BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030917
(169 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2J8K|A Chain A, Structure Of The Fusion Of Np275 And Np276, Pentapeptide
Repeat Proteins From Nostoc Punctiforme
Length = 201
Score = 33.5 bits (75), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKF-----NGAYLEKAVAYKANFTG 165
A +A+L +A+ N R A+ + A++ +D SG+ + A L +A +AN TG
Sbjct: 120 ANLKAANLEQAILSHANIREADLSEANLEAADLSGADLAIADLHQANLHQAALERANLTG 179
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANF 163
A ADL A + R AN + AD+ ++ + GA L++AV +AN
Sbjct: 70 ANLSRADLSGATLNGADLRGANLSKADLSDAILDNAILEGAILDEAVLNQANL 122
Score = 29.6 bits (65), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 10/62 (16%)
Query: 113 FGSADLRKAVHVKENFR----------RANFTSADMRESDFSGSKFNGAYLEKAVAYKAN 162
F DLR AV N AN A++ +D SG+ NGA L A KA+
Sbjct: 37 FSIVDLRGAVLENINLSGAILHGAMLDEANLQQANLSRADLSGATLNGADLRGANLSKAD 96
Query: 163 FT 164
+
Sbjct: 97 LS 98
>pdb|3DU1|X Chain X, The 2.0 Angstrom Resolution Crystal Structure Of Hetl, A
Pentapeptide Repeat Protein Involved In Heterocyst
Differentiation Regulation From The Cyanobacterium
Nostoc Sp. Strain Pcc 7120
Length = 257
Score = 32.7 bits (73), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%)
Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGTK 167
+ A ADLR+ K NF AD+ E+ G + A L +A+ +A+ TG K
Sbjct: 53 TGADLSYADLRQTRLGKSNFSHTCLREADLSEAILWGIDLSEADLYRAILREADLTGAK 111
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 116 ADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTG 165
ADL +A+ + A+ A +RE+D +G+K LE+A KA+ G
Sbjct: 80 ADLSEAILWGIDLSEADLYRAILREADLTGAKLVKTRLEEANLIKASLCG 129
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 13/70 (18%)
Query: 109 SAAQFGSADLRKAVHVKENFR-----RANF--------TSADMRESDFSGSKFNGAYLEK 155
+ A ADLR A N RANF +AD+ + G+ + A LE
Sbjct: 163 TGADLSYADLRAASLHHANLDGAKLCRANFGRTIQWGNLAADLSGASLQGADLSYANLES 222
Query: 156 AVAYKANFTG 165
A+ KAN G
Sbjct: 223 AILRKANLQG 232
>pdb|2J8I|A Chain A, Structure Of Np275, A Pentapeptide Repeat Protein From
Nostoc Punctiforme
pdb|2J8I|B Chain B, Structure Of Np275, A Pentapeptide Repeat Protein From
Nostoc Punctiforme
Length = 118
Score = 29.6 bits (65), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 10/62 (16%)
Query: 113 FGSADLRKAVHVKENFR----------RANFTSADMRESDFSGSKFNGAYLEKAVAYKAN 162
F DLR AV N AN A++ +D SG+ NGA L A KA+
Sbjct: 37 FSIVDLRGAVLENINLSGAILHGAMLDEANLQQANLSRADLSGATLNGADLRGANLSKAD 96
Query: 163 FT 164
+
Sbjct: 97 LS 98
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAV 157
A ADL A + R AN + AD+ ++ + GA L++AV
Sbjct: 70 ANLSRADLSGATLNGADLRGANLSKADLSDAILDNAILEGAILDEAV 116
>pdb|2G0Y|A Chain A, Crystal Structure Of A Lumenal Pentapeptide Repeat Protein
From Cyanothece Sp 51142 At 2.3 Angstrom Resolution.
Tetragonal Crystal Form
Length = 184
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 15/60 (25%)
Query: 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGS-----KFNGAYLEKAVAYKANFTG 165
AQF +ADL + NF+ AD+R + F+GS +GA L +AY +F G
Sbjct: 72 AQFTNADLTDS----------NFSEADLRGAVFNGSALIGADLHGADLTNGLAYLTSFKG 121
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 91 LADLNKYEAETRGEFGIGSA---AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSK 147
L D N EA+ RG GSA A ADL + +F+ A+ T+A + E+ +K
Sbjct: 79 LTDSNFSEADLRGAVFNGSALIGADLHGADLTNGLAYLTSFKGADLTNAVLTEAIMMRTK 138
Query: 148 FNGAYLEKA 156
F+ A + A
Sbjct: 139 FDDAKITGA 147
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 108 GSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFS-----GSKFNGAYLEKAVAYKAN 162
GS+A + L ++ A FT+AD+ +S+FS G+ FNG+ L A + A+
Sbjct: 49 GSSASYEDVKLIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGAD 108
Query: 163 FT 164
T
Sbjct: 109 LT 110
>pdb|2F3L|A Chain A, Crystal Structure Of A Lumenal Rfr-Domain Protein
(Contig83.1_1_243_746) From Cyanothece Sp. 51142 At 2.1
Angstrom Resolution
Length = 184
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 15/60 (25%)
Query: 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGS-----KFNGAYLEKAVAYKANFTG 165
AQF +ADL + NF+ AD+R + F+GS +GA L +AY +F G
Sbjct: 72 AQFTNADLTDS----------NFSEADLRGAVFNGSALIGADLHGADLTNGLAYLTSFKG 121
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 91 LADLNKYEAETRGEFGIGSA---AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSK 147
L D N EA+ RG GSA A ADL + +F+ A+ T+A + E+ +K
Sbjct: 79 LTDSNFSEADLRGAVFNGSALIGADLHGADLTNGLAYLTSFKGADLTNAVLTEAIXXRTK 138
Query: 148 FNGAYLEKA 156
F+ A + A
Sbjct: 139 FDDAKITGA 147
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 108 GSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFS-----GSKFNGAYLEKAVAYKAN 162
GS+A + L ++ A FT+AD+ +S+FS G+ FNG+ L A + A+
Sbjct: 49 GSSASYEDVKLIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGAD 108
Query: 163 FT 164
T
Sbjct: 109 LT 110
>pdb|3N90|A Chain A, The 1.7 Angstrom Resolution Crystal Structure Of
At2g44920, A Pentapeptide Repeat Protein From
Arabidopsis Thaliana Thylakoid Lumen
Length = 152
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 116 ADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTG 165
A+ + A + +F A+ T AD+ E+D G+ F+ A + K AN G
Sbjct: 41 ANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEG 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.127 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,116,989
Number of Sequences: 62578
Number of extensions: 127326
Number of successful extensions: 219
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 168
Number of HSP's gapped (non-prelim): 45
length of query: 169
length of database: 14,973,337
effective HSP length: 92
effective length of query: 77
effective length of database: 9,216,161
effective search space: 709644397
effective search space used: 709644397
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)