BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030916
         (169 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1KKX|A Chain A, Solution Structure Of The Dna-Binding Domain Of Adr6
 pdb|1KN5|A Chain A, Solution Structure Of Arid Domain Of Adr6 From
          Saccharomyces Cerevisiae
          Length = 123

 Score = 27.7 bits (60), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 43 WNLVVQHPNFDNLTQLFSFYYKSLTPYE 70
          W++V Q     +  QL S Y++ L PYE
Sbjct: 72 WSMVAQRLQISDYQQLESIYFRILLPYE 99


>pdb|2LI6|A Chain A, 1h, 13c, And 15n Chemical Shift Assignments For Yeast
           Protein
          Length = 116

 Score = 27.7 bits (60), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 43  WNLVVQHPNFDNLTQLFSFYYKSLTPYE 70
           W++V Q     +  QL S Y++ L PYE
Sbjct: 73  WSMVAQRLQISDYQQLESIYFRILLPYE 100


>pdb|1GVN|B Chain B, Crystal Structure Of The Plasmid Maintenance System
           EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
           Function
 pdb|1GVN|D Chain D, Crystal Structure Of The Plasmid Maintenance System
           EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
           Function
 pdb|3Q8X|B Chain B, Structure Of A Toxin-Antitoxin System Bound To Its
           Substrate
 pdb|3Q8X|D Chain D, Structure Of A Toxin-Antitoxin System Bound To Its
           Substrate
          Length = 287

 Score = 27.3 bits (59), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 48  QHPNFDNLTQLFSF-YYKSLTPYEGLNDTAMLWGI--KFYNDFLSEAGSNGNV 97
           QHPNFD L +L+     K +TPY      A++  +  + YN  +   G   +V
Sbjct: 72  QHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDV 124


>pdb|2JF6|A Chain A, Structure Of Inactive Mutant Of Strictosidine Glucosidase
           In Complex With Strictosidine
 pdb|2JF6|B Chain B, Structure Of Inactive Mutant Of Strictosidine Glucosidase
           In Complex With Strictosidine
 pdb|2JF7|A Chain A, Structure Of Strictosidine Glucosidase
 pdb|2JF7|B Chain B, Structure Of Strictosidine Glucosidase
          Length = 532

 Score = 26.2 bits (56), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 22/45 (48%)

Query: 59  FSFYYKSLTPYEGLNDTAMLWGIKFYNDFLSEAGSNGNVQSELLF 103
           FS  +  + P   L       G+KFY+DF+ E  +NG   S  LF
Sbjct: 116 FSISWSRVLPGGRLAAGVNKDGVKFYHDFIDELLANGIKPSVTLF 160


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.138    0.474 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,184,188
Number of Sequences: 62578
Number of extensions: 202988
Number of successful extensions: 446
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 443
Number of HSP's gapped (non-prelim): 7
length of query: 169
length of database: 14,973,337
effective HSP length: 92
effective length of query: 77
effective length of database: 9,216,161
effective search space: 709644397
effective search space used: 709644397
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)