Query 030917
Match_columns 169
No_of_seqs 222 out of 1256
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 10:04:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030917.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030917hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3n90_A P15, thylakoid lumenal 99.4 4.4E-13 1.5E-17 102.8 5.4 59 109-167 29-87 (152)
2 3n90_A P15, thylakoid lumenal 99.3 5.6E-13 1.9E-17 102.2 3.2 46 109-154 49-94 (152)
3 2f3l_A RFR-domain; beta helix, 99.3 1.9E-12 6.5E-17 102.7 4.4 35 109-143 60-94 (184)
4 2f3l_A RFR-domain; beta helix, 99.3 2.1E-12 7.1E-17 102.5 3.6 40 103-142 63-103 (184)
5 2bm5_A MFPA, RV3361C, pentapep 99.2 2.5E-12 8.7E-17 100.7 2.8 58 111-168 95-152 (186)
6 2xt2_A ALBG, MCBG-like protein 99.2 9.6E-12 3.3E-16 97.3 4.6 59 109-167 108-166 (200)
7 2xt2_A ALBG, MCBG-like protein 99.2 1.1E-11 3.7E-16 97.0 4.3 68 101-168 109-177 (200)
8 2w7z_A EFSQNR, pentapeptide re 99.1 1.5E-11 5E-16 98.2 3.6 47 118-164 142-188 (214)
9 2qyu_A Secreted effector prote 99.1 7.7E-11 2.6E-15 108.9 4.6 60 109-168 74-135 (627)
10 2qyu_A Secreted effector prote 99.0 9.4E-11 3.2E-15 108.3 3.2 25 142-166 97-121 (627)
No 1
>3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} SCOP: b.80.8.0
Probab=99.37 E-value=4.4e-13 Score=102.75 Aligned_cols=59 Identities=27% Similarity=0.334 Sum_probs=24.0
Q ss_pred CCceecCCccccceeccceeccccccCcccCCccccCCccccccccCccccCceeeccc
Q 030917 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGTK 167 (169)
Q Consensus 109 ~g~dFs~a~L~~a~F~~a~L~~anFs~AdL~~a~Fs~a~L~gA~f~~a~l~~a~f~gAd 167 (169)
.+++|.+++|++++|.+++|++++|.+++|++++|++|+|++|+|.+|+|.+++|++|+
T Consensus 29 ~~~~f~~~~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~ 87 (152)
T 3n90_A 29 IRQDFKTSILRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNAN 87 (152)
T ss_dssp TTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCB
T ss_pred CcCccCCCeeCCCEeCCCCCCCCCccccCcCCCEeCCCCcCCCCCCCCCcCCCCcCCCC
Confidence 33444444444444444444444444444444444444444433333333333333333
No 2
>3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} SCOP: b.80.8.0
Probab=99.32 E-value=5.6e-13 Score=102.16 Aligned_cols=46 Identities=26% Similarity=0.398 Sum_probs=19.0
Q ss_pred CCceecCCccccceeccceeccccccCcccCCccccCCcccccccc
Q 030917 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLE 154 (169)
Q Consensus 109 ~g~dFs~a~L~~a~F~~a~L~~anFs~AdL~~a~Fs~a~L~gA~f~ 154 (169)
.+++|.+++|.+++|.+++|++++|.+|+|++++|.+|+|++++|.
T Consensus 49 ~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~~~ 94 (152)
T 3n90_A 49 LGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEGATMM 94 (152)
T ss_dssp TTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCC
T ss_pred CCCCccccCcCCCEeCCCCcCCCCCCCCCcCCCCcCCCCCCCCEEc
Confidence 3333333344444444444444444444444444444444444433
No 3
>2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A
Probab=99.28 E-value=1.9e-12 Score=102.75 Aligned_cols=35 Identities=26% Similarity=0.450 Sum_probs=14.5
Q ss_pred CCceecCCccccceeccceeccccccCcccCCccc
Q 030917 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDF 143 (169)
Q Consensus 109 ~g~dFs~a~L~~a~F~~a~L~~anFs~AdL~~a~F 143 (169)
.+++|++++|++++|.+++|++++|++++|++++|
T Consensus 60 ~~~df~~~~L~~~~f~~~~l~~a~f~~a~L~~a~f 94 (184)
T 2f3l_A 60 IGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVF 94 (184)
T ss_dssp TTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEE
T ss_pred CCCcCCCCCcCCCEeccCccccCCcCCCCCcEeEE
Confidence 44444444444444444444444444444333333
No 4
>2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A
Probab=99.26 E-value=2.1e-12 Score=102.54 Aligned_cols=40 Identities=28% Similarity=0.352 Sum_probs=16.7
Q ss_pred CccCCC-CCceecCCccccceeccceeccccccCcccCCcc
Q 030917 103 GEFGIG-SAAQFGSADLRKAVHVKENFRRANFTSADMRESD 142 (169)
Q Consensus 103 ~f~g~~-~g~dFs~a~L~~a~F~~a~L~~anFs~AdL~~a~ 142 (169)
+|.+.+ .+++|.+++|.+++|.+++|++++|.+++|++++
T Consensus 63 df~~~~L~~~~f~~~~l~~a~f~~a~L~~a~f~~a~l~~a~ 103 (184)
T 2f3l_A 63 DFSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGAD 103 (184)
T ss_dssp BCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEESCBCTTCB
T ss_pred cCCCCCcCCCEeccCccccCCcCCCCCcEeEEeeeccCCCe
Confidence 444444 4444444444444444444444433333333333
No 5
>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A
Probab=99.23 E-value=2.5e-12 Score=100.74 Aligned_cols=58 Identities=24% Similarity=0.354 Sum_probs=26.0
Q ss_pred ceecCCccccceeccceeccccccCcccCCccccCCccccccccCccccCceeecccc
Q 030917 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGTKR 168 (169)
Q Consensus 111 ~dFs~a~L~~a~F~~a~L~~anFs~AdL~~a~Fs~a~L~gA~f~~a~l~~a~f~gAdL 168 (169)
++|.+++|++++|.+++|++++|.+|+|++++|++|+|++++|.+++|.+++|++|+|
T Consensus 95 a~f~~a~l~~a~f~~a~l~~a~f~~a~L~~a~f~~~~l~~a~f~~a~L~~adl~~a~l 152 (186)
T 2bm5_A 95 AVLGGNDLRGLNLTGCRLRETSLVDTDLRKCVLRGADLSGARTTGARLDDADLRGATV 152 (186)
T ss_dssp CBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBC
T ss_pred CccCCCccCCCeeccCEEecCccCCCccCCCCcCCCccCCCEecCCccCCcccCCCEe
Confidence 3334444444444444444444444444444444444444444444444444444443
No 6
>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A
Probab=99.20 E-value=9.6e-12 Score=97.31 Aligned_cols=59 Identities=25% Similarity=0.332 Sum_probs=26.5
Q ss_pred CCceecCCccccceeccceeccccccCcccCCccccCCccccccccCccccCceeeccc
Q 030917 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGTK 167 (169)
Q Consensus 109 ~g~dFs~a~L~~a~F~~a~L~~anFs~AdL~~a~Fs~a~L~gA~f~~a~l~~a~f~gAd 167 (169)
.+++|.+++|++++|.+++|++++|.+|+|++++|++|+|++++|.+++|.+++|++|+
T Consensus 108 ~~a~f~~a~l~~~~f~~~~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~ 166 (200)
T 2xt2_A 108 NDSLFYGLYLAGVKMVECRIHDANFTEADCEDADFTQSDLKGSTFHNTKLTGASFIDAV 166 (200)
T ss_dssp TTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCBCTTCBCTTCBCSSCBCTTCBCTTCB
T ss_pred cccEEccCccCCCEecCCEeecccCCCCccccCCccCcccCCCCccCCccccCCcCCCC
Confidence 44444444444444444444444444444444444444444444444444444444443
No 7
>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A
Probab=99.18 E-value=1.1e-11 Score=96.99 Aligned_cols=68 Identities=21% Similarity=0.345 Sum_probs=43.4
Q ss_pred cCCccCCC-CCceecCCccccceeccceeccccccCcccCCccccCCccccccccCccccCceeecccc
Q 030917 101 TRGEFGIG-SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGTKR 168 (169)
Q Consensus 101 ~~~f~g~~-~g~dFs~a~L~~a~F~~a~L~~anFs~AdL~~a~Fs~a~L~gA~f~~a~l~~a~f~gAdL 168 (169)
..+|.+.. .+++|.+++|.+++|.+++|++++|++++|++++|.+++|++|+|+++++.+++|++++|
T Consensus 109 ~a~f~~a~l~~~~f~~~~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~~~~~~~~l 177 (200)
T 2xt2_A 109 DSLFYGLYLAGVKMVECRIHDANFTEADCEDADFTQSDLKGSTFHNTKLTGASFIDAVNYHIDIFHNDI 177 (200)
T ss_dssp TCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCBCTTCBCTTCBCSSCBCTTCBCTTCBSCCCCTTSSBC
T ss_pred ccEEccCccCCCEecCCEeecccCCCCccccCCccCcccCCCCccCCccccCCcCCCCccccccccccc
Confidence 33555555 666666666666666666666666666666666666666666666666666665555554
No 8
>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis}
Probab=99.15 E-value=1.5e-11 Score=98.22 Aligned_cols=47 Identities=13% Similarity=0.261 Sum_probs=17.5
Q ss_pred cccceeccceeccccccCcccCCccccCCccccccccCccccCceee
Q 030917 118 LRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFT 164 (169)
Q Consensus 118 L~~a~F~~a~L~~anFs~AdL~~a~Fs~a~L~gA~f~~a~l~~a~f~ 164 (169)
|.+++|.+++|++++|.+++|++++|.+++|++++|++|++.+++|.
T Consensus 142 l~~a~f~~a~L~~a~f~~~~L~~a~f~~a~l~~~~l~~a~l~~~~~~ 188 (214)
T 2w7z_A 142 LVESEFFEVTWXXLLLEACDLTESNWLNTSLXGLDFSQNTFERLTFS 188 (214)
T ss_dssp CTTCBCTTCEEEEEEEESCBCTTCBCTTCCCTTCBCTTSBCSCCBCC
T ss_pred cCCCCccCCEEEEEEEEecccccCEecCCeeccCCcccCCcCceEcC
Confidence 33333333333333333333333333333333333333333333333
No 9
>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A
Probab=99.06 E-value=7.7e-11 Score=108.95 Aligned_cols=60 Identities=18% Similarity=0.321 Sum_probs=28.7
Q ss_pred CCceecCCccccceeccceeccccccCcccCCccccCCccccccccCcccc--Cceeecccc
Q 030917 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAY--KANFTGTKR 168 (169)
Q Consensus 109 ~g~dFs~a~L~~a~F~~a~L~~anFs~AdL~~a~Fs~a~L~gA~f~~a~l~--~a~f~gAdL 168 (169)
++++|.+++|++++|.+|+|++|+|++|+|++|+|++|+|++|+|.+|+|. +|+|++|+|
T Consensus 74 sgAnLs~AdLs~A~L~gAnLs~AnLsgA~L~~AnLsgAnLsgAnL~gA~L~~~gAnLsgAdL 135 (627)
T 2qyu_A 74 SNSKFTYSDISHLHFDECRFTYSTLSDVVCSNTKFSNSDMNEVFLQYSITTQQQPSFIDTTL 135 (627)
T ss_dssp TTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEESCBCTTCEECCCTTCCSCCEEEEEEC
T ss_pred CCCccCCCCCCCCccCCcccCCCchhhhccccceECCcCCCCcccCCccccCCCCeeCCCCC
Confidence 333334444444444444444445555444445555555555555554443 344555444
No 10
>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A
Probab=99.01 E-value=9.4e-11 Score=108.34 Aligned_cols=25 Identities=4% Similarity=-0.032 Sum_probs=9.4
Q ss_pred cccCCccccccccCccccCceeecc
Q 030917 142 DFSGSKFNGAYLEKAVAYKANFTGT 166 (169)
Q Consensus 142 ~Fs~a~L~gA~f~~a~l~~a~f~gA 166 (169)
+|++++|++|+|.+|+|.+|+|.+|
T Consensus 97 nLsgA~L~~AnLsgAnLsgAnL~gA 121 (627)
T 2qyu_A 97 TLSDVVCSNTKFSNSDMNEVFLQYS 121 (627)
T ss_dssp BCTTCBCTTCEEESCBCTTCEECCC
T ss_pred chhhhccccceECCcCCCCcccCCc
Confidence 3333333333333333333333333
Done!