Query 030915
Match_columns 169
No_of_seqs 138 out of 1123
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 10:01:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030915.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030915hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tve_T 50S ribosomal protein L 100.0 4.4E-29 1.5E-33 183.7 8.3 86 13-100 3-91 (92)
2 2zjr_Q 50S ribosomal protein L 100.0 6.3E-29 2.1E-33 183.9 7.9 88 12-101 3-93 (95)
3 3r8s_T 50S ribosomal protein L 99.9 2E-28 6.8E-33 180.6 6.4 83 12-94 7-93 (93)
4 1vq8_S 50S ribosomal protein L 99.9 6.4E-23 2.2E-27 149.0 6.3 73 13-100 3-80 (85)
5 3j21_T 50S ribosomal protein L 99.9 9.7E-22 3.3E-26 143.1 7.2 70 12-94 3-76 (86)
6 2zkr_s 60S ribosomal protein L 99.8 1.8E-21 6.2E-26 155.1 5.8 76 9-99 70-150 (156)
7 3u5e_X 60S ribosomal protein L 99.8 2.5E-20 8.5E-25 146.6 5.5 72 9-93 56-131 (142)
8 3iz5_X 60S ribosomal protein L 99.8 6.5E-20 2.2E-24 145.5 7.2 72 9-93 66-141 (152)
9 3bbo_V Ribosomal protein L23; 99.8 5E-21 1.7E-25 156.6 0.3 77 9-100 108-189 (198)
10 4a17_R RPL23A, 60S ribosomal p 99.8 4.9E-20 1.7E-24 145.9 5.7 71 10-93 65-139 (150)
11 4dbg_A Ranbp-type and C3HC4-ty 74.7 4.4 0.00015 29.6 4.6 39 28-67 36-74 (105)
12 3a9j_A Ubiquitin; protein comp 66.7 8.5 0.00029 24.2 4.2 38 29-67 11-48 (76)
13 3phx_B Ubiquitin-like protein 65.8 10 0.00035 24.5 4.6 39 28-67 14-52 (79)
14 3n3k_B Ubiquitin; hydrolase, p 65.6 8.8 0.0003 24.9 4.3 37 29-66 14-50 (85)
15 1ndd_A NEDD8, protein (ubiquit 64.7 10 0.00036 23.8 4.4 38 29-67 11-48 (76)
16 3k9o_B Ubiquitin, UBB+1; E2-25 64.4 9.3 0.00032 25.7 4.3 38 29-67 12-49 (96)
17 2hzc_A Splicing factor U2AF 65 63.2 21 0.00071 22.8 5.8 47 30-92 9-64 (87)
18 4eew_A Large proline-rich prot 62.7 11 0.00037 25.0 4.3 39 28-67 27-65 (88)
19 3mtn_B UBA80, ubcep1, ubiquiti 61.3 11 0.00037 24.4 4.1 38 29-67 14-51 (85)
20 2lxi_A RNA-binding protein 10; 60.4 10 0.00035 25.4 3.9 31 32-63 6-36 (91)
21 4fbj_B NEDD8; effector-HOST ta 58.8 10 0.00035 25.5 3.7 39 28-67 10-48 (88)
22 1x4g_A Nucleolysin TIAR; struc 58.4 32 0.0011 23.2 6.3 45 29-91 27-71 (109)
23 3q3f_A Ribonuclease/ubiquitin 58.3 20 0.00068 28.4 5.8 64 3-67 83-153 (189)
24 4dwf_A HLA-B-associated transc 58.0 14 0.00046 24.6 4.2 39 28-67 15-53 (90)
25 3dbh_I NEDD8; cell cycle, acti 57.9 11 0.00037 24.7 3.6 39 28-67 22-60 (88)
26 2bwf_A Ubiquitin-like protein 57.5 17 0.00057 23.1 4.4 38 29-67 14-51 (77)
27 1wh3_A 59 kDa 2'-5'-oligoadeny 57.3 12 0.00041 24.6 3.8 38 29-67 18-55 (87)
28 4hcn_B Polyubiquitin, ubiquiti 56.7 12 0.00039 25.8 3.7 38 29-67 33-70 (98)
29 3v6c_B Ubiquitin; structural g 55.9 15 0.0005 24.7 4.1 38 29-67 28-65 (91)
30 2kd0_A LRR repeats and ubiquit 55.7 13 0.00046 24.9 3.8 38 29-67 22-59 (85)
31 3vdz_A Ubiquitin-40S ribosomal 54.8 19 0.00064 25.5 4.7 38 29-67 46-83 (111)
32 2dzi_A Ubiquitin-like protein 54.2 14 0.00048 23.7 3.6 38 29-67 18-55 (81)
33 2dhg_A TRNA selenocysteine ass 52.5 48 0.0016 21.9 7.3 34 29-63 11-44 (104)
34 1sif_A Ubiquitin; hydrophobic 51.4 16 0.00053 24.6 3.6 38 29-67 20-57 (88)
35 2klc_A Ubiquilin-1; ubiquitin- 51.1 25 0.00086 24.3 4.8 38 29-67 35-72 (101)
36 1s79_A Lupus LA protein; RRM, 50.9 57 0.0019 22.3 6.6 34 28-63 12-45 (103)
37 2l7r_A Ubiquitin-like protein 50.7 16 0.00055 24.9 3.6 38 29-67 28-65 (93)
38 1v86_A DNA segment, CHR 7, way 50.7 12 0.00042 25.7 3.0 39 28-67 26-64 (95)
39 3m62_B UV excision repair prot 50.6 11 0.00039 26.4 2.9 40 28-68 11-50 (106)
40 2kk8_A Uncharacterized protein 50.4 24 0.00082 23.7 4.4 39 28-67 20-58 (84)
41 2ytc_A PRE-mRNA-splicing facto 50.2 46 0.0016 21.0 6.4 45 29-91 14-58 (85)
42 1yx5_B Ubiquitin; proteasome, 50.0 21 0.00072 24.2 4.2 38 29-67 11-48 (98)
43 3r27_A HnRNP L, heterogeneous 50.0 47 0.0016 23.4 6.1 33 28-62 20-54 (100)
44 2cph_A RNA binding motif prote 49.6 47 0.0016 22.0 5.9 34 29-64 17-50 (107)
45 2dh8_A DAZ-associated protein 47.8 38 0.0013 22.5 5.2 49 31-93 20-70 (105)
46 2hj8_A Interferon-induced 17 k 47.6 20 0.0007 23.9 3.7 38 29-67 15-52 (88)
47 3q2s_C Cleavage and polyadenyl 47.6 33 0.0011 27.1 5.5 34 30-64 71-105 (229)
48 2dgs_A DAZ-associated protein 47.4 37 0.0013 22.3 5.0 32 30-63 13-44 (99)
49 1wy8_A NP95-like ring finger p 46.5 26 0.00091 23.0 4.1 38 29-67 19-57 (89)
50 2uyz_B Small ubiquitin-related 46.1 26 0.0009 22.5 4.0 39 28-67 13-51 (79)
51 2kj6_A Tubulin folding cofacto 46.1 33 0.0011 24.1 4.7 46 17-62 15-60 (97)
52 1wx8_A Riken cDNA 4931431F19; 45.8 16 0.00056 24.6 3.0 39 28-67 26-64 (96)
53 1j8c_A Ubiquitin-like protein 45.1 34 0.0012 24.8 4.9 38 29-67 42-79 (125)
54 2e44_A Insulin-like growth fac 45.0 61 0.0021 21.0 7.6 31 28-60 16-46 (96)
55 2kjr_A CG11242; UBL, ubiquitin 44.9 28 0.00095 24.2 4.2 53 12-64 11-63 (95)
56 2xzm_P RPS24E; ribosome, trans 44.8 11 0.00036 29.5 2.1 34 29-62 19-56 (149)
57 3rt3_B Ubiquitin-like protein 44.6 43 0.0015 24.4 5.4 39 28-67 91-129 (159)
58 2g4b_A Splicing factor U2AF 65 44.4 53 0.0018 23.2 5.8 35 30-64 7-50 (172)
59 2dgv_A HnRNP M, heterogeneous 44.3 52 0.0018 21.1 5.3 46 31-90 12-57 (92)
60 2nlw_A Eukaryotic translation 43.9 53 0.0018 22.1 5.5 50 30-93 18-73 (105)
61 1wx7_A Ubiquilin 3; ubiquitin- 43.4 30 0.001 23.9 4.2 37 30-67 28-64 (106)
62 2cqc_A Arginine/serine-rich sp 43.1 64 0.0022 20.7 6.1 33 29-63 17-49 (95)
63 1wex_A Hypothetical protein (r 42.5 37 0.0013 23.5 4.5 30 31-62 19-48 (104)
64 3rt3_B Ubiquitin-like protein 42.3 41 0.0014 24.5 5.0 40 28-67 12-52 (159)
65 1sjq_A Polypyrimidine tract-bi 42.1 54 0.0018 23.2 5.4 33 29-63 18-50 (105)
66 2kdi_A Ubiquitin, vacuolar pro 42.0 33 0.0011 24.3 4.3 39 28-67 19-57 (114)
67 2faz_A Ubiquitin-like containi 41.9 37 0.0013 21.6 4.2 36 31-67 16-52 (78)
68 2yh0_A Splicing factor U2AF 65 41.9 48 0.0016 24.0 5.3 33 30-62 7-48 (198)
69 1why_A Hypothetical protein ri 41.8 56 0.0019 21.4 5.2 32 29-62 19-50 (97)
70 4f25_A Polyadenylate-binding p 41.7 53 0.0018 22.5 5.3 50 29-92 7-56 (115)
71 2ojr_A Ubiquitin; lanthide-bin 41.6 36 0.0012 23.8 4.4 38 29-67 46-83 (111)
72 1yqb_A Ubiquilin 3; structural 41.4 33 0.0011 23.7 4.1 37 30-67 33-69 (100)
73 2dng_A Eukaryotic translation 41.4 31 0.0011 22.9 3.9 31 31-64 19-49 (103)
74 2cpj_A Non-POU domain-containi 41.2 39 0.0013 22.3 4.4 45 30-92 18-62 (99)
75 2kan_A Uncharacterized protein 40.2 33 0.0011 23.5 3.9 37 30-67 26-62 (94)
76 2daf_A FLJ35834 protein; hypot 40.0 31 0.0011 25.7 4.0 72 29-105 27-101 (118)
77 1x4c_A Splicing factor, argini 39.9 65 0.0022 21.7 5.4 32 29-62 17-48 (108)
78 1v5o_A 1700011N24RIK protein; 39.7 29 0.00098 24.0 3.6 37 29-66 22-58 (102)
79 1x5u_A Splicing factor 3B subu 39.6 79 0.0027 20.8 5.9 33 29-63 17-49 (105)
80 1whx_A Hypothetical protein ri 39.0 46 0.0016 22.8 4.6 30 31-62 14-43 (111)
81 3mdf_A Peptidyl-prolyl CIS-tra 38.8 71 0.0024 20.0 5.4 32 30-63 10-41 (85)
82 2cq3_A RNA-binding protein 9; 38.1 79 0.0027 20.8 5.6 49 29-91 17-65 (103)
83 2ywk_A Putative RNA-binding pr 38.1 71 0.0024 20.5 5.2 50 29-92 18-68 (95)
84 1x4a_A Splicing factor, argini 38.1 68 0.0023 21.4 5.3 31 29-61 24-54 (109)
85 2hvz_A Splicing factor, argini 38.0 81 0.0028 20.6 5.6 44 31-91 4-47 (101)
86 1wju_A NEDD8 ultimate buster-1 37.7 46 0.0016 23.7 4.5 39 28-67 29-67 (100)
87 2dis_A Unnamed protein product 37.6 86 0.0029 20.7 5.7 32 30-62 11-42 (109)
88 1we7_A SF3A1 protein; structur 36.8 37 0.0013 23.9 3.8 38 29-67 46-83 (115)
89 1owx_A Lupus LA protein, SS-B, 36.7 52 0.0018 24.2 4.7 48 26-91 15-65 (121)
90 2dgw_A Probable RNA-binding pr 36.5 83 0.0028 20.1 5.4 47 29-90 12-59 (91)
91 2ad9_A Polypyrimidine tract-bi 36.1 66 0.0023 23.2 5.2 32 30-63 34-65 (119)
92 3beg_B Splicing factor, argini 36.1 57 0.0019 22.4 4.7 33 28-62 17-49 (115)
93 2cq4_A RNA binding motif prote 35.6 44 0.0015 22.6 4.0 33 29-63 27-59 (114)
94 1v5t_A 8430435I17RIK protein; 35.3 22 0.00075 24.0 2.3 39 29-67 17-58 (90)
95 2rs2_A Musashi-1, RNA-binding 35.1 70 0.0024 21.7 5.0 33 29-63 27-59 (109)
96 4a8x_A RNA-binding protein wit 35.1 70 0.0024 20.1 4.7 33 31-65 8-40 (88)
97 1whw_A Hypothetical protein ri 34.9 80 0.0027 20.5 5.1 32 30-63 11-42 (99)
98 1we6_A Splicing factor, putati 34.5 32 0.0011 24.1 3.1 37 29-66 41-78 (111)
99 2lkz_A RNA-binding protein 5; 34.0 33 0.0011 23.4 3.1 37 27-63 8-45 (95)
100 1wgg_A Ubiquitin carboxyl-term 33.9 25 0.00087 24.2 2.5 38 29-67 17-55 (96)
101 3ex7_B RNA-binding protein 8A; 33.7 63 0.0022 22.1 4.6 32 30-63 25-56 (126)
102 1wi8_A EIF-4B, eukaryotic tran 33.6 41 0.0014 22.4 3.5 31 31-64 19-49 (104)
103 3b08_A Polyubiquitin-C, ubiqui 33.6 52 0.0018 23.3 4.3 38 29-67 11-48 (152)
104 1wyw_B Ubiquitin-like protein 33.5 50 0.0017 22.5 4.0 38 29-67 32-69 (97)
105 1x4h_A RNA-binding protein 28; 33.5 1E+02 0.0035 20.3 6.5 33 29-63 17-49 (111)
106 4fxv_A ELAV-like protein 1; RN 33.5 87 0.003 21.0 5.2 33 29-63 21-53 (99)
107 1wxv_A BAG-family molecular ch 33.3 47 0.0016 22.1 3.7 38 29-67 17-59 (92)
108 2jvr_A Nucleolar protein 3; RN 33.3 74 0.0025 22.3 5.0 33 29-62 30-62 (111)
109 2do4_A Squamous cell carcinoma 32.0 1.1E+02 0.0036 20.0 6.2 48 29-90 19-67 (100)
110 1x5p_A Negative elongation fac 31.7 1.1E+02 0.0037 20.0 6.3 31 29-61 15-45 (97)
111 3b1l_X E3 ubiquitin-protein li 37.8 9.9 0.00034 24.3 0.0 37 29-66 11-47 (76)
112 3b08_A Polyubiquitin-C, ubiqui 31.3 68 0.0023 22.7 4.5 38 29-67 87-124 (152)
113 2cq2_A Hypothetical protein LO 31.2 1.1E+02 0.0036 22.0 5.6 26 35-62 35-60 (114)
114 2dnq_A RNA-binding protein 4B; 31.1 1E+02 0.0036 19.7 5.2 30 31-62 12-41 (90)
115 2v94_A RPS24, 30S ribosomal pr 30.0 39 0.0013 24.7 3.0 34 29-62 25-62 (107)
116 1ywx_A 30S ribosomal protein S 30.0 31 0.0011 25.0 2.5 33 29-61 17-52 (102)
117 2wyq_A HHR23A, UV excision rep 30.0 80 0.0027 20.2 4.4 38 29-67 16-56 (85)
118 1fxl_A Paraneoplastic encephal 29.2 93 0.0032 21.5 4.9 32 31-64 6-37 (167)
119 2cqb_A Peptidyl-prolyl CIS-tra 28.9 60 0.0021 21.3 3.7 32 29-62 14-45 (102)
120 3md1_A Nuclear and cytoplasmic 28.8 1.1E+02 0.0037 19.0 4.9 31 31-63 5-35 (83)
121 1xn9_A 30S ribosomal protein S 28.8 31 0.0011 24.9 2.3 33 29-61 17-52 (101)
122 2d9p_A Polyadenylate-binding p 28.5 1.1E+02 0.0039 19.9 5.1 48 29-90 17-64 (103)
123 3u30_A Ubiquitin, linear DI-ub 28.4 72 0.0025 23.6 4.4 38 29-67 31-68 (172)
124 2g1d_A 30S ribosomal protein S 28.0 37 0.0013 24.4 2.6 33 29-61 17-53 (98)
125 2cq1_A PTB-like protein L; RRM 28.0 79 0.0027 21.7 4.3 42 31-90 19-60 (101)
126 1fje_B Nucleolin RBD12, protei 27.8 1.6E+02 0.0055 20.7 6.1 33 29-61 15-50 (175)
127 1wf1_A RNA-binding protein RAL 27.7 1E+02 0.0035 20.5 4.8 29 31-61 31-60 (110)
128 3md3_A Nuclear and cytoplasmic 27.3 1.5E+02 0.0052 20.3 6.1 32 31-64 4-35 (166)
129 2dzm_A FAS-associated factor 1 27.1 53 0.0018 23.2 3.2 38 29-66 19-56 (100)
130 4b6w_A Tubulin-specific chaper 27.1 61 0.0021 22.0 3.5 44 21-64 7-50 (86)
131 2lea_A Serine/arginine-rich sp 26.3 90 0.0031 22.2 4.5 32 29-62 49-80 (135)
132 3u5c_Y RP50, 40S ribosomal pro 26.1 41 0.0014 25.7 2.6 33 29-61 21-57 (135)
133 1b7f_A Protein (SXL-lethal pro 26.1 1.5E+02 0.0051 20.5 5.6 32 30-63 6-37 (168)
134 3plu_A Ubiquitin-like modifier 25.7 85 0.0029 22.2 4.1 39 28-67 31-69 (93)
135 2mss_A Protein (musashi1); RNA 25.7 1.2E+02 0.0041 18.5 5.3 31 31-63 3-33 (75)
136 3d2w_A TAR DNA-binding protein 25.4 1.1E+02 0.0038 20.0 4.5 33 29-63 13-45 (89)
137 2j8a_A Histone-lysine N-methyl 25.3 90 0.0031 23.8 4.4 36 28-65 3-42 (136)
138 2ku7_A MLL1 PHD3-CYP33 RRM chi 25.3 1.7E+02 0.0057 20.0 6.1 31 30-62 66-96 (140)
139 1iqt_A AUF1, heterogeneous nuc 25.2 91 0.0031 19.0 3.9 27 34-62 6-32 (75)
140 2jvo_A Nucleolar protein 3; nu 25.1 80 0.0027 21.5 3.9 30 31-62 35-64 (108)
141 3m63_B Ubiquitin domain-contai 24.9 19 0.00066 25.1 0.5 39 28-67 37-75 (101)
142 1ttn_A DC-UBP, dendritic cell- 24.6 47 0.0016 23.0 2.5 38 29-67 34-71 (106)
143 2hgm_A HNRPF protein, heteroge 24.4 98 0.0034 22.3 4.4 50 31-93 46-96 (126)
144 2lxa_A Ubiquitin-like protein 24.2 39 0.0013 23.1 2.0 39 28-67 11-52 (87)
145 1uh6_A Ubiquitin-like 5; beta- 24.2 66 0.0023 22.9 3.3 38 29-67 39-76 (100)
146 3l0w_B Monoubiquitinated proli 24.1 80 0.0027 23.9 4.0 38 29-67 11-48 (169)
147 3s8s_A Histone-lysine N-methyl 24.1 1.2E+02 0.0042 20.8 4.7 33 29-63 8-40 (110)
148 1wjn_A Tubulin-folding protein 24.1 44 0.0015 22.7 2.3 36 29-64 23-58 (97)
149 1wg1_A KIAA1579 protein, homol 24.1 51 0.0017 21.3 2.5 29 30-61 8-36 (88)
150 2cjk_A Nuclear polyadenylated 24.0 1.8E+02 0.0061 20.2 5.7 33 29-63 89-121 (167)
151 2x1f_A MRNA 3'-END-processing 23.8 1.5E+02 0.0052 19.1 5.4 30 32-63 7-36 (96)
152 2bz2_A Negative elongation fac 23.6 1.6E+02 0.0054 20.5 5.3 32 29-62 39-70 (121)
153 2dgt_A RNA-binding protein 30; 23.4 75 0.0026 20.5 3.3 30 31-62 14-43 (92)
154 2dnn_A RNA-binding protein 12; 23.2 94 0.0032 21.6 4.0 31 30-63 19-49 (109)
155 1uel_A HHR23B, UV excision rep 23.2 96 0.0033 20.8 3.9 38 29-67 11-51 (95)
156 3s7r_A Heterogeneous nuclear r 23.1 1.5E+02 0.005 18.7 5.1 33 29-63 13-45 (87)
157 3nmr_A Cugbp ELAV-like family 22.9 1.3E+02 0.0043 21.0 4.7 32 31-64 7-38 (175)
158 2d9o_A DNAJ (HSP40) homolog, s 22.7 1.6E+02 0.0056 20.2 5.1 24 37-62 27-50 (100)
159 4a20_A Ubiquitin-like protein 22.3 90 0.0031 21.8 3.7 36 31-67 34-70 (98)
160 1x1m_A Ubiquitin-like protein 22.3 87 0.003 21.6 3.6 38 29-67 26-75 (107)
161 1wgd_A Homocysteine-responsive 22.2 77 0.0026 21.1 3.2 37 30-67 21-59 (93)
162 2i2y_A Fusion protein consists 22.0 1.3E+02 0.0043 21.3 4.6 32 30-63 76-107 (150)
163 2khc_A Testis-specific RNP-typ 22.0 80 0.0027 21.3 3.3 30 31-62 44-73 (118)
164 2fki_A Protein YJBR; NESG, GFT 20.7 1.1E+02 0.0036 22.1 3.9 74 39-129 1-80 (126)
165 1v6e_A Cytoskeleton-associated 20.3 1E+02 0.0036 20.7 3.6 34 30-63 20-53 (95)
166 2hgl_A HNRPF protein, heteroge 20.3 1.1E+02 0.0036 22.3 3.9 33 30-63 47-81 (136)
167 2do0_A HnRNP M, heterogeneous 20.3 2E+02 0.0067 19.0 6.1 48 29-90 17-65 (114)
168 4f02_A Polyadenylate-binding p 20.1 1.7E+02 0.0058 21.9 5.1 32 30-63 18-49 (213)
No 1
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=99.96 E-value=4.4e-29 Score=183.75 Aligned_cols=86 Identities=28% Similarity=0.363 Sum_probs=81.7
Q ss_pred CCcceeecCCCCcccC---CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCcccccCCcccCCCCceEEEEEcC
Q 030915 13 TNLPIKLLMPNTFQNI---TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLK 89 (169)
Q Consensus 13 pni~ikpv~tEK~~~~---n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK~kR~~~~~gk~~~~KKAyVtL~ 89 (169)
.++++.|++||+++.+ |+|+|.|+++|||+|||+|||++|||+|.+|||+|++||.+|.|...|++++||||||+|+
T Consensus 3 ~~iI~~P~iTEKa~~~~e~n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~VnT~~~~gK~kR~g~~~G~~~~~KKA~VtL~ 82 (92)
T 3tve_T 3 YDVILAPVLSEKAYAGFAEGKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGKKKRLGRYLGKRPDRKKAIVQVA 82 (92)
T ss_dssp HHHEEEECCSHHHHTTTTTTEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEECCCEEESSSCEEECCCEEEEEEEEC
T ss_pred hheecccccCHHHHHHhhCCEEEEEECCCCCHHHHHHHHHHHhCCceeeeeeeeeCCceeeeccccccCCCceEEEEEcC
Confidence 4679999999999753 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCCCCCc
Q 030915 90 NPLSLSEDLFP 100 (169)
Q Consensus 90 ~g~~i~PdlF~ 100 (169)
+|++|+ +|+
T Consensus 83 ~g~~Id--~f~ 91 (92)
T 3tve_T 83 PGQKIE--ALE 91 (92)
T ss_dssp TTCCCT--TTC
T ss_pred CCCccc--CCC
Confidence 999998 886
No 2
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=99.95 E-value=6.3e-29 Score=183.85 Aligned_cols=88 Identities=24% Similarity=0.318 Sum_probs=82.7
Q ss_pred cCCcceeecCCCCccc---CCeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCcccccCCcccCCCCceEEEEEc
Q 030915 12 FTNLPIKLLMPNTFQN---ITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTL 88 (169)
Q Consensus 12 lpni~ikpv~tEK~~~---~n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK~kR~~~~~gk~~~~KKAyVtL 88 (169)
+.+++++|++|||++. .|+|+|.|+++|||+|||+|||++|||+|.+|||+|++||.||.|+..|++++||||||+|
T Consensus 3 ~~~iI~~PviTEKs~~~~e~n~y~F~V~~~anK~eIK~aVE~lf~VkV~~VNT~~~~gK~kR~g~~~G~~~~~KKAiVtL 82 (95)
T 2zjr_Q 3 HYDILQAPVISEKAYSAMERGVYSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGKRKRVGRFIGQRNDRKKAIVRL 82 (95)
T ss_dssp CSSSCCEECCTHHHHHHHTTTCCEEEECSSCTHHHHHHHHHHHHCCCCSEEEECCBCCCCCSSSSCCCCCCCBEEEEEEC
T ss_pred hHhceeccccCHHHHHHHHCCEEEEEEcCCCCHHHHHHHHHHHhCCCceEEEeEEeCCccceeccccccCCCcEEEEEEe
Confidence 4589999999999985 4779999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccCCCCCcc
Q 030915 89 KNPLSLSEDLFPI 101 (169)
Q Consensus 89 ~~g~~i~PdlF~~ 101 (169)
.+|++|+ +|..
T Consensus 83 ~~g~~id--~~~~ 93 (95)
T 2zjr_Q 83 AEGQSIE--ALAG 93 (95)
T ss_dssp CSSCCCS--STTT
T ss_pred CCCCeee--cccC
Confidence 9999988 8864
No 3
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=99.95 E-value=2e-28 Score=180.57 Aligned_cols=83 Identities=34% Similarity=0.450 Sum_probs=79.1
Q ss_pred cCCcceeecCCCCccc----CCeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCcccccCCcccCCCCceEEEEE
Q 030915 12 FTNLPIKLLMPNTFQN----ITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVT 87 (169)
Q Consensus 12 lpni~ikpv~tEK~~~----~n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK~kR~~~~~gk~~~~KKAyVt 87 (169)
+.++++.|++||+++. .|+|+|.|+++|||+|||+|||++|||+|.+|||++++||.+|.|...|++++||||||+
T Consensus 7 ~~~iIk~P~iTEKa~~~~e~~n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK~kR~g~~~G~~~~~KKAiVt 86 (93)
T 3r8s_T 7 LLKVLRAPHVSEKASTAMEKSNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVT 86 (93)
T ss_dssp HHHHEEEECCSHHHHHHHHTTSEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCCBCCSSSSCCBCCCEEEEEEE
T ss_pred HHhhhhccccCHHHHHHHHhCCEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCceeeeCCccccCCCcEEEEEE
Confidence 5678999999999975 499999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcc
Q 030915 88 LKNPLSL 94 (169)
Q Consensus 88 L~~g~~i 94 (169)
|++|++|
T Consensus 87 L~~g~~I 93 (93)
T 3r8s_T 87 LKEGQNL 93 (93)
T ss_dssp CCSCCCC
T ss_pred cCCcCCC
Confidence 9999986
No 4
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=99.87 E-value=6.4e-23 Score=148.97 Aligned_cols=73 Identities=22% Similarity=0.171 Sum_probs=66.6
Q ss_pred CCcceeecCCCCccc----CCeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCcccccCCcccCCCCceEEEEEc
Q 030915 13 TNLPIKLLMPNTFQN----ITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTL 88 (169)
Q Consensus 13 pni~ikpv~tEK~~~----~n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK~kR~~~~~gk~~~~KKAyVtL 88 (169)
.+++++|++|||++. .|+|+|.|+++|||+|||+|||++|||+|.+|||++.+. +||||||+|
T Consensus 3 ~~iIk~P~iTEKa~~~~e~~n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~-------------~~KKA~VtL 69 (85)
T 1vq8_S 3 WDVIKHPHVTEKAMNDMDFQNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMD-------------GEKKAVVRL 69 (85)
T ss_dssp CCSEEEECCSHHHHHHHHHSCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTT-------------SSEEEEEEE
T ss_pred cceeeccccCHHHHHHHHhCCEEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCC-------------CceEEEEEE
Confidence 478999999999985 599999999999999999999999999999999999873 599999999
Q ss_pred CCCCc-cCCCCCc
Q 030915 89 KNPLS-LSEDLFP 100 (169)
Q Consensus 89 ~~g~~-i~PdlF~ 100 (169)
.+|++ |+ +|.
T Consensus 70 ~~g~~aid--~~~ 80 (85)
T 1vq8_S 70 SEDDDAQE--VAS 80 (85)
T ss_dssp CTTSCHHH--HHT
T ss_pred CCCCcHHH--HHH
Confidence 99998 77 553
No 5
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.85 E-value=9.7e-22 Score=143.08 Aligned_cols=70 Identities=29% Similarity=0.341 Sum_probs=64.6
Q ss_pred cCCcceeecCCCCccc----CCeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCcccccCCcccCCCCceEEEEE
Q 030915 12 FTNLPIKLLMPNTFQN----ITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVT 87 (169)
Q Consensus 12 lpni~ikpv~tEK~~~----~n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK~kR~~~~~gk~~~~KKAyVt 87 (169)
..++++.|++||+++. .|+|+|.|+++|||+|||+|||++|||+|.+|||++.+. +||||||+
T Consensus 3 ~~~iIk~P~iTEKa~~~~e~~n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~-------------~~KKA~V~ 69 (86)
T 3j21_T 3 PYKVIIRPVVTEKAISLIEKENKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPR-------------GEKKAYVK 69 (86)
T ss_dssp CCCCEEECCCSHHHHHHHHTSCEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTT-------------SCEEEEEE
T ss_pred hHHhhhccccCHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCC-------------CceEEEEE
Confidence 4688999999999975 499999999999999999999999999999999999874 58999999
Q ss_pred cCCCCcc
Q 030915 88 LKNPLSL 94 (169)
Q Consensus 88 L~~g~~i 94 (169)
|.+|++.
T Consensus 70 L~~~~~a 76 (86)
T 3j21_T 70 LKPEYSA 76 (86)
T ss_dssp ECTTSCH
T ss_pred cCCCCcH
Confidence 9999974
No 6
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.84 E-value=1.8e-21 Score=155.06 Aligned_cols=76 Identities=25% Similarity=0.255 Sum_probs=65.6
Q ss_pred eeecCCcceeecCCCCccc----CCeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCcccccCCcccCCCCceEE
Q 030915 9 VVHFTNLPIKLLMPNTFQN----ITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKA 84 (169)
Q Consensus 9 ~Iflpni~ikpv~tEK~~~----~n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK~kR~~~~~gk~~~~KKA 84 (169)
.....++|+.|++||+++. .|+|+|.|+++|||+|||+|||+||||+|.+|||+|++| +||||
T Consensus 70 kmd~~~iIk~PliTEKa~~~~E~~n~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~-------------~~KKA 136 (156)
T 2zkr_s 70 KLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPD-------------GEKKA 136 (156)
T ss_dssp ------CEEEECCSHHHHHHHHHHCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSS-------------SCEEE
T ss_pred cCCHHHhHhcccccHHHHHHHHhCCcEEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCC-------------CceEE
Confidence 3456789999999999986 389999999999999999999999999999999999998 49999
Q ss_pred EEEcCCCCc-cCCCCC
Q 030915 85 YVTLKNPLS-LSEDLF 99 (169)
Q Consensus 85 yVtL~~g~~-i~PdlF 99 (169)
||+|.+|++ |+ +|
T Consensus 137 iVtL~~g~~aid--~~ 150 (156)
T 2zkr_s 137 YVRLAPDYDALD--VA 150 (156)
T ss_dssp EEEECTTSCHHH--HH
T ss_pred EEEECCCCcHHH--HH
Confidence 999999987 76 55
No 7
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=99.80 E-value=2.5e-20 Score=146.55 Aligned_cols=72 Identities=25% Similarity=0.261 Sum_probs=65.9
Q ss_pred eeecCCcceeecCCCCccc----CCeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCcccccCCcccCCCCceEE
Q 030915 9 VVHFTNLPIKLLMPNTFQN----ITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKA 84 (169)
Q Consensus 9 ~Iflpni~ikpv~tEK~~~----~n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK~kR~~~~~gk~~~~KKA 84 (169)
.....++|+.|++||+++. .|+|+|.|+++|||+|||+|||++|||+|.+|||+|+++ +||||
T Consensus 56 kld~~~IIk~PliTEKa~~~~E~~N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~-------------g~KKA 122 (142)
T 3u5e_X 56 RLDSYKVIEQPITSETAMKKVEDGNILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPN-------------GTKKA 122 (142)
T ss_dssp TTCHHHHEEEECCCHHHHHHHHHHCEEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTT-------------SCEEE
T ss_pred CCCHHHhhhcCCcCHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCC-------------CceEE
Confidence 3456678999999999975 399999999999999999999999999999999999986 59999
Q ss_pred EEEcCCCCc
Q 030915 85 YVTLKNPLS 93 (169)
Q Consensus 85 yVtL~~g~~ 93 (169)
||+|.+|++
T Consensus 123 yV~L~~~~d 131 (142)
T 3u5e_X 123 YVRLTADYD 131 (142)
T ss_dssp EEEECTTCC
T ss_pred EEEeCCCCc
Confidence 999999986
No 8
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=99.80 E-value=6.5e-20 Score=145.55 Aligned_cols=72 Identities=22% Similarity=0.220 Sum_probs=66.3
Q ss_pred eeecCCcceeecCCCCccc----CCeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCcccccCCcccCCCCceEE
Q 030915 9 VVHFTNLPIKLLMPNTFQN----ITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKA 84 (169)
Q Consensus 9 ~Iflpni~ikpv~tEK~~~----~n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK~kR~~~~~gk~~~~KKA 84 (169)
.....++|+.|++||+++. .|+|+|.|+++|||+|||+|||++|||+|.+|||+|.++ +||||
T Consensus 66 kmd~~~IIk~PliTEKa~~~~E~~N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~-------------g~KKA 132 (152)
T 3iz5_X 66 KLDQYQILKYPLTTESAMKKIEDNNTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPD-------------GKKKA 132 (152)
T ss_dssp CCCCCCSEEEECCSHHHHHHHHHHSEEEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECTT-------------SSEEE
T ss_pred cCcHHHHHhhCCcCHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcCC-------------CceEE
Confidence 4567899999999999985 399999999999999999999999999999999999864 68999
Q ss_pred EEEcCCCCc
Q 030915 85 YVTLKNPLS 93 (169)
Q Consensus 85 yVtL~~g~~ 93 (169)
||+|.+|++
T Consensus 133 yV~L~~~~d 141 (152)
T 3iz5_X 133 YVKLTPDYD 141 (152)
T ss_dssp EEEECTTSC
T ss_pred EEEcCCCCc
Confidence 999999986
No 9
>3bbo_V Ribosomal protein L23; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=99.79 E-value=5e-21 Score=156.55 Aligned_cols=77 Identities=19% Similarity=0.271 Sum_probs=68.9
Q ss_pred eeecCCcceeecCCCCccc----CCeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCcccccCCcccCCCCceEE
Q 030915 9 VVHFTNLPIKLLMPNTFQN----ITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKA 84 (169)
Q Consensus 9 ~Iflpni~ikpv~tEK~~~----~n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK~kR~~~~~gk~~~~KKA 84 (169)
...+.++|++|++|||++. .|+|+|.|+++|||+|||+|||++|||+|.+|||+|++| +||||
T Consensus 108 kMd~ydIIk~PvITEKAmkliE~nNkyvF~Vd~kANK~QIKqAVEkLFdVKV~kVNTln~~g-------------g~KKA 174 (198)
T 3bbo_V 108 ILDVYQILQSPIITEAAIKNIADENSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPD-------------GTKKA 174 (198)
T ss_dssp --CCCCCBCCCCCCHHHHHHHHTSCEECCEECTTCCHHHHHHTTTTTSCCCEEECCCEEETT-------------TEEEC
T ss_pred cCCHhheeeccccCHHHHHHHHhCCEEEEEECCCCCHHHHHHHHHHHhCCceeEEEeeEcCC-------------CeEEE
Confidence 3556689999999999985 489999999999999999999999999999999999998 49999
Q ss_pred EEEcCCCCc-cCCCCCc
Q 030915 85 YVTLKNPLS-LSEDLFP 100 (169)
Q Consensus 85 yVtL~~g~~-i~PdlF~ 100 (169)
||+|.+|++ |+ +|.
T Consensus 175 yVtLaeG~~AID--~an 189 (198)
T 3bbo_V 175 YIMLNKEYNASE--LAK 189 (198)
T ss_dssp CEEECTTTCTTT--HHH
T ss_pred EEEeCCCCchHH--HHH
Confidence 999999997 77 553
No 10
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=99.79 E-value=4.9e-20 Score=145.95 Aligned_cols=71 Identities=24% Similarity=0.272 Sum_probs=65.4
Q ss_pred eecCCcceeecCCCCccc----CCeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCcccccCCcccCCCCceEEE
Q 030915 10 VHFTNLPIKLLMPNTFQN----ITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAY 85 (169)
Q Consensus 10 Iflpni~ikpv~tEK~~~----~n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK~kR~~~~~gk~~~~KKAy 85 (169)
....++|+.|++||+++. .|+|+|.|+++|||+|||+|||++|||+|.+|||+|+++ +|||||
T Consensus 65 ld~y~IIk~PliTEKa~~~~E~~N~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~-------------g~KKAy 131 (150)
T 4a17_R 65 LDNHSVVKTPLTTEKAMKKMEDENTMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTIT-------------GNKKAY 131 (150)
T ss_dssp CCHHHHEEEECCSHHHHHHHHHSSEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTT-------------SCEEEE
T ss_pred CCHHHhhhccccCHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCC-------------CcEEEE
Confidence 355678999999999974 599999999999999999999999999999999999986 589999
Q ss_pred EEcCCCCc
Q 030915 86 VTLKNPLS 93 (169)
Q Consensus 86 VtL~~g~~ 93 (169)
|+|.+|++
T Consensus 132 V~La~~~d 139 (150)
T 4a17_R 132 IRLAADSD 139 (150)
T ss_dssp EEECSSSC
T ss_pred EEcCCCCc
Confidence 99999986
No 11
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=74.74 E-value=4.4 Score=29.57 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=34.6
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCc
Q 030915 28 ITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGK 67 (169)
Q Consensus 28 ~n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK 67 (169)
...+++.|++.+|=.+||+.|+.-||+++..-+ ++..|+
T Consensus 36 ~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QR-li~ggk 74 (105)
T 4dbg_A 36 TVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQ-WVIGQR 74 (105)
T ss_dssp CEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEE-EEETTE
T ss_pred CceEEEEECCcChHHHHHHHHHHHhCCCHHHEE-EeccCe
Confidence 478999999999999999999999999998888 666554
No 12
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=66.69 E-value=8.5 Score=24.25 Aligned_cols=38 Identities=26% Similarity=0.405 Sum_probs=32.3
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCc
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGK 67 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK 67 (169)
..+.+.|++.+|=.++|+.|+..+++++...+.. +.|+
T Consensus 11 ~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~-~~g~ 48 (76)
T 3a9j_A 11 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAGK 48 (76)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE-ETTE
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEE-ECCe
Confidence 4678999999999999999999999999877764 4453
No 13
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=65.84 E-value=10 Score=24.55 Aligned_cols=39 Identities=18% Similarity=0.190 Sum_probs=33.1
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCc
Q 030915 28 ITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGK 67 (169)
Q Consensus 28 ~n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK 67 (169)
-.++.+.|++..|=.++|+.|+...|+++...+. ++.|+
T Consensus 14 g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL-~~~G~ 52 (79)
T 3phx_B 14 GRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWL-TFEGK 52 (79)
T ss_dssp SCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEE-EETTE
T ss_pred CCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEE-EECCE
Confidence 3678899999999999999999999999988754 45664
No 14
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=65.61 E-value=8.8 Score=24.93 Aligned_cols=37 Identities=24% Similarity=0.372 Sum_probs=32.0
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCC
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEG 66 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~G 66 (169)
..+.+.|++..|=.++|+.|+..+++++...+.+ +.|
T Consensus 14 ~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~-~~g 50 (85)
T 3n3k_B 14 RTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAG 50 (85)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE-ETB
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEE-ECC
Confidence 5688999999999999999999999999887654 445
No 15
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=64.69 E-value=10 Score=23.81 Aligned_cols=38 Identities=26% Similarity=0.363 Sum_probs=32.5
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCc
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGK 67 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK 67 (169)
..+.+.|+++.|=.++|+.|+...|+++...+.. +.|+
T Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~-~~g~ 48 (76)
T 1ndd_A 11 KEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLI-YSGK 48 (76)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE-ETTE
T ss_pred CEEEEEECCCChHHHHHHHHHHHHCcChHHEEEE-ECCE
Confidence 4678999999999999999999999999887764 4553
No 16
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=64.36 E-value=9.3 Score=25.70 Aligned_cols=38 Identities=26% Similarity=0.405 Sum_probs=33.2
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCc
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGK 67 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK 67 (169)
..+.+.|++..|=.++|+.|+..+++++...+.+ +.|+
T Consensus 12 ~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~-~~G~ 49 (96)
T 3k9o_B 12 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAGK 49 (96)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE-ETTE
T ss_pred CEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEE-ECCE
Confidence 5688999999999999999999999999988665 5664
No 17
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=63.20 E-value=21 Score=22.79 Aligned_cols=47 Identities=9% Similarity=0.020 Sum_probs=33.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHh---CC------ceeEEEeeecCCcccccCCcccCCCCceEEEEEcCCCC
Q 030915 30 EIALKTIPSASKIEIKRVLESLY---GF------EVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLKNPL 92 (169)
Q Consensus 30 ~~~F~V~~~atK~eIK~alekiY---~V------kV~kVnT~~~~GK~kR~~~~~gk~~~~KKAyVtL~~g~ 92 (169)
.++-.++..+|..||+++++... |+ +|.+|.+.... --|||++...+
T Consensus 9 l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~k----------------g~afV~f~~~~ 64 (87)
T 2hzc_A 9 LYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDK----------------NFAFLEFRSVD 64 (87)
T ss_dssp EEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSS----------------SEEEEEESSHH
T ss_pred EEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCC----------------cEEEEEcCCHH
Confidence 34556788999999999999864 76 77777765322 26888877433
No 18
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=62.73 E-value=11 Score=25.03 Aligned_cols=39 Identities=13% Similarity=0.098 Sum_probs=33.2
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCc
Q 030915 28 ITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGK 67 (169)
Q Consensus 28 ~n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK 67 (169)
...+.+.|++..|=.++|+.|+..+|+++...+. ++.|+
T Consensus 27 g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL-i~~Gk 65 (88)
T 4eew_A 27 SQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRL-IYQGR 65 (88)
T ss_dssp SCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEE-EETTE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEE-EECCE
Confidence 3668899999999999999999999999988754 45664
No 19
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=61.26 E-value=11 Score=24.39 Aligned_cols=38 Identities=26% Similarity=0.405 Sum_probs=32.5
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCc
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGK 67 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK 67 (169)
..+.+.|++..|=.++|+.|+...++++...+.+ +.|+
T Consensus 14 ~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~-~~g~ 51 (85)
T 3mtn_B 14 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAGK 51 (85)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEE-ETTE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEE-ECCE
Confidence 5688999999999999999999999999877654 5553
No 20
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=60.42 E-value=10 Score=25.38 Aligned_cols=31 Identities=23% Similarity=0.275 Sum_probs=25.3
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCceeEEEeee
Q 030915 32 ALKTIPSASKIEIKRVLESLYGFEVDKVRTLN 63 (169)
Q Consensus 32 ~F~V~~~atK~eIK~alekiY~VkV~kVnT~~ 63 (169)
+-..+..+|..||+++++. ||.+|.+|+.+.
T Consensus 6 v~nLp~~~te~~l~~~F~~-~G~~v~~v~i~~ 36 (91)
T 2lxi_A 6 LRMLPQAATEDDIRGQLQS-HGVQAREVRLMR 36 (91)
T ss_dssp EETCCSSCCHHHHHHHHHH-HTCCCSBCCSSS
T ss_pred EeCCCCCCCHHHHHHHHHH-hCCEeEEEEEEe
Confidence 3347889999999999987 788888887763
No 21
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=58.84 E-value=10 Score=25.48 Aligned_cols=39 Identities=26% Similarity=0.268 Sum_probs=33.0
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCc
Q 030915 28 ITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGK 67 (169)
Q Consensus 28 ~n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK 67 (169)
..++.+.|++..|=.++|+.|+..+|+++...+. ++.|+
T Consensus 10 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL-i~~Gk 48 (88)
T 4fbj_B 10 GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRL-IYSGK 48 (88)
T ss_dssp CCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEE-EETTE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEE-EECCe
Confidence 3668899999999999999999999999988754 45564
No 22
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=58.37 E-value=32 Score=23.18 Aligned_cols=45 Identities=9% Similarity=0.225 Sum_probs=33.2
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCcccccCCcccCCCCceEEEEEcCCC
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLKNP 91 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK~kR~~~~~gk~~~~KKAyVtL~~g 91 (169)
..|+-.++..+|..+|++.++. || +|..|...... --|||++...
T Consensus 27 ~l~V~nl~~~~t~~~l~~~F~~-~G-~i~~v~i~~~~----------------g~afV~f~~~ 71 (109)
T 1x4g_A 27 TVYCGGIASGLTDQLMRQTFSP-FG-QIMEIRVFPEK----------------GYSFVRFSTH 71 (109)
T ss_dssp EEEEECCSSCCCHHHHHHHHHH-HS-CEEEEEEETTT----------------TEEEEEESSH
T ss_pred EEEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEeCCC----------------CEEEEEECCH
Confidence 3456668889999999999987 77 67787766432 2688887743
No 23
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=58.29 E-value=20 Score=28.38 Aligned_cols=64 Identities=20% Similarity=0.194 Sum_probs=45.6
Q ss_pred ccCCcceeecCCcceeecCCCCcc-------cCCeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCc
Q 030915 3 SRLGTRVVHFTNLPIKLLMPNTFQ-------NITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGK 67 (169)
Q Consensus 3 ~r~g~r~Iflpni~ikpv~tEK~~-------~~n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK 67 (169)
.|-..|+|+--+..+..-..--.+ .-.++++.|++..|=.++|+.|+...++++...+.+ ..|+
T Consensus 83 ~r~~~r~~~s~dg~~y~T~d~~eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi-~~Gk 153 (189)
T 3q3f_A 83 FRNSDRILYSSDWLIYKTTDHYGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAGK 153 (189)
T ss_dssp SCCSCEEEEETTCCEEEESCCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEE-ETTE
T ss_pred CCCccceEecCCCcEEEcccccceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEE-ECCE
Confidence 466667777776555443322222 236789999999999999999999999999776554 5554
No 24
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=58.03 E-value=14 Score=24.60 Aligned_cols=39 Identities=13% Similarity=0.098 Sum_probs=33.6
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCc
Q 030915 28 ITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGK 67 (169)
Q Consensus 28 ~n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK 67 (169)
...+.+.|++..|=.++|+.|+..+++++...+. ++.|+
T Consensus 15 g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL-i~~Gk 53 (90)
T 4dwf_A 15 SQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRL-IYQGR 53 (90)
T ss_dssp CCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEE-EETTE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEE-EECCe
Confidence 4678899999999999999999999999988765 45664
No 25
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=57.93 E-value=11 Score=24.69 Aligned_cols=39 Identities=26% Similarity=0.268 Sum_probs=32.6
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCc
Q 030915 28 ITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGK 67 (169)
Q Consensus 28 ~n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK 67 (169)
...+.+.|++..|=.++|+.|+..+++++...+. ++.|+
T Consensus 22 g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL-~~~G~ 60 (88)
T 3dbh_I 22 GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRL-IYSGK 60 (88)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCE-EETTE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEE-EECCe
Confidence 3678999999999999999999999999877654 35554
No 26
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=57.54 E-value=17 Score=23.05 Aligned_cols=38 Identities=18% Similarity=0.403 Sum_probs=32.8
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCc
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGK 67 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK 67 (169)
..+.+.|++..|=.++|+.|+...|+++...+.. +.|+
T Consensus 14 ~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~-~~gk 51 (77)
T 2bwf_A 14 DKWEVNVAPESTVLQFKEAINKANGIPVANQRLI-YSGK 51 (77)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE-ETTE
T ss_pred EEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEE-ECCe
Confidence 4688999999999999999999999999888764 5563
No 27
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=57.34 E-value=12 Score=24.58 Aligned_cols=38 Identities=16% Similarity=0.256 Sum_probs=32.5
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCc
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGK 67 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK 67 (169)
..+.+.|++..|=.++|+.|+...++++...+.+ +.|+
T Consensus 18 ~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~-~~Gk 55 (87)
T 1wh3_A 18 GSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLE-FQGQ 55 (87)
T ss_dssp EEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEE-ETTE
T ss_pred CEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEE-ECCE
Confidence 4678999999999999999999999999887764 4553
No 28
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=56.66 E-value=12 Score=25.76 Aligned_cols=38 Identities=24% Similarity=0.336 Sum_probs=32.8
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCc
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGK 67 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK 67 (169)
..+.+.|++..|=.++|+.|+..+++++...+.+ +.|+
T Consensus 33 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~Gk 70 (98)
T 4hcn_B 33 KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI-FAGK 70 (98)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEE-ETTE
T ss_pred CEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEE-ECCE
Confidence 5689999999999999999999999999887554 5664
No 29
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=55.91 E-value=15 Score=24.68 Aligned_cols=38 Identities=29% Similarity=0.430 Sum_probs=32.6
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCc
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGK 67 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK 67 (169)
.++.+.|++..|=.++|+.|+...|+++...+.+ +.|+
T Consensus 28 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~-~~Gk 65 (91)
T 3v6c_B 28 THITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAGK 65 (91)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEE-ETTE
T ss_pred CEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEE-ECCe
Confidence 5788999999999999999999999999887554 5564
No 30
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=55.68 E-value=13 Score=24.93 Aligned_cols=38 Identities=18% Similarity=0.326 Sum_probs=32.5
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCc
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGK 67 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK 67 (169)
..+.+.|++.+|=.++|+.|+...|+++...+.+ +.|+
T Consensus 22 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~-~~Gk 59 (85)
T 2kd0_A 22 KSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLI-FKGK 59 (85)
T ss_dssp EEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEE-ETTE
T ss_pred EEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEE-ECCe
Confidence 5678899999999999999999999999877765 5554
No 31
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=54.79 E-value=19 Score=25.46 Aligned_cols=38 Identities=26% Similarity=0.405 Sum_probs=33.2
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCc
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGK 67 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK 67 (169)
..+.|.|++..|=.++|+.|+..+++++...+.+ +.|+
T Consensus 46 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~Gk 83 (111)
T 3vdz_A 46 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAGK 83 (111)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE-ETTE
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEE-ECCE
Confidence 6789999999999999999999999999887665 5664
No 32
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.17 E-value=14 Score=23.70 Aligned_cols=38 Identities=21% Similarity=0.292 Sum_probs=32.0
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCc
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGK 67 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK 67 (169)
..+.+.|++..|=.++|+.|+...|+++...+.. +.|+
T Consensus 18 ~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~-~~gk 55 (81)
T 2dzi_A 18 RECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLL-FKGK 55 (81)
T ss_dssp CEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEE-ETTE
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEE-ECCe
Confidence 5678999999999999999999999998777654 4553
No 33
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.45 E-value=48 Score=21.90 Aligned_cols=34 Identities=6% Similarity=0.033 Sum_probs=27.5
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeee
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLN 63 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~ 63 (169)
..++-.++..+|..+|+++++..|| +|..|....
T Consensus 11 ~l~V~nLp~~~t~~~l~~~F~~~~G-~v~~v~i~~ 44 (104)
T 2dhg_A 11 SLFVGDLTPDVDDGMLYEFFVKVYP-SCRGGKVVL 44 (104)
T ss_dssp CEEEECCCTTCCHHHHHHHHHHHCT-TEEEEEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCC-CeEEEEEEE
Confidence 5566678999999999999999787 467777664
No 34
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=51.37 E-value=16 Score=24.57 Aligned_cols=38 Identities=21% Similarity=0.351 Sum_probs=32.5
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCc
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGK 67 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK 67 (169)
..+.+.|++..|=.++|+.|+...++++...+.+ +.|+
T Consensus 20 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~-~~Gk 57 (88)
T 1sif_A 20 KTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLI-FAGK 57 (88)
T ss_dssp CEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEE-ETTE
T ss_pred CEEEEEECCCChHHHHHHHHHHHHCcChhhEEEE-ECCE
Confidence 5688999999999999999999999999877764 4453
No 35
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=51.12 E-value=25 Score=24.34 Aligned_cols=38 Identities=13% Similarity=0.206 Sum_probs=32.9
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCc
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGK 67 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK 67 (169)
..+.+.|++..|=.++|+.|+...|+++...+.+ +.|+
T Consensus 35 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~Gk 72 (101)
T 2klc_A 35 EKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLI-FAGK 72 (101)
T ss_dssp CEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEE-ETTE
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEE-ECCE
Confidence 5688999999999999999999999999887764 4564
No 36
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=50.92 E-value=57 Score=22.32 Aligned_cols=34 Identities=21% Similarity=0.106 Sum_probs=27.3
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeee
Q 030915 28 ITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLN 63 (169)
Q Consensus 28 ~n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~ 63 (169)
...++-.++.++|..+|+++++. || +|.+|+...
T Consensus 12 ~~lfV~~Lp~~~te~~L~~~F~~-~G-~v~~v~i~~ 45 (103)
T 1s79_A 12 RSVYIKGFPTDATLDDIKEWLED-KG-QVLNIQMRR 45 (103)
T ss_dssp GCEEEECCCTTCCHHHHHHHHHT-SS-CEEEEEEEC
T ss_pred CEEEEECCCCCCCHHHHHHHHhh-cC-CEEEEEEEE
Confidence 35567778999999999999987 67 688888764
No 37
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=50.75 E-value=16 Score=24.88 Aligned_cols=38 Identities=18% Similarity=0.228 Sum_probs=32.6
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCc
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGK 67 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK 67 (169)
..+.+.|++..|=.++|+.|+...|+++...+.+ +.|+
T Consensus 28 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~Gk 65 (93)
T 2l7r_A 28 ELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVL-LAGA 65 (93)
T ss_dssp SEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEE-ETTE
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEE-ECCE
Confidence 5789999999999999999999999998877764 4453
No 38
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=50.67 E-value=12 Score=25.72 Aligned_cols=39 Identities=18% Similarity=0.251 Sum_probs=32.7
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCc
Q 030915 28 ITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGK 67 (169)
Q Consensus 28 ~n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK 67 (169)
..++.+.|++.+|=.++|+.|+...||++...+.+ +.|+
T Consensus 26 g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~-~~Gk 64 (95)
T 1v86_A 26 KTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVM-YKGL 64 (95)
T ss_dssp TEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCB-SSSB
T ss_pred CEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEE-ECCe
Confidence 35688999999999999999999999998777665 4554
No 39
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=50.61 E-value=11 Score=26.38 Aligned_cols=40 Identities=23% Similarity=0.280 Sum_probs=34.0
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCcc
Q 030915 28 ITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKK 68 (169)
Q Consensus 28 ~n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK~ 68 (169)
...+.+.|++..|=.++|+.|+..+|+++...+. ++.|+.
T Consensus 11 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL-i~~Gk~ 50 (106)
T 3m62_B 11 KEKVPLDLEPSNTILETKTKLAQSISCEESQIKL-IYSGKV 50 (106)
T ss_dssp CCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEE-EETTEE
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEE-EECCEE
Confidence 4668899999999999999999999999988764 466753
No 40
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=50.41 E-value=24 Score=23.67 Aligned_cols=39 Identities=15% Similarity=0.169 Sum_probs=33.3
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCc
Q 030915 28 ITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGK 67 (169)
Q Consensus 28 ~n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK 67 (169)
...+.+.|++..|=.++|+.|+...|+++...+.. +.|+
T Consensus 20 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~Gk 58 (84)
T 2kk8_A 20 GSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLI-VDGI 58 (84)
T ss_dssp SCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEE-ETTE
T ss_pred CcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEE-ECCE
Confidence 46788999999999999999999999999887764 4564
No 41
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.24 E-value=46 Score=21.05 Aligned_cols=45 Identities=7% Similarity=0.169 Sum_probs=32.2
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCcccccCCcccCCCCceEEEEEcCCC
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLKNP 91 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK~kR~~~~~gk~~~~KKAyVtL~~g 91 (169)
..++-.++..+|..+|++.++. ||- |..|...... --|||++...
T Consensus 14 ~l~V~~l~~~~t~~~l~~~f~~-~G~-i~~~~~~~~k----------------g~afV~f~~~ 58 (85)
T 2ytc_A 14 TLYVGGLGDTITETDLRNHFYQ-FGE-IRTITVVQRQ----------------QCAFIQFATR 58 (85)
T ss_dssp CEEEECCTTTSCHHHHHHHHHT-TSC-EEEEEEEGGG----------------TEEEEEESSH
T ss_pred EEEEcCCCCCCCHHHHHHHHHh-CCC-EeEEEEECCC----------------CEEEEEECCH
Confidence 4556678899999999999987 553 6777666321 2588887743
No 42
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=50.04 E-value=21 Score=24.20 Aligned_cols=38 Identities=26% Similarity=0.405 Sum_probs=32.7
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCc
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGK 67 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK 67 (169)
..+.+.|++..|=.++|+.|+...|+++...+.+ +.|+
T Consensus 11 ~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~-~~Gk 48 (98)
T 1yx5_B 11 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAGK 48 (98)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEE-ETTE
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEE-ECCE
Confidence 4678999999999999999999999999888765 4564
No 43
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=49.97 E-value=47 Score=23.38 Aligned_cols=33 Identities=12% Similarity=0.299 Sum_probs=24.8
Q ss_pred CCeEEE--EeCCCCCHHHHHHHHHHHhCCceeEEEee
Q 030915 28 ITEIAL--KTIPSASKIEIKRVLESLYGFEVDKVRTL 62 (169)
Q Consensus 28 ~n~~~F--~V~~~atK~eIK~alekiY~VkV~kVnT~ 62 (169)
++...| ..+.++|..||++.++. || +|.+|..+
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~-fG-~V~~v~i~ 54 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQE-FG-PISYVVVM 54 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGG-GS-CEEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhc-cC-CEEEEEEE
Confidence 455555 46778999999999987 67 57788765
No 44
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=49.65 E-value=47 Score=21.97 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=25.9
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeec
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNM 64 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~ 64 (169)
..++-.++..+|..+|+++|+. || +|..|.....
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~ 50 (107)
T 2cph_A 17 KILVRNIPFQANQREIRELFST-FG-ELKTVRLPKK 50 (107)
T ss_dssp CEEEESCCTTCCHHHHHHHHHT-TS-CEEEEECCCC
T ss_pred EEEEeCCCCcCCHHHHHHHHHc-cC-CeEEEEEecC
Confidence 4455568889999999999987 66 5777776543
No 45
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.85 E-value=38 Score=22.53 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=33.7
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecC--CcccccCCcccCCCCceEEEEEcCCCCc
Q 030915 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNME--GKKKKRGGLLIAKPDYKKAYVTLKNPLS 93 (169)
Q Consensus 31 ~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~--GK~kR~~~~~gk~~~~KKAyVtL~~g~~ 93 (169)
|+-.++..+|..||+++|+. || +|..|..+.-+ |+ ..--|||++.....
T Consensus 20 ~V~nlp~~~t~~~l~~~F~~-~G-~v~~v~i~~~~~~g~------------~~g~afV~f~~~~~ 70 (105)
T 2dh8_A 20 FVGGLDWSTTQETLRSYFSQ-YG-EVVDCVIMKDKTTNQ------------SRGFGFVKFKDPNC 70 (105)
T ss_dssp CCBSCCTTCCHHHHHHHHHT-TS-CEEEEEEEECSSSCC------------EEEEEEEEESSTTH
T ss_pred EEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEeeCCCCCC------------cceEEEEEECCHHH
Confidence 34457889999999999988 55 67777776432 21 11269999886553
No 46
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=47.61 E-value=20 Score=23.90 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=32.5
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCc
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGK 67 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK 67 (169)
..+.+.|++..|=.++|+.|+...|+++...+.+ +.|+
T Consensus 15 ~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~-~~Gk 52 (88)
T 2hj8_A 15 RSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLT-FEGK 52 (88)
T ss_dssp CEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEE-SSSS
T ss_pred CEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEE-ECCE
Confidence 5678999999999999999999999999887765 4453
No 47
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=47.58 E-value=33 Score=27.07 Aligned_cols=34 Identities=6% Similarity=0.064 Sum_probs=27.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHhCC-ceeEEEeeec
Q 030915 30 EIALKTIPSASKIEIKRVLESLYGF-EVDKVRTLNM 64 (169)
Q Consensus 30 ~~~F~V~~~atK~eIK~alekiY~V-kV~kVnT~~~ 64 (169)
.|+-.++..+|..+|+++|+. ||+ +|.+|.++.-
T Consensus 71 lfVgnL~~~~te~~L~~~F~~-~G~~~v~~v~i~~d 105 (229)
T 3q2s_C 71 LYIGNLTWWTTDEDLTEAVHS-LGVNDILEIKFFEN 105 (229)
T ss_dssp EEEESCCTTCCHHHHHHHHHT-TTCCCEEEEEEEEC
T ss_pred EEEeCCCCCCCHHHHHHHHHH-HCCcceEEEEEEec
Confidence 455567889999999999965 776 8999988753
No 48
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.43 E-value=37 Score=22.30 Aligned_cols=32 Identities=13% Similarity=0.203 Sum_probs=24.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeee
Q 030915 30 EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLN 63 (169)
Q Consensus 30 ~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~ 63 (169)
.++-.++..+|..||+++|+. || +|..|..+.
T Consensus 13 l~V~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~ 44 (99)
T 2dgs_A 13 IFVGGIPHNCGETELREYFKK-FG-VVTEVVMIY 44 (99)
T ss_dssp EEEESCCSSCCHHHHHHHHSS-SS-CEEEEEECC
T ss_pred EEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEEe
Confidence 345557889999999999988 55 577777653
No 49
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=46.46 E-value=26 Score=22.99 Aligned_cols=38 Identities=16% Similarity=0.240 Sum_probs=31.9
Q ss_pred CeEEE-EeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCc
Q 030915 29 TEIAL-KTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGK 67 (169)
Q Consensus 29 n~~~F-~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK 67 (169)
..+++ .|++..|=.++|+.|+...++++...+.+ +.|+
T Consensus 19 ~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~-~~gk 57 (89)
T 1wy8_A 19 KTCTIEDVSRKATIEELRERVWALFDVRPECQRLF-YRGK 57 (89)
T ss_dssp CEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEE-ETTE
T ss_pred ceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEE-ECCe
Confidence 46889 59999999999999999999999887764 3453
No 50
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=46.08 E-value=26 Score=22.45 Aligned_cols=39 Identities=21% Similarity=0.254 Sum_probs=33.2
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCc
Q 030915 28 ITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGK 67 (169)
Q Consensus 28 ~n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK 67 (169)
...++|.|++..|=.++|+.++...|+++...+. ++.|+
T Consensus 13 g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL-~~~G~ 51 (79)
T 2uyz_B 13 SSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRF-LFEGQ 51 (79)
T ss_dssp CCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEE-EETTE
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHCCCcccEEE-EECCE
Confidence 3578999999999999999999999999987765 55664
No 51
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=46.07 E-value=33 Score=24.05 Aligned_cols=46 Identities=15% Similarity=0.098 Sum_probs=35.2
Q ss_pred eeecCCCCcccCCeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEee
Q 030915 17 IKLLMPNTFQNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTL 62 (169)
Q Consensus 17 ikpv~tEK~~~~n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~ 62 (169)
+.+.++-.......+...|++..|=.++|+-|+...|+++..-+..
T Consensus 15 v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi 60 (97)
T 2kj6_A 15 VHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALE 60 (97)
T ss_dssp EEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEE
T ss_pred EEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEE
Confidence 3344443332334688999999999999999999999999877765
No 52
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=45.78 E-value=16 Score=24.62 Aligned_cols=39 Identities=10% Similarity=0.135 Sum_probs=32.1
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCc
Q 030915 28 ITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGK 67 (169)
Q Consensus 28 ~n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK 67 (169)
...+.+.|++..|=.++|+.|+...++++...+.+ +.|+
T Consensus 26 g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~-~~Gk 64 (96)
T 1wx8_A 26 QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLI-FTGK 64 (96)
T ss_dssp SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCE-ETTE
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEE-ECCE
Confidence 35788999999999999999999999998776553 4453
No 53
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=45.06 E-value=34 Score=24.83 Aligned_cols=38 Identities=13% Similarity=0.235 Sum_probs=32.8
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCc
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGK 67 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK 67 (169)
..+.+.|++..|=.++|+.|+...|+++...+.+ +.|+
T Consensus 42 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~Gk 79 (125)
T 1j8c_A 42 EKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLI-FAGK 79 (125)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEE-ETTE
T ss_pred eEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEE-ECCE
Confidence 5688999999999999999999999999887764 4564
No 54
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.00 E-value=61 Score=21.00 Aligned_cols=31 Identities=16% Similarity=0.133 Sum_probs=24.6
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCceeEEE
Q 030915 28 ITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60 (169)
Q Consensus 28 ~n~~~F~V~~~atK~eIK~alekiY~VkV~kVn 60 (169)
...++-.++..+|..+|++++.. || +|..|+
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~-~G-~v~~~~ 46 (96)
T 2e44_A 16 RKLQIRNIPPHLQWEVLDSLLVQ-YG-VVESCE 46 (96)
T ss_dssp CCEEEEEECSSSCHHHHHHHHHH-HS-CEEEEE
T ss_pred CEEEEEcCCCCCCHHHHHHHHHh-cC-CeEEEE
Confidence 35678889999999999999987 45 366664
No 55
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=44.92 E-value=28 Score=24.25 Aligned_cols=53 Identities=17% Similarity=0.124 Sum_probs=39.4
Q ss_pred cCCcceeecCCCCcccCCeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeec
Q 030915 12 FTNLPIKLLMPNTFQNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNM 64 (169)
Q Consensus 12 lpni~ikpv~tEK~~~~n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~ 64 (169)
.|+-.|.+.++-.......+...|++..|=.++|+-|+.+.|+++..-+..-.
T Consensus 11 ~~~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~ 63 (95)
T 2kjr_A 11 GKSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVF 63 (95)
T ss_dssp CCCCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEE
T ss_pred CCCCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEe
Confidence 34455666554332222368899999999999999999999999988877643
No 56
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=44.80 E-value=11 Score=29.53 Aligned_cols=34 Identities=24% Similarity=0.388 Sum_probs=26.0
Q ss_pred CeEEEEeC----CCCCHHHHHHHHHHHhCCceeEEEee
Q 030915 29 TEIALKTI----PSASKIEIKRVLESLYGFEVDKVRTL 62 (169)
Q Consensus 29 n~~~F~V~----~~atK~eIK~alekiY~VkV~kVnT~ 62 (169)
.+++|.|. +..+|.||++.|.++|+++..-|=..
T Consensus 19 kE~v~dV~Hpg~aTpSk~eIrekLAkmy~~~~d~VvV~ 56 (149)
T 2xzm_P 19 RQLSLDVLHPDSPTASKEKIREELAKQLKVDARNVVVY 56 (149)
T ss_dssp EEEEEEEECSSSCSCCHHHHHHHHHHHHTCCGGGEEEE
T ss_pred EEEEEEEEeCCCCCCCHHHHHHHHHHHHCCCCCEEEEE
Confidence 56777543 36799999999999999976655554
No 57
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=44.58 E-value=43 Score=24.42 Aligned_cols=39 Identities=18% Similarity=0.175 Sum_probs=33.4
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCc
Q 030915 28 ITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGK 67 (169)
Q Consensus 28 ~n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK 67 (169)
-.++++.|++..|=.++|+.|+...|+++...+.. +.|+
T Consensus 91 g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~-~~G~ 129 (159)
T 3rt3_B 91 GRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLT-FEGK 129 (159)
T ss_dssp SCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEE-ETTE
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEE-ECCe
Confidence 36789999999999999999999999999877654 5564
No 58
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=44.36 E-value=53 Score=23.17 Aligned_cols=35 Identities=9% Similarity=-0.083 Sum_probs=26.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHHH---hCC------ceeEEEeeec
Q 030915 30 EIALKTIPSASKIEIKRVLESL---YGF------EVDKVRTLNM 64 (169)
Q Consensus 30 ~~~F~V~~~atK~eIK~aleki---Y~V------kV~kVnT~~~ 64 (169)
.++-.+++++|..||++.++.. .|+ .|.++.+...
T Consensus 7 l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~ 50 (172)
T 2g4b_A 7 LYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD 50 (172)
T ss_dssp EEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT
T ss_pred EEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC
Confidence 3455688999999999999986 365 7888877543
No 59
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=44.26 E-value=52 Score=21.10 Aligned_cols=46 Identities=13% Similarity=0.003 Sum_probs=30.9
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCcccccCCcccCCCCceEEEEEcCC
Q 030915 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLKN 90 (169)
Q Consensus 31 ~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK~kR~~~~~gk~~~~KKAyVtL~~ 90 (169)
++-.++..+|..||++.++. || +|..|......|+ ..--|||++..
T Consensus 12 ~V~nlp~~~t~~~l~~~f~~-~G-~v~~~~i~~~~g~------------~~g~afV~f~~ 57 (92)
T 2dgv_A 12 FVRNLPFDFTWKMLKDKFNE-CG-HVLYADIKMENGK------------SKGCGVVKFES 57 (92)
T ss_dssp EECSCCTTCCHHHHHHHHHT-TS-CEEEEEEEESSSC------------EEEEEEEEESS
T ss_pred EEeCCCCCCCHHHHHHHHHh-cC-CEEEEEEEccCCC------------cceEEEEEECC
Confidence 34447789999999999988 55 5667766643332 11258888763
No 60
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=43.88 E-value=53 Score=22.10 Aligned_cols=50 Identities=12% Similarity=0.192 Sum_probs=31.3
Q ss_pred eEEEEeCCCC------CHHHHHHHHHHHhCCceeEEEeeecCCcccccCCcccCCCCceEEEEEcCCCCc
Q 030915 30 EIALKTIPSA------SKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLKNPLS 93 (169)
Q Consensus 30 ~~~F~V~~~a------tK~eIK~alekiY~VkV~kVnT~~~~GK~kR~~~~~gk~~~~KKAyVtL~~g~~ 93 (169)
.++-.++..+ |..+|++++.+ || +|.+|......|+. .--|||++.....
T Consensus 18 l~V~nLp~~~~~~~~~t~~~l~~~F~~-~G-~v~~v~i~~~~g~~------------~G~afV~f~~~~~ 73 (105)
T 2nlw_A 18 IVVDNVPQVGPDRLEKLKNVIHKIFSK-FG-KITNDFYPEEDGKT------------KGYIFLEYASPAH 73 (105)
T ss_dssp EEEESCCCCCTTTTTHHHHHHHHHHGG-GS-CEEEEECCCBTTBS------------CCEEEEEECSSSH
T ss_pred EEEeCCCcchhhhhHHHHHHHHHHHhc-CC-CEEEEEeeCCCCCe------------eeEEEEEECCHHH
Confidence 3444566666 78999999977 66 47777665222221 1258888876553
No 61
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=43.38 E-value=30 Score=23.91 Aligned_cols=37 Identities=11% Similarity=0.226 Sum_probs=31.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCc
Q 030915 30 EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGK 67 (169)
Q Consensus 30 ~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK 67 (169)
++.+.|++..|=.++|+.|+...++++...+.+ +.|+
T Consensus 28 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~Gk 64 (106)
T 1wx7_A 28 KEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLI-FAGK 64 (106)
T ss_dssp EEEEEEETTCCHHHHHHHHHHHHTCCTTTEEEE-ETTE
T ss_pred cEEEEECCCCcHHHHHHHHHHHHCcChhhEEEE-ECCE
Confidence 468899999999999999999999999887764 4553
No 62
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=43.11 E-value=64 Score=20.71 Aligned_cols=33 Identities=12% Similarity=0.217 Sum_probs=25.6
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeee
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLN 63 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~ 63 (169)
..++-.++..+|..+|++.++. || +|..|....
T Consensus 17 ~l~v~nlp~~~t~~~l~~~f~~-~G-~v~~v~i~~ 49 (95)
T 2cqc_A 17 CLGVFGLSLYTTERDLREVFSK-YG-PIADVSIVY 49 (95)
T ss_dssp CEEEESCCSSCCHHHHHHHHHT-TS-CEEEEEEEE
T ss_pred EEEEECCCCCCCHHHHHHHHHh-cC-CeeEEEEEE
Confidence 4456668899999999999988 66 577777654
No 63
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=42.46 E-value=37 Score=23.51 Aligned_cols=30 Identities=17% Similarity=0.210 Sum_probs=23.2
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCceeEEEee
Q 030915 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTL 62 (169)
Q Consensus 31 ~~F~V~~~atK~eIK~alekiY~VkV~kVnT~ 62 (169)
|+-.++.++|..||+++++. || +|.+|..+
T Consensus 19 ~V~nLp~~~te~~L~~~F~~-fG-~V~~v~i~ 48 (104)
T 1wex_A 19 HVRGLCESVVEADLVEALEK-FG-TICYVMMM 48 (104)
T ss_dssp EEESCCSSCCHHHHHHHHTT-TS-CEEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHh-CC-CEEEEEEE
Confidence 34457789999999999987 77 67777654
No 64
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=42.31 E-value=41 Score=24.53 Aligned_cols=40 Identities=20% Similarity=0.118 Sum_probs=34.6
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeec-CCc
Q 030915 28 ITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNM-EGK 67 (169)
Q Consensus 28 ~n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~-~GK 67 (169)
-.++++.|++..|=.++|+.|+...|+++..-+...+ .|+
T Consensus 12 g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~ 52 (159)
T 3rt3_B 12 GNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGV 52 (159)
T ss_dssp SCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCC
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCC
Confidence 3568899999999999999999999999988877746 564
No 65
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=42.14 E-value=54 Score=23.22 Aligned_cols=33 Identities=15% Similarity=0.082 Sum_probs=25.4
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeee
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLN 63 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~ 63 (169)
+.|+=.++.++|..||+++++. || +|.+|..+.
T Consensus 18 ~LfV~nLp~~vte~dL~~lF~~-fG-~V~~v~i~~ 50 (105)
T 1sjq_A 18 VIHIRKLPIDVTEGEVISLGLP-FG-KVTNLLMLK 50 (105)
T ss_dssp EEEECSCCTTSCHHHHHHHHHH-HC-CEEEEEEET
T ss_pred EEEEeCCCCCCCHHHHHHHHHh-cC-CEEEEEEEc
Confidence 3445558889999999999987 77 588887653
No 66
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=41.96 E-value=33 Score=24.35 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=33.7
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCc
Q 030915 28 ITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGK 67 (169)
Q Consensus 28 ~n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK 67 (169)
-..+.+.|++..|=.++|+.|+...|+++...+.+ +.|+
T Consensus 19 G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~Gk 57 (114)
T 2kdi_A 19 GKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI-WAGK 57 (114)
T ss_dssp CCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE-ETTE
T ss_pred CcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEE-ECCE
Confidence 36688999999999999999999999999988875 4464
No 67
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=41.94 E-value=37 Score=21.56 Aligned_cols=36 Identities=19% Similarity=0.272 Sum_probs=30.8
Q ss_pred EEEE-eCCCCCHHHHHHHHHHHhCCceeEEEeeecCCc
Q 030915 31 IALK-TIPSASKIEIKRVLESLYGFEVDKVRTLNMEGK 67 (169)
Q Consensus 31 ~~F~-V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK 67 (169)
+.+. |++..|=.++|+.|+...|+++...+.. +.|+
T Consensus 16 ~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~-~~g~ 52 (78)
T 2faz_A 16 HTVDSLSRLTKVEELRRKIQELFHVEPGLQRLF-YRGK 52 (78)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE-ETTE
T ss_pred EEEeccCCCCCHHHHHHHHHHHHCcChhhEEEE-ECCE
Confidence 4788 9999999999999999999999888765 4553
No 68
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=41.93 E-value=48 Score=23.99 Aligned_cols=33 Identities=9% Similarity=-0.065 Sum_probs=25.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHHH---hCC------ceeEEEee
Q 030915 30 EIALKTIPSASKIEIKRVLESL---YGF------EVDKVRTL 62 (169)
Q Consensus 30 ~~~F~V~~~atK~eIK~aleki---Y~V------kV~kVnT~ 62 (169)
.|+-.++.++|..||+++++.. .|+ .|.++.+.
T Consensus 7 l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~ 48 (198)
T 2yh0_A 7 LYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN 48 (198)
T ss_dssp EEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec
Confidence 4555688899999999999986 376 67777774
No 69
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=41.80 E-value=56 Score=21.36 Aligned_cols=32 Identities=13% Similarity=0.223 Sum_probs=24.2
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEee
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTL 62 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~ 62 (169)
..++-.++..+|..||++.++. || +|..|...
T Consensus 19 ~l~V~nlp~~~t~~~l~~~F~~-~G-~v~~v~~~ 50 (97)
T 1why_A 19 RLWVGGLGPNTSLAALAREFDR-FG-SIRTIDHV 50 (97)
T ss_dssp CEEEECCCSSCCHHHHHHHHHT-TS-CEEEEEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHHh-cC-CeeEEEEe
Confidence 4456668899999999999987 55 46666554
No 70
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=41.71 E-value=53 Score=22.53 Aligned_cols=50 Identities=8% Similarity=0.095 Sum_probs=35.0
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCcccccCCcccCCCCceEEEEEcCCCC
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLKNPL 92 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK~kR~~~~~gk~~~~KKAyVtL~~g~ 92 (169)
|.|+=.++..+|..+|++++.. || +|.+|+.+.-.+.. . --|||++...+
T Consensus 7 ~lfV~nLp~~~te~~L~~~F~~-~G-~v~~v~i~~d~~~~------k------g~afV~f~~~~ 56 (115)
T 4f25_A 7 NIFIKNLDKSIDNKALYDTFSA-FG-NILSCKVVCDENGS------K------GYGFVHFETQE 56 (115)
T ss_dssp EEEEESCCTTCCHHHHHHHHGG-GS-CEEEEEEEEETTEE------E------EEEEEEESCHH
T ss_pred EEEECCCCCCCCHHHHHHHHhc-cC-CEEEEEEeecCCCC------C------ceEEEEECCHH
Confidence 4556668899999999999987 66 57888877544321 0 24888877443
No 71
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=41.63 E-value=36 Score=23.78 Aligned_cols=38 Identities=26% Similarity=0.405 Sum_probs=32.6
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCc
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGK 67 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK 67 (169)
..+.+.|++..|=.++|+.|+...++++...+.+ +.|+
T Consensus 46 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~Gk 83 (111)
T 2ojr_A 46 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAGK 83 (111)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEE-ETTE
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEE-ECCE
Confidence 5688999999999999999999999999887764 4553
No 72
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=41.43 E-value=33 Score=23.69 Aligned_cols=37 Identities=11% Similarity=0.226 Sum_probs=31.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCc
Q 030915 30 EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGK 67 (169)
Q Consensus 30 ~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK 67 (169)
++.+.|++..|=.++|+.|+...|+++...+.+ +.|+
T Consensus 33 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~Gk 69 (100)
T 1yqb_A 33 KEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLI-FAGK 69 (100)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEE-ETTE
T ss_pred cEEEEECCCCcHHHHHHHHHHHHCcChhhEEEE-ECCE
Confidence 468899999999999999999999999888764 4554
No 73
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=41.40 E-value=31 Score=22.95 Aligned_cols=31 Identities=13% Similarity=0.133 Sum_probs=24.8
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeec
Q 030915 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNM 64 (169)
Q Consensus 31 ~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~ 64 (169)
++-.++..+|..||++.++.+ + |..|..+.-
T Consensus 19 ~V~nLp~~~t~~~l~~~F~~~-g--i~~v~i~~~ 49 (103)
T 2dng_A 19 YVGNLPFNTVQGDIDAIFKDL-S--IRSVRLVRD 49 (103)
T ss_dssp EEESCCTTCCHHHHHHHTTTS-C--EEEEEEEEC
T ss_pred EEeCCCCCCCHHHHHHHHHhC-C--ceEEEEeec
Confidence 444578899999999999987 6 888887743
No 74
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=41.22 E-value=39 Score=22.25 Aligned_cols=45 Identities=16% Similarity=0.286 Sum_probs=31.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCcccccCCcccCCCCceEEEEEcCCCC
Q 030915 30 EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLKNPL 92 (169)
Q Consensus 30 ~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK~kR~~~~~gk~~~~KKAyVtL~~g~ 92 (169)
.++-.++..+|..+|++.++. || +|..|....-. --|||++....
T Consensus 18 l~V~nlp~~~t~~~l~~~F~~-~G-~i~~v~~~~~k----------------g~afV~f~~~~ 62 (99)
T 2cpj_A 18 LFVGNLPPDITEEEMRKLFEK-YG-KAGEVFIHKDK----------------GFGFIRLETRT 62 (99)
T ss_dssp EEEESCCTTCCHHHHHHHTST-TC-CCSEEEEETTT----------------TEEEEECSSSH
T ss_pred EEEeCCCCCCCHHHHHHHHhh-cC-CeEEEEEecCC----------------CEEEEEECCHH
Confidence 345568889999999999987 45 56677665221 36888887544
No 75
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=40.24 E-value=33 Score=23.46 Aligned_cols=37 Identities=5% Similarity=0.147 Sum_probs=32.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCc
Q 030915 30 EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGK 67 (169)
Q Consensus 30 ~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK 67 (169)
++.+.|++..|=.++|+.|+...|+++...+.+ +.|+
T Consensus 26 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~Gk 62 (94)
T 2kan_A 26 QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLY-YSGI 62 (94)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEE-ETTE
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEE-ECCE
Confidence 788999999999999999999999999888764 5564
No 76
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.04 E-value=31 Score=25.72 Aligned_cols=72 Identities=22% Similarity=0.251 Sum_probs=49.6
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCcccccCC---cccCCCCceEEEEEcCCCCccCCCCCccccch
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGG---LLIAKPDYKKAYVTLKNPLSLSEDLFPIRVIQ 105 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK~kR~~~---~~gk~~~~KKAyVtL~~g~~i~PdlF~~k~~~ 105 (169)
..++..++++++=.|+|+.|...+++++...+ +++.||.=+... ..|=+++-=.-.|.. +.+||.||.+.+.
T Consensus 27 ~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qr-LIy~GKiLKD~eTL~~~gIk~g~TIhLvi~----s~~p~~~p~~~~~ 101 (118)
T 2daf_A 27 QEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQ-IRYSGKILKNNETLVQHGVKPQEIVQVEIF----STNPDLYPVRRID 101 (118)
T ss_dssp CEEEEEECSSSCSHHHHHHHHHHHTCCTTTEE-EEETTEEECSSCCHHHHSCCSSCEEEEEEE----ESCTTTSCCCCCC
T ss_pred cEEEEEeCCCCcHHHHHHHHHhhhCCChHHEE-EEECCeEcCCcchHHHcCCCCCCEEEEEEe----cCCCccCcceecc
Confidence 56888899999999999999999999998877 678887544321 122222222222222 2458899988765
No 77
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=39.88 E-value=65 Score=21.66 Aligned_cols=32 Identities=19% Similarity=0.168 Sum_probs=24.6
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEee
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTL 62 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~ 62 (169)
..|+-.++.++|..||++++.. || +|..|.+.
T Consensus 17 ~l~V~nLp~~~t~~~l~~~F~~-~G-~i~~~~i~ 48 (108)
T 1x4c_A 17 RVVVSGLPPSGSWQDLKDHMRE-AG-DVCYADVY 48 (108)
T ss_dssp EEEEESCCSSCCHHHHHHHHGG-GS-CEEEEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHh-cC-CEeEEEEe
Confidence 4456668899999999999986 55 57777665
No 78
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=39.72 E-value=29 Score=23.98 Aligned_cols=37 Identities=11% Similarity=0.151 Sum_probs=31.4
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCC
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEG 66 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~G 66 (169)
..+++.|++++|=.++|+.|+...|+++...+.+ +.|
T Consensus 22 ~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~-~~g 58 (102)
T 1v5o_A 22 VTFSLQVNPDFELSNFRVLCELESGVPAEEAQIV-YME 58 (102)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEE-ETT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEE-ECC
Confidence 5788999999999999999999999998776653 445
No 79
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=39.60 E-value=79 Score=20.78 Aligned_cols=33 Identities=12% Similarity=-0.081 Sum_probs=25.0
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeee
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLN 63 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~ 63 (169)
..++-.++..+|..+|+++|+. || +|..|....
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~ 49 (105)
T 1x5u_A 17 TVYVGGLDEKVSEPLLWELFLQ-AG-PVVNTHMPK 49 (105)
T ss_dssp EEEEECCCTTCCHHHHHHHHHT-TS-CEEEEECCB
T ss_pred EEEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEEe
Confidence 3445568889999999999988 45 577777653
No 80
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=38.95 E-value=46 Score=22.84 Aligned_cols=30 Identities=17% Similarity=0.264 Sum_probs=22.7
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCceeEEEee
Q 030915 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTL 62 (169)
Q Consensus 31 ~~F~V~~~atK~eIK~alekiY~VkV~kVnT~ 62 (169)
|+-.++..+|..||++.++. || +|..|...
T Consensus 14 ~V~nLp~~~te~~L~~~F~~-~G-~i~~v~i~ 43 (111)
T 1whx_A 14 LAKNLPAGTLAAEIQETFSR-FG-SLGRVLLP 43 (111)
T ss_dssp EEESCCTTCCHHHHHHHHHT-TS-CEEEEECC
T ss_pred EEeCCCCCCCHHHHHHHHHh-cC-CEEEEEEe
Confidence 44457889999999999987 66 56666654
No 81
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=38.79 E-value=71 Score=20.00 Aligned_cols=32 Identities=3% Similarity=0.055 Sum_probs=24.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeee
Q 030915 30 EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLN 63 (169)
Q Consensus 30 ~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~ 63 (169)
.++-.++..+|..+|++.++. || +|..|....
T Consensus 10 l~V~nl~~~~~~~~l~~~f~~-~G-~i~~v~i~~ 41 (85)
T 3mdf_A 10 LYVGGLAEEVDDKVLHAAFIP-FG-DITDIQIPL 41 (85)
T ss_dssp EEEECCCTTCCHHHHHHHHGG-GS-CEEEEECCE
T ss_pred EEEECCCCCCCHHHHHHHHhc-cC-CEEEEEEEE
Confidence 345567889999999999987 66 677777653
No 82
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=38.12 E-value=79 Score=20.78 Aligned_cols=49 Identities=12% Similarity=0.152 Sum_probs=32.7
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCcccccCCcccCCCCceEEEEEcCCC
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLKNP 91 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK~kR~~~~~gk~~~~KKAyVtL~~g 91 (169)
..++-.++..+|..+|+++|+. || +|..|....-.+. ..--|||++...
T Consensus 17 ~l~V~nlp~~~t~~~l~~~f~~-~G-~v~~v~i~~~~~~------------~~g~afV~f~~~ 65 (103)
T 2cq3_A 17 RLHVSNIPFRFRDPDLRQMFGQ-FG-KILDVEIIFNERG------------SKGFGFVTFENS 65 (103)
T ss_dssp EEEEESCCTTCCHHHHHHHGGG-TS-CEEEEEEECCTTT------------TCCEEEEEESCH
T ss_pred EEEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEEecCCC------------CcEEEEEEECCH
Confidence 3345557889999999999987 55 5677776643321 113688887643
No 83
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=38.07 E-value=71 Score=20.54 Aligned_cols=50 Identities=18% Similarity=0.161 Sum_probs=33.9
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecC-CcccccCCcccCCCCceEEEEEcCCCC
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNME-GKKKKRGGLLIAKPDYKKAYVTLKNPL 92 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~-GK~kR~~~~~gk~~~~KKAyVtL~~g~ 92 (169)
..++-.++..+|..+|+++++. || +|..|....-. |+ ..--|||++....
T Consensus 18 ~l~v~nlp~~~~~~~l~~~F~~-~G-~i~~v~i~~~~~g~------------~~g~afV~f~~~~ 68 (95)
T 2ywk_A 18 TVFVGNLEARVREEILYELFLQ-AG-PLTKVTICKDREGK------------PKSFGFVCFKHPE 68 (95)
T ss_dssp EEEEECCCTTCCHHHHHHHHGG-GS-CEEEEEEEECTTSC------------EEEEEEEEESSTH
T ss_pred EEEEECCCCCCCHHHHHHHHHh-cC-CEEEEEEEECCCCC------------CceEEEEEECCHH
Confidence 3455568889999999999988 55 57777765432 22 1136898887544
No 84
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=38.05 E-value=68 Score=21.41 Aligned_cols=31 Identities=16% Similarity=0.256 Sum_probs=23.2
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEe
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRT 61 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT 61 (169)
..++-.++..+|..||++.|+. || +|..|..
T Consensus 24 ~l~V~nLp~~~t~~~l~~~F~~-~G-~v~~~~i 54 (109)
T 1x4a_A 24 RIYVGNLPPDIRTKDIEDVFYK-YG-AIRDIDL 54 (109)
T ss_dssp EEEEESCCTTCCHHHHHHHHGG-GS-CEEEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEE
Confidence 3445567889999999999988 55 4666655
No 85
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=38.05 E-value=81 Score=20.64 Aligned_cols=44 Identities=23% Similarity=0.271 Sum_probs=30.7
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCcccccCCcccCCCCceEEEEEcCCC
Q 030915 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLKNP 91 (169)
Q Consensus 31 ~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK~kR~~~~~gk~~~~KKAyVtL~~g 91 (169)
++-.++..+|..+|++.++. || +|.+|..... .+ --|||++...
T Consensus 4 ~V~nLp~~~t~~~l~~~F~~-~G-~i~~v~i~~~-~~--------------g~afV~f~~~ 47 (101)
T 2hvz_A 4 YVGNLGTGAGKGELERAFSY-YG-PLRTVWIARN-PP--------------GFAFVEFEDP 47 (101)
T ss_dssp EEECCCSSCSHHHHHHHHHH-HC-CCSEEEEESS-SS--------------SEEEEECSSH
T ss_pred EEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEeeC-CC--------------CEEEEEECCH
Confidence 34457889999999999987 45 5677776543 11 2688887643
No 86
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=37.67 E-value=46 Score=23.75 Aligned_cols=39 Identities=13% Similarity=0.243 Sum_probs=34.3
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCc
Q 030915 28 ITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGK 67 (169)
Q Consensus 28 ~n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK 67 (169)
.+++.+.|++..|=.++|+.|+.-+|+++...+.+ +.||
T Consensus 29 ~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI-~~GK 67 (100)
T 1wju_A 29 DRKNLLETRLHITGRELRSKIAETFGLQENYIKIV-INKK 67 (100)
T ss_dssp SSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEE-ETTE
T ss_pred CcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEE-eCCe
Confidence 47899999999999999999999999998877765 7776
No 87
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=37.56 E-value=86 Score=20.75 Aligned_cols=32 Identities=13% Similarity=-0.129 Sum_probs=24.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHhCCceeEEEee
Q 030915 30 EIALKTIPSASKIEIKRVLESLYGFEVDKVRTL 62 (169)
Q Consensus 30 ~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~ 62 (169)
.|+-.++..+|..+|++.|+. ||-.|..|...
T Consensus 11 l~V~nLp~~~t~~~l~~~f~~-~G~~v~~v~i~ 42 (109)
T 2dis_A 11 LFIGGIPKMKKREEILEEIAK-VTEGVLDVIVY 42 (109)
T ss_dssp EEEECCCTTSCHHHHHHHHHH-HSTTEEEEECC
T ss_pred EEEeCCCCcCCHHHHHHHHHH-hcCCceEEEEE
Confidence 345557889999999999988 45457777665
No 88
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=36.83 E-value=37 Score=23.92 Aligned_cols=38 Identities=16% Similarity=0.135 Sum_probs=32.6
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCc
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGK 67 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK 67 (169)
..+.+.|++..|=.++|+.|+...|+++...+.+ +.|+
T Consensus 46 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~-~~Gk 83 (115)
T 1we7_A 46 QGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQ-YEGI 83 (115)
T ss_dssp EEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEE-ETTE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEE-ECCE
Confidence 5788999999999999999999999999877765 4453
No 89
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=36.75 E-value=52 Score=24.17 Aligned_cols=48 Identities=13% Similarity=0.273 Sum_probs=33.4
Q ss_pred ccCCeEEEE--eCCC-CCHHHHHHHHHHHhCCceeEEEeeecCCcccccCCcccCCCCceEEEEEcCCC
Q 030915 26 QNITEIALK--TIPS-ASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLKNP 91 (169)
Q Consensus 26 ~~~n~~~F~--V~~~-atK~eIK~alekiY~VkV~kVnT~~~~GK~kR~~~~~gk~~~~KKAyVtL~~g 91 (169)
++.+.+.+. ++.. +|+.+||.+|.. || +|..|... .|. .-|||.+..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~-~G-~V~~Vd~~--~g~--------------~tgfVrf~~~ 65 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSN-HG-EIKWIDFV--RGA--------------KEGIILFKEK 65 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCS-SC-CEEEEECC--TTC--------------SEEEEEESSC
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHh-cC-CEEEEEEe--cCC--------------CEEEEEECCC
Confidence 345666665 4777 899999999988 77 56666553 343 3499998864
No 90
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.51 E-value=83 Score=20.14 Aligned_cols=47 Identities=17% Similarity=0.172 Sum_probs=32.3
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeec-CCcccccCCcccCCCCceEEEEEcCC
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNM-EGKKKKRGGLLIAKPDYKKAYVTLKN 90 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~-~GK~kR~~~~~gk~~~~KKAyVtL~~ 90 (169)
..++-.++..+|..||+++++.. .|..|..+.- .|+. .--|||++..
T Consensus 12 ~l~v~nLp~~~t~~~l~~~F~~~---~i~~v~i~~~~~g~~------------~g~afV~f~~ 59 (91)
T 2dgw_A 12 TVKLRGAPFNVTEKNVMEFLAPL---KPVAIRIVRNAHGNK------------TGYIFVDFSN 59 (91)
T ss_dssp EEEEECCCSSCCHHHHHHHHTTS---CCSEEEEEECTTSCE------------EEEEEEECSS
T ss_pred EEEEECCCCCCCHHHHHHHHhhC---CceEEEEEECCCCCC------------ceEEEEEECC
Confidence 34455678899999999999986 5777777643 2321 1268888764
No 91
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=36.09 E-value=66 Score=23.17 Aligned_cols=32 Identities=16% Similarity=0.085 Sum_probs=24.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeee
Q 030915 30 EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLN 63 (169)
Q Consensus 30 ~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~ 63 (169)
.|+-.++.++|..||+++++. || +|.+|..+.
T Consensus 34 LfVgNLp~~vte~dL~~lF~~-fG-~V~~v~i~~ 65 (119)
T 2ad9_A 34 IHIRKLPIDVTEGEVISLGLP-FG-KVTNLLMLK 65 (119)
T ss_dssp EEEESCCTTCCHHHHHHHHTT-TS-CCCEEEEEG
T ss_pred EEEeCCCCCCCHHHHHHHHHh-cC-CEEEEEEeC
Confidence 345558889999999999987 66 477777653
No 92
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=36.07 E-value=57 Score=22.43 Aligned_cols=33 Identities=18% Similarity=0.134 Sum_probs=25.9
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEee
Q 030915 28 ITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTL 62 (169)
Q Consensus 28 ~n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~ 62 (169)
...++-.++.++|..||+++++. || +|..|.++
T Consensus 17 ~~l~V~nLp~~~t~~~l~~~F~~-~G-~v~~~~i~ 49 (115)
T 3beg_B 17 NRVVVSGLPPSGSWQDLKDHMRE-AG-DVCYADVY 49 (115)
T ss_dssp CCEEEEECCSSCCTTHHHHHHGG-GS-CEEEEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEe
Confidence 35677788999999999999986 55 57777654
No 93
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=35.59 E-value=44 Score=22.59 Aligned_cols=33 Identities=15% Similarity=0.322 Sum_probs=25.2
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeee
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLN 63 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~ 63 (169)
..++-.++..+|..||+++|+. || .|..|..+.
T Consensus 27 ~l~V~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~ 59 (114)
T 2cq4_A 27 TVFCMQLAARIRPRDLEDFFSA-VG-KVRDVRIIS 59 (114)
T ss_dssp EEEEESCCTTCCHHHHHHHHTT-TS-CEEEEEECC
T ss_pred EEEEeCCCCCCCHHHHHHHHHh-CC-CEeEEEEEe
Confidence 4456668899999999999977 55 577777653
No 94
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=35.32 E-value=22 Score=24.01 Aligned_cols=39 Identities=21% Similarity=0.417 Sum_probs=32.8
Q ss_pred CeEEE-EeCCCCCHHHHHHHHHHHhCCceeEEEeee--cCCc
Q 030915 29 TEIAL-KTIPSASKIEIKRVLESLYGFEVDKVRTLN--MEGK 67 (169)
Q Consensus 29 n~~~F-~V~~~atK~eIK~alekiY~VkV~kVnT~~--~~GK 67 (169)
..+.+ .|++.+|=.++|+.|+...||++..-+.+. +.|+
T Consensus 17 ~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk 58 (90)
T 1v5t_A 17 QEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGK 58 (90)
T ss_dssp EEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTE
T ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCc
Confidence 56778 899999999999999999999998888763 4454
No 95
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=35.10 E-value=70 Score=21.72 Aligned_cols=33 Identities=9% Similarity=0.128 Sum_probs=25.3
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeee
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLN 63 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~ 63 (169)
..++-.++..+|..+|+++++. || +|..|+...
T Consensus 27 ~lfV~nLp~~~te~~L~~~F~~-~G-~i~~v~i~~ 59 (109)
T 2rs2_A 27 KMFIGGLSWQTTQEGLREYFGQ-FG-EVKECLVMR 59 (109)
T ss_dssp CEEEESCCTTCCHHHHHHHHTT-TS-CEEEEEECC
T ss_pred EEEEeCCCCCCCHHHHHHHHHc-cC-CeEEEEEEE
Confidence 5566678999999999999987 55 467776654
No 96
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=35.06 E-value=70 Score=20.13 Aligned_cols=33 Identities=12% Similarity=0.189 Sum_probs=24.8
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecC
Q 030915 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNME 65 (169)
Q Consensus 31 ~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~ 65 (169)
++-.++..+|..||++.++. || +|..|......
T Consensus 8 ~V~nlp~~~t~~~l~~~F~~-~G-~i~~~~i~~~~ 40 (88)
T 4a8x_A 8 HIGRLTRNVTKDHIMEIFST-YG-KIKMIDMPVER 40 (88)
T ss_dssp EEECCCTTCCHHHHHHHHHT-TS-CEEEEECCEET
T ss_pred EEeCCCCCCCHHHHHHHHHh-CC-CEEEEEEEeCC
Confidence 45557889999999999987 66 66777766443
No 97
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=34.90 E-value=80 Score=20.53 Aligned_cols=32 Identities=9% Similarity=0.224 Sum_probs=23.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeee
Q 030915 30 EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLN 63 (169)
Q Consensus 30 ~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~ 63 (169)
.++-.++..+|..+|+++++. || +|..|....
T Consensus 11 l~V~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~ 42 (99)
T 1whw_A 11 LFVRNLSYTSSEEDLEKLFSA-YG-PLSELHYPI 42 (99)
T ss_dssp EEEECCCTTCCHHHHHHHHHT-TS-CEEEEECCC
T ss_pred EEEeCCCCCCCHHHHHHHHHh-cC-CEeEEEEEe
Confidence 345557889999999999986 55 566776653
No 98
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=34.49 E-value=32 Score=24.06 Aligned_cols=37 Identities=8% Similarity=0.025 Sum_probs=31.5
Q ss_pred CeEEEEeCC-CCCHHHHHHHHHHHhCCceeEEEeeecCC
Q 030915 29 TEIALKTIP-SASKIEIKRVLESLYGFEVDKVRTLNMEG 66 (169)
Q Consensus 29 n~~~F~V~~-~atK~eIK~alekiY~VkV~kVnT~~~~G 66 (169)
..+.+.|++ .+|=.++|+.|+...|+++...+.+ +.|
T Consensus 41 ~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~-~~G 78 (111)
T 1we6_A 41 QFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLS-GKA 78 (111)
T ss_dssp CCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEE-CSS
T ss_pred cEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEE-ECC
Confidence 568899998 9999999999999999998777665 344
No 99
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=34.02 E-value=33 Score=23.36 Aligned_cols=37 Identities=16% Similarity=0.264 Sum_probs=28.8
Q ss_pred cCCe-EEEEeCCCCCHHHHHHHHHHHhCCceeEEEeee
Q 030915 27 NITE-IALKTIPSASKIEIKRVLESLYGFEVDKVRTLN 63 (169)
Q Consensus 27 ~~n~-~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~ 63 (169)
..|+ ++=..++.+|..+|+++++..=.+.|.+|+...
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~ 45 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIK 45 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCC
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEe
Confidence 3344 455689999999999999985557888888764
No 100
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=33.92 E-value=25 Score=24.19 Aligned_cols=38 Identities=13% Similarity=0.258 Sum_probs=32.4
Q ss_pred CeE-EEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCc
Q 030915 29 TEI-ALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGK 67 (169)
Q Consensus 29 n~~-~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK 67 (169)
..+ .+.|++.+|=.++|+.|+...||++..-+.+ +.|+
T Consensus 17 ~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi-~~Gk 55 (96)
T 1wgg_A 17 EKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVM-VKGG 55 (96)
T ss_dssp EEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCE-ETTE
T ss_pred EEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEE-ECCc
Confidence 567 5899999999999999999999998877765 5664
No 101
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=33.67 E-value=63 Score=22.12 Aligned_cols=32 Identities=16% Similarity=0.232 Sum_probs=24.2
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeee
Q 030915 30 EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLN 63 (169)
Q Consensus 30 ~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~ 63 (169)
.|+-.++..+|..+|+++|+. || .|..|....
T Consensus 25 l~V~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~ 56 (126)
T 3ex7_B 25 LFVTGVHEEATEEDIHDKFAE-YG-EIKNIHLNL 56 (126)
T ss_dssp EEEESCCTTCCHHHHHHHHHT-TS-CEEEEECCB
T ss_pred EEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEEe
Confidence 445568889999999999987 66 567776653
No 102
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=33.63 E-value=41 Score=22.39 Aligned_cols=31 Identities=13% Similarity=0.076 Sum_probs=24.3
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeec
Q 030915 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNM 64 (169)
Q Consensus 31 ~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~ 64 (169)
|+-.++..+|..||+++|+. || |..|.....
T Consensus 19 ~V~nlp~~~t~~~l~~~F~~-~G--i~~v~i~~~ 49 (104)
T 1wi8_A 19 FLGNLPYDVTEESIKEFFRG-LN--ISAVRLPRE 49 (104)
T ss_dssp EEESCCSSCCHHHHHHHTTT-SC--EEEEECCBC
T ss_pred EEeCCCCcCCHHHHHHHHHH-CC--ceEEEEecC
Confidence 44457889999999999987 47 888887643
No 103
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=33.61 E-value=52 Score=23.30 Aligned_cols=38 Identities=26% Similarity=0.405 Sum_probs=32.2
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCc
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGK 67 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK 67 (169)
..+.+.|++.+|=.++|+.|+...|+++...+.+ +.|+
T Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~-~~g~ 48 (152)
T 3b08_A 11 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAGK 48 (152)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE-ETTE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEE-ECCe
Confidence 4678999999999999999999999999877765 3453
No 104
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=33.55 E-value=50 Score=22.45 Aligned_cols=38 Identities=21% Similarity=0.276 Sum_probs=32.8
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCc
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGK 67 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK 67 (169)
.+++|.|.+..|=.+||+.|+...|+++...+. ++.|+
T Consensus 32 ~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrL-if~Gk 69 (97)
T 1wyw_B 32 SEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRF-LFEGQ 69 (97)
T ss_dssp CEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEE-EETTE
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCCChhhEEE-EECCe
Confidence 678999999999999999999999999987764 55664
No 105
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=33.53 E-value=1e+02 Score=20.33 Aligned_cols=33 Identities=18% Similarity=0.261 Sum_probs=24.9
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeee
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLN 63 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~ 63 (169)
..++-.++..+|..+|+++|.. || +|..|....
T Consensus 17 ~l~V~nLp~~~t~~~l~~~F~~-~G-~i~~v~i~~ 49 (111)
T 1x4h_A 17 TVFIRNLSFDSEEEALGEVLQQ-FG-DLKYVRVVL 49 (111)
T ss_dssp CEEEESCCTTCCHHHHHHHHHT-TS-CEEEEECCB
T ss_pred EEEEECCCCCCCHHHHHHHHHh-cC-CeEEEEEEe
Confidence 4456668889999999999987 55 466776653
No 106
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=33.47 E-value=87 Score=21.01 Aligned_cols=33 Identities=18% Similarity=0.278 Sum_probs=25.9
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeee
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLN 63 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~ 63 (169)
+-|+=.++.++|..||++.++. || +|.+|+...
T Consensus 21 ~lfV~nLp~~~te~~L~~~F~~-~G-~I~~v~i~~ 53 (99)
T 4fxv_A 21 NLIVNYLPQNMTQDELRSLFSS-IG-EVESAKLIR 53 (99)
T ss_dssp EEEEESCCTTCCHHHHHHHHHT-TS-CEEEEEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHh-cC-CEEEeEeee
Confidence 4456668999999999999987 56 577777764
No 107
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=33.33 E-value=47 Score=22.10 Aligned_cols=38 Identities=16% Similarity=0.289 Sum_probs=31.7
Q ss_pred CeEEEEeCCC-----CCHHHHHHHHHHHhCCceeEEEeeecCCc
Q 030915 29 TEIALKTIPS-----ASKIEIKRVLESLYGFEVDKVRTLNMEGK 67 (169)
Q Consensus 29 n~~~F~V~~~-----atK~eIK~alekiY~VkV~kVnT~~~~GK 67 (169)
..+.+.|++. +|=.++|+.|+...|+++...+.+ +.|+
T Consensus 17 ~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~-~~Gk 59 (92)
T 1wxv_A 17 EKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLI-FKGK 59 (92)
T ss_dssp SEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEE-ETTE
T ss_pred EEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEE-ECCe
Confidence 5678899995 999999999999999999887764 5554
No 108
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=33.30 E-value=74 Score=22.32 Aligned_cols=33 Identities=9% Similarity=-0.053 Sum_probs=25.3
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEee
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTL 62 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~ 62 (169)
..++-..+.++|..||++.++. ||.+|..|...
T Consensus 30 ~l~VgnLp~~~te~dL~~~F~~-~G~~v~~v~i~ 62 (111)
T 2jvr_A 30 RITMKNLPEGCSWQDLKDLARE-NSLETTFSSVN 62 (111)
T ss_dssp EEEEECSSCCCCHHHHHHHHHH-HTCCCSEEECS
T ss_pred EEEEECCCCCCCHHHHHHHHHH-hCCeeEEEEEE
Confidence 3455567889999999999987 57677777663
No 109
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.99 E-value=1.1e+02 Score=19.98 Aligned_cols=48 Identities=25% Similarity=0.279 Sum_probs=33.1
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecC-CcccccCCcccCCCCceEEEEEcCC
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNME-GKKKKRGGLLIAKPDYKKAYVTLKN 90 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~-GK~kR~~~~~gk~~~~KKAyVtL~~ 90 (169)
..++-.++..+|..||+++++. || +|..|....-. |+ ..--|||++..
T Consensus 19 ~l~v~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~g~------------~~g~afV~f~~ 67 (100)
T 2do4_A 19 KLFISGLPFSCTKEELEEICKA-HG-TVKDLRLVTNRAGK------------PKGLAYVEYEN 67 (100)
T ss_dssp CEEEESCCTTCCHHHHHHHHTT-TS-CEEEEEEEECTTSC------------EEEEEEEEESS
T ss_pred EEEEeCCCCCCCHHHHHHHHHh-CC-CeEEEEEEECCCCC------------EEeEEEEEECC
Confidence 4455568899999999999987 55 57777776433 22 11368888764
No 110
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=31.69 E-value=1.1e+02 Score=19.96 Aligned_cols=31 Identities=3% Similarity=0.081 Sum_probs=22.4
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEe
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRT 61 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT 61 (169)
+.-.|.-...+|..+|+++++. || +|..|..
T Consensus 15 ~~~l~V~n~~~t~~~l~~~F~~-~G-~i~~v~i 45 (97)
T 1x5p_A 15 GNTLYVYGEDMTPTLLRGAFSP-FG-NIIDLSM 45 (97)
T ss_dssp CSEEEEECSSCCHHHHHHHHTT-TS-CEEEEEE
T ss_pred CCEEEEcCCCCCHHHHHHHHhh-CC-CEEEEEe
Confidence 4445555678999999999977 55 5667665
No 111
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=37.82 E-value=9.9 Score=24.27 Aligned_cols=37 Identities=19% Similarity=0.382 Sum_probs=30.7
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCC
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEG 66 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~G 66 (169)
.++.+.|++..|=.++|+.|+...|+++...+.. +.|
T Consensus 11 ~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~-~~g 47 (76)
T 3b1l_X 11 YGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVI-FAG 47 (76)
Confidence 4577889999999999999999999998777653 445
No 112
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=31.29 E-value=68 Score=22.68 Aligned_cols=38 Identities=26% Similarity=0.405 Sum_probs=32.7
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCc
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGK 67 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK 67 (169)
..+.+.|++..|=.++|+.|+...|+++...+.. +.|+
T Consensus 87 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~-~~g~ 124 (152)
T 3b08_A 87 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAGK 124 (152)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE-ETTE
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEE-ECCE
Confidence 5789999999999999999999999999887765 4553
No 113
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=31.24 E-value=1.1e+02 Score=22.00 Aligned_cols=26 Identities=27% Similarity=0.210 Sum_probs=21.4
Q ss_pred eCCCCCHHHHHHHHHHHhCCceeEEEee
Q 030915 35 TIPSASKIEIKRVLESLYGFEVDKVRTL 62 (169)
Q Consensus 35 V~~~atK~eIK~alekiY~VkV~kVnT~ 62 (169)
.+..+|..+|++++++ || +|.+|...
T Consensus 35 L~~~~te~~L~~~F~~-fG-~v~~v~i~ 60 (114)
T 2cq2_A 35 LGNGVSRNQLLPVLEK-CG-LVDALLMP 60 (114)
T ss_dssp GGGTCCHHHHHHHHHH-HS-CEEEEECC
T ss_pred CCCCCCHHHHHHHHHh-cC-CeEEEEEe
Confidence 5678999999999987 78 78887653
No 114
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.13 E-value=1e+02 Score=19.65 Aligned_cols=30 Identities=23% Similarity=0.346 Sum_probs=22.8
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCceeEEEee
Q 030915 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTL 62 (169)
Q Consensus 31 ~~F~V~~~atK~eIK~alekiY~VkV~kVnT~ 62 (169)
|+-.++..+|..+|+++++. || +|..|...
T Consensus 12 ~V~nlp~~~t~~~l~~~F~~-~G-~i~~v~~~ 41 (90)
T 2dnq_A 12 FIGNLPREATEQEIRSLFEQ-YG-KVLECDII 41 (90)
T ss_dssp EEESCCSSCCHHHHHHHHHT-SS-CEEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHh-CC-CEEEEEEE
Confidence 44457889999999999987 45 56677665
No 115
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=30.02 E-value=39 Score=24.66 Aligned_cols=34 Identities=18% Similarity=0.312 Sum_probs=25.5
Q ss_pred CeEEEEeC----CCCCHHHHHHHHHHHhCCceeEEEee
Q 030915 29 TEIALKTI----PSASKIEIKRVLESLYGFEVDKVRTL 62 (169)
Q Consensus 29 n~~~F~V~----~~atK~eIK~alekiY~VkV~kVnT~ 62 (169)
.+++|.|. +..+|.||++.|.++|+++..-|-..
T Consensus 25 ke~~~~v~Hpg~~tpsk~eirekLA~~~~~~~d~Vvv~ 62 (107)
T 2v94_A 25 KEIYFEIYHPGEPTPSRKDVKGKLVAMLDLNPETTVIQ 62 (107)
T ss_dssp EEEEEEEECTTSCCCCHHHHHHHHHHHHTCCGGGEEEE
T ss_pred EEEEEEEEeCCCCCCCHHHHHHHHHHHHCCCCCEEEEE
Confidence 66777543 35689999999999999976655443
No 116
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=29.99 E-value=31 Score=25.04 Aligned_cols=33 Identities=15% Similarity=0.146 Sum_probs=24.1
Q ss_pred CeEEEEeC---CCCCHHHHHHHHHHHhCCceeEEEe
Q 030915 29 TEIALKTI---PSASKIEIKRVLESLYGFEVDKVRT 61 (169)
Q Consensus 29 n~~~F~V~---~~atK~eIK~alekiY~VkV~kVnT 61 (169)
.+++|.|. +..+|.||++.|.++|+++..-|-.
T Consensus 17 ke~~~~v~H~~~tpsk~eirekLAk~~~~~~d~Vvv 52 (102)
T 1ywx_A 17 REIKFTVSFDAATPSIKDVKMKLVAVLNANKQVLVV 52 (102)
T ss_dssp EEEEEEEECSSCCCCHHHHHHHHHHHHTSCSTTEEE
T ss_pred EEEEEEEEcCCCCCCHHHHHHHHHHHHCCCCCEEEE
Confidence 55666442 3569999999999999998754443
No 117
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=29.97 E-value=80 Score=20.19 Aligned_cols=38 Identities=18% Similarity=0.304 Sum_probs=31.3
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHH---hCCceeEEEeeecCCc
Q 030915 29 TEIALKTIPSASKIEIKRVLESL---YGFEVDKVRTLNMEGK 67 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~aleki---Y~VkV~kVnT~~~~GK 67 (169)
..+.+.|++..|=.++|+.|+.. -|+++...+.+ +.|+
T Consensus 16 ~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi-~~Gk 56 (85)
T 2wyq_A 16 QTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLI-YAGK 56 (85)
T ss_dssp CEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEE-ETTE
T ss_pred CEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEE-ECCE
Confidence 56789999999999999999998 57888877764 4554
No 118
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=29.20 E-value=93 Score=21.49 Aligned_cols=32 Identities=16% Similarity=0.248 Sum_probs=24.6
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeec
Q 030915 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNM 64 (169)
Q Consensus 31 ~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~ 64 (169)
++-.+++.+|..||++.++. || +|.+|..+..
T Consensus 6 ~v~nlp~~~~~~~l~~~f~~-~G-~i~~v~~~~~ 37 (167)
T 1fxl_A 6 IVNYLPQNMTQEEFRSLFGS-IG-EIESCKLVRD 37 (167)
T ss_dssp EEESCCTTCCHHHHHHHHHT-TS-CEEEEEEEEC
T ss_pred EEcCCCCCCCHHHHHHHHHh-cC-CeEEEEEEeC
Confidence 44457889999999999987 56 5777877653
No 119
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.86 E-value=60 Score=21.28 Aligned_cols=32 Identities=3% Similarity=0.087 Sum_probs=23.9
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEee
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTL 62 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~ 62 (169)
..++-.++..+|..+|+++|+. || +|..|...
T Consensus 14 ~l~V~nLp~~~t~~~l~~~f~~-~G-~i~~v~i~ 45 (102)
T 2cqb_A 14 VLYVGGLAEEVDDKVLHAAFIP-FG-DITDIQIP 45 (102)
T ss_dssp CEEEESCCSSCCHHHHHHHHTT-TS-CCCCEECC
T ss_pred EEEEeCCCCCCCHHHHHHHhhc-cC-CEEEEEEE
Confidence 3455568889999999999988 54 56666654
No 120
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=28.84 E-value=1.1e+02 Score=19.02 Aligned_cols=31 Identities=0% Similarity=-0.048 Sum_probs=23.5
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCceeEEEeee
Q 030915 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLN 63 (169)
Q Consensus 31 ~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~ 63 (169)
++-.++..+|..+|++.++. || +|.+|....
T Consensus 5 ~V~nlp~~~t~~~l~~~f~~-~G-~i~~~~i~~ 35 (83)
T 3md1_A 5 FVGDLNVNVDDETLRNAFKD-FP-SYLSGHVMW 35 (83)
T ss_dssp EEECCCTTCCHHHHHHHHTT-ST-TEEEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHh-cC-CeeEEEEEE
Confidence 44557889999999999976 55 677777653
No 121
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=28.83 E-value=31 Score=24.91 Aligned_cols=33 Identities=9% Similarity=0.226 Sum_probs=24.2
Q ss_pred CeEEEEeC---CCCCHHHHHHHHHHHhCCceeEEEe
Q 030915 29 TEIALKTI---PSASKIEIKRVLESLYGFEVDKVRT 61 (169)
Q Consensus 29 n~~~F~V~---~~atK~eIK~alekiY~VkV~kVnT 61 (169)
.+++|.|. +..+|.||++.|.++|+++..-|=.
T Consensus 17 ke~~~~v~H~~~tpsk~eirekLAk~~~~~~~~Vvv 52 (101)
T 1xn9_A 17 RELDFIVKYEGSTPSRNDVRNKLAAMLNAPLELLVI 52 (101)
T ss_dssp EEEEEEEECSSSCCCHHHHHHHHHHHTTCCTTTEEE
T ss_pred EEEEEEEEcCCCCCCHHHHHHHHHHHHCCCCCEEEE
Confidence 55566443 4569999999999999998654443
No 122
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.53 E-value=1.1e+02 Score=19.92 Aligned_cols=48 Identities=6% Similarity=0.206 Sum_probs=33.7
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCcccccCCcccCCCCceEEEEEcCC
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLKN 90 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK~kR~~~~~gk~~~~KKAyVtL~~ 90 (169)
..|+-.++..+|..+|+++++. || +|..|....-.|+ ..--|||++..
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~g~------------~~g~afV~f~~ 64 (103)
T 2d9p_A 17 NLYVKNLDDGIDDERLRKAFSP-FG-TITSAKVMMEGGR------------SKGFGFVCFSS 64 (103)
T ss_dssp CEEEECCCTTCCHHHHHHTTTT-TS-CEEEEEEEECSSS------------EEEEEEEEESS
T ss_pred EEEEeCCCCCCCHHHHHHHHHh-cC-CEEEEEEEcCCCC------------cCEEEEEEECC
Confidence 5566678899999999999986 55 4777777644332 11368888763
No 123
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=28.43 E-value=72 Score=23.63 Aligned_cols=38 Identities=26% Similarity=0.405 Sum_probs=32.9
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCc
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGK 67 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK 67 (169)
.++.+.|++..|=.++|+.|+...|+++...+.+ +.|+
T Consensus 31 ~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~-~~g~ 68 (172)
T 3u30_A 31 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAGK 68 (172)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE-ETTE
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEE-ECCc
Confidence 5688999999999999999999999999887665 5564
No 124
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=28.03 E-value=37 Score=24.39 Aligned_cols=33 Identities=24% Similarity=0.263 Sum_probs=24.7
Q ss_pred CeEEEEeC----CCCCHHHHHHHHHHHhCCceeEEEe
Q 030915 29 TEIALKTI----PSASKIEIKRVLESLYGFEVDKVRT 61 (169)
Q Consensus 29 n~~~F~V~----~~atK~eIK~alekiY~VkV~kVnT 61 (169)
.+++|.|. +..+|.||++.|.++|+++..-|=.
T Consensus 17 ke~~~~v~hp~~~tpsk~eirekLA~~~~~~~~~vvv 53 (98)
T 2g1d_A 17 KEIKYVLKFDSSRTPSREEIKELIAKHEGVDKELVIV 53 (98)
T ss_dssp EEEEEEEECCTTSCCCHHHHHHHHHHHHHSCSTTEEC
T ss_pred EEEEEEEEeCCCCCCCHHHHHHHHHHHHCCCCCEEEE
Confidence 56777543 3569999999999999997654433
No 125
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.00 E-value=79 Score=21.68 Aligned_cols=42 Identities=21% Similarity=0.331 Sum_probs=29.3
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCcccccCCcccCCCCceEEEEEcCC
Q 030915 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLKN 90 (169)
Q Consensus 31 ~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK~kR~~~~~gk~~~~KKAyVtL~~ 90 (169)
|+-.++.++|..||++.++. || +|.+|..+. ++ --|||++..
T Consensus 19 ~V~nLp~~~te~~L~~~F~~-fG-~v~~v~i~~--~k--------------g~aFVef~~ 60 (101)
T 2cq1_A 19 HIRKLPGEVTETEVIALGLP-FG-KVTNILMLK--GK--------------NQAFLELAT 60 (101)
T ss_dssp EEESCCTTCCHHHHHHTTTT-TS-CEEEEEEET--TT--------------TEEEEEESS
T ss_pred EEeCCCCCCCHHHHHHHHHh-cC-CEEEEEEEC--CC--------------CEEEEEECC
Confidence 44457889999999998876 66 466775542 21 268888764
No 126
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=27.83 E-value=1.6e+02 Score=20.72 Aligned_cols=33 Identities=27% Similarity=0.326 Sum_probs=23.5
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhC---CceeEEEe
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYG---FEVDKVRT 61 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~---VkV~kVnT 61 (169)
..++-.++..+|..||+++|+.++. +.+..+.+
T Consensus 15 ~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~ 50 (175)
T 1fje_B 15 NLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRT 50 (175)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCC
Confidence 3455568899999999999998764 34444443
No 127
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=27.66 E-value=1e+02 Score=20.55 Aligned_cols=29 Identities=14% Similarity=0.279 Sum_probs=21.5
Q ss_pred EEEEeCCC-CCHHHHHHHHHHHhCCceeEEEe
Q 030915 31 IALKTIPS-ASKIEIKRVLESLYGFEVDKVRT 61 (169)
Q Consensus 31 ~~F~V~~~-atK~eIK~alekiY~VkV~kVnT 61 (169)
|+-.++.. +|..||+++|+. || +|..|..
T Consensus 31 ~V~nl~~~~~t~~~l~~~F~~-~G-~v~~v~i 60 (110)
T 1wf1_A 31 FIGNLNTALVKKSDVETIFSK-YG-RVAGCSV 60 (110)
T ss_dssp EECSCCCSSCCHHHHHHHHGG-GS-CCSEEEE
T ss_pred EEeCCCcccCCHHHHHHHHHh-CC-CeEEEEE
Confidence 34447788 999999999987 55 4666655
No 128
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=27.32 E-value=1.5e+02 Score=20.30 Aligned_cols=32 Identities=6% Similarity=0.040 Sum_probs=25.3
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeec
Q 030915 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNM 64 (169)
Q Consensus 31 ~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~ 64 (169)
++-.++.++|..||++.++. || +|.+|.....
T Consensus 4 ~V~nlp~~~t~~~l~~~f~~-~G-~i~~v~i~~~ 35 (166)
T 3md3_A 4 YVGNLDKAITEDILKQYFQV-GG-PIANIKIMID 35 (166)
T ss_dssp EEEEEETTCCHHHHHHHHGG-GS-CEEEEEEECC
T ss_pred EECCCCCcCCHHHHHHHHHh-cC-CeEEEEEEEC
Confidence 45568899999999999986 66 6888887643
No 129
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.11 E-value=53 Score=23.20 Aligned_cols=38 Identities=18% Similarity=0.172 Sum_probs=32.2
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCC
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEG 66 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~G 66 (169)
.++++.|++..|=.++|+.|+...||++..-+.+.+++
T Consensus 19 k~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~ 56 (100)
T 2dzm_A 19 RNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKT 56 (100)
T ss_dssp CEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSS
T ss_pred eEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCC
Confidence 56889999999999999999999999998766654443
No 130
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=27.10 E-value=61 Score=21.97 Aligned_cols=44 Identities=5% Similarity=-0.031 Sum_probs=34.0
Q ss_pred CCCCcccCCeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeec
Q 030915 21 MPNTFQNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNM 64 (169)
Q Consensus 21 ~tEK~~~~n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~ 64 (169)
+|-+......+.-++++.+|=.++|+-|+...|+++..-+..-.
T Consensus 7 iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~ 50 (86)
T 4b6w_A 7 LTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLI 50 (86)
T ss_dssp EEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEE
T ss_pred EEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEe
Confidence 34333334455678999999999999999999999988887643
No 131
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=26.25 E-value=90 Score=22.17 Aligned_cols=32 Identities=25% Similarity=0.245 Sum_probs=25.3
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEee
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTL 62 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~ 62 (169)
..++-.++..+|..||++.|+. || +|..|...
T Consensus 49 ~l~V~nLp~~~te~~L~~~F~~-~G-~i~~v~i~ 80 (135)
T 2lea_A 49 SLKVDNLTYRTSPDTLRRVFEK-YG-RVGDVYIP 80 (135)
T ss_dssp CEEEECCCSSCHHHHHHHHHGG-GS-CCSEEECC
T ss_pred EEEEeCCCCCCCHHHHHHHHHh-cC-CEEEEEEE
Confidence 4566678999999999999987 56 56777665
No 132
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=26.07 E-value=41 Score=25.69 Aligned_cols=33 Identities=24% Similarity=0.390 Sum_probs=24.9
Q ss_pred CeEEEEeC----CCCCHHHHHHHHHHHhCCceeEEEe
Q 030915 29 TEIALKTI----PSASKIEIKRVLESLYGFEVDKVRT 61 (169)
Q Consensus 29 n~~~F~V~----~~atK~eIK~alekiY~VkV~kVnT 61 (169)
.+++|.|. +..+|.||++.|.++|+++..-|=.
T Consensus 21 ke~v~dV~HpG~aTpsr~eIrekLAk~y~~~~d~VvV 57 (135)
T 3u5c_Y 21 KQFVVDVLHPNRANVSKDELREKLAEVYKAEKDAVSV 57 (135)
T ss_dssp EEEEEEEECSSSCCCCHHHHHHHHHTTTTSCGGGEEE
T ss_pred EEEEEEEEeCCCCCCCHHHHHHHHHHHHCCCCCEEEE
Confidence 56777653 4568999999999999987654444
No 133
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=26.06 E-value=1.5e+02 Score=20.55 Aligned_cols=32 Identities=13% Similarity=0.195 Sum_probs=24.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeee
Q 030915 30 EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLN 63 (169)
Q Consensus 30 ~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~ 63 (169)
.++-.+++++|..||++.++. || +|.+|..+.
T Consensus 6 l~v~nlp~~~~~~~l~~~f~~-~G-~i~~v~i~~ 37 (168)
T 1b7f_A 6 LIVNYLPQDMTDRELYALFRA-IG-PINTCRIMR 37 (168)
T ss_dssp EEEECCCTTCCHHHHHHHHHT-TS-CEEEEECCE
T ss_pred EEEeCCCCCCCHHHHHHHHHh-cC-CeeEEEEEE
Confidence 345568899999999999987 55 477777764
No 134
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=25.71 E-value=85 Score=22.25 Aligned_cols=39 Identities=21% Similarity=0.244 Sum_probs=33.9
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCc
Q 030915 28 ITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGK 67 (169)
Q Consensus 28 ~n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK 67 (169)
-.++++.|+|..|=.++|+.|+.-.|+++...+. +..|+
T Consensus 31 Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrL-if~Gk 69 (93)
T 3plu_A 31 GKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVL-QKGGS 69 (93)
T ss_dssp SCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEE-EETTE
T ss_pred CCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEE-EeCCE
Confidence 3779999999999999999999999999998876 44554
No 135
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=25.68 E-value=1.2e+02 Score=18.51 Aligned_cols=31 Identities=16% Similarity=0.237 Sum_probs=22.9
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCceeEEEeee
Q 030915 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLN 63 (169)
Q Consensus 31 ~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~ 63 (169)
++-.++..+|..+|++.+.. || +|..|....
T Consensus 3 ~v~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~ 33 (75)
T 2mss_A 3 FVGGLSVNTTVEDVKHYFEQ-FG-KVDDAMLMF 33 (75)
T ss_dssp EEECCCSSCCHHHHHHHHHT-TS-CCSEECCCB
T ss_pred EEecCCCCCCHHHHHHHHHh-cC-CEEEEEEEe
Confidence 44457889999999999988 55 366776553
No 136
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=25.44 E-value=1.1e+02 Score=19.96 Aligned_cols=33 Identities=18% Similarity=0.204 Sum_probs=26.2
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeee
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLN 63 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~ 63 (169)
+-|+-..+.++|..+|++++++ || +|.+|+...
T Consensus 13 ~l~V~~Lp~~~te~~L~~~F~~-~G-~i~~v~i~~ 45 (89)
T 3d2w_A 13 KVFVGRCTEDMTAEELQQFFCQ-YG-EVVDVFIPK 45 (89)
T ss_dssp EEEEESCCTTCCHHHHHHHHTT-TS-CEEEEECCS
T ss_pred EEEEeCCCCCCCHHHHHHHHhc-cC-CEEEEEEee
Confidence 4567778999999999999987 66 477777654
No 137
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=25.30 E-value=90 Score=23.79 Aligned_cols=36 Identities=19% Similarity=0.363 Sum_probs=30.4
Q ss_pred CCeEEEEe----CCCCCHHHHHHHHHHHhCCceeEEEeeecC
Q 030915 28 ITEIALKT----IPSASKIEIKRVLESLYGFEVDKVRTLNME 65 (169)
Q Consensus 28 ~n~~~F~V----~~~atK~eIK~alekiY~VkV~kVnT~~~~ 65 (169)
.+.|+... ++..+-.+|++|+.. || +|.+|+...-+
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~-fG-eV~~~~li~Dp 42 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKK-YG-EISHFEAFNDP 42 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHT-TS-CCSEEEEEECT
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHh-cC-CeEEEEEEecC
Confidence 35577778 999999999999995 99 99999998654
No 138
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=25.29 E-value=1.7e+02 Score=20.03 Aligned_cols=31 Identities=3% Similarity=0.089 Sum_probs=23.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHhCCceeEEEee
Q 030915 30 EIALKTIPSASKIEIKRVLESLYGFEVDKVRTL 62 (169)
Q Consensus 30 ~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~ 62 (169)
.++-.++..+|..+|++.|+. || +|..|...
T Consensus 66 l~v~nlp~~~~~~~l~~~f~~-~G-~i~~v~i~ 96 (140)
T 2ku7_A 66 LYVGGLAEEVDDKVLHAAFIP-FG-DITDIQIP 96 (140)
T ss_dssp EEEECCCTTCCHHHHHHHHGG-GS-CEEEEECC
T ss_pred EEEEeCCCCCCHHHHHHHHHh-cC-CEEEEEEe
Confidence 345568889999999999987 55 46677654
No 139
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=25.25 E-value=91 Score=19.02 Aligned_cols=27 Identities=19% Similarity=0.416 Sum_probs=20.8
Q ss_pred EeCCCCCHHHHHHHHHHHhCCceeEEEee
Q 030915 34 KTIPSASKIEIKRVLESLYGFEVDKVRTL 62 (169)
Q Consensus 34 ~V~~~atK~eIK~alekiY~VkV~kVnT~ 62 (169)
.++..+|..+|+++++. || +|..|...
T Consensus 6 nLp~~~t~~~l~~~F~~-~G-~i~~v~i~ 32 (75)
T 1iqt_A 6 GLSPDTPEEKIREYFGG-FG-EVESIELP 32 (75)
T ss_dssp CCCSSCCHHHHHHHHHH-HS-CCSEECCC
T ss_pred CCCCCCCHHHHHHHHHh-cC-CeEEEEEE
Confidence 46788999999999988 55 36666554
No 140
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=25.12 E-value=80 Score=21.49 Aligned_cols=30 Identities=13% Similarity=0.309 Sum_probs=22.2
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCceeEEEee
Q 030915 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTL 62 (169)
Q Consensus 31 ~~F~V~~~atK~eIK~alekiY~VkV~kVnT~ 62 (169)
++-.++..+|..||+++++. || +|..|...
T Consensus 35 ~V~nLp~~~t~~~L~~~F~~-~G-~i~~v~i~ 64 (108)
T 2jvo_A 35 FVRPFPLDVQESELNEIFGP-FG-PMKEVKIL 64 (108)
T ss_dssp EECSSCTTCCHHHHHHHHTT-TS-CCCEEEEE
T ss_pred EEECCCCCCCHHHHHHHHHh-cC-CEEEEEEE
Confidence 34447889999999999987 55 46666655
No 141
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=24.93 E-value=19 Score=25.07 Aligned_cols=39 Identities=18% Similarity=0.329 Sum_probs=31.9
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCc
Q 030915 28 ITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGK 67 (169)
Q Consensus 28 ~n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK 67 (169)
...+.+.|++..|=.++|+.|+..+|+++...+. ++.|+
T Consensus 37 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL-i~~Gk 75 (101)
T 3m63_B 37 QDKWEVNVAPESTVLQFKEAINKANGIPVANQRL-IYSGK 75 (101)
T ss_dssp SCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCE-EETTE
T ss_pred CEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEE-EECCE
Confidence 3556788999999999999999999999987754 45564
No 142
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=24.64 E-value=47 Score=23.00 Aligned_cols=38 Identities=21% Similarity=0.347 Sum_probs=32.1
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCc
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGK 67 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK 67 (169)
..+.+.|++..|=.++|+.|+...|+++...+.+ +.|+
T Consensus 34 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~Gk 71 (106)
T 1ttn_A 34 KDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWF-FSGR 71 (106)
T ss_dssp EEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEE-ETTE
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEE-ECCE
Confidence 5678999999999999999999999998877654 4554
No 143
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=24.43 E-value=98 Score=22.32 Aligned_cols=50 Identities=18% Similarity=0.095 Sum_probs=32.3
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeec-CCcccccCCcccCCCCceEEEEEcCCCCc
Q 030915 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNM-EGKKKKRGGLLIAKPDYKKAYVTLKNPLS 93 (169)
Q Consensus 31 ~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~-~GK~kR~~~~~gk~~~~KKAyVtL~~g~~ 93 (169)
++-.++.++|..||+++++.+ +|....|+...- .|+ .. =-|||++.....
T Consensus 46 fVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~Gr----------sr--GfaFV~F~~~e~ 96 (126)
T 2hgm_A 46 RLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGK----------IT--GEAFVQFASQEL 96 (126)
T ss_dssp EEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSS----------SC--SEEEEEESSTTH
T ss_pred EEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCC----------Cc--eEEEEEECCHHH
Confidence 444578899999999999986 543226766532 232 11 258888875553
No 144
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=24.24 E-value=39 Score=23.13 Aligned_cols=39 Identities=21% Similarity=0.405 Sum_probs=31.6
Q ss_pred CCeEEEEeC--CCCCHHHHHHHH-HHHhCCceeEEEeeecCCc
Q 030915 28 ITEIALKTI--PSASKIEIKRVL-ESLYGFEVDKVRTLNMEGK 67 (169)
Q Consensus 28 ~n~~~F~V~--~~atK~eIK~al-ekiY~VkV~kVnT~~~~GK 67 (169)
..++++.|+ +..|=.++|+.| +...|+++...+.+ +.|+
T Consensus 11 g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi-~~Gk 52 (87)
T 2lxa_A 11 APKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLL-LKGK 52 (87)
T ss_dssp SSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEE-ETTE
T ss_pred CCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEE-ECCE
Confidence 345777655 999999999999 99999999888765 6775
No 145
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=24.17 E-value=66 Score=22.91 Aligned_cols=38 Identities=11% Similarity=0.090 Sum_probs=32.9
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCc
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGK 67 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK 67 (169)
.++++.|+++.|=.+||+.|+...|+++...+.. +.|+
T Consensus 39 k~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi-~~Gk 76 (100)
T 1uh6_A 39 KKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLK-KWYT 76 (100)
T ss_dssp SCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEE-ETTE
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEE-ECCE
Confidence 5688999999999999999999999999888775 4464
No 146
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=24.15 E-value=80 Score=23.94 Aligned_cols=38 Identities=24% Similarity=0.287 Sum_probs=32.7
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecCCc
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGK 67 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~GK 67 (169)
.++.+.|++..|=.++|+.|+...|+++...+. ++.|+
T Consensus 11 k~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL-i~~Gk 48 (169)
T 3l0w_B 11 KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRL-IFAGK 48 (169)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEE-EETTE
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEE-EECCc
Confidence 568899999999999999999999999988765 45554
No 147
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=24.13 E-value=1.2e+02 Score=20.76 Aligned_cols=33 Identities=21% Similarity=0.255 Sum_probs=25.7
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeee
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLN 63 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~ 63 (169)
+.++-..+.++|..+|++.+++ || +|.+|+.+.
T Consensus 8 ~lfV~nL~~~~te~~L~~~F~~-~G-~i~~v~i~~ 40 (110)
T 3s8s_A 8 EVTFARLNDNVRETFLKDMCRK-YG-EVEEVEILL 40 (110)
T ss_dssp EEEEESCCTTCCHHHHHHHHTT-TS-CEEEEEEEE
T ss_pred EEEEECCCCCCCHHHHHHHHHh-cC-CeeEEEEEE
Confidence 4466678889999999999977 55 577887764
No 148
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=24.12 E-value=44 Score=22.73 Aligned_cols=36 Identities=14% Similarity=0.067 Sum_probs=31.4
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeec
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNM 64 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~ 64 (169)
..+...+++.+|=.++|.-|+.+||+++...+..-.
T Consensus 23 ~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~ 58 (97)
T 1wjn_A 23 QILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYE 58 (97)
T ss_dssp CCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEE
Confidence 467788999999999999999999999988877644
No 149
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=24.06 E-value=51 Score=21.29 Aligned_cols=29 Identities=7% Similarity=0.096 Sum_probs=22.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHhCCceeEEEe
Q 030915 30 EIALKTIPSASKIEIKRVLESLYGFEVDKVRT 61 (169)
Q Consensus 30 ~~~F~V~~~atK~eIK~alekiY~VkV~kVnT 61 (169)
.++-.++..+|..||+++++.. +|..|..
T Consensus 8 l~V~nLp~~~t~~~l~~~F~~~---~v~~~~i 36 (88)
T 1wg1_A 8 ILVKNLPQDSNCQEVHDLLKDY---DLKYCYV 36 (88)
T ss_dssp EEEESCCSSCCHHHHHHHTCSS---CCCCEEE
T ss_pred EEEeCCCCCCCHHHHHHHHhhC---CeEEEEE
Confidence 3455578889999999999886 5667765
No 150
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=24.00 E-value=1.8e+02 Score=20.15 Aligned_cols=33 Identities=9% Similarity=0.127 Sum_probs=26.1
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeee
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLN 63 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~ 63 (169)
..++-.++..+|..||++.++. || +|..|....
T Consensus 89 ~l~V~nlp~~~t~~~l~~~F~~-~G-~i~~~~i~~ 121 (167)
T 2cjk_A 89 KIFVGGIGPDVRPKEFEEFFSQ-WG-TIIDAQLML 121 (167)
T ss_dssp EEEEEEECTTCCHHHHHHHHHT-TS-CCSEEECCC
T ss_pred eEEECCCCCCCCHHHHHHHHHh-Cc-cEEEEEEEE
Confidence 4567778999999999999987 56 577777654
No 151
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=23.76 E-value=1.5e+02 Score=19.08 Aligned_cols=30 Identities=10% Similarity=0.027 Sum_probs=22.6
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCceeEEEeee
Q 030915 32 ALKTIPSASKIEIKRVLESLYGFEVDKVRTLN 63 (169)
Q Consensus 32 ~F~V~~~atK~eIK~alekiY~VkV~kVnT~~ 63 (169)
+-.++..+|..||++++.. || +|.+|....
T Consensus 7 V~nLp~~~t~~~l~~~F~~-~G-~i~~v~i~~ 36 (96)
T 2x1f_A 7 LGSIPYDQTEEQILDLCSN-VG-PVINLKMMF 36 (96)
T ss_dssp EESCCTTCCHHHHHHHHHT-TS-CEEEEECCB
T ss_pred EECCCCCCCHHHHHHHHHh-cC-CEEEEEEEe
Confidence 3346788999999999987 55 577777653
No 152
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=23.63 E-value=1.6e+02 Score=20.51 Aligned_cols=32 Identities=3% Similarity=0.037 Sum_probs=22.8
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEee
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTL 62 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~ 62 (169)
+.-.|.-..++|..+|+++++. || +|..|...
T Consensus 39 ~~~lfVgnl~~te~~L~~~F~~-~G-~I~~v~i~ 70 (121)
T 2bz2_A 39 GNTLYVYGEDMTPTLLRGAFSP-FG-NIIDLSMD 70 (121)
T ss_dssp CCEEEEECSSCCHHHHHHHHST-TC-CCSCEEEE
T ss_pred CCEEEEcCCCCCHHHHHHHHHc-cC-CEEEEEEe
Confidence 4456666678999999999976 55 45666653
No 153
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.40 E-value=75 Score=20.48 Aligned_cols=30 Identities=20% Similarity=0.336 Sum_probs=23.0
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCceeEEEee
Q 030915 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTL 62 (169)
Q Consensus 31 ~~F~V~~~atK~eIK~alekiY~VkV~kVnT~ 62 (169)
++-.++..+|..+|+++++. || +|..|...
T Consensus 14 ~V~nLp~~~t~~~l~~~F~~-~G-~v~~v~~~ 43 (92)
T 2dgt_A 14 HVGNISPTCTNQELRAKFEE-YG-PVIECDIV 43 (92)
T ss_dssp EEESCCSSCCHHHHHHHHHT-TS-CCCEEEEC
T ss_pred EEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEE
Confidence 44457889999999999988 66 46677654
No 154
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.19 E-value=94 Score=21.59 Aligned_cols=31 Identities=23% Similarity=0.203 Sum_probs=23.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeee
Q 030915 30 EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLN 63 (169)
Q Consensus 30 ~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~ 63 (169)
.++-.++.++|..||+++++.+ .|..|+.+.
T Consensus 19 v~V~nLp~~~te~dl~~~F~~~---~v~~v~i~~ 49 (109)
T 2dnn_A 19 VSVHGMPFSAMENDVRDFFHGL---RVDAVHLLK 49 (109)
T ss_dssp EEEECCCSSCCHHHHHHHTTTS---CCCEEEECC
T ss_pred EEEeCCCCCCCHHHHHHHhccC---CeeEEEEEE
Confidence 3445578899999999999986 467777653
No 155
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=23.15 E-value=96 Score=20.76 Aligned_cols=38 Identities=21% Similarity=0.305 Sum_probs=31.4
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHh---CCceeEEEeeecCCc
Q 030915 29 TEIALKTIPSASKIEIKRVLESLY---GFEVDKVRTLNMEGK 67 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY---~VkV~kVnT~~~~GK 67 (169)
..+.+.|++..|=.++|+.|+..+ |+++...+.+ +.|+
T Consensus 11 ~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi-~~Gk 51 (95)
T 1uel_A 11 QTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLI-YAGK 51 (95)
T ss_dssp CEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEE-ETTE
T ss_pred CEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEE-ECCE
Confidence 467899999999999999999994 6888877764 5564
No 156
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=23.11 E-value=1.5e+02 Score=18.65 Aligned_cols=33 Identities=18% Similarity=0.108 Sum_probs=25.3
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeee
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLN 63 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~ 63 (169)
..++-.++..+|..+|++.++. || +|..|....
T Consensus 13 ~l~V~nlp~~~t~~~l~~~F~~-~G-~i~~v~i~~ 45 (87)
T 3s7r_A 13 KMFVGGLSWDTSKKDLKDYFTK-FG-EVVDCTIKM 45 (87)
T ss_dssp EEEEECCCTTCCHHHHHHHHTT-TS-CEEEEEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHh-CC-CEEEEEEee
Confidence 4456668999999999999976 55 677777654
No 157
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=22.93 E-value=1.3e+02 Score=21.01 Aligned_cols=32 Identities=19% Similarity=0.324 Sum_probs=25.2
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeec
Q 030915 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNM 64 (169)
Q Consensus 31 ~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~ 64 (169)
|+-.+++.+|..+|++.++. || +|.+|..+..
T Consensus 7 ~V~nLp~~~te~~l~~~F~~-~G-~i~~v~i~~~ 38 (175)
T 3nmr_A 7 FVGQVPRTWSEKDLRELFEQ-YG-AVYEINVLRD 38 (175)
T ss_dssp EEESCCTTCCHHHHHHHHHT-TS-CEEEEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHh-CC-CEEEEEEEec
Confidence 44457889999999999987 66 5888887743
No 158
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.67 E-value=1.6e+02 Score=20.17 Aligned_cols=24 Identities=33% Similarity=0.333 Sum_probs=19.3
Q ss_pred CCCCHHHHHHHHHHHhCCceeEEEee
Q 030915 37 PSASKIEIKRVLESLYGFEVDKVRTL 62 (169)
Q Consensus 37 ~~atK~eIK~alekiY~VkV~kVnT~ 62 (169)
..+|..+|++++++ || +|..|...
T Consensus 27 ~~~te~~L~~~F~~-~G-~V~~v~i~ 50 (100)
T 2d9o_A 27 GGYSKDVLLRLLQK-YG-EVLNLVLS 50 (100)
T ss_dssp CSCCHHHHHHHHHT-TS-CEEEEEEE
T ss_pred CCCCHHHHHHHHHh-cC-CEEEEEEc
Confidence 56899999999987 66 57777765
No 159
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=22.25 E-value=90 Score=21.75 Aligned_cols=36 Identities=22% Similarity=0.338 Sum_probs=29.1
Q ss_pred EEEEeCCCCCHHHHHHHH-HHHhCCceeEEEeeecCCc
Q 030915 31 IALKTIPSASKIEIKRVL-ESLYGFEVDKVRTLNMEGK 67 (169)
Q Consensus 31 ~~F~V~~~atK~eIK~al-ekiY~VkV~kVnT~~~~GK 67 (169)
+.+.|++..|=.++|+.| +...|+++...+. ++.|+
T Consensus 34 i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrL-i~~Gk 70 (98)
T 4a20_A 34 IEHDFSPSDTILQIKQHLISEEKASHISEIKL-LLKGK 70 (98)
T ss_dssp EEEEECTTCBHHHHHHHHHHTTSCSCGGGEEE-EETTE
T ss_pred EEEecCCCChHHHHHHHHHHHhcCCChhhEEE-EECCE
Confidence 334677999999999999 8888999988875 46664
No 160
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=22.25 E-value=87 Score=21.63 Aligned_cols=38 Identities=11% Similarity=0.032 Sum_probs=30.1
Q ss_pred CeEEEEeC--------C-CCCHHHHHHHHHHHh--CCceeE-EEeeecCCc
Q 030915 29 TEIALKTI--------P-SASKIEIKRVLESLY--GFEVDK-VRTLNMEGK 67 (169)
Q Consensus 29 n~~~F~V~--------~-~atK~eIK~alekiY--~VkV~k-VnT~~~~GK 67 (169)
..+.+.|+ + +.|=.++|+.|+... |+++.. .+. ++.|+
T Consensus 26 ~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrL-i~~Gk 75 (107)
T 1x1m_A 26 PKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDL-IYCGR 75 (107)
T ss_dssp CCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEE-EETTE
T ss_pred cEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEE-EECCe
Confidence 45777744 4 499999999999999 999988 665 46675
No 161
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=22.21 E-value=77 Score=21.08 Aligned_cols=37 Identities=22% Similarity=0.232 Sum_probs=30.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHh--CCceeEEEeeecCCc
Q 030915 30 EIALKTIPSASKIEIKRVLESLY--GFEVDKVRTLNMEGK 67 (169)
Q Consensus 30 ~~~F~V~~~atK~eIK~alekiY--~VkV~kVnT~~~~GK 67 (169)
.+.+.|++..|=.++|+.|+... ++++...+.+ +.|+
T Consensus 21 ~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi-~~Gk 59 (93)
T 1wgd_A 21 DLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLI-YSGK 59 (93)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEE-ETTE
T ss_pred EEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEE-ECCE
Confidence 57777889999999999999998 9998777654 5564
No 162
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=22.02 E-value=1.3e+02 Score=21.31 Aligned_cols=32 Identities=19% Similarity=0.212 Sum_probs=24.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeee
Q 030915 30 EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLN 63 (169)
Q Consensus 30 ~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~ 63 (169)
.|+-.++..+|..+|++++.. || +|.+|+...
T Consensus 76 l~V~nl~~~~t~~~l~~~F~~-~G-~i~~v~i~~ 107 (150)
T 2i2y_A 76 VYVGNLGNNGNKTELERAFGY-YG-PLRSVWVAR 107 (150)
T ss_dssp EEEESCCSCCSCHHHHHHHHH-HS-CEEEEEECS
T ss_pred EEEeCCCCCCCHHHHHHHHHh-hC-CEEEEEEee
Confidence 345557889999999999988 56 577777653
No 163
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=22.00 E-value=80 Score=21.31 Aligned_cols=30 Identities=7% Similarity=0.197 Sum_probs=22.5
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCceeEEEee
Q 030915 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTL 62 (169)
Q Consensus 31 ~~F~V~~~atK~eIK~alekiY~VkV~kVnT~ 62 (169)
|+-.++..+|..||++.|+. || +|..|...
T Consensus 44 ~V~nlp~~~t~~~l~~~F~~-~G-~i~~~~i~ 73 (118)
T 2khc_A 44 FIYHLPQEFTDTDLASTFLP-FG-NVISAKVF 73 (118)
T ss_dssp EEECSCTTCCHHHHHHHTTT-SC-EEEEEEEC
T ss_pred EEeCCCCCCCHHHHHHHHHh-cC-CEEEEEEE
Confidence 44457889999999999986 55 46666665
No 164
>2fki_A Protein YJBR; NESG, GFT-alpha-beta, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; NMR {Escherichia coli} SCOP: d.198.3.1
Probab=20.73 E-value=1.1e+02 Score=22.14 Aligned_cols=74 Identities=12% Similarity=0.149 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHHhCCceeEEE---eeecCCcccccCCcccCCCCceEEEEEcCCCCccCCCCCccccchHHHHHHHhhh
Q 030915 39 ASKIEIKRVLESLYGFEVDKVR---TLNMEGKKKKRGGLLIAKPDYKKAYVTLKNPLSLSEDLFPIRVIQDEKERMRKEK 115 (169)
Q Consensus 39 atK~eIK~alekiY~VkV~kVn---T~~~~GK~kR~~~~~gk~~~~KKAyVtL~~g~~i~PdlF~~k~~~~~~~~~~k~~ 115 (169)
||..+|.+|...++|+...--- +....- -.|.|..+....... .+.-+...++.+....+-
T Consensus 1 M~~~~l~~~~l~lpg~~e~~p~~~~~~vfkv--------------~gK~FA~~~~~~~~~--~v~lK~~pe~~~~L~~~~ 64 (126)
T 2fki_A 1 MTISELLQYCMAKPGAEQSVHNDWKATQIKV--------------EDVLFAMVKEVENRP--AVSLKTSPELAELLRQQH 64 (126)
T ss_dssp CCHHHHHHHHTTSTTCEEEEETTTTEEEEES--------------SSCEEEEECCBTTBC--EEEEESCHHHHHHHHHSC
T ss_pred CCHHHHHHHHHhCCCCEeEcCCCCceEEEEE--------------CCEEEEEEEecCCCc--EEEEeCCHHHHHHHHhhC
Confidence 6789999999999998864331 111110 136777665433222 455566555666555542
Q ss_pred hchhhh---cccccccc
Q 030915 116 ESSIVE---EGKKHWLD 129 (169)
Q Consensus 116 ~~~~~e---~~~~~~l~ 129 (169)
. .+.- -+++||+-
T Consensus 65 ~-~i~PayhmnK~hWis 80 (126)
T 2fki_A 65 S-DVRPSRHLNKAHWST 80 (126)
T ss_dssp S-TTCCCCSSCTTTEEE
T ss_pred C-CeecCCcCCCceeEE
Confidence 1 1322 13778863
No 165
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=20.34 E-value=1e+02 Score=20.69 Aligned_cols=34 Identities=18% Similarity=0.005 Sum_probs=30.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeee
Q 030915 30 EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLN 63 (169)
Q Consensus 30 ~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~ 63 (169)
.+.+.|++..|=.++|+-|+...|+++..-+..-
T Consensus 20 ~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~ 53 (95)
T 1v6e_A 20 RSEKRYSRSLTIAEFKCKLELVVGSPASCMELEL 53 (95)
T ss_dssp CEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEE
T ss_pred eEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEE
Confidence 5888999999999999999999999988777654
No 166
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=20.33 E-value=1.1e+02 Score=22.30 Aligned_cols=33 Identities=12% Similarity=-0.026 Sum_probs=25.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHhCCc--eeEEEeee
Q 030915 30 EIALKTIPSASKIEIKRVLESLYGFE--VDKVRTLN 63 (169)
Q Consensus 30 ~~~F~V~~~atK~eIK~alekiY~Vk--V~kVnT~~ 63 (169)
.++-.++.++|..||+++++. ||.- |..|+...
T Consensus 47 lfVgnLp~~~te~dL~~~F~~-~G~v~~v~~v~i~~ 81 (136)
T 2hgl_A 47 VKLRGLPWSCSVEDVQNFLSD-CTIHDGAAGVHFIY 81 (136)
T ss_dssp EEEESCCTTCCHHHHHHHTTT-CCCSSSSTTEEEEE
T ss_pred EEEeCCCCCCCHHHHHHHHHH-hCCcCceeEEEEEE
Confidence 345557889999999999988 6653 77787764
No 167
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.28 E-value=2e+02 Score=19.04 Aligned_cols=48 Identities=21% Similarity=0.152 Sum_probs=32.8
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeeecC-CcccccCCcccCCCCceEEEEEcCC
Q 030915 29 TEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNME-GKKKKRGGLLIAKPDYKKAYVTLKN 90 (169)
Q Consensus 29 n~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~~~-GK~kR~~~~~gk~~~~KKAyVtL~~ 90 (169)
..++-.++..+|..||+++|+. || +|..|...... |+ ..--|||++..
T Consensus 17 ~l~V~nlp~~~~~~~l~~~f~~-~G-~i~~~~i~~~~~g~------------~~g~afV~f~~ 65 (114)
T 2do0_A 17 TVFVANLDYKVGWKKLKEVFSM-AG-VVVRADILEDKDGK------------SRGIGTVTFEQ 65 (114)
T ss_dssp CEEEESCCTTCCHHHHHHHHTT-TS-CEEEEEEEECTTCS------------EEEEEEEEESS
T ss_pred EEEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEEECCCCC------------eeeEEEEEECC
Confidence 4456668889999999999986 55 67777765432 21 11368888774
No 168
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=20.06 E-value=1.7e+02 Score=21.88 Aligned_cols=32 Identities=9% Similarity=0.096 Sum_probs=25.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHhCCceeEEEeee
Q 030915 30 EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLN 63 (169)
Q Consensus 30 ~~~F~V~~~atK~eIK~alekiY~VkV~kVnT~~ 63 (169)
.|+=.++.++|..+|++++++ || +|.+|+.+.
T Consensus 18 lfVgnLp~~~te~~L~~~F~~-~G-~I~~v~i~~ 49 (213)
T 4f02_A 18 LYVGDLHPDVTEAMLYEKFSP-AG-PILSIRVCR 49 (213)
T ss_dssp EEEESCCTTCCHHHHHHHHGG-GS-CEEEEEEEE
T ss_pred EEEeCCCCCCCHHHHHHHHHh-hC-CEEEEEEec
Confidence 345568899999999999987 56 688888764
Done!