Query 030917
Match_columns 169
No_of_seqs 222 out of 1256
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 06:32:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030917.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030917hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15377 E3 ubiquitin-protein 99.3 5.8E-13 1.3E-17 126.1 4.0 25 40-64 121-150 (782)
2 PF13599 Pentapeptide_4: Penta 99.0 2.5E-10 5.4E-15 77.9 3.7 57 109-165 14-71 (78)
3 PRK15377 E3 ubiquitin-protein 99.0 3.2E-10 7E-15 107.7 5.6 17 35-51 85-101 (782)
4 PF13599 Pentapeptide_4: Penta 99.0 3.9E-10 8.5E-15 77.0 3.2 60 109-168 4-64 (78)
5 PRK15196 secreted effector pro 98.9 3.7E-10 7.9E-15 99.7 2.8 58 111-168 267-324 (350)
6 KOG1665 AFH1-interacting prote 98.9 7.1E-10 1.5E-14 93.3 2.6 65 103-167 217-282 (302)
7 KOG1665 AFH1-interacting prote 98.8 1.3E-09 2.8E-14 91.7 2.2 58 111-168 216-273 (302)
8 PRK09718 hypothetical protein; 98.7 5.7E-09 1.2E-13 95.3 3.4 66 103-168 151-220 (512)
9 PRK09718 hypothetical protein; 98.6 3.6E-08 7.8E-13 90.1 3.9 67 102-168 160-230 (512)
10 PF13576 Pentapeptide_3: Penta 97.5 2.7E-05 5.9E-10 49.7 0.7 28 122-149 11-39 (48)
11 PRK09716 hypothetical protein; 45.5 9.6 0.00021 33.1 0.8 50 117-166 152-201 (395)
12 TIGR01299 synapt_SV2 synaptic 25.3 25 0.00054 34.3 0.2 39 113-151 516-554 (742)
13 PLN00077 photosystem II reacti 20.4 2.2E+02 0.0048 22.0 4.4 26 19-45 17-44 (128)
No 1
>PRK15377 E3 ubiquitin-protein ligase SopA; Provisional
Probab=99.34 E-value=5.8e-13 Score=126.11 Aligned_cols=25 Identities=16% Similarity=0.080 Sum_probs=17.7
Q ss_pred eccCCCCCCCCC-----CCCCcccCCCchh
Q 030917 40 ISSKTESDGQFP-----DCSNNQCAGPYAK 64 (169)
Q Consensus 40 ~~~~~~~~~~~p-----~~~~~~~~~~~~~ 64 (169)
|+...+++|.|| ++..+-|-.-++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (782)
T PRK15377 121 CDYNYRITGAAPLPGGVSVSANNRPTVSEG 150 (782)
T ss_pred cchhhcccCcCCcccCceEEecCCCccchh
Confidence 899999999998 5555555544433
No 2
>PF13599 Pentapeptide_4: Pentapeptide repeats (9 copies); PDB: 2XTY_A 2XTW_C 2XTX_B 3PSS_B 3PSZ_B 3NB2_B 3NAW_B 3SQV_A 2W7Z_B 2XT2_A ....
Probab=99.02 E-value=2.5e-10 Score=77.95 Aligned_cols=57 Identities=26% Similarity=0.505 Sum_probs=31.0
Q ss_pred CCceecCCccccceecccee-ccccccCcccCCccccCCccccccccCccccCceeec
Q 030917 109 SAAQFGSADLRKAVHVKENF-RRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTG 165 (169)
Q Consensus 109 ~g~dFs~a~L~~a~F~~a~L-~~anFs~AdL~~a~Fs~a~L~gA~f~~a~l~~a~f~g 165 (169)
.+++|.+++|++++|.+++| .+++|++++|.+++|++++|+++.|.+++|++++|++
T Consensus 14 ~~~~f~~~~~~~~~f~~~~~~~~~~f~~~~l~~~~f~~~~l~~~~f~~~~l~~~~f~~ 71 (78)
T PF13599_consen 14 SGANFSGSNFKNCNFSNCNFFKEANFSNCQLDNSDFSNCDLKRASFSNCDLDNCDFSG 71 (78)
T ss_dssp TTSBETTEEEESEBEETTBTTTTEBETTEBETTEBETTSBETTEEETTEB-TTEEETS
T ss_pred CCCEeECCEEECcEEECCccccCCeEECCCCCCCEEEeCEEeCCEEecCCccCCEeEe
Confidence 44555555555555555555 5555555555555555555555555555555555544
No 3
>PRK15377 E3 ubiquitin-protein ligase SopA; Provisional
Probab=99.01 E-value=3.2e-10 Score=107.69 Aligned_cols=17 Identities=0% Similarity=-0.161 Sum_probs=13.7
Q ss_pred eEEEeeccCCCCCCCCC
Q 030917 35 WVACQISSKTESDGQFP 51 (169)
Q Consensus 35 ~~~~~~~~~~~~~~~~p 51 (169)
..-|.++....+++.+|
T Consensus 85 ~~~~~~~~~~~~~~~~~ 101 (782)
T PRK15377 85 VKNIKDTNNAGKKNISA 101 (782)
T ss_pred hhhccccccccccCCCh
Confidence 34588888888889888
No 4
>PF13599 Pentapeptide_4: Pentapeptide repeats (9 copies); PDB: 2XTY_A 2XTW_C 2XTX_B 3PSS_B 3PSZ_B 3NB2_B 3NAW_B 3SQV_A 2W7Z_B 2XT2_A ....
Probab=98.97 E-value=3.9e-10 Score=76.96 Aligned_cols=60 Identities=20% Similarity=0.432 Sum_probs=43.3
Q ss_pred CCceecCCccccceeccceeccccccCccc-CCccccCCccccccccCccccCceeecccc
Q 030917 109 SAAQFGSADLRKAVHVKENFRRANFTSADM-RESDFSGSKFNGAYLEKAVAYKANFTGTKR 168 (169)
Q Consensus 109 ~g~dFs~a~L~~a~F~~a~L~~anFs~AdL-~~a~Fs~a~L~gA~f~~a~l~~a~f~gAdL 168 (169)
.+++|.+++|.+++|.+++|++++|++++| +++.|++++|.+++|.++++.+++|.+++|
T Consensus 4 ~~~~f~~~~l~~~~f~~~~~~~~~f~~~~~~~~~~f~~~~l~~~~f~~~~l~~~~f~~~~l 64 (78)
T PF13599_consen 4 ENCSFSGCNLSGANFSGSNFKNCNFSNCNFFKEANFSNCQLDNSDFSNCDLKRASFSNCDL 64 (78)
T ss_dssp ESEEEESCBCTTSBETTEEEESEBEETTBTTTTEBETTEBETTEBETTSBETTEEETTEB-
T ss_pred EEEEEECCCCCCCEeECCEEECcEEECCccccCCeEECCCCCCCEEEeCEEeCCEEecCCc
Confidence 346777777777777777777777777777 777777777777777777777777777665
No 5
>PRK15196 secreted effector protein PipB2; Provisional
Probab=98.94 E-value=3.7e-10 Score=99.69 Aligned_cols=58 Identities=24% Similarity=0.328 Sum_probs=24.4
Q ss_pred ceecCCccccceeccceeccccccCcccCCccccCCccccccccCccccCceeecccc
Q 030917 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGTKR 168 (169)
Q Consensus 111 ~dFs~a~L~~a~F~~a~L~~anFs~AdL~~a~Fs~a~L~gA~f~~a~l~~a~f~gAdL 168 (169)
++|.+++|++++|.+++|++++|.+|+|++++|.+++|++++|.+++|.+++|++++|
T Consensus 267 anfs~A~L~~a~f~~a~L~~A~f~~A~L~~Adf~~a~L~gadfs~A~L~~a~f~~a~l 324 (350)
T PRK15196 267 ADMSGATLQGATIMAAIMEGAVLTRANLRKASFISTNLDGADLAEANLNNTCFKDCTL 324 (350)
T ss_pred CccccccccccccccceecccccceeeccccEeeCCEecCCCCCCCccCCCccCCCCc
Confidence 3333333333333444444444444444444444444444444444444444444443
No 6
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=98.89 E-value=7.1e-10 Score=93.28 Aligned_cols=65 Identities=17% Similarity=0.294 Sum_probs=30.2
Q ss_pred CccCCC-CCceecCCccccceeccceeccccccCcccCCccccCCccccccccCccccCceeeccc
Q 030917 103 GEFGIG-SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGTK 167 (169)
Q Consensus 103 ~f~g~~-~g~dFs~a~L~~a~F~~a~L~~anFs~AdL~~a~Fs~a~L~gA~f~~a~l~~a~f~gAd 167 (169)
+..|++ .|++|.++++.++++..++|.++++.+++|+++++.|++|++++|++++|+.++++|++
T Consensus 217 NLeganLkG~~~egs~m~ginLrvA~Lknanle~~NLrgA~LaGadLencnlsG~dLQeAnLRg~N 282 (302)
T KOG1665|consen 217 NLEGANLKGADMEGSQMTGINLRVATLKNANLENCNLRGANLAGADLENCNLSGADLQEANLRGVN 282 (302)
T ss_pred cccccccccccccccccccceeEeccccccccccCccccccccCCccccCCCCCcchhHhhcccCc
Confidence 444444 55555555544444444444444444444444444444444444444444444444443
No 7
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=98.83 E-value=1.3e-09 Score=91.67 Aligned_cols=58 Identities=21% Similarity=0.308 Sum_probs=34.4
Q ss_pred ceecCCccccceeccceeccccccCcccCCccccCCccccccccCccccCceeecccc
Q 030917 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGTKR 168 (169)
Q Consensus 111 ~dFs~a~L~~a~F~~a~L~~anFs~AdL~~a~Fs~a~L~gA~f~~a~l~~a~f~gAdL 168 (169)
+++.+++|+|++|.+++++++++..|+|+++++.+|+|+||++.+++|+++||+|+||
T Consensus 216 aNLeganLkG~~~egs~m~ginLrvA~Lknanle~~NLrgA~LaGadLencnlsG~dL 273 (302)
T KOG1665|consen 216 ANLEGANLKGADMEGSQMTGINLRVATLKNANLENCNLRGANLAGADLENCNLSGADL 273 (302)
T ss_pred ccccccccccccccccccccceeEeccccccccccCccccccccCCccccCCCCCcch
Confidence 4455555555555555555555555555566666666666666666666666666555
No 8
>PRK09718 hypothetical protein; Validated
Probab=98.74 E-value=5.7e-09 Score=95.31 Aligned_cols=66 Identities=14% Similarity=0.190 Sum_probs=36.6
Q ss_pred CccCCC-CCceecCCccccceeccceeccccccCcccCCccccCCccccccccCccc---cCceeecccc
Q 030917 103 GEFGIG-SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVA---YKANFTGTKR 168 (169)
Q Consensus 103 ~f~g~~-~g~dFs~a~L~~a~F~~a~L~~anFs~AdL~~a~Fs~a~L~gA~f~~a~l---~~a~f~gAdL 168 (169)
.|.+.. .|++|++++|+++.|.+|+|++++|.+++|++++|++|+|.+++|.+|+| +++.|.+++|
T Consensus 151 sFinCKLsGAdFSgA~Lk~V~FsdCnL~yAnFsgAnLskA~F~gCDLseAdFSEcdLS~aKka~F~~cDL 220 (512)
T PRK09718 151 IFIKASGEYVDFSKNILDTVDFSQSQLTHSNFRECQIRNSNFDNCYLYASHFTRAEFLSAKEISFIKSNL 220 (512)
T ss_pred EEEeccccCcccccCccCCcEEeeeEecccCCCCCcCCCCEEeCccCCcCCccCCccCCCCCCEEeCCCC
Confidence 344444 55555555555556666666666666666666655555555555555554 3444444444
No 9
>PRK09718 hypothetical protein; Validated
Probab=98.59 E-value=3.6e-08 Score=90.13 Aligned_cols=67 Identities=15% Similarity=0.155 Sum_probs=40.1
Q ss_pred CCccCCC-CCceecCCccccceeccceeccccccCcccCCccccCCcc---ccccccCccccCceeecccc
Q 030917 102 RGEFGIG-SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKF---NGAYLEKAVAYKANFTGTKR 168 (169)
Q Consensus 102 ~~f~g~~-~g~dFs~a~L~~a~F~~a~L~~anFs~AdL~~a~Fs~a~L---~gA~f~~a~l~~a~f~gAdL 168 (169)
.+|.+.. .++.|.+|.|.+++|.+++|++++|++++|.+++|++|+| +++.|.+|+|.+++|.+|+|
T Consensus 160 AdFSgA~Lk~V~FsdCnL~yAnFsgAnLskA~F~gCDLseAdFSEcdLS~aKka~F~~cDLt~AdF~qT~L 230 (512)
T PRK09718 160 VDFSKNILDTVDFSQSQLTHSNFRECQIRNSNFDNCYLYASHFTRAEFLSAKEISFIKSNLTAVMFDHVRI 230 (512)
T ss_pred cccccCccCCcEEeeeEecccCCCCCcCCCCEEeCccCCcCCccCCccCCCCCCEEeCCCCCCCCcCCCcC
Confidence 3444444 5556666666666666666666666666666666666665 45555555555555555444
No 10
>PF13576 Pentapeptide_3: Pentapeptide repeats (9 copies); PDB: 2BM6_A 2BM7_C 2BM5_A 2BM4_A.
Probab=97.53 E-value=2.7e-05 Score=49.73 Aligned_cols=28 Identities=32% Similarity=0.604 Sum_probs=8.1
Q ss_pred eeccceeccc-cccCcccCCccccCCccc
Q 030917 122 VHVKENFRRA-NFTSADMRESDFSGSKFN 149 (169)
Q Consensus 122 ~F~~a~L~~a-nFs~AdL~~a~Fs~a~L~ 149 (169)
+|.++.+++. +|.++.+.+++|.++.|.
T Consensus 11 ~F~~~~F~~~~~F~~~~F~~a~F~~a~F~ 39 (48)
T PF13576_consen 11 DFSGATFEGSASFSNATFGNADFSGATFN 39 (48)
T ss_dssp B-TT-EEES-E-EES-EEES-B-TTEEEE
T ss_pred EECCCEEcceEEecccEEcccEECCCEEc
Confidence 3333333333 333333333344444433
No 11
>PRK09716 hypothetical protein; Provisional
Probab=45.49 E-value=9.6 Score=33.07 Aligned_cols=50 Identities=20% Similarity=0.286 Sum_probs=33.4
Q ss_pred ccccceeccceeccccccCcccCCccccCCccccccccCccccCceeecc
Q 030917 117 DLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGT 166 (169)
Q Consensus 117 ~L~~a~F~~a~L~~anFs~AdL~~a~Fs~a~L~gA~f~~a~l~~a~f~gA 166 (169)
||+.-++++.+|..-+|++-.|.++.+.--.|...+|+++++..++|...
T Consensus 152 dlssldlrni~l~~ydftdkhman~ilnpfkl~~t~ftnanmfqvnfvss 201 (395)
T PRK09716 152 DLSSLDLRNVDLDYYDFTDKHMANTILNPFKLNSTNFTNANMFQVNFVSS 201 (395)
T ss_pred ecccccccccceeecccchHhHHhhccCceecCCCCCcccceEEEEEEec
Confidence 44445555556666666666666666666677777788888877777643
No 12
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=25.26 E-value=25 Score=34.33 Aligned_cols=39 Identities=13% Similarity=0.233 Sum_probs=17.8
Q ss_pred ecCCccccceeccceeccccccCcccCCccccCCccccc
Q 030917 113 FGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGA 151 (169)
Q Consensus 113 Fs~a~L~~a~F~~a~L~~anFs~AdL~~a~Fs~a~L~gA 151 (169)
|.+..++...|.++-|+.|.|++..-.+..|+.|++...
T Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~ 554 (742)
T TIGR01299 516 FIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDT 554 (742)
T ss_pred hhcccccccccccccccccceeeccccchhhhccchhhh
Confidence 334444444445554555555544444434444444333
No 13
>PLN00077 photosystem II reaction centre W protein; Provisional
Probab=20.39 E-value=2.2e+02 Score=22.02 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=15.8
Q ss_pred CCCCCCcccccCCC--CceEEEeeccCCC
Q 030917 19 SSSKGPYQLHALSK--PLWVACQISSKTE 45 (169)
Q Consensus 19 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 45 (169)
..+++--.+|+++. + +|.|......+
T Consensus 17 a~s~pvlGLP~l~~~~~-~v~Cs~e~k~~ 44 (128)
T PLN00077 17 AAARPVLGLPQLRARSE-RVRCSYEKKAA 44 (128)
T ss_pred hhcCcccCchhhhccCC-ceEEecccCcc
Confidence 33333346666663 5 89998776554
Done!