BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030917
(169 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8H1Q1|TL225_ARATH Thylakoid lumenal protein At1g12250, chloroplastic OS=Arabidopsis
thaliana GN=At1g12250 PE=1 SV=1
Length = 280
Score = 150 bits (380), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 98/168 (58%), Positives = 122/168 (72%), Gaps = 8/168 (4%)
Query: 1 MALSSISPLSIKSLNFCSSSSKGPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQ--- 57
MA SS+SPL +KSL+ SSS + + L Q+SS+ S+ + D SN +
Sbjct: 1 MAFSSLSPLPMKSLDISRSSSSVSRSPYHFQRYLLRRLQLSSR--SNLEIKDSSNTREGC 58
Query: 58 CAGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSAD 117
C+ A+ W+ +S A+AAAV+AS SS + A+A+LN++EA+TRGEFGIGSAAQ+GSAD
Sbjct: 59 CSS--AESNTWKRILSAAMAAAVIAS-SSGVPAMAELNRFEADTRGEFGIGSAAQYGSAD 115
Query: 118 LRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTG 165
L K VH ENFRRANFTSADMRESDFSGS FNGAYLEKAVAYKANF+G
Sbjct: 116 LSKTVHSNENFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKANFSG 163
>sp|P74297|SPKB_SYNY3 Serine/threonine-protein kinase B OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=spkB PE=1 SV=1
Length = 574
Score = 40.4 bits (93), Expect = 0.005, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 7/95 (7%)
Query: 71 FVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRR 130
V LA A V + + L + N +AE + A FG A L+ + N
Sbjct: 456 LVGIVLAKAFVPGINCYQANLTNANFEQAEL-------TRADFGKARLKNVIFKGANLSD 508
Query: 131 ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTG 165
A F AD+R +D G+ NG + A ANF+G
Sbjct: 509 AYFGYADLRGADLRGANLNGVNFKYANLQGANFSG 543
>sp|Q52118|YMO3_ERWST Uncharacterized protein in mobD 3'region OS=Erwinia stewartii PE=4
SV=1
Length = 295
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%)
Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGTK 167
S A +ADL++A N AN T+ D++ +D S + GA L N TGTK
Sbjct: 230 SNANLSNADLKRADLSDANLSDANLTNVDLKRADLSNAILKGANLLHINVEGTNMTGTK 288
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKA 156
S A A+L A + + AN ++AD++ +D S + +GA L A
Sbjct: 150 SGANLAHANLTMAYLSEADLSNANLSNADLKRADLSNANLSGADLTNA 197
>sp|P05530|MCBG_ECOLX Protein McbG OS=Escherichia coli GN=mcbG PE=4 SV=1
Length = 187
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGTK 167
F S L+K++ + FR F D+R+SDF+GS+FN + +F+ T+
Sbjct: 97 VDFISLRLQKSIFLSCRFRDCLFEETDLRKSDFTGSEFNNTEFRHSDLSHCDFSMTE 153
>sp|P73063|Y1851_SYNY3 Uncharacterized protein slr1851 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr1851 PE=4 SV=1
Length = 162
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Query: 109 SAAQFGSADLRKAVHVKE------NFRRANFTSADMRESDFSGSKFNGAYL-EKAVAYKA 161
S A+ G ADLRKA ++ E + R N A++ +DFS + GAY+ + AV
Sbjct: 101 SGAKLGGADLRKA-NLSEASLRGADLRGVNLIEANLTNTDFSEADLTGAYISDGAVINVV 159
Query: 162 NFT 164
N +
Sbjct: 160 NLS 162
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 131 ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTG 165
AN AD+ +D SG+K GA L KA +A+ G
Sbjct: 88 ANLVGADLTNADLSGAKLGGADLRKANLSEASLRG 122
>sp|Q55837|Y516_SYNY3 Uncharacterized protein slr0516 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr0516 PE=4 SV=1
Length = 166
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 127 NFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGTKRS 169
+ R N +A + SD SG+ +G L +A+ +AN TG S
Sbjct: 49 DLREFNLENARLNRSDLSGANLSGVNLRRALLDRANLTGANLS 91
Score = 33.9 bits (76), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 92 ADLNKYEAET-RGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRES-----DFSG 145
ADL ++ E R S A +LR+A+ + N AN + D+ E+ + +G
Sbjct: 48 ADLREFNLENARLNRSDLSGANLSGVNLRRALLDRANLTGANLSETDLTEAALTEANLAG 107
Query: 146 SKFNGAYLEKAVAYKANFTG 165
+ +GA LE++ + TG
Sbjct: 108 ADLSGANLERSFLRDVDLTG 127
>sp|P37497|YYBG_BACSU Uncharacterized protein YybG OS=Bacillus subtilis (strain 168)
GN=yybG PE=4 SV=1
Length = 279
Score = 33.9 bits (76), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Query: 115 SADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGA-YLEKAVAYKAN 162
+ADLR A + R +F ADMR++D SG+ G+ +L +A AN
Sbjct: 218 AADLRNA-----DLRMTDFIGADMRDADLSGADLTGSIFLTQAQVNAAN 261
>sp|P85304|TL18_SPIOL Thylakoid lumenal 18.3 kDa protein (Fragment) OS=Spinacia oleracea
PE=1 SV=1
Length = 18
Score = 33.5 bits (75), Expect = 0.61, Method: Composition-based stats.
Identities = 15/18 (83%), Positives = 16/18 (88%)
Query: 93 DLNKYEAETRGEFGIGSA 110
DLNK+EAE RGEFGI SA
Sbjct: 1 DLNKFEAEMRGEFGIXSA 18
>sp|Q8ZMM8|PIPB2_SALTY Secreted effector protein pipB2 OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=pipB2 PE=1 SV=1
Length = 350
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 114 GSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGTKRS 169
G +L+ AV AN TS ++ ++D SG+ GA L A ANF G S
Sbjct: 150 GGMNLKGAV-----LTGANLTSENLCDADLSGANLEGAVLFMADCEGANFKGANLS 200
>sp|P73709|Y1819_SYNY3 Uncharacterized protein slr1819 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr1819 PE=4 SV=1
Length = 331
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFT 164
S A A+LR K + AN A + +++ SG+K NGA L+ A +A +
Sbjct: 174 SYANLKEANLRDVDLRKADLSYANLKGALLTDANLSGAKLNGADLQNANLMRAKIS 229
>sp|P0C6V1|R1A_CVMJH Replicase polyprotein 1a OS=Murine coronavirus (strain JHM) GN=1a
PE=1 SV=1
Length = 4474
Score = 29.6 bits (65), Expect = 9.2, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 8 PLSIKSLNFCSSSSKGPYQLHALSKP---LWVACQISSKTESDGQFPDC 53
P + + N + S G Y H KP L+ AC +S +E+ G F DC
Sbjct: 1856 PDDVVAANIFTGGSVGHYT-HVKCKPKYQLYDACNVSKVSEAKGNFTDC 1903
>sp|P0C6Y0|R1AB_CVMJH Replicase polyprotein 1ab OS=Murine coronavirus (strain JHM) GN=rep
PE=1 SV=1
Length = 7180
Score = 29.6 bits (65), Expect = 9.5, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 8 PLSIKSLNFCSSSSKGPYQLHALSKP---LWVACQISSKTESDGQFPDC 53
P + + N + S G Y H KP L+ AC +S +E+ G F DC
Sbjct: 1856 PDDVVAANIFTGGSVGHYT-HVKCKPKYQLYDACNVSKVSEAKGNFTDC 1903
>sp|Q9SE95|FIP2_ARATH FH protein interacting protein FIP2 OS=Arabidopsis thaliana GN=FIP2
PE=1 SV=1
Length = 298
Score = 29.6 bits (65), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Query: 99 AETRGEFGIGSAAQFGSADLRKAVHVKENF-----RRANFTSADMRESDFSGSKFNGAYL 153
A RG G+ Q SA+L+ A V +F R A+ +AD+ ++ G+ GA L
Sbjct: 196 ANLRGALLAGTNLQ--SANLQDACLVGCSFCGADLRTAHLQNADLTNANLEGANLEGANL 253
Query: 154 EKAVAYKANFTG 165
+ A ANF G
Sbjct: 254 KGAKLSNANFKG 265
>sp|P0C6U9|R1A_CVM2 Replicase polyprotein 1a OS=Murine coronavirus (strain 2) GN=1a PE=3
SV=1
Length = 4416
Score = 29.6 bits (65), Expect = 10.0, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 8 PLSIKSLNFCSSSSKGPYQLHALSKP---LWVACQISSKTESDGQFPDC 53
P + + N + S G Y H KP L+ AC +S +E+ G F DC
Sbjct: 1804 PDDVVAANIFTGGSLGHYT-HVKCKPKYQLYDACNVSKVSEAKGNFTDC 1851
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.125 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,902,739
Number of Sequences: 539616
Number of extensions: 2031439
Number of successful extensions: 4286
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 4212
Number of HSP's gapped (non-prelim): 63
length of query: 169
length of database: 191,569,459
effective HSP length: 109
effective length of query: 60
effective length of database: 132,751,315
effective search space: 7965078900
effective search space used: 7965078900
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)