BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030915
(169 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q605B4|RL23_METCA 50S ribosomal protein L23 OS=Methylococcus capsulatus (strain
ATCC 33009 / NCIMB 11132 / Bath) GN=rplW PE=3 SV=1
Length = 97
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 41/60 (68%)
Query: 30 EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLK 89
+ + P+ASK++IK +E ++G +VD VR LN++GK K+ G + + D+KKAYV LK
Sbjct: 28 QFVFRVKPAASKLQIKSAVELMFGVKVDSVRILNVKGKSKRFGRFMGQRSDWKKAYVKLK 87
>sp|B5FWC0|RM23_OTOGA 39S ribosomal protein L23, mitochondrial OS=Otolemur garnettii
GN=MRPL23 PE=3 SV=1
Length = 153
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 66/132 (50%), Gaps = 12/132 (9%)
Query: 13 TNLPIKLLMPNTFQNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRG 72
TN I+L+ P T Q + + ++++++ LE +Y V VRT G +KR
Sbjct: 22 TNFFIQLVRPGTAQPEDTVQFRIPMEMTRVDLRNYLERIYNVPVAAVRTRVQHGSHRKRD 81
Query: 73 --GLLIAKPDYKKAYVTLKNPLSLS-EDLFPIRVIQDEKERMRKEKESSIVEEGKKHWLD 129
+ I KPDYK AYV L + + + DLFP EK+ E S V+E + ++
Sbjct: 82 HRNVRIKKPDYKVAYVQLAHGQTFTFPDLFP------EKD---PRLEGSSVDEAQSTFMA 132
Query: 130 GKQVVKGNNNER 141
+Q +G++ +R
Sbjct: 133 DEQQRQGSDPQR 144
>sp|Q0I161|RL23_HAES1 50S ribosomal protein L23 OS=Haemophilus somnus (strain 129Pt)
GN=rplW PE=3 SV=1
Length = 101
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 41/64 (64%)
Query: 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLKN 90
I K A+K+EI +E L+ +VD VRT+ ++GK K+RG + + D+KKAYVTL+
Sbjct: 30 IVFKVALDANKVEIANAVEQLFEVKVDSVRTVVVKGKTKRRGAKMGQRSDWKKAYVTLQE 89
Query: 91 PLSL 94
SL
Sbjct: 90 GQSL 93
>sp|A0KF23|RL23_AERHH 50S ribosomal protein L23 OS=Aeromonas hydrophila subsp.
hydrophila (strain ATCC 7966 / NCIB 9240) GN=rplW PE=3
SV=1
Length = 100
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 38/59 (64%)
Query: 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLK 89
I K A+K E+K + L+ EV+ VRTLNM+GK K+ G + + D+KKAYVTLK
Sbjct: 30 IVFKVAVDATKAEVKAAVAKLFEVEVETVRTLNMKGKTKRAGARVGRRSDWKKAYVTLK 88
>sp|A4ST04|RL23_AERS4 50S ribosomal protein L23 OS=Aeromonas salmonicida (strain A449)
GN=rplW PE=3 SV=1
Length = 100
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 38/59 (64%)
Query: 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLK 89
I K A+K E+K + L+ EV+ VRTLNM+GK K+ G + + D+KKAYVTLK
Sbjct: 30 IVFKIAVDATKAEVKAAVAKLFEVEVETVRTLNMKGKTKRSGARVGRRSDWKKAYVTLK 88
>sp|P55839|RL23_AGGAC 50S ribosomal protein L23 OS=Aggregatibacter
actinomycetemcomitans GN=rplW PE=3 SV=1
Length = 100
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%)
Query: 22 PNTFQNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDY 81
N + I K A+K+EI +E L+ +VD VRT+ ++GK K+RG + + D+
Sbjct: 20 TNNAEKSNTIVFKVALDANKVEITNAVEQLFEVKVDSVRTVVVKGKTKRRGAKIGRRSDW 79
Query: 82 KKAYVTLKNPLSL 94
KKAYVTL+ SL
Sbjct: 80 KKAYVTLQEGQSL 92
>sp|Q5QXX9|RL23_IDILO 50S ribosomal protein L23 OS=Idiomarina loihiensis (strain ATCC
BAA-735 / DSM 15497 / L2-TR) GN=rplW PE=3 SV=1
Length = 100
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 39/67 (58%)
Query: 22 PNTFQNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDY 81
NT +N + K A+K EIK +E L+ EV VRT+N++GK K+ G + D+
Sbjct: 21 TNTAENNNTVVFKVAVDATKTEIKAAVEKLFEVEVKNVRTVNVKGKTKRTGSRFGKRSDW 80
Query: 82 KKAYVTL 88
KKAYV L
Sbjct: 81 KKAYVAL 87
>sp|C5BGM3|RL23_EDWI9 50S ribosomal protein L23 OS=Edwardsiella ictaluri (strain
93-146) GN=rplW PE=3 SV=1
Length = 100
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 41/64 (64%)
Query: 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLKN 90
I LK A+K EIK ++ L+ EVD VRTL ++GK K+ G + + D+KKAYVTLK
Sbjct: 30 IVLKVATDATKAEIKAAVKKLFEVEVDTVRTLVVKGKVKRHGQRIGRRSDWKKAYVTLKE 89
Query: 91 PLSL 94
+L
Sbjct: 90 GQNL 93
>sp|Q0ABH3|RL23_ALHEH 50S ribosomal protein L23 OS=Alkalilimnicola ehrlichei (strain
MLHE-1) GN=rplW PE=3 SV=1
Length = 99
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 40/61 (65%)
Query: 30 EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLK 89
E+ K A K EI++ +E L+ +V VRT+ M+GK+K+ G L +PD+KKAYVTL+
Sbjct: 28 EVVFKVAVDARKAEIRQAVEQLFDVKVRDVRTVKMKGKRKRFGRLEGKRPDWKKAYVTLE 87
Query: 90 N 90
Sbjct: 88 E 88
>sp|Q9CL34|RL23_PASMU 50S ribosomal protein L23 OS=Pasteurella multocida (strain Pm70)
GN=rplW PE=3 SV=1
Length = 100
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%)
Query: 22 PNTFQNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDY 81
N + I K A+K+EI +E L+ +VD VRT+ ++GK K+ G + + D+
Sbjct: 21 TNNAEKSNTIVFKVALDANKVEIANAVEQLFEVKVDSVRTVVVKGKTKRHGARMGRRSDW 80
Query: 82 KKAYVTLKNPLSL 94
KKAYVTL+ SL
Sbjct: 81 KKAYVTLQEGQSL 93
>sp|Q2NQM4|RL23_SODGM 50S ribosomal protein L23 OS=Sodalis glossinidius (strain
morsitans) GN=rplW PE=3 SV=1
Length = 100
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 40/64 (62%)
Query: 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLKN 90
I LK A+K EIK + L+ EV+ VRTL ++GK K+ G + + D+KKAYVTLK
Sbjct: 30 IVLKVAKDATKAEIKAAVHKLFEVEVNDVRTLVVKGKTKRHGQRIGRRSDWKKAYVTLKE 89
Query: 91 PLSL 94
+L
Sbjct: 90 GQNL 93
>sp|C4L7T2|RL23_TOLAT 50S ribosomal protein L23 OS=Tolumonas auensis (strain DSM 9187 /
TA4) GN=rplW PE=3 SV=1
Length = 101
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 39/63 (61%)
Query: 26 QNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAY 85
+ + I K A+K EIK +E L+ +V+ VRTLN+ GK K+ G + + D+KKAY
Sbjct: 25 EKLNTIVFKVATDATKAEIKAAVEKLFEVKVEAVRTLNVVGKTKRTGSRMGRRSDWKKAY 84
Query: 86 VTL 88
VTL
Sbjct: 85 VTL 87
>sp|Q15YN7|RL23_PSEA6 50S ribosomal protein L23 OS=Pseudoalteromonas atlantica (strain
T6c / ATCC BAA-1087) GN=rplW PE=3 SV=1
Length = 100
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLK 89
+ K + A+K EIK +E L+ EV+ VRT+N++GK K+ G + D+KKAYV LK
Sbjct: 30 VVFKVLKDANKEEIKAAVEKLFEVEVNSVRTVNVKGKTKRHGASFGKRKDWKKAYVVLK 88
>sp|Q3IF23|RL23_PSEHT 50S ribosomal protein L23 OS=Pseudoalteromonas haloplanktis
(strain TAC 125) GN=rplW PE=3 SV=1
Length = 100
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 38/64 (59%)
Query: 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLKN 90
I K ++K E+K +E L+ EV VRTLN++GK K+ G + D+KKAYVTLK
Sbjct: 30 IVFKVAKDSTKAEVKAAVEKLFEVEVTGVRTLNVKGKTKRTGARFGRRNDWKKAYVTLKE 89
Query: 91 PLSL 94
L
Sbjct: 90 GSEL 93
>sp|B4F1I6|RL23_PROMH 50S ribosomal protein L23 OS=Proteus mirabilis (strain HI4320)
GN=rplW PE=3 SV=1
Length = 100
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 40/64 (62%)
Query: 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLKN 90
I LK A+K EIK ++ L+ EV+ V TL M+GK K+ G + + D+KKAYVTLK
Sbjct: 30 IVLKVAKDATKAEIKAAVQKLFEVEVESVNTLLMKGKVKRHGQRIGRRSDWKKAYVTLKE 89
Query: 91 PLSL 94
+L
Sbjct: 90 GQNL 93
>sp|Q0VSK1|RL23_ALCBS 50S ribosomal protein L23 OS=Alcanivorax borkumensis (strain SK2
/ ATCC 700651 / DSM 11573) GN=rplW PE=3 SV=1
Length = 98
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 26 QNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAY 85
QN T K ASK+EIK+ +E+L+ +V+ VRT NM+GK K G + + D+KKAY
Sbjct: 25 QNNT-FVFKVAKDASKLEIKKAVEALFEVKVEAVRTANMKGKSKFFGRVAGKRVDWKKAY 83
Query: 86 VTL 88
V+L
Sbjct: 84 VSL 86
>sp|Q7VKD4|RL23_HAEDU 50S ribosomal protein L23 OS=Haemophilus ducreyi (strain 35000HP
/ ATCC 700724) GN=rplW PE=3 SV=1
Length = 101
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 40/64 (62%)
Query: 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLKN 90
I K A+K+E+ ++ L+ +VD VRT+ ++GK K+ G + + D+KKAYVTL+
Sbjct: 30 IVFKVALDANKVEVANAVQELFEVKVDSVRTVVVKGKTKRHGARMGRRSDWKKAYVTLQE 89
Query: 91 PLSL 94
SL
Sbjct: 90 GQSL 93
>sp|Q12SV7|RL23_SHEDO 50S ribosomal protein L23 OS=Shewanella denitrificans (strain
OS217 / ATCC BAA-1090 / DSM 15013) GN=rplW PE=3 SV=1
Length = 100
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 44/77 (57%), Gaps = 7/77 (9%)
Query: 19 LLMPNTFQNITEIALKT-------IPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKR 71
+L P+ + T +A KT A+K EIK + L+ EVD VRTL +GK K+
Sbjct: 11 ILAPHISEKSTVVAEKTNTVVFRVAIDATKAEIKAAVAKLFEVEVDSVRTLVNKGKTKRT 70
Query: 72 GGLLIAKPDYKKAYVTL 88
GG + + D+KKAYVTL
Sbjct: 71 GGRVGRRSDWKKAYVTL 87
>sp|A1ALU3|RL23_PELPD 50S ribosomal protein L23 OS=Pelobacter propionicus (strain DSM
2379) GN=rplW PE=3 SV=1
Length = 94
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 39 ASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLKNPLSLSEDL 98
A+KIEIK+ +E+L+ +VD VRT+N+ GK K+ G ++KKA+VTL SL D
Sbjct: 34 ANKIEIKQAVETLFKVKVDSVRTVNVAGKVKRFGRNFGKHSNWKKAFVTLSEGQSL--DF 91
Query: 99 FPI 101
F +
Sbjct: 92 FEV 94
>sp|A1WVC0|RL23_HALHL 50S ribosomal protein L23 OS=Halorhodospira halophila (strain DSM
244 / SL1) GN=rplW PE=3 SV=1
Length = 98
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 39/59 (66%)
Query: 30 EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTL 88
++ + P A+K EIK +E L+ +V VRT+N +GK+K+ G + + D+KKAYVTL
Sbjct: 28 QVVFQVAPDANKKEIKAAVEKLFDVQVTGVRTVNAKGKRKRFGMIRGRRRDWKKAYVTL 86
>sp|A5WCJ2|RL23_PSYWF 50S ribosomal protein L23 OS=Psychrobacter sp. (strain PRwf-1)
GN=rplW PE=3 SV=1
Length = 116
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Query: 33 LKTIPSASKIEIKRVLESLY-GFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLK 89
K +A+K EIK+ +E ++ G EV KV TLN++GK K+ G + + DYKKAYVTLK
Sbjct: 31 FKVDNNATKREIKKAVELMFEGVEVTKVNTLNVKGKTKRFGRTVGRRNDYKKAYVTLK 88
>sp|Q1QDI4|RL23_PSYCK 50S ribosomal protein L23 OS=Psychrobacter cryohalolentis (strain
K5) GN=rplW PE=3 SV=1
Length = 116
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 39/52 (75%), Gaps = 1/52 (1%)
Query: 39 ASKIEIKRVLESLY-GFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLK 89
A+K+E+K+ +E ++ G EV KV TLN++GK K+ G + + DYKKAYVTLK
Sbjct: 37 ATKLEVKKAVEMMFEGVEVLKVNTLNVKGKTKRFGKSIGRRNDYKKAYVTLK 88
>sp|Q4FUF4|RL23_PSYA2 50S ribosomal protein L23 OS=Psychrobacter arcticus (strain DSM
17307 / 273-4) GN=rplW PE=3 SV=1
Length = 116
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 39/52 (75%), Gaps = 1/52 (1%)
Query: 39 ASKIEIKRVLESLY-GFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLK 89
A+K+E+K+ +E ++ G EV KV TLN++GK K+ G + + DYKKAYVTLK
Sbjct: 37 ATKLEVKKAVEMMFEGVEVLKVNTLNVKGKTKRFGKSIGRRNDYKKAYVTLK 88
>sp|O35972|RM23_MOUSE 39S ribosomal protein L23, mitochondrial OS=Mus musculus GN=Mrpl23
PE=2 SV=1
Length = 146
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 7/123 (5%)
Query: 13 TNLPIKLLMPNTFQNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRG 72
TN I+L+ P T Q + + ++++++ LE +Y V VRT G ++R
Sbjct: 22 TNFFIQLVRPGTAQPEDTVQFRIPMEMTRVDLRNYLEQIYNVPVAAVRTRVQHGSNRRRD 81
Query: 73 --GLLIAKPDYKKAYVTLKNPLSLS-EDLFP---IRVIQDEKERMRKEKESSIVE-EGKK 125
+ I KPDYK AYV L + + + DLFP R + +E + ++++SS + G
Sbjct: 82 HKNVRIKKPDYKVAYVQLAHGQTFTFPDLFPEKDPRSPEPLEEELPQQRQSSDLRCPGIP 141
Query: 126 HWL 128
W
Sbjct: 142 SWF 144
>sp|P69964|RL23_YERPS 50S ribosomal protein L23 OS=Yersinia pseudotuberculosis serotype
I (strain IP32953) GN=rplW PE=3 SV=1
Length = 100
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%)
Query: 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLKN 90
I LK A+K EIK ++ L+ EV+ V TL ++GK K+ G + + D+KKAYVTLK
Sbjct: 30 IVLKVAKDATKAEIKAAVQKLFEVEVEDVNTLLVKGKSKRHGQRVGRRSDWKKAYVTLKE 89
Query: 91 PLSL 94
+L
Sbjct: 90 GQNL 93
>sp|Q1CCU6|RL23_YERPN 50S ribosomal protein L23 OS=Yersinia pestis bv. Antiqua (strain
Nepal516) GN=rplW PE=3 SV=1
Length = 100
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%)
Query: 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLKN 90
I LK A+K EIK ++ L+ EV+ V TL ++GK K+ G + + D+KKAYVTLK
Sbjct: 30 IVLKVAKDATKAEIKAAVQKLFEVEVEDVNTLLVKGKSKRHGQRVGRRSDWKKAYVTLKE 89
Query: 91 PLSL 94
+L
Sbjct: 90 GQNL 93
>sp|P69963|RL23_YERPE 50S ribosomal protein L23 OS=Yersinia pestis GN=rplW PE=3 SV=1
Length = 100
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%)
Query: 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLKN 90
I LK A+K EIK ++ L+ EV+ V TL ++GK K+ G + + D+KKAYVTLK
Sbjct: 30 IVLKVAKDATKAEIKAAVQKLFEVEVEDVNTLLVKGKSKRHGQRVGRRSDWKKAYVTLKE 89
Query: 91 PLSL 94
+L
Sbjct: 90 GQNL 93
>sp|Q1C2U9|RL23_YERPA 50S ribosomal protein L23 OS=Yersinia pestis bv. Antiqua (strain
Antiqua) GN=rplW PE=3 SV=1
Length = 100
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%)
Query: 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLKN 90
I LK A+K EIK ++ L+ EV+ V TL ++GK K+ G + + D+KKAYVTLK
Sbjct: 30 IVLKVAKDATKAEIKAAVQKLFEVEVEDVNTLLVKGKSKRHGQRVGRRSDWKKAYVTLKE 89
Query: 91 PLSL 94
+L
Sbjct: 90 GQNL 93
>sp|P0C2N0|RL23_YEREN 50S ribosomal protein L23 OS=Yersinia enterocolitica GN=rplW PE=1
SV=1
Length = 100
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%)
Query: 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLKN 90
I LK A+K EIK ++ L+ EV+ V TL ++GK K+ G + + D+KKAYVTLK
Sbjct: 30 IVLKVAKDATKAEIKAAVQKLFEVEVEDVNTLLVKGKSKRHGQRVGRRSDWKKAYVTLKE 89
Query: 91 PLSL 94
+L
Sbjct: 90 GQNL 93
>sp|A1JS44|RL23_YERE8 50S ribosomal protein L23 OS=Yersinia enterocolitica serotype O:8
/ biotype 1B (strain 8081) GN=rplW PE=3 SV=1
Length = 100
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%)
Query: 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLKN 90
I LK A+K EIK ++ L+ EV+ V TL ++GK K+ G + + D+KKAYVTLK
Sbjct: 30 IVLKVAKDATKAEIKAAVQKLFEVEVEDVNTLLVKGKSKRHGQRVGRRSDWKKAYVTLKE 89
Query: 91 PLSL 94
+L
Sbjct: 90 GQNL 93
>sp|Q89A70|RL23_BUCBP 50S ribosomal protein L23 OS=Buchnera aphidicola subsp. Baizongia
pistaciae (strain Bp) GN=rplW PE=3 SV=1
Length = 100
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 40/63 (63%)
Query: 27 NITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYV 86
N + + +K A+K+EIKR +++++ V V TL ++GK K++ + ++KKAYV
Sbjct: 26 NFSTVIIKVSICATKLEIKRAVQNMFNVAVKNVNTLVVQGKCKRKKSRITCSSNWKKAYV 85
Query: 87 TLK 89
TLK
Sbjct: 86 TLK 88
>sp|Q487Z5|RL23_COLP3 50S ribosomal protein L23 OS=Colwellia psychrerythraea (strain
34H / ATCC BAA-681) GN=rplW PE=3 SV=1
Length = 100
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 19 LLMPNTFQNITEIA-------LKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKR 71
LL PN + T A K A+K EIK +E L+ V+ V TLN++GK K+
Sbjct: 11 LLAPNISEKATTAAEANNTVVFKVATDATKAEIKAAVEKLFEVTVEGVNTLNVKGKVKRT 70
Query: 72 GGLLIAKPDYKKAYVTL 88
G + D+KKAYVTL
Sbjct: 71 GARFGRRNDWKKAYVTL 87
>sp|Q9HWD7|RL23_PSEAE 50S ribosomal protein L23 OS=Pseudomonas aeruginosa (strain ATCC
15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=rplW PE=3
SV=1
Length = 99
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 40/61 (65%)
Query: 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTL 88
++ K A+K+EIK+ +ESL+ +V +V TLN++GK K+ L + D+KKAY+ L
Sbjct: 27 SQFVFKVATDATKLEIKKAVESLFSVKVQRVTTLNVKGKTKRTARGLGKRNDWKKAYIAL 86
Query: 89 K 89
+
Sbjct: 87 Q 87
>sp|Q02T78|RL23_PSEAB 50S ribosomal protein L23 OS=Pseudomonas aeruginosa (strain
UCBPP-PA14) GN=rplW PE=3 SV=1
Length = 99
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 40/61 (65%)
Query: 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTL 88
++ K A+K+EIK+ +ESL+ +V +V TLN++GK K+ L + D+KKAY+ L
Sbjct: 27 SQFVFKVATDATKLEIKKAVESLFSVKVQRVTTLNVKGKTKRTARGLGKRNDWKKAYIAL 86
Query: 89 K 89
+
Sbjct: 87 Q 87
>sp|B7V646|RL23_PSEA8 50S ribosomal protein L23 OS=Pseudomonas aeruginosa (strain
LESB58) GN=rplW PE=3 SV=1
Length = 99
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 40/61 (65%)
Query: 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTL 88
++ K A+K+EIK+ +ESL+ +V +V TLN++GK K+ L + D+KKAY+ L
Sbjct: 27 SQFVFKVATDATKLEIKKAVESLFSVKVQRVTTLNVKGKTKRTARGLGKRNDWKKAYIAL 86
Query: 89 K 89
+
Sbjct: 87 Q 87
>sp|A6UZJ0|RL23_PSEA7 50S ribosomal protein L23 OS=Pseudomonas aeruginosa (strain PA7)
GN=rplW PE=3 SV=1
Length = 99
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 40/61 (65%)
Query: 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTL 88
++ K A+K+EIK+ +ESL+ +V +V TLN++GK K+ L + D+KKAY+ L
Sbjct: 27 SQFVFKVATDATKLEIKKAVESLFSVKVQRVTTLNVKGKTKRTARGLGKRNDWKKAYIAL 86
Query: 89 K 89
+
Sbjct: 87 Q 87
>sp|A1T0E0|RL23_PSYIN 50S ribosomal protein L23 OS=Psychromonas ingrahamii (strain 37)
GN=rplW PE=3 SV=1
Length = 99
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 40/63 (63%)
Query: 26 QNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAY 85
+N + K +A+K EIK ++ L+ EV VRTLN++GK K+ G + + D+KKAY
Sbjct: 25 ENHNTMVFKVAGTATKAEIKAAVQKLFEVEVTGVRTLNVKGKTKRTGQRVGRRSDWKKAY 84
Query: 86 VTL 88
V+L
Sbjct: 85 VSL 87
>sp|A5UDU5|RL23_HAEIE 50S ribosomal protein L23 OS=Haemophilus influenzae (strain
PittEE) GN=rplW PE=3 SV=1
Length = 109
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%)
Query: 22 PNTFQNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDY 81
N + + LK A+K EI + L+ +VD VRT+ ++GK K+RG + + D+
Sbjct: 20 TNNAEKSNTVVLKVALDANKAEIAAAVAQLFEVKVDSVRTVVVKGKTKRRGNKMGRRSDW 79
Query: 82 KKAYVTL 88
KKAYVTL
Sbjct: 80 KKAYVTL 86
>sp|Q16540|RM23_HUMAN 39S ribosomal protein L23, mitochondrial OS=Homo sapiens GN=MRPL23
PE=1 SV=1
Length = 153
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 13 TNLPIKLLMPNTFQNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRG 72
TN I+L+ P Q + + ++++++ LE +Y V VRT G K+R
Sbjct: 22 TNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGIYNVPVAAVRTRVQHGSNKRRD 81
Query: 73 --GLLIAKPDYKKAYVTLKNPLSLS-EDLFP 100
+ I KPDYK AYV L + + + DLFP
Sbjct: 82 HRNVRIKKPDYKVAYVQLAHGQTFTFPDLFP 112
>sp|Q6CZX2|RL23_ERWCT 50S ribosomal protein L23 OS=Erwinia carotovora subsp.
atroseptica (strain SCRI 1043 / ATCC BAA-672) GN=rplW
PE=3 SV=1
Length = 100
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%)
Query: 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLKN 90
I LK A+K EIK ++ L+ EV+ V TL ++GK K+ G + + D+KKAYVTLK
Sbjct: 30 IVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKTKRHGQRIGRRSDWKKAYVTLKE 89
Query: 91 PLSL 94
+L
Sbjct: 90 GQNL 93
>sp|P44361|RL23_HAEIN 50S ribosomal protein L23 OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=rplW PE=3 SV=1
Length = 99
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%)
Query: 22 PNTFQNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDY 81
N + + LK A+K EI + L+ +VD VRT+ ++GK K+RG + + D+
Sbjct: 20 TNNAEKSNTVVLKVALDANKAEIAAAVAQLFEVKVDSVRTVVVKGKTKRRGNKMGRRSDW 79
Query: 82 KKAYVTL 88
KKAYVTL
Sbjct: 80 KKAYVTL 86
>sp|A5UHT2|RL23_HAEIG 50S ribosomal protein L23 OS=Haemophilus influenzae (strain
PittGG) GN=rplW PE=3 SV=1
Length = 99
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%)
Query: 22 PNTFQNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDY 81
N + + LK A+K EI + L+ +VD VRT+ ++GK K+RG + + D+
Sbjct: 20 TNNAEKSNTVVLKVALDANKAEIAAAVAQLFEVKVDSVRTVVVKGKTKRRGNKMGRRSDW 79
Query: 82 KKAYVTL 88
KKAYVTL
Sbjct: 80 KKAYVTL 86
>sp|Q4QMC0|RL23_HAEI8 50S ribosomal protein L23 OS=Haemophilus influenzae (strain
86-028NP) GN=rplW PE=3 SV=1
Length = 99
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%)
Query: 22 PNTFQNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDY 81
N + + LK A+K EI + L+ +VD VRT+ ++GK K+RG + + D+
Sbjct: 20 TNNAEKSNTVVLKVALDANKAEIAAAVAQLFEVKVDSVRTVVVKGKTKRRGNKMGRRSDW 79
Query: 82 KKAYVTL 88
KKAYVTL
Sbjct: 80 KKAYVTL 86
>sp|Q7MYF3|RL23_PHOLL 50S ribosomal protein L23 OS=Photorhabdus luminescens subsp.
laumondii (strain TT01) GN=rplW PE=3 SV=1
Length = 100
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 38/59 (64%)
Query: 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLK 89
I LK A+K EIK ++ L+ EV+ V TL ++GK K+ G + + D+KKAYVTLK
Sbjct: 30 IVLKVAKDATKAEIKAAVQKLFEVEVEGVNTLLVKGKTKRHGQRIGRRSDWKKAYVTLK 88
>sp|Q63750|RM23_RAT 39S ribosomal protein L23, mitochondrial OS=Rattus norvegicus
GN=Mrpl23 PE=2 SV=1
Length = 146
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 13 TNLPIKLLMPNTFQNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRG 72
TN I+L+ P T Q + + ++++++ LE +Y V VRT G ++R
Sbjct: 22 TNFFIQLVRPGTAQPEDTVQFRIPMEMTRVDLRNYLEQIYNVPVAAVRTRVQHGSNRRRD 81
Query: 73 --GLLIAKPDYKKAYVTLKNPLSLS-EDLFP 100
+ I KPDYK AYV L + + + DLFP
Sbjct: 82 HKNVRIKKPDYKVAYVQLAHGQTFTFPDLFP 112
>sp|A4VHN2|RL23_PSEU5 50S ribosomal protein L23 OS=Pseudomonas stutzeri (strain A1501)
GN=rplW PE=3 SV=1
Length = 99
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 7/78 (8%)
Query: 19 LLMPNTFQNITEIA-------LKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKR 71
LL P+ + T +A K A+K+EIK+ +ESL+ +V V TLN++GK K+
Sbjct: 10 LLGPHVSEKATVLADSKKQFVFKVATDATKLEIKKAVESLFDVKVAAVNTLNVQGKTKRT 69
Query: 72 GGLLIAKPDYKKAYVTLK 89
L + D+KKAY+ L+
Sbjct: 70 ARGLGKRNDWKKAYIALQ 87
>sp|Q3SLP7|RL23_THIDA 50S ribosomal protein L23 OS=Thiobacillus denitrificans (strain
ATCC 25259) GN=rplW PE=3 SV=1
Length = 101
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 40/62 (64%)
Query: 28 ITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVT 87
+ ++ + +P A+K EI + SL+ EV V+ LN++GK K+ G ++ + +KKAYVT
Sbjct: 29 LNQVVFRVLPDATKQEIGAAVASLFKVEVAGVQVLNVKGKVKRSGRVMGRRDSWKKAYVT 88
Query: 88 LK 89
LK
Sbjct: 89 LK 90
>sp|Q1ISC0|RL23_KORVE 50S ribosomal protein L23 OS=Koribacter versatilis (strain
Ellin345) GN=rplW PE=3 SV=1
Length = 98
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 35/53 (66%)
Query: 38 SASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLKN 90
+A+K EIK ++ + +VD VRT N GK+++RG +PD+KKAYV LK
Sbjct: 35 NATKTEIKEAVQKTFKVKVDTVRTANFVGKERRRGKFSGYRPDWKKAYVRLKT 87
>sp|A8G1E6|RL23_SHESH 50S ribosomal protein L23 OS=Shewanella sediminis (strain
HAW-EB3) GN=rplW PE=3 SV=1
Length = 99
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%)
Query: 26 QNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAY 85
+N + + A+K E+K + L+ EVD VRTL +GK K+ G + + D+KKAY
Sbjct: 25 ENDNTVVFRVAIDATKAEVKAAVAQLFEVEVDSVRTLVNKGKTKRTGARMGRRVDWKKAY 84
Query: 86 VTLKN 90
VTL +
Sbjct: 85 VTLAD 89
>sp|Q3YWU1|RL23_SHISS 50S ribosomal protein L23 OS=Shigella sonnei (strain Ss046)
GN=rplW PE=3 SV=1
Length = 100
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 40/64 (62%)
Query: 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLKN 90
I LK A+K EIK ++ L+ EV+ V TL ++GK K+ G + + D+KKAYVTLK
Sbjct: 30 IVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKE 89
Query: 91 PLSL 94
+L
Sbjct: 90 GQNL 93
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.133 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,994,360
Number of Sequences: 539616
Number of extensions: 2561518
Number of successful extensions: 8666
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 112
Number of HSP's that attempted gapping in prelim test: 8049
Number of HSP's gapped (non-prelim): 704
length of query: 169
length of database: 191,569,459
effective HSP length: 109
effective length of query: 60
effective length of database: 132,751,315
effective search space: 7965078900
effective search space used: 7965078900
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)