Your job contains 1 sequence.
>030915
MGSRLGTRVVHFTNLPIKLLMPNTFQNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR
TLNMEGKKKKRGGLLIAKPDYKKAYVTLKNPLSLSEDLFPIRVIQDEKERMRKEKESSIV
EEGKKHWLDGKQVVKGNNNERSNKKKGGFGDVAVAGVKFPWSSMKQKQR
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 030915
(169 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2140030 - symbol:AT4G39880 species:3702 "Arabi... 487 1.8e-46 1
DICTYBASE|DDB_G0275673 - symbol:DDB_G0275673 "50S ribosom... 142 6.6e-10 1
UNIPROTKB|P0ADZ0 - symbol:rplW "50S ribosomal subunit pro... 125 4.2e-08 1
UNIPROTKB|F1PBY1 - symbol:MRPL23 "Uncharacterized protein... 121 1.1e-07 1
MGI|MGI:1196612 - symbol:Mrpl23 "mitochondrial ribosomal ... 120 1.4e-07 1
RGD|68343 - symbol:Mrpl23 "mitochondrial ribosomal protei... 120 1.4e-07 1
TIGR_CMR|CPS_0871 - symbol:CPS_0871 "ribosomal protein L2... 119 1.8e-07 1
UNIPROTKB|Q16540 - symbol:MRPL23 "39S ribosomal protein L... 118 2.3e-07 1
TIGR_CMR|GSU_2855 - symbol:GSU_2855 "ribosomal protein L2... 118 2.3e-07 1
UNIPROTKB|Q3A9R8 - symbol:rplW "50S ribosomal protein L23... 116 3.8e-07 1
TIGR_CMR|CHY_2307 - symbol:CHY_2307 "ribosomal protein L2... 116 3.8e-07 1
TIGR_CMR|SO_0233 - symbol:SO_0233 "ribosomal protein L23"... 116 3.8e-07 1
UNIPROTKB|Q9KNY6 - symbol:rplW "50S ribosomal protein L23... 108 2.6e-06 1
TIGR_CMR|VC_2594 - symbol:VC_2594 "ribosomal protein L23"... 108 2.6e-06 1
UNIPROTKB|H7C2P7 - symbol:MRPL23 "39S ribosomal protein L... 107 3.4e-06 1
UNIPROTKB|A6NJD9 - symbol:MRPL23 "39S ribosomal protein L... 111 3.7e-06 1
TIGR_CMR|SPO_3823 - symbol:SPO_3823 "ribosomal protein L2... 103 9.0e-06 1
TIGR_CMR|CJE_1873 - symbol:CJE_1873 "ribosomal protein L2... 100 1.9e-05 1
UNIPROTKB|A8MVT4 - symbol:MRPL23 "39S ribosomal protein L... 107 2.6e-05 1
UNIPROTKB|A8MYK1 - symbol:MRPL23 "39S ribosomal protein L... 107 5.9e-05 1
TIGR_CMR|CBU_0240 - symbol:CBU_0240 "ribosomal protein L2... 95 6.3e-05 1
UNIPROTKB|Q32PA7 - symbol:MRPL23 "Mitochondrial ribosomal... 93 0.00010 1
TIGR_CMR|ECH_0411 - symbol:ECH_0411 "ribosomal protein L2... 86 0.00072 1
>TAIR|locus:2140030 [details] [associations]
symbol:AT4G39880 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA;ISS] [GO:0006412 "translation" evidence=IEA;ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] [GO:0006354
"DNA-dependent transcription, elongation" evidence=RCA] [GO:0009220
"pyrimidine ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR012677 InterPro:IPR012678 InterPro:IPR013025
Pfam:PF00276 EMBL:CP002687 GO:GO:0000166 GO:GO:0006412
Gene3D:3.30.70.330 GO:GO:0005840 GO:GO:0003735 EMBL:AL161596
EMBL:AL035708 SUPFAM:SSF54189 EMBL:AY093190 EMBL:BT006553
IPI:IPI00533558 PIR:T06094 RefSeq:NP_195698.1 UniGene:At.31054
ProteinModelPortal:Q9SMR5 SMR:Q9SMR5 STRING:Q9SMR5 PRIDE:Q9SMR5
EnsemblPlants:AT4G39880.1 GeneID:830147 KEGG:ath:AT4G39880
TAIR:At4g39880 InParanoid:Q9SMR5 OMA:LIAKPDY PhylomeDB:Q9SMR5
ProtClustDB:CLSN2685886 Genevestigator:Q9SMR5 Uniprot:Q9SMR5
Length = 178
Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
Identities = 109/177 (61%), Positives = 123/177 (69%)
Query: 1 MGSRLGTRVVHFTNLPIKLLMPNTFQNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
MGSRLG RVVHF NLPIKLLMP NI E ALKTIPSASKIEIKRVLESLYGF+V+KV
Sbjct: 1 MGSRLGGRVVHFANLPIKLLMPAKLTNIHEFALKTIPSASKIEIKRVLESLYGFDVEKVN 60
Query: 61 TLNMEGKKKKRGGLLIAKPDYKKAYVTLKNPLSLSEDLFPIRVIQDXXXXXXXXXXSSIV 120
TLNM+GKKKKRGGLLIAK DYKKAYVTL++PLS+S DLFP++ I++ SS V
Sbjct: 61 TLNMDGKKKKRGGLLIAKADYKKAYVTLRSPLSISRDLFPVKYIEEDRKSKVKG--SSFV 118
Query: 121 EEG---KKHWLDGKQ------VVKGNNN---ERSNKKKGGFGDVAVAGVKFPWSSMK 165
EE K HWLD K+ KG ER+N G G A KFPWS+M+
Sbjct: 119 EEEDDKKSHWLDRKEKREIGGYGKGKGRRGGERANSPTRG-GAAAAGTAKFPWSNMR 174
>DICTYBASE|DDB_G0275673 [details] [associations]
symbol:DDB_G0275673 "50S ribosomal protein L23"
species:44689 "Dictyostelium discoideum" [GO:0006412 "translation"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0003735 "structural constituent
of ribosome" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR012677 InterPro:IPR012678 InterPro:IPR013025
Pfam:PF00276 dictyBase:DDB_G0275673 GO:GO:0000166 GO:GO:0006412
Gene3D:3.30.70.330 EMBL:AAFI02000013 GO:GO:0005840 GO:GO:0003735
SUPFAM:SSF54189 RefSeq:XP_643479.1 ProteinModelPortal:Q86HC7
EnsemblProtists:DDB0167260 GeneID:8620060 KEGG:ddi:DDB_G0275673
eggNOG:NOG324897 InParanoid:Q86HC7 OMA:DKVNTIN
ProtClustDB:CLSZ2430944 Uniprot:Q86HC7
Length = 120
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 39/98 (39%), Positives = 59/98 (60%)
Query: 5 LGTRV---VHFTNLPIKLLMPN--TFQNITEIALKTIPSASKIEIKRVLESLYGFEVDKV 59
LGTR+ V F N+ ++++ + TF+N +I KT S K +IK +++LY VDKV
Sbjct: 10 LGTRLMNSVFFPNIKLQVIRNSGKTFENTNKIMFKTDCSVGKTDIKTYMKALYDVNVDKV 69
Query: 60 RTLNMEGK-KKKRGGL-----LIAK---PDYKKAYVTL 88
T+N++G+ K K GL L +K PDYKKA +T+
Sbjct: 70 NTINVQGRIKSKTKGLQKRSKLNSKYKTPDYKKAIITV 107
>UNIPROTKB|P0ADZ0 [details] [associations]
symbol:rplW "50S ribosomal subunit protein L23"
species:83333 "Escherichia coli K-12" [GO:0006412 "translation"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0019843 "rRNA binding" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR012677 InterPro:IPR012678
InterPro:IPR013025 Pfam:PF00276 InterPro:IPR001014 GO:GO:0000166
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006412 Gene3D:3.30.70.330
EMBL:U18997 GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 PDB:2RDO
PDBsum:2RDO SUPFAM:SSF54189 eggNOG:COG0089 PROSITE:PS00050
HAMAP:MF_01369_B KO:K02892 PDB:3J0T PDB:3J0W PDB:3J0Y PDB:3J11
PDB:3J12 PDB:3J14 PDB:3SGF PDB:3UOS PDBsum:3J0T PDBsum:3J0W
PDBsum:3J0Y PDBsum:3J11 PDBsum:3J12 PDBsum:3J14 PDBsum:3SGF
PDBsum:3UOS PDB:1P85 PDB:1P86 PDB:1VS6 PDB:1VS8 PDB:1VT2 PDB:2AW4
PDB:2AWB PDB:2GYA PDB:2GYC PDB:2I2T PDB:2I2V PDB:2J28 PDB:2QAM
PDB:2QAO PDB:2QBA PDB:2QBC PDB:2QBE PDB:2QBG PDB:2QBI PDB:2QBK
PDB:2QOV PDB:2QOX PDB:2QOZ PDB:2QP1 PDB:2WWQ PDB:2Z4L PDB:2Z4N
PDB:3E1B PDB:3E1D PDB:3FIK PDB:3I1N PDB:3I1P PDB:3I1R PDB:3I1T
PDB:3I20 PDB:3I22 PDB:3IZT PDB:3IZU PDB:3J01 PDB:3J19 PDB:3KCR
PDB:3OAS PDB:3OAT PDB:3OFC PDB:3OFD PDB:3OFQ PDB:3OFR PDB:3OFZ
PDB:3OG0 PDB:3ORB PDB:3R8S PDB:3R8T PDB:4GAR PDB:4GAU PDBsum:1P85
PDBsum:1P86 PDBsum:1VS6 PDBsum:1VS8 PDBsum:1VT2 PDBsum:2AW4
PDBsum:2AWB PDBsum:2GYA PDBsum:2GYC PDBsum:2I2T PDBsum:2I2V
PDBsum:2J28 PDBsum:2QAM PDBsum:2QAO PDBsum:2QBA PDBsum:2QBC
PDBsum:2QBE PDBsum:2QBG PDBsum:2QBI PDBsum:2QBK PDBsum:2QOV
PDBsum:2QOX PDBsum:2QOZ PDBsum:2QP1 PDBsum:2WWQ PDBsum:2Z4L
PDBsum:2Z4N PDBsum:3E1B PDBsum:3E1D PDBsum:3FIK PDBsum:3I1N
PDBsum:3I1P PDBsum:3I1R PDBsum:3I1T PDBsum:3I20 PDBsum:3I22
PDBsum:3IZT PDBsum:3IZU PDBsum:3J01 PDBsum:3J19 PDBsum:3KCR
PDBsum:3OAS PDBsum:3OAT PDBsum:3OFC PDBsum:3OFD PDBsum:3OFQ
PDBsum:3OFR PDBsum:3OFZ PDBsum:3OG0 PDBsum:3ORB PDBsum:3R8S
PDBsum:3R8T PDBsum:4GAR PDBsum:4GAU PDB:3BBX PDBsum:3BBX
EMBL:X02613 ProtClustDB:PRK05738 HOGENOM:HOG000231364 OMA:HRAAKPD
PIR:A65125 RefSeq:NP_417777.1 RefSeq:YP_492114.1 PDB:2VRH
PDBsum:2VRH ProteinModelPortal:P0ADZ0 SMR:P0ADZ0 DIP:DIP-35972N
IntAct:P0ADZ0 MINT:MINT-1225825 PaxDb:P0ADZ0 PRIDE:P0ADZ0
EnsemblBacteria:EBESCT00000003161 EnsemblBacteria:EBESCT00000014267
GeneID:12932296 GeneID:947819 KEGG:ecj:Y75_p3858 KEGG:eco:b3318
PATRIC:32122068 EchoBASE:EB0876 EcoGene:EG10883
BioCyc:EcoCyc:EG10883-MONOMER BioCyc:ECOL316407:JW3280-MONOMER
EvolutionaryTrace:P0ADZ0 Genevestigator:P0ADZ0 Uniprot:P0ADZ0
Length = 100
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 28/64 (43%), Positives = 40/64 (62%)
Query: 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLKN 90
I LK A+K EIK ++ L+ EV+ V TL ++GK K+ G + + D+KKAYVTLK
Sbjct: 30 IVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKE 89
Query: 91 PLSL 94
+L
Sbjct: 90 GQNL 93
>UNIPROTKB|F1PBY1 [details] [associations]
symbol:MRPL23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006412 "translation" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR012677 InterPro:IPR012678
InterPro:IPR013025 Pfam:PF00276 GO:GO:0000166 GO:GO:0006412
Gene3D:3.30.70.330 GO:GO:0005840 GO:GO:0003735 SUPFAM:SSF54189
GeneTree:ENSGT00390000007739 OMA:RVFLPNF CTD:6150 EMBL:AAEX03011552
RefSeq:XP_540784.3 Ensembl:ENSCAFT00000016030 GeneID:483663
KEGG:cfa:483663 Uniprot:F1PBY1
Length = 153
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 30/91 (32%), Positives = 47/91 (51%)
Query: 13 TNLPIKLLMPNTFQNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRG 72
TN I+L+ P T Q + + ++++++ LE +Y V VRT G +KR
Sbjct: 22 TNFFIQLVRPGTAQPEDTVQFRIPMEMTRVDLRNYLERIYNVPVAAVRTRVQHGSNRKRD 81
Query: 73 --GLLIAKPDYKKAYVTLKNPLSLS-EDLFP 100
+ + KPDYK AYV L + + + DLFP
Sbjct: 82 YRNVRVKKPDYKVAYVQLAHGQTFTFPDLFP 112
>MGI|MGI:1196612 [details] [associations]
symbol:Mrpl23 "mitochondrial ribosomal protein L23"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=ISO] [GO:0005622 "intracellular" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0005762 "mitochondrial large
ribosomal subunit" evidence=ISO] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR012677
InterPro:IPR012678 InterPro:IPR013025 Pfam:PF00276 EMBL:AB049646
MGI:MGI:1196612 GO:GO:0005739 GO:GO:0000166 GO:GO:0006412
Gene3D:3.30.70.330 GO:GO:0005840 GO:GO:0003735 SUPFAM:SSF54189
eggNOG:NOG309821 GeneTree:ENSGT00390000007739 HOGENOM:HOG000231896
OMA:RVFLPNF CTD:6150 HOVERGEN:HBG052914 OrthoDB:EOG4N5VZ3
EMBL:U84902 EMBL:U84903 EMBL:AK086805 EMBL:BC081460 EMBL:U71209
IPI:IPI00136310 RefSeq:NP_035418.1 UniGene:Mm.12144
ProteinModelPortal:O35972 SMR:O35972 STRING:O35972
PhosphoSite:O35972 PaxDb:O35972 PRIDE:O35972
Ensembl:ENSMUST00000038675 GeneID:19935 KEGG:mmu:19935
InParanoid:O35972 NextBio:297449 Bgee:O35972 CleanEx:MM_MRPL23
Genevestigator:O35972 GermOnline:ENSMUSG00000037772
GermOnline:ENSMUSG00000075279 Uniprot:O35972
Length = 146
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 30/91 (32%), Positives = 47/91 (51%)
Query: 13 TNLPIKLLMPNTFQNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRG 72
TN I+L+ P T Q + + ++++++ LE +Y V VRT G ++R
Sbjct: 22 TNFFIQLVRPGTAQPEDTVQFRIPMEMTRVDLRNYLEQIYNVPVAAVRTRVQHGSNRRRD 81
Query: 73 --GLLIAKPDYKKAYVTLKNPLSLS-EDLFP 100
+ I KPDYK AYV L + + + DLFP
Sbjct: 82 HKNVRIKKPDYKVAYVQLAHGQTFTFPDLFP 112
>RGD|68343 [details] [associations]
symbol:Mrpl23 "mitochondrial ribosomal protein L23" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA;ISO] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR012677 InterPro:IPR012678 InterPro:IPR013025
Pfam:PF00276 EMBL:U62635 RGD:68343 GO:GO:0005739 GO:GO:0000166
GO:GO:0006412 Gene3D:3.30.70.330 GO:GO:0005840 GO:GO:0003735
SUPFAM:SSF54189 eggNOG:NOG309821 GeneTree:ENSGT00390000007739
HOGENOM:HOG000231896 OMA:RVFLPNF CTD:6150 HOVERGEN:HBG052914
OrthoDB:EOG4N5VZ3 IPI:IPI00211861 RefSeq:NP_071974.1 UniGene:Rn.1608
ProteinModelPortal:Q63750 IntAct:Q63750 STRING:Q63750 PRIDE:Q63750
Ensembl:ENSRNOT00000027585 GeneID:64360 KEGG:rno:64360
UCSC:RGD:68343 InParanoid:Q63750 NextBio:613062
Genevestigator:Q63750 GermOnline:ENSRNOG00000020354 Uniprot:Q63750
Length = 146
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 30/91 (32%), Positives = 47/91 (51%)
Query: 13 TNLPIKLLMPNTFQNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRG 72
TN I+L+ P T Q + + ++++++ LE +Y V VRT G ++R
Sbjct: 22 TNFFIQLVRPGTAQPEDTVQFRIPMEMTRVDLRNYLEQIYNVPVAAVRTRVQHGSNRRRD 81
Query: 73 --GLLIAKPDYKKAYVTLKNPLSLS-EDLFP 100
+ I KPDYK AYV L + + + DLFP
Sbjct: 82 HKNVRIKKPDYKVAYVQLAHGQTFTFPDLFP 112
>TIGR_CMR|CPS_0871 [details] [associations]
symbol:CPS_0871 "ribosomal protein L23" species:167879
"Colwellia psychrerythraea 34H" [GO:0042254 "ribosome biogenesis"
evidence=ISS] InterPro:IPR012677 InterPro:IPR012678
InterPro:IPR013025 Pfam:PF00276 InterPro:IPR001014 GO:GO:0000166
GO:GO:0006412 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0003735 GO:GO:0019843
SUPFAM:SSF54189 eggNOG:COG0089 PROSITE:PS00050 HAMAP:MF_01369_B
KO:K02892 ProtClustDB:PRK05738 HSSP:Q9RXK0 HOGENOM:HOG000231364
OMA:HRAAKPD RefSeq:YP_267620.1 ProteinModelPortal:Q487Z5 SMR:Q487Z5
STRING:Q487Z5 GeneID:3520368 KEGG:cps:CPS_0871 PATRIC:21465035
BioCyc:CPSY167879:GI48-957-MONOMER Uniprot:Q487Z5
Length = 100
Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 31/77 (40%), Positives = 41/77 (53%)
Query: 19 LLMPNTFQNITEIA-------LKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKR 71
LL PN + T A K A+K EIK +E L+ V+ V TLN++GK K+
Sbjct: 11 LLAPNISEKATTAAEANNTVVFKVATDATKAEIKAAVEKLFEVTVEGVNTLNVKGKVKRT 70
Query: 72 GGLLIAKPDYKKAYVTL 88
G + D+KKAYVTL
Sbjct: 71 GARFGRRNDWKKAYVTL 87
>UNIPROTKB|Q16540 [details] [associations]
symbol:MRPL23 "39S ribosomal protein L23, mitochondrial"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0003723
"RNA binding" evidence=TAS] [GO:0005762 "mitochondrial large
ribosomal subunit" evidence=TAS] InterPro:IPR012677
InterPro:IPR012678 InterPro:IPR013025 Pfam:PF00276 GO:GO:0000166
GO:GO:0006412 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005762
GO:GO:0003735 EMBL:CH471158 EMBL:AC051649 SUPFAM:SSF54189
eggNOG:NOG309821 HOGENOM:HOG000231896 OMA:RVFLPNF CTD:6150
HOVERGEN:HBG052914 OrthoDB:EOG4N5VZ3 EMBL:Z49254 EMBL:U26596
EMBL:BC027710 EMBL:AB051340 IPI:IPI00293476 RefSeq:NP_066957.3
UniGene:Hs.3254 ProteinModelPortal:Q16540 SMR:Q16540 IntAct:Q16540
STRING:Q16540 PhosphoSite:Q16540 DMDM:68566020 PaxDb:Q16540
PRIDE:Q16540 DNASU:6150 Ensembl:ENST00000381519
Ensembl:ENST00000397298 GeneID:6150 KEGG:hsa:6150 UCSC:uc001lux.3
GeneCards:GC11P001961 HGNC:HGNC:10322 MIM:600789 neXtProt:NX_Q16540
PharmGKB:PA30953 GenomeRNAi:6150 NextBio:23889 ArrayExpress:Q16540
Bgee:Q16540 CleanEx:HS_MRPL23 Genevestigator:Q16540
GermOnline:ENSG00000205751 Uniprot:Q16540
Length = 153
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 30/91 (32%), Positives = 46/91 (50%)
Query: 13 TNLPIKLLMPNTFQNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRG 72
TN I+L+ P Q + + ++++++ LE +Y V VRT G K+R
Sbjct: 22 TNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGIYNVPVAAVRTRVQHGSNKRRD 81
Query: 73 --GLLIAKPDYKKAYVTLKNPLSLS-EDLFP 100
+ I KPDYK AYV L + + + DLFP
Sbjct: 82 HRNVRIKKPDYKVAYVQLAHGQTFTFPDLFP 112
>TIGR_CMR|GSU_2855 [details] [associations]
symbol:GSU_2855 "ribosomal protein L23" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR012677
InterPro:IPR012678 InterPro:IPR013025 Pfam:PF00276
InterPro:IPR001014 GO:GO:0000166 GO:GO:0006412 Gene3D:3.30.70.330
GO:GO:0005840 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0003735
GO:GO:0019843 SUPFAM:SSF54189 eggNOG:COG0089 PROSITE:PS00050
HAMAP:MF_01369_B KO:K02892 HSSP:Q9RA57 ProtClustDB:PRK05738
HOGENOM:HOG000231364 OMA:HRAAKPD RefSeq:NP_953898.1
ProteinModelPortal:Q748Z1 PRIDE:Q748Z1 GeneID:2686782
KEGG:gsu:GSU2855 PATRIC:22028557
BioCyc:GSUL243231:GH27-2829-MONOMER Uniprot:Q748Z1
Length = 94
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 29/63 (46%), Positives = 40/63 (63%)
Query: 39 ASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLKNPLSLSEDL 98
A+KIEIK +E L+ EV +V T+N+ GK K+ G + ++KKAYVTLK S+ D
Sbjct: 34 ANKIEIKEAVEKLFKVEVAEVNTVNVAGKVKRFGRHYGKRSNWKKAYVTLKEGSSV--DF 91
Query: 99 FPI 101
F I
Sbjct: 92 FEI 94
>UNIPROTKB|Q3A9R8 [details] [associations]
symbol:rplW "50S ribosomal protein L23" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] InterPro:IPR012677 InterPro:IPR012678
InterPro:IPR013025 Pfam:PF00276 GO:GO:0000166 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006412 Gene3D:3.30.70.330
GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 SUPFAM:SSF54189
eggNOG:COG0089 PROSITE:PS00050 HAMAP:MF_01369_B
HOGENOM:HOG000231366 KO:K02892 ProtClustDB:PRK05738 HSSP:Q9RXK0
RefSeq:YP_361116.1 ProteinModelPortal:Q3A9R8 SMR:Q3A9R8
STRING:Q3A9R8 GeneID:3726932 KEGG:chy:CHY_2307 PATRIC:21277685
OMA:HRAAKPD BioCyc:CHYD246194:GJCN-2306-MONOMER Uniprot:Q3A9R8
Length = 95
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 23/52 (44%), Positives = 36/52 (69%)
Query: 38 SASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLK 89
+A+KIEIK +E L+ +V+KV T+ ++GK K+ G + P+YKKA V L+
Sbjct: 33 NANKIEIKNAIEELFKVKVEKVNTIRVKGKMKRVGRFVGRTPEYKKAIVKLR 84
>TIGR_CMR|CHY_2307 [details] [associations]
symbol:CHY_2307 "ribosomal protein L23" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] InterPro:IPR012677 InterPro:IPR012678
InterPro:IPR013025 Pfam:PF00276 GO:GO:0000166 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006412 Gene3D:3.30.70.330
GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 SUPFAM:SSF54189
eggNOG:COG0089 PROSITE:PS00050 HAMAP:MF_01369_B
HOGENOM:HOG000231366 KO:K02892 ProtClustDB:PRK05738 HSSP:Q9RXK0
RefSeq:YP_361116.1 ProteinModelPortal:Q3A9R8 SMR:Q3A9R8
STRING:Q3A9R8 GeneID:3726932 KEGG:chy:CHY_2307 PATRIC:21277685
OMA:HRAAKPD BioCyc:CHYD246194:GJCN-2306-MONOMER Uniprot:Q3A9R8
Length = 95
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 23/52 (44%), Positives = 36/52 (69%)
Query: 38 SASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLK 89
+A+KIEIK +E L+ +V+KV T+ ++GK K+ G + P+YKKA V L+
Sbjct: 33 NANKIEIKNAIEELFKVKVEKVNTIRVKGKMKRVGRFVGRTPEYKKAIVKLR 84
>TIGR_CMR|SO_0233 [details] [associations]
symbol:SO_0233 "ribosomal protein L23" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR012677 InterPro:IPR012678 InterPro:IPR013025
Pfam:PF00276 InterPro:IPR001014 GO:GO:0000166 GO:GO:0006412
Gene3D:3.30.70.330 GO:GO:0005840 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0003735 GO:GO:0019843
SUPFAM:SSF54189 eggNOG:COG0089 PROSITE:PS00050 HAMAP:MF_01369_B
KO:K02892 HSSP:Q9RA57 ProtClustDB:PRK05738 HOGENOM:HOG000231364
OMA:HRAAKPD RefSeq:NP_715873.1 ProteinModelPortal:Q8EK66 SMR:Q8EK66
GeneID:1168116 KEGG:son:SO_0233 PATRIC:23520159 Uniprot:Q8EK66
Length = 100
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 25/58 (43%), Positives = 35/58 (60%)
Query: 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTL 88
+ + A+K EIK + L+ EV+ VRTL +GK K+ GG + D+KKAYVTL
Sbjct: 30 VVFRVAIDATKAEIKAAVAKLFEVEVESVRTLVSKGKTKRTGGRTGRRSDWKKAYVTL 87
>UNIPROTKB|Q9KNY6 [details] [associations]
symbol:rplW "50S ribosomal protein L23" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR012677 InterPro:IPR012678
InterPro:IPR013025 Pfam:PF00276 InterPro:IPR001014 GO:GO:0000166
GO:GO:0006412 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.70.330 GO:GO:0005840 GO:GO:0003735 GO:GO:0019843
SUPFAM:SSF54189 eggNOG:COG0089 PROSITE:PS00050 HAMAP:MF_01369_B
KO:K02892 HSSP:Q9RA57 ProtClustDB:PRK05738 OMA:HRAAKPD PIR:D82059
RefSeq:NP_232222.1 ProteinModelPortal:Q9KNY6 SMR:Q9KNY6
DNASU:2615611 GeneID:2615611 KEGG:vch:VC2594 PATRIC:20084214
Uniprot:Q9KNY6
Length = 100
Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 26/58 (44%), Positives = 34/58 (58%)
Query: 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTL 88
I K A+K EIK +E L+ EV V TL ++GK K++G + D KKAYVTL
Sbjct: 30 IVFKVAKDATKKEIKAAVEKLFEVEVKSVNTLIIKGKTKRQGLRQGRRSDVKKAYVTL 87
>TIGR_CMR|VC_2594 [details] [associations]
symbol:VC_2594 "ribosomal protein L23" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR012677 InterPro:IPR012678 InterPro:IPR013025
Pfam:PF00276 InterPro:IPR001014 GO:GO:0000166 GO:GO:0006412
EMBL:AE003852 GenomeReviews:AE003852_GR Gene3D:3.30.70.330
GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 SUPFAM:SSF54189
eggNOG:COG0089 PROSITE:PS00050 HAMAP:MF_01369_B KO:K02892
HSSP:Q9RA57 ProtClustDB:PRK05738 OMA:HRAAKPD PIR:D82059
RefSeq:NP_232222.1 ProteinModelPortal:Q9KNY6 SMR:Q9KNY6
DNASU:2615611 GeneID:2615611 KEGG:vch:VC2594 PATRIC:20084214
Uniprot:Q9KNY6
Length = 100
Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 26/58 (44%), Positives = 34/58 (58%)
Query: 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTL 88
I K A+K EIK +E L+ EV V TL ++GK K++G + D KKAYVTL
Sbjct: 30 IVFKVAKDATKKEIKAAVEKLFEVEVKSVNTLIIKGKTKRQGLRQGRRSDVKKAYVTL 87
>UNIPROTKB|H7C2P7 [details] [associations]
symbol:MRPL23 "39S ribosomal protein L23, mitochondrial"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR012677 InterPro:IPR012678
InterPro:IPR013025 Pfam:PF00276 GO:GO:0000166 GO:GO:0006412
Gene3D:3.30.70.330 GO:GO:0005840 GO:GO:0003735 EMBL:AC051649
SUPFAM:SSF54189 HGNC:HGNC:10322 ProteinModelPortal:H7C2P7
Ensembl:ENST00000429295 Uniprot:H7C2P7
Length = 118
Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 26/78 (33%), Positives = 39/78 (50%)
Query: 13 TNLPIKLLMPNTFQNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRG 72
TN I+L+ P Q + + ++++++ LE +Y V VRT G K+R
Sbjct: 17 TNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGIYNVPVAAVRTRVQHGSNKRRD 76
Query: 73 --GLLIAKPDYKKAYVTL 88
+ I KPDYK AYV L
Sbjct: 77 HRNVRIKKPDYKVAYVQL 94
>UNIPROTKB|A6NJD9 [details] [associations]
symbol:MRPL23 "39S ribosomal protein L23, mitochondrial"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR012677 InterPro:IPR012678
InterPro:IPR013025 Pfam:PF00276 GO:GO:0000166 GO:GO:0006412
Gene3D:3.30.70.330 GO:GO:0005840 GO:GO:0003735 EMBL:AC051649
SUPFAM:SSF54189 HGNC:HGNC:10322 IPI:IPI00658024
ProteinModelPortal:A6NJD9 SMR:A6NJD9 STRING:A6NJD9 PRIDE:A6NJD9
Ensembl:ENST00000381514 HOGENOM:HOG000207863 ArrayExpress:A6NJD9
Bgee:A6NJD9 Uniprot:A6NJD9
Length = 163
Score = 111 (44.1 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 29/85 (34%), Positives = 43/85 (50%)
Query: 13 TNLPIKLLMPNTFQNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRG 72
TN I+L+ P Q + + ++++++ LE +Y V VRT G K+R
Sbjct: 22 TNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGIYNVPVAAVRTRVQHGSNKRRD 81
Query: 73 --GLLIAKPDYKKAYVTL-KNPLSL 94
+ I KPDYK AYV L +P SL
Sbjct: 82 HRNVRIKKPDYKVAYVQLVPHPRSL 106
>TIGR_CMR|SPO_3823 [details] [associations]
symbol:SPO_3823 "ribosomal protein L23" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0042255 "ribosome assembly"
evidence=ISS] InterPro:IPR012677 InterPro:IPR012678
InterPro:IPR013025 Pfam:PF00276 GO:GO:0000166 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006412 Gene3D:3.30.70.330
GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 SUPFAM:SSF54189
eggNOG:COG0089 PROSITE:PS00050 HAMAP:MF_01369_B KO:K02892
HSSP:Q9RA57 ProtClustDB:PRK05738 HOGENOM:HOG000231364 OMA:HRAAKPD
RefSeq:YP_169011.1 ProteinModelPortal:Q5LLU8 GeneID:3195995
KEGG:sil:SPO3823 PATRIC:23381147 Uniprot:Q5LLU8
Length = 98
Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 26/62 (41%), Positives = 38/62 (61%)
Query: 39 ASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLK--NPLSLSE 96
++K +IK +ESL+G +V V T +GK K+ G L + D KKAYVTL+ N + +S
Sbjct: 37 SNKPQIKEAVESLFGVKVKAVNTTITKGKVKRFRGQLGKRKDVKKAYVTLEEGNTIDVST 96
Query: 97 DL 98
L
Sbjct: 97 GL 98
>TIGR_CMR|CJE_1873 [details] [associations]
symbol:CJE_1873 "ribosomal protein L23" species:195099
"Campylobacter jejuni RM1221" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] InterPro:IPR012677 InterPro:IPR012678
InterPro:IPR013025 Pfam:PF00276 GO:GO:0000166 GO:GO:0006412
Gene3D:3.30.70.330 GO:GO:0005840 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0003735 GO:GO:0019843
SUPFAM:SSF54189 eggNOG:COG0089 PROSITE:PS00050 HAMAP:MF_01369_B
KO:K02892 ProtClustDB:PRK05738 PIR:E81268 RefSeq:YP_179843.1
HSSP:Q9RXK0 ProteinModelPortal:Q5HS92 STRING:Q5HS92 GeneID:3232500
KEGG:cjr:CJE1873 PATRIC:20045578 HOGENOM:HOG000231364 OMA:TKNGLKE
BioCyc:CJEJ195099:GJC0-1912-MONOMER Uniprot:Q5HS92
Length = 93
Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLKN 90
+ ++T P +K +K VL+ +G + +L M+GK K+ G L + +YKK YV L
Sbjct: 25 VVIQTSPKMTKTGLKAVLKEYFGVTPKSINSLRMDGKIKRFRGRLGQRNNYKKFYVKLPE 84
Query: 91 PLSL 94
+SL
Sbjct: 85 GVSL 88
>UNIPROTKB|A8MVT4 [details] [associations]
symbol:MRPL23 "39S ribosomal protein L23, mitochondrial"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR012677 InterPro:IPR012678
InterPro:IPR013025 Pfam:PF00276 GO:GO:0000166 GO:GO:0006412
Gene3D:3.30.70.330 GO:GO:0005840 GO:GO:0003735 EMBL:AC051649
SUPFAM:SSF54189 HOGENOM:HOG000231896 HOVERGEN:HBG052914
HGNC:HGNC:10322 IPI:IPI00853031 ProteinModelPortal:A8MVT4
SMR:A8MVT4 STRING:A8MVT4 PRIDE:A8MVT4 Ensembl:ENST00000397294
ArrayExpress:A8MVT4 Bgee:A8MVT4 Uniprot:A8MVT4
Length = 166
Score = 107 (42.7 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 26/78 (33%), Positives = 39/78 (50%)
Query: 13 TNLPIKLLMPNTFQNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRG 72
TN I+L+ P Q + + ++++++ LE +Y V VRT G K+R
Sbjct: 22 TNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGIYNVPVAAVRTRVQHGSNKRRD 81
Query: 73 --GLLIAKPDYKKAYVTL 88
+ I KPDYK AYV L
Sbjct: 82 HRNVRIKKPDYKVAYVQL 99
>UNIPROTKB|A8MYK1 [details] [associations]
symbol:MRPL23 "39S ribosomal protein L23, mitochondrial"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR012677 InterPro:IPR012678
InterPro:IPR013025 Pfam:PF00276 GO:GO:0000166 GO:GO:0006412
Gene3D:3.30.70.330 GO:GO:0005840 GO:GO:0003735 EMBL:AC051649
SUPFAM:SSF54189 HOGENOM:HOG000231896 HOVERGEN:HBG052914
HGNC:HGNC:10322 IPI:IPI00853201 ProteinModelPortal:A8MYK1
SMR:A8MYK1 STRING:A8MYK1 Ensembl:ENST00000397297
ArrayExpress:A8MYK1 Bgee:A8MYK1 Uniprot:A8MYK1
Length = 191
Score = 107 (42.7 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 26/78 (33%), Positives = 39/78 (50%)
Query: 13 TNLPIKLLMPNTFQNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRG 72
TN I+L+ P Q + + ++++++ LE +Y V VRT G K+R
Sbjct: 22 TNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGIYNVPVAAVRTRVQHGSNKRRD 81
Query: 73 --GLLIAKPDYKKAYVTL 88
+ I KPDYK AYV L
Sbjct: 82 HRNVRIKKPDYKVAYVQL 99
>TIGR_CMR|CBU_0240 [details] [associations]
symbol:CBU_0240 "ribosomal protein L23" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR012677 InterPro:IPR012678 InterPro:IPR013025
Pfam:PF00276 GO:GO:0000166 GO:GO:0006412 Gene3D:3.30.70.330
GO:GO:0005840 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0003735
GO:GO:0019843 SUPFAM:SSF54189 eggNOG:COG0089 PROSITE:PS00050
HAMAP:MF_01369_B KO:K02892 ProtClustDB:PRK05738 HSSP:Q9RXK0
HOGENOM:HOG000231364 RefSeq:NP_819284.1 ProteinModelPortal:Q83ES2
GeneID:1208121 KEGG:cbu:CBU_0240 PATRIC:17929173 OMA:QISEKAT
BioCyc:CBUR227377:GJ7S-246-MONOMER Uniprot:Q83ES2
Length = 95
Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 30 EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTL 88
+ + +P A+K EIKR +E + V VRT N++GK + + + ++KKAYV L
Sbjct: 25 QYVFEVMPDATKPEIKRAVEKQFNVTVKSVRTCNVKGKTTRFRQVRGRRKNWKKAYVML 83
>UNIPROTKB|Q32PA7 [details] [associations]
symbol:MRPL23 "Mitochondrial ribosomal protein L23"
species:9913 "Bos taurus" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 InterPro:IPR012678 InterPro:IPR013025
Pfam:PF00276 GO:GO:0005739 GO:GO:0000166 GO:GO:0006412
Gene3D:3.30.70.330 GO:GO:0005840 GO:GO:0003735 SUPFAM:SSF54189
eggNOG:NOG309821 GeneTree:ENSGT00390000007739 HOGENOM:HOG000231896
CTD:6150 HOVERGEN:HBG052914 OrthoDB:EOG4N5VZ3 EMBL:DAAA02063737
EMBL:BC108192 IPI:IPI00710133 IPI:IPI00824828 RefSeq:NP_001071352.1
UniGene:Bt.3366 STRING:Q32PA7 Ensembl:ENSBTAT00000000112
GeneID:508825 KEGG:bta:508825 InParanoid:Q32PA7 NextBio:20868694
Uniprot:Q32PA7
Length = 106
Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 40 SKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRG--GLLIAKPDYKKAYVTLKNPLSLS-E 96
++++++ LE +Y V VRT G ++R + I +PDYK AYV L + + +
Sbjct: 2 TRVDLRNYLERVYNVPVAAVRTRVQHGSNRRRDHRNVRIKQPDYKVAYVQLAHGQTFTFP 61
Query: 97 DLFP 100
DLFP
Sbjct: 62 DLFP 65
>TIGR_CMR|ECH_0411 [details] [associations]
symbol:ECH_0411 "ribosomal protein L23" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] InterPro:IPR012677 InterPro:IPR012678
InterPro:IPR013025 Pfam:PF00276 GO:GO:0000166 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006412 Gene3D:3.30.70.330
GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 SUPFAM:SSF54189
HAMAP:MF_01369_B KO:K02892 ProtClustDB:PRK05738
HOGENOM:HOG000231364 eggNOG:NOG122510 RefSeq:YP_507229.1
ProteinModelPortal:Q2GH54 STRING:Q2GH54 GeneID:3927520
KEGG:ech:ECH_0411 PATRIC:20576299 OMA:RKKVYFS
BioCyc:ECHA205920:GJNR-412-MONOMER Uniprot:Q2GH54
Length = 96
Score = 86 (35.3 bits), Expect = 0.00072, P = 0.00072
Identities = 19/63 (30%), Positives = 34/63 (53%)
Query: 26 QNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAY 85
+ + A+ A K IK+ L+ ++G +V ++ LN +GKKK G+ + + KK Y
Sbjct: 22 EKFNKYAVYVSVDADKQRIKKALKVVFGLDVIRINILNQKGKKKYFKGVFGRRKNRKKVY 81
Query: 86 VTL 88
+L
Sbjct: 82 FSL 84
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.134 0.381 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 169 159 0.00091 106 3 11 22 0.40 32
30 0.43 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 23
No. of states in DFA: 542 (58 KB)
Total size of DFA: 128 KB (2083 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 14.83u 0.10s 14.93t Elapsed: 00:00:01
Total cpu time: 14.83u 0.10s 14.93t Elapsed: 00:00:01
Start: Fri May 10 03:38:11 2013 End: Fri May 10 03:38:12 2013