Query 030918
Match_columns 169
No_of_seqs 122 out of 762
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 10:05:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030918.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030918hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v2d_O 50S ribosomal protein L 100.0 6.9E-55 2.4E-59 336.3 12.3 120 50-169 1-122 (122)
2 1whi_A Ribosomal protein L14; 100.0 9.6E-55 3.3E-59 335.5 11.7 120 50-169 1-122 (122)
3 3r8s_K 50S ribosomal protein L 100.0 3E-54 1E-58 332.8 10.6 119 50-168 1-122 (122)
4 3bbo_M Ribosomal protein L14; 100.0 4.4E-54 1.5E-58 331.5 11.0 119 50-169 1-121 (121)
5 1vq8_K 50S ribosomal protein L 100.0 1.1E-50 3.8E-55 316.5 10.8 117 49-169 10-132 (132)
6 3j21_J 50S ribosomal protein L 100.0 4.2E-50 1.4E-54 316.1 9.6 118 48-169 18-141 (141)
7 3u5e_V L17A, YL32, 60S ribosom 100.0 1.3E-49 4.6E-54 311.9 10.6 117 49-169 15-137 (137)
8 2qqr_A JMJC domain-containing 46.9 31 0.0011 25.8 4.9 41 79-132 5-45 (118)
9 1xe1_A Hypothetical protein PF 35.7 77 0.0026 23.5 5.5 51 51-107 60-113 (116)
10 2ftc_K 39S ribosomal protein L 30.9 64 0.0022 23.4 4.2 31 81-114 5-35 (98)
11 3h9w_A Diguanylate cyclase wit 30.6 53 0.0018 20.8 3.5 28 115-142 71-98 (115)
12 1v74_A Colicin D; colicin D - 26.1 71 0.0024 23.7 3.8 30 115-144 58-89 (107)
13 3r87_A Putative uncharacterize 23.8 1.7E+02 0.0058 19.9 5.4 64 77-156 67-131 (135)
14 3v2d_T 50S ribosomal protein L 23.4 1.2E+02 0.004 23.6 4.7 34 79-114 21-54 (146)
15 3r8s_P 50S ribosomal protein L 22.8 1E+02 0.0035 22.9 4.2 34 79-114 18-51 (114)
16 2xdp_A Lysine-specific demethy 22.8 33 0.0011 25.8 1.5 41 79-132 6-46 (123)
17 3f1p_B ARYL hydrocarbon recept 21.4 60 0.0021 20.8 2.5 28 115-142 79-107 (121)
18 3icy_A Sensor protein; sensory 20.4 1.1E+02 0.0039 18.7 3.6 29 114-142 81-109 (118)
19 3f1p_A Endothelial PAS domain- 20.3 57 0.0019 20.7 2.1 29 114-142 74-103 (117)
No 1
>3v2d_O 50S ribosomal protein L14; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_O 2jl6_O 2jl8_O 2v47_O 2v49_O 2wdi_O 2wdj_O 2wdl_O 2wdn_O 2wh2_O 2wh4_O 2wrj_O 2wrl_O 2wro_O 2wrr_O 2x9s_O 2x9u_O 2xg0_O 2xg2_O 2xqe_O ...
Probab=100.00 E-value=6.9e-55 Score=336.33 Aligned_cols=120 Identities=57% Similarity=0.858 Sum_probs=117.6
Q ss_pred hhccCceEEEeeCcCcceEEEEEeeCC--ccceecCcEEEEEEeeecCCCcccccceEEEEEEEeeecccCCCCceeeec
Q 030918 50 FIQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFD 127 (169)
Q Consensus 50 MIq~~T~L~VaDNSGak~v~cI~vl~~--~k~a~vGD~I~vsVKk~~p~~kvKKg~V~kAVIVRtKk~~~R~dG~~ikFd 127 (169)
|||.+|+|+|+|||||++++||++|++ +++|++||+|++|||++.|++++||||+++|||||||++++|+||++++||
T Consensus 1 MIq~~t~L~vaDNSGAk~v~cI~Vlg~~~rr~a~iGD~IvvsVK~~~p~~~vKkg~v~~AVIVRtkk~~rR~dG~~i~Fd 80 (122)
T 3v2d_O 1 MIQPQTYLEVADNTGARKIMCIRVLKGSNAKYATVGDVIVASVKEAIPRGAVKEGDVVKAVVVRTKKEIKRPDGSAIRFD 80 (122)
T ss_dssp CBCTTCEEEECBSSSEEEEEEEEEESTTTCCCBCTTCEEEEEEEEECSSSSSCTTCEEEEEEEECSSCEECTTSCEEEES
T ss_pred CCCCCCEEEEeeCCCCcEEEEEEEeCCCCCcccCCCCEEEEEEEEcCCCCccccCCEEEEEEEEeCCccCCCCCcEEEcC
Confidence 999999999999999999999999987 678999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEcCCCCcceeEEeccchhhhhcCCCchhhhcccccC
Q 030918 128 DNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA 169 (169)
Q Consensus 128 dNavVLln~k~~plGTRI~GPV~~Elr~kk~~KI~SLA~~i~ 169 (169)
|||+||+|++++|+|||||||||+|||+++|+||+|||++++
T Consensus 81 dNa~Vlin~~~~p~GTrI~GpVarElr~~~~~KI~SlA~~v~ 122 (122)
T 3v2d_O 81 DNAAVIINNQLEPRGTRVFGPVARELREKGFMKIVSLAPEVL 122 (122)
T ss_dssp SCEEEEECTTSCBSSSCBCSCBCTHHHHTTCHHHHHHSSCBC
T ss_pred CcEEEEECCCCCEeeeEEEccchHHHhhCCCchhhccccccC
Confidence 999999999999999999999999999999999999999975
No 2
>1whi_A Ribosomal protein L14; rRNA-binding; 1.50A {Geobacillus stearothermophilus} SCOP: b.39.1.1 PDB: 1giy_N 1ml5_n* 1c04_D 1yl3_N 2b66_O 2b9n_O 2b9p_O 487d_M
Probab=100.00 E-value=9.6e-55 Score=335.53 Aligned_cols=120 Identities=52% Similarity=0.793 Sum_probs=117.8
Q ss_pred hhccCceEEEeeCcCcceEEEEEeeCC--ccceecCcEEEEEEeeecCCCcccccceEEEEEEEeeecccCCCCceeeec
Q 030918 50 FIQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFD 127 (169)
Q Consensus 50 MIq~~T~L~VaDNSGak~v~cI~vl~~--~k~a~vGD~I~vsVKk~~p~~kvKKg~V~kAVIVRtKk~~~R~dG~~ikFd 127 (169)
|||.+|+|+|+|||||++++||+++++ +++|++||+|++|||++.|++++||||+++|||||||++++|+||++++||
T Consensus 1 MIq~~t~l~vaDNSGAk~v~cI~vlgg~~~r~a~iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtkk~~rR~dG~~i~Fd 80 (122)
T 1whi_A 1 MIQQESRLKVADNSGAREVLVIKVLGGSGRRYANIGDVVVATVKDATPGGVVKKGQVVKAVVVRTKRGVRRPDGSYIRFD 80 (122)
T ss_dssp CBCTTCEEEECBSSSEEEEEEEEECSSTTCCCBCTTCEEEEEEEEECTTSSSCTTCEEEEEEEECSSCEECTTSCEECCS
T ss_pred CCCccCEEEEeECCCCcEEEEEEEcCCCcccccccCeEEEEEEEEecCCCccccccEEEEEEEEecCceecCCCCEEEeC
Confidence 999999999999999999999999997 789999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEcCCCCcceeEEeccchhhhhcCCCchhhhcccccC
Q 030918 128 DNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA 169 (169)
Q Consensus 128 dNavVLln~k~~plGTRI~GPV~~Elr~kk~~KI~SLA~~i~ 169 (169)
|||+||+|++++|+|||||||||+|||+++|+||+|||++++
T Consensus 81 dNa~Vlin~~g~p~GTrI~GPVarElr~k~~~KI~SlA~~vl 122 (122)
T 1whi_A 81 ENACVIIRDDKSPRGTRIFGPVARELRDKDFMKIISLAPEVI 122 (122)
T ss_dssp SCEEEEECTTSCBSSSCBCSCBCTHHHHTTCHHHHHHCSCBC
T ss_pred CceEEEECCCCCEeeeEEEccchHHHhhcCCcchhhcccccC
Confidence 999999999999999999999999999999999999999985
No 3
>3r8s_K 50S ribosomal protein L14; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_K 3oat_K* 3oas_K* 3ofd_K 3ofc_K 3ofr_K* 3ofz_K* 3og0_K 3ofq_K 3r8t_K 3i1n_K 1p85_I 1p86_I 1vs8_K 1vs6_K 2aw4_K 2awb_K 1vt2_K 2i2v_K 2i2t_K* ...
Probab=100.00 E-value=3e-54 Score=332.79 Aligned_cols=119 Identities=54% Similarity=0.844 Sum_probs=116.5
Q ss_pred hhccCceEEEeeCcCcceEEEEEeeCC--ccceecCcEEEEEEeeecCCCcccccceEEEEEEEeeecccCCCCceeeec
Q 030918 50 FIQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFD 127 (169)
Q Consensus 50 MIq~~T~L~VaDNSGak~v~cI~vl~~--~k~a~vGD~I~vsVKk~~p~~kvKKg~V~kAVIVRtKk~~~R~dG~~ikFd 127 (169)
|||.+|+|+|+|||||++++||++|++ +++|++||+|++|||++.|++++||||+++|||||||++++|+||++++||
T Consensus 1 MIq~~t~L~vaDNSGAk~v~cI~Vlgg~~r~~a~iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtkk~~rR~dG~~i~Fd 80 (122)
T 3r8s_K 1 MIQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKAVVVRTKKGVRRPDGSVIRFD 80 (122)
T ss_dssp CBCTTCEEEECBTTSEEEEEEEEECSSSSCCCBCTTCEEEEEEEEECTTSSSCTTCEEEEEEEECSSCEECTTSCEEEES
T ss_pred CCCCCCEEEEccCCCCceEEEEEEeCCCCCCcccCCCEEEEEEEEcCCCCccccCCEEEEEEEEeCCcCCCCCCcEEEcC
Confidence 999999999999999999999999987 678999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEcCC-CCcceeEEeccchhhhhcCCCchhhhccccc
Q 030918 128 DNAVVLVNKA-GEPTGTRVFGPVPHELRRKKHVSILTLAEHL 168 (169)
Q Consensus 128 dNavVLln~k-~~plGTRI~GPV~~Elr~kk~~KI~SLA~~i 168 (169)
|||+||+|++ ++|+|||||||||+|||+++|+||+|||+++
T Consensus 81 dNa~Vlin~~~g~p~GTrI~GpVarElR~~~~~KI~SlA~~v 122 (122)
T 3r8s_K 81 GNACVLLNNNSEQPIGTRIFGPVTRELRSEKFMKIISLAPEV 122 (122)
T ss_dssp SCEEEEEETTTEEESCSCBCSCCCGGGGSGGGHHHHHSSSCC
T ss_pred CceEEEEeCCCCCEeeeEEEccccHHHhHcCCchhhccccCC
Confidence 9999999999 9999999999999999999999999999985
No 4
>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=4.4e-54 Score=331.46 Aligned_cols=119 Identities=45% Similarity=0.776 Sum_probs=116.7
Q ss_pred hhccCceEEEeeCcCcceEEEEEeeCC--ccceecCcEEEEEEeeecCCCcccccceEEEEEEEeeecccCCCCceeeec
Q 030918 50 FIQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFD 127 (169)
Q Consensus 50 MIq~~T~L~VaDNSGak~v~cI~vl~~--~k~a~vGD~I~vsVKk~~p~~kvKKg~V~kAVIVRtKk~~~R~dG~~ikFd 127 (169)
|||.+|+|+|+|||||++++||+++++ +++|++||+|++|||++.|++++||||+++|||||||++++|+||++++||
T Consensus 1 MIq~~t~l~vaDNSGAk~v~cI~Vlgg~~~r~a~iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtkk~~rR~dG~~i~Fd 80 (121)
T 3bbo_M 1 MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRAVVVRTCKELKRDNGMIIRYD 80 (121)
T ss_dssp CCCSSCEEEECSSSSEEEEEEEEECSSSCCCCCCTTCEEEEEEEEECSSSSSCSSCEEEEEEEECSSCEECTTSCEECCS
T ss_pred CCCccCEEEEeeCCCCcEEEEEEEcCCCCccccccCcEEEEEEEEccCCCccccCcEEEEEEEEecCccccCCCCEEEeC
Confidence 999999999999999999999999997 789999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEcCCCCcceeEEeccchhhhhcCCCchhhhcccccC
Q 030918 128 DNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA 169 (169)
Q Consensus 128 dNavVLln~k~~plGTRI~GPV~~Elr~kk~~KI~SLA~~i~ 169 (169)
|||+||+|++++|+|||||||||+|||+ +|+||+|||++++
T Consensus 81 dNa~Vlin~~g~p~GTrI~GPVarElr~-~~~KI~SlA~~vl 121 (121)
T 3bbo_M 81 DNAAVIIDQEGNPKGTRIFGAIARELRQ-KFAKIVSLAPEVL 121 (121)
T ss_dssp SCEEEECCTTSSCSSSCCCSCCCGGGTT-TCHHHHHHSSCCC
T ss_pred CceEEEECCCCCEeEeEEEcCcCHHHHh-cchHhhhccchhC
Confidence 9999999999999999999999999999 8999999999985
No 5
>1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.39.1.1 PDB: 1vq4_K* 1vq5_K* 1vq6_K* 1vq7_K* 1s72_K* 1vq9_K* 1vqk_K* 1vql_K* 1vqm_K* 1vqn_K* 1vqo_K* 1vqp_K* 1yhq_K* 1yi2_K* 1yij_K* 1yit_K* 1yj9_K* 1yjn_K* 1yjw_K* 2otj_K* ...
Probab=100.00 E-value=1.1e-50 Score=316.48 Aligned_cols=117 Identities=33% Similarity=0.549 Sum_probs=112.3
Q ss_pred hhhccCceEEEeeCcCcceEEEEEeeC--C--ccc--eecCcEEEEEEeeecCCCcccccceEEEEEEEeeecccCCCCc
Q 030918 49 TFIQMRTVLKVVDNSGAKTVMCIQPLK--G--RKV--ARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGS 122 (169)
Q Consensus 49 ~MIq~~T~L~VaDNSGak~v~cI~vl~--~--~k~--a~vGD~I~vsVKk~~p~~kvKKg~V~kAVIVRtKk~~~R~dG~ 122 (169)
.|||.+|+|+|+|||||++++||++++ + +++ |.+||+|++|||++.|+. |||+++|||||||++++|+||+
T Consensus 10 ~mIq~~t~l~vaDNSGAk~v~cI~V~g~~g~~~r~p~a~iGD~IvvsVKk~~p~~---kg~v~~AVIVRtkk~~rR~dG~ 86 (132)
T 1vq8_K 10 QGLEKGSLITCADNTGARELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTPEM---RRQVLEAVVVRQRKPIRRPDGT 86 (132)
T ss_dssp CCEETTCEEEECBSSSEEEEEEEEETTCCCCTTCCCEECTTCEEEEEEEEECTTT---TTCEEEEEEEECSSCEECTTSC
T ss_pred cccccCCEEEEeeCCCCcEEEEEEEeCccCcccccCCCccCcEEEEEEEecCCCC---CCcEEEEEEEEcCCCcCcCCCc
Confidence 599999999999999999999999998 4 456 999999999999999987 6999999999999999999999
Q ss_pred eeeecCceEEEEcCCCCcceeEEeccchhhhhcCCCchhhhcccccC
Q 030918 123 EVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA 169 (169)
Q Consensus 123 ~ikFddNavVLln~k~~plGTRI~GPV~~Elr~kk~~KI~SLA~~i~ 169 (169)
+++|||||+||+|++++|+|||||||||+|||+ +|+||+|||++++
T Consensus 87 ~i~FddNA~Vlin~~g~p~GTrI~GPVarElr~-~~~KI~SlA~~v~ 132 (132)
T 1vq8_K 87 RVKFEDNAAVIVDENEDPRGTELKGPIAREVAQ-RFGSVASAATMIV 132 (132)
T ss_dssp EEEESSCEEEEECTTSCBSSSCBCSEECHHHHH-HSHHHHTTCSEEC
T ss_pred EEEeCCceEEEECCCCCEeEEEEEcCcCHHHHh-cccHhhhcccccC
Confidence 999999999999999999999999999999999 7999999999975
No 6
>3j21_J 50S ribosomal protein L14P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=4.2e-50 Score=316.06 Aligned_cols=118 Identities=39% Similarity=0.610 Sum_probs=111.9
Q ss_pred hhhhccCceEEEeeCcCcceEEEEEeeC--C--cc--ceecCcEEEEEEeeecCCCcccccceEEEEEEEeeecccCCCC
Q 030918 48 RTFIQMRTVLKVVDNSGAKTVMCIQPLK--G--RK--VARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDG 121 (169)
Q Consensus 48 ~~MIq~~T~L~VaDNSGak~v~cI~vl~--~--~k--~a~vGD~I~vsVKk~~p~~kvKKg~V~kAVIVRtKk~~~R~dG 121 (169)
-.|||.+|+|+|+|||||++++||++++ + ++ +|.+||+|++|||++.|+. |||+++|||||||++++|+||
T Consensus 18 ~~mIq~~t~L~VaDNSGAk~v~cI~Vlg~kg~~~r~~~A~iGD~IvvsVKk~~p~~---kg~V~kAVIVRtkk~~rR~dG 94 (141)
T 3j21_J 18 TRALPVGAYLTVADNSGAKVIQIIGVVEYHGTRRRLASAGVGDMVVATVKKGRPDM---RHQVVRAVIIRQRKEYRRLDG 94 (141)
T ss_dssp CCCBCTTCEEEECSSSSEEEEEEEEETTCCCCTTCCCCBCSSCEEEEEEEEECTTT---TTCEEEEEEEECSSCEECTTS
T ss_pred cceeccCCEEEEccCCCCcEEEEEEEcCCCCcccccccCCcCCEEEEEEEecCCCC---cCceEEEEEEEeCCccCCCCC
Confidence 4699999999999999999999999997 3 33 5999999999999999998 599999999999999999999
Q ss_pred ceeeecCceEEEEcCCCCcceeEEeccchhhhhcCCCchhhhcccccC
Q 030918 122 SEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA 169 (169)
Q Consensus 122 ~~ikFddNavVLln~k~~plGTRI~GPV~~Elr~kk~~KI~SLA~~i~ 169 (169)
++++|||||+||+|++++|+|||||||||+|||+ +|+||+|||++||
T Consensus 95 s~i~FddNA~VLin~~g~p~GTRI~GPVarElr~-~~~KI~SlA~~iv 141 (141)
T 3j21_J 95 MRVKFEDNAAVIVTPEGVPRGTEIRGPVAREAAE-RWVRIGSIASIIV 141 (141)
T ss_dssp CEECCSSCEEEEBCTTSCBCSSCCCSEECHHHHH-HCHHHHHHCSEEC
T ss_pred cEEEcCCcEEEEECCCCCEeeeEEEccccHHHHh-hchHHhhcccccC
Confidence 9999999999999999999999999999999999 5999999999986
No 7
>3u5e_V L17A, YL32, 60S ribosomal protein L23-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_M 1s1i_R 3izs_M* 3j16_I 3o5h_U 3o58_U 3u5i_V 4b6a_V 2x7n_C 3jyw_R 2zkr_k 3iz5_M 3izr_M 4a17_J 4a1a_J 4a1c_J 4a1e_J
Probab=100.00 E-value=1.3e-49 Score=311.93 Aligned_cols=117 Identities=32% Similarity=0.439 Sum_probs=111.6
Q ss_pred hhhccCceEEEeeCcCcceEEEEEeeCC--c----cceecCcEEEEEEeeecCCCcccccceEEEEEEEeeecccCCCCc
Q 030918 49 TFIQMRTVLKVVDNSGAKTVMCIQPLKG--R----KVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGS 122 (169)
Q Consensus 49 ~MIq~~T~L~VaDNSGak~v~cI~vl~~--~----k~a~vGD~I~vsVKk~~p~~kvKKg~V~kAVIVRtKk~~~R~dG~ 122 (169)
.+||++|+|+|+|||||++++||+++++ + ++|.+||+|++|||++.|+. |||+++|||||||++++|+||+
T Consensus 15 ~gl~~~t~L~VaDNSGAk~v~cI~Vlg~~~r~~r~~~A~iGD~IvvsVK~~~p~~---k~~V~~AVIVRtkk~~rR~dG~ 91 (137)
T 3u5e_V 15 LGLPVGAIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMATVKKGKPEL---RKKVMPAIVVRQAKSWRRRDGV 91 (137)
T ss_dssp CCEETTCEEEECBSSSBCEEEEEEETTCCCCTTCCCEECTTCEEEEECSSBCTTT---TTSCEEEEEEECCSCEECTTSC
T ss_pred ccccCCCEEEEeeCCCCcEEEEEEEeCCCCcccccccCCcCCEEEEEEEECCCCC---CCcEEEEEEEEeccccCcCCCe
Confidence 4789999999999999999999999985 2 38999999999999999998 5899999999999999999999
Q ss_pred eeeecCceEEEEcCCCCcceeEEeccchhhhhcCCCchhhhcccccC
Q 030918 123 EVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA 169 (169)
Q Consensus 123 ~ikFddNavVLln~k~~plGTRI~GPV~~Elr~kk~~KI~SLA~~i~ 169 (169)
+++|||||+||+|++++|+|||||||||+|||++ |+||+|||++++
T Consensus 92 ~i~FddNA~Vlin~~g~p~GTrI~GPVarElr~~-~~KI~SlA~~vv 137 (137)
T 3u5e_V 92 FLYFEDNAGVIANPKGEMKGSAITGPVGKECADL-WPRVASNSGVVV 137 (137)
T ss_dssp EEEESSCEEEEBCTTCCBSSSCBCSCBCHHHHTT-CHHHHHTCSSBC
T ss_pred EEEcCCceEEEECCCCCEeeeEEEcchhHHHHHH-hhHHHhcccccC
Confidence 9999999999999999999999999999999996 999999999986
No 8
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=46.91 E-value=31 Score=25.81 Aligned_cols=41 Identities=24% Similarity=0.387 Sum_probs=29.3
Q ss_pred ceecCcEEEEEEeeecCCCcccccceEEEEEEEeeecccCCCCceeeecCceEE
Q 030918 79 VARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFDDNAVV 132 (169)
Q Consensus 79 ~a~vGD~I~vsVKk~~p~~kvKKg~V~kAVIVRtKk~~~R~dG~~ikFddNavV 132 (169)
..++||.|++. .+ -|.-++|.|++.+.+. ...+.|+||+.-
T Consensus 5 ~v~vGq~V~ak-----h~----ngryy~~~V~~~~~~~----~y~V~F~DgS~s 45 (118)
T 2qqr_A 5 SITAGQKVISK-----HK----NGRFYQCEVVRLTTET----FYEVNFDDGSFS 45 (118)
T ss_dssp CCCTTCEEEEE-----CT----TSSEEEEEEEEEEEEE----EEEEEETTSCEE
T ss_pred eeccCCEEEEE-----CC----CCCEEeEEEEEEeeEE----EEEEEcCCCCcc
Confidence 45789988842 12 3677889999987753 457999998864
No 9
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=35.74 E-value=77 Score=23.54 Aligned_cols=51 Identities=27% Similarity=0.355 Sum_probs=34.7
Q ss_pred hccCceEEEeeCc-CcceEEEEEeeCC--ccceecCcEEEEEEeeecCCCcccccceEEE
Q 030918 51 IQMRTVLKVVDNS-GAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHA 107 (169)
Q Consensus 51 Iq~~T~L~VaDNS-Gak~v~cI~vl~~--~k~a~vGD~I~vsVKk~~p~~kvKKg~V~kA 107 (169)
|..++.| |+- -.-.++-|+. .+ -..|..||-|-++++.... .++.|++.+.
T Consensus 60 LK~G~~V---Pg~~~vg~VkSIE~-~~e~v~eA~~GdnVai~Ikg~~~--~I~~GdVLyv 113 (116)
T 1xe1_A 60 IGVGFKV---KGPSGIGGIVRIER-NREKVEFAIAGDRIGISIEGKIG--KVKKGDVLEI 113 (116)
T ss_dssp EETTCEE---ECSSCEEEEEEEEE-TTEEESEEETTCEEEEEEESCCC--CCCTTCEEEE
T ss_pred EcCCCCc---CCCceEEEEEEEEE-CCcCcCCcCCCCEEEEEEECCcc--ccCCCcEEEE
Confidence 5567777 544 2344555653 33 3579999999999997554 6888988764
No 10
>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=30.85 E-value=64 Score=23.36 Aligned_cols=31 Identities=6% Similarity=0.109 Sum_probs=23.4
Q ss_pred ecCcEEEEEEeeecCCCcccccceEEEEEEEeee
Q 030918 81 RLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAM 114 (169)
Q Consensus 81 ~vGD~I~vsVKk~~p~~kvKKg~V~kAVIVRtKk 114 (169)
.+||+|.|.++-. ..+ ++=|.+.|+++..+.
T Consensus 5 ~~GDtv~V~~~i~--g~k-~R~q~F~GvvI~~~~ 35 (98)
T 2ftc_K 5 YVGSILRVTTADP--YAS-GKISQFLGICIQRSG 35 (98)
T ss_pred CCCCEEEEEEEEC--CCc-eEeeeEEEEEEEEEC
Confidence 5899999999755 222 345899999998764
No 11
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=30.62 E-value=53 Score=20.85 Aligned_cols=28 Identities=25% Similarity=0.252 Sum_probs=22.8
Q ss_pred cccCCCCceeeecCceEEEEcCCCCcce
Q 030918 115 QHGRFDGSEVRFDDNAVVLVNKAGEPTG 142 (169)
Q Consensus 115 ~~~R~dG~~ikFddNavVLln~k~~plG 142 (169)
...++||.+.-+...+.++.|++|+|.+
T Consensus 71 r~~~~dG~~~w~~~~~~~~~d~~G~~~~ 98 (115)
T 3h9w_A 71 RALHRDGHYVWIRDVVHVVRDDSGEVEA 98 (115)
T ss_dssp EEECTTSCEEEEEEEEEEEECTTSCEEE
T ss_pred EEEcCCCCEEEEEEEEEEEECCCCCEEE
Confidence 3557899988888899998998898753
No 12
>1v74_A Colicin D; colicin D - IMMD complex, cytotoxicity, transfer RNAse, protein-protein inhibition; HET: 1PE; 2.00A {Escherichia coli} SCOP: d.243.1.1 PDB: 1tfo_A 1tfk_A*
Probab=26.12 E-value=71 Score=23.66 Aligned_cols=30 Identities=30% Similarity=0.363 Sum_probs=23.5
Q ss_pred cccCCCCceeee--cCceEEEEcCCCCcceeE
Q 030918 115 QHGRFDGSEVRF--DDNAVVLVNKAGEPTGTR 144 (169)
Q Consensus 115 ~~~R~dG~~ikF--ddNavVLln~k~~plGTR 144 (169)
.+++..++.+.| ..|-+|+++.+|+.++==
T Consensus 58 TYR~~~dskVy~N~~T~~~Viid~~g~FvsGw 89 (107)
T 1v74_A 58 TYRREKGSKVYFNPNTMNVVIIKSNGEFLSGW 89 (107)
T ss_dssp BCTTSTTCEEEECTTTCEEEEECTTSCEEEEE
T ss_pred eeecCCCcEEEEeCCCCeEEEEcCCCCEEEEE
Confidence 355666899999 788999999999875543
No 13
>3r87_A Putative uncharacterized protein; unknown function; 1.05A {Photobacterium profundum}
Probab=23.85 E-value=1.7e+02 Score=19.91 Aligned_cols=64 Identities=11% Similarity=0.098 Sum_probs=35.3
Q ss_pred ccceecCcEEEEEEeeecCCCcccccceEEEEEEEeeecccCC-CCceeeecCceEEEEcCCCCcceeEEeccchhhhhc
Q 030918 77 RKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRF-DGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRR 155 (169)
Q Consensus 77 ~k~a~vGD~I~vsVKk~~p~~kvKKg~V~kAVIVRtKk~~~R~-dG~~ikFddNavVLln~k~~plGTRI~GPV~~Elr~ 155 (169)
++.+..||.|.+...-..... ..... .+...+. ||..+---+-..|.+|.++.|. |+|.|+++
T Consensus 67 ~~p~~~gd~v~v~t~v~~~~~----~s~~~------~~~i~~~~~g~~~a~~~~~~v~vd~~~r~~------~iP~~~~~ 130 (135)
T 3r87_A 67 QDGVEFAEICDIRTSFTLDGK----YKTLW------RQEVWRPGASRAAVIGDIEMVCLDKEKRLQ------PVPADILA 130 (135)
T ss_dssp CSCCCTTCEEEEEEEEEEETT----TEEEE------EEEEECTTCSSCSEEEEEEEEEECTTCCEE------CCCHHHHH
T ss_pred CCcccCCCEEEEEEEEEEeCC----EEEEE------EEEEEECCCCEEEEEEEEEEEEECCCCCEe------cCCHHHHH
Confidence 467889999988875332221 11111 1122222 5543333334556777665554 88999887
Q ss_pred C
Q 030918 156 K 156 (169)
Q Consensus 156 k 156 (169)
.
T Consensus 131 ~ 131 (135)
T 3r87_A 131 S 131 (135)
T ss_dssp H
T ss_pred H
Confidence 4
No 14
>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...
Probab=23.40 E-value=1.2e+02 Score=23.60 Aligned_cols=34 Identities=26% Similarity=0.202 Sum_probs=24.0
Q ss_pred ceecCcEEEEEEeeecCCCcccccceEEEEEEEeee
Q 030918 79 VARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAM 114 (169)
Q Consensus 79 ~a~vGD~I~vsVKk~~p~~kvKKg~V~kAVIVRtKk 114 (169)
.-.+||+|.|.++-...+ -.+=|.+.|+|+..+.
T Consensus 21 ~F~~GDtV~V~~~i~EG~--keRiQ~FeGvVI~rr~ 54 (146)
T 3v2d_T 21 EFRPGDTVRVSYKVKEGN--RTRIQDFEGIVIRIRR 54 (146)
T ss_dssp CCCTTCEEEEEEEEECSS--CEEEEEEEEEEEEEEC
T ss_pred CcCCCCEEEEEEEEccCC--ceeeeeEEEEEEEEEC
Confidence 357999999999853221 1234789999998774
No 15
>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...
Probab=22.81 E-value=1e+02 Score=22.87 Aligned_cols=34 Identities=26% Similarity=0.200 Sum_probs=23.6
Q ss_pred ceecCcEEEEEEeeecCCCcccccceEEEEEEEeee
Q 030918 79 VARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAM 114 (169)
Q Consensus 79 ~a~vGD~I~vsVKk~~p~~kvKKg~V~kAVIVRtKk 114 (169)
.-.+||+|.|.++-...+. .+=|.+.|+++..+.
T Consensus 18 ~f~~GDtv~V~~~i~EG~k--eRiQ~F~GvvI~~~~ 51 (114)
T 3r8s_P 18 SFRPGDTVEVKVWVVEGSK--KRLQAFEGVVIAIRN 51 (114)
T ss_dssp CCCTTCEEEEEEEEEETTE--EEEEEEEEEEEEEEC
T ss_pred ccCCCCEEEEEEEEecCCc--eeeeeEEEEEEEEEC
Confidence 3569999999987432211 224789999998774
No 16
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=22.79 E-value=33 Score=25.82 Aligned_cols=41 Identities=24% Similarity=0.302 Sum_probs=27.3
Q ss_pred ceecCcEEEEEEeeecCCCcccccceEEEEEEEeeecccCCCCceeeecCceEE
Q 030918 79 VARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFDDNAVV 132 (169)
Q Consensus 79 ~a~vGD~I~vsVKk~~p~~kvKKg~V~kAVIVRtKk~~~R~dG~~ikFddNavV 132 (169)
..++||.|.+ +.+ -|.-++|.|++.+.+. ...+.|+||+.-
T Consensus 6 ~v~vGq~V~a-----k~~----ngryy~~~V~~~~~~~----~y~V~F~DgS~s 46 (123)
T 2xdp_A 6 VISVGQTVIT-----KHR----NTRYYSCRVMAVTSQT----FYEVMFDDGSFS 46 (123)
T ss_dssp CCCTTCCCCC-----CCC----CCCCCCCEEEEEEEEE----EEEEEETTSCEE
T ss_pred ccccCCEEEE-----ECC----CCcEEeEEEEEEeeEE----EEEEEcCCCCcc
Confidence 3568887662 111 2667777788877643 357899999876
No 17
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=21.41 E-value=60 Score=20.78 Aligned_cols=28 Identities=7% Similarity=-0.004 Sum_probs=21.9
Q ss_pred cccCCCCceeeecCceEEEEcC-CCCcce
Q 030918 115 QHGRFDGSEVRFDDNAVVLVNK-AGEPTG 142 (169)
Q Consensus 115 ~~~R~dG~~ikFddNavVLln~-k~~plG 142 (169)
..+++||.++-++.++..+.|+ .++|.+
T Consensus 79 r~~~~dG~~~w~~~~~~~~~~~~~g~~~~ 107 (121)
T 3f1p_B 79 RFRSKNQEWLWMRTSSFTFQNPYSDEIEY 107 (121)
T ss_dssp EEECTTSCEEEEEEEEEEECCTTCCCCCE
T ss_pred EEEecCCCEEEEEEEEEEEECCCCCceeE
Confidence 3567899999999999988887 566643
No 18
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=20.38 E-value=1.1e+02 Score=18.66 Aligned_cols=29 Identities=14% Similarity=0.093 Sum_probs=22.5
Q ss_pred ecccCCCCceeeecCceEEEEcCCCCcce
Q 030918 114 MQHGRFDGSEVRFDDNAVVLVNKAGEPTG 142 (169)
Q Consensus 114 k~~~R~dG~~ikFddNavVLln~k~~plG 142 (169)
....++||...-+...+..+.+++|.+.|
T Consensus 81 ~r~~~~~g~~~w~~~~~~~~~~~~g~~~~ 109 (118)
T 3icy_A 81 YRIVTPEGKLHWIEDHMRSSFSDDGLFSG 109 (118)
T ss_dssp EEEECTTCCEEEEEEEEEEEECTTSCEEE
T ss_pred EEEECCCCCEEEEEEEEEEEECCCCCEEE
Confidence 34557899888888888888888888764
No 19
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=20.26 E-value=57 Score=20.68 Aligned_cols=29 Identities=17% Similarity=0.174 Sum_probs=22.3
Q ss_pred ecccCCCCceeeecCceEEEEcC-CCCcce
Q 030918 114 MQHGRFDGSEVRFDDNAVVLVNK-AGEPTG 142 (169)
Q Consensus 114 k~~~R~dG~~ikFddNavVLln~-k~~plG 142 (169)
...+++||.++-++.++..+.|+ +++|.+
T Consensus 74 ~r~~~~dG~~~w~~~~~~~~~d~~~g~~~~ 103 (117)
T 3f1p_A 74 YRMLAKHGGYVWLETQGTVIYNPRNLQPQC 103 (117)
T ss_dssp EEEECTTSSEEEEEEEEEEEEETTTTEEEE
T ss_pred EEEEecCCCEEEEEEeeEEEECCCCCCceE
Confidence 34567899999999999888887 666643
Done!