Query 030916
Match_columns 169
No_of_seqs 104 out of 135
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 10:02:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030916.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030916hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ndz_E Endoglucanase D; cellot 79.5 16 0.00054 26.7 9.5 102 11-130 3-105 (107)
2 1exg_A EXO-1,4-beta-D-glycanas 70.3 28 0.00094 25.1 8.8 101 9-130 8-108 (110)
3 3icg_A Endoglucanase D; cellul 62.3 49 0.0017 28.9 9.5 104 10-131 382-486 (515)
4 3arc_L Photosystem II reaction 30.6 45 0.0015 20.9 2.9 23 146-168 12-34 (37)
5 1c7s_A Beta-N-acetylhexosamini 24.6 94 0.0032 30.3 5.3 39 10-48 10-63 (858)
6 3vhx_B Kinesin-like protein KI 20.5 33 0.0011 26.3 1.1 27 92-129 75-106 (120)
7 3sqi_A KLLA0E03807P; DNA recom 16.6 38 0.0013 31.6 0.7 10 113-122 217-228 (534)
8 1e5b_A Xylanase D; hydrolase, 15.7 88 0.003 21.8 2.3 39 16-60 8-46 (87)
9 2knc_B Integrin beta-3; transm 12.1 2.2E+02 0.0076 19.6 3.5 7 126-132 1-7 (79)
10 1f0z_A THis protein; ubiquitin 11.8 1.1E+02 0.0038 19.4 1.8 13 121-133 2-14 (66)
No 1
>3ndz_E Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_E*
Probab=79.46 E-value=16 Score=26.66 Aligned_cols=102 Identities=19% Similarity=0.273 Sum_probs=65.2
Q ss_pred eeEEEEEeeCCCCceEEEEEEEecCCCcCCcceeEEeecCCCCCcceEEEecceecCCCCCCCcceEEEcccchhHHhhh
Q 030916 11 IRVHWHVKLNYKEYWRVKITITNFNYAMNYSLWNLVVQHPNFDNLTQLFSFYYKSLTPYEGLNDTAMLWGIKFYNDFLSE 90 (169)
Q Consensus 11 V~InWHV~~nYk~~W~vkiTi~N~~~~~ny~dW~lvvq~pn~~~~~~vySFN~t~l~~y~~~N~T~m~~Gl~~~N~ll~~ 90 (169)
.++...|..+..+|..++|||+|=. ......|.+-...|.=..+++.+.=..+. .-++..+... .||--|.
T Consensus 3 c~v~y~v~~~W~~Gf~~~vtVtN~g-~~~i~gWtv~~~~p~g~~it~~Wna~~s~------sG~~vt~~n~-~wN~~la- 73 (107)
T 3ndz_E 3 VEVTYAITNSWGSGASVNVTIKNNG-TTPINGWTLKWTMPINQTITNMWSASFVA------SGTTLSVTNA-GYNGTIA- 73 (107)
T ss_dssp EEEEEEEEEECSSEEEEEEEEEECS-SSCEESCEEEEECCTTEEEEEEESEEEEE------ETTEEEEEEC-STTCEEC-
T ss_pred cEEEEEEcccCCCCEEEEEEEEeCC-CCcccCcEEEEEcCCCCEEecccceEEEe------cCCEEEEEEC-CcccccC-
Confidence 4677788899999999999999976 36788999999999744555555333221 1134444433 2343322
Q ss_pred cCCC-CceeEEEEEEecCCCccccccccCceeeEeeCCccC
Q 030916 91 AGSN-GNVQSELLFRKDASTFTFEKGWAFPRRIYFNGDNCV 130 (169)
Q Consensus 91 ~g~~-GkvQSeilf~K~~~~~~~~~G~~FP~rVyFNGeeC~ 130 (169)
+ |- -.++-|.-.. .+..+=|+...+||..|.
T Consensus 74 ---~~G~-s~~fGf~g~~-----~G~~~~P~~~~lnG~~C~ 105 (107)
T 3ndz_E 74 ---ANGG-TQSFGFNINY-----SGVLSKPTGFTVNGTECT 105 (107)
T ss_dssp ---TTTE-EEEEEEEEEE-----CSSCCCCSCCEETTEECE
T ss_pred ---CCCc-cEEEEEEEeC-----CCCCCCCcEEEECCCccc
Confidence 2 32 2344443321 123567999999999995
No 2
>1exg_A EXO-1,4-beta-D-glycanase; cellulose binding domain, cellulose degradation; NMR {Cellulomonas fimi} SCOP: b.2.2.1 PDB: 1exh_A
Probab=70.32 E-value=28 Score=25.12 Aligned_cols=101 Identities=16% Similarity=0.280 Sum_probs=62.9
Q ss_pred CceeEEEEEeeCCCCceEEEEEEEecCCCcCCcceeEEeecCCCCCcceEEEecceecCCCCCCCcceEEEcccchhHHh
Q 030916 9 CPIRVHWHVKLNYKEYWRVKITITNFNYAMNYSLWNLVVQHPNFDNLTQLFSFYYKSLTPYEGLNDTAMLWGIKFYNDFL 88 (169)
Q Consensus 9 CpV~InWHV~~nYk~~W~vkiTi~N~~~~~ny~dW~lvvq~pn~~~~~~vySFN~t~l~~y~~~N~T~m~~Gl~~~N~ll 88 (169)
|-|+. . ..+...+..++|||+|=. .....+|.+-+..|.=..+++ +.|.+.-. ..++..+-. ..||--|
T Consensus 8 c~v~y--~-~~~W~~Gf~~~vtVtN~g-~~~i~gWtv~~~~~~g~~i~~--~Wna~~s~----sG~~vt~~n-~~wN~~l 76 (110)
T 1exg_A 8 CQVLW--G-VNQWNTGFTANVTVKNTS-SAPVDGWTLTFSFPSGQQVTQ--AWSSTVTQ----SGSAVTVRN-APWNGSI 76 (110)
T ss_dssp EEEEC--C-EEESSSEEEEEEEEEECS-SSCEESEEEEEECSSSCEEEE--EESSEEEE----ETTEEEEEE-CSGGGEE
T ss_pred EEEEE--E-eCCCCCCEEEEEEEEeCC-CCcccceEEEEEcCCCcEEec--ccceEEEc----cCCEEEEec-cccccee
Confidence 54444 3 578899999999999966 467889999999887333444 45555321 123444444 3455544
Q ss_pred hhcCCCCceeEEEEEEecCCCccccccccCceeeEeeCCccC
Q 030916 89 SEAGSNGNVQSELLFRKDASTFTFEKGWAFPRRIYFNGDNCV 130 (169)
Q Consensus 89 ~~~g~~GkvQSeilf~K~~~~~~~~~G~~FP~rVyFNGeeC~ 130 (169)
. +|- ..++-|.-.. .+...=|....+||..|.
T Consensus 77 a----~G~-s~~fGf~~~~-----~g~~~~Pt~~~lnG~~C~ 108 (110)
T 1exg_A 77 P----AGG-TAQFGFNGSH-----TGTNAAPTAFSLNGTPCT 108 (110)
T ss_dssp C----SSE-EEEEEEEEEC-----SSSCCCCSCEEETTEEEE
T ss_pred C----CCc-EEEEEEEEeC-----CCCCCCCceEEEcCcccC
Confidence 3 222 2455555432 122455899999999995
No 3
>3icg_A Endoglucanase D; cellulase, xylanase, carbohydrate binding DOM glucanase, carbohydrate metabolism, cellulose degradation, glycosidase; HET: BTB; 2.10A {Clostridium cellulovorans}
Probab=62.34 E-value=49 Score=28.92 Aligned_cols=104 Identities=17% Similarity=0.240 Sum_probs=66.3
Q ss_pred ceeEEEEEeeCCCCceEEEEEEEecCCCcCCcceeEEeecCCCCCcceEEEecceecCCCCCCCcceEEEcccchhHHhh
Q 030916 10 PIRVHWHVKLNYKEYWRVKITITNFNYAMNYSLWNLVVQHPNFDNLTQLFSFYYKSLTPYEGLNDTAMLWGIKFYNDFLS 89 (169)
Q Consensus 10 pV~InWHV~~nYk~~W~vkiTi~N~~~~~ny~dW~lvvq~pn~~~~~~vySFN~t~l~~y~~~N~T~m~~Gl~~~N~ll~ 89 (169)
+.++-..|.++..+|..+.|||+|=. ......|.+-+..|.-..+++++ |++.-. ...+..+... .||--|.
T Consensus 382 ~~~~~~~~~~~W~~g~~~~v~v~n~~-~~~~~~W~~~~~~~~~~~i~~~w--n~~~~~----~g~~~~~~~~-~~n~~~~ 453 (515)
T 3icg_A 382 AVEVTYAITNSWGSGASVNVTIKNNG-TTPINGWTLKWTMPINQTITNMW--SASFVA----SGTTLSVTNA-GYNGTIA 453 (515)
T ss_dssp CEEEEEEEEEECSSEEEEEEEEEECS-SSCEESCEEEEECCTTEEEEEEE--SEEEEE----ETTEEEEEEC-STTCEEC
T ss_pred ceEEEEEEecCCCCccEEEEEEEeCC-CCCcCCeEEEEEeCCCCEeeccc--cceEEe----cCCeEEEecC-ccccccC
Confidence 45677789999999999999999977 47788999999999755566655 444221 1234444433 2333222
Q ss_pred hcCCC-CceeEEEEEEecCCCccccccccCceeeEeeCCccCC
Q 030916 90 EAGSN-GNVQSELLFRKDASTFTFEKGWAFPRRIYFNGDNCVM 131 (169)
Q Consensus 90 ~~g~~-GkvQSeilf~K~~~~~~~~~G~~FP~rVyFNGeeC~m 131 (169)
+ | .-.++-|.-.. .+..+=|+...+||..|.-
T Consensus 454 ----~~g-~s~~~gf~~~~-----~g~~~~p~~~~lng~~c~~ 486 (515)
T 3icg_A 454 ----ANG-GTQSFGFNINY-----SGVLSKPTGFTVNGTECTV 486 (515)
T ss_dssp ----TTT-EEEEEEEEEEE-----CSSCCCCSCCEETTEECEE
T ss_pred ----CCC-ceEEEEEEEeC-----CCCCCCCceEEECCcccCC
Confidence 2 2 12233333221 2334678999999999966
No 4
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=30.56 E-value=45 Score=20.94 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=18.3
Q ss_pred CcchhHHHHHHHHHHHHHHHHhc
Q 030916 146 RPVISLLRSAIIILASWVLLLAY 168 (169)
Q Consensus 146 ~~~~~~~~~~l~~~~~~~~~~~~ 168 (169)
-.+.|+...+|++.+.+++++.|
T Consensus 12 LNRTSLy~GLLlifvlavlFssy 34 (37)
T 3arc_L 12 LNRTSLYLGLLLILVLALLFSSY 34 (37)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred echhhHHHHHHHHHHHHHHhhhh
Confidence 45677888888888888888876
No 5
>1c7s_A Beta-N-acetylhexosaminidase; glycosyl hydrolase, chitinolysis, A/B(TIM)-barrel, site directed mutagenesis; HET: CBS; 1.80A {Serratia marcescens} SCOP: b.1.18.2 b.2.2.3 c.1.8.6 d.92.2.1 PDB: 1c7t_A* 1qba_A 1qbb_A*
Probab=24.63 E-value=94 Score=30.25 Aligned_cols=39 Identities=18% Similarity=0.211 Sum_probs=31.5
Q ss_pred ceeEEEEEeeCCCC---------------ceEEEEEEEecCCCcCCcceeEEee
Q 030916 10 PIRVHWHVKLNYKE---------------YWRVKITITNFNYAMNYSLWNLVVQ 48 (169)
Q Consensus 10 pV~InWHV~~nYk~---------------~W~vkiTi~N~~~~~ny~dW~lvvq 48 (169)
++.|+|.|..|+-+ .-|+.|||+|-+-..+-.||.+..-
T Consensus 10 ~l~~~~~~~~n~~~~~~~~c~~~~~~~~~~~~~~~tl~n~~~~~~~~~w~iyf~ 63 (858)
T 1c7s_A 10 QLKLNVKMLDNRAGENGVDCAALGADWASCNRVLFTLSNDGQAIDGKDWVIYFH 63 (858)
T ss_dssp TCEEEEEEEETTGGGGTCCTTTTTCGGGCEEEEEEEEEECSSCBCCCCCEEEEE
T ss_pred cceEEEEEecCcccccccccccccccccceeEEEEEEEcCCCCcCCCCcEEEEe
Confidence 68999999888754 3899999999955688889977543
No 6
>3vhx_B Kinesin-like protein KIF23; small GTPase, GTP binding, flemming BODY, cytokinesis, cell signaling protein complex; HET: GTP; 2.81A {Homo sapiens}
Probab=20.50 E-value=33 Score=26.34 Aligned_cols=27 Identities=22% Similarity=0.430 Sum_probs=19.3
Q ss_pred CCCCceeEEEEEEecCCCccccccccCce-----eeEeeCCcc
Q 030916 92 GSNGNVQSELLFRKDASTFTFEKGWAFPR-----RIYFNGDNC 129 (169)
Q Consensus 92 g~~GkvQSeilf~K~~~~~~~~~G~~FP~-----rVyFNGeeC 129 (169)
+..|++.+.| .||+=||+ -|.||+-||
T Consensus 75 dsdGeieTkL-----------~KGdV~~T~gGG~~V~FtDiE~ 106 (120)
T 3vhx_B 75 ASDGEIETKL-----------IKGDIYKTRGGGQSVQFTDIET 106 (120)
T ss_dssp CTTSCEEEEE-----------EEEEEEECTTSCEEEEEEEEEE
T ss_pred cCCCcEEEEE-----------EEeeEEeecCCceEEEecchhe
Confidence 5567776655 45666665 599999999
No 7
>3sqi_A KLLA0E03807P; DNA recombinase, DNA binding, DNA binding protein-DNA C; HET: DNA; 2.82A {Kluyveromyces lactis} PDB: 3t79_A*
Probab=16.56 E-value=38 Score=31.61 Aligned_cols=10 Identities=20% Similarity=0.382 Sum_probs=7.5
Q ss_pred cccccCc--eee
Q 030916 113 EKGWAFP--RRI 122 (169)
Q Consensus 113 ~~G~~FP--~rV 122 (169)
-+||||| ++.
T Consensus 217 yKGDGFPdLs~~ 228 (534)
T 3sqi_A 217 YKGDGYQILSQL 228 (534)
T ss_dssp EECCCTTHHHHC
T ss_pred cCCCCCcccccc
Confidence 4799999 554
No 8
>1e5b_A Xylanase D; hydrolase, xylan binding domain, beta-sheet; NMR {Cellulomonas fimi} SCOP: b.2.2.1 PDB: 1e5c_A 1xbd_A 2xbd_A
Probab=15.69 E-value=88 Score=21.79 Aligned_cols=39 Identities=8% Similarity=0.238 Sum_probs=30.1
Q ss_pred EEeeCCCCceEEEEEEEecCCCcCCcceeEEeecCCCCCcceEEE
Q 030916 16 HVKLNYKEYWRVKITITNFNYAMNYSLWNLVVQHPNFDNLTQLFS 60 (169)
Q Consensus 16 HV~~nYk~~W~vkiTi~N~~~~~ny~dW~lvvq~pn~~~~~~vyS 60 (169)
.+..+..+|..++|||+| -..|.+-...|.=.-+++.+.
T Consensus 8 ~v~~~W~~Gf~~~vtVtn------~~gWtv~~~~~~g~~i~~~Wn 46 (87)
T 1e5b_A 8 TRAEEWSDGFNVTYSVSG------SSAWTVNLALNGSQTIQASWN 46 (87)
T ss_dssp CBCCCCSSEEEEEEBCCS------CSSCCCEEECCTTCCEEEEES
T ss_pred EECccCCCCEEEEEEEEc------cCceEEEEEcCCCCEEeeeec
Confidence 455678899999999997 268999999987555666543
No 9
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=12.07 E-value=2.2e+02 Score=19.63 Aligned_cols=7 Identities=14% Similarity=-0.087 Sum_probs=4.3
Q ss_pred CCccCCC
Q 030916 126 GDNCVMP 132 (169)
Q Consensus 126 GeeC~mP 132 (169)
|++|.-|
T Consensus 1 ~~~Cp~~ 7 (79)
T 2knc_B 1 GAMGSKG 7 (79)
T ss_dssp CCSSCSS
T ss_pred CCCCCCC
Confidence 6777644
No 10
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=11.77 E-value=1.1e+02 Score=19.42 Aligned_cols=13 Identities=23% Similarity=0.368 Sum_probs=11.2
Q ss_pred eeEeeCCccCCCC
Q 030916 121 RIYFNGDNCVMPP 133 (169)
Q Consensus 121 rVyFNGeeC~mP~ 133 (169)
+|.+||++..+|.
T Consensus 2 ~i~vNg~~~~~~~ 14 (66)
T 1f0z_A 2 QILFNDQAMQCAA 14 (66)
T ss_dssp CEEESSCEECCCT
T ss_pred EEEECCEEEEcCC
Confidence 5889999998876
Done!