RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 030915
         (169 letters)



>d2qamt1 d.12.1.1 (T:1-93) Ribosomal protein L23 {Escherichia coli
          [TaxId: 562]}
          Length = 93

 Score = 61.7 bits (150), Expect = 7e-14
 Identities = 27/59 (45%), Positives = 38/59 (64%)

Query: 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLK 89
          I LK    A+K EIK  ++ L+  EV+ V TL ++GK K+ G  +  + D+KKAYVTLK
Sbjct: 30 IVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLK 88


>d2j01x1 d.12.1.1 (X:3-95) Ribosomal protein L23 {Thermus
          thermophilus [TaxId: 274]}
          Length = 93

 Score = 59.7 bits (145), Expect = 3e-13
 Identities = 24/59 (40%), Positives = 34/59 (57%)

Query: 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLK 89
                P A+K EIK  +E+ +  +V KV TL++ GKKK+ G  L  +PD KKA V + 
Sbjct: 24 YTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGKKKRLGRYLGKRPDRKKAIVQVA 82


>d2zjrq1 d.12.1.1 (Q:2-94) Ribosomal protein L23 {Deinococcus
          radiodurans [TaxId: 1299]}
          Length = 93

 Score = 57.4 bits (139), Expect = 3e-12
 Identities = 20/59 (33%), Positives = 32/59 (54%)

Query: 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLIAKPDYKKAYVTLK 89
           +    P A+K EIK  ++  +G  V  + T+N+ GK+K+ G  +  + D KKA V L 
Sbjct: 24 YSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGKRKRVGRFIGQRNDRKKAIVRLA 82


>d1vqos1 d.12.1.1 (S:1-81) Ribosomal protein L23 {Archaeon
          Haloarcula marismortui [TaxId: 2238]}
          Length = 81

 Score = 40.9 bits (96), Expect = 4e-06
 Identities = 18/73 (24%), Positives = 26/73 (35%), Gaps = 24/73 (32%)

Query: 28 ITEIALKTI-----------PSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLI 76
          +TE A+  +             ASK E+   +E  Y   V++V T N    +        
Sbjct: 10 VTEKAMNDMDFQNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGE-------- 61

Query: 77 AKPDYKKAYVTLK 89
               KKA V L 
Sbjct: 62 -----KKAVVRLS 69


>d2clyc1 f.45.1.1 (C:5-70) ATPase subunit F6 {Cow (Bos taurus)
          [TaxId: 9913]}
          Length = 66

 Score = 23.5 bits (51), Expect = 5.2
 Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 2/30 (6%)

Query: 56 VDKVRTLNMEGKKKKRGGLLIAKPDYKKAY 85
          VDK+R      K++  GG + A P+Y++  
Sbjct: 9  VDKIREYRT--KRQTSGGPVDAGPEYQQDL 36


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.133    0.373 

Gapped
Lambda     K      H
   0.267   0.0686    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 605,402
Number of extensions: 26965
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 7
Length of query: 169
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 90
Effective length of database: 1,322,926
Effective search space: 119063340
Effective search space used: 119063340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.1 bits)