=0.030 Sum_probs=30.1
Q ss_pred ccHHHHHHHHhhcCCeEEEeecCCCCCCCccHH------------HHHHHHhcCCCCeEEEEcCC
Q 030914 61 LSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSS------------LAVRVLGAYNVPISARNILE 113 (169)
Q Consensus 61 ~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~------------~a~~~L~~~~v~~~~~di~~ 113 (169)
..+.+.++++.+..-.++|..|- + ..... ...++|++++++|..+-+..
T Consensus 27 ~~~ie~L~~l~~~G~~IiiaTGR---~-~~~~~~n~~~i~~~~~~~t~~wL~k~~ipYd~l~~~k 87 (126)
T TIGR01689 27 LAVIEKLRHYKALGFEIVISSSR---N-MRTYEGNVGKINIHTLPIIILWLNQHNVPYDEIYVGK 87 (126)
T ss_pred HHHHHHHHHHHHCCCEEEEECCC---C-chhhhccccccchhhHHHHHHHHHHcCCCCceEEeCC
Confidence 35566677665544444454431 1 22223 67889999999998877753
No 345
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=41.63 E-value=54 Score=23.62 Aligned_cols=47 Identities=19% Similarity=0.237 Sum_probs=29.9
Q ss_pred CCCccHH-----------HHHHHHhcCCCC--eEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEe
Q 030914 87 PQCGFSS-----------LAVRVLGAYNVP--ISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFI 140 (169)
Q Consensus 87 ~~C~~c~-----------~a~~~L~~~~v~--~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~i 140 (169)
..|+.|. ++...|...|+. ++++.+......++. -.-|.|.|||+.|
T Consensus 13 ~tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~~~~~~~-------~~S~~I~inG~pi 72 (120)
T PF10865_consen 13 KTCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDEEEFARQP-------LESPTIRINGRPI 72 (120)
T ss_pred CcCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChHHHhhcc-------cCCCeeeECCEeh
Confidence 4677776 344457788876 556666543222222 4679999999876
No 346
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=41.61 E-value=45 Score=24.67 Aligned_cols=66 Identities=20% Similarity=0.250 Sum_probs=35.9
Q ss_pred CeEEEeecCCCCCCCccHHHHHHHHhcCCC--CeEEEEcCCCHHHHHHHHHhcCC-CC--CcEEEe-CCeEeeccHHHHH
Q 030914 75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNV--PISARNILEDPELKSAVKAFSHW-PT--FPQIFI-KGEFIGGSDIILN 148 (169)
Q Consensus 75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v--~~~~~di~~~~~~~~~l~~~~g~-~t--~P~vfi-~g~~iGG~d~l~~ 148 (169)
.||+|-. .|++|...+++|.++.- .+...++.. +.-+..+ +..|- +. .=.+++ +|+..-|.|-+.+
T Consensus 10 ~vvlyDG------~C~lC~~~vrfLi~~D~~~~i~f~~~q~-e~g~~~l-~~~~l~~~~~~s~~~~~~g~~~~~sdA~~~ 81 (137)
T COG3011 10 LVVLYDG------VCPLCDGWVRFLIRRDQGGRIRFAALQS-EPGQALL-EAAGLDPEDVDSVLLVEAGQLLVGSDAAIR 81 (137)
T ss_pred EEEEECC------cchhHHHHHHHHHHhccCCcEEEEeccC-chhhhHH-hhcCCChhhhheeeEecCCceEeccHHHHH
Confidence 4666643 69999999999987743 355566633 2222333 33332 21 223444 4555556654443
No 347
>PF08599 Nbs1_C: DNA damage repair protein Nbs1; InterPro: IPR013908 This C-terminal region of the DNA damage repair protein Nbs1 has been identified to be necessary for the binding of Mre11 and Tel1 [].
Probab=41.57 E-value=15 Score=23.48 Aligned_cols=33 Identities=36% Similarity=0.509 Sum_probs=21.9
Q ss_pred cCCCCCcEEEeCCeEeeccHHHHH-HHhcccHHHHHhccc
Q 030914 125 SHWPTFPQIFIKGEFIGGSDIILN-MHQSGELKEKLKGIA 163 (169)
Q Consensus 125 ~g~~t~P~vfi~g~~iGG~d~l~~-~~~~g~L~~~L~~~~ 163 (169)
.|...+|.| |||.|-+.. .-++-+|.+||+.+.
T Consensus 13 pGa~~lP~I------IGGSDLi~h~~~knseleeWl~~e~ 46 (65)
T PF08599_consen 13 PGAGGLPHI------IGGSDLIAHHAGKNSELEEWLRQEM 46 (65)
T ss_pred CCCCCCCee------ecchhhhhccccccccHHHHHHHHH
Confidence 466677765 788885544 334467999997654
No 348
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=41.51 E-value=30 Score=32.06 Aligned_cols=80 Identities=21% Similarity=0.159 Sum_probs=49.5
Q ss_pred cCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCC----CHHHHHHHHHhcCCCCCcEEEeCCeEeeccHH-HH
Q 030914 73 ENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILE----DPELKSAVKAFSHWPTFPQIFIKGEFIGGSDI-IL 147 (169)
Q Consensus 73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~----~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~-l~ 147 (169)
..+|+|.+.| .....|.+|.+.|++.|+..+.+|+.. |.+....+.+. +--.|.+.+..+||+.. +.
T Consensus 544 G~dvtIva~G----~~v~~Al~AA~~L~~~GI~v~VId~rsikPlD~~~i~sl~k~----~~~vVt~Ee~~~GG~Gs~Va 615 (641)
T PLN02234 544 GERVALLGYG----SAVQRCLEAASMLSERGLKITVADARFCKPLDVALIRSLAKS----HEVLITVEEGSIGGFGSHVV 615 (641)
T ss_pred CCCEEEEEec----HHHHHHHHHHHHHHhcCCCEEEEecCCcCCCCHHHHHHHHHh----CCEEEEECCCCCCcHHHHHH
Confidence 3456666666 355678899999999999999999973 44443333221 22344555555698743 33
Q ss_pred -HHHhcccHHHHHh
Q 030914 148 -NMHQSGELKEKLK 160 (169)
Q Consensus 148 -~~~~~g~L~~~L~ 160 (169)
.+.+.|.++..++
T Consensus 616 ~~l~e~~~~~~~~~ 629 (641)
T PLN02234 616 QFLALDGLLDGKLK 629 (641)
T ss_pred HHHHHcCCCCCCce
Confidence 3556665555443
No 349
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=41.27 E-value=1.4e+02 Score=21.86 Aligned_cols=44 Identities=16% Similarity=0.055 Sum_probs=23.5
Q ss_pred hcCCeEEEeecCCCCCCCccHHHH--------HHHHhcCCCC-eEEEEcCCCHHHH
Q 030914 72 KENPVMLYMKGVPEFPQCGFSSLA--------VRVLGAYNVP-ISARNILEDPELK 118 (169)
Q Consensus 72 ~~~~Vvly~k~~~~~~~C~~c~~a--------~~~L~~~~v~-~~~~di~~~~~~~ 118 (169)
...+++||.--. .+||.|..- ..-|++.|+. +--+..+.....+
T Consensus 28 ~gk~vvl~fyP~---~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~ 80 (155)
T cd03013 28 KGKKVVIFGVPG---AFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMK 80 (155)
T ss_pred CCCcEEEEEeCC---CCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHH
Confidence 344666665421 468887754 3445556663 5555554444433
No 350
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=40.86 E-value=1.3e+02 Score=24.50 Aligned_cols=42 Identities=7% Similarity=-0.050 Sum_probs=25.7
Q ss_pred HHHhhcCCeEEEee-cCCCCCCCccHHH-------HHHHHhcCCCCeEEEEcCC
Q 030914 68 EQDVKENPVMLYMK-GVPEFPQCGFSSL-------AVRVLGAYNVPISARNILE 113 (169)
Q Consensus 68 ~~~~~~~~Vvly~k-~~~~~~~C~~c~~-------a~~~L~~~~v~~~~~di~~ 113 (169)
.+..+...|+||.- + .+||.|.. ..+-+.+.|+.+--+.++.
T Consensus 93 sd~~kgk~vVL~FyPa----~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds 142 (261)
T PTZ00137 93 SDYFKDSYGLLVFYPL----DFTFVCPSELLGFSERLKEFEERGVKVLGVSVDS 142 (261)
T ss_pred HHHcCCCeEEEEEECC----CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 44445556777754 3 48999987 3334455677766666654
No 351
>PF05122 SpdB: Mobile element transfer protein; InterPro: IPR007806 This family is found in proteins involved in transferring a group of integrating conjugative DNA elements, such as pSAM2 from Streptomyces ambofaciens during mating []. Their precise role is not known.
Probab=40.77 E-value=12 Score=22.75 Aligned_cols=9 Identities=22% Similarity=0.187 Sum_probs=7.2
Q ss_pred CCCCCcchH
Q 030914 15 SYPSARSSR 23 (169)
Q Consensus 15 ~~p~cgfs~ 23 (169)
..|.||||+
T Consensus 25 ta~~Cg~Sa 33 (53)
T PF05122_consen 25 TAPRCGFSA 33 (53)
T ss_pred cCCCCCccc
Confidence 469999975
No 352
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=40.73 E-value=1e+02 Score=23.51 Aligned_cols=38 Identities=11% Similarity=0.115 Sum_probs=20.4
Q ss_pred CCeEEEeecCCCCCCCccHHHHH-------HHHhcCCCCeEEEEcCCC
Q 030914 74 NPVMLYMKGVPEFPQCGFSSLAV-------RVLGAYNVPISARNILED 114 (169)
Q Consensus 74 ~~Vvly~k~~~~~~~C~~c~~a~-------~~L~~~~v~~~~~di~~~ 114 (169)
+.++||.... .+|+.|.... +-|...|+.+.-+.++..
T Consensus 37 k~~lL~F~p~---~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~ 81 (199)
T PTZ00253 37 KWVVLFFYPL---DFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSE 81 (199)
T ss_pred CEEEEEEEcC---CCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCH
Confidence 3455554421 3566666432 334555777777776643
No 353
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=40.53 E-value=1.2e+02 Score=20.83 Aligned_cols=64 Identities=17% Similarity=0.064 Sum_probs=37.8
Q ss_pred HHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCc-EEEeC
Q 030914 64 KEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFP-QIFIK 136 (169)
Q Consensus 64 ~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P-~vfi~ 136 (169)
...+.++.+...+.+..-+. ...-..+++++++++++|..+.++.+.. +....+...+| .++|+
T Consensus 44 ~~~l~~l~~~~~~~vv~v~~-----~~~~~~~~~~~~~~~~~~~~~~~D~~~~----~~~~~~v~~~P~~~~ld 108 (127)
T cd03010 44 HPVLMALARQGRVPIYGINY-----KDNPENALAWLARHGNPYAAVGFDPDGR----VGIDLGVYGVPETFLID 108 (127)
T ss_pred HHHHHHHHHhcCcEEEEEEC-----CCCHHHHHHHHHhcCCCCceEEECCcch----HHHhcCCCCCCeEEEEC
Confidence 34455555444454443321 1234567789999999887666655433 33445777899 66674
No 354
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=40.38 E-value=1.1e+02 Score=20.51 Aligned_cols=55 Identities=13% Similarity=0.117 Sum_probs=35.5
Q ss_pred HHHHHHHh-hcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHh
Q 030914 64 KEVVEQDV-KENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAF 124 (169)
Q Consensus 64 ~~~i~~~~-~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~ 124 (169)
...+.+.. ...++++|... ...+..+.+.|.+.+.++..+.=..++..+..+.+.
T Consensus 18 ~~~i~~~~~~~~~~lvf~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (131)
T cd00079 18 LELLKEHLKKGGKVLIFCPS------KKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKD 73 (131)
T ss_pred HHHHHhcccCCCcEEEEeCc------HHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHH
Confidence 33444433 34678999873 577889999998877776666555555555555443
No 355
>KOG2454 consensus Betaine aldehyde dehydrogenase [Energy production and conversion]
Probab=40.17 E-value=37 Score=29.75 Aligned_cols=60 Identities=13% Similarity=0.266 Sum_probs=42.1
Q ss_pred HHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCC-CHHHHHHHH
Q 030914 63 LKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILE-DPELKSAVK 122 (169)
Q Consensus 63 ~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~-~~~~~~~l~ 122 (169)
+.-.|..+...|.||+=...-..-..|-||+-++..|...|-+.+.+++.. -++..+.|.
T Consensus 206 lgPiiaAlFsGNaIVvK~SE~~~WS~~fy~e~ir~~L~a~g~~p~LVq~itclpd~a~~lt 266 (583)
T KOG2454|consen 206 LGPIIAALFSGNAIVVKVSEHASWSGCFYFEIIRAALAAVGAPPNLVQVITCLPDTAEALT 266 (583)
T ss_pred hhHHHHHHhcCCeEEEEeecceeeehhhHHHHHHHHHHHcCCCcchhheeecCcchHhHhh
Confidence 345677788889888766543334569999999999999998877666643 234444443
No 356
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=39.62 E-value=89 Score=26.62 Aligned_cols=65 Identities=14% Similarity=0.133 Sum_probs=43.2
Q ss_pred cCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCC----CHHHHHHHHHhcCCCCCcEEEeC-CeEeeccHH
Q 030914 73 ENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILE----DPELKSAVKAFSHWPTFPQIFIK-GEFIGGSDI 145 (169)
Q Consensus 73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~----~~~~~~~l~~~~g~~t~P~vfi~-g~~iGG~d~ 145 (169)
..+|+|.+.| .....|.++.+.|++.|++.+.+|+.. |.+.-..+.+.++ -.|.+. +...||+..
T Consensus 228 G~dvtIia~G----~~v~~Al~Aa~~L~~~GI~v~VId~~~ikPlD~~~l~~~~~~t~----~vvtvEE~~~~GGlGs 297 (356)
T PLN02683 228 GKDVTIVAFS----KMVGYALKAAEILAKEGISAEVINLRSIRPLDRDTINASVRKTN----RLVTVEEGWPQHGVGA 297 (356)
T ss_pred CCCEEEEEcc----HHHHHHHHHHHHHHhcCCCEEEEECCCCCccCHHHHHHHHhhcC----eEEEEeCCCcCCCHHH
Confidence 4578888877 367788899999999999999999965 4443333333332 235554 445577643
No 357
>PF10825 DUF2752: Protein of unknown function (DUF2752); InterPro: IPR021215 This family is conserved in bacteria. Many members are annotated as being putative membrane proteins.
Probab=39.11 E-value=25 Score=21.36 Aligned_cols=20 Identities=25% Similarity=0.376 Sum_probs=16.1
Q ss_pred ccCCCCCCCCcchHHHHHHHH
Q 030914 10 FKGIASYPSARSSRIVSGSLY 30 (169)
Q Consensus 10 ~kg~~~~p~cgfs~~~~~~l~ 30 (169)
+-|.| .|-||.+|.+..+++
T Consensus 7 ltG~~-CPgCG~tRa~~~ll~ 26 (52)
T PF10825_consen 7 LTGIP-CPGCGMTRAFIALLH 26 (52)
T ss_pred hhCCC-CCCCcHHHHHHHHHC
Confidence 34676 899999998887776
No 358
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=38.87 E-value=46 Score=25.68 Aligned_cols=53 Identities=17% Similarity=0.125 Sum_probs=30.1
Q ss_pred HHHHHHHhcCCCCeEEEE-cCCCHHHHHHH------HHhcCCCCCcEEEeCCeEeeccHH
Q 030914 93 SLAVRVLGAYNVPISARN-ILEDPELKSAV------KAFSHWPTFPQIFIKGEFIGGSDI 145 (169)
Q Consensus 93 ~~a~~~L~~~~v~~~~~d-i~~~~~~~~~l------~~~~g~~t~P~vfi~g~~iGG~d~ 145 (169)
....+++.+.|++-+.++ ...++.+++.+ .+..|-..+|.++|||+++=+...
T Consensus 124 ~~L~~~a~~~Gld~~~f~~~l~s~~~~~~v~~~~~~a~~~gI~gtPtfiInGky~v~~~~ 183 (207)
T PRK10954 124 ADIRDVFIKAGVKGEDYDAAWNSFVVKSLVAQQEKAAADLQLRGVPAMFVNGKYMVNNQG 183 (207)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcCCCCCCEEEECCEEEEcccc
Confidence 345566777777533221 11223333222 233477899999999998755443
No 359
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=38.33 E-value=94 Score=26.40 Aligned_cols=18 Identities=17% Similarity=0.412 Sum_probs=12.4
Q ss_pred eEEEeecCCCCCCCccHHHHHHH
Q 030914 76 VMLYMKGVPEFPQCGFSSLAVRV 98 (169)
Q Consensus 76 Vvly~k~~~~~~~C~~c~~a~~~ 98 (169)
++.|.. |+|++|+.....
T Consensus 166 lv~f~a-----Pwc~~ck~l~~~ 183 (383)
T KOG0191|consen 166 LVEFYA-----PWCGHCKKLAPE 183 (383)
T ss_pred EEEEec-----cccHHhhhcChH
Confidence 555544 899999977443
No 360
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=38.03 E-value=1.2e+02 Score=23.20 Aligned_cols=36 Identities=6% Similarity=-0.049 Sum_probs=19.3
Q ss_pred CCeEEEee-cCCCCCCCccHHHHHH-------HHhcCCCCeEEEEcCC
Q 030914 74 NPVMLYMK-GVPEFPQCGFSSLAVR-------VLGAYNVPISARNILE 113 (169)
Q Consensus 74 ~~Vvly~k-~~~~~~~C~~c~~a~~-------~L~~~~v~~~~~di~~ 113 (169)
+.|+||.- + .+||.|..-.. -|.+.|+.+--+..+.
T Consensus 32 k~vvL~F~P~----~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~ 75 (187)
T PRK10382 32 RWSVFFFYPA----DFTFVCPTELGDVADHYEELQKLGVDVYSVSTDT 75 (187)
T ss_pred CeEEEEEECC----CCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 35666543 3 47888886333 3344555554444443
No 361
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=37.85 E-value=42 Score=25.14 Aligned_cols=47 Identities=21% Similarity=0.350 Sum_probs=29.4
Q ss_pred CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCC--H-HHHHHHHHh
Q 030914 75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILED--P-ELKSAVKAF 124 (169)
Q Consensus 75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~--~-~~~~~l~~~ 124 (169)
+|.|.+-|+ ..=++++++...|+++|++|+..-+.-+ + .+.+.++++
T Consensus 2 ~V~Ii~gs~---SD~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~ 51 (150)
T PF00731_consen 2 KVAIIMGST---SDLPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEY 51 (150)
T ss_dssp EEEEEESSG---GGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHT
T ss_pred eEEEEeCCH---HHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHh
Confidence 466666655 3457899999999999999987655533 2 344444443
No 362
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=37.44 E-value=60 Score=29.58 Aligned_cols=75 Identities=20% Similarity=0.247 Sum_probs=48.7
Q ss_pred CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCC--HHHHHHH-HHh----------------------cCCCC
Q 030914 75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILED--PELKSAV-KAF----------------------SHWPT 129 (169)
Q Consensus 75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~--~~~~~~l-~~~----------------------~g~~t 129 (169)
.|.|.+-|+ ..=+.++++...|+++||+|+..=+..+ ++....+ +.. .+..+
T Consensus 412 ~v~i~~gs~---sd~~~~~~~~~~l~~~g~~~~~~v~sahr~~~~~~~~~~~~~~~~~~v~i~~ag~~~~l~~~~a~~t~ 488 (577)
T PLN02948 412 LVGIIMGSD---SDLPTMKDAAEILDSFGVPYEVTIVSAHRTPERMFSYARSAHSRGLQVIIAGAGGAAHLPGMVASMTP 488 (577)
T ss_pred eEEEEECch---hhHHHHHHHHHHHHHcCCCeEEEEECCccCHHHHHHHHHHHHHCCCCEEEEEcCccccchHHHhhccC
Confidence 377777766 3457899999999999999985444332 3322222 111 13467
Q ss_pred CcEEEe--CCeEeeccHHHHHHHhc
Q 030914 130 FPQIFI--KGEFIGGSDIILNMHQS 152 (169)
Q Consensus 130 ~P~vfi--~g~~iGG~d~l~~~~~~ 152 (169)
.|.|=+ ++...+|.|.|..+.+.
T Consensus 489 ~pvi~vp~~~~~~~g~~~l~s~~~~ 513 (577)
T PLN02948 489 LPVIGVPVKTSHLDGLDSLLSIVQM 513 (577)
T ss_pred CCEEEcCCCCCCCCcHHHHHHHhcC
Confidence 888743 44467899988887766
No 363
>PLN02790 transketolase
Probab=37.11 E-value=82 Score=29.14 Aligned_cols=86 Identities=8% Similarity=0.015 Sum_probs=49.9
Q ss_pred CCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCC----CHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHH---
Q 030914 74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILE----DPELKSAVKAFSHWPTFPQIFIKGEFIGGSDII--- 146 (169)
Q Consensus 74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~----~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l--- 146 (169)
.+|+|.+.| .....|.+|.+.|++.|+....+|+.. +.+......+..+...-+.|.|....++|+...
T Consensus 541 ~dv~iia~G----~~v~~Al~Aa~~L~~~gi~~~VV~~~~ikpld~~~~~y~~~~~~~~~~~vvtiE~~~~~G~~~~~~~ 616 (654)
T PLN02790 541 PDLILIGTG----SELEIAAKAAKELRKEGKKVRVVSMVCWELFEEQSDEYKESVLPSSVTARVSVEAGSTFGWEKYVGS 616 (654)
T ss_pred CCEEEEEcC----HHHHHHHHHHHHHHhcCCceEEEecCccchhhhhHHHHHHhhhccccceEEEecCccchhHHHhcCC
Confidence 467777766 356678899999999999999999864 222222122333333335566655555655432
Q ss_pred -------HHHHhcccHHHHHhccc
Q 030914 147 -------LNMHQSGELKEKLKGIA 163 (169)
Q Consensus 147 -------~~~~~~g~L~~~L~~~~ 163 (169)
...-.+|...++++..+
T Consensus 617 ~~~~igvd~Fg~sg~~~~l~~~~G 640 (654)
T PLN02790 617 KGKVIGVDRFGASAPAGILYKEFG 640 (654)
T ss_pred CceEEEeCCCcCcCCHHHHHHHhC
Confidence 12234555666665544
No 364
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=37.01 E-value=2.6e+02 Score=26.59 Aligned_cols=44 Identities=16% Similarity=0.201 Sum_probs=34.1
Q ss_pred hcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHH
Q 030914 72 KENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAV 121 (169)
Q Consensus 72 ~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l 121 (169)
...+|+||+.+ +-.+..+.++|...|++....+-..+...+..+
T Consensus 423 ~~~pvLIft~s------~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii 466 (762)
T TIGR03714 423 TGQPVLLITGS------VEMSEIYSELLLREGIPHNLLNAQNAAKEAQII 466 (762)
T ss_pred CCCCEEEEECc------HHHHHHHHHHHHHCCCCEEEecCCChHHHHHHH
Confidence 35689999983 778999999999999999887776665544433
No 365
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=36.89 E-value=92 Score=21.13 Aligned_cols=58 Identities=17% Similarity=0.133 Sum_probs=38.5
Q ss_pred eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCC---------HHHHHHHHHhcCCCCCcEEEeCCe
Q 030914 76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILED---------PELKSAVKAFSHWPTFPQIFIKGE 138 (169)
Q Consensus 76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~---------~~~~~~l~~~~g~~t~P~vfi~g~ 138 (169)
|+|++. |+|+=+.-++.+.+..++++..++.... ..+++.+.+.........||||+-
T Consensus 1 ill~G~-----~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~ 67 (132)
T PF00004_consen 1 ILLHGP-----PGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEI 67 (132)
T ss_dssp EEEESS-----TTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETG
T ss_pred CEEECc-----CCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccc
Confidence 456665 8999999999999999988877777531 123333433322223577888874
No 366
>PLN03194 putative disease resistance protein; Provisional
Probab=36.80 E-value=74 Score=24.79 Aligned_cols=66 Identities=11% Similarity=0.106 Sum_probs=37.4
Q ss_pred cchHHHHHHHHhCCCCcccccCCCccccCCCCCcccccCCcccHHHHHHHHhhcCC--eEEEeecCCCCCCCccHHHHHH
Q 030914 20 RSSRIVSGSLYHNGMKYSTDVPNDPDTHEDFRPTSKVDASGLSLKEVVEQDVKENP--VMLYMKGVPEFPQCGFSSLAVR 97 (169)
Q Consensus 20 gfs~~~~~~l~~~g~~~~s~vl~d~~~~~~~k~~s~~pt~~~~~~~~i~~~~~~~~--Vvly~k~~~~~~~C~~c~~a~~ 97 (169)
+|..-.++.|...|++.+.|.. +. ..++++...|.+.|...+ |+||+....+-+||- .+...
T Consensus 41 ~FvshL~~aL~~~GI~vF~D~~---el-----------~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCL--dEL~~ 104 (187)
T PLN03194 41 TIATLLYDHLSRLNLRPFLDNK---NM-----------KPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCL--HELAL 104 (187)
T ss_pred cHHHHHHHHHHHCCCEEEEcCc---cc-----------cCCCcHHHHHHHHHHhCeEEEEEECCCcccchhHH--HHHHH
Confidence 4556667777777766443211 11 134566677777787665 667877664444542 34444
Q ss_pred HHhc
Q 030914 98 VLGA 101 (169)
Q Consensus 98 ~L~~ 101 (169)
+++.
T Consensus 105 I~e~ 108 (187)
T PLN03194 105 IMES 108 (187)
T ss_pred HHHc
Confidence 5544
No 367
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=36.70 E-value=1.9e+02 Score=22.00 Aligned_cols=77 Identities=12% Similarity=0.032 Sum_probs=44.9
Q ss_pred ccHHHHHHHHhhcC---CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCC---CCc--E
Q 030914 61 LSLKEVVEQDVKEN---PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWP---TFP--Q 132 (169)
Q Consensus 61 ~~~~~~i~~~~~~~---~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~---t~P--~ 132 (169)
.++.+.++++-+.. .|+|++.+..+.+ -+.-.+|..+-+..||++-.+...+. ...+++.++.+.. +-| .
T Consensus 62 ~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~-d~~~~~a~~~~~~lgIpvl~h~~kKP-~~~~~i~~~~~~~~~~~~p~ei 139 (168)
T PF09419_consen 62 PEYAEWLNELKKQFGKDRVLIVSNSAGSSD-DPDGERAEALEKALGIPVLRHRAKKP-GCFREILKYFKCQKVVTSPSEI 139 (168)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEECCCCccc-CccHHHHHHHHHhhCCcEEEeCCCCC-ccHHHHHHHHhhccCCCCchhE
Confidence 35566666665443 5999987543323 35578899999999999766655443 2222333332221 123 5
Q ss_pred EEeCCeE
Q 030914 133 IFIKGEF 139 (169)
Q Consensus 133 vfi~g~~ 139 (169)
++||+++
T Consensus 140 avIGDrl 146 (168)
T PF09419_consen 140 AVIGDRL 146 (168)
T ss_pred EEEcchH
Confidence 6777764
No 368
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=36.63 E-value=2.2e+02 Score=22.81 Aligned_cols=92 Identities=9% Similarity=0.144 Sum_probs=55.5
Q ss_pred HHHHHHHHhhc-CCeEEEeec-CCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEe
Q 030914 63 LKEVVEQDVKE-NPVMLYMKG-VPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFI 140 (169)
Q Consensus 63 ~~~~i~~~~~~-~~Vvly~k~-~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~i 140 (169)
....+.+.++. .+=+.|.-. ..+..+-+|-.++++.|.++|+.+..+++...+. +.+..... ..=.|||+|
T Consensus 20 ~~~~i~n~l~g~~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~~~--~~Ie~~l~--~~d~IyVgG--- 92 (224)
T COG3340 20 FLPFIANFLQGKRKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLSKPPL--AAIENKLM--KADIIYVGG--- 92 (224)
T ss_pred hhHHHHHHhcCCCceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeeccCCCH--HHHHHhhh--hccEEEECC---
Confidence 45566665544 444455421 1234566789999999999999999999987543 22332221 123455554
Q ss_pred ec-cHHHHHHHhcccHHHHHhc
Q 030914 141 GG-SDIILNMHQSGELKEKLKG 161 (169)
Q Consensus 141 GG-~d~l~~~~~~g~L~~~L~~ 161 (169)
|. ++=|+.+.+.|.++-+.+.
T Consensus 93 GNTF~LL~~lke~gld~iIr~~ 114 (224)
T COG3340 93 GNTFNLLQELKETGLDDIIRER 114 (224)
T ss_pred chHHHHHHHHHHhCcHHHHHHH
Confidence 21 5667778877876555544
No 369
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=35.80 E-value=1.8e+02 Score=22.44 Aligned_cols=38 Identities=13% Similarity=0.129 Sum_probs=25.7
Q ss_pred hcCCeEEEeecCCCCCCCccHHHHHHHH---hcCCCCe------EEEEcCCC
Q 030914 72 KENPVMLYMKGVPEFPQCGFSSLAVRVL---GAYNVPI------SARNILED 114 (169)
Q Consensus 72 ~~~~Vvly~k~~~~~~~C~~c~~a~~~L---~~~~v~~------~~~di~~~ 114 (169)
..-.++-|..| ||+.|+.-.-+| ...|+++ .-+|++.+
T Consensus 59 GKV~lvn~~As-----wc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~ 105 (184)
T TIGR01626 59 GKVRVVHHIAG-----RTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDA 105 (184)
T ss_pred CCEEEEEEEec-----CCChhhccchHHHHHHHcCCCcccccceEEEECccc
Confidence 33356677774 899999755544 5567887 67787654
No 370
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=35.77 E-value=1.1e+02 Score=28.02 Aligned_cols=65 Identities=17% Similarity=0.236 Sum_probs=42.6
Q ss_pred HHHHHHhhcCC---eEE-EeecCCCCCCCccHHHHHHHHh--------cCCCCeEEEEcCC-CHHHHHHHHHhcCCCCCc
Q 030914 65 EVVEQDVKENP---VML-YMKGVPEFPQCGFSSLAVRVLG--------AYNVPISARNILE-DPELKSAVKAFSHWPTFP 131 (169)
Q Consensus 65 ~~i~~~~~~~~---Vvl-y~k~~~~~~~C~~c~~a~~~L~--------~~~v~~~~~di~~-~~~~~~~l~~~~g~~t~P 131 (169)
..++++..+++ |++ |+. +||--|+..++..- -.++-.-..|+.. |++.++.|+++ |.-.+|
T Consensus 463 ~~L~~~la~~~~~pVmlDfyA-----dWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~-~~~G~P 536 (569)
T COG4232 463 AELDQALAEAKAKPVMLDFYA-----DWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRL-GVFGVP 536 (569)
T ss_pred HHHHHHHHhCCCCcEEEeeeh-----hHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHc-CCCCCC
Confidence 36666665544 543 333 69999998777542 3345566778875 67788877765 577788
Q ss_pred EEEe
Q 030914 132 QIFI 135 (169)
Q Consensus 132 ~vfi 135 (169)
.+.+
T Consensus 537 ~~~f 540 (569)
T COG4232 537 TYLF 540 (569)
T ss_pred EEEE
Confidence 7743
No 371
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=35.43 E-value=1.6e+02 Score=24.91 Aligned_cols=84 Identities=8% Similarity=0.087 Sum_probs=58.6
Q ss_pred cHHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEc----------CCCHHHHHH---HHHhcCCC
Q 030914 62 SLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNI----------LEDPELKSA---VKAFSHWP 128 (169)
Q Consensus 62 ~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di----------~~~~~~~~~---l~~~~g~~ 128 (169)
.+.+.+.++++..-+.||+-. .+..+.-+..+.++.+||+..... ...|.+..+ +.+..+|+
T Consensus 51 ~~~~~~C~~~~~gV~AI~Gp~-----ss~~~~~v~~i~~~~~IP~I~~~~~~~~~~~f~i~~~p~~~~a~~~~i~~~~wk 125 (371)
T cd06388 51 AVTNAFCSQYSRGVFAIFGLY-----DKRSVHTLTSFCSALHISLITPSFPTEGESQFVLQLRPSLRGALLSLLDHYEWN 125 (371)
T ss_pred HHHHHHHHHHhCCceEEEecC-----CHHHHHHHHHHhhCCCCCeeecCccccCCCceEEEeChhhhhHHHHHHHhcCce
Confidence 567888899999989999873 466777788899999999764332 112333333 33446899
Q ss_pred CCcEEEeCCeEeeccHHHHHHH
Q 030914 129 TFPQIFIKGEFIGGSDIILNMH 150 (169)
Q Consensus 129 t~P~vfi~g~~iGG~d~l~~~~ 150 (169)
++=.||-.+.-.+..+.+.+..
T Consensus 126 ~vaiiYd~~~~~~~lq~l~~~~ 147 (371)
T cd06388 126 RFVFLYDTDRGYSILQAIMEKA 147 (371)
T ss_pred EEEEEecCCccHHHHHHHHHhh
Confidence 9999997676566666665543
No 372
>COG1911 RPL30 Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]
Probab=35.37 E-value=1.6e+02 Score=20.61 Aligned_cols=67 Identities=18% Similarity=0.215 Sum_probs=50.7
Q ss_pred cccHHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCe
Q 030914 60 GLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGE 138 (169)
Q Consensus 60 ~~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~ 138 (169)
..+++..|+.+++..+|++=.+ ++.+.+..-..+...+--...+++++.+.-+.--..+|.++..|.
T Consensus 4 ~~~v~~~L~~avkTGkvilG~k------------~tiK~lk~gkaKliiiAsN~P~~~k~~ieyYAkLs~ipV~~y~Gt 70 (100)
T COG1911 4 GDDVEKELKLAVKTGKVILGSK------------RTIKSLKLGKAKLIIIASNCPKELKEDIEYYAKLSDIPVYVYEGT 70 (100)
T ss_pred cchHHHHHHHHHhcCCEEEehH------------HHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHcCCcEEEecCC
Confidence 4578899999999999987666 577777766666655555556778888877765668999988875
No 373
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=35.26 E-value=1.4e+02 Score=26.42 Aligned_cols=26 Identities=8% Similarity=0.054 Sum_probs=21.9
Q ss_pred CCccHHHHHHHHhcCCCCeEEEEcCC
Q 030914 88 QCGFSSLAVRVLGAYNVPISARNILE 113 (169)
Q Consensus 88 ~C~~c~~a~~~L~~~~v~~~~~di~~ 113 (169)
.+..|.+|.+.|.+.||+.+.+|+..
T Consensus 351 ~v~~Al~Aa~~L~~~GI~~~VIdl~t 376 (464)
T PRK11892 351 GMTYALKAAEELAKEGIDAEVIDLRT 376 (464)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 44577888999999999999999964
No 374
>PRK13189 peroxiredoxin; Provisional
Probab=35.15 E-value=1.5e+02 Score=23.36 Aligned_cols=28 Identities=7% Similarity=-0.043 Sum_probs=15.4
Q ss_pred CCCccHHHHH-------HHHhcCCCCeEEEEcCCC
Q 030914 87 PQCGFSSLAV-------RVLGAYNVPISARNILED 114 (169)
Q Consensus 87 ~~C~~c~~a~-------~~L~~~~v~~~~~di~~~ 114 (169)
.+||.|..-. +-|++.|+.+.-+.++..
T Consensus 46 ~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~ 80 (222)
T PRK13189 46 DFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQV 80 (222)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCH
Confidence 4788887532 233445666555555543
No 375
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=35.07 E-value=2.8e+02 Score=23.47 Aligned_cols=85 Identities=12% Similarity=0.099 Sum_probs=50.2
Q ss_pred CcccHHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEE-E-----EcCCCHHHHHHHHHhcCCCCCcE
Q 030914 59 SGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISA-R-----NILEDPELKSAVKAFSHWPTFPQ 132 (169)
Q Consensus 59 ~~~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~-~-----di~~~~~~~~~l~~~~g~~t~P~ 132 (169)
++++.-+.+-+.++.+.|-+|.-+. ..-.-.+-+..|.+.|+.... - .+..|....-+..+..|-++.|.
T Consensus 50 ~~~~yv~~~l~~C~~~~Idv~~P~~----~~~~l~~~r~~F~a~Gv~l~~~~~~~~l~~~~dK~~~y~~~~~~~ipvp~~ 125 (329)
T PF15632_consen 50 DGEEYVDWCLDFCKEHGIDVFVPGR----NRELLAAHRDEFEALGVKLLTASSAETLELADDKAAFYEFMEANGIPVPPY 125 (329)
T ss_pred CHHHHHHHHHHHHHHhCCeEEEcCc----cHHHHHHHHHHHHHhCCEEEecCCHHHHHHHhhHHHHHHHHHhCCCCCCCE
Confidence 4556677777888999999887652 455566777788888987655 1 11122221112222345566665
Q ss_pred EEeCCeEeeccHHHHHHHhc
Q 030914 133 IFIKGEFIGGSDIILNMHQS 152 (169)
Q Consensus 133 vfi~g~~iGG~d~l~~~~~~ 152 (169)
..++ +.+++++++++
T Consensus 126 ~~v~-----t~~el~~a~~~ 140 (329)
T PF15632_consen 126 WRVR-----TADELKAAYEE 140 (329)
T ss_pred EEeC-----CHHHHHHHHHh
Confidence 5544 35666655443
No 376
>PRK13190 putative peroxiredoxin; Provisional
Probab=34.62 E-value=1.5e+02 Score=22.80 Aligned_cols=38 Identities=8% Similarity=0.020 Sum_probs=21.6
Q ss_pred cCCeEEE-eecCCCCCCCccHHHHHHHH-------hcCCCCeEEEEcCCC
Q 030914 73 ENPVMLY-MKGVPEFPQCGFSSLAVRVL-------GAYNVPISARNILED 114 (169)
Q Consensus 73 ~~~Vvly-~k~~~~~~~C~~c~~a~~~L-------~~~~v~~~~~di~~~ 114 (169)
...++|| .-+ .+||.|..-..-| .+.|+.+.-+.++..
T Consensus 27 gk~vvL~~~p~----~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~ 72 (202)
T PRK13190 27 GKWVLLFSHPA----DFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSI 72 (202)
T ss_pred CCEEEEEEEcC----CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCH
Confidence 3346664 333 4899998654433 345666655665543
No 377
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=34.36 E-value=38 Score=26.56 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=16.1
Q ss_pred cCCeEEEeecCCCCCCCccHHHHHHHHhc
Q 030914 73 ENPVMLYMKGVPEFPQCGFSSLAVRVLGA 101 (169)
Q Consensus 73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~~ 101 (169)
...|++|.. ..||||++...-+.+
T Consensus 85 ~v~v~~f~d-----~~Cp~C~~~~~~l~~ 108 (244)
T COG1651 85 PVTVVEFFD-----YTCPYCKEAFPELKK 108 (244)
T ss_pred CceEEEEec-----CcCccHHHHHHHHHH
Confidence 445777776 679999766665544
No 378
>PRK14812 hypothetical protein; Provisional
Probab=34.10 E-value=35 Score=24.57 Aligned_cols=18 Identities=39% Similarity=0.324 Sum_probs=16.1
Q ss_pred CCcchH-HHHHHHHhCCCC
Q 030914 18 SARSSR-IVSGSLYHNGMK 35 (169)
Q Consensus 18 ~cgfs~-~~~~~l~~~g~~ 35 (169)
+||-|| .++..|...|++
T Consensus 1 ~cGSSREhA~wAL~~~Gi~ 19 (119)
T PRK14812 1 MAGSSREHAAWALADYGFK 19 (119)
T ss_pred CCCCcHHHHHHHHHHcCCC
Confidence 699999 778899999986
No 379
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=33.81 E-value=82 Score=23.03 Aligned_cols=42 Identities=21% Similarity=0.180 Sum_probs=30.5
Q ss_pred HHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeE
Q 030914 65 EVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPIS 107 (169)
Q Consensus 65 ~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~ 107 (169)
..++..+. ..+.+++.||...+.-+--.++.++|+++|+++.
T Consensus 21 ~l~~~~~~-~~~~v~SAGt~~~~g~~~~~~a~~vl~e~Gid~~ 62 (139)
T COG0394 21 ALLRHLAP-DNVEVDSAGTGGHPGEPPDPRAVEVLAEHGIDIS 62 (139)
T ss_pred HHHHHhcc-CCeEEECCccCCCCCCCCCHHHHHHHHHcCCCcC
Confidence 33444444 7899999998545566667789999999998754
No 380
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=33.58 E-value=20 Score=28.81 Aligned_cols=26 Identities=12% Similarity=0.097 Sum_probs=15.4
Q ss_pred CCeEEEeecCCCCCCCccHHHHHHHHhcC
Q 030914 74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAY 102 (169)
Q Consensus 74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~ 102 (169)
.++.|+.-+. +-||||---++.|+..
T Consensus 4 ~~i~I~v~sD---~vCPwC~ig~~rL~ka 29 (225)
T COG2761 4 MKIEIDVFSD---VVCPWCYIGKRRLEKA 29 (225)
T ss_pred ceEEEEEEeC---CcCchhhcCHHHHHHH
Confidence 3444444443 7899998655555433
No 381
>PHA02558 uvsW UvsW helicase; Provisional
Probab=33.32 E-value=3e+02 Score=24.31 Aligned_cols=65 Identities=11% Similarity=-0.042 Sum_probs=42.0
Q ss_pred CCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEee-ccH
Q 030914 74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIG-GSD 144 (169)
Q Consensus 74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iG-G~d 144 (169)
.+++||... -.+|....+.|++.|++...+.=....+.|+.+.+.........+...+..+| |+|
T Consensus 345 ~~~lV~~~~------~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~D 410 (501)
T PHA02558 345 ENTFVMFKY------VEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGIS 410 (501)
T ss_pred CCEEEEEEE------HHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccc
Confidence 455555553 34899999999999988766655556666666655443344445555666666 665
No 382
>cd06387 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=32.73 E-value=1.5e+02 Score=25.28 Aligned_cols=84 Identities=13% Similarity=0.130 Sum_probs=56.6
Q ss_pred ccHHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEc----------CCCHHHHHHHH---HhcCC
Q 030914 61 LSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNI----------LEDPELKSAVK---AFSHW 127 (169)
Q Consensus 61 ~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di----------~~~~~~~~~l~---~~~g~ 127 (169)
-.+.+++.+++...-+.||+-+ .|.-..-+..+.....||+..... ...|.+..++. +..||
T Consensus 50 f~~~~~~C~l~~~GV~AIfGp~-----~~~s~~~v~s~c~~~~iP~i~~~~~~~~~~~~~l~l~P~l~~Ai~diI~~~~W 124 (372)
T cd06387 50 FSVTNAFCSQFSRGVYAIFGFY-----DQMSMNTLTSFCGALHTSFITPSFPTDADVQFVIQMRPALKGAILSLLAHYKW 124 (372)
T ss_pred HHHHHHHHHHhhcccEEEEecC-----CHhHHHHHHHhhccccCCeeeeCCCCCCCCceEEEEChhHHHHHHHHHHhcCC
Confidence 3577888999999999999874 355555556688888899865322 22455555444 34699
Q ss_pred CCCcEEEeCCeEeeccHHHHHH
Q 030914 128 PTFPQIFIKGEFIGGSDIILNM 149 (169)
Q Consensus 128 ~t~P~vfi~g~~iGG~d~l~~~ 149 (169)
+.+=.||-+...+++..++.++
T Consensus 125 r~~~~iYd~d~gl~~Lq~L~~~ 146 (372)
T cd06387 125 EKFVYLYDTERGFSILQAIMEA 146 (372)
T ss_pred CEEEEEecCchhHHHHHHHHHh
Confidence 9999999666655555555443
No 383
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=32.56 E-value=1.2e+02 Score=22.08 Aligned_cols=61 Identities=13% Similarity=0.267 Sum_probs=33.1
Q ss_pred HHHHHHHHhcCCCCeEEEEcCCC--HHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHHHhcccHHHHHhc
Q 030914 92 SSLAVRVLGAYNVPISARNILED--PELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLKG 161 (169)
Q Consensus 92 c~~a~~~L~~~~v~~~~~di~~~--~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~~~~g~L~~~L~~ 161 (169)
-.++.+.|.++|+.++.+++... .++.+.|. +.-.||+.| |.-..+....+.-.|.+.|+.
T Consensus 2 ~~~~~~~f~~~g~~v~~l~~~~~~~~~~~~~i~------~ad~I~~~G---G~~~~l~~~l~~t~l~~~i~~ 64 (154)
T PF03575_consen 2 VEKFRKAFRKLGFEVDQLDLSDRNDADILEAIR------EADAIFLGG---GDTFRLLRQLKETGLDEAIRE 64 (154)
T ss_dssp HHHHHHHHHHCT-EEEECCCTSCGHHHHHHHHH------HSSEEEE-----S-HHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEeccCCChHHHHHHHH------hCCEEEECC---CCHHHHHHHHHhCCHHHHHHH
Confidence 35788999999999888888763 23333343 345677765 222233333334445555543
No 384
>PRK13191 putative peroxiredoxin; Provisional
Probab=31.47 E-value=2.2e+02 Score=22.27 Aligned_cols=40 Identities=10% Similarity=0.072 Sum_probs=23.1
Q ss_pred hcCCeEEE-eecCCCCCCCccHHHHHHH-------HhcCCCCeEEEEcCCCH
Q 030914 72 KENPVMLY-MKGVPEFPQCGFSSLAVRV-------LGAYNVPISARNILEDP 115 (169)
Q Consensus 72 ~~~~Vvly-~k~~~~~~~C~~c~~a~~~-------L~~~~v~~~~~di~~~~ 115 (169)
+...++|| .-+ .+||.|..-... |.+.|+.+--+.++...
T Consensus 32 ~GK~vvLff~pa----~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~ 79 (215)
T PRK13191 32 KGRWFVLFSHPG----DFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNI 79 (215)
T ss_pred CCCcEEEEEeCC----CCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHH
Confidence 34456664 333 589999864433 34556666666665543
No 385
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=31.31 E-value=1.7e+02 Score=27.51 Aligned_cols=65 Identities=15% Similarity=0.065 Sum_probs=42.1
Q ss_pred cCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCC----CHHHHHHHHHhcCCCCCcEEEeCCeEeeccHH
Q 030914 73 ENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILE----DPELKSAVKAFSHWPTFPQIFIKGEFIGGSDI 145 (169)
Q Consensus 73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~----~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~ 145 (169)
..+|.|.+.| .....|.+|.+.|++.|+..+.+|+.. |.+.-.++.+. +=..|.+....+||+..
T Consensus 567 G~dvtIia~G----~mv~~Al~AA~~L~~~GI~vtVIdlr~ikPLD~e~I~~~~~k----~~~vVTvEE~~~GG~Gs 635 (701)
T PLN02225 567 GQDVALLGYG----AMVQNCLHAHSLLSKLGLNVTVADARFCKPLDIKLVRDLCQN----HKFLITVEEGCVGGFGS 635 (701)
T ss_pred CCCEEEEecc----HHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCHHHHHHHHhh----cCeEEEEcCCCCCchHH
Confidence 3456666655 245678899999999999999999864 45443333332 33456666555687644
No 386
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=31.30 E-value=37 Score=23.72 Aligned_cols=19 Identities=16% Similarity=0.230 Sum_probs=14.9
Q ss_pred CCCCCcEEEeCCeEeeccH
Q 030914 126 HWPTFPQIFIKGEFIGGSD 144 (169)
Q Consensus 126 g~~t~P~vfi~g~~iGG~d 144 (169)
+....=++||||.++|-+-
T Consensus 60 g~~~~~~vwVNG~~~G~~~ 78 (111)
T PF13364_consen 60 GNAFRASVWVNGWFLGSYW 78 (111)
T ss_dssp STTEEEEEEETTEEEEEEE
T ss_pred CCceEEEEEECCEEeeeec
Confidence 4555678999999999753
No 387
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=31.10 E-value=3.4e+02 Score=23.24 Aligned_cols=102 Identities=18% Similarity=0.205 Sum_probs=59.4
Q ss_pred HHHHHHHhCCCCcc------c-ccCCCccccCCCCCcccccC-----------CcccHHHHHHHHhhcCCeEEEeecCCC
Q 030914 24 IVSGSLYHNGMKYS------T-DVPNDPDTHEDFRPTSKVDA-----------SGLSLKEVVEQDVKENPVMLYMKGVPE 85 (169)
Q Consensus 24 ~~~~~l~~~g~~~~------s-~vl~d~~~~~~~k~~s~~pt-----------~~~~~~~~i~~~~~~~~Vvly~k~~~~ 85 (169)
.+++...+.|..+. + +......-...++-...|-. .+.+-...+.+.+.+..|+.|+.
T Consensus 34 ~lIdaAk~aGADavKfQt~~~~d~~t~~~~~~~~~i~~~~~~~slyel~e~~~~p~e~~~~Lke~a~~~Gi~~~SS---- 109 (347)
T COG2089 34 ELIDAAKEAGADAVKFQTFYTPDIMTLESKNVPFKIKTLWDKVSLYELYEEAETPLEWHAQLKEYARKRGIIFFSS---- 109 (347)
T ss_pred HHHHHHHHcCcceeeeecccccccccccccCCccccccccccccHHHHHHHhcCCHHHHHHHHHHHHHcCeEEEec----
Confidence 56777788887432 2 44443333333332233321 22344567788888888887765
Q ss_pred CCCCccHHHHHHHHhcCCCCeEEE---EcCCCHHHHHHHHHhcCCCCCcEEEeCCe
Q 030914 86 FPQCGFSSLAVRVLGAYNVPISAR---NILEDPELKSAVKAFSHWPTFPQIFIKGE 138 (169)
Q Consensus 86 ~~~C~~c~~a~~~L~~~~v~~~~~---di~~~~~~~~~l~~~~g~~t~P~vfi~g~ 138 (169)
||...+..+|++++++.=.+ ++. +..+-+.+.+ ..-|.|+--|.
T Consensus 110 ----Pfd~~svd~l~~~~~~ayKIaS~E~~-~~plik~iA~----~~kPiIlSTGm 156 (347)
T COG2089 110 ----PFDLTAVDLLESLNPPAYKIASGEIN-DLPLIKYIAK----KGKPIILSTGM 156 (347)
T ss_pred ----CCCHHHHHHHHhcCCCeEEecCcccc-ChHHHHHHHh----cCCCEEEEccc
Confidence 88999999999999884222 221 3333333322 23388877664
No 388
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=30.93 E-value=64 Score=19.94 Aligned_cols=43 Identities=12% Similarity=0.041 Sum_probs=22.6
Q ss_pred cHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCe
Q 030914 91 FSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGE 138 (169)
Q Consensus 91 ~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~ 138 (169)
-...++.+|++.||++...|-....- .-..|....+.|+|..+
T Consensus 11 ea~~i~~~L~~~gI~~~v~~~~~~~~-----~g~~g~~~~~~v~V~~~ 53 (67)
T PF09413_consen 11 EAELIKGLLEENGIPAFVKNEHMSGY-----AGEPGTGGQVEVYVPEE 53 (67)
T ss_dssp HHHHHHHHHHHTT--EE--S----SS--------S--SSSEEEEEEGG
T ss_pred HHHHHHHHHHhCCCcEEEECCccchh-----hcccCccCceEEEECHH
Confidence 46788899999999997776543222 11134555589998774
No 389
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=30.73 E-value=1.9e+02 Score=20.30 Aligned_cols=72 Identities=17% Similarity=0.273 Sum_probs=46.0
Q ss_pred cCCeEEEeecCCCCCCCccHHHHHHHH----hcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEE--EeCCeEeeccHHH
Q 030914 73 ENPVMLYMKGVPEFPQCGFSSLAVRVL----GAYNVPISARNILEDPELKSAVKAFSHWPTFPQI--FIKGEFIGGSDII 146 (169)
Q Consensus 73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L----~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~v--fi~g~~iGG~d~l 146 (169)
....++|..|.|. .+|-+..+--+| +..+-.+..--+. ++...+|....|...+|.+ |-+|+++|-...+
T Consensus 26 ~~~~vlf~~gDp~--r~~E~~DvaVILPEL~~af~~~~~~avv~--~~~e~~L~~r~gv~~~PaLvf~R~g~~lG~i~gi 101 (107)
T PF07449_consen 26 PGDAVLFFAGDPA--RFPETADVAVILPELVKAFPGRFRGAVVA--RAAERALAARFGVRRWPALVFFRDGRYLGAIEGI 101 (107)
T ss_dssp CSCEEEEESS-TT--TSTTCCHHHHHHHHHHCTSTTSEEEEEEE--HHHHHHHHHHHT-TSSSEEEEEETTEEEEEEESS
T ss_pred CCcEEEEECCCCC--cCcccccceeEcHHHHHhhhCccceEEEC--chhHHHHHHHhCCccCCeEEEEECCEEEEEecCe
Confidence 4567888888763 445555544444 4444444443343 6777889988899999987 5599999976554
Q ss_pred HH
Q 030914 147 LN 148 (169)
Q Consensus 147 ~~ 148 (169)
+.
T Consensus 102 ~d 103 (107)
T PF07449_consen 102 RD 103 (107)
T ss_dssp ST
T ss_pred ec
Confidence 43
No 390
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=30.19 E-value=1.5e+02 Score=19.00 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=27.8
Q ss_pred cHHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCC
Q 030914 62 SLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVP 105 (169)
Q Consensus 62 ~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~ 105 (169)
++.+.+..+-+..+|++|.. .+..+..+...|...|.+
T Consensus 45 ~~~~~~~~~~~~~~ivv~c~------~g~~s~~a~~~l~~~G~~ 82 (96)
T cd01444 45 SLDDWLGDLDRDRPVVVYCY------HGNSSAQLAQALREAGFT 82 (96)
T ss_pred HHHHHHhhcCCCCCEEEEeC------CCChHHHHHHHHHHcCCc
Confidence 34445555446678999987 467888999999999875
No 391
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=29.90 E-value=68 Score=25.08 Aligned_cols=24 Identities=13% Similarity=0.199 Sum_probs=18.7
Q ss_pred cCCCCCcEEEeCCeEeeccHHHHH
Q 030914 125 SHWPTFPQIFIKGEFIGGSDIILN 148 (169)
Q Consensus 125 ~g~~t~P~vfi~g~~iGG~d~l~~ 148 (169)
.|....|.+||+|..++|+-.+.+
T Consensus 211 ~gv~gTPt~~v~~~~~~g~~~~~~ 234 (244)
T COG1651 211 LGVNGTPTFIVNGKLVPGLPDLDE 234 (244)
T ss_pred cCCCcCCeEEECCeeecCCCCHHH
Confidence 477889999999998888654333
No 392
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=29.62 E-value=4.4e+02 Score=25.09 Aligned_cols=47 Identities=21% Similarity=0.228 Sum_probs=33.8
Q ss_pred hcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhc
Q 030914 72 KENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFS 125 (169)
Q Consensus 72 ~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~ 125 (169)
+..+|+||+.+ ...|..+-+.|.+.|++....+-.. .+...++.+..
T Consensus 404 ~grpvLV~t~s------i~~se~ls~~L~~~gi~~~~Lna~q-~~rEa~ii~~a 450 (745)
T TIGR00963 404 KGQPVLVGTTS------VEKSELLSNLLKERGIPHNVLNAKN-HEREAEIIAQA 450 (745)
T ss_pred cCCCEEEEeCc------HHHHHHHHHHHHHcCCCeEEeeCCh-HHHHHHHHHhc
Confidence 45789999984 5678999999999999988776652 23333454443
No 393
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=29.17 E-value=1.6e+02 Score=24.84 Aligned_cols=48 Identities=19% Similarity=0.212 Sum_probs=27.4
Q ss_pred CCccHHHHHHHHhcC-----CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCC
Q 030914 88 QCGFSSLAVRVLGAY-----NVPISARNILEDPELKSAVKAFSHWPTFPQIFIKG 137 (169)
Q Consensus 88 ~C~~c~~a~~~L~~~-----~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g 137 (169)
+|+.|++++-+|+.. .+.|.-+||.. +.++.....+. ...+|.|-|.|
T Consensus 84 GsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~-~~L~~a~~~L~-~~~~p~l~v~~ 136 (319)
T TIGR03439 84 GSGNLRKVGILLEALERQKKSVDYYALDVSR-SELQRTLAELP-LGNFSHVRCAG 136 (319)
T ss_pred CCCchHHHHHHHHHHHhcCCCceEEEEECCH-HHHHHHHHhhh-hccCCCeEEEE
Confidence 599999999888765 24577777753 22333333332 13345554443
No 394
>PTZ00110 helicase; Provisional
Probab=29.16 E-value=2.9e+02 Score=24.87 Aligned_cols=54 Identities=9% Similarity=0.082 Sum_probs=37.0
Q ss_pred HHHHHHHh-hcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHH
Q 030914 64 KEVVEQDV-KENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKA 123 (169)
Q Consensus 64 ~~~i~~~~-~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~ 123 (169)
.+.++.+. ...+++||..+ ...|..+.+.|...+++...+.=....+.|+++.+
T Consensus 367 ~~ll~~~~~~~~k~LIF~~t------~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~ 421 (545)
T PTZ00110 367 KMLLQRIMRDGDKILIFVET------KKGADFLTKELRLDGWPALCIHGDKKQEERTWVLN 421 (545)
T ss_pred HHHHHHhcccCCeEEEEecC------hHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHH
Confidence 34444444 45689999873 56788999999988888766655566666665443
No 395
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=29.12 E-value=4.1e+02 Score=26.30 Aligned_cols=48 Identities=19% Similarity=0.178 Sum_probs=34.4
Q ss_pred hcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcC
Q 030914 72 KENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSH 126 (169)
Q Consensus 72 ~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g 126 (169)
...+|+||+.+ +--|..+-++|...|++....+-. ..+-...+.+..|
T Consensus 597 ~grpVLIft~S------ve~sE~Ls~~L~~~gI~h~vLnak-q~~REa~Iia~AG 644 (1025)
T PRK12900 597 KGQPVLVGTAS------VEVSETLSRMLRAKRIAHNVLNAK-QHDREAEIVAEAG 644 (1025)
T ss_pred CCCCEEEEeCc------HHHHHHHHHHHHHcCCCceeecCC-HHHhHHHHHHhcC
Confidence 45689999984 778999999999999999888753 2222334544443
No 396
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=29.12 E-value=1.9e+02 Score=21.35 Aligned_cols=45 Identities=13% Similarity=0.000 Sum_probs=22.2
Q ss_pred cCCeEEEeecCCCCCC-CccHHHHHHHHhc-----CCCCeEEEEcCCCHHHHHHH
Q 030914 73 ENPVMLYMKGVPEFPQ-CGFSSLAVRVLGA-----YNVPISARNILEDPELKSAV 121 (169)
Q Consensus 73 ~~~Vvly~k~~~~~~~-C~~c~~a~~~L~~-----~~v~~~~~di~~~~~~~~~l 121 (169)
.+.++|+.-. .+ ||.|.+-..-|.+ .++.+.-+.++.....++.+
T Consensus 44 Gk~vvl~f~~----s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~~~~~~~f~ 94 (167)
T PRK00522 44 GKRKVLNIFP----SIDTGVCATSVRKFNQEAAELDNTVVLCISADLPFAQKRFC 94 (167)
T ss_pred CCEEEEEEEc----CCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCCHHHHHHHH
Confidence 3455555543 25 8999875544432 24444444444333343333
No 397
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=28.68 E-value=1.1e+02 Score=22.25 Aligned_cols=41 Identities=15% Similarity=0.169 Sum_probs=30.1
Q ss_pred HHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCe
Q 030914 64 KEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPI 106 (169)
Q Consensus 64 ~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~ 106 (169)
+..++.... .+.+++.|+...+++|-..++.++|+++|++.
T Consensus 20 Ea~~~~~~~--~~~v~SaG~~~~~g~~~~~~a~~~l~~~Gid~ 60 (144)
T PRK11391 20 ERLLRKRLP--GVKVKSAGVHGLVKHPADATAADVAANHGVSL 60 (144)
T ss_pred HHHHHHhcC--CeEEEcccccCCCCCCCCHHHHHHHHHcCCCc
Confidence 334444433 48889999864467888899999999999874
No 398
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=28.05 E-value=2.4e+02 Score=22.32 Aligned_cols=78 Identities=22% Similarity=0.368 Sum_probs=49.4
Q ss_pred HHHHHHHHhhcCCeEE-EeecCCCCCCCccHHHHHHHHhcCCCC--eEEEEcCCCHHHHHHHHHhcCCCCCcEE--EeCC
Q 030914 63 LKEVVEQDVKENPVML-YMKGVPEFPQCGFSSLAVRVLGAYNVP--ISARNILEDPELKSAVKAFSHWPTFPQI--FIKG 137 (169)
Q Consensus 63 ~~~~i~~~~~~~~Vvl-y~k~~~~~~~C~~c~~a~~~L~~~~v~--~~~~di~~~~~~~~~l~~~~g~~t~P~v--fi~g 137 (169)
=.+.++...++.+||+ |.. |+.-.|..=.+=.++|...-+. |..+|....|-+ ....+-..+|.| |.||
T Consensus 74 Ekdf~~~~~kS~kVVcHFY~--~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~PFl----v~kL~IkVLP~v~l~k~g 147 (211)
T KOG1672|consen 74 EKDFFEEVKKSEKVVCHFYR--PEFFRCKIMDKHLEILAKRHVETRFIKVNAEKAPFL----VTKLNIKVLPTVALFKNG 147 (211)
T ss_pred HHHHHHHhhcCceEEEEEEc--CCCcceehHHHHHHHHHHhcccceEEEEecccCcee----eeeeeeeEeeeEEEEEcC
Confidence 4567777777777664 444 2234577666767777766554 666676655553 344466789987 7788
Q ss_pred e---EeeccHHH
Q 030914 138 E---FIGGSDII 146 (169)
Q Consensus 138 ~---~iGG~d~l 146 (169)
. +|-|+++|
T Consensus 148 ~~~D~iVGF~dL 159 (211)
T KOG1672|consen 148 KTVDYVVGFTDL 159 (211)
T ss_pred EEEEEEeeHhhc
Confidence 6 55566654
No 399
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=28.03 E-value=2.5e+02 Score=20.80 Aligned_cols=51 Identities=8% Similarity=0.071 Sum_probs=34.3
Q ss_pred eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCC
Q 030914 76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWP 128 (169)
Q Consensus 76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~ 128 (169)
|++++-|.+.....+.+..+.+.+++.||..-.+-+ . ..-+.+|+.+++.+
T Consensus 107 villTDG~~~~~~~~~~~~~a~~l~~~gv~i~~vgv-~-~~~~~~L~~iA~~~ 157 (185)
T cd01474 107 IIALTDGQLLLNGHKYPEHEAKLSRKLGAIVYCVGV-T-DFLKSQLINIADSK 157 (185)
T ss_pred EEEEcCCCcCCCCCcchHHHHHHHHHcCCEEEEEee-c-hhhHHHHHHHhCCC
Confidence 677787765323345667777788889998777776 2 23356788887755
No 400
>COG3917 NahD 2-hydroxychromene-2-carboxylate isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=27.82 E-value=1.3e+02 Score=23.54 Aligned_cols=36 Identities=22% Similarity=0.339 Sum_probs=27.4
Q ss_pred CHHHHHHHHHhc------CCCCCcEEEeCCeEeeccHHHHHH
Q 030914 114 DPELKSAVKAFS------HWPTFPQIFIKGEFIGGSDIILNM 149 (169)
Q Consensus 114 ~~~~~~~l~~~~------g~~t~P~vfi~g~~iGG~d~l~~~ 149 (169)
+++++++++.-+ |.-..|.+|++++..-|.|.+-.+
T Consensus 155 d~eik~~l~a~~~~a~srGvfGaPtfivg~q~fwGqDRL~~l 196 (203)
T COG3917 155 DDEIKARLKANTAEAVSRGVFGAPTFIVGDQLFWGQDRLYQL 196 (203)
T ss_pred CHHHHHHHHhhHHHHHhcCccCCCeEEECCeeeechhHHHHH
Confidence 678888876532 555678899999999999977554
No 401
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=27.72 E-value=1.4e+02 Score=20.17 Aligned_cols=27 Identities=19% Similarity=0.143 Sum_probs=18.9
Q ss_pred HHHHHHhcCCCCCcEEEeCCeEeeccH
Q 030914 118 KSAVKAFSHWPTFPQIFIKGEFIGGSD 144 (169)
Q Consensus 118 ~~~l~~~~g~~t~P~vfi~g~~iGG~d 144 (169)
.+.+++......+|...|+.+..|-.|
T Consensus 64 ~~~i~~~~~~~~ipv~~I~~~~Y~~md 90 (95)
T TIGR00853 64 LPDLKKETDKKGIPVEVINGAQYGKLT 90 (95)
T ss_pred HHHHHHHhhhcCCCEEEeChhhcccCC
Confidence 344555556667899999988777554
No 402
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=27.70 E-value=1.9e+02 Score=19.36 Aligned_cols=22 Identities=23% Similarity=0.182 Sum_probs=9.9
Q ss_pred HHHHHHHHHhcCCCCCcEEEeC
Q 030914 115 PELKSAVKAFSHWPTFPQIFIK 136 (169)
Q Consensus 115 ~~~~~~l~~~~g~~t~P~vfi~ 136 (169)
+.+-..+........+|.+|++
T Consensus 41 ~~vv~~l~~lceek~Ip~v~V~ 62 (84)
T PRK13600 41 VYLMTRVLSQINQKNIPVSFFK 62 (84)
T ss_pred HHHHHHHHHHHHHcCCCEEEEC
Confidence 3333444444444455555554
No 403
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=27.50 E-value=2.1e+02 Score=26.42 Aligned_cols=50 Identities=10% Similarity=0.015 Sum_probs=34.2
Q ss_pred HHHHHHHHhh-cCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHH
Q 030914 63 LKEVVEQDVK-ENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELK 118 (169)
Q Consensus 63 ~~~~i~~~~~-~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~ 118 (169)
+.+.|.+.++ ..+|+||+. ....+.++.++|.+.|++...+.=..+...|
T Consensus 435 L~~~L~~~~~~g~~viIf~~------t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R 485 (652)
T PRK05298 435 LLSEIRKRVAKGERVLVTTL------TKRMAEDLTDYLKELGIKVRYLHSDIDTLER 485 (652)
T ss_pred HHHHHHHHHhCCCEEEEEeC------CHHHHHHHHHHHhhcceeEEEEECCCCHHHH
Confidence 4445555554 467999987 3678999999999999987666444444333
No 404
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=27.39 E-value=38 Score=25.23 Aligned_cols=21 Identities=19% Similarity=0.486 Sum_probs=15.0
Q ss_pred CeEEEeecCCCCCCCccHHHHHHHHh
Q 030914 75 PVMLYMKGVPEFPQCGFSSLAVRVLG 100 (169)
Q Consensus 75 ~Vvly~k~~~~~~~C~~c~~a~~~L~ 100 (169)
+|.+|.- +.||+|..+...|+
T Consensus 2 ~i~~~~D-----~~cp~c~~~~~~l~ 22 (193)
T cd03025 2 ELYYFID-----PLCGWCYGFEPLLE 22 (193)
T ss_pred eEEEEEC-----CCCchhhCchHHHH
Confidence 3667776 78999986665553
No 405
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=27.22 E-value=1.1e+02 Score=26.66 Aligned_cols=46 Identities=17% Similarity=0.260 Sum_probs=29.1
Q ss_pred HHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCC-CC--CcEEEeCCe
Q 030914 93 SLAVRVLGAYNVPISARNILEDPELKSAVKAFSHW-PT--FPQIFIKGE 138 (169)
Q Consensus 93 ~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~-~t--~P~vfi~g~ 138 (169)
.+++++|.++|||.-.-.+...++-..++.+..|| +. =+||-++|+
T Consensus 6 YqaKelf~~~GiPvp~g~v~~s~eea~~~a~~lg~~~~VvKaQV~aGGR 54 (387)
T COG0045 6 YQAKELFAKYGIPVPPGYVATSPEEAEEAAKELGGGPVVVKAQVHAGGR 54 (387)
T ss_pred HHHHHHHHHcCCCCCCceeeeCHHHHHHHHHHhCCCcEEEEeeeeecCc
Confidence 47899999999997655554445444444433343 22 277888776
No 406
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=27.16 E-value=2.8e+02 Score=21.04 Aligned_cols=59 Identities=12% Similarity=0.073 Sum_probs=40.7
Q ss_pred eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCC----CCcEEEeC
Q 030914 76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWP----TFPQIFIK 136 (169)
Q Consensus 76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~----t~P~vfi~ 136 (169)
++|++-|..+.+....+.++.+.|++.||..-.+=|... ...+|+.++|.+ .-|.+|.-
T Consensus 112 ~IllTDG~s~~~~~~~~~~~a~~lk~~gV~i~~vGiG~~--~~~el~~ia~~~~~~~~~~~~~~~ 174 (192)
T cd01473 112 TMLFTDGNDTSASKKELQDISLLYKEENVKLLVVGVGAA--SENKLKLLAGCDINNDNCPNVIKT 174 (192)
T ss_pred EEEEecCCCCCcchhhHHHHHHHHHHCCCEEEEEEeccc--cHHHHHHhcCCCCCCCCCCeEEec
Confidence 667777754433445577888899999999888877643 356788888764 34566554
No 407
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=26.79 E-value=2.6e+02 Score=20.59 Aligned_cols=42 Identities=19% Similarity=0.108 Sum_probs=27.8
Q ss_pred HHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCc-EEEeC--Ce
Q 030914 93 SLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFP-QIFIK--GE 138 (169)
Q Consensus 93 ~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P-~vfi~--g~ 138 (169)
..+++++++++++|..+..+.+.++.. ..+...+| .++|| |+
T Consensus 105 ~~~~~~~~~~~~~f~~v~~D~~~~~~~----~~~v~~~P~~~~id~~G~ 149 (173)
T TIGR00385 105 QNALKFLKELGNPYQAILIDPNGKLGL----DLGVYGAPETFLVDGNGV 149 (173)
T ss_pred HHHHHHHHHcCCCCceEEECCCCchHH----hcCCeeCCeEEEEcCCce
Confidence 456789999999987665555544333 33567789 56774 65
No 408
>PRK10126 tyrosine phosphatase; Provisional
Probab=26.79 E-value=1.3e+02 Score=21.79 Aligned_cols=40 Identities=10% Similarity=0.149 Sum_probs=29.5
Q ss_pred HHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCe
Q 030914 65 EVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPI 106 (169)
Q Consensus 65 ~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~ 106 (169)
..++.... .+.+++.|+...++-|-..++.++|+++|++.
T Consensus 21 a~~~~~~~--~~~v~SAG~~~~~g~~~~~~a~~~l~~~Gid~ 60 (147)
T PRK10126 21 RLLQRYHP--ELKVESAGLGALVGKGADPTAISVAAEHQLSL 60 (147)
T ss_pred HHHHHhcC--CeEEEeeeccCCCCCCCCHHHHHHHHHcCCCc
Confidence 34444442 48889999854467778889999999999864
No 409
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=26.73 E-value=1.8e+02 Score=19.61 Aligned_cols=31 Identities=16% Similarity=0.094 Sum_probs=21.3
Q ss_pred CHHHHHHH---HHhcCCCCCcEEEeCCeEeeccH
Q 030914 114 DPELKSAV---KAFSHWPTFPQIFIKGEFIGGSD 144 (169)
Q Consensus 114 ~~~~~~~l---~~~~g~~t~P~vfi~g~~iGG~d 144 (169)
.|+++..+ ++......+|...|+....|-.|
T Consensus 53 ~Pqv~~~~~~i~~~~~~~~~pv~~I~~~~Y~~~d 86 (96)
T cd05564 53 GPQVRYMLDEVKKKAAEYGIPVAVIDMMDYGMMN 86 (96)
T ss_pred ChhHHHHHHHHHHHhccCCCcEEEcChHhcccCC
Confidence 45655544 44456789999999998777443
No 410
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=26.60 E-value=1.7e+02 Score=26.99 Aligned_cols=64 Identities=16% Similarity=0.099 Sum_probs=40.3
Q ss_pred CCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCC----CHHHHHHHHHhcCCCCCcEEEeCCeEeeccHH
Q 030914 74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILE----DPELKSAVKAFSHWPTFPQIFIKGEFIGGSDI 145 (169)
Q Consensus 74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~----~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~ 145 (169)
..++|.+.| .....|.+|.+.|++.|++.+.+|+.. |.+....+.+ .....+.......||+..
T Consensus 505 ~ditIva~G----~~v~~aleAa~~L~~~Gi~v~VId~~~lkPlD~~~i~sv~k----~~~vvvveE~~~~gG~g~ 572 (641)
T PRK12571 505 PDVAILSVG----AHLHECLDAADLLEAEGISVTVADPRFVKPLDEALTDLLVR----HHIVVIVEEQGAMGGFGA 572 (641)
T ss_pred CCEEEEEec----HHHHHHHHHHHHHHhcCCCEEEEEcCcCCCcCHHHHHHHhh----hCCEEEEECCCCCCCHHH
Confidence 345555544 244567888999999999999999964 4443333322 224566666666688754
No 411
>KOG2733 consensus Uncharacterized membrane protein [Function unknown]
Probab=26.14 E-value=3.5e+02 Score=23.65 Aligned_cols=82 Identities=16% Similarity=0.275 Sum_probs=61.3
Q ss_pred HHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHh---------------cCCC
Q 030914 64 KEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAF---------------SHWP 128 (169)
Q Consensus 64 ~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~---------------~g~~ 128 (169)
++.+.++.++.+|++=.-| |+--|=..+++..-+.|-.+ +||.-.|+.-+.+... .||.
T Consensus 74 ~~Sl~emak~~~vivN~vG----PyR~hGE~VVkacienG~~~--vDISGEP~f~E~mq~kYhd~A~ekGVYIVsaCGfD 147 (423)
T KOG2733|consen 74 EASLDEMAKQARVIVNCVG----PYRFHGEPVVKACIENGTHH--VDISGEPQFMERMQLKYHDLAKEKGVYIVSACGFD 147 (423)
T ss_pred HHHHHHHHhhhEEEEeccc----cceecCcHHHHHHHHcCCce--eccCCCHHHHHHHHHHHHHHHHhcCeEEEeecccC
Confidence 6778899999999998877 77777888888888888754 7998888766655322 3788
Q ss_pred CCc----EEEeCCeEeecc---HHHHHHHh
Q 030914 129 TFP----QIFIKGEFIGGS---DIILNMHQ 151 (169)
Q Consensus 129 t~P----~vfi~g~~iGG~---d~l~~~~~ 151 (169)
++| .+|...++.|-. +...++|-
T Consensus 148 SIPaDlGv~f~~k~fdg~ln~VEsfl~Lh~ 177 (423)
T KOG2733|consen 148 SIPADLGVMFLRKNFDGVLNHVESFLQLHS 177 (423)
T ss_pred CCCccceeeeehhhccccHHHHHHHHhhhc
Confidence 888 578888888855 33445554
No 412
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=25.88 E-value=3.5e+02 Score=21.64 Aligned_cols=88 Identities=10% Similarity=0.162 Sum_probs=49.3
Q ss_pred HHHHHHHHhhcCCeEEEeecCCC-CCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEee
Q 030914 63 LKEVVEQDVKENPVMLYMKGVPE-FPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIG 141 (169)
Q Consensus 63 ~~~~i~~~~~~~~Vvly~k~~~~-~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iG 141 (169)
....+.+.+..++-++|.-.-.. ..+=.+..++++.|.++|+....+++..+ ..+.|. ..=.|||.| |
T Consensus 20 ~~~~~~~~~~~~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~d--~~~~l~------~ad~I~v~G---G 88 (233)
T PRK05282 20 ALPLIAELLAGRRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVAD--PVAAIE------NAEAIFVGG---G 88 (233)
T ss_pred HHHHHHHHHcCCCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccchh--hHHHHh------cCCEEEECC---c
Confidence 45566666666676777643211 23345788999999999998777776532 233332 222566655 2
Q ss_pred ccHHHHHHHhcccHHHHHhc
Q 030914 142 GSDIILNMHQSGELKEKLKG 161 (169)
Q Consensus 142 G~d~l~~~~~~g~L~~~L~~ 161 (169)
..-.+.+..+.-.|.+.|++
T Consensus 89 nt~~l~~~l~~~gl~~~l~~ 108 (233)
T PRK05282 89 NTFQLLKQLYERGLLAPIRE 108 (233)
T ss_pred cHHHHHHHHHHCCcHHHHHH
Confidence 23333333333345555543
No 413
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=25.36 E-value=1.5e+02 Score=21.04 Aligned_cols=42 Identities=19% Similarity=0.225 Sum_probs=30.6
Q ss_pred HHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCe
Q 030914 64 KEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPI 106 (169)
Q Consensus 64 ~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~ 106 (169)
+..++... ...+.+++.|+-..+.-+--.++.++|+++|++.
T Consensus 16 Ea~~~~~~-~~~~~v~SAG~~~~~g~~~~~~a~~~l~~~Gid~ 57 (140)
T smart00226 16 EALFKAIV-GDRVKIDSAGTGAWVGGGADPRAVEVLKEHGIAL 57 (140)
T ss_pred HHHHHHhc-CCCEEEEcCcccCCCCCCCCHHHHHHHHHcCcCc
Confidence 34444444 3468899999864467778889999999999864
No 414
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=25.18 E-value=52 Score=20.55 Aligned_cols=11 Identities=27% Similarity=1.087 Sum_probs=9.7
Q ss_pred EEEeCCeEeec
Q 030914 132 QIFIKGEFIGG 142 (169)
Q Consensus 132 ~vfi~g~~iGG 142 (169)
.|||||+++|-
T Consensus 14 ~V~vdg~~~G~ 24 (71)
T PF08308_consen 14 EVYVDGKYIGT 24 (71)
T ss_pred EEEECCEEecc
Confidence 68999999994
No 415
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=24.90 E-value=85 Score=23.41 Aligned_cols=29 Identities=28% Similarity=0.434 Sum_probs=24.5
Q ss_pred hcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCC
Q 030914 72 KENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVP 105 (169)
Q Consensus 72 ~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~ 105 (169)
+..+||+|.. .+|..+..+..+|...|.+
T Consensus 115 ~d~~IVvYC~-----~G~~~S~~aa~~L~~~G~~ 143 (162)
T TIGR03865 115 KDRPLVFYCL-----ADCWMSWNAAKRALAYGYS 143 (162)
T ss_pred CCCEEEEEEC-----CCCHHHHHHHHHHHhcCCc
Confidence 4578999988 4798999999999999865
No 416
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=24.89 E-value=55 Score=22.93 Aligned_cols=16 Identities=31% Similarity=0.775 Sum_probs=13.2
Q ss_pred CCCcEEEeCCeEeecc
Q 030914 128 PTFPQIFIKGEFIGGS 143 (169)
Q Consensus 128 ~t~P~vfi~g~~iGG~ 143 (169)
..-|.|||||++||..
T Consensus 40 ~~~~~v~vdg~~ig~l 55 (117)
T PF11008_consen 40 AVKPDVYVDGELIGEL 55 (117)
T ss_pred cccceEEECCEEEEEe
Confidence 4568999999999864
No 417
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=24.79 E-value=1.3e+02 Score=20.94 Aligned_cols=36 Identities=14% Similarity=0.033 Sum_probs=25.6
Q ss_pred cCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEc
Q 030914 73 ENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNI 111 (169)
Q Consensus 73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di 111 (169)
...|+|+..|.... .....+++.|.++|+.++.-|-
T Consensus 52 ~peiliiGTG~~~~---~~~~~~~~~l~~~gi~vE~m~T 87 (109)
T cd05560 52 QPEVILLGTGERQR---FPPPALLAPLLARGIGVEVMDT 87 (109)
T ss_pred CCCEEEEecCCCCC---cCCHHHHHHHHHcCCeEEEECH
Confidence 35688888775321 2257888899999998877665
No 418
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=24.76 E-value=2.6e+02 Score=21.82 Aligned_cols=85 Identities=6% Similarity=-0.044 Sum_probs=45.7
Q ss_pred CCCCcchHHHHHHHHhCCCCccc-ccCCCccccCCCCCcccccCCcccHHHHHHHHhhcCCeEEEeecCCCCCCCccHHH
Q 030914 16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKVDASGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSL 94 (169)
Q Consensus 16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~~~~~k~~s~~pt~~~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~ 94 (169)
.|.-.++..+.+++.++|..+.. ++...+...+. ......+.+.+.+-+....|+|.--+.+. .-..=.+
T Consensus 135 ~P~G~~~~~~~~~l~~~Gy~~v~w~v~~~Dw~~~~-------~~~~~~~~~~v~~~~~~g~IiLlHd~~~~--t~~aL~~ 205 (224)
T TIGR02884 135 PPRGVFSERTLAYTKELGYYTVFWSLAFKDWKVDE-------QPGWQYAYKQIMKKIHPGAILLLHAVSKD--NAEALDK 205 (224)
T ss_pred CCCCCcCHHHHHHHHHcCCcEEeccccCcccCCCC-------CCCHHHHHHHHHhcCCCCcEEEEECCCCC--HHHHHHH
Confidence 47766788999999999998755 55322111100 00112223333333455667777543211 1112335
Q ss_pred HHHHHhcCCCCeEEE
Q 030914 95 AVRVLGAYNVPISAR 109 (169)
Q Consensus 95 a~~~L~~~~v~~~~~ 109 (169)
+...|++.|..|..+
T Consensus 206 ii~~lk~~Gy~fvtl 220 (224)
T TIGR02884 206 IIKDLKEQGYTFKSL 220 (224)
T ss_pred HHHHHHHCCCEEEEh
Confidence 566777888777554
No 419
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=24.40 E-value=2.1e+02 Score=24.02 Aligned_cols=83 Identities=11% Similarity=0.189 Sum_probs=55.7
Q ss_pred cHHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcC----------CCHHHHHH---HHHhcCCC
Q 030914 62 SLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNIL----------EDPELKSA---VKAFSHWP 128 (169)
Q Consensus 62 ~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~----------~~~~~~~~---l~~~~g~~ 128 (169)
.+.+.+.++++..-+.||+-. .+.-+.-+..+.+..+||+...... ..|....+ +.+..+|+
T Consensus 45 ~~~~~~C~~~~~GV~AI~Gp~-----ss~~~~~v~~i~~~~~IP~I~~~~~~~~~~~f~~~~~p~~~~ai~d~i~~~~wk 119 (370)
T cd06389 45 AVTNAFCSQFSRGVYAIFGFY-----DKKSVNTITSFCGTLHVSFITPSFPTDGTHPFVIQMRPDLKGALLSLIEYYQWD 119 (370)
T ss_pred HHHHHHHHHhhcCcEEEEecC-----CHHHHHHHHHhhccCCCCeeeecCCCCCCCceEEEecchhhhHHHHHHHhcCCc
Confidence 567888999999989999863 4566777777889999998653221 12333332 23445999
Q ss_pred CCcEEEeCCeEeeccHHHHHH
Q 030914 129 TFPQIFIKGEFIGGSDIILNM 149 (169)
Q Consensus 129 t~P~vfi~g~~iGG~d~l~~~ 149 (169)
++=.||-+..-.+..+.+.+.
T Consensus 120 ~vailYdsd~gl~~lq~l~~~ 140 (370)
T cd06389 120 KFAYLYDSDRGLSTLQAVLDS 140 (370)
T ss_pred EEEEEecCchHHHHHHHHHHh
Confidence 999999765444455555554
No 420
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=24.21 E-value=3.8e+02 Score=23.37 Aligned_cols=46 Identities=13% Similarity=0.074 Sum_probs=33.6
Q ss_pred hcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHH
Q 030914 72 KENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKA 123 (169)
Q Consensus 72 ~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~ 123 (169)
.....+||.. ....|..+...|.+.|+....+.=...++.|..+.+
T Consensus 225 ~~~~~IIF~~------s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~ 270 (470)
T TIGR00614 225 KGKSGIIYCP------SRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHH 270 (470)
T ss_pred CCCceEEEEC------cHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHH
Confidence 3455689987 478899999999999998777666566666655443
No 421
>cd03082 TRX_Fd_NuoE_W_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E family, Tungsten-containing formate dehydrogenase (W-FDH) beta subunit; composed of proteins similar to the W-FDH beta subunit of Methylobacterium extorquens. W-FDH is a heterodimeric NAD-dependent enzyme catalyzing the conversion of formate to carbon dioxide. The beta subunit is a fusion protein containing an N-terminal NuoE domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. Similarly, the beta subunit of W-FDH is most likely involved in the electron transport chain during the NAD-dependen
Probab=24.07 E-value=99 Score=19.83 Aligned_cols=25 Identities=8% Similarity=0.198 Sum_probs=17.8
Q ss_pred CCCcEEEeCCeEeecc--HHHHHHHhc
Q 030914 128 PTFPQIFIKGEFIGGS--DIILNMHQS 152 (169)
Q Consensus 128 ~t~P~vfi~g~~iGG~--d~l~~~~~~ 152 (169)
..=|.+.|||++++.. +.+.++.+.
T Consensus 45 ~~gP~v~V~~~~~~~~t~~~i~~~~~~ 71 (72)
T cd03082 45 ERAPAALVGQRPVDGATPAAVAAAVEA 71 (72)
T ss_pred CCCCeEEECCEEeCCcCHHHHHHHHhc
Confidence 4679999999999875 344444443
No 422
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=23.92 E-value=92 Score=24.88 Aligned_cols=59 Identities=15% Similarity=0.220 Sum_probs=39.2
Q ss_pred CCCcchHHHHHHHHhCCCCccc---ccCCCccccCCCCCcc---------cccCCcccHHHHHHHHhhcCC
Q 030914 17 PSARSSRIVSGSLYHNGMKYST---DVPNDPDTHEDFRPTS---------KVDASGLSLKEVVEQDVKENP 75 (169)
Q Consensus 17 p~cgfs~~~~~~l~~~g~~~~s---~vl~d~~~~~~~k~~s---------~~pt~~~~~~~~i~~~~~~~~ 75 (169)
--|.||.++...|...++.|.. |+..-|+...++-|.. +|.+....+++.|++.....+
T Consensus 19 Gdcpf~qr~~m~L~~k~~~f~vttVd~~~kp~~f~~~sp~~~~P~l~~d~~~~tDs~~Ie~~Lee~l~~p~ 89 (221)
T KOG1422|consen 19 GDCPFCQRLFMTLELKGVPFKVTTVDLSRKPEWFLDISPGGKPPVLKFDEKWVTDSDKIEEFLEEKLPPPK 89 (221)
T ss_pred CCChhHHHHHHHHHHcCCCceEEEeecCCCcHHHHhhCCCCCCCeEEeCCceeccHHHHHHHHHHhcCCCC
Confidence 4699999999999999998864 6666555444443333 455555556666666655443
No 423
>PF11399 DUF3192: Protein of unknown function (DUF3192); InterPro: IPR021534 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=23.74 E-value=58 Score=22.86 Aligned_cols=14 Identities=29% Similarity=0.740 Sum_probs=12.4
Q ss_pred CCCcEEEeCCeEee
Q 030914 128 PTFPQIFIKGEFIG 141 (169)
Q Consensus 128 ~t~P~vfi~g~~iG 141 (169)
...|.||.||+.||
T Consensus 80 ECTplvF~n~~Lvg 93 (102)
T PF11399_consen 80 ECTPLVFKNGKLVG 93 (102)
T ss_pred ceEEEEEECCEEEE
Confidence 35799999999998
No 424
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=23.68 E-value=97 Score=21.09 Aligned_cols=44 Identities=20% Similarity=0.279 Sum_probs=24.5
Q ss_pred cHHHHHHHHhh--cCCeE--EEeecCCCCCCCccHHHHHHHHhcC-----CCCeEEEEc
Q 030914 62 SLKEVVEQDVK--ENPVM--LYMKGVPEFPQCGFSSLAVRVLGAY-----NVPISARNI 111 (169)
Q Consensus 62 ~~~~~i~~~~~--~~~Vv--ly~k~~~~~~~C~~c~~a~~~L~~~-----~v~~~~~di 111 (169)
+..+.++++.. .++|. +|..+ . +.|.+++++|++. .|.++..+.
T Consensus 5 ~~~~qL~~~f~~l~~pV~l~~f~~~-----~-~~~~e~~~ll~e~a~lSdkI~~~~~~~ 57 (94)
T cd02974 5 NLKQQLKAYLERLENPVELVASLDD-----S-EKSAELLELLEEIASLSDKITLEEDND 57 (94)
T ss_pred HHHHHHHHHHHhCCCCEEEEEEeCC-----C-cchHHHHHHHHHHHHhCCceEEEEecC
Confidence 34444444443 24544 46552 3 7889999988654 345555443
No 425
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=23.65 E-value=2.8e+02 Score=21.20 Aligned_cols=8 Identities=25% Similarity=0.929 Sum_probs=6.3
Q ss_pred CCCccHHH
Q 030914 87 PQCGFSSL 94 (169)
Q Consensus 87 ~~C~~c~~ 94 (169)
.+|++|.+
T Consensus 35 S~C~~~~q 42 (183)
T PRK10606 35 SKCGLTPQ 42 (183)
T ss_pred CCCCCcHH
Confidence 48999975
No 426
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=23.44 E-value=2.6e+02 Score=19.52 Aligned_cols=48 Identities=10% Similarity=0.161 Sum_probs=32.9
Q ss_pred cccHHHHHHHHhhcC-CeEEEeecCCC---CCCCccHHHHHHHHhcC-CCCeE
Q 030914 60 GLSLKEVVEQDVKEN-PVMLYMKGVPE---FPQCGFSSLAVRVLGAY-NVPIS 107 (169)
Q Consensus 60 ~~~~~~~i~~~~~~~-~Vvly~k~~~~---~~~C~~c~~a~~~L~~~-~v~~~ 107 (169)
+..+..+++++.+.. +++-++..+.. .+.||+=...++.+++. |+++.
T Consensus 51 g~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~~CP~~~~~~~~I~~~~gi~VV 103 (107)
T PF08821_consen 51 GRKLVRRIKKLKKNGADVIHLSSCMVKGNPHGPCPHIDEIKKIIEEKFGIEVV 103 (107)
T ss_pred hhHHHHHHHHHHHCCCCEEEEcCCEecCCCCCCCCCHHHHHHHHHHHhCCCEe
Confidence 456778888887543 45555544332 23899999999999888 88653
No 427
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=23.33 E-value=1.7e+02 Score=20.67 Aligned_cols=58 Identities=19% Similarity=0.357 Sum_probs=34.9
Q ss_pred cCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCe-EEEEcCCCHHHHHHHHHh-----cCCCCCcEEEeCCe
Q 030914 73 ENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPI-SARNILEDPELKSAVKAF-----SHWPTFPQIFIKGE 138 (169)
Q Consensus 73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~-~~~di~~~~~~~~~l~~~-----~g~~t~P~vfi~g~ 138 (169)
..+|+|--.| .|+|..+++. .++.|... ..+|...++. ...+ .+ ....++|.++|..+
T Consensus 34 ~g~I~Lv~RG-----~C~F~~K~~~-Aq~aGA~avII~n~~~~~~-~~~~-~m~~~~~~~~i~IP~v~Is~~ 97 (118)
T cd02127 34 NGNIALIERG-----GCSFLTKAIN-AQKAGALAVIITDVNNDSD-EYYV-EMIQDDSSRRADIPAAFLLGK 97 (118)
T ss_pred CCeEEEEECC-----CCCHHHHHHH-HHHCCCcEEEEEECCCCcc-ccce-EecCCCCCCCceEEEEEecHH
Confidence 3578888887 4999999877 46667654 4445543321 1111 11 12347899998764
No 428
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=23.33 E-value=2.1e+02 Score=24.05 Aligned_cols=26 Identities=15% Similarity=0.029 Sum_probs=21.7
Q ss_pred CCccHHHHHHHHhcCCCCeEEEEcCC
Q 030914 88 QCGFSSLAVRVLGAYNVPISARNILE 113 (169)
Q Consensus 88 ~C~~c~~a~~~L~~~~v~~~~~di~~ 113 (169)
....|.+|.+.|++.|++.+.+|+..
T Consensus 212 ~v~~al~Aa~~L~~~Gi~~~VId~~~ 237 (327)
T CHL00144 212 MRHHVLQAVKVLVEKGYDPEIIDLIS 237 (327)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEecCc
Confidence 34567889999999999999999964
No 429
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=23.11 E-value=5e+02 Score=24.91 Aligned_cols=39 Identities=18% Similarity=0.191 Sum_probs=31.5
Q ss_pred hcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHH
Q 030914 72 KENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPE 116 (169)
Q Consensus 72 ~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~ 116 (169)
+..+|+||+.+ .-.|..+-++|.+.|+++...+-..+..
T Consensus 439 ~g~pvLI~t~s------i~~se~ls~~L~~~gi~~~~Lna~~~~~ 477 (796)
T PRK12906 439 KGQPVLVGTVA------IESSERLSHLLDEAGIPHAVLNAKNHAK 477 (796)
T ss_pred CCCCEEEEeCc------HHHHHHHHHHHHHCCCCeeEecCCcHHH
Confidence 45789999984 6778999999999999998777665533
No 430
>COG5561 Predicted metal-binding protein [Function unknown]
Probab=23.09 E-value=2.3e+02 Score=19.60 Aligned_cols=43 Identities=7% Similarity=0.177 Sum_probs=25.3
Q ss_pred HHHHHHhhc--CCeEEEeecCC-CCCCCccH--HHH-HHHHhcCCCCeE
Q 030914 65 EVVEQDVKE--NPVMLYMKGVP-EFPQCGFS--SLA-VRVLGAYNVPIS 107 (169)
Q Consensus 65 ~~i~~~~~~--~~Vvly~k~~~-~~~~C~~c--~~a-~~~L~~~~v~~~ 107 (169)
..++.+... ..++-|+.-+- +.|.||+- .++ +...++.+|++.
T Consensus 46 n~~k~lk~~egaeaihfasCml~~~PkCpy~~~eei~Kk~ie~~~i~Vv 94 (101)
T COG5561 46 NQIKQLKGKEGAEAIHFASCMLAFKPKCPYASAEEIAKKEIEKMGIKVV 94 (101)
T ss_pred HHHHHHhhccccceeeeeeeeeccCCCCCccCHHHHHHHHHHHhCCcEE
Confidence 344444433 34555554444 34888876 454 777788887753
No 431
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=23.07 E-value=3.3e+02 Score=25.32 Aligned_cols=51 Identities=12% Similarity=0.034 Sum_probs=33.6
Q ss_pred HHHHHHHHhh-cCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHH
Q 030914 63 LKEVVEQDVK-ENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKS 119 (169)
Q Consensus 63 ~~~~i~~~~~-~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~ 119 (169)
+.+.|++.+. ..+|+||+. .+..+.+..++|.+.|++...+.=..+...|.
T Consensus 431 Ll~eI~~~~~~g~~vLIf~~------tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~ 482 (655)
T TIGR00631 431 LLSEIRQRVARNERVLVTTL------TKKMAEDLTDYLKELGIKVRYLHSEIDTLERV 482 (655)
T ss_pred HHHHHHHHHcCCCEEEEEEC------CHHHHHHHHHHHhhhccceeeeeCCCCHHHHH
Confidence 4444554443 456888886 47889999999999999876654334443333
No 432
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=22.98 E-value=91 Score=17.88 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=18.4
Q ss_pred EEeCCeEeec--cHHHHHHHhcccHH
Q 030914 133 IFIKGEFIGG--SDIILNMHQSGELK 156 (169)
Q Consensus 133 vfi~g~~iGG--~d~l~~~~~~g~L~ 156 (169)
+..||+-.|= .+++.++.++|++.
T Consensus 4 ~~~~g~~~GP~s~~el~~l~~~g~i~ 29 (45)
T PF14237_consen 4 YARNGQQQGPFSLEELRQLISSGEID 29 (45)
T ss_pred EeCCCeEECCcCHHHHHHHHHcCCCC
Confidence 3458888885 57789999998874
No 433
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=22.61 E-value=73 Score=21.63 Aligned_cols=37 Identities=14% Similarity=0.186 Sum_probs=25.4
Q ss_pred HHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeE
Q 030914 65 EVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPIS 107 (169)
Q Consensus 65 ~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~ 107 (169)
+.|++.... ++..|.- |...+...+.++|.+.|..|.
T Consensus 87 ~~l~~~~g~-~~~~f~~-----P~g~~~~~~~~~l~~~G~~y~ 123 (123)
T PF01522_consen 87 EILEEITGR-PPKGFRY-----PFGSYDDNTLQALREAGYKYD 123 (123)
T ss_dssp HHHHHHHSS-EESEEE------GGGEECHHHHHHHHHTT-EEE
T ss_pred HHHHHHhCC-CCcEEEC-----CCCCCCHHHHHHHHHcCCCcC
Confidence 344444444 6666766 778889999999999998773
No 434
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor. Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.
Probab=22.28 E-value=4.7e+02 Score=21.91 Aligned_cols=118 Identities=13% Similarity=0.128 Sum_probs=54.5
Q ss_pred CCCcchH-HHHHHHHhCCCCcccccCCCccc---cCCCCCcccccCCcccHHHHHHHHhhc---CCeE-EEeecCCCCCC
Q 030914 17 PSARSSR-IVSGSLYHNGMKYSTDVPNDPDT---HEDFRPTSKVDASGLSLKEVVEQDVKE---NPVM-LYMKGVPEFPQ 88 (169)
Q Consensus 17 p~cgfs~-~~~~~l~~~g~~~~s~vl~d~~~---~~~~k~~s~~pt~~~~~~~~i~~~~~~---~~Vv-ly~k~~~~~~~ 88 (169)
|.|.... .+..+....++++.+--...+.. +..++...............+.++++. .+|. ||.. +.....
T Consensus 74 p~~s~~~~~va~ia~~~~iP~Is~~a~~~~~s~~~~~yp~~~R~~p~~~~~~~a~~~ll~~~~W~~vaiiy~~-~~~~~~ 152 (387)
T cd06386 74 PVCEYAAAPVARLASHWNIPMISAGALAAGFSHKKSEYSHLTRVAPSYVKMGETFSALFERFHWRSALLVYED-DKQERN 152 (387)
T ss_pred CCCccHHHHHHHHHHhCCCcEEccccCchhhccCcccCCeeEEecCchHHHHHHHHHHHHhCCCeEEEEEEEc-CCCCcc
Confidence 6677766 45666677778776511111221 111221111111222333344444433 4444 5543 221123
Q ss_pred Ccc-HHHHHHHHhcCCCCeEEEEcCC--CHHHHHHHHHhcCCCCCcEEEeCC
Q 030914 89 CGF-SSLAVRVLGAYNVPISARNILE--DPELKSAVKAFSHWPTFPQIFIKG 137 (169)
Q Consensus 89 C~~-c~~a~~~L~~~~v~~~~~di~~--~~~~~~~l~~~~g~~t~P~vfi~g 137 (169)
|-+ -....+.+++.|+.+....... +.+.+..|++..... ..|++.+
T Consensus 153 ~~~~~~~l~~~~~~~gi~v~~~~~~~~~~~d~~~~l~~ik~~~--rvii~~~ 202 (387)
T cd06386 153 CYFTLEGVHHVFQEEGYHMSIYPFDETKDLDLDEIIRAIQASE--RVVIMCA 202 (387)
T ss_pred ceehHHHHHHHHHhcCceEEEEecCCCCcccHHHHHHHHHhcC--cEEEEec
Confidence 433 3355678888898876554432 234555555554332 4444443
No 435
>PRK10670 hypothetical protein; Provisional
Probab=22.09 E-value=1.2e+02 Score=22.65 Aligned_cols=42 Identities=14% Similarity=0.222 Sum_probs=25.8
Q ss_pred HHHHHHhcCCCCeEEEEcCCCHHH---HHHHHHhcCC---CCCcEEEe
Q 030914 94 LAVRVLGAYNVPISARNILEDPEL---KSAVKAFSHW---PTFPQIFI 135 (169)
Q Consensus 94 ~a~~~L~~~~v~~~~~di~~~~~~---~~~l~~~~g~---~t~P~vfi 135 (169)
.+.++|++.+++|+.+.+..++.. .+++.+..|+ ..+-.|++
T Consensus 3 ~~~~~L~~~~i~y~~~~~~h~~~~~~~~~~~a~~lgv~~~~i~Ktlv~ 50 (159)
T PRK10670 3 PAVKLLEKNKISFTLHTYEHDPAETNFGDEVVRKLGLNADQVYKTLLV 50 (159)
T ss_pred HHHHHHHHCCCCeEEEeeccCCcccchHHHHHHHhCCCHHHeEEEEEE
Confidence 478999999999998665543211 1334444443 34566655
No 436
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=22.06 E-value=3.3e+02 Score=23.34 Aligned_cols=66 Identities=20% Similarity=0.257 Sum_probs=44.8
Q ss_pred HHHHHHHhCCCCccc-ccCCCccccCCCCCcccccCCcccHHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcC
Q 030914 24 IVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKVDASGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAY 102 (169)
Q Consensus 24 ~~~~~l~~~g~~~~s-~vl~d~~~~~~~k~~s~~pt~~~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~ 102 (169)
.....|.+.|..... .+..| ..+.+.+.|+++.....++|.+-|+ ..+.-..+.+.+.+.
T Consensus 199 ~l~~~l~~~G~~~~~~~~v~D---------------d~~~i~~~l~~a~~~~DliittGG~----s~g~~D~~~~al~~~ 259 (394)
T cd00887 199 MLAALLRELGAEVVDLGIVPD---------------DPEALREALEEALEEADVVITSGGV----SVGDYDFVKEVLEEL 259 (394)
T ss_pred HHHHHHHHCCCEEEEeceeCC---------------CHHHHHHHHHHHhhCCCEEEEeCCC----CCCcchhHHHHHHhC
Confidence 456667777766544 44444 2345678888888889999999875 455556678888888
Q ss_pred CCCeEE
Q 030914 103 NVPISA 108 (169)
Q Consensus 103 ~v~~~~ 108 (169)
|.+...
T Consensus 260 g~~~~f 265 (394)
T cd00887 260 GGEVLF 265 (394)
T ss_pred CCeEEE
Confidence 755433
No 437
>PTZ00494 tuzin-like protein; Provisional
Probab=21.86 E-value=4e+02 Score=24.42 Aligned_cols=66 Identities=18% Similarity=0.264 Sum_probs=42.9
Q ss_pred HHHHHHHhhcCC-eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCH-HHHHHHHHhcCCCCCcEEEeCC
Q 030914 64 KEVVEQDVKENP-VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDP-ELKSAVKAFSHWPTFPQIFIKG 137 (169)
Q Consensus 64 ~~~i~~~~~~~~-Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~-~~~~~l~~~~g~~t~P~vfi~g 137 (169)
.+.+.++...|| |++|+.. -+|+-|.-.+......+++-..+||-..+ .+|--+|.+ .+|.|=+-|
T Consensus 384 RqvL~qld~aHPRIvV~TG~----~GcGKSslcRsAvrkE~~paV~VDVRg~EDtLrsVVKAL----gV~nve~CG 451 (664)
T PTZ00494 384 RSVLTQMAPSHPRIVALAGG----SGGGRCVPCRRAVRVEGVALVHVDVGGTEDTLRSVVRAL----GVSNVEVCG 451 (664)
T ss_pred HHHHhhccCCCCcEEEEecC----CCCCchHHHHHHHHHcCCCeEEEEecCCcchHHHHHHHh----CCCChhhhc
Confidence 334445544554 8888765 58999888888888999999999996533 334434433 345554444
No 438
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=21.79 E-value=3.1e+02 Score=25.71 Aligned_cols=64 Identities=17% Similarity=0.079 Sum_probs=39.3
Q ss_pred CCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCC----CHHHHHHHHHhcCCCCCcEEEeCCeEeeccHH
Q 030914 74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILE----DPELKSAVKAFSHWPTFPQIFIKGEFIGGSDI 145 (169)
Q Consensus 74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~----~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~ 145 (169)
.+|+|.+.| .....|.+|.+.|++.|+..+.+|+.. |.+....+.+. +-..|.+....+||+..
T Consensus 544 ~dvtIva~G----~~v~~Al~Aa~~L~~~GI~~~VId~~~lkPlD~~~i~~~~k~----~~~vVtvEe~~~GG~Gs 611 (677)
T PLN02582 544 ERVALLGYG----TAVQSCLAAASLLERHGLSATVADARFCKPLDRALIRSLAKS----HEVLITVEEGSIGGFGS 611 (677)
T ss_pred CCEEEEeec----HHHHHHHHHHHHHHhcCCCEEEEEcCcCCCCCHHHHHHHhhh----CCEEEEECCCCCCcHHH
Confidence 345555554 234567788889999999999999864 44443333321 11245555555588755
No 439
>cd04333 ProX_deacylase This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens ProX Ala-tRNA(Pro) deacylase and also the cis-acting prolyl-tRNA synthetase-editing domain (ProRS-INS). While ProX and ProRS-INS hydrolyze misacylated Ala-tRNA(Pro), the E. coli YbaK hydrolyzes misacylated Cys-tRNA(Pro). A few CD members are N-terminal, YbaK-ProX-like domains of an uncharacterized protein with a C-terminal, predicted Fe-S protein domain.
Probab=21.63 E-value=1.9e+02 Score=20.81 Aligned_cols=34 Identities=9% Similarity=0.012 Sum_probs=22.2
Q ss_pred HHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcC
Q 030914 93 SLAVRVLGAYNVPISARNILEDPELKSAVKAFSH 126 (169)
Q Consensus 93 ~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g 126 (169)
+++.++|++.+++|+.+.......-.+++.+..|
T Consensus 2 ~~~~~~L~~~~i~~~~~~~~~~~~t~~e~a~~~~ 35 (148)
T cd04333 2 ERVRAFLAARGLDLEVIELPESTRTAALAAEALG 35 (148)
T ss_pred HHHHHHHHHCCCCCeEEECCCCcchHHHHHHHcC
Confidence 4678899999999998887743222234444444
No 440
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=21.58 E-value=60 Score=20.38 Aligned_cols=34 Identities=24% Similarity=0.405 Sum_probs=20.8
Q ss_pred HHHHHhhcCCeEE-----E--eecCCCCCCCccHHHHHHHH
Q 030914 66 VVEQDVKENPVML-----Y--MKGVPEFPQCGFSSLAVRVL 99 (169)
Q Consensus 66 ~i~~~~~~~~Vvl-----y--~k~~~~~~~C~~c~~a~~~L 99 (169)
..+..+...+|+- | ++.-...|-||.|+++.+-|
T Consensus 17 I~esav~G~pVvALCGk~wvp~rdp~~~PVCP~Ck~iye~l 57 (58)
T PF11238_consen 17 IAESAVMGTPVVALCGKVWVPTRDPKPFPVCPECKEIYESL 57 (58)
T ss_pred HHHHHhcCceeEeeeCceeCCCCCCCCCCCCcCHHHHHHhc
Confidence 3455666666653 2 22212478999999987654
No 441
>PF10576 EndIII_4Fe-2S: Iron-sulfur binding domain of endonuclease III; InterPro: IPR003651 Endonuclease III (4.2.99.18 from EC) is a DNA repair enzyme which removes a number of damaged pyrimidines from DNA via its glycosylase activity and also cleaves the phosphodiester backbone at apurinic / apyrimidinic sites via a beta-elimination mechanism [, ]. The structurally related DNA glycosylase MutY recognises and excises the mutational intermediate 8-oxoguanine-adenine mispair []. The 3-D structures of Escherichia coli endonuclease III [] and catalytic domain of MutY [] have been determined. The structures contain two all-alpha domains: a sequence-continuous, six-helix domain (residues 22-132) and a Greek-key, four-helix domain formed by one N-terminal and three C-terminal helices (residues 1-21 and 133-211) together with the [Fe4S4] cluster. The cluster is bound entirely within the C-terminal loop by four cysteine residues with a ligation pattern Cys-(Xaa)6-Cys-(Xaa)2-Cys-(Xaa)5-Cys which is distinct from all other known Fe4S4 proteins. This structural motif is referred to as a [Fe4S4] cluster loop (FCL) []. Two DNA-binding motifs have been proposed, one at either end of the interdomain groove: the helix-hairpin-helix (HhH) and FCL motifs. The primary role of the iron-sulphur cluster appears to involve positioning conserved basic residues for interaction with the DNA phosphate backbone by forming the loop of the FCL motif [, ]. The iron-sulphur cluster loop (FCL) is also found in DNA-(apurinic or apyrimidinic site) lyase, a subfamily of endonuclease III. The enzyme has both apurinic and apyrimidinic endonuclease activity and a DNA N-glycosylase activity. It cuts damaged DNA at cytosines, thymines and guanines, and acts on the damaged strand 5' of the damaged site. The enzyme binds a 4Fe-4S cluster which is not important for the catalytic activity, but is probably involved in the alignment of the enzyme along the DNA strand.; GO: 0004519 endonuclease activity, 0051539 4 iron, 4 sulfur cluster binding; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A 2ABK_A 1KG7_A 1KG2_A 1MUN_A ....
Probab=21.36 E-value=37 Score=15.84 Aligned_cols=9 Identities=22% Similarity=0.309 Sum_probs=4.0
Q ss_pred CCCCCCCcc
Q 030914 13 IASYPSARS 21 (169)
Q Consensus 13 ~~~~p~cgf 21 (169)
||+.|.|+.
T Consensus 2 tar~P~C~~ 10 (17)
T PF10576_consen 2 TARKPKCEE 10 (17)
T ss_dssp -SSS--GGG
T ss_pred cCCCCcccc
Confidence 567777763
No 442
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=21.30 E-value=4e+02 Score=21.36 Aligned_cols=56 Identities=18% Similarity=0.225 Sum_probs=35.6
Q ss_pred CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcC---CCHHHHHHHHHhcCCCCCcEEEeCCe
Q 030914 75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNIL---EDPELKSAVKAFSHWPTFPQIFIKGE 138 (169)
Q Consensus 75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~---~~~~~~~~l~~~~g~~t~P~vfi~g~ 138 (169)
.+++|+. |+|+=+.-++.+.++.+.++...+.. ....+...+... ..-..+|||.-
T Consensus 32 ~~ll~Gp-----~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~vl~iDEi 90 (305)
T TIGR00635 32 HLLLYGP-----PGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLAAILTNL---EEGDVLFIDEI 90 (305)
T ss_pred eEEEECC-----CCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHHHHHHhc---ccCCEEEEehH
Confidence 3667766 89999999999999888876555432 122333333332 23457788873
No 443
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=21.15 E-value=2.4e+02 Score=22.13 Aligned_cols=60 Identities=12% Similarity=0.118 Sum_probs=37.5
Q ss_pred HHHHHHHHhcCCCCeEEEEcCCCHH----HHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHHHhcc
Q 030914 92 SSLAVRVLGAYNVPISARNILEDPE----LKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSG 153 (169)
Q Consensus 92 c~~a~~~L~~~~v~~~~~di~~~~~----~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~~~~g 153 (169)
...+.+.+..+++.+-..||+.+-. -.+.+++......+|.+.-+| |+..+++.++.+.|
T Consensus 143 ~~~~~~~~~~~g~~ii~tdI~~dGt~~G~d~eli~~i~~~~~~pvia~GG--i~s~ed~~~l~~~G 206 (221)
T TIGR00734 143 LEEVRDFLNSFDYGLIVLDIHSVGTMKGPNLELLTKTLELSEHPVMLGGG--ISGVEDLELLKEMG 206 (221)
T ss_pred HHHHHHHHHhcCCEEEEEECCccccCCCCCHHHHHHHHhhCCCCEEEeCC--CCCHHHHHHHHHCC
Confidence 4456667777777656667765311 123344445456789888777 57888887776654
No 444
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=20.87 E-value=3.3e+02 Score=21.34 Aligned_cols=78 Identities=9% Similarity=0.106 Sum_probs=51.0
Q ss_pred HHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHH
Q 030914 69 QDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILN 148 (169)
Q Consensus 69 ~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~ 148 (169)
+.+..++++--..+. .=.....+.+.|.+-|++.-++.... +...+.+++.. ..+|.+.|+---|-..+++..
T Consensus 3 ~~l~~~~liaVlr~~----~~e~a~~~~~al~~~Gi~~iEit~~t-~~a~~~i~~l~--~~~~~~~vGAGTVl~~~~a~~ 75 (204)
T TIGR01182 3 ELLREAKIVPVIRID----DVDDALPLAKALIEGGLRVLEVTLRT-PVALDAIRLLR--KEVPDALIGAGTVLNPEQLRQ 75 (204)
T ss_pred hHHhhCCEEEEEecC----CHHHHHHHHHHHHHcCCCEEEEeCCC-ccHHHHHHHHH--HHCCCCEEEEEeCCCHHHHHH
Confidence 445667776555542 22345677788889999998888855 44445555543 246778887766767777777
Q ss_pred HHhcc
Q 030914 149 MHQSG 153 (169)
Q Consensus 149 ~~~~g 153 (169)
+.+.|
T Consensus 76 a~~aG 80 (204)
T TIGR01182 76 AVDAG 80 (204)
T ss_pred HHHcC
Confidence 76655
No 445
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=20.86 E-value=2.1e+02 Score=18.75 Aligned_cols=36 Identities=11% Similarity=0.033 Sum_probs=24.8
Q ss_pred HHHHHHHhh---cCCeEEEeecCCCCCCCccHHHHHHHHhcCCCC
Q 030914 64 KEVVEQDVK---ENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVP 105 (169)
Q Consensus 64 ~~~i~~~~~---~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~ 105 (169)
.+.+..+.. ..+|++|.. .+..+..+..+|...|.+
T Consensus 46 ~~~~~~~~~~~~~~~vv~~c~------~g~rs~~~~~~l~~~G~~ 84 (101)
T cd01528 46 PERSKELDSDNPDKDIVVLCH------HGGRSMQVAQWLLRQGFE 84 (101)
T ss_pred HHHHHHhcccCCCCeEEEEeC------CCchHHHHHHHHHHcCCc
Confidence 344444433 568999976 356788888888888875
No 446
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=20.79 E-value=2.4e+02 Score=18.05 Aligned_cols=42 Identities=17% Similarity=0.256 Sum_probs=26.3
Q ss_pred HHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcC
Q 030914 63 LKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNIL 112 (169)
Q Consensus 63 ~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~ 112 (169)
+.+.+..+-...+|++|..+ ...+..+...|...|. +...+.
T Consensus 41 ~~~~~~~~~~~~~vvl~c~~------g~~a~~~a~~L~~~G~--~v~~l~ 82 (90)
T cd01524 41 LRDRLNELPKDKEIIVYCAV------GLRGYIAARILTQNGF--KVKNLD 82 (90)
T ss_pred HHHHHHhcCCCCcEEEEcCC------ChhHHHHHHHHHHCCC--CEEEec
Confidence 44444444345689999752 3457777888898887 444443
No 447
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=20.74 E-value=1e+02 Score=25.00 Aligned_cols=31 Identities=16% Similarity=0.167 Sum_probs=25.0
Q ss_pred hhccCCCCCC----CCcchHHHHHHHHhCCCCccc
Q 030914 8 LIFKGIASYP----SARSSRIVSGSLYHNGMKYST 38 (169)
Q Consensus 8 ~~~kg~~~~p----~cgfs~~~~~~l~~~g~~~~s 38 (169)
+|.|.++..| -|.||+++.-.|.+.|++|..
T Consensus 58 ~~~~~~~~~~~~~g~cp~s~rV~i~L~ekgi~ye~ 92 (265)
T PLN02817 58 VCVKASLTVPNKLGDCPFCQRVLLTLEEKHLPYDM 92 (265)
T ss_pred HHHhcccCCCCcCCCCcHHHHHHHHHHHcCCCCEE
Confidence 4567766444 599999999999999999875
No 448
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=20.65 E-value=2.6e+02 Score=23.71 Aligned_cols=56 Identities=11% Similarity=0.253 Sum_probs=37.1
Q ss_pred eEEEeecCCCCCCCccHHHHHHHHhc------------C--CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeC
Q 030914 76 VMLYMKGVPEFPQCGFSSLAVRVLGA------------Y--NVPISARNILEDPELKSAVKAFSHWPTFPQIFIK 136 (169)
Q Consensus 76 Vvly~k~~~~~~~C~~c~~a~~~L~~------------~--~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~ 136 (169)
|++|+. +.-.-.|+-|..+-+-++- . ++=|..+|.++.+++.+.+ +-.++|.+++=
T Consensus 64 IvmftA-~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~Fq~l----~ln~~P~l~~f 133 (331)
T KOG2603|consen 64 IVMFTA-LQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQVFQQL----NLNNVPHLVLF 133 (331)
T ss_pred EEEccc-cCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHHHHHh----cccCCCeEEEe
Confidence 566663 3344679999987764321 1 1236789999888876666 35678888774
No 449
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=20.49 E-value=1.8e+02 Score=21.79 Aligned_cols=33 Identities=9% Similarity=0.249 Sum_probs=24.1
Q ss_pred cCCeEEEeecCCCCCCCccHHHHHH-HHhcCCCCeEEE
Q 030914 73 ENPVMLYMKGVPEFPQCGFSSLAVR-VLGAYNVPISAR 109 (169)
Q Consensus 73 ~~~Vvly~k~~~~~~~C~~c~~a~~-~L~~~~v~~~~~ 109 (169)
...++||.. ++-|.+|+..+. +.+++|++.-++
T Consensus 99 g~~~tm~Vd----r~vC~~C~~~i~~~a~~lGl~~L~I 132 (146)
T PF14437_consen 99 GRSMTMYVD----RDVCGYCGGDIPSMAEKLGLKSLTI 132 (146)
T ss_pred CCeEEEEEC----cccchHHHHHHHHHHHHcCCCeEEE
Confidence 455778876 378999997766 668999985443
No 450
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=20.45 E-value=48 Score=25.93 Aligned_cols=45 Identities=22% Similarity=0.374 Sum_probs=25.8
Q ss_pred HHHHHHhcCCCCeEEEEcCCC-HHHHHHHHHhcCCC--CCcEEEeCCe
Q 030914 94 LAVRVLGAYNVPISARNILED-PELKSAVKAFSHWP--TFPQIFIKGE 138 (169)
Q Consensus 94 ~a~~~L~~~~v~~~~~di~~~-~~~~~~l~~~~g~~--t~P~vfi~g~ 138 (169)
+++++|.++||+.-.--+..+ .++++..+.+.+.+ -=|||..+|+
T Consensus 6 qaK~ll~~~gi~vp~g~~a~s~eea~~~~~~l~~~~~VvKaQvl~GgR 53 (202)
T PF08442_consen 6 QAKELLRKYGIPVPRGVVATSPEEAREAAKELGGKPLVVKAQVLAGGR 53 (202)
T ss_dssp HHHHHHHCTT----SEEEESSHHHHHHHHHHHTTSSEEEEE-SSSSTT
T ss_pred HHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCcEEEEEeEeecCc
Confidence 689999999999765555444 45555555554322 2377777775
No 451
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=20.43 E-value=74 Score=20.32 Aligned_cols=13 Identities=38% Similarity=0.751 Sum_probs=10.5
Q ss_pred cEEEeCCeEeecc
Q 030914 131 PQIFIKGEFIGGS 143 (169)
Q Consensus 131 P~vfi~g~~iGG~ 143 (169)
=-||++++|||-.
T Consensus 30 aEV~~g~EfiGvi 42 (63)
T PF11324_consen 30 AEVYIGDEFIGVI 42 (63)
T ss_pred eEEEeCCEEEEEE
Confidence 3589999999963
Done!