Query 030919
Match_columns 169
No_of_seqs 113 out of 1681
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 06:33:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030919.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030919hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0034 Ca2+/calmodulin-depend 100.0 9.3E-27 2E-31 163.5 16.4 165 1-167 1-186 (187)
2 COG5126 FRQ1 Ca2+-binding prot 99.9 9.9E-26 2.1E-30 153.5 15.3 135 20-159 10-158 (160)
3 KOG0027 Calmodulin and related 99.9 2E-21 4.4E-26 133.8 14.1 130 24-158 2-150 (151)
4 KOG0044 Ca2+ sensor (EF-Hand s 99.9 2.1E-21 4.6E-26 136.6 13.2 159 1-164 1-182 (193)
5 KOG0038 Ca2+-binding kinase in 99.9 4.3E-21 9.4E-26 126.7 12.6 160 1-162 1-182 (189)
6 PTZ00183 centrin; Provisional 99.8 2.1E-19 4.4E-24 124.3 15.5 134 22-160 9-157 (158)
7 PTZ00184 calmodulin; Provision 99.8 8.9E-19 1.9E-23 119.8 15.5 131 22-157 3-148 (149)
8 KOG0031 Myosin regulatory ligh 99.8 4.2E-18 9.2E-23 113.5 14.0 130 22-156 24-164 (171)
9 KOG0028 Ca2+-binding protein ( 99.8 5.2E-18 1.1E-22 113.8 13.4 134 20-158 23-171 (172)
10 KOG0030 Myosin essential light 99.7 1.2E-16 2.6E-21 104.9 11.0 129 23-157 4-151 (152)
11 KOG0037 Ca2+-binding protein, 99.6 8E-14 1.7E-18 98.4 12.8 117 30-158 57-189 (221)
12 PF13499 EF-hand_7: EF-hand do 99.5 3.9E-14 8.5E-19 84.0 7.9 66 89-155 1-66 (66)
13 cd05022 S-100A13 S-100A13: S-1 99.4 1.1E-12 2.5E-17 81.9 7.1 65 88-157 8-75 (89)
14 KOG0036 Predicted mitochondria 99.4 2E-11 4.3E-16 93.6 13.1 127 23-160 7-149 (463)
15 PLN02964 phosphatidylserine de 99.3 3.3E-11 7.1E-16 98.9 12.6 124 7-159 120-245 (644)
16 cd05027 S-100B S-100B: S-100B 99.3 1.7E-11 3.7E-16 76.6 8.1 65 88-157 8-79 (88)
17 KOG0044 Ca2+ sensor (EF-Hand s 99.3 8.8E-11 1.9E-15 83.0 10.7 97 56-157 26-128 (193)
18 cd05029 S-100A6 S-100A6: S-100 99.2 1.3E-10 2.7E-15 72.6 7.5 66 88-157 10-79 (88)
19 cd05031 S-100A10_like S-100A10 99.2 1.2E-10 2.6E-15 73.8 7.5 69 88-160 8-82 (94)
20 cd05026 S-100Z S-100Z: S-100Z 99.2 1.5E-10 3.3E-15 73.1 7.7 66 88-157 10-81 (93)
21 KOG4251 Calcium binding protei 99.2 1.6E-10 3.4E-15 83.3 8.7 158 3-160 113-312 (362)
22 KOG2562 Protein phosphatase 2 99.2 3.3E-10 7.1E-15 88.1 10.8 138 15-153 263-420 (493)
23 cd05025 S-100A1 S-100A1: S-100 99.2 2.8E-10 6.1E-15 71.8 7.9 66 88-157 9-80 (92)
24 KOG0377 Protein serine/threoni 99.1 1.6E-10 3.4E-15 89.5 7.2 127 30-160 464-618 (631)
25 KOG0027 Calmodulin and related 99.1 4.8E-10 1E-14 77.1 8.4 70 86-160 6-75 (151)
26 cd00052 EH Eps15 homology doma 99.1 2.2E-10 4.9E-15 67.7 5.8 62 91-159 2-63 (67)
27 cd00213 S-100 S-100: S-100 dom 99.1 5.6E-10 1.2E-14 69.8 7.5 67 88-158 8-80 (88)
28 PF13833 EF-hand_8: EF-hand do 99.1 4.2E-10 9.1E-15 63.8 5.9 52 101-157 1-53 (54)
29 smart00027 EH Eps15 homology d 99.1 1.1E-09 2.4E-14 69.6 8.2 64 87-157 9-72 (96)
30 PTZ00183 centrin; Provisional 99.1 5.1E-09 1.1E-13 72.1 11.8 99 57-160 18-121 (158)
31 KOG4223 Reticulocalbin, calume 99.1 6.3E-09 1.4E-13 77.8 12.4 129 27-159 74-230 (325)
32 cd00051 EFh EF-hand, calcium b 99.0 2.4E-09 5.2E-14 61.6 7.9 62 90-156 2-63 (63)
33 cd05023 S-100A11 S-100A11: S-1 99.0 2.1E-09 4.5E-14 67.3 7.9 66 88-157 9-80 (89)
34 COG5126 FRQ1 Ca2+-binding prot 99.0 1.4E-08 3E-13 69.7 12.3 107 47-162 14-125 (160)
35 cd00252 SPARC_EC SPARC_EC; ext 99.0 3.1E-09 6.7E-14 69.6 7.9 62 87-157 47-108 (116)
36 PTZ00184 calmodulin; Provision 98.9 2.3E-08 5.1E-13 67.9 11.4 98 57-159 12-114 (149)
37 KOG4223 Reticulocalbin, calume 98.9 4.1E-08 8.9E-13 73.6 11.9 148 5-159 91-271 (325)
38 PF13499 EF-hand_7: EF-hand do 98.9 3.1E-09 6.7E-14 62.7 4.5 65 31-114 1-66 (66)
39 KOG0037 Ca2+-binding protein, 98.9 8.9E-08 1.9E-12 68.1 12.4 136 5-155 71-218 (221)
40 cd05030 calgranulins Calgranul 98.9 1.1E-08 2.5E-13 63.9 6.8 66 88-157 8-79 (88)
41 KOG2643 Ca2+ binding protein, 98.9 1.7E-08 3.8E-13 78.2 8.8 138 4-157 299-453 (489)
42 PF14658 EF-hand_9: EF-hand do 98.8 4.9E-08 1.1E-12 56.8 6.4 62 92-157 2-64 (66)
43 KOG0040 Ca2+-binding actin-bun 98.7 3.5E-07 7.6E-12 79.9 13.5 135 14-157 2237-2398(2399)
44 KOG0031 Myosin regulatory ligh 98.7 1.3E-07 2.9E-12 63.7 8.5 75 88-163 32-135 (171)
45 smart00027 EH Eps15 homology d 98.7 2.2E-07 4.8E-12 59.0 7.8 70 23-116 3-72 (96)
46 KOG0028 Ca2+-binding protein ( 98.6 1E-06 2.2E-11 59.8 10.3 108 45-160 25-137 (172)
47 PF00036 EF-hand_1: EF hand; 98.6 7.5E-08 1.6E-12 47.2 3.6 28 90-117 2-29 (29)
48 cd05022 S-100A13 S-100A13: S-1 98.5 6.6E-07 1.4E-11 55.9 7.5 71 26-117 4-76 (89)
49 KOG0041 Predicted Ca2+-binding 98.5 4.8E-07 1E-11 63.6 7.1 66 88-158 99-164 (244)
50 PLN02964 phosphatidylserine de 98.5 4.7E-06 1E-10 69.1 12.4 89 23-133 172-273 (644)
51 cd05026 S-100Z S-100Z: S-100Z 98.4 2.2E-06 4.7E-11 54.1 8.2 74 27-117 7-82 (93)
52 cd05027 S-100B S-100B: S-100B 98.4 2.3E-06 5.1E-11 53.4 8.0 75 26-117 4-80 (88)
53 KOG0030 Myosin essential light 98.4 1.2E-06 2.7E-11 58.1 6.3 69 84-157 7-77 (152)
54 cd00252 SPARC_EC SPARC_EC; ext 98.4 1.7E-06 3.7E-11 56.7 7.0 66 24-115 42-107 (116)
55 cd05025 S-100A1 S-100A1: S-100 98.4 5.4E-06 1.2E-10 52.1 8.9 74 27-117 6-81 (92)
56 cd05024 S-100A10 S-100A10: A s 98.4 4.7E-06 1E-10 51.9 8.3 65 88-157 8-76 (91)
57 cd00213 S-100 S-100: S-100 dom 98.4 3.9E-06 8.5E-11 52.3 8.0 75 26-117 4-80 (88)
58 PF00036 EF-hand_1: EF hand; 98.3 7.3E-07 1.6E-11 43.7 3.0 27 131-157 2-28 (29)
59 PF13405 EF-hand_6: EF-hand do 98.3 1.2E-06 2.6E-11 43.6 3.6 29 89-117 1-30 (31)
60 KOG2643 Ca2+ binding protein, 98.3 1.3E-05 2.9E-10 62.6 10.7 118 31-156 234-383 (489)
61 cd05023 S-100A11 S-100A11: S-1 98.2 1.3E-05 2.8E-10 50.1 7.9 75 26-117 5-81 (89)
62 PRK12309 transaldolase/EF-hand 98.2 9.4E-06 2E-10 63.8 8.6 72 68-157 313-385 (391)
63 cd00052 EH Eps15 homology doma 98.2 4.1E-06 8.8E-11 49.1 5.0 61 33-117 2-62 (67)
64 cd05031 S-100A10_like S-100A10 98.2 2E-05 4.4E-10 49.7 8.4 73 28-117 6-80 (94)
65 PF12763 EF-hand_4: Cytoskelet 98.2 1.5E-05 3.3E-10 51.1 7.7 65 84-156 6-70 (104)
66 KOG0036 Predicted mitochondria 98.1 3.1E-05 6.8E-10 60.2 9.6 144 6-158 29-184 (463)
67 KOG0041 Predicted Ca2+-binding 98.1 3.6E-05 7.8E-10 54.4 8.8 108 23-153 92-199 (244)
68 cd05029 S-100A6 S-100A6: S-100 98.1 4.1E-05 8.9E-10 47.7 8.3 73 26-117 6-80 (88)
69 PF13202 EF-hand_5: EF hand; P 98.1 5.2E-06 1.1E-10 39.1 3.1 25 90-114 1-25 (25)
70 KOG0034 Ca2+/calmodulin-depend 98.1 3.9E-05 8.5E-10 54.4 8.8 100 45-157 25-132 (187)
71 PF13833 EF-hand_8: EF-hand do 98.0 1.7E-05 3.6E-10 44.6 5.3 48 68-116 5-53 (54)
72 KOG4065 Uncharacterized conser 98.0 4.2E-05 9.2E-10 49.2 7.3 64 91-154 70-142 (144)
73 KOG0751 Mitochondrial aspartat 98.0 0.00018 3.9E-09 57.3 11.7 92 23-117 29-137 (694)
74 cd00051 EFh EF-hand, calcium b 97.9 7E-05 1.5E-09 42.4 6.8 61 32-114 2-62 (63)
75 PF13202 EF-hand_5: EF hand; P 97.9 1.7E-05 3.7E-10 37.3 3.1 24 132-155 2-25 (25)
76 PF10591 SPARC_Ca_bdg: Secrete 97.8 7.4E-06 1.6E-10 53.5 1.4 63 85-154 51-113 (113)
77 KOG4666 Predicted phosphate ac 97.8 5.1E-05 1.1E-09 57.4 5.8 113 43-161 240-363 (412)
78 cd05030 calgranulins Calgranul 97.8 0.00022 4.8E-09 44.4 7.4 75 26-117 4-80 (88)
79 KOG0751 Mitochondrial aspartat 97.8 0.00021 4.6E-09 57.0 8.6 91 32-128 110-218 (694)
80 PF14788 EF-hand_10: EF hand; 97.7 0.00012 2.5E-09 40.4 5.1 48 104-156 1-48 (51)
81 PF09279 EF-hand_like: Phospho 97.7 0.00027 5.9E-09 43.4 6.7 69 90-159 2-71 (83)
82 KOG4251 Calcium binding protei 97.7 0.00021 4.5E-09 52.2 7.0 122 30-155 101-262 (362)
83 cd05024 S-100A10 S-100A10: A s 97.6 0.0011 2.4E-08 41.4 8.1 73 27-117 5-77 (91)
84 KOG2562 Protein phosphatase 2 97.5 0.00054 1.2E-08 54.2 8.0 116 31-151 226-373 (493)
85 PF13405 EF-hand_6: EF-hand do 97.4 0.00018 3.9E-09 35.5 2.9 26 132-157 3-28 (31)
86 KOG1707 Predicted Ras related/ 97.4 0.0015 3.2E-08 53.3 8.9 129 22-157 187-377 (625)
87 PF14658 EF-hand_9: EF-hand do 97.4 0.0011 2.5E-08 38.6 6.0 61 35-116 3-64 (66)
88 KOG0046 Ca2+-binding actin-bun 97.4 0.00087 1.9E-08 53.9 7.2 66 88-156 19-84 (627)
89 PRK12309 transaldolase/EF-hand 97.3 0.00059 1.3E-08 53.9 6.1 53 30-117 334-386 (391)
90 PF12763 EF-hand_4: Cytoskelet 97.2 0.00046 9.9E-09 44.3 3.1 68 24-116 4-71 (104)
91 smart00054 EFh EF-hand, calciu 97.0 0.0014 3E-08 30.6 3.4 27 90-116 2-28 (29)
92 PF14788 EF-hand_10: EF hand; 97.0 0.0045 9.7E-08 34.1 5.5 49 68-117 2-50 (51)
93 KOG0377 Protein serine/threoni 96.9 0.004 8.8E-08 49.3 6.5 60 58-117 549-616 (631)
94 smart00054 EFh EF-hand, calciu 96.8 0.002 4.3E-08 30.1 3.1 26 132-157 3-28 (29)
95 KOG0169 Phosphoinositide-speci 96.8 0.044 9.6E-07 46.2 12.5 131 25-160 131-277 (746)
96 KOG0040 Ca2+-binding actin-bun 96.6 0.006 1.3E-07 54.8 6.5 71 89-160 2254-2327(2399)
97 KOG1029 Endocytic adaptor prot 96.6 0.025 5.4E-07 47.9 9.7 61 88-155 195-255 (1118)
98 PF09069 EF-hand_3: EF-hand; 96.6 0.019 4.2E-07 35.7 6.9 71 87-160 2-78 (90)
99 KOG0038 Ca2+-binding kinase in 96.5 0.005 1.1E-07 41.6 4.2 64 90-157 73-136 (189)
100 PF10591 SPARC_Ca_bdg: Secrete 96.1 0.0064 1.4E-07 39.7 3.1 63 25-111 49-111 (113)
101 PLN02952 phosphoinositide phos 96.0 0.12 2.6E-06 43.2 10.6 91 68-159 17-112 (599)
102 KOG4578 Uncharacterized conser 96.0 0.0031 6.6E-08 48.0 1.4 72 85-160 330-401 (421)
103 KOG1265 Phospholipase C [Lipid 96.0 0.29 6.2E-06 42.4 12.8 114 39-157 157-299 (1189)
104 KOG0046 Ca2+-binding actin-bun 95.9 0.02 4.4E-07 46.3 5.6 59 21-80 10-86 (627)
105 KOG4347 GTPase-activating prot 95.6 0.092 2E-06 43.7 8.1 77 68-150 535-611 (671)
106 KOG2243 Ca2+ release channel ( 95.1 0.043 9.2E-07 49.5 5.2 63 92-160 4061-4123(5019)
107 KOG3555 Ca2+-binding proteogly 95.0 0.034 7.4E-07 42.8 3.8 65 87-160 249-313 (434)
108 KOG3866 DNA-binding protein of 94.8 0.068 1.5E-06 40.7 4.9 69 91-159 247-326 (442)
109 KOG4666 Predicted phosphate ac 94.2 0.14 3.1E-06 39.2 5.4 67 88-158 259-325 (412)
110 KOG1955 Ral-GTPase effector RA 93.5 0.26 5.7E-06 39.9 6.0 61 88-155 231-291 (737)
111 PF05042 Caleosin: Caleosin re 92.9 0.66 1.4E-05 32.5 6.6 67 89-160 8-127 (174)
112 KOG1955 Ral-GTPase effector RA 92.2 0.48 1E-05 38.5 5.9 70 23-116 224-293 (737)
113 KOG0035 Ca2+-binding actin-bun 90.5 1.7 3.7E-05 38.0 7.8 99 13-112 730-848 (890)
114 PF05517 p25-alpha: p25-alpha 90.4 1.6 3.4E-05 30.1 6.4 59 94-156 8-68 (154)
115 PF09279 EF-hand_like: Phospho 90.2 0.75 1.6E-05 27.9 4.3 32 86-117 35-70 (83)
116 KOG0035 Ca2+-binding actin-bun 89.2 1.4 3E-05 38.5 6.4 72 88-160 747-819 (890)
117 KOG0042 Glycerol-3-phosphate d 88.3 1.1 2.5E-05 37.1 5.0 63 90-157 595-657 (680)
118 KOG3866 DNA-binding protein of 87.6 1.3 2.7E-05 34.1 4.6 74 33-115 247-323 (442)
119 PLN02230 phosphoinositide phos 87.5 5 0.00011 33.9 8.4 74 85-159 26-104 (598)
120 KOG3555 Ca2+-binding proteogly 87.5 0.65 1.4E-05 36.1 3.1 82 31-117 212-311 (434)
121 KOG1707 Predicted Ras related/ 87.3 4.3 9.3E-05 34.0 7.7 31 130-160 316-346 (625)
122 PF05383 La: La domain; Inter 85.7 1.2 2.6E-05 25.6 2.9 45 17-61 2-46 (61)
123 PLN02222 phosphoinositide phos 85.4 5.4 0.00012 33.6 7.6 68 86-158 23-91 (581)
124 PLN02228 Phosphoinositide phos 85.2 5.2 0.00011 33.6 7.4 69 84-158 20-93 (567)
125 KOG4578 Uncharacterized conser 85.2 1.4 3E-05 34.1 3.8 62 34-116 337-398 (421)
126 KOG0169 Phosphoinositide-speci 85.1 3.4 7.3E-05 35.5 6.3 60 90-154 138-197 (746)
127 TIGR01848 PHA_reg_PhaR polyhyd 83.3 1.9 4.1E-05 27.6 3.2 66 95-164 10-84 (107)
128 KOG1029 Endocytic adaptor prot 83.2 3.1 6.7E-05 36.0 5.3 60 93-160 21-80 (1118)
129 cd08032 LARP_7 La RNA-binding 83.0 3.1 6.7E-05 25.5 4.0 49 11-59 4-52 (82)
130 PF14513 DAG_kinase_N: Diacylg 82.8 7.2 0.00016 26.4 6.1 83 1-102 1-83 (138)
131 KOG0039 Ferric reductase, NADH 82.5 3.9 8.4E-05 35.0 5.8 85 68-159 4-91 (646)
132 PLN02223 phosphoinositide phos 82.2 12 0.00026 31.3 8.2 74 85-159 13-94 (537)
133 KOG4347 GTPase-activating prot 80.8 6.6 0.00014 33.2 6.3 49 60-110 559-612 (671)
134 PF08414 NADPH_Ox: Respiratory 80.3 2.4 5.3E-05 26.8 2.9 26 28-55 28-53 (100)
135 PF08726 EFhand_Ca_insen: Ca2+ 80.2 2.5 5.4E-05 25.0 2.8 60 86-155 4-67 (69)
136 PF05042 Caleosin: Caleosin re 80.0 18 0.00039 25.4 10.7 68 85-154 93-163 (174)
137 cd08033 LARP_6 La RNA-binding 78.6 3.1 6.7E-05 25.1 2.9 46 14-59 2-47 (77)
138 KOG4065 Uncharacterized conser 78.2 5.6 0.00012 26.0 4.1 74 23-113 62-142 (144)
139 PF08976 DUF1880: Domain of un 76.7 2.7 5.9E-05 27.4 2.4 34 121-158 3-36 (118)
140 cd08029 LA_like_fungal La-moti 76.0 4.4 9.5E-05 24.4 3.1 45 15-59 3-47 (76)
141 PF00404 Dockerin_1: Dockerin 72.0 7.5 0.00016 17.2 2.5 17 98-114 1-17 (21)
142 smart00715 LA Domain in the RN 71.2 11 0.00024 22.9 4.1 47 13-60 4-50 (80)
143 PRK05849 hypothetical protein; 68.5 62 0.0013 28.6 9.3 131 13-155 371-513 (783)
144 cd08030 LA_like_plant La-motif 67.7 11 0.00024 23.5 3.6 48 14-61 3-50 (90)
145 cd08028 LARP_3 La RNA-binding 66.4 10 0.00022 23.2 3.2 46 14-60 6-51 (82)
146 PF09068 EF-hand_2: EF hand; 66.0 36 0.00079 22.6 7.9 68 88-155 41-123 (127)
147 PF08414 NADPH_Ox: Respiratory 63.8 35 0.00076 21.7 6.5 64 86-156 28-91 (100)
148 KOG0998 Synaptic vesicle prote 63.3 4.5 9.7E-05 35.7 1.7 64 86-156 281-344 (847)
149 cd07323 LAM LA motif RNA-bindi 61.4 15 0.00033 21.9 3.3 44 14-59 2-45 (75)
150 PF09068 EF-hand_2: EF hand; 61.0 12 0.00027 24.8 3.1 92 14-117 27-126 (127)
151 PF09069 EF-hand_3: EF-hand; 60.5 39 0.00084 21.1 5.3 71 30-116 3-75 (90)
152 PLN02952 phosphoinositide phos 60.4 29 0.00063 29.5 5.8 54 101-159 13-67 (599)
153 COG5394 Uncharacterized protei 59.8 15 0.00033 25.5 3.3 69 95-166 19-96 (193)
154 KOG2557 Uncharacterized conser 59.3 91 0.002 24.9 8.1 49 68-117 75-123 (427)
155 KOG1264 Phospholipase C [Lipid 59.0 1.1E+02 0.0023 27.5 8.7 141 17-157 130-293 (1267)
156 KOG2871 Uncharacterized conser 57.6 9.5 0.00021 30.2 2.4 34 84-117 305-338 (449)
157 KOG3449 60S acidic ribosomal p 57.1 51 0.0011 21.3 6.6 44 90-138 3-46 (112)
158 PF05517 p25-alpha: p25-alpha 56.0 64 0.0014 22.1 6.4 34 84-117 37-70 (154)
159 PF12174 RST: RCD1-SRO-TAF4 (R 55.7 40 0.00088 19.9 4.4 48 68-119 9-56 (70)
160 KOG4004 Matricellular protein 54.8 8 0.00017 27.9 1.4 59 90-155 189-248 (259)
161 cd03035 ArsC_Yffb Arsenate Red 53.2 46 0.001 21.1 4.7 55 103-165 34-91 (105)
162 PF07879 PHB_acc_N: PHB/PHA ac 51.7 12 0.00026 21.6 1.6 22 95-116 10-31 (64)
163 KOG0042 Glycerol-3-phosphate d 50.7 21 0.00045 30.1 3.4 72 24-117 587-658 (680)
164 COG5562 Phage envelope protein 50.2 10 0.00023 25.4 1.4 51 101-160 53-103 (137)
165 TIGR03573 WbuX N-acetyl sugar 49.6 47 0.001 26.0 5.2 44 101-155 299-342 (343)
166 cd07313 terB_like_2 tellurium 48.5 32 0.00069 21.4 3.4 52 101-156 12-64 (104)
167 PF11829 DUF3349: Protein of u 46.0 75 0.0016 20.1 4.9 63 68-131 20-82 (96)
168 KOG1954 Endocytosis/signaling 45.3 34 0.00074 27.5 3.7 55 90-152 446-500 (532)
169 PF04558 tRNA_synt_1c_R1: Glut 44.6 19 0.00041 25.1 2.0 52 84-137 81-132 (164)
170 PF06648 DUF1160: Protein of u 44.6 91 0.002 20.6 5.7 49 82-133 31-79 (122)
171 PTZ00373 60S Acidic ribosomal 43.8 90 0.002 20.3 5.3 38 92-130 7-44 (112)
172 KOG4286 Dystrophin-like protei 43.7 1.3E+02 0.0029 26.5 7.0 92 60-160 474-583 (966)
173 cd08031 LARP_4_5_like La RNA-b 43.5 41 0.0009 20.1 3.1 43 15-59 3-45 (75)
174 COG4359 Uncharacterized conser 42.8 41 0.00089 24.2 3.4 55 96-160 35-90 (220)
175 KOG2243 Ca2+ release channel ( 42.7 33 0.00071 32.6 3.5 21 35-55 4062-4082(5019)
176 cd08034 LARP_1_2 La RNA-bindin 42.6 47 0.001 19.8 3.2 43 15-59 3-45 (73)
177 cd02977 ArsC_family Arsenate R 42.2 76 0.0016 19.8 4.5 59 102-166 33-94 (105)
178 PF09336 Vps4_C: Vps4 C termin 42.2 59 0.0013 18.6 3.5 31 8-38 30-60 (62)
179 KOG3442 Uncharacterized conser 41.8 68 0.0015 21.3 4.1 42 101-144 52-93 (132)
180 PF12207 DUF3600: Domain of un 40.7 1.2E+02 0.0025 20.9 5.2 41 15-55 31-77 (162)
181 PLN02228 Phosphoinositide phos 40.3 1.6E+02 0.0034 25.1 7.0 60 57-116 25-92 (567)
182 cd08035 LARP_4 La RNA-binding 38.7 48 0.001 19.9 2.9 43 15-59 3-45 (75)
183 TIGR00988 hip integration host 38.5 43 0.00093 20.6 2.8 45 106-151 2-48 (94)
184 PF03979 Sigma70_r1_1: Sigma-7 38.5 49 0.0011 19.9 3.0 30 101-133 18-47 (82)
185 PF02864 STAT_bind: STAT prote 37.4 82 0.0018 23.7 4.5 51 103-153 177-231 (254)
186 PF14513 DAG_kinase_N: Diacylg 37.1 98 0.0021 21.0 4.5 36 101-140 45-80 (138)
187 PF09373 PMBR: Pseudomurein-bi 37.1 44 0.00095 16.3 2.2 16 102-117 2-17 (33)
188 cd05833 Ribosomal_P2 Ribosomal 36.9 1.2E+02 0.0025 19.6 5.2 53 92-154 5-57 (109)
189 PF04783 DUF630: Protein of un 36.9 22 0.00047 20.3 1.2 19 1-19 1-19 (60)
190 KOG1855 Predicted RNA-binding 35.2 45 0.00097 27.1 3.0 48 8-55 136-183 (484)
191 KOG3010 Methyltransferase [Gen 34.2 2E+02 0.0043 21.7 6.0 54 2-55 41-94 (261)
192 PRK10026 arsenate reductase; P 33.5 1.4E+02 0.003 20.3 4.8 59 103-165 37-95 (141)
193 cd07978 TAF13 The TATA Binding 32.8 1.3E+02 0.0027 18.8 4.8 21 141-161 50-70 (92)
194 KOG0506 Glutaminase (contains 32.4 1.6E+02 0.0035 24.5 5.6 69 90-160 88-161 (622)
195 PF07308 DUF1456: Protein of u 32.0 1.1E+02 0.0024 17.9 5.0 21 109-130 18-38 (68)
196 PF13608 Potyvirid-P3: Protein 31.8 74 0.0016 26.1 3.8 38 25-63 284-326 (445)
197 cd06403 PB1_Par6 The PB1 domai 31.3 13 0.00029 22.5 -0.3 65 94-166 11-77 (80)
198 PF11116 DUF2624: Protein of u 30.9 1.3E+02 0.0029 18.5 5.8 26 104-130 14-39 (85)
199 cd08037 LARP_1 La RNA-binding 30.5 82 0.0018 18.8 2.9 43 15-59 3-45 (73)
200 PF09873 DUF2100: Uncharacteri 30.0 1.7E+02 0.0037 21.3 4.9 39 97-135 34-83 (215)
201 PF05099 TerB: Tellurite resis 29.7 34 0.00074 22.5 1.4 15 101-115 36-50 (140)
202 KOG0998 Synaptic vesicle prote 29.6 37 0.00081 30.2 1.9 63 88-157 11-73 (847)
203 cd08332 CARD_CASP2 Caspase act 28.6 1.5E+02 0.0032 18.3 4.5 49 101-159 31-79 (90)
204 cd08330 CARD_ASC_NALP1 Caspase 28.4 1.4E+02 0.0031 18.0 4.6 49 101-159 26-74 (82)
205 smart00549 TAFH TAF homology. 28.3 1.4E+02 0.0031 18.6 3.8 15 143-157 37-51 (92)
206 PRK13344 spxA transcriptional 27.9 1.8E+02 0.0038 19.3 4.6 59 103-165 35-93 (132)
207 KOG2301 Voltage-gated Ca2+ cha 27.4 32 0.00068 32.8 1.2 90 68-161 1395-1488(1592)
208 PF01023 S_100: S-100/ICaBP ty 27.3 1E+02 0.0023 16.1 3.3 29 89-117 7-37 (44)
209 cd08038 LARP_2 La RNA-binding 27.3 1.1E+02 0.0024 18.2 3.1 43 15-59 3-45 (73)
210 PF07553 Lipoprotein_Ltp: Host 26.5 1.2E+02 0.0025 16.4 3.2 30 102-131 16-45 (48)
211 PF08461 HTH_12: Ribonuclease 26.1 1.1E+02 0.0024 17.6 3.0 37 101-142 10-46 (66)
212 PF00690 Cation_ATPase_N: Cati 25.6 1.4E+02 0.003 17.0 3.4 31 90-121 6-36 (69)
213 KOG4301 Beta-dystrobrevin [Cyt 25.4 1.2E+02 0.0026 24.0 3.8 59 92-156 114-172 (434)
214 cd08326 CARD_CASP9 Caspase act 25.0 1.7E+02 0.0037 17.8 4.6 49 101-159 27-75 (84)
215 PRK14981 DNA-directed RNA poly 24.9 1.8E+02 0.0039 18.8 4.1 27 106-133 80-106 (112)
216 PRK09071 hypothetical protein; 24.8 2.4E+02 0.0051 22.1 5.4 63 69-134 3-67 (323)
217 PF12091 DUF3567: Protein of u 24.4 1.1E+02 0.0023 18.9 2.7 40 91-130 26-70 (85)
218 cd03034 ArsC_ArsC Arsenate Red 24.4 2E+02 0.0043 18.3 4.7 56 103-165 34-92 (112)
219 TIGR01639 P_fal_TIGR01639 Plas 23.7 1.5E+02 0.0033 16.8 4.4 27 104-131 9-35 (61)
220 PF13075 DUF3939: Protein of u 23.6 49 0.0011 22.4 1.2 49 103-160 8-56 (140)
221 PF12486 DUF3702: ImpA domain 23.5 74 0.0016 21.8 2.1 29 27-55 66-94 (148)
222 PF09435 DUF2015: Fungal prote 23.5 1.8E+02 0.0039 19.4 3.9 37 10-46 87-123 (128)
223 PLN00138 large subunit ribosom 23.2 2.2E+02 0.0048 18.5 5.2 50 94-153 7-56 (113)
224 PLN02222 phosphoinositide phos 23.1 3.8E+02 0.0082 23.0 6.5 11 45-55 38-48 (581)
225 PF11363 DUF3164: Protein of u 22.9 1.1E+02 0.0023 22.1 2.9 31 85-115 116-146 (195)
226 PF12631 GTPase_Cys_C: Catalyt 22.8 38 0.00083 19.9 0.6 45 90-138 25-72 (73)
227 PF07492 Trehalase_Ca-bi: Neut 22.7 21 0.00045 17.3 -0.5 17 134-150 4-20 (30)
228 PF02269 TFIID-18kDa: Transcri 22.5 1.9E+02 0.004 18.0 3.7 35 128-162 37-71 (93)
229 TIGR02787 codY_Gpos GTP-sensin 22.4 1.7E+02 0.0037 22.0 3.9 39 16-55 169-207 (251)
230 cd06404 PB1_aPKC PB1 domain is 22.3 2E+02 0.0042 17.7 3.6 22 85-106 56-77 (83)
231 cd03032 ArsC_Spx Arsenate Redu 22.1 2.2E+02 0.0048 18.1 5.2 59 103-165 35-93 (115)
232 PRK00819 RNA 2'-phosphotransfe 21.9 1.9E+02 0.0042 20.4 4.1 32 98-130 27-58 (179)
233 TIGR01446 DnaD_dom DnaD and ph 21.0 1.8E+02 0.0039 16.6 4.6 42 94-135 2-43 (73)
234 TIGR00014 arsC arsenate reduct 20.9 2.4E+02 0.0052 18.0 4.7 56 103-165 34-93 (114)
235 PF10437 Lip_prot_lig_C: Bacte 20.8 2E+02 0.0044 17.2 3.9 43 106-155 43-86 (86)
236 cd04411 Ribosomal_P1_P2_L12p R 20.4 2.5E+02 0.0054 18.0 5.6 42 105-156 17-58 (105)
No 1
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.95 E-value=9.3e-27 Score=163.55 Aligned_cols=165 Identities=38% Similarity=0.645 Sum_probs=146.2
Q ss_pred CCCccCCCCH-HhHHHHHHHhccc----CCHHHHHHHHHHHhhhcCC-CCCCcCHHHhcChhH------HHHHHHHhcc-
Q 030919 1 MGNASSMLTQ-YDIEEVQQHCNHA----FSQQEIVSLYERFCQLDRN-NGGFISAEEFLSVPE------FARLLRMVDG- 67 (169)
Q Consensus 1 mg~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~F~~~D~~-~~g~l~~~el~~~~~------~~~~~~~~~~- 67 (169)
||+.+|++.. ++...++.. +. |+.+++.+++.+|+.+|++ ++|+++.+||..+|+ ..+|++.++.
T Consensus 1 Mg~~~s~~~~~~~~~~~~~~--~~~~~~fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~~~~Np~~~rI~~~f~~~ 78 (187)
T KOG0034|consen 1 MGNLSSTLLSDEDLEELQMY--TGDPTQFSANEIERLYERFKKLDRNNGDGYLTKEEFLSIPELALNPLADRIIDRFDTD 78 (187)
T ss_pred CCcccccccchhhhHHHHhc--cCCCcccCHHHHHHHHHHHHHhccccccCccCHHHHHHHHHHhcCcHHHHHHHHHhcc
Confidence 9999998654 666666666 45 9999999999999999999 999999999999954 4488888886
Q ss_pred -----CCHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhhCCCCC--HHHHHHHHHHHHHhhCC
Q 030919 68 -----LNFKEFVAFLSAFSPHATLHQKIEFIFKVYDSDGNGKVTFTDMLDVLRDLTGTFIS--EKQREQVLTDVLDEAGY 140 (169)
Q Consensus 68 -----i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~d~ 140 (169)
|+|++|+..+..+.+....+++++.+|++||.+++|.|+++|+..++..+.+...+ ++.++++++.++.++|.
T Consensus 79 ~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~ 158 (187)
T KOG0034|consen 79 GNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADT 158 (187)
T ss_pred CCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCC
Confidence 99999999999999888888999999999999999999999999999998777777 89999999999999999
Q ss_pred CCCCcccHHHHHHHhcccCC-ceeeecc
Q 030919 141 TKDSLMILSDFVKILGNSGL-KMEVEVP 167 (169)
Q Consensus 141 ~~dg~i~~~eF~~~l~~~~~-~~~~~~~ 167 (169)
++||+|+++||.+++.+.|. ...+.+|
T Consensus 159 d~DG~IsfeEf~~~v~~~P~~~~~m~~~ 186 (187)
T KOG0034|consen 159 DGDGKISFEEFCKVVEKQPDLLEKMTIR 186 (187)
T ss_pred CCCCcCcHHHHHHHHHcCccHHHHcCCC
Confidence 99999999999999999955 4444443
No 2
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.94 E-value=9.9e-26 Score=153.55 Aligned_cols=135 Identities=24% Similarity=0.456 Sum_probs=125.7
Q ss_pred hcccCCHHHHHHHHHHHhhhcCCCCCCcCHHHhcCh----------hHHHHHHHHhc---c-CCHHHHHHHHHhhCCCCC
Q 030919 20 CNHAFSQQEIVSLYERFCQLDRNNGGFISAEEFLSV----------PEFARLLRMVD---G-LNFKEFVAFLSAFSPHAT 85 (169)
Q Consensus 20 ~~~~~~~~~~~~~~~~F~~~D~~~~g~l~~~el~~~----------~~~~~~~~~~~---~-i~~~ef~~~~~~~~~~~~ 85 (169)
..++++.+++++++++|..+|++++|+|+..+|..+ +++.++++.++ . |+|.+|+.++.....+..
T Consensus 10 ~~~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~~~~~idf~~Fl~~ms~~~~~~~ 89 (160)
T COG5126 10 TFTQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDAGNETVDFPEFLTVMSVKLKRGD 89 (160)
T ss_pred hcccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccCCCCccCHHHHHHHHHHHhccCC
Confidence 347799999999999999999999999999999998 46779999999 3 999999999999888889
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhcccC
Q 030919 86 LHQKIEFIFKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILGNSG 159 (169)
Q Consensus 86 ~~~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~ 159 (169)
.++++.++|+.||.+++|+|+..+++.+++.+ |..+++++++.+ ++.+|.+++|.|+|++|++.+...+
T Consensus 90 ~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~l-ge~~~deev~~l----l~~~d~d~dG~i~~~eF~~~~~~~~ 158 (160)
T COG5126 90 KEEELREAFKLFDKDHDGYISIGELRRVLKSL-GERLSDEEVEKL----LKEYDEDGDGEIDYEEFKKLIKDSP 158 (160)
T ss_pred cHHHHHHHHHHhCCCCCceecHHHHHHHHHhh-cccCCHHHHHHH----HHhcCCCCCceEeHHHHHHHHhccC
Confidence 99999999999999999999999999999998 999999997777 9999999999999999999887665
No 3
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.88 E-value=2e-21 Score=133.81 Aligned_cols=130 Identities=26% Similarity=0.536 Sum_probs=115.6
Q ss_pred CCHHHHHHHHHHHhhhcCCCCCCcCHHHhcCh----------hHHHHHHHHhcc-----CCHHHHHHHHHhhCCCCC---
Q 030919 24 FSQQEIVSLYERFCQLDRNNGGFISAEEFLSV----------PEFARLLRMVDG-----LNFKEFVAFLSAFSPHAT--- 85 (169)
Q Consensus 24 ~~~~~~~~~~~~F~~~D~~~~g~l~~~el~~~----------~~~~~~~~~~~~-----i~~~ef~~~~~~~~~~~~--- 85 (169)
++..++.+++.+|+.+|.+++|+|+..+|..+ .++..++..++. |++.+|+.++........
T Consensus 2 ~~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~ 81 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEE 81 (151)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccccccc
Confidence 57788999999999999999999999999988 367788899885 999999999987654333
Q ss_pred -HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhccc
Q 030919 86 -LHQKIEFIFKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILGNS 158 (169)
Q Consensus 86 -~~~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~ 158 (169)
..+.++.+|+.||.+++|+||..||++++..+ |...+.++++.+ ++.+|.|+||.|+|++|+.++...
T Consensus 82 ~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~l-g~~~~~~e~~~m----i~~~d~d~dg~i~f~ef~~~m~~~ 150 (151)
T KOG0027|consen 82 ASSEELKEAFRVFDKDGDGFISASELKKVLTSL-GEKLTDEECKEM----IREVDVDGDGKVNFEEFVKMMSGK 150 (151)
T ss_pred ccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHh-CCcCCHHHHHHH----HHhcCCCCCCeEeHHHHHHHHhcC
Confidence 34589999999999999999999999999998 999999997777 999999999999999999998764
No 4
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.88 E-value=2.1e-21 Score=136.62 Aligned_cols=159 Identities=28% Similarity=0.480 Sum_probs=135.0
Q ss_pred CCCc-cCCCCHHhHHHHHHHhcccCCHHHHHHHHHHHhhhcCCCCCCcCHHHhcCh-----h------HHHHHHHHhcc-
Q 030919 1 MGNA-SSMLTQYDIEEVQQHCNHAFSQQEIVSLYERFCQLDRNNGGFISAEEFLSV-----P------EFARLLRMVDG- 67 (169)
Q Consensus 1 mg~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~l~~~el~~~-----~------~~~~~~~~~~~- 67 (169)
||+. .++++++.++.+.+. +.++..+++.++.-|.. ..++|.++.++|+.+ | -...+|+.+|.
T Consensus 1 m~~~~~~~~~~~~~e~l~~~--t~f~~~ei~~~Yr~Fk~--~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~ 76 (193)
T KOG0044|consen 1 MGKKSNSKLQPESLEQLVQQ--TKFSKKEIQQWYRGFKN--ECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKN 76 (193)
T ss_pred CCccccccCCcHHHHHHHHh--cCCCHHHHHHHHHHhcc--cCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhccc
Confidence 7887 788999999999999 56999999999999988 678999999999988 2 23478888887
Q ss_pred ----CCHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhh---CC---CCCHHHHHHHHHHHHHh
Q 030919 68 ----LNFKEFVAFLSAFSPHATLHQKIEFIFKVYDSDGNGKVTFTDMLDVLRDLT---GT---FISEKQREQVLTDVLDE 137 (169)
Q Consensus 68 ----i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~---~~---~~~~~~~~~~~~~~~~~ 137 (169)
|+|.||+..++... ++..++++.++|++||.||+|+||.+|+.+++...+ +. +.....++..+..+|.+
T Consensus 77 ~dg~i~F~Efi~als~~~-rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k 155 (193)
T KOG0044|consen 77 KDGTIDFLEFICALSLTS-RGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSK 155 (193)
T ss_pred CCCCcCHHHHHHHHHHHc-CCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHH
Confidence 99999999998876 899999999999999999999999999999887543 22 12234456667888999
Q ss_pred hCCCCCCcccHHHHHHHhcccCCceee
Q 030919 138 AGYTKDSLMILSDFVKILGNSGLKMEV 164 (169)
Q Consensus 138 ~d~~~dg~i~~~eF~~~l~~~~~~~~~ 164 (169)
+|.|+||.||++||+..+.+.+..+.+
T Consensus 156 ~D~n~Dg~lT~eef~~~~~~d~~i~~~ 182 (193)
T KOG0044|consen 156 MDKNKDGKLTLEEFIEGCKADPSILRA 182 (193)
T ss_pred cCCCCCCcccHHHHHHHhhhCHHHHHH
Confidence 999999999999999999988775543
No 5
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.87 E-value=4.3e-21 Score=126.71 Aligned_cols=160 Identities=26% Similarity=0.434 Sum_probs=143.1
Q ss_pred CCCccCCCCHHhHHHHHHHhcccCCHHHHHHHHHHHhhhcCC-----------CCCCcCHHHhcChhHHH------HHHH
Q 030919 1 MGNASSMLTQYDIEEVQQHCNHAFSQQEIVSLYERFCQLDRN-----------NGGFISAEEFLSVPEFA------RLLR 63 (169)
Q Consensus 1 mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~-----------~~g~l~~~el~~~~~~~------~~~~ 63 (169)
|||+.+.++.+++..++-. +.|+..+|.+++..|+.+.++ +.-.++.+.+.++|++. +|..
T Consensus 1 MGNK~~vFT~eqLd~YQDC--TFFtrKdIlrl~~Rf~~L~P~lVP~~~~~~~~~~v~vp~e~i~kMPELkenpfk~ri~e 78 (189)
T KOG0038|consen 1 MGNKQTVFTEEQLDEYQDC--TFFTRKDILRLHKRFYELAPHLVPTDMTGNRPPIVKVPFELIEKMPELKENPFKRRICE 78 (189)
T ss_pred CCCccceeeHHHHhhhccc--ccccHHHHHHHHHHHHHhCcccccccccCCCCCceeecHHHHhhChhhhcChHHHHHHH
Confidence 9999999999999999999 679999999999999987663 22358888888887665 6666
Q ss_pred Hhcc-----CCHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhh
Q 030919 64 MVDG-----LNFKEFVAFLSAFSPHATLHQKIEFIFKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEA 138 (169)
Q Consensus 64 ~~~~-----i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 138 (169)
.+.. ++|++|+.+++.+++.....-++..+|+.||-|+++.|...++...+..+....++++++..+|.+++.++
T Consensus 79 ~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEA 158 (189)
T KOG0038|consen 79 VFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEA 158 (189)
T ss_pred HhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHh
Confidence 6654 99999999999988777777889999999999999999999999999998888999999999999999999
Q ss_pred CCCCCCcccHHHHHHHhcccCCce
Q 030919 139 GYTKDSLMILSDFVKILGNSGLKM 162 (169)
Q Consensus 139 d~~~dg~i~~~eF~~~l~~~~~~~ 162 (169)
|.++||++++.+|..++.++|-.+
T Consensus 159 D~DgDgkl~~~eFe~~i~raPDFl 182 (189)
T KOG0038|consen 159 DLDGDGKLSFAEFEHVILRAPDFL 182 (189)
T ss_pred cCCCCCcccHHHHHHHHHhCcchH
Confidence 999999999999999999988644
No 6
>PTZ00183 centrin; Provisional
Probab=99.84 E-value=2.1e-19 Score=124.29 Aligned_cols=134 Identities=22% Similarity=0.444 Sum_probs=117.9
Q ss_pred ccCCHHHHHHHHHHHhhhcCCCCCCcCHHHhcCh----------hHHHHHHHHhcc-----CCHHHHHHHHHhhCCCCCH
Q 030919 22 HAFSQQEIVSLYERFCQLDRNNGGFISAEEFLSV----------PEFARLLRMVDG-----LNFKEFVAFLSAFSPHATL 86 (169)
Q Consensus 22 ~~~~~~~~~~~~~~F~~~D~~~~g~l~~~el~~~----------~~~~~~~~~~~~-----i~~~ef~~~~~~~~~~~~~ 86 (169)
..+++.+++++..+|..+|++++|.|+..+|..+ ..+..++..++. |++.+|+.++.........
T Consensus 9 ~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~ 88 (158)
T PTZ00183 9 PGLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDP 88 (158)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCc
Confidence 4588999999999999999999999999999765 346678888775 9999999988765445556
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhcccCC
Q 030919 87 HQKIEFIFKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILGNSGL 160 (169)
Q Consensus 87 ~~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~~ 160 (169)
...++.+|+.+|.+++|.|+.+||..++... +..+++.++..+ +..+|.+++|.|+|++|..++...|+
T Consensus 89 ~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~-~~~l~~~~~~~~----~~~~d~~~~g~i~~~ef~~~~~~~~~ 157 (158)
T PTZ00183 89 REEILKAFRLFDDDKTGKISLKNLKRVAKEL-GETITDEELQEM----IDEADRNGDGEISEEEFYRIMKKTNL 157 (158)
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHh-CCCCCHHHHHHH----HHHhCCCCCCcCcHHHHHHHHhcccC
Confidence 6789999999999999999999999999987 888999997766 99999999999999999999998876
No 7
>PTZ00184 calmodulin; Provisional
Probab=99.82 E-value=8.9e-19 Score=119.76 Aligned_cols=131 Identities=24% Similarity=0.517 Sum_probs=115.2
Q ss_pred ccCCHHHHHHHHHHHhhhcCCCCCCcCHHHhcCh----------hHHHHHHHHhcc-----CCHHHHHHHHHhhCCCCCH
Q 030919 22 HAFSQQEIVSLYERFCQLDRNNGGFISAEEFLSV----------PEFARLLRMVDG-----LNFKEFVAFLSAFSPHATL 86 (169)
Q Consensus 22 ~~~~~~~~~~~~~~F~~~D~~~~g~l~~~el~~~----------~~~~~~~~~~~~-----i~~~ef~~~~~~~~~~~~~ 86 (169)
.++++++++.++..|..+|.+++|.|+.++|..+ +.+..++..++. |++++|+.++.........
T Consensus 3 ~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~ 82 (149)
T PTZ00184 3 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDS 82 (149)
T ss_pred CccCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcH
Confidence 4588999999999999999999999999999865 356678888875 9999999998876555566
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhcc
Q 030919 87 HQKIEFIFKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILGN 157 (169)
Q Consensus 87 ~~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~ 157 (169)
...+..+|..+|.+++|.|+.++|..++... +..++.+++..+ +..+|.+++|.|+|++|+.++..
T Consensus 83 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~----~~~~d~~~~g~i~~~ef~~~~~~ 148 (149)
T PTZ00184 83 EEEIKEAFKVFDRDGNGFISAAELRHVMTNL-GEKLTDEEVDEM----IREADVDGDGQINYEEFVKMMMS 148 (149)
T ss_pred HHHHHHHHHhhCCCCCCeEeHHHHHHHHHHH-CCCCCHHHHHHH----HHhcCCCCCCcCcHHHHHHHHhc
Confidence 7889999999999999999999999999987 888888886666 89999999999999999988753
No 8
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.80 E-value=4.2e-18 Score=113.49 Aligned_cols=130 Identities=23% Similarity=0.426 Sum_probs=118.9
Q ss_pred ccCCHHHHHHHHHHHhhhcCCCCCCcCHHHhcCh----------hHHHHHHHHhcc-CCHHHHHHHHHhhCCCCCHHHHH
Q 030919 22 HAFSQQEIVSLYERFCQLDRNNGGFISAEEFLSV----------PEFARLLRMVDG-LNFKEFVAFLSAFSPHATLHQKI 90 (169)
Q Consensus 22 ~~~~~~~~~~~~~~F~~~D~~~~g~l~~~el~~~----------~~~~~~~~~~~~-i~~~ef~~~~~~~~~~~~~~~~~ 90 (169)
..|++.||++++++|..+|.|+||.|..++|+.. .++..++..... |+|.-|+.++.......++++.+
T Consensus 24 amf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea~gPINft~FLTmfGekL~gtdpe~~I 103 (171)
T KOG0031|consen 24 AMFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEAPGPINFTVFLTMFGEKLNGTDPEEVI 103 (171)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCeeHHHHHHHHHHHhcCCCHHHHH
Confidence 3479999999999999999999999999999987 356677777766 99999999998877678889999
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhc
Q 030919 91 EFIFKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILG 156 (169)
Q Consensus 91 ~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~ 156 (169)
..+|+.||.++.|.|..+.|+.+|... |.++++++++++ ++.+-++..|.++|..|+.+++
T Consensus 104 ~~AF~~FD~~~~G~I~~d~lre~Ltt~-gDr~~~eEV~~m----~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 104 LNAFKTFDDEGSGKIDEDYLRELLTTM-GDRFTDEEVDEM----YREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHhcCccCCCccCHHHHHHHHHHh-cccCCHHHHHHH----HHhCCcccCCceeHHHHHHHHH
Confidence 999999999999999999999999997 999999998877 9999999999999999999988
No 9
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=5.2e-18 Score=113.83 Aligned_cols=134 Identities=21% Similarity=0.400 Sum_probs=120.9
Q ss_pred hcccCCHHHHHHHHHHHhhhcCCCCCCcCHHHhcCh----------hHHHHHHHHhcc-----CCHHHHHHHHHhhCCCC
Q 030919 20 CNHAFSQQEIVSLYERFCQLDRNNGGFISAEEFLSV----------PEFARLLRMVDG-----LNFKEFVAFLSAFSPHA 84 (169)
Q Consensus 20 ~~~~~~~~~~~~~~~~F~~~D~~~~g~l~~~el~~~----------~~~~~~~~~~~~-----i~~~ef~~~~~~~~~~~ 84 (169)
..+.+++++-+.++..|..+|++++|+|..++|..+ .++.++...+++ |+|++|...++......
T Consensus 23 ~~~~l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~ 102 (172)
T KOG0028|consen 23 PKSELTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGER 102 (172)
T ss_pred CCccccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhcc
Confidence 345678888899999999999999999999999665 356678888887 99999999988877777
Q ss_pred CHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhccc
Q 030919 85 TLHQKIEFIFKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILGNS 158 (169)
Q Consensus 85 ~~~~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~ 158 (169)
+..+.+..+|+.+|.+++|.||..+|+.+...+ |++++++++.++ +.++|.+++|-|+-++|..+++..
T Consensus 103 dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeL-genltD~El~eM----IeEAd~d~dgevneeEF~~imk~t 171 (172)
T KOG0028|consen 103 DTKEEIKKAFRLFDDDKTGKISQRNLKRVAKEL-GENLTDEELMEM----IEEADRDGDGEVNEEEFIRIMKKT 171 (172)
T ss_pred CcHHHHHHHHHcccccCCCCcCHHHHHHHHHHh-CccccHHHHHHH----HHHhcccccccccHHHHHHHHhcC
Confidence 899999999999999999999999999999998 999999998877 899999999999999999998764
No 10
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.72 E-value=1.2e-16 Score=104.86 Aligned_cols=129 Identities=25% Similarity=0.414 Sum_probs=106.6
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCCCcCHHHhcCh-------h---HHHHHHHHhcc-------CCHHHHHHHHHhhCCC--
Q 030919 23 AFSQQEIVSLYERFCQLDRNNGGFISAEEFLSV-------P---EFARLLRMVDG-------LNFKEFVAFLSAFSPH-- 83 (169)
Q Consensus 23 ~~~~~~~~~~~~~F~~~D~~~~g~l~~~el~~~-------~---~~~~~~~~~~~-------i~~~ef~~~~~~~~~~-- 83 (169)
.+++++..+++++|..||..+||.|+..+...+ | ++.+.....++ ++|++|+.+++.+...
T Consensus 4 ~~~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~ 83 (152)
T KOG0030|consen 4 AFTPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKD 83 (152)
T ss_pred ccCcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccc
Confidence 367888899999999999999999999998877 3 34444444443 9999999999886532
Q ss_pred CCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhcc
Q 030919 84 ATLHQKIEFIFKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILGN 157 (169)
Q Consensus 84 ~~~~~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~ 157 (169)
...-+....-.+.||++++|.|...||+++|..+ |..++++|++.+ +... .|++|.|+|+.|++.+.+
T Consensus 84 q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttl-Gekl~eeEVe~L----lag~-eD~nG~i~YE~fVk~i~~ 151 (152)
T KOG0030|consen 84 QGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTL-GEKLTEEEVEEL----LAGQ-EDSNGCINYEAFVKHIMS 151 (152)
T ss_pred cCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHH-HhhccHHHHHHH----Hccc-cccCCcCcHHHHHHHHhc
Confidence 3344667778999999999999999999999998 999999998887 5554 488899999999987643
No 11
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.58 E-value=8e-14 Score=98.44 Aligned_cols=117 Identities=22% Similarity=0.338 Sum_probs=102.4
Q ss_pred HHHHHHHhhhcCCCCCCcCHHHhcCh-----------hHHHHHHHHhcc-----CCHHHHHHHHHhhCCCCCHHHHHHHH
Q 030919 30 VSLYERFCQLDRNNGGFISAEEFLSV-----------PEFARLLRMVDG-----LNFKEFVAFLSAFSPHATLHQKIEFI 93 (169)
Q Consensus 30 ~~~~~~F~~~D~~~~g~l~~~el~~~-----------~~~~~~~~~~~~-----i~~~ef~~~~~~~~~~~~~~~~~~~~ 93 (169)
..+...|...|.+..|+|+.++|.++ ..+.-+...+|+ |++.||..++..+ ...+.+
T Consensus 57 ~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i-------~~Wr~v 129 (221)
T KOG0037|consen 57 PQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYI-------NQWRNV 129 (221)
T ss_pred HHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH-------HHHHHH
Confidence 35677899999999999999999998 245567777776 9999999999987 688999
Q ss_pred HHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhccc
Q 030919 94 FKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILGNS 158 (169)
Q Consensus 94 F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~ 158 (169)
|+.||+|++|.|+..||+++|..+ |-.++++-..-+ ++++|..++|.|.+++|+++|-.-
T Consensus 130 F~~~D~D~SG~I~~sEL~~Al~~~-Gy~Lspq~~~~l----v~kyd~~~~g~i~FD~FI~ccv~L 189 (221)
T KOG0037|consen 130 FRTYDRDRSGTIDSSELRQALTQL-GYRLSPQFYNLL----VRKYDRFGGGRIDFDDFIQCCVVL 189 (221)
T ss_pred HHhcccCCCCcccHHHHHHHHHHc-CcCCCHHHHHHH----HHHhccccCCceeHHHHHHHHHHH
Confidence 999999999999999999999998 999999875555 889997779999999999887543
No 12
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.55 E-value=3.9e-14 Score=83.95 Aligned_cols=66 Identities=20% Similarity=0.510 Sum_probs=61.3
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHh
Q 030919 89 KIEFIFKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKIL 155 (169)
Q Consensus 89 ~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l 155 (169)
+++.+|+.+|.+++|+|+.+||..++..+ +...++++++..+..+|+.+|.|++|.|+++||++++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHL-GRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT-TSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHh-cccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 46889999999999999999999999998 7778888888899999999999999999999999875
No 13
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.41 E-value=1.1e-12 Score=81.87 Aligned_cols=65 Identities=15% Similarity=0.346 Sum_probs=57.7
Q ss_pred HHHHHHHHHhCC-CCCCcccHHHHHHHHHH-hhCCCCCH-HHHHHHHHHHHHhhCCCCCCcccHHHHHHHhcc
Q 030919 88 QKIEFIFKVYDS-DGNGKVTFTDMLDVLRD-LTGTFISE-KQREQVLTDVLDEAGYTKDSLMILSDFVKILGN 157 (169)
Q Consensus 88 ~~~~~~F~~~D~-~~~g~Is~~e~~~~l~~-~~~~~~~~-~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~ 157 (169)
..+..+|..||+ +++|+|+..||+.++.. + +..++. ++++.+ ++.+|.|+||+|+|+||+.++..
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~el-g~~ls~~~~v~~m----i~~~D~d~DG~I~F~EF~~l~~~ 75 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQL-PHLLKDVEGLEEK----MKNLDVNQDSKLSFEEFWELIGE 75 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHh-hhhccCHHHHHHH----HHHhCCCCCCCCcHHHHHHHHHH
Confidence 567899999999 99999999999999998 6 777877 776666 99999999999999999988754
No 14
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.37 E-value=2e-11 Score=93.62 Aligned_cols=127 Identities=18% Similarity=0.305 Sum_probs=110.9
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCCCcCHHHhcCh------h-----HHHHHHHHhcc-----CCHHHHHHHHHhhCCCCCH
Q 030919 23 AFSQQEIVSLYERFCQLDRNNGGFISAEEFLSV------P-----EFARLLRMVDG-----LNFKEFVAFLSAFSPHATL 86 (169)
Q Consensus 23 ~~~~~~~~~~~~~F~~~D~~~~g~l~~~el~~~------~-----~~~~~~~~~~~-----i~~~ef~~~~~~~~~~~~~ 86 (169)
...++.-.++..+|+.+|.+++|.++..++.+. | ....++...|. ++|.+|...+...
T Consensus 7 ~~~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~------ 80 (463)
T KOG0036|consen 7 ETDEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNK------ 80 (463)
T ss_pred CCcHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHh------
Confidence 356666778999999999999999999999965 2 33477888876 9999999998764
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhcccCC
Q 030919 87 HQKIEFIFKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILGNSGL 160 (169)
Q Consensus 87 ~~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~~ 160 (169)
+.++..+|...|.++||.|..+|+...++.+ +.+++++++..+ ++..|.++++.|+++||...+.-.|.
T Consensus 81 E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~-gi~l~de~~~k~----~e~~d~~g~~~I~~~e~rd~~ll~p~ 149 (463)
T KOG0036|consen 81 ELELYRIFQSIDLEHDGKIDPNEIWRYLKDL-GIQLSDEKAAKF----FEHMDKDGKATIDLEEWRDHLLLYPE 149 (463)
T ss_pred HHHHHHHHhhhccccCCccCHHHHHHHHHHh-CCccCHHHHHHH----HHHhccCCCeeeccHHHHhhhhcCCh
Confidence 4789999999999999999999999999998 999999997665 89999999999999999999888774
No 15
>PLN02964 phosphatidylserine decarboxylase
Probab=99.32 E-value=3.3e-11 Score=98.90 Aligned_cols=124 Identities=16% Similarity=0.277 Sum_probs=94.3
Q ss_pred CCCHHhHHHHHHHhcccCCHHHHHHHHHHHhhhcCCCCCCcCHHHhcChhHHHHHHHHhccCCHHHHHHHHHhhCCCCCH
Q 030919 7 MLTQYDIEEVQQHCNHAFSQQEIVSLYERFCQLDRNNGGFISAEEFLSVPEFARLLRMVDGLNFKEFVAFLSAFSPHATL 86 (169)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~l~~~el~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~ 86 (169)
++++.++..+...-.+.|+.+|++++++.|..+|++++|.+ +. .++..+. .. ....
T Consensus 120 ~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dgdG~i----Lg------~ilrslG------------~~--~pte 175 (644)
T PLN02964 120 RLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSSSNKV----VG------SIFVSCS------------IE--DPVE 175 (644)
T ss_pred CCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCCCCcC----HH------HHHHHhC------------CC--CCCH
Confidence 46777777777775567999999999999999999999995 22 1111111 00 1122
Q ss_pred H--HHHHHHHHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhcccC
Q 030919 87 H--QKIEFIFKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILGNSG 159 (169)
Q Consensus 87 ~--~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~ 159 (169)
. ..+..+|+.+|.+++|.|+++||..++..+ +...+++++..+ |+.+|.|++|.|+++||..++....
T Consensus 176 ~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~l-g~~~seEEL~ea----Fk~fDkDgdG~Is~dEL~~vL~~~~ 245 (644)
T PLN02964 176 TERSFARRILAIVDYDEDGQLSFSEFSDLIKAF-GNLVAANKKEEL----FKAADLNGDGVVTIDELAALLALQQ 245 (644)
T ss_pred HHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHh-ccCCCHHHHHHH----HHHhCCCCCCcCCHHHHHHHHHhcc
Confidence 2 247888999999999999999999999876 767777776655 9999999999999999999887743
No 16
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.31 E-value=1.7e-11 Score=76.55 Aligned_cols=65 Identities=12% Similarity=0.310 Sum_probs=57.6
Q ss_pred HHHHHHHHHhC-CCCCC-cccHHHHHHHHHH-----hhCCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhcc
Q 030919 88 QKIEFIFKVYD-SDGNG-KVTFTDMLDVLRD-----LTGTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILGN 157 (169)
Q Consensus 88 ~~~~~~F~~~D-~~~~g-~Is~~e~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~ 157 (169)
..+..+|..|| ++|+| .|+.+||+.++.. + +...++++++.+ ++.+|.|++|+|+|++|+.++..
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~l-g~~~~~~~v~~~----i~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFL-EEIKEQEVVDKV----METLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHh-cCCCCHHHHHHH----HHHhCCCCCCcCcHHHHHHHHHH
Confidence 46789999998 79999 5999999999998 5 888888887777 88999999999999999988753
No 17
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.27 E-value=8.8e-11 Score=83.05 Aligned_cols=97 Identities=19% Similarity=0.338 Sum_probs=84.3
Q ss_pred hHHHHHHHHhcc------CCHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHH
Q 030919 56 PEFARLLRMVDG------LNFKEFVAFLSAFSPHATLHQKIEFIFKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQ 129 (169)
Q Consensus 56 ~~~~~~~~~~~~------i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~ 129 (169)
.++..+|+.+.. ++.++|..++..+.+.++.......+|+.||.|++|.|++.||..++..+ .....++.
T Consensus 26 ~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~-~rGt~eek--- 101 (193)
T KOG0044|consen 26 KEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLT-SRGTLEEK--- 101 (193)
T ss_pred HHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHH-cCCcHHHH---
Confidence 467788888876 99999999999999989999999999999999999999999999999877 33333433
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHhcc
Q 030919 130 VLTDVLDEAGYTKDSLMILSDFVKILGN 157 (169)
Q Consensus 130 ~~~~~~~~~d~~~dg~i~~~eF~~~l~~ 157 (169)
.+++|+.+|.|++|.|+++|++.++..
T Consensus 102 -l~w~F~lyD~dgdG~It~~Eml~iv~~ 128 (193)
T KOG0044|consen 102 -LKWAFRLYDLDGDGYITKEEMLKIVQA 128 (193)
T ss_pred -hhhhheeecCCCCceEcHHHHHHHHHH
Confidence 667799999999999999999887764
No 18
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.19 E-value=1.3e-10 Score=72.65 Aligned_cols=66 Identities=15% Similarity=0.413 Sum_probs=56.7
Q ss_pred HHHHHHHHHhCC-CC-CCcccHHHHHHHHHHh--hCCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhcc
Q 030919 88 QKIEFIFKVYDS-DG-NGKVTFTDMLDVLRDL--TGTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILGN 157 (169)
Q Consensus 88 ~~~~~~F~~~D~-~~-~g~Is~~e~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~ 157 (169)
..+..+|..||. +| +|+|+.+||++++... .+..+++++++++ ++.+|.|++|+|+|+||+.++..
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m----~~~~D~d~dG~Idf~EFv~lm~~ 79 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKL----MEDLDRNKDQEVNFQEYVTFLGA 79 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHH----HHHhcCCCCCCCcHHHHHHHHHH
Confidence 457788999998 67 8999999999999741 2888999997777 89999999999999999988764
No 19
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.19 E-value=1.2e-10 Score=73.76 Aligned_cols=69 Identities=10% Similarity=0.308 Sum_probs=57.5
Q ss_pred HHHHHHHHHhCC-CC-CCcccHHHHHHHHHHhh----CCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhcccCC
Q 030919 88 QKIEFIFKVYDS-DG-NGKVTFTDMLDVLRDLT----GTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILGNSGL 160 (169)
Q Consensus 88 ~~~~~~F~~~D~-~~-~g~Is~~e~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~~ 160 (169)
..++.+|..||. ++ +|.|+.+|++.++.... +..+++++++.+ ++.+|.+++|.|+|++|+.++.+..+
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~----~~~~D~~~dg~I~f~eF~~l~~~~~~ 82 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKI----MKDLDQNRDGKVNFEEFVSLVAGLSI 82 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHH----HHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 568899999997 87 69999999999998621 456778886666 89999999999999999998876443
No 20
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.18 E-value=1.5e-10 Score=73.14 Aligned_cols=66 Identities=15% Similarity=0.322 Sum_probs=53.4
Q ss_pred HHHHHHHHHhC-CCCCC-cccHHHHHHHHHHhhC----CCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhcc
Q 030919 88 QKIEFIFKVYD-SDGNG-KVTFTDMLDVLRDLTG----TFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILGN 157 (169)
Q Consensus 88 ~~~~~~F~~~D-~~~~g-~Is~~e~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~ 157 (169)
..+..+|..|| .+|+| .||..||+.++....+ ...++.+++++ ++.+|.|++|.|+|+||+.++..
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i----~~elD~n~dG~Idf~EF~~l~~~ 81 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKI----MNDLDSNKDNEVDFNEFVVLVAA 81 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHH----HHHhCCCCCCCCCHHHHHHHHHH
Confidence 45778899999 78998 5999999999976322 23466676665 99999999999999999988754
No 21
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=99.18 E-value=1.6e-10 Score=83.35 Aligned_cols=158 Identities=15% Similarity=0.244 Sum_probs=119.2
Q ss_pred CccCCCCHHhHHHHHHHhcccCCHHHHHHHHHHHhhhcCCCCCCcCHHHhcCh-------------------------hH
Q 030919 3 NASSMLTQYDIEEVQQHCNHAFSQQEIVSLYERFCQLDRNNGGFISAEEFLSV-------------------------PE 57 (169)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~l~~~el~~~-------------------------~~ 57 (169)
|..++|+..++++.+...+..--++...+.+..|+..|+++||.|+++++.-. .+
T Consensus 113 NtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlaskghsekevadairlneelkVDeE 192 (362)
T KOG4251|consen 113 NTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKEVADAIRLNEELKVDEE 192 (362)
T ss_pred CccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCcchHHHHHHhhccCcccccHH
Confidence 34567888888877776544444555566788999999999999999998754 01
Q ss_pred HHHHHHHh-------cc------CCHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHH----HhhCC
Q 030919 58 FARLLRMV-------DG------LNFKEFVAFLSAFSPHATLHQKIEFIFKVYDSDGNGKVTFTDMLDVLR----DLTGT 120 (169)
Q Consensus 58 ~~~~~~~~-------~~------i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~Is~~e~~~~l~----~~~~~ 120 (169)
-+.+.+.+ |+ ++-.||+.++.....++....-++.+.+.+|++|+..+|..+|....- ...+.
T Consensus 193 tqevlenlkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeFislpvGTVenqqgq 272 (362)
T KOG4251|consen 193 TQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQ 272 (362)
T ss_pred HHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhhhcCCCcchhhhhcc
Confidence 11222222 11 777999999988776777888899999999999999999999987642 33356
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhcccCC
Q 030919 121 FISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILGNSGL 160 (169)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~~ 160 (169)
.+.+.+++.-.++.-..+|.|+||.++++|...++.....
T Consensus 273 diddnwvkdRkkEFeElIDsNhDGivTaeELe~y~dP~n~ 312 (362)
T KOG4251|consen 273 DIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYVDPQNF 312 (362)
T ss_pred chHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhcCchhh
Confidence 6777777777777788889999999999999888655443
No 22
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=99.18 E-value=3.3e-10 Score=88.13 Aligned_cols=138 Identities=21% Similarity=0.351 Sum_probs=111.4
Q ss_pred HHHHHhcccCCHHHHHHHHHHHhhhcCCCCCCcCHHHhcCh-------hHHHHHHHHhcc---------CCHHHHHHHHH
Q 030919 15 EVQQHCNHAFSQQEIVSLYERFCQLDRNNGGFISAEEFLSV-------PEFARLLRMVDG---------LNFKEFVAFLS 78 (169)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~l~~~el~~~-------~~~~~~~~~~~~---------i~~~ef~~~~~ 78 (169)
.......+.||.++...++..|+.+|+|+||.|+.++|... --+.+||..+.+ ++|++|+.++.
T Consensus 263 ed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~Fil 342 (493)
T KOG2562|consen 263 EDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGDHTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFIL 342 (493)
T ss_pred hhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHhccchhhHHHHHHHhhccccceeeecCcccHHHHHHHHH
Confidence 35556667899999999999999999999999999999987 234588885543 99999999999
Q ss_pred hhCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhh----CCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHH
Q 030919 79 AFSPHATLHQKIEFIFKVYDSDGNGKVTFTDMLDVLRDLT----GTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVK 153 (169)
Q Consensus 79 ~~~~~~~~~~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~ 153 (169)
+.. .......++..|+.+|.+++|.|+..|++.+..... .....+--.++++++++....+...++|+..+|+.
T Consensus 343 A~e-~k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 343 AEE-DKDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred Hhc-cCCCccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 875 567778899999999999999999999988775421 11122222356678889999888899999999987
No 23
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.15 E-value=2.8e-10 Score=71.81 Aligned_cols=66 Identities=14% Similarity=0.283 Sum_probs=55.2
Q ss_pred HHHHHHHHHhC-CCCCC-cccHHHHHHHHHHhhCC----CCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhcc
Q 030919 88 QKIEFIFKVYD-SDGNG-KVTFTDMLDVLRDLTGT----FISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILGN 157 (169)
Q Consensus 88 ~~~~~~F~~~D-~~~~g-~Is~~e~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~ 157 (169)
+.++.+|..|| .+++| .|+.+||+.++....+. .+++++++.+ +..+|.+++|.|+|++|+.++.+
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i----~~~~D~d~~G~I~f~eF~~l~~~ 80 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKI----MKELDENGDGEVDFQEFVVLVAA 80 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHH----HHHHCCCCCCcCcHHHHHHHHHH
Confidence 56899999997 99999 59999999999862143 4577776666 89999999999999999988764
No 24
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=99.13 E-value=1.6e-10 Score=89.54 Aligned_cols=127 Identities=18% Similarity=0.277 Sum_probs=87.8
Q ss_pred HHHHHHHhhhcCCCCCCcCHHHhcCh---------hHHH---HHHHHhcc--CCHHHHHHHHHhhC-----------CCC
Q 030919 30 VSLYERFCQLDRNNGGFISAEEFLSV---------PEFA---RLLRMVDG--LNFKEFVAFLSAFS-----------PHA 84 (169)
Q Consensus 30 ~~~~~~F~~~D~~~~g~l~~~el~~~---------~~~~---~~~~~~~~--i~~~ef~~~~~~~~-----------~~~ 84 (169)
.++..-|+.+|+..+|.|+..++..+ |+.. ++...-+. +.+.+.+..+..-. ..+
T Consensus 464 sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetLY 543 (631)
T KOG0377|consen 464 SDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVETLY 543 (631)
T ss_pred hHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHHHH
Confidence 45677899999999999999999887 3321 11111111 33333332221100 012
Q ss_pred CHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhh---CCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhcccCC
Q 030919 85 TLHQKIEFIFKVYDSDGNGKVTFTDMLDVLRDLT---GTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILGNSGL 160 (169)
Q Consensus 85 ~~~~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~~ 160 (169)
.....+..+|+.+|.|++|.||.+||+.++.-+. ...+++.++-++ .+.+|.|+||+|++.||+.+++-...
T Consensus 544 r~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~l----a~~mD~NkDG~IDlNEfLeAFrlvdr 618 (631)
T KOG0377|consen 544 RNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILEL----ARSMDLNKDGKIDLNEFLEAFRLVDR 618 (631)
T ss_pred hchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHH----HHhhccCCCCcccHHHHHHHHhhhcc
Confidence 3345688999999999999999999999987652 335667775444 78899999999999999998875544
No 25
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.12 E-value=4.8e-10 Score=77.12 Aligned_cols=70 Identities=23% Similarity=0.475 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhcccCC
Q 030919 86 LHQKIEFIFKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILGNSGL 160 (169)
Q Consensus 86 ~~~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~~ 160 (169)
....++.+|..||.+++|.|+..||..+++.+ +..++..++..+ ++..|.+++|.|++++|+.++.+...
T Consensus 6 ~~~el~~~F~~fD~d~~G~i~~~el~~~lr~l-g~~~t~~el~~~----~~~~D~dg~g~I~~~eF~~l~~~~~~ 75 (151)
T KOG0027|consen 6 QILELKEAFQLFDKDGDGKISVEELGAVLRSL-GQNPTEEELRDL----IKEIDLDGDGTIDFEEFLDLMEKLGE 75 (151)
T ss_pred HHHHHHHHHHHHCCCCCCcccHHHHHHHHHHc-CCCCCHHHHHHH----HHHhCCCCCCeEcHHHHHHHHHhhhc
Confidence 34678999999999999999999999999998 999999997777 99999999999999999999987765
No 26
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.11 E-value=2.2e-10 Score=67.68 Aligned_cols=62 Identities=23% Similarity=0.310 Sum_probs=53.5
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhcccC
Q 030919 91 EFIFKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILGNSG 159 (169)
Q Consensus 91 ~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~ 159 (169)
+.+|..+|.+++|.|+.+|+..++... + .++++++.+ +..+|.+++|.|+|++|+.++....
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~-g--~~~~~~~~i----~~~~d~~~~g~i~~~ef~~~~~~~~ 63 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKS-G--LPRSVLAQI----WDLADTDKDGKLDKEEFAIAMHLIA 63 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHc-C--CCHHHHHHH----HHHhcCCCCCcCCHHHHHHHHHHHH
Confidence 468999999999999999999999886 5 477776665 8999999999999999998876543
No 27
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.10 E-value=5.6e-10 Score=69.80 Aligned_cols=67 Identities=13% Similarity=0.360 Sum_probs=55.8
Q ss_pred HHHHHHHHHhCC--CCCCcccHHHHHHHHHHhhCCCC----CHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhccc
Q 030919 88 QKIEFIFKVYDS--DGNGKVTFTDMLDVLRDLTGTFI----SEKQREQVLTDVLDEAGYTKDSLMILSDFVKILGNS 158 (169)
Q Consensus 88 ~~~~~~F~~~D~--~~~g~Is~~e~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~ 158 (169)
..++.+|..||+ +++|.|+.++|..++....+..+ +..+++.+ +..+|.+++|.|+|++|+.++...
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i----~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKI----MKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHH----HHHhccCCCCcCcHHHHHHHHHHH
Confidence 568889999999 89999999999999976324433 47776555 999999999999999999988654
No 28
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.08 E-value=4.2e-10 Score=63.82 Aligned_cols=52 Identities=21% Similarity=0.434 Sum_probs=46.6
Q ss_pred CCCcccHHHHHHHHHHhhCCC-CCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhcc
Q 030919 101 GNGKVTFTDMLDVLRDLTGTF-ISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILGN 157 (169)
Q Consensus 101 ~~g~Is~~e~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~ 157 (169)
.+|.|+.++|+.++..+ |.. ++++++..+ +..+|.+++|.|+|+||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~-g~~~~s~~e~~~l----~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKL-GIKDLSEEEVDRL----FREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHT-TSSSSCHHHHHHH----HHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHh-CCCCCCHHHHHHH----HHhcccCCCCCCCHHHHHHHHHh
Confidence 37999999999999776 888 999997776 99999999999999999998864
No 29
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.08 E-value=1.1e-09 Score=69.64 Aligned_cols=64 Identities=20% Similarity=0.274 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhcc
Q 030919 87 HQKIEFIFKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILGN 157 (169)
Q Consensus 87 ~~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~ 157 (169)
...+..+|..+|.+++|.|+.++++.++... + +++++++.+ +..+|.+++|.|+|++|+.++..
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~-~--~~~~ev~~i----~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLKS-G--LPQTLLAKI----WNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHHc-C--CCHHHHHHH----HHHhcCCCCCCcCHHHHHHHHHH
Confidence 4678999999999999999999999999875 5 678886666 89999999999999999987654
No 30
>PTZ00183 centrin; Provisional
Probab=99.06 E-value=5.1e-09 Score=72.08 Aligned_cols=99 Identities=17% Similarity=0.316 Sum_probs=79.6
Q ss_pred HHHHHHHHhcc-----CCHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHH
Q 030919 57 EFARLLRMVDG-----LNFKEFVAFLSAFSPHATLHQKIEFIFKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQVL 131 (169)
Q Consensus 57 ~~~~~~~~~~~-----i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~ 131 (169)
++..+|..+|. |++.+|..++.... .......+..+|..+|.+++|.|+.++|..++........+.+. +
T Consensus 18 ~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g-~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~----l 92 (158)
T PTZ00183 18 EIREAFDLFDTDGSGTIDPKELKVAMRSLG-FEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREE----I 92 (158)
T ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHH----H
Confidence 56677888886 99999999887653 33456789999999999999999999999988764334445555 4
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHhcccCC
Q 030919 132 TDVLDEAGYTKDSLMILSDFVKILGNSGL 160 (169)
Q Consensus 132 ~~~~~~~d~~~dg~i~~~eF~~~l~~~~~ 160 (169)
+.+|..+|.+++|.|+.++|..++...+.
T Consensus 93 ~~~F~~~D~~~~G~i~~~e~~~~l~~~~~ 121 (158)
T PTZ00183 93 LKAFRLFDDDKTGKISLKNLKRVAKELGE 121 (158)
T ss_pred HHHHHHhCCCCCCcCcHHHHHHHHHHhCC
Confidence 55599999999999999999999987654
No 31
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=6.3e-09 Score=77.82 Aligned_cols=129 Identities=20% Similarity=0.301 Sum_probs=92.1
Q ss_pred HHHHHHHHHHhhhcCCCCCCcCHHHhcCh----------hHHHHHHHHhcc-----CCHHHHHHHHHhhC------CCCC
Q 030919 27 QEIVSLYERFCQLDRNNGGFISAEEFLSV----------PEFARLLRMVDG-----LNFKEFVAFLSAFS------PHAT 85 (169)
Q Consensus 27 ~~~~~~~~~F~~~D~~~~g~l~~~el~~~----------~~~~~~~~~~~~-----i~~~ef~~~~~~~~------~~~~ 85 (169)
+.-.++..++.++|.+++|.|+..++... .+..+-+...+. |+|++|...+.... ....
T Consensus 74 e~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e 153 (325)
T KOG4223|consen 74 ESQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEE 153 (325)
T ss_pred hhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccch
Confidence 34566888999999999999999999986 122233444443 99999987665310 1111
Q ss_pred HH-------HHHHHHHHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhccc
Q 030919 86 LH-------QKIEFIFKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILGNS 158 (169)
Q Consensus 86 ~~-------~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~ 158 (169)
.. ..=+.-|+.-|.|++|.+|++||..++. +.-.+....-+|+..+...|.|+||+|+++||+.-+...
T Consensus 154 ~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLH----PEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~ 229 (325)
T KOG4223|consen 154 DNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLH----PEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSH 229 (325)
T ss_pred hcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccC----hhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhc
Confidence 11 1234679999999999999999998883 333333334456777899999999999999999776655
Q ss_pred C
Q 030919 159 G 159 (169)
Q Consensus 159 ~ 159 (169)
.
T Consensus 230 ~ 230 (325)
T KOG4223|consen 230 E 230 (325)
T ss_pred c
Confidence 4
No 32
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.04 E-value=2.4e-09 Score=61.57 Aligned_cols=62 Identities=21% Similarity=0.533 Sum_probs=55.2
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhc
Q 030919 90 IEFIFKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILG 156 (169)
Q Consensus 90 ~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~ 156 (169)
+..+|..+|.+++|.|+.+++..++..+ +...+.+.+..+ +..+|.+++|.|++++|+.++.
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~-~~~~~~~~~~~~----~~~~~~~~~~~l~~~ef~~~~~ 63 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSL-GEGLSEEEIDEM----IREVDKDGDGKIDFEEFLELMA 63 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHh-CCCCCHHHHHHH----HHHhCCCCCCeEeHHHHHHHhC
Confidence 5678999999999999999999999987 888888886665 9999999999999999998763
No 33
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.03 E-value=2.1e-09 Score=67.28 Aligned_cols=66 Identities=12% Similarity=0.318 Sum_probs=53.6
Q ss_pred HHHHHHHHH-hCCCCCC-cccHHHHHHHHHHhh----CCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhcc
Q 030919 88 QKIEFIFKV-YDSDGNG-KVTFTDMLDVLRDLT----GTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILGN 157 (169)
Q Consensus 88 ~~~~~~F~~-~D~~~~g-~Is~~e~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~ 157 (169)
..+..+|.. +|.+|+| .||.+||+.++.... +...++.+++.+ ++.+|.|+||.|+|+||+.++..
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~l----l~~~D~d~DG~I~f~EF~~l~~~ 80 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRM----MKKLDLNSDGQLDFQEFLNLIGG 80 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHH----HHHcCCCCCCcCcHHHHHHHHHH
Confidence 567888998 6788876 999999999998752 234556776665 99999999999999999988754
No 34
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.02 E-value=1.4e-08 Score=69.74 Aligned_cols=107 Identities=17% Similarity=0.294 Sum_probs=88.6
Q ss_pred cCHHHhcChhHHHHHHHHhcc-----CCHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhhCCC
Q 030919 47 ISAEEFLSVPEFARLLRMVDG-----LNFKEFVAFLSAFSPHATLHQKIEFIFKVYDSDGNGKVTFTDMLDVLRDLTGTF 121 (169)
Q Consensus 47 l~~~el~~~~~~~~~~~~~~~-----i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~ 121 (169)
++.+|.. ++.+.|..+|. |+..++..++.. ++.......+..+|..+|. |+|.|++.+|..++.......
T Consensus 14 ~t~~qi~---~lkeaF~l~D~d~~G~I~~~el~~ilr~-lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~ 88 (160)
T COG5126 14 LTEEQIQ---ELKEAFQLFDRDSDGLIDRNELGKILRS-LGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRG 88 (160)
T ss_pred CCHHHHH---HHHHHHHHhCcCCCCCCcHHHHHHHHHH-cCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccC
Confidence 4444444 55577777776 999999999984 5688999999999999999 999999999999998875566
Q ss_pred CCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhcccCCce
Q 030919 122 ISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILGNSGLKM 162 (169)
Q Consensus 122 ~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~~~~ 162 (169)
-+.+++... |+.+|.|++|.|+..++..+++.-+..+
T Consensus 89 ~~~Eel~~a----F~~fD~d~dG~Is~~eL~~vl~~lge~~ 125 (160)
T COG5126 89 DKEEELREA----FKLFDKDHDGYISIGELRRVLKSLGERL 125 (160)
T ss_pred CcHHHHHHH----HHHhCCCCCceecHHHHHHHHHhhcccC
Confidence 667775544 9999999999999999999999766643
No 35
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.99 E-value=3.1e-09 Score=69.56 Aligned_cols=62 Identities=15% Similarity=0.341 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhcc
Q 030919 87 HQKIEFIFKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILGN 157 (169)
Q Consensus 87 ~~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~ 157 (169)
...+.++|..+|.|++|.||.+|+..+. + . ..... +..+|..+|.|+||.||++||..++.+
T Consensus 47 ~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l-~--~~e~~----~~~f~~~~D~n~Dg~IS~~Ef~~cl~~ 108 (116)
T cd00252 47 KDPVGWMFNQLDGNYDGKLSHHELAPIR--L-D--PNEHC----IKPFFESCDLDKDGSISLDEWCYCFIK 108 (116)
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHH--c-c--chHHH----HHHHHHHHCCCCCCCCCHHHHHHHHhC
Confidence 4678999999999999999999999876 2 2 22333 455699999999999999999999943
No 36
>PTZ00184 calmodulin; Provisional
Probab=98.95 E-value=2.3e-08 Score=67.94 Aligned_cols=98 Identities=16% Similarity=0.358 Sum_probs=77.3
Q ss_pred HHHHHHHHhcc-----CCHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHH
Q 030919 57 EFARLLRMVDG-----LNFKEFVAFLSAFSPHATLHQKIEFIFKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQVL 131 (169)
Q Consensus 57 ~~~~~~~~~~~-----i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~ 131 (169)
.+...|..+|. |++.+|..++.... .....+.+..+|+.+|.+++|.|+.++|..++..........+. +
T Consensus 12 ~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~----~ 86 (149)
T PTZ00184 12 EFKEAFSLFDKDGDGTITTKELGTVMRSLG-QNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEE----I 86 (149)
T ss_pred HHHHHHHHHcCCCCCcCCHHHHHHHHHHhC-CCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHH----H
Confidence 45677888876 99999999887654 33446789999999999999999999999998765222333333 4
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHhcccC
Q 030919 132 TDVLDEAGYTKDSLMILSDFVKILGNSG 159 (169)
Q Consensus 132 ~~~~~~~d~~~dg~i~~~eF~~~l~~~~ 159 (169)
..+|..+|.+++|.|+.++|..++...+
T Consensus 87 ~~~F~~~D~~~~g~i~~~e~~~~l~~~~ 114 (149)
T PTZ00184 87 KEAFKVFDRDGNGFISAAELRHVMTNLG 114 (149)
T ss_pred HHHHHhhCCCCCCeEeHHHHHHHHHHHC
Confidence 5559999999999999999999987654
No 37
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=4.1e-08 Score=73.55 Aligned_cols=148 Identities=20% Similarity=0.282 Sum_probs=100.0
Q ss_pred cCCCCHHhHHHHHHHhcccCCHHHHHHHHHHHhhhcCCCCCCcCHHHhcCh------------------------hHHHH
Q 030919 5 SSMLTQYDIEEVQQHCNHAFSQQEIVSLYERFCQLDRNNGGFISAEEFLSV------------------------PEFAR 60 (169)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~l~~~el~~~------------------------~~~~~ 60 (169)
.+-++..++..++... .-..-..+....|..+|.+.+|.|++++.... ++=.+
T Consensus 91 Dgfv~~~El~~wi~~s---~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~~~~~~km~~rDe~ 167 (325)
T KOG4223|consen 91 DGFVTESELKAWIMQS---QKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEEDNEEYKKMIARDEE 167 (325)
T ss_pred CCceeHHHHHHHHHHH---HHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccchhcHHHHHHHHHHHH
Confidence 3445566666665553 22333455677888999999999999988765 11125
Q ss_pred HHHHhcc-----CCHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhhC----CCCCHHHHHHHH
Q 030919 61 LLRMVDG-----LNFKEFVAFLSAFSPHATLHQKIEFIFKVYDSDGNGKVTFTDMLDVLRDLTG----TFISEKQREQVL 131 (169)
Q Consensus 61 ~~~~~~~-----i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~----~~~~~~~~~~~~ 131 (169)
.|+..|. ++.+||.+++..---..-..--+.....-.|+|++|.|+.+||..=+....+ +..-..+.+.+
T Consensus 168 rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~Ere~F- 246 (325)
T KOG4223|consen 168 RFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLTEREQF- 246 (325)
T ss_pred HHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCcccccccHHHH-
Confidence 6666665 9999999998764323333345677788899999999999999776654423 11112222333
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHhcccC
Q 030919 132 TDVLDEAGYTKDSLMILSDFVKILGNSG 159 (169)
Q Consensus 132 ~~~~~~~d~~~dg~i~~~eF~~~l~~~~ 159 (169)
+...|.|+||+++-+|...|+.-.+
T Consensus 247 ---~~~~DknkDG~L~~dEl~~WI~P~~ 271 (325)
T KOG4223|consen 247 ---FEFRDKNKDGKLDGDELLDWILPSE 271 (325)
T ss_pred ---HHHhhcCCCCccCHHHHhcccCCCC
Confidence 6677888888888888887776544
No 38
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.89 E-value=3.1e-09 Score=62.70 Aligned_cols=65 Identities=28% Similarity=0.631 Sum_probs=48.8
Q ss_pred HHHHHHhhhcCCCCCCcCHHHhcChhHHHHHHHHhcc-CCHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCCCCCcccHHH
Q 030919 31 SLYERFCQLDRNNGGFISAEEFLSVPEFARLLRMVDG-LNFKEFVAFLSAFSPHATLHQKIEFIFKVYDSDGNGKVTFTD 109 (169)
Q Consensus 31 ~~~~~F~~~D~~~~g~l~~~el~~~~~~~~~~~~~~~-i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~Is~~e 109 (169)
+++.+|+.+|.+++|+|+.++|..+.. .+.. ++ .....+.+..+|+.+|.+++|.|+.+|
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~------~~~~~~~-------------~~~~~~~~~~~~~~~D~d~dG~i~~~E 61 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALK------HLGRDMS-------------DEESDEMIDQIFREFDTDGDGRISFDE 61 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHH------HTTSHST-------------HHHHHHHHHHHHHHHTTTSSSSEEHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHH------Hhccccc-------------HHHHHHHHHHHHHHhCCCCcCCCcHHH
Confidence 367899999999999999999985521 1111 11 112335677889999999999999999
Q ss_pred HHHHH
Q 030919 110 MLDVL 114 (169)
Q Consensus 110 ~~~~l 114 (169)
|..++
T Consensus 62 f~~~~ 66 (66)
T PF13499_consen 62 FLNFM 66 (66)
T ss_dssp HHHHH
T ss_pred HhccC
Confidence 98764
No 39
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.88 E-value=8.9e-08 Score=68.10 Aligned_cols=136 Identities=20% Similarity=0.334 Sum_probs=105.0
Q ss_pred cCCCCHHhHHHHHHH-hcccCCHHHHHHHHHHHhhhcCCCCCCcCHHHhcCh----hHHHHHHHHhcc-----CCHHHHH
Q 030919 5 SSMLTQYDIEEVQQH-CNHAFSQQEIVSLYERFCQLDRNNGGFISAEEFLSV----PEFARLLRMVDG-----LNFKEFV 74 (169)
Q Consensus 5 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~F~~~D~~~~g~l~~~el~~~----~~~~~~~~~~~~-----i~~~ef~ 74 (169)
++.|...++.....+ ....|+ +...+.+...+|.+.+|.|..+||..+ ...+.+|..+|+ |+-.|+.
T Consensus 71 sg~i~~~eLq~aLsn~~~~~Fs---~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~~Wr~vF~~~D~D~SG~I~~sEL~ 147 (221)
T KOG0037|consen 71 SGRILAKELQQALSNGTWSPFS---IETCRLMISMFDRDNSGTIGFKEFKALWKYINQWRNVFRTYDRDRSGTIDSSELR 147 (221)
T ss_pred cccccHHHHHHHhhcCCCCCCC---HHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHHHHHHHhcccCCCCcccHHHHH
Confidence 445666666666553 334444 444556667788899999999999988 355688999987 9999999
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCC--cccHHHHH
Q 030919 75 AFLSAFSPHATLHQKIEFIFKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKDS--LMILSDFV 152 (169)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg--~i~~~eF~ 152 (169)
..+..+ +.....+....+++.||..++|.|.+++|.+.+..+. . .-+.|++.|.+..| .|+|++|+
T Consensus 148 ~Al~~~-Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~--~---------lt~~Fr~~D~~q~G~i~~~y~dfl 215 (221)
T KOG0037|consen 148 QALTQL-GYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQ--R---------LTEAFRRRDTAQQGSITISYDDFL 215 (221)
T ss_pred HHHHHc-CcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHHH--H---------HHHHHHHhccccceeEEEeHHHHH
Confidence 998885 3777888899999999999999999999999987762 1 22338999999888 67899998
Q ss_pred HHh
Q 030919 153 KIL 155 (169)
Q Consensus 153 ~~l 155 (169)
.+.
T Consensus 216 ~~t 218 (221)
T KOG0037|consen 216 QMT 218 (221)
T ss_pred HHh
Confidence 764
No 40
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.87 E-value=1.1e-08 Score=63.86 Aligned_cols=66 Identities=11% Similarity=0.287 Sum_probs=53.7
Q ss_pred HHHHHHHHHhCCC--CCCcccHHHHHHHHHHhhCCCCC----HHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhcc
Q 030919 88 QKIEFIFKVYDSD--GNGKVTFTDMLDVLRDLTGTFIS----EKQREQVLTDVLDEAGYTKDSLMILSDFVKILGN 157 (169)
Q Consensus 88 ~~~~~~F~~~D~~--~~g~Is~~e~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~ 157 (169)
..+...|..|+.+ .+|.|+.+||+.++....+..++ +.+++.+ +..+|.+++|.|+|++|+.++..
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i----~~~~D~d~dG~I~f~eF~~~~~~ 79 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKI----FEDLDTNQDGQLSFEEFLVLVIK 79 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHH----HHHcCCCCCCcCcHHHHHHHHHH
Confidence 4567889999876 47899999999999754355565 7776555 99999999999999999988764
No 41
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.86 E-value=1.7e-08 Score=78.19 Aligned_cols=138 Identities=16% Similarity=0.300 Sum_probs=100.6
Q ss_pred ccCCCCHHhHHHHHHHhcccCCHHHHHHHHHHHhhhcCCCCCCcCHHHhcCh-------------hHHHHHHHHhcc---
Q 030919 4 ASSMLTQYDIEEVQQHCNHAFSQQEIVSLYERFCQLDRNNGGFISAEEFLSV-------------PEFARLLRMVDG--- 67 (169)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~l~~~el~~~-------------~~~~~~~~~~~~--- 67 (169)
.+.+|+-.++.+.+..++ +++. ..-|.++|+..+|.|+..+|... ..+.++-+.++.
T Consensus 299 g~~kLs~deF~~F~e~Lq-----~Eil--~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~~~ 371 (489)
T KOG2643|consen 299 GNGKLSIDEFLKFQENLQ-----EEIL--ELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDDGK 371 (489)
T ss_pred CCccccHHHHHHHHHHHH-----HHHH--HHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCCCC
Confidence 345688888888888843 4443 44589999999999999999987 012233333332
Q ss_pred -CCHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCCcc
Q 030919 68 -LNFKEFVAFLSAFSPHATLHQKIEFIFKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKDSLM 146 (169)
Q Consensus 68 -i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i 146 (169)
|++.||..+...+.. -..+..|...| ..-.+.|+..+|+++.....|.++++.-++- +|..+|.|+||.+
T Consensus 372 gISl~Ef~~Ff~Fl~~----l~dfd~Al~fy-~~Ag~~i~~~~f~raa~~vtGveLSdhVvdv----vF~IFD~N~Dg~L 442 (489)
T KOG2643|consen 372 GISLQEFKAFFRFLNN----LNDFDIALRFY-HMAGASIDEKTFQRAAKVVTGVELSDHVVDV----VFTIFDENNDGTL 442 (489)
T ss_pred CcCHHHHHHHHHHHhh----hhHHHHHHHHH-HHcCCCCCHHHHHHHHHHhcCcccccceeee----EEEEEccCCCCcc
Confidence 999999998876531 13333333333 2345789999999999988788998875444 4999999999999
Q ss_pred cHHHHHHHhcc
Q 030919 147 ILSDFVKILGN 157 (169)
Q Consensus 147 ~~~eF~~~l~~ 157 (169)
+++||+.++++
T Consensus 443 S~~EFl~Vmk~ 453 (489)
T KOG2643|consen 443 SHKEFLAVMKR 453 (489)
T ss_pred cHHHHHHHHHH
Confidence 99999998875
No 42
>PF14658 EF-hand_9: EF-hand domain
Probab=98.75 E-value=4.9e-08 Score=56.83 Aligned_cols=62 Identities=21% Similarity=0.432 Sum_probs=55.2
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCC-CcccHHHHHHHhcc
Q 030919 92 FIFKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKD-SLMILSDFVKILGN 157 (169)
Q Consensus 92 ~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~d-g~i~~~eF~~~l~~ 157 (169)
.+|..||.++.|.|....+...|+.+.+..+++++++.+ .+++|+++. |.|+++.|+..|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l----~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDL----INELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHH----HHHhCCCCCCceEeHHHHHHHHHH
Confidence 479999999999999999999999984448888887777 899999998 99999999998874
No 43
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.73 E-value=3.5e-07 Score=79.92 Aligned_cols=135 Identities=21% Similarity=0.375 Sum_probs=108.3
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHhhhcCCCCCCcCHHHhcCh-----------------hHHHHHHHHhcc-----CCHH
Q 030919 14 EEVQQHCNHAFSQQEIVSLYERFCQLDRNNGGFISAEEFLSV-----------------PEFARLLRMVDG-----LNFK 71 (169)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~l~~~el~~~-----------------~~~~~~~~~~~~-----i~~~ 71 (169)
+.++....+++|++++.++..+|+.||.+.+|+++..+|..| |++.+++..+|+ |+..
T Consensus 2237 QqIqarn~~GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~ 2316 (2399)
T KOG0040|consen 2237 QQIQARNHNGVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQ 2316 (2399)
T ss_pred HHHHhhccCCCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHH
Confidence 355556668899999999999999999999999999999988 688899999997 9999
Q ss_pred HHHHHHHhhC-CCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCC----CCCcc
Q 030919 72 EFVAFLSAFS-PHATLHQKIEFIFKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYT----KDSLM 146 (169)
Q Consensus 72 ef~~~~~~~~-~~~~~~~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~----~dg~i 146 (169)
+|+.+|.... ..-...+.+.-+|+.+|. +..+|+.+++. .++++++++-++..|-..++.. -.+.+
T Consensus 2317 dY~afmi~~ETeNI~s~~eIE~AfraL~a-~~~yvtke~~~--------~~ltreqaefc~s~m~~~~e~~~~~s~q~~l 2387 (2399)
T KOG0040|consen 2317 DYMAFMISKETENILSSEEIEDAFRALDA-GKPYVTKEELY--------QNLTREQAEFCMSKMKPYAETSSGRSDQVAL 2387 (2399)
T ss_pred HHHHHHHhcccccccchHHHHHHHHHhhc-CCccccHHHHH--------hcCCHHHHHHHHHHhhhhcccccCCCccccc
Confidence 9999887633 233344588999999998 88899998876 3477888887777776666663 22478
Q ss_pred cHHHHHHHhcc
Q 030919 147 ILSDFVKILGN 157 (169)
Q Consensus 147 ~~~eF~~~l~~ 157 (169)
.|.+|++-+..
T Consensus 2388 ~y~dfv~sl~~ 2398 (2399)
T KOG0040|consen 2388 DYKDFVNSLFV 2398 (2399)
T ss_pred cHHHHHHHHhc
Confidence 99999887643
No 44
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.72 E-value=1.3e-07 Score=63.66 Aligned_cols=75 Identities=16% Similarity=0.283 Sum_probs=62.0
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHH-----------------------------HHHHHHhh
Q 030919 88 QKIEFIFKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQV-----------------------------LTDVLDEA 138 (169)
Q Consensus 88 ~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~ 138 (169)
+.++.+|.+.|+|++|.|.+++|+.++..+ |...++++++.| |...|..+
T Consensus 32 qEfKEAF~~mDqnrDG~IdkeDL~d~~aSl-Gk~~~d~elDaM~~Ea~gPINft~FLTmfGekL~gtdpe~~I~~AF~~F 110 (171)
T KOG0031|consen 32 QEFKEAFNLMDQNRDGFIDKEDLRDMLASL-GKIASDEELDAMMKEAPGPINFTVFLTMFGEKLNGTDPEEVILNAFKTF 110 (171)
T ss_pred HHHHHHHHHHhccCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHHhCCCCeeHHHHHHHHHHHhcCCCHHHHHHHHHHhc
Confidence 567889999999999999999999998887 777777776555 44578889
Q ss_pred CCCCCCcccHHHHHHHhcccCCcee
Q 030919 139 GYTKDSLMILSDFVKILGNSGLKME 163 (169)
Q Consensus 139 d~~~dg~i~~~eF~~~l~~~~~~~~ 163 (169)
|.++.|+|.-+.+..+|...+-.++
T Consensus 111 D~~~~G~I~~d~lre~Ltt~gDr~~ 135 (171)
T KOG0031|consen 111 DDEGSGKIDEDYLRELLTTMGDRFT 135 (171)
T ss_pred CccCCCccCHHHHHHHHHHhcccCC
Confidence 9999999999999999988776443
No 45
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.65 E-value=2.2e-07 Score=58.96 Aligned_cols=70 Identities=16% Similarity=0.234 Sum_probs=58.2
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCCCcCHHHhcChhHHHHHHHHhccCCHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCCCC
Q 030919 23 AFSQQEIVSLYERFCQLDRNNGGFISAEEFLSVPEFARLLRMVDGLNFKEFVAFLSAFSPHATLHQKIEFIFKVYDSDGN 102 (169)
Q Consensus 23 ~~~~~~~~~~~~~F~~~D~~~~g~l~~~el~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~ 102 (169)
++|+.++..++.+|..+|.+++|.|+.+++..+.. . .+...+.+..+|+.+|.+++
T Consensus 3 ~ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~---------------------~---~~~~~~ev~~i~~~~d~~~~ 58 (96)
T smart00027 3 AISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILL---------------------K---SGLPQTLLAKIWNLADIDND 58 (96)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHH---------------------H---cCCCHHHHHHHHHHhcCCCC
Confidence 47899999999999999999999999999885421 1 11234678899999999999
Q ss_pred CcccHHHHHHHHHH
Q 030919 103 GKVTFTDMLDVLRD 116 (169)
Q Consensus 103 g~Is~~e~~~~l~~ 116 (169)
|.|+++||..++..
T Consensus 59 g~I~~~eF~~~~~~ 72 (96)
T smart00027 59 GELDKDEFALAMHL 72 (96)
T ss_pred CCcCHHHHHHHHHH
Confidence 99999999988864
No 46
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.61 E-value=1e-06 Score=59.82 Aligned_cols=108 Identities=16% Similarity=0.240 Sum_probs=80.9
Q ss_pred CCcCHHHhcChhHHHHHHHHhcc-----CCHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhhC
Q 030919 45 GFISAEEFLSVPEFARLLRMVDG-----LNFKEFVAFLSAFSPHATLHQKIEFIFKVYDSDGNGKVTFTDMLDVLRDLTG 119 (169)
Q Consensus 45 g~l~~~el~~~~~~~~~~~~~~~-----i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~ 119 (169)
..++.++=. ++...|..++. |+..++-..+.++. -....+.+..+..-+|+++.|.|++++|+.++....+
T Consensus 25 ~~l~~~q~q---~i~e~f~lfd~~~~g~iD~~EL~vAmralG-FE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~ 100 (172)
T KOG0028|consen 25 SELTEEQKQ---EIKEAFELFDPDMAGKIDVEELKVAMRALG-FEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLG 100 (172)
T ss_pred ccccHHHHh---hHHHHHHhhccCCCCcccHHHHHHHHHHcC-CCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHh
Confidence 344444444 33444555554 99999966666542 3344567788889999999999999999999876557
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhcccCC
Q 030919 120 TFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILGNSGL 160 (169)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~~ 160 (169)
..-+.+++... |+.+|.+++|+|++.+|+.++..-+.
T Consensus 101 e~dt~eEi~~a----frl~D~D~~Gkis~~~lkrvakeLge 137 (172)
T KOG0028|consen 101 ERDTKEEIKKA----FRLFDDDKTGKISQRNLKRVAKELGE 137 (172)
T ss_pred ccCcHHHHHHH----HHcccccCCCCcCHHHHHHHHHHhCc
Confidence 77788885555 99999999999999999988876554
No 47
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.60 E-value=7.5e-08 Score=47.20 Aligned_cols=28 Identities=29% Similarity=0.795 Sum_probs=25.7
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHh
Q 030919 90 IEFIFKVYDSDGNGKVTFTDMLDVLRDL 117 (169)
Q Consensus 90 ~~~~F~~~D~~~~g~Is~~e~~~~l~~~ 117 (169)
++.+|+.+|+|++|+|+.+||..++.++
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 6789999999999999999999998763
No 48
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.54 E-value=6.6e-07 Score=55.87 Aligned_cols=71 Identities=18% Similarity=0.317 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhhhcC-CCCCCcCHHHhcChhHHHHHHHHhccCCHHHHHHHHHhhCCCCCHH-HHHHHHHHHhCCCCCC
Q 030919 26 QQEIVSLYERFCQLDR-NNGGFISAEEFLSVPEFARLLRMVDGLNFKEFVAFLSAFSPHATLH-QKIEFIFKVYDSDGNG 103 (169)
Q Consensus 26 ~~~~~~~~~~F~~~D~-~~~g~l~~~el~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~-~~~~~~F~~~D~~~~g 103 (169)
+..+..+..+|+.||+ +++|+|+.++|+.+..-. +... ... ..+..+++..|.|++|
T Consensus 4 E~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~e-----------------lg~~----ls~~~~v~~mi~~~D~d~DG 62 (89)
T cd05022 4 EKAIETLVSNFHKASVKGGKESLTASEFQELLTQQ-----------------LPHL----LKDVEGLEEKMKNLDVNQDS 62 (89)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHH-----------------hhhh----ccCHHHHHHHHHHhCCCCCC
Confidence 3557788999999999 999999999999653110 0000 111 5788999999999999
Q ss_pred cccHHHHHHHHHHh
Q 030919 104 KVTFTDMLDVLRDL 117 (169)
Q Consensus 104 ~Is~~e~~~~l~~~ 117 (169)
.|+++||..++..+
T Consensus 63 ~I~F~EF~~l~~~l 76 (89)
T cd05022 63 KLSFEEFWELIGEL 76 (89)
T ss_pred CCcHHHHHHHHHHH
Confidence 99999999888765
No 49
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.52 E-value=4.8e-07 Score=63.60 Aligned_cols=66 Identities=20% Similarity=0.389 Sum_probs=55.3
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhccc
Q 030919 88 QKIEFIFKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILGNS 158 (169)
Q Consensus 88 ~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~ 158 (169)
..+..+|+.||.+.||+|++.|++.++.++ |.+-|.--++.+ +...|.|.||+|+|.||+-....+
T Consensus 99 k~~~~~Fk~yDe~rDgfIdl~ELK~mmEKL-gapQTHL~lK~m----ikeVded~dgklSfreflLIfrka 164 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGFIDLMELKRMMEKL-GAPQTHLGLKNM----IKEVDEDFDGKLSFREFLLIFRKA 164 (244)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHh-CCchhhHHHHHH----HHHhhcccccchhHHHHHHHHHHH
Confidence 567889999999999999999999999998 766555554444 888899999999999998766543
No 50
>PLN02964 phosphatidylserine decarboxylase
Probab=98.45 E-value=4.7e-06 Score=69.08 Aligned_cols=89 Identities=21% Similarity=0.276 Sum_probs=62.6
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCCCcCHHHhcChhHHHHHHHHhccCCHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCCCC
Q 030919 23 AFSQQEIVSLYERFCQLDRNNGGFISAEEFLSVPEFARLLRMVDGLNFKEFVAFLSAFSPHATLHQKIEFIFKVYDSDGN 102 (169)
Q Consensus 23 ~~~~~~~~~~~~~F~~~D~~~~g~l~~~el~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~ 102 (169)
..++.+...+..+|..+|.+++|.|+.+||. .++..+. ....++.+..+|+.+|.+++
T Consensus 172 ~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl---------------------~lL~~lg-~~~seEEL~eaFk~fDkDgd 229 (644)
T PLN02964 172 DPVETERSFARRILAIVDYDEDGQLSFSEFS---------------------DLIKAFG-NLVAANKKEELFKAADLNGD 229 (644)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCeEcHHHHH---------------------HHHHHhc-cCCCHHHHHHHHHHhCCCCC
Confidence 3455555557777777888888875555554 4444432 34567789999999999999
Q ss_pred CcccHHHHHHHHHHh------------hCCCCCH-HHHHHHHHH
Q 030919 103 GKVTFTDMLDVLRDL------------TGTFISE-KQREQVLTD 133 (169)
Q Consensus 103 g~Is~~e~~~~l~~~------------~~~~~~~-~~~~~~~~~ 133 (169)
|.|+.+||..++... .+..++. +++..++..
T Consensus 230 G~Is~dEL~~vL~~~~~~~~~~~~cp~cg~~l~~~~~~~~iiH~ 273 (644)
T PLN02964 230 GVVTIDELAALLALQQEQEPIINNCPVCGEALGVSDKLNAMIHM 273 (644)
T ss_pred CcCCHHHHHHHHHhcccCcchhhhchhhcCcccchhhHHHHHHH
Confidence 999999999999872 1445555 566666643
No 51
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.44 E-value=2.2e-06 Score=54.09 Aligned_cols=74 Identities=16% Similarity=0.228 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhhhc-CCCCC-CcCHHHhcChhHHHHHHHHhccCCHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCCCCCc
Q 030919 27 QEIVSLYERFCQLD-RNNGG-FISAEEFLSVPEFARLLRMVDGLNFKEFVAFLSAFSPHATLHQKIEFIFKVYDSDGNGK 104 (169)
Q Consensus 27 ~~~~~~~~~F~~~D-~~~~g-~l~~~el~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~ 104 (169)
..+..+..+|+.+| .+++| +|+.++|+.+..- .+............+..+++.+|.|++|.
T Consensus 7 ~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~-----------------~~~~~~~~~~~~~~v~~i~~elD~n~dG~ 69 (93)
T cd05026 7 GAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQR-----------------ELTDFLSSQKDPMLVDKIMNDLDSNKDNE 69 (93)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHH-----------------HhHHhcccccCHHHHHHHHHHhCCCCCCC
Confidence 45667889999999 78998 5999999965311 00000112224567899999999999999
Q ss_pred ccHHHHHHHHHHh
Q 030919 105 VTFTDMLDVLRDL 117 (169)
Q Consensus 105 Is~~e~~~~l~~~ 117 (169)
|+++||..++..+
T Consensus 70 Idf~EF~~l~~~l 82 (93)
T cd05026 70 VDFNEFVVLVAAL 82 (93)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999998765
No 52
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.43 E-value=2.3e-06 Score=53.35 Aligned_cols=75 Identities=19% Similarity=0.379 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhhhc-CCCCC-CcCHHHhcChhHHHHHHHHhccCCHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCCCCC
Q 030919 26 QQEIVSLYERFCQLD-RNNGG-FISAEEFLSVPEFARLLRMVDGLNFKEFVAFLSAFSPHATLHQKIEFIFKVYDSDGNG 103 (169)
Q Consensus 26 ~~~~~~~~~~F~~~D-~~~~g-~l~~~el~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g 103 (169)
+..+..++.+|+.+| .+++| .|+.++|+.+..- +|-.+ .+....+..+..+++..|.|++|
T Consensus 4 e~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~-------------~~~~~----lg~~~~~~~v~~~i~~~D~n~dG 66 (88)
T cd05027 4 EKAMVALIDVFHQYSGREGDKHKLKKSELKELINN-------------ELSHF----LEEIKEQEVVDKVMETLDSDGDG 66 (88)
T ss_pred HHHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHH-------------HhHHH----hcCCCCHHHHHHHHHHhCCCCCC
Confidence 345778899999998 79999 5999999976321 11111 22334556799999999999999
Q ss_pred cccHHHHHHHHHHh
Q 030919 104 KVTFTDMLDVLRDL 117 (169)
Q Consensus 104 ~Is~~e~~~~l~~~ 117 (169)
.|++++|..++...
T Consensus 67 ~v~f~eF~~li~~~ 80 (88)
T cd05027 67 ECDFQEFMAFVAMV 80 (88)
T ss_pred cCcHHHHHHHHHHH
Confidence 99999998887643
No 53
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.40 E-value=1.2e-06 Score=58.09 Aligned_cols=69 Identities=20% Similarity=0.340 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCC--CCCcccHHHHHHHhcc
Q 030919 84 ATLHQKIEFIFKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYT--KDSLMILSDFVKILGN 157 (169)
Q Consensus 84 ~~~~~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~--~dg~i~~~eF~~~l~~ 157 (169)
.+....++.+|..||..++|.|+..+..++++.+ |.++++.++... +...+.+ +--+|+|++|+-++.+
T Consensus 7 ~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRal-G~nPT~aeV~k~----l~~~~~~~~~~~rl~FE~fLpm~q~ 77 (152)
T KOG0030|consen 7 PDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRAL-GQNPTNAEVLKV----LGQPKRREMNVKRLDFEEFLPMYQQ 77 (152)
T ss_pred cchHHHHHHHHHHHhccCcccccHHHHHHHHHHh-cCCCcHHHHHHH----HcCcccchhhhhhhhHHHHHHHHHH
Confidence 3455789999999999999999999999999998 999999996555 7776655 3357888888766543
No 54
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.40 E-value=1.7e-06 Score=56.67 Aligned_cols=66 Identities=20% Similarity=0.192 Sum_probs=53.5
Q ss_pred CCHHHHHHHHHHHhhhcCCCCCCcCHHHhcChhHHHHHHHHhccCCHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCCCCC
Q 030919 24 FSQQEIVSLYERFCQLDRNNGGFISAEEFLSVPEFARLLRMVDGLNFKEFVAFLSAFSPHATLHQKIEFIFKVYDSDGNG 103 (169)
Q Consensus 24 ~~~~~~~~~~~~F~~~D~~~~g~l~~~el~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g 103 (169)
+.......+.-.|..+|.|+||.|+.+||..+. ....+..+...|..+|.|++|
T Consensus 42 ~~~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--------------------------l~~~e~~~~~f~~~~D~n~Dg 95 (116)
T cd00252 42 LYPMCKDPVGWMFNQLDGNYDGKLSHHELAPIR--------------------------LDPNEHCIKPFFESCDLDKDG 95 (116)
T ss_pred hhHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH--------------------------ccchHHHHHHHHHHHCCCCCC
Confidence 345667788999999999999999999998321 112246678899999999999
Q ss_pred cccHHHHHHHHH
Q 030919 104 KVTFTDMLDVLR 115 (169)
Q Consensus 104 ~Is~~e~~~~l~ 115 (169)
.||.+|+...+.
T Consensus 96 ~IS~~Ef~~cl~ 107 (116)
T cd00252 96 SISLDEWCYCFI 107 (116)
T ss_pred CCCHHHHHHHHh
Confidence 999999999983
No 55
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.38 E-value=5.4e-06 Score=52.11 Aligned_cols=74 Identities=20% Similarity=0.360 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhhhc-CCCCCC-cCHHHhcChhHHHHHHHHhccCCHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCCCCCc
Q 030919 27 QEIVSLYERFCQLD-RNNGGF-ISAEEFLSVPEFARLLRMVDGLNFKEFVAFLSAFSPHATLHQKIEFIFKVYDSDGNGK 104 (169)
Q Consensus 27 ~~~~~~~~~F~~~D-~~~~g~-l~~~el~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~ 104 (169)
..+..++++|+.+| .+++|+ |+.++|+.+..- .+....+.....+.+..+|+.+|.+++|.
T Consensus 6 ~~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~-----------------~lg~~~~~~~s~~~v~~i~~~~D~d~~G~ 68 (92)
T cd05025 6 TAMETLINVFHAHSGKEGDKYKLSKKELKDLLQT-----------------ELSDFLDAQKDADAVDKIMKELDENGDGE 68 (92)
T ss_pred HHHHHHHHHHHHHhcccCCCCeECHHHHHHHHHH-----------------HHHHHccCCCCHHHHHHHHHHHCCCCCCc
Confidence 34567899999997 999995 999999865311 01111112234567899999999999999
Q ss_pred ccHHHHHHHHHHh
Q 030919 105 VTFTDMLDVLRDL 117 (169)
Q Consensus 105 Is~~e~~~~l~~~ 117 (169)
|++++|..++..+
T Consensus 69 I~f~eF~~l~~~~ 81 (92)
T cd05025 69 VDFQEFVVLVAAL 81 (92)
T ss_pred CcHHHHHHHHHHH
Confidence 9999999888764
No 56
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.38 E-value=4.7e-06 Score=51.91 Aligned_cols=65 Identities=8% Similarity=0.210 Sum_probs=48.5
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhh----CCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhcc
Q 030919 88 QKIEFIFKVYDSDGNGKVTFTDMLDVLRDLT----GTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILGN 157 (169)
Q Consensus 88 ~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~ 157 (169)
..+..+|..|. .+.+.++..||+.++..-+ ...-.+.. +++++..+|.|+||.|+|.||+.++..
T Consensus 8 ~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~----vd~im~~LD~n~Dg~vdF~EF~~Lv~~ 76 (91)
T cd05024 8 EKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMA----VDKIMKDLDDCRDGKVGFQSFFSLIAG 76 (91)
T ss_pred HHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHH----HHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 44667788887 3456999999999996422 33334555 445599999999999999999987653
No 57
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.37 E-value=3.9e-06 Score=52.26 Aligned_cols=75 Identities=21% Similarity=0.344 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhhhcC--CCCCCcCHHHhcChhHHHHHHHHhccCCHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCCCCC
Q 030919 26 QQEIVSLYERFCQLDR--NNGGFISAEEFLSVPEFARLLRMVDGLNFKEFVAFLSAFSPHATLHQKIEFIFKVYDSDGNG 103 (169)
Q Consensus 26 ~~~~~~~~~~F~~~D~--~~~g~l~~~el~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g 103 (169)
++++..++.+|..+|+ +++|+|+.++|..+... .+............+..++..+|.+++|
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~-----------------~~g~~~~~~~~~~ei~~i~~~~d~~~~g 66 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLET-----------------ELPNFLKNQKDPEAVDKIMKDLDVNKDG 66 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHH-----------------HhhhhccCCCCHHHHHHHHHHhccCCCC
Confidence 5678889999999999 89999999998855311 0000000112356788999999999999
Q ss_pred cccHHHHHHHHHHh
Q 030919 104 KVTFTDMLDVLRDL 117 (169)
Q Consensus 104 ~Is~~e~~~~l~~~ 117 (169)
.|++++|..++...
T Consensus 67 ~I~f~eF~~~~~~~ 80 (88)
T cd00213 67 KVDFQEFLVLIGKL 80 (88)
T ss_pred cCcHHHHHHHHHHH
Confidence 99999999988754
No 58
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.32 E-value=7.3e-07 Score=43.66 Aligned_cols=27 Identities=15% Similarity=0.309 Sum_probs=23.6
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHhcc
Q 030919 131 LTDVLDEAGYTKDSLMILSDFVKILGN 157 (169)
Q Consensus 131 ~~~~~~~~d~~~dg~i~~~eF~~~l~~ 157 (169)
++.+|+.+|.|+||.|+++||..++++
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 345599999999999999999999864
No 59
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.30 E-value=1.2e-06 Score=43.62 Aligned_cols=29 Identities=34% Similarity=0.793 Sum_probs=25.2
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHH-Hh
Q 030919 89 KIEFIFKVYDSDGNGKVTFTDMLDVLR-DL 117 (169)
Q Consensus 89 ~~~~~F~~~D~~~~g~Is~~e~~~~l~-~~ 117 (169)
+++.+|+.+|.+++|.|+.+||.+++. ++
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~l 30 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSL 30 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhc
Confidence 367899999999999999999999998 44
No 60
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.29 E-value=1.3e-05 Score=62.58 Aligned_cols=118 Identities=21% Similarity=0.348 Sum_probs=84.9
Q ss_pred HHHHHHhhhcCCCCCCcCHHHhcChhHHH--------------------------H-HHHHhcc-----CCHHHHHHHHH
Q 030919 31 SLYERFCQLDRNNGGFISAEEFLSVPEFA--------------------------R-LLRMVDG-----LNFKEFVAFLS 78 (169)
Q Consensus 31 ~~~~~F~~~D~~~~g~l~~~el~~~~~~~--------------------------~-~~~~~~~-----i~~~ef~~~~~ 78 (169)
.+.-+|+.+|.|++|-|+.+||....++. . +...++. +++++|+.++.
T Consensus 234 ~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~e 313 (489)
T KOG2643|consen 234 NFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQE 313 (489)
T ss_pred cceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHHH
Confidence 35678999999999999999999872111 0 1111121 99999999987
Q ss_pred hhCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhc
Q 030919 79 AFSPHATLHQKIEFIFKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILG 156 (169)
Q Consensus 79 ~~~~~~~~~~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~ 156 (169)
.+. ++-++.-|..+|+..+|.|+..+|..++-.+.+.+.... ..+.+.+-+.++.+ +..|+++||.+++.
T Consensus 314 ~Lq-----~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k--~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~ 383 (489)
T KOG2643|consen 314 NLQ-----EEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKK--HKYLKRVKEKFKDD-GKGISLQEFKAFFR 383 (489)
T ss_pred HHH-----HHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhH--HHHHHHHHHhccCC-CCCcCHHHHHHHHH
Confidence 753 567788899999999999999999999987633333222 23456667777654 55789999876653
No 61
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.22 E-value=1.3e-05 Score=50.09 Aligned_cols=75 Identities=23% Similarity=0.389 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhh-hcCCCCC-CcCHHHhcChhHHHHHHHHhccCCHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCCCCC
Q 030919 26 QQEIVSLYERFCQ-LDRNNGG-FISAEEFLSVPEFARLLRMVDGLNFKEFVAFLSAFSPHATLHQKIEFIFKVYDSDGNG 103 (169)
Q Consensus 26 ~~~~~~~~~~F~~-~D~~~~g-~l~~~el~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g 103 (169)
+..+..+..+|+. .|.+++| .|+.+||..+..- ++-..+ ........+..+++.+|.|++|
T Consensus 5 e~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~-------------e~~~~~----~~~~~~~~~~~ll~~~D~d~DG 67 (89)
T cd05023 5 ERCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNT-------------ELASFT----KNQKDPGVLDRMMKKLDLNSDG 67 (89)
T ss_pred HHHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHH-------------hhhHhh----cCCCCHHHHHHHHHHcCCCCCC
Confidence 4557778899999 7787876 9999999876211 011111 1233456788899999999999
Q ss_pred cccHHHHHHHHHHh
Q 030919 104 KVTFTDMLDVLRDL 117 (169)
Q Consensus 104 ~Is~~e~~~~l~~~ 117 (169)
.|+++||..++..+
T Consensus 68 ~I~f~EF~~l~~~l 81 (89)
T cd05023 68 QLDFQEFLNLIGGL 81 (89)
T ss_pred cCcHHHHHHHHHHH
Confidence 99999999988765
No 62
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.21 E-value=9.4e-06 Score=63.85 Aligned_cols=72 Identities=22% Similarity=0.386 Sum_probs=55.1
Q ss_pred CCHHHHHHHH-HhhCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCCcc
Q 030919 68 LNFKEFVAFL-SAFSPHATLHQKIEFIFKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKDSLM 146 (169)
Q Consensus 68 i~~~ef~~~~-~~~~~~~~~~~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i 146 (169)
..++.++... ....+.......+..+|+.+|.+++|.|+.+||. + + +.+|..+|.|+||.|
T Consensus 313 ~~L~~~i~~~~~~~~~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~-------~-------~----~~~F~~~D~d~DG~I 374 (391)
T PRK12309 313 ETLEKLLAHRLARLEGGEAFTHAAQEIFRLYDLDGDGFITREEWL-------G-------S----DAVFDALDLNHDGKI 374 (391)
T ss_pred HHHHHHHHHHHHHhhccChhhHHHHHHHHHhCCCCCCcCcHHHHH-------H-------H----HHHHHHhCCCCCCCC
Confidence 4445554422 2244456667889999999999999999999993 1 2 334999999999999
Q ss_pred cHHHHHHHhcc
Q 030919 147 ILSDFVKILGN 157 (169)
Q Consensus 147 ~~~eF~~~l~~ 157 (169)
+++||...+..
T Consensus 375 s~eEf~~~~~~ 385 (391)
T PRK12309 375 TPEEMRAGLGA 385 (391)
T ss_pred cHHHHHHHHHH
Confidence 99999998764
No 63
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.20 E-value=4.1e-06 Score=49.12 Aligned_cols=61 Identities=20% Similarity=0.269 Sum_probs=48.2
Q ss_pred HHHHhhhcCCCCCCcCHHHhcChhHHHHHHHHhccCCHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHH
Q 030919 33 YERFCQLDRNNGGFISAEEFLSVPEFARLLRMVDGLNFKEFVAFLSAFSPHATLHQKIEFIFKVYDSDGNGKVTFTDMLD 112 (169)
Q Consensus 33 ~~~F~~~D~~~~g~l~~~el~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~Is~~e~~~ 112 (169)
+.+|..+|++++|.|+.+++..+.. .. +...+.+..+|..+|.+++|.|+.+||..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~---------------------~~---g~~~~~~~~i~~~~d~~~~g~i~~~ef~~ 57 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLG---------------------KS---GLPRSVLAQIWDLADTDKDGKLDKEEFAI 57 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHH---------------------Hc---CCCHHHHHHHHHHhcCCCCCcCCHHHHHH
Confidence 5689999999999999998874421 11 12346788899999999999999999998
Q ss_pred HHHHh
Q 030919 113 VLRDL 117 (169)
Q Consensus 113 ~l~~~ 117 (169)
++...
T Consensus 58 ~~~~~ 62 (67)
T cd00052 58 AMHLI 62 (67)
T ss_pred HHHHH
Confidence 88654
No 64
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.19 E-value=2e-05 Score=49.69 Aligned_cols=73 Identities=23% Similarity=0.320 Sum_probs=53.7
Q ss_pred HHHHHHHHHhhhcC-CC-CCCcCHHHhcChhHHHHHHHHhccCCHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCCCCCcc
Q 030919 28 EIVSLYERFCQLDR-NN-GGFISAEEFLSVPEFARLLRMVDGLNFKEFVAFLSAFSPHATLHQKIEFIFKVYDSDGNGKV 105 (169)
Q Consensus 28 ~~~~~~~~F~~~D~-~~-~g~l~~~el~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~I 105 (169)
-+..+..+|..+|. ++ +|+|+.++|+.+..- .+....+.....+.+..+++.+|.+++|.|
T Consensus 6 ~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~-----------------~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I 68 (94)
T cd05031 6 AMESLILTFHRYAGKDGDKNTLSRKELKKLMEK-----------------ELSEFLKNQKDPMAVDKIMKDLDQNRDGKV 68 (94)
T ss_pred HHHHHHHHHHHHhccCCCCCeECHHHHHHHHHH-----------------HhHHHhhccccHHHHHHHHHHhCCCCCCcC
Confidence 35678899999997 87 699999999865310 000001122345678899999999999999
Q ss_pred cHHHHHHHHHHh
Q 030919 106 TFTDMLDVLRDL 117 (169)
Q Consensus 106 s~~e~~~~l~~~ 117 (169)
++++|..++...
T Consensus 69 ~f~eF~~l~~~~ 80 (94)
T cd05031 69 NFEEFVSLVAGL 80 (94)
T ss_pred cHHHHHHHHHHH
Confidence 999999888654
No 65
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.18 E-value=1.5e-05 Score=51.14 Aligned_cols=65 Identities=17% Similarity=0.231 Sum_probs=53.0
Q ss_pred CCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhc
Q 030919 84 ATLHQKIEFIFKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILG 156 (169)
Q Consensus 84 ~~~~~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~ 156 (169)
.........+|...|. ++|.|+.++.+.++... +++.+.+..+ +...|.+++|+++++||+-++.
T Consensus 6 ~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S---~L~~~~L~~I----W~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 6 PEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKS---GLPRDVLAQI----WNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp CCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHT---TSSHHHHHHH----HHHH-SSSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHc---CCCHHHHHHH----HhhhcCCCCCcCCHHHHHHHHH
Confidence 3455678889999885 68999999999998754 5888886666 9999999999999999986554
No 66
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.13 E-value=3.1e-05 Score=60.19 Aligned_cols=144 Identities=17% Similarity=0.211 Sum_probs=100.8
Q ss_pred CCCCHHhHHHHHHHhcccCCHHHHHHHHHHHhhhcCCCCCCcCHHHhcCh-----hHHHHHHHHhcc-----CCHHHHHH
Q 030919 6 SMLTQYDIEEVQQHCNHAFSQQEIVSLYERFCQLDRNNGGFISAEEFLSV-----PEFARLLRMVDG-----LNFKEFVA 75 (169)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~l~~~el~~~-----~~~~~~~~~~~~-----i~~~ef~~ 75 (169)
+.++-.++.+....+.+. ...-+.....|...|.|.+|+++.++|++. .++.++|..+|. |+..|.-.
T Consensus 29 g~~d~~~l~k~~~~l~~~--~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E~~l~~~F~~iD~~hdG~i~~~Ei~~ 106 (463)
T KOG0036|consen 29 GQVDLDQLEKGLEKLDHP--KPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKELELYRIFQSIDLEHDGKIDPNEIWR 106 (463)
T ss_pred CceeHHHHHHHHHhcCCC--CCchHHHHHHHHhcccCcCCcccHHHHHHHHHHhHHHHHHHHhhhccccCCccCHHHHHH
Confidence 344444454444554433 233445678899999999999999999997 356688888887 88888877
Q ss_pred HHHhhCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHH--HhhCCCCCCcccHHHHHH
Q 030919 76 FLSAFSPHATLHQKIEFIFKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVL--DEAGYTKDSLMILSDFVK 153 (169)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~d~~~dg~i~~~eF~~ 153 (169)
.+.... -.-..+++..+|+..|++|++.|+.+|.++.+... + .+.+++++...- ..+|.+.+..|. ++|..
T Consensus 107 ~l~~~g-i~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~--p---~s~i~di~~~W~h~~~idigE~~~iP-dg~s~ 179 (463)
T KOG0036|consen 107 YLKDLG-IQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLY--P---ESDLEDIYDFWRHVLLIDIGEDAVLP-DGDSK 179 (463)
T ss_pred HHHHhC-CccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcC--C---hhHHHHHHHhhhhheEEEccccccCC-cchHH
Confidence 777654 44566788889999999999999999999988543 2 445555433321 235777777776 66665
Q ss_pred Hhccc
Q 030919 154 ILGNS 158 (169)
Q Consensus 154 ~l~~~ 158 (169)
-....
T Consensus 180 ~e~~~ 184 (463)
T KOG0036|consen 180 LENDS 184 (463)
T ss_pred HHhcc
Confidence 55444
No 67
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.11 E-value=3.6e-05 Score=54.36 Aligned_cols=108 Identities=24% Similarity=0.330 Sum_probs=76.9
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCCCcCHHHhcChhHHHHHHHHhccCCHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCCCC
Q 030919 23 AFSQQEIVSLYERFCQLDRNNGGFISAEEFLSVPEFARLLRMVDGLNFKEFVAFLSAFSPHATLHQKIEFIFKVYDSDGN 102 (169)
Q Consensus 23 ~~~~~~~~~~~~~F~~~D~~~~g~l~~~el~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~ 102 (169)
.|+..+|+++..+|..+|.+.||+|+..+|+.+.+- .+....+-.++.+....|.|.+
T Consensus 92 eFsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEK----------------------LgapQTHL~lK~mikeVded~d 149 (244)
T KOG0041|consen 92 EFSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEK----------------------LGAPQTHLGLKNMIKEVDEDFD 149 (244)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHH----------------------hCCchhhHHHHHHHHHhhcccc
Confidence 478899999999999999999999999999866421 1233344567788888999999
Q ss_pred CcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHH
Q 030919 103 GKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVK 153 (169)
Q Consensus 103 g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~ 153 (169)
|.||+.||--++.......+..+.....+.. ..+.|...-|...-..|-.
T Consensus 150 gklSfreflLIfrkaaagEL~~ds~~~~LAr-~~eVDVskeGV~GAknFFe 199 (244)
T KOG0041|consen 150 GKLSFREFLLIFRKAAAGELQEDSGLLRLAR-LSEVDVSKEGVSGAKNFFE 199 (244)
T ss_pred cchhHHHHHHHHHHHhccccccchHHHHHHH-hcccchhhhhhhhHHHHHH
Confidence 9999999988887665555554433222122 2346777777766666643
No 68
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.10 E-value=4.1e-05 Score=47.71 Aligned_cols=73 Identities=16% Similarity=0.190 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhhhcC-CC-CCCcCHHHhcChhHHHHHHHHhccCCHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCCCCC
Q 030919 26 QQEIVSLYERFCQLDR-NN-GGFISAEEFLSVPEFARLLRMVDGLNFKEFVAFLSAFSPHATLHQKIEFIFKVYDSDGNG 103 (169)
Q Consensus 26 ~~~~~~~~~~F~~~D~-~~-~g~l~~~el~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g 103 (169)
++.+..+-.+|+.+|. ++ +|+|+.++|+.+..-. .. .+.....+.+..+++.+|.+++|
T Consensus 6 e~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~------------------~~-lg~k~t~~ev~~m~~~~D~d~dG 66 (88)
T cd05029 6 DQAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKE------------------LT-IGSKLQDAEIAKLMEDLDRNKDQ 66 (88)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHH------------------Hh-cCCCCCHHHHHHHHHHhcCCCCC
Confidence 4556778889999998 66 8999999998653100 00 12334567889999999999999
Q ss_pred cccHHHHHHHHHHh
Q 030919 104 KVTFTDMLDVLRDL 117 (169)
Q Consensus 104 ~Is~~e~~~~l~~~ 117 (169)
.|+++||..++..+
T Consensus 67 ~Idf~EFv~lm~~l 80 (88)
T cd05029 67 EVNFQEYVTFLGAL 80 (88)
T ss_pred CCcHHHHHHHHHHH
Confidence 99999999888765
No 69
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.09 E-value=5.2e-06 Score=39.13 Aligned_cols=25 Identities=28% Similarity=0.771 Sum_probs=22.2
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHH
Q 030919 90 IEFIFKVYDSDGNGKVTFTDMLDVL 114 (169)
Q Consensus 90 ~~~~F~~~D~~~~g~Is~~e~~~~l 114 (169)
++.+|+.+|.|++|.|+.+|+..++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4678999999999999999999864
No 70
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.08 E-value=3.9e-05 Score=54.38 Aligned_cols=100 Identities=22% Similarity=0.324 Sum_probs=74.3
Q ss_pred CCcCHHHhcChhHHHHHHHHhcc------CCHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCCCCCc-ccHHHHHHHHHHh
Q 030919 45 GFISAEEFLSVPEFARLLRMVDG------LNFKEFVAFLSAFSPHATLHQKIEFIFKVYDSDGNGK-VTFTDMLDVLRDL 117 (169)
Q Consensus 45 g~l~~~el~~~~~~~~~~~~~~~------i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~-Is~~e~~~~l~~~ 117 (169)
+..+.+|+..+ ...|..++. ++.++|..+.... ...-...++..++.+++|. |++++|.+++..+
T Consensus 25 ~~fs~~EI~~L---~~rF~kl~~~~~~g~lt~eef~~i~~~~-----~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f 96 (187)
T KOG0034|consen 25 TQFSANEIERL---YERFKKLDRNNGDGYLTKEEFLSIPELA-----LNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVF 96 (187)
T ss_pred cccCHHHHHHH---HHHHHHhccccccCccCHHHHHHHHHHh-----cCcHHHHHHHHHhccCCCCccCHHHHHHHHhhh
Confidence 34555555533 344555544 8999999887332 2256788999999999999 9999999999987
Q ss_pred hCCCCCHH-HHHHHHHHHHHhhCCCCCCcccHHHHHHHhcc
Q 030919 118 TGTFISEK-QREQVLTDVLDEAGYTKDSLMILSDFVKILGN 157 (169)
Q Consensus 118 ~~~~~~~~-~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~ 157 (169)
.+.-+.+ . ++-.|+.+|.+++|.|+.+++..++..
T Consensus 97 -~~~~~~~~K----l~faF~vYD~~~~G~I~reel~~iv~~ 132 (187)
T KOG0034|consen 97 -SPKASKREK----LRFAFRVYDLDGDGFISREELKQILRM 132 (187)
T ss_pred -cCCccHHHH----HHHHHHHhcCCCCCcCcHHHHHHHHHH
Confidence 5554444 3 455699999999999999999877653
No 71
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.04 E-value=1.7e-05 Score=44.61 Aligned_cols=48 Identities=21% Similarity=0.541 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHhhCCCC-CHHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q 030919 68 LNFKEFVAFLSAFSPHA-TLHQKIEFIFKVYDSDGNGKVTFTDMLDVLRD 116 (169)
Q Consensus 68 i~~~ef~~~~~~~~~~~-~~~~~~~~~F~~~D~~~~g~Is~~e~~~~l~~ 116 (169)
|+.++|..++..+ +.. ...+.+..+|..+|.+++|.|+.+||..++..
T Consensus 5 i~~~~~~~~l~~~-g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 5 ITREEFRRALSKL-GIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp EEHHHHHHHHHHT-TSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred ECHHHHHHHHHHh-CCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 5667777777443 334 56677999999999999999999999998864
No 72
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=4.2e-05 Score=49.22 Aligned_cols=64 Identities=23% Similarity=0.392 Sum_probs=54.3
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHHhh-----C----CCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHH
Q 030919 91 EFIFKVYDSDGNGKVTFTDMLDVLRDLT-----G----TFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKI 154 (169)
Q Consensus 91 ~~~F~~~D~~~~g~Is~~e~~~~l~~~~-----~----~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~ 154 (169)
-..|++.|.+++|.|+.-|+..++...- + +-.++.+++.+|+.+++..|.|+||.|+|.||...
T Consensus 70 fHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 70 FHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 4568999999999999999999987532 1 23567889999999999999999999999999864
No 73
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=97.99 E-value=0.00018 Score=57.31 Aligned_cols=92 Identities=26% Similarity=0.581 Sum_probs=73.4
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCCCcCHHHhcCh-----------hHHHHHHHHhcc------CCHHHHHHHHHhhCCCCC
Q 030919 23 AFSQQEIVSLYERFCQLDRNNGGFISAEEFLSV-----------PEFARLLRMVDG------LNFKEFVAFLSAFSPHAT 85 (169)
Q Consensus 23 ~~~~~~~~~~~~~F~~~D~~~~g~l~~~el~~~-----------~~~~~~~~~~~~------i~~~ef~~~~~~~~~~~~ 85 (169)
.-.++++..+...|...+.++..+.+.++|.+. +++.++...+.. |+|+||..+-..+| .
T Consensus 29 ra~~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC---~ 105 (694)
T KOG0751|consen 29 RADPKELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLC---A 105 (694)
T ss_pred cCChHHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhcc---C
Confidence 345666666666677788888889999999876 566777766654 99999998776655 4
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q 030919 86 LHQKIEFIFKVYDSDGNGKVTFTDMLDVLRDL 117 (169)
Q Consensus 86 ~~~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~ 117 (169)
.......+|..||+.++|.+|.+++.+++...
T Consensus 106 pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t 137 (694)
T KOG0751|consen 106 PDALFEVAFQLFDRLGNGEVSFEDVADIFGQT 137 (694)
T ss_pred chHHHHHHHHHhcccCCCceehHHHHHHHhcc
Confidence 46678899999999999999999999998753
No 74
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=97.95 E-value=7e-05 Score=42.39 Aligned_cols=61 Identities=28% Similarity=0.562 Sum_probs=46.6
Q ss_pred HHHHHhhhcCCCCCCcCHHHhcChhHHHHHHHHhccCCHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCCCCCcccHHHHH
Q 030919 32 LYERFCQLDRNNGGFISAEEFLSVPEFARLLRMVDGLNFKEFVAFLSAFSPHATLHQKIEFIFKVYDSDGNGKVTFTDML 111 (169)
Q Consensus 32 ~~~~F~~~D~~~~g~l~~~el~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~Is~~e~~ 111 (169)
+..+|..+|.+++|.|+.+++..+. .... .....+.+..+|..+|.+++|.|+.++|.
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l---------------------~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~ef~ 59 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAAL---------------------KSLG-EGLSEEEIDEMIREVDKDGDGKIDFEEFL 59 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHH---------------------HHhC-CCCCHHHHHHHHHHhCCCCCCeEeHHHHH
Confidence 4567888899999998888877542 2211 33455677889999999999999999998
Q ss_pred HHH
Q 030919 112 DVL 114 (169)
Q Consensus 112 ~~l 114 (169)
.++
T Consensus 60 ~~~ 62 (63)
T cd00051 60 ELM 62 (63)
T ss_pred HHh
Confidence 765
No 75
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.92 E-value=1.7e-05 Score=37.32 Aligned_cols=24 Identities=13% Similarity=0.358 Sum_probs=20.9
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHh
Q 030919 132 TDVLDEAGYTKDSLMILSDFVKIL 155 (169)
Q Consensus 132 ~~~~~~~d~~~dg~i~~~eF~~~l 155 (169)
+.+|..+|.|+||.|+++||.+++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHC
Confidence 345999999999999999998864
No 76
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.83 E-value=7.4e-06 Score=53.49 Aligned_cols=63 Identities=13% Similarity=0.264 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHH
Q 030919 85 TLHQKIEFIFKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKI 154 (169)
Q Consensus 85 ~~~~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~ 154 (169)
.....+.+.|..+|.|++|.|+..|+..+...+ .+.+.+ ++..++..|.|+||.|+..||..+
T Consensus 51 ~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l----~~~e~C---~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 51 ECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL----MPPEHC---ARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp GGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT----STTGGG---HHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred hhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH----hhhHHH---HHHHHHHcCCCCCCCCCHHHHccC
Confidence 445678899999999999999999999776433 333333 455599999999999999999753
No 77
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=97.82 E-value=5.1e-05 Score=57.37 Aligned_cols=113 Identities=18% Similarity=0.216 Sum_probs=88.4
Q ss_pred CCCCcCHHHhcCh---h---HHHHHHHHhcc-----CCHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCCCCCcccHHHHH
Q 030919 43 NGGFISAEEFLSV---P---EFARLLRMVDG-----LNFKEFVAFLSAFSPHATLHQKIEFIFKVYDSDGNGKVTFTDML 111 (169)
Q Consensus 43 ~~g~l~~~el~~~---~---~~~~~~~~~~~-----i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~Is~~e~~ 111 (169)
+.+.|...+|..- | .++.+|..+|. ++|.+++..+..+++.......++.+|++|+...||.+.-++|.
T Consensus 240 kg~~igi~efa~~l~vpvsd~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls 319 (412)
T KOG4666|consen 240 KGPDIGIVEFAVNLRVPVSDKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILS 319 (412)
T ss_pred cCCCcceeEeeeeeecchhhhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHH
Confidence 3445555555543 2 34467777776 99999999999999888999999999999999999999999999
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhcccCCc
Q 030919 112 DVLRDLTGTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILGNSGLK 161 (169)
Q Consensus 112 ~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~~~ 161 (169)
-++....| +..-. +-.+|..++-..+|+|+|++|.+++...|-+
T Consensus 320 ~ilq~~lg--v~~l~----v~~lf~~i~q~d~~ki~~~~f~~fa~~~p~~ 363 (412)
T KOG4666|consen 320 LILQVVLG--VEVLR----VPVLFPSIEQKDDPKIYASNFRKFAATEPNL 363 (412)
T ss_pred HHHHHhcC--cceee----ccccchhhhcccCcceeHHHHHHHHHhCchh
Confidence 99887644 22222 2233888888889999999999998887753
No 78
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=97.77 E-value=0.00022 Score=44.41 Aligned_cols=75 Identities=20% Similarity=0.344 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhhhcCC--CCCCcCHHHhcChhHHHHHHHHhccCCHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCCCCC
Q 030919 26 QQEIVSLYERFCQLDRN--NGGFISAEEFLSVPEFARLLRMVDGLNFKEFVAFLSAFSPHATLHQKIEFIFKVYDSDGNG 103 (169)
Q Consensus 26 ~~~~~~~~~~F~~~D~~--~~g~l~~~el~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g 103 (169)
++.+..+...|+.++.. ++|.|+.++|+.+..- .+............+..+|+.+|.+++|
T Consensus 4 e~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~-----------------~~g~~~t~~~~~~~v~~i~~~~D~d~dG 66 (88)
T cd05030 4 EKAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEK-----------------ELPNFLKKEKNQKAIDKIFEDLDTNQDG 66 (88)
T ss_pred HHHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHH-----------------HhhHhhccCCCHHHHHHHHHHcCCCCCC
Confidence 34567788899999866 4789999999865321 0000011223467899999999999999
Q ss_pred cccHHHHHHHHHHh
Q 030919 104 KVTFTDMLDVLRDL 117 (169)
Q Consensus 104 ~Is~~e~~~~l~~~ 117 (169)
.|++++|..++..+
T Consensus 67 ~I~f~eF~~~~~~~ 80 (88)
T cd05030 67 QLSFEEFLVLVIKV 80 (88)
T ss_pred cCcHHHHHHHHHHH
Confidence 99999999988754
No 79
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=97.76 E-value=0.00021 Score=56.97 Aligned_cols=91 Identities=23% Similarity=0.327 Sum_probs=69.3
Q ss_pred HHHHHhhhcCCCCCCcCHHHhcCh----------------hHHHHHHHHhcc--CCHHHHHHHHHhhCCCCCHHHHHHHH
Q 030919 32 LYERFCQLDRNNGGFISAEEFLSV----------------PEFARLLRMVDG--LNFKEFVAFLSAFSPHATLHQKIEFI 93 (169)
Q Consensus 32 ~~~~F~~~D~~~~g~l~~~el~~~----------------~~~~~~~~~~~~--i~~~ef~~~~~~~~~~~~~~~~~~~~ 93 (169)
+..+|+.+|+.++|.+|.+++..+ +-+...|..... ++|.+|..++..+. .+..+.+
T Consensus 110 ~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~~~-----~E~~~qa 184 (694)
T KOG0751|consen 110 FEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHEFQ-----LEHAEQA 184 (694)
T ss_pred HHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhccHHHHHHHHHHHH-----HHHHHHH
Confidence 456799999999999999998876 233344444443 99999999988753 4668999
Q ss_pred HHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHH
Q 030919 94 FKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQRE 128 (169)
Q Consensus 94 F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~ 128 (169)
|+..|+.++|.||.=+|...+... ..++....++
T Consensus 185 fr~~d~~~ng~is~Ldfq~imvt~-~~h~lt~~v~ 218 (694)
T KOG0751|consen 185 FREKDKAKNGFISVLDFQDIMVTI-RIHLLTPFVE 218 (694)
T ss_pred HHHhcccCCCeeeeechHhhhhhh-hhhcCCHHHh
Confidence 999999999999999999988765 3444344433
No 80
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.75 E-value=0.00012 Score=40.37 Aligned_cols=48 Identities=13% Similarity=0.288 Sum_probs=37.8
Q ss_pred cccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhc
Q 030919 104 KVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILG 156 (169)
Q Consensus 104 ~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~ 156 (169)
.+|+.|++.+|+.+ ...++++.+..+ |...|.+++|.+.-+||..+.+
T Consensus 1 kmsf~Evk~lLk~~-NI~~~~~yA~~L----Fq~~D~s~~g~Le~~Ef~~Fy~ 48 (51)
T PF14788_consen 1 KMSFKEVKKLLKMM-NIEMDDEYARQL----FQECDKSQSGRLEGEEFEEFYK 48 (51)
T ss_dssp EBEHHHHHHHHHHT-T----HHHHHHH----HHHH-SSSSSEBEHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-ccCcCHHHHHHH----HHHhcccCCCCccHHHHHHHHH
Confidence 36889999999998 888988887776 9999999999999999988765
No 81
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.68 E-value=0.00027 Score=43.39 Aligned_cols=69 Identities=20% Similarity=0.349 Sum_probs=53.8
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHhhCC-CCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhcccC
Q 030919 90 IEFIFKVYDSDGNGKVTFTDMLDVLRDLTGT-FISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILGNSG 159 (169)
Q Consensus 90 ~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~ 159 (169)
+..+|..|.. +.+.||.++|..+|..-++. ..+.+++..++...-........+.++.+.|.++|.+..
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~ 71 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDE 71 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTT
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCc
Confidence 5778999955 88999999999999987766 578999888865543333233578999999999997764
No 82
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.68 E-value=0.00021 Score=52.21 Aligned_cols=122 Identities=17% Similarity=0.150 Sum_probs=81.3
Q ss_pred HHHHHHHhhhcCCCCCCcCHHHhcCh-h------------HHHHHHHHhcc-----CCHHHHHHHHHhhCCCCCHH----
Q 030919 30 VSLYERFCQLDRNNGGFISAEEFLSV-P------------EFARLLRMVDG-----LNFKEFVAFLSAFSPHATLH---- 87 (169)
Q Consensus 30 ~~~~~~F~~~D~~~~g~l~~~el~~~-~------------~~~~~~~~~~~-----i~~~ef~~~~~~~~~~~~~~---- 87 (169)
..+..+|...|.+.||.||..++.+. . +-...|+.+|+ |+++||..-+.+..+....+
T Consensus 101 rklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlaskghsekevada 180 (362)
T KOG4251|consen 101 RKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKEVADA 180 (362)
T ss_pred HHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCcchHHHHHH
Confidence 34778899999999999999999876 1 11145566665 88999876555543221110
Q ss_pred ---------HHHHHHHHHhCCCCCCcccH---------HHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCCcccHH
Q 030919 88 ---------QKIEFIFKVYDSDGNGKVTF---------TDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKDSLMILS 149 (169)
Q Consensus 88 ---------~~~~~~F~~~D~~~~g~Is~---------~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~ 149 (169)
..-...|..-+.++.|..+. +|+..+| .+..+...+..+++.++..+|.|+|..++..
T Consensus 181 irlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFL----HPEhSrgmLrfmVkeivrdlDqdgDkqlSvp 256 (362)
T KOG4251|consen 181 IRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFL----HPEHSRGMLRFMVKEIVRDLDQDGDKQLSVP 256 (362)
T ss_pred hhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHc----ChHhhhhhHHHHHHHHHHHhccCCCeeecch
Confidence 00123344444455554443 5665555 5556666777888889999999999999999
Q ss_pred HHHHHh
Q 030919 150 DFVKIL 155 (169)
Q Consensus 150 eF~~~l 155 (169)
+|++..
T Consensus 257 eFislp 262 (362)
T KOG4251|consen 257 EFISLP 262 (362)
T ss_pred hhhcCC
Confidence 998654
No 83
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.56 E-value=0.0011 Score=41.38 Aligned_cols=73 Identities=19% Similarity=0.385 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhhhcCCCCCCcCHHHhcChhHHHHHHHHhccCCHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCCCCCccc
Q 030919 27 QEIVSLYERFCQLDRNNGGFISAEEFLSVPEFARLLRMVDGLNFKEFVAFLSAFSPHATLHQKIEFIFKVYDSDGNGKVT 106 (169)
Q Consensus 27 ~~~~~~~~~F~~~D~~~~g~l~~~el~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~Is 106 (169)
..+..+-.+|+.+. ..++.++..||+.+.+- |+-.++. .......+..+++..|.|+||.|+
T Consensus 5 ~ai~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~-------------Elp~~l~----~~~d~~~vd~im~~LD~n~Dg~vd 66 (91)
T cd05024 5 HSMEKMMLTFHKFA-GEKNYLNRDDLQKLMEK-------------EFSEFLK----NQNDPMAVDKIMKDLDDCRDGKVG 66 (91)
T ss_pred HHHHHHHHHHHHHc-CCCCcCCHHHHHHHHHH-------------HhHHHHc----CCCCHHHHHHHHHHhCCCCCCcCc
Confidence 34566778899996 45678999999987321 2222222 334567899999999999999999
Q ss_pred HHHHHHHHHHh
Q 030919 107 FTDMLDVLRDL 117 (169)
Q Consensus 107 ~~e~~~~l~~~ 117 (169)
+.||-.++..+
T Consensus 67 F~EF~~Lv~~l 77 (91)
T cd05024 67 FQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHH
Confidence 99999888765
No 84
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=97.54 E-value=0.00054 Score=54.21 Aligned_cols=116 Identities=17% Similarity=0.282 Sum_probs=63.9
Q ss_pred HHHHHHhhhcCCCCCCcCHHHhcCh---hHHHHHHHHhcc------CCHHHHHHHHHhhC-------------------C
Q 030919 31 SLYERFCQLDRNNGGFISAEEFLSV---PEFARLLRMVDG------LNFKEFVAFLSAFS-------------------P 82 (169)
Q Consensus 31 ~~~~~F~~~D~~~~g~l~~~el~~~---~~~~~~~~~~~~------i~~~ef~~~~~~~~-------------------~ 82 (169)
.++..|..+++.++|+|+..++... ..+..+...-+. .+++.|..+++.+- .
T Consensus 226 vi~rIFy~~nrs~tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d 305 (493)
T KOG2562|consen 226 VIQRIFYYLNRSRTGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGD 305 (493)
T ss_pred HhhhhheeeCCccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHhc
Confidence 4577889999999999999999876 122211111111 44444443333211 0
Q ss_pred CCCHHHHHHHHHH----HhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHH
Q 030919 83 HATLHQKIEFIFK----VYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKDSLMILSDF 151 (169)
Q Consensus 83 ~~~~~~~~~~~F~----~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF 151 (169)
.......+..+|. -+-...+|.++.++|..++-++ -..-++.-++.. |+.+|.+++|.++-.|.
T Consensus 306 ~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~-e~k~t~~SleYw----FrclDld~~G~Lt~~el 373 (493)
T KOG2562|consen 306 HTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAE-EDKDTPASLEYW----FRCLDLDGDGILTLNEL 373 (493)
T ss_pred cchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHh-ccCCCccchhhh----eeeeeccCCCcccHHHH
Confidence 1112233555555 2223455666666666666655 445555554444 66666666666666654
No 85
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.45 E-value=0.00018 Score=35.55 Aligned_cols=26 Identities=12% Similarity=0.204 Sum_probs=22.3
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHhcc
Q 030919 132 TDVLDEAGYTKDSLMILSDFVKILGN 157 (169)
Q Consensus 132 ~~~~~~~d~~~dg~i~~~eF~~~l~~ 157 (169)
+.+|+.+|.|++|.|+.+||..++++
T Consensus 3 ~~~F~~~D~d~dG~I~~~el~~~l~~ 28 (31)
T PF13405_consen 3 REAFKMFDKDGDGFIDFEELRAILRK 28 (31)
T ss_dssp HHHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 45599999999999999999999873
No 86
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.38 E-value=0.0015 Score=53.34 Aligned_cols=129 Identities=17% Similarity=0.280 Sum_probs=86.2
Q ss_pred ccCCHHHHHHHHHHHhhhcCCCCCCcCHHHhcCh----------h-HHHHHHHHhcc----------CCHHHHHHHHHhh
Q 030919 22 HAFSQQEIVSLYERFCQLDRNNGGFISAEEFLSV----------P-EFARLLRMVDG----------LNFKEFVAFLSAF 80 (169)
Q Consensus 22 ~~~~~~~~~~~~~~F~~~D~~~~g~l~~~el~~~----------~-~~~~~~~~~~~----------i~~~ef~~~~~~~ 80 (169)
+.+.+.-+..+..+|..-|.|.||.++-.++..+ | ++..+-..... ++...|+.+...+
T Consensus 187 qelkp~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~lf 266 (625)
T KOG1707|consen 187 QELKPRCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTLF 266 (625)
T ss_pred ccccHHHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHHH
Confidence 3467788899999999999999999999999877 2 22222222221 6666676555444
Q ss_pred CCC-----------------------------------------CCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhhC
Q 030919 81 SPH-----------------------------------------ATLHQKIEFIFKVYDSDGNGKVTFTDMLDVLRDLTG 119 (169)
Q Consensus 81 ~~~-----------------------------------------~~~~~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~ 119 (169)
.++ ...-..+...|..||.++||.++..|+..++...-+
T Consensus 267 iergr~EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~ 346 (625)
T KOG1707|consen 267 IERGRHETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPG 346 (625)
T ss_pred HHhccccchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCC
Confidence 332 223345778999999999999999999999987633
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhcc
Q 030919 120 TFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILGN 157 (169)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~ 157 (169)
.+++..--. ...-.+..|.++++-|+..+.-
T Consensus 347 ~pW~~~~~~-------~~t~~~~~G~ltl~g~l~~WsL 377 (625)
T KOG1707|consen 347 SPWTSSPYK-------DSTVKNERGWLTLNGFLSQWSL 377 (625)
T ss_pred CCCCCCccc-------ccceecccceeehhhHHHHHHH
Confidence 333311100 1112346889999988765543
No 87
>PF14658 EF-hand_9: EF-hand domain
Probab=97.37 E-value=0.0011 Score=38.62 Aligned_cols=61 Identities=21% Similarity=0.480 Sum_probs=47.9
Q ss_pred HHhhhcCCCCCCcCHHHhcChhHHHHHHHHhccCCHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCCCC-CcccHHHHHHH
Q 030919 35 RFCQLDRNNGGFISAEEFLSVPEFARLLRMVDGLNFKEFVAFLSAFSPHATLHQKIEFIFKVYDSDGN-GKVTFTDMLDV 113 (169)
Q Consensus 35 ~F~~~D~~~~g~l~~~el~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~-g~Is~~e~~~~ 113 (169)
+|..+|+++.|.|...++..+ +.+...+...+..+....+.+|++|. |.|+++.|..+
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~---------------------Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~i 61 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITY---------------------LRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAI 61 (66)
T ss_pred chhhcCCcCCceEeHHHHHHH---------------------HHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHH
Confidence 588888999998887777633 23333335666789999999999999 99999999998
Q ss_pred HHH
Q 030919 114 LRD 116 (169)
Q Consensus 114 l~~ 116 (169)
++.
T Consensus 62 M~~ 64 (66)
T PF14658_consen 62 MRD 64 (66)
T ss_pred HHH
Confidence 875
No 88
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.36 E-value=0.00087 Score=53.88 Aligned_cols=66 Identities=21% Similarity=0.330 Sum_probs=52.6
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhc
Q 030919 88 QKIEFIFKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILG 156 (169)
Q Consensus 88 ~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~ 156 (169)
..++..|...| +++|+|+..++..++... +... -...++.+++++...+.|.+|+|+|++|+..+.
T Consensus 19 ~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~-~~~~-g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~ 84 (627)
T KOG0046|consen 19 RELKEKFNKLD-DQKGYVTVYELPDAFKKA-KLPL-GYFVREEIKEILGEVGVDADGRVEFEEFVGIFL 84 (627)
T ss_pred HHHHHHHHhhc-CCCCeeehHHhHHHHHHh-cccc-cchhHHHHHHHHhccCCCcCCccCHHHHHHHHH
Confidence 45788899999 999999999999999886 4333 333334466669999999999999999998543
No 89
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.35 E-value=0.00059 Score=53.88 Aligned_cols=53 Identities=30% Similarity=0.433 Sum_probs=40.2
Q ss_pred HHHHHHHhhhcCCCCCCcCHHHhcChhHHHHHHHHhccCCHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCCCCCcccHHH
Q 030919 30 VSLYERFCQLDRNNGGFISAEEFLSVPEFARLLRMVDGLNFKEFVAFLSAFSPHATLHQKIEFIFKVYDSDGNGKVTFTD 109 (169)
Q Consensus 30 ~~~~~~F~~~D~~~~g~l~~~el~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~Is~~e 109 (169)
..+..+|+.+|.+++|.|+.+||. . +..+|..+|.|++|.|+.+|
T Consensus 334 ~~l~~aF~~~D~dgdG~Is~~E~~---------------------~--------------~~~~F~~~D~d~DG~Is~eE 378 (391)
T PRK12309 334 HAAQEIFRLYDLDGDGFITREEWL---------------------G--------------SDAVFDALDLNHDGKITPEE 378 (391)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHH---------------------H--------------HHHHHHHhCCCCCCCCcHHH
Confidence 345666777777777776666652 1 35679999999999999999
Q ss_pred HHHHHHHh
Q 030919 110 MLDVLRDL 117 (169)
Q Consensus 110 ~~~~l~~~ 117 (169)
|.+++...
T Consensus 379 f~~~~~~~ 386 (391)
T PRK12309 379 MRAGLGAA 386 (391)
T ss_pred HHHHHHHH
Confidence 99998764
No 90
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.16 E-value=0.00046 Score=44.34 Aligned_cols=68 Identities=21% Similarity=0.287 Sum_probs=53.0
Q ss_pred CCHHHHHHHHHHHhhhcCCCCCCcCHHHhcChhHHHHHHHHhccCCHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCCCCC
Q 030919 24 FSQQEIVSLYERFCQLDRNNGGFISAEEFLSVPEFARLLRMVDGLNFKEFVAFLSAFSPHATLHQKIEFIFKVYDSDGNG 103 (169)
Q Consensus 24 ~~~~~~~~~~~~F~~~D~~~~g~l~~~el~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g 103 (169)
+++++.+.+...|..+|+ ++|.|+-.+.+.+ +.. .+-..+.+..+|.+.|.+++|
T Consensus 4 ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~---------------------f~~---S~L~~~~L~~IW~LaD~~~dG 58 (104)
T PF12763_consen 4 LSPEEKQKYDQIFQSLDP-QDGKISGDQAREF---------------------FMK---SGLPRDVLAQIWNLADIDNDG 58 (104)
T ss_dssp -SCCHHHHHHHHHHCTSS-STTEEEHHHHHHH---------------------HHH---TTSSHHHHHHHHHHH-SSSSS
T ss_pred CCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHH---------------------HHH---cCCCHHHHHHHHhhhcCCCCC
Confidence 678889999999999985 5899988887632 111 344558899999999999999
Q ss_pred cccHHHHHHHHHH
Q 030919 104 KVTFTDMLDVLRD 116 (169)
Q Consensus 104 ~Is~~e~~~~l~~ 116 (169)
.++.+||.-++.-
T Consensus 59 ~L~~~EF~iAm~L 71 (104)
T PF12763_consen 59 KLDFEEFAIAMHL 71 (104)
T ss_dssp EEEHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH
Confidence 9999999887753
No 91
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.00 E-value=0.0014 Score=30.63 Aligned_cols=27 Identities=33% Similarity=0.853 Sum_probs=24.1
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHH
Q 030919 90 IEFIFKVYDSDGNGKVTFTDMLDVLRD 116 (169)
Q Consensus 90 ~~~~F~~~D~~~~g~Is~~e~~~~l~~ 116 (169)
++.+|..+|.+++|.|+..+|..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 467899999999999999999998864
No 92
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=96.98 E-value=0.0045 Score=34.14 Aligned_cols=49 Identities=16% Similarity=0.302 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q 030919 68 LNFKEFVAFLSAFSPHATLHQKIEFIFKVYDSDGNGKVTFTDMLDVLRDL 117 (169)
Q Consensus 68 i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~ 117 (169)
++|.|...++.... -......+..+|+..|++++|.+..+||.++.+.+
T Consensus 2 msf~Evk~lLk~~N-I~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 2 MSFKEVKKLLKMMN-IEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp BEHHHHHHHHHHTT-----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHc-cCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 45667777766643 34566778899999999999999999999998765
No 93
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=96.86 E-value=0.004 Score=49.29 Aligned_cols=60 Identities=17% Similarity=0.366 Sum_probs=40.5
Q ss_pred HHHHHHHhcc-----CCHHHHHHHHHhh---CCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q 030919 58 FARLLRMVDG-----LNFKEFVAFLSAF---SPHATLHQKIEFIFKVYDSDGNGKVTFTDMLDVLRDL 117 (169)
Q Consensus 58 ~~~~~~~~~~-----i~~~ef~~~~~~~---~~~~~~~~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~ 117 (169)
+..||+.+|. |+++||...+..+ .+..-....+-..-+..|-|+||.|++.||-.+++-.
T Consensus 549 LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 549 LETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred HHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhh
Confidence 4455555554 5555555444332 2334445667777889999999999999999998754
No 94
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.83 E-value=0.002 Score=30.09 Aligned_cols=26 Identities=12% Similarity=0.184 Sum_probs=22.6
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHhcc
Q 030919 132 TDVLDEAGYTKDSLMILSDFVKILGN 157 (169)
Q Consensus 132 ~~~~~~~d~~~dg~i~~~eF~~~l~~ 157 (169)
+.+|..+|.+++|.|++.+|..++..
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 44589999999999999999998864
No 95
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=96.82 E-value=0.044 Score=46.23 Aligned_cols=131 Identities=21% Similarity=0.356 Sum_probs=96.4
Q ss_pred CHHHHHHHHHHHhhhcCCCCCCcCHHHhcCh----------hHHHHHHHHhcc-----CCHHHHHHHHHhhCCCCCHHHH
Q 030919 25 SQQEIVSLYERFCQLDRNNGGFISAEEFLSV----------PEFARLLRMVDG-----LNFKEFVAFLSAFSPHATLHQK 89 (169)
Q Consensus 25 ~~~~~~~~~~~F~~~D~~~~g~l~~~el~~~----------~~~~~~~~~~~~-----i~~~ef~~~~~~~~~~~~~~~~ 89 (169)
..+...-+...|+..|.+.+|.++..+...+ .....+|...+. +...+|..+......+ ..
T Consensus 131 ~~~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~r----pe 206 (746)
T KOG0169|consen 131 RSRREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKR----PE 206 (746)
T ss_pred cchHHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccC----ch
Confidence 4444566788999999999999999887776 123355555543 8888888887765433 26
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHhhCC-CCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhcccCC
Q 030919 90 IEFIFKVYDSDGNGKVTFTDMLDVLRDLTGT-FISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILGNSGL 160 (169)
Q Consensus 90 ~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~~ 160 (169)
+...|..+-.+ .+.++.+++..++....+. +.+.+.++++++.+-..-.....+.++.+.|.++|.+...
T Consensus 207 v~~~f~~~s~~-~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S~~~ 277 (746)
T KOG0169|consen 207 VYFLFVQYSHG-KEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFSPDC 277 (746)
T ss_pred HHHHHHHHhCC-CCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcCccC
Confidence 77888877544 8899999999999887544 5788888888666533333345667999999999987654
No 96
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=96.63 E-value=0.006 Score=54.82 Aligned_cols=71 Identities=23% Similarity=0.458 Sum_probs=55.0
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHhhCCCCC--HH-HHHHHHHHHHHhhCCCCCCcccHHHHHHHhcccCC
Q 030919 89 KIEFIFKVYDSDGNGKVTFTDMLDVLRDLTGTFIS--EK-QREQVLTDVLDEAGYTKDSLMILSDFVKILGNSGL 160 (169)
Q Consensus 89 ~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~--~~-~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~~ 160 (169)
....+|..||++.+|.++-.+|+..|+.+ |-.++ ++ +.+--++.++...|++.+|+|+..+|.++|-....
T Consensus 2254 EFs~~fkhFDkek~G~Ldhq~F~sCLrsl-gY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ET 2327 (2399)
T KOG0040|consen 2254 EFSMMFKHFDKEKNGRLDHQHFKSCLRSL-GYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKET 2327 (2399)
T ss_pred HHHHHHHHhchhhccCCcHHHHHHHHHhc-CCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhccc
Confidence 35578999999999999999999999987 76553 22 11111344489999999999999999999876543
No 97
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.62 E-value=0.025 Score=47.85 Aligned_cols=61 Identities=13% Similarity=0.207 Sum_probs=51.3
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHh
Q 030919 88 QKIEFIFKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKIL 155 (169)
Q Consensus 88 ~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l 155 (169)
-+.+..|+.+|+...|++|...-+.+|.. ..++...+..+ +..-|.|+||+++.+||+-.+
T Consensus 195 lKY~QlFNa~DktrsG~Lsg~qaR~aL~q---S~Lpq~~LA~I----W~LsDvd~DGkL~~dEfilam 255 (1118)
T KOG1029|consen 195 LKYRQLFNALDKTRSGYLSGQQARSALGQ---SGLPQNQLAHI----WTLSDVDGDGKLSADEFILAM 255 (1118)
T ss_pred hHHHHHhhhcccccccccccHHHHHHHHh---cCCchhhHhhh----eeeeccCCCCcccHHHHHHHH
Confidence 45778999999999999999999999853 45777775555 999999999999999997544
No 98
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=96.59 E-value=0.019 Score=35.72 Aligned_cols=71 Identities=17% Similarity=0.208 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHhh------CCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhcccCC
Q 030919 87 HQKIEFIFKVYDSDGNGKVTFTDMLDVLRDLT------GTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILGNSGL 160 (169)
Q Consensus 87 ~~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~------~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~~ 160 (169)
.++++.+|+.+ .|++|.++...|..+|.... ++..+=.-++..++.||... .....|+-+.|+.|+...|-
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~ePq 78 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMSEPQ 78 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT--T
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHhCCC
Confidence 47889999999 88999999999998887432 33222222566688889986 35568999999999998764
No 99
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=96.51 E-value=0.005 Score=41.58 Aligned_cols=64 Identities=20% Similarity=0.367 Sum_probs=50.0
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhcc
Q 030919 90 IEFIFKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILGN 157 (169)
Q Consensus 90 ~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~ 157 (169)
-+.+...|..+|+|.+|+++|..+++.+ + ++.+.+++ +.-.|+.+|.|+|+.|.-++....+++
T Consensus 73 k~ri~e~FSeDG~GnlsfddFlDmfSV~-s-E~APrdlK--~~YAFkIYDfd~D~~i~~~DL~~~l~~ 136 (189)
T KOG0038|consen 73 KRRICEVFSEDGRGNLSFDDFLDMFSVF-S-EMAPRDLK--AKYAFKIYDFDGDEFIGHDDLEKTLTS 136 (189)
T ss_pred HHHHHHHhccCCCCcccHHHHHHHHHHH-H-hhChHHhh--hhheeEEeecCCCCcccHHHHHHHHHH
Confidence 4566778889999999999999999887 3 44555544 344588999999999999988766654
No 100
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=96.14 E-value=0.0064 Score=39.66 Aligned_cols=63 Identities=22% Similarity=0.365 Sum_probs=40.8
Q ss_pred CHHHHHHHHHHHhhhcCCCCCCcCHHHhcChhHHHHHHHHhccCCHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCCCCCc
Q 030919 25 SQQEIVSLYERFCQLDRNNGGFISAEEFLSVPEFARLLRMVDGLNFKEFVAFLSAFSPHATLHQKIEFIFKVYDSDGNGK 104 (169)
Q Consensus 25 ~~~~~~~~~~~F~~~D~~~~g~l~~~el~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~ 104 (169)
.......+.=.|..+|.|+||.|+..|+..+... + ...+..++..|+..|.|++|.
T Consensus 49 ~~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~------------------l------~~~e~C~~~F~~~CD~n~d~~ 104 (113)
T PF10591_consen 49 YSECKRVVHWKFCQLDRNKDGVLDRSELKPLRRP------------------L------MPPEHCARPFFRSCDVNKDGK 104 (113)
T ss_dssp GGGGHHHHHHHHHHH--T-SSEE-TTTTGGGGST------------------T------STTGGGHHHHHHHH-TT-SSS
T ss_pred hhhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHH------------------H------hhhHHHHHHHHHHcCCCCCCC
Confidence 3344455666799999999999999999866311 0 122345677889999999999
Q ss_pred ccHHHHH
Q 030919 105 VTFTDML 111 (169)
Q Consensus 105 Is~~e~~ 111 (169)
||..|..
T Consensus 105 Is~~EW~ 111 (113)
T PF10591_consen 105 ISLDEWC 111 (113)
T ss_dssp EEHHHHH
T ss_pred CCHHHHc
Confidence 9999865
No 101
>PLN02952 phosphoinositide phospholipase C
Probab=96.03 E-value=0.12 Score=43.24 Aligned_cols=91 Identities=16% Similarity=0.251 Sum_probs=65.0
Q ss_pred CCHHHHHHHHHhhCC-CCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhhCCC-CCHHHHHHHHHHHHHhhC---CCC
Q 030919 68 LNFKEFVAFLSAFSP-HATLHQKIEFIFKVYDSDGNGKVTFTDMLDVLRDLTGTF-ISEKQREQVLTDVLDEAG---YTK 142 (169)
Q Consensus 68 i~~~ef~~~~~~~~~-~~~~~~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~d---~~~ 142 (169)
++|.+|..+...+.. .......+..+|..+-. +.+.+|.++|..+|...++.. .+.+++..++..+++... ..+
T Consensus 17 l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~~~~ 95 (599)
T PLN02952 17 YNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVTRYT 95 (599)
T ss_pred cCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccccccc
Confidence 678888776665531 22356789999999955 446899999999999887654 677787777665544322 123
Q ss_pred CCcccHHHHHHHhcccC
Q 030919 143 DSLMILSDFVKILGNSG 159 (169)
Q Consensus 143 dg~i~~~eF~~~l~~~~ 159 (169)
.+.++++.|..+|....
T Consensus 96 ~~~l~~~~F~~~l~s~~ 112 (599)
T PLN02952 96 RHGLNLDDFFHFLLYDD 112 (599)
T ss_pred ccCcCHHHHHHHHcCcc
Confidence 34689999999998653
No 102
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=96.03 E-value=0.0031 Score=48.03 Aligned_cols=72 Identities=14% Similarity=0.225 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhcccCC
Q 030919 85 TLHQKIEFIFKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILGNSGL 160 (169)
Q Consensus 85 ~~~~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~~ 160 (169)
+.+.-+.+.|.++|.|.++.|...|.+-+=..+ .....++...+++++..|.|+|.+|++.|+...|.....
T Consensus 330 DeeRvv~w~F~qLdkN~nn~i~rrEwKpFK~~l----~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~~~ 401 (421)
T KOG4578|consen 330 DEERVVHWYFNQLDKNSNNDIERREWKPFKRVL----LKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVEKE 401 (421)
T ss_pred ChhheeeeeeeeecccccCccchhhcchHHHHH----HhhccHHHHhhhcchhcccCCCceecHHHHhhhhccccc
Confidence 334467888999999999999999976654443 222333344677799999999999999999998876554
No 103
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=96.03 E-value=0.29 Score=42.44 Aligned_cols=114 Identities=17% Similarity=0.283 Sum_probs=84.4
Q ss_pred hcCCCCCCcCHHHhcCh-----hHHHHHHHHhcc---------------CCHHHHHHHHHhhCCCCCHHHHHHHHHHHhC
Q 030919 39 LDRNNGGFISAEEFLSV-----PEFARLLRMVDG---------------LNFKEFVAFLSAFSPHATLHQKIEFIFKVYD 98 (169)
Q Consensus 39 ~D~~~~g~l~~~el~~~-----~~~~~~~~~~~~---------------i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D 98 (169)
+..+..|+|....+.+. ++ .++...+.. .+++.|..++..++++ ..+..+|..+.
T Consensus 157 mqvn~~grip~knI~k~F~~~k~~-KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~klcpR----~eie~iF~ki~ 231 (1189)
T KOG1265|consen 157 MQVNFEGRIPVKNIIKTFSADKKE-KRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKLCPR----PEIEEIFRKIS 231 (1189)
T ss_pred hcccccccccHHHHHHHhhcCCch-hHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhcCCc----hhHHHHHHHhc
Confidence 44688899998888876 22 334444432 7889999999998876 77889999998
Q ss_pred CCCCCcccHHHHHHHHHHhh---------CCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhcc
Q 030919 99 SDGNGKVTFTDMLDVLRDLT---------GTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILGN 157 (169)
Q Consensus 99 ~~~~g~Is~~e~~~~l~~~~---------~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~ 157 (169)
.+..-++|.++|..++..-+ .+...+..+..+|.+.-..-+.-.+|.++-+-|++++..
T Consensus 232 ~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 232 GKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred cCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhC
Confidence 88888999999999997422 345667887777444333333335689999999999987
No 104
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=95.93 E-value=0.02 Score=46.32 Aligned_cols=59 Identities=27% Similarity=0.520 Sum_probs=45.2
Q ss_pred cccCCHHHHHHHHHHHhhhcCCCCCCcCHHHhcCh-------------hHHHHHHHHhcc-----CCHHHHHHHHHhh
Q 030919 21 NHAFSQQEIVSLYERFCQLDRNNGGFISAEEFLSV-------------PEFARLLRMVDG-----LNFKEFVAFLSAF 80 (169)
Q Consensus 21 ~~~~~~~~~~~~~~~F~~~D~~~~g~l~~~el~~~-------------~~~~~~~~~~~~-----i~~~ef~~~~~~~ 80 (169)
+..+|++++..+++.|..+| +++|+++..++..+ .++.++....+. ++|++|+.++..+
T Consensus 10 ~~~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 10 QSQLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred cccccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 35699999999999999999 99999999999876 233344444443 8888888766554
No 105
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=95.57 E-value=0.092 Score=43.67 Aligned_cols=77 Identities=18% Similarity=0.260 Sum_probs=44.6
Q ss_pred CCHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCCccc
Q 030919 68 LNFKEFVAFLSAFSPHATLHQKIEFIFKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKDSLMI 147 (169)
Q Consensus 68 i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~ 147 (169)
+++..|...+....+.......+...|+.+|.+++|.||+.++...|..+..... .+. ++-++...|.+++ ..+
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~-~ek----~~l~y~lh~~p~~-~~d 608 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDA-LEK----LKLLYKLHDPPAD-ELD 608 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhH-HHH----HHHHHhhccCCcc-ccc
Confidence 5555555555554443444455667777777777777777777777766522222 222 3444666666665 544
Q ss_pred HHH
Q 030919 148 LSD 150 (169)
Q Consensus 148 ~~e 150 (169)
.++
T Consensus 609 ~e~ 611 (671)
T KOG4347|consen 609 REE 611 (671)
T ss_pred ccc
Confidence 443
No 106
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=95.14 E-value=0.043 Score=49.49 Aligned_cols=63 Identities=21% Similarity=0.339 Sum_probs=51.0
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhcccCC
Q 030919 92 FIFKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILGNSGL 160 (169)
Q Consensus 92 ~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~~ 160 (169)
-.|+.||++|.|.|+..+|..++.. ..+.+..+++-+ +..+..+.+...+|++|+.-+-....
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~--~k~ytqse~dfl----lscae~dend~~~y~dfv~rfhepak 4123 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEG--HKHYTQSEIDFL----LSCAEADENDMFDYEDFVDRFHEPAK 4123 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhc--cccchhHHHHHH----HHhhccCccccccHHHHHHHhcCchh
Confidence 3488999999999999999999965 346788886555 88888888889999999977654443
No 107
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=95.02 E-value=0.034 Score=42.81 Aligned_cols=65 Identities=8% Similarity=0.190 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhcccCC
Q 030919 87 HQKIEFIFKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILGNSGL 160 (169)
Q Consensus 87 ~~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~~ 160 (169)
...+.++|..+|.|.+|.++..|++.+-. ...| ..|+-+|+..|...||.|+-.||+..+.+.+.
T Consensus 249 Kds~gWMFnklD~N~Dl~Ld~sEl~~I~l-------dknE--~CikpFfnsCD~~kDg~iS~~EWC~CF~k~~~ 313 (434)
T KOG3555|consen 249 KDSLGWMFNKLDTNYDLLLDQSELRAIEL-------DKNE--ACIKPFFNSCDTYKDGSISTNEWCYCFQKSDP 313 (434)
T ss_pred hhhhhhhhhccccccccccCHHHhhhhhc-------cCch--hHHHHHHhhhcccccCccccchhhhhhccCCC
Confidence 35788999999999999999999986542 1111 22566699999999999999999998887664
No 108
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=94.81 E-value=0.068 Score=40.68 Aligned_cols=69 Identities=14% Similarity=0.264 Sum_probs=49.7
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHH----hhCCCCCHHHHHH-------HHHHHHHhhCCCCCCcccHHHHHHHhcccC
Q 030919 91 EFIFKVYDSDGNGKVTFTDMLDVLRD----LTGTFISEKQREQ-------VLTDVLDEAGYTKDSLMILSDFVKILGNSG 159 (169)
Q Consensus 91 ~~~F~~~D~~~~g~Is~~e~~~~l~~----~~~~~~~~~~~~~-------~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~ 159 (169)
+..|.++|.|++|.++-.|+..++.. ++.+.-.++...+ |-..+++..|.|.|..|+.+||++.-.+..
T Consensus 247 KTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~ke 326 (442)
T KOG3866|consen 247 KTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDNKE 326 (442)
T ss_pred chheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhhcc
Confidence 46788999999999999999988753 3233222222221 234579999999999999999997655543
No 109
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=94.18 E-value=0.14 Score=39.25 Aligned_cols=67 Identities=15% Similarity=0.200 Sum_probs=54.3
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhccc
Q 030919 88 QKIEFIFKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILGNS 158 (169)
Q Consensus 88 ~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~ 158 (169)
..+...|.+||.+++|.++..|-...+.-+-++..++.- |+-.|+.++...||.++-.+|...|+..
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~i----iq~afk~f~v~eDg~~ge~~ls~ilq~~ 325 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVI----IQYAFKRFSVAEDGISGEHILSLILQVV 325 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHH----HHHHHHhcccccccccchHHHHHHHHHh
Confidence 678899999999999999999988888766455666665 4445999999999999998887766554
No 110
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.45 E-value=0.26 Score=39.95 Aligned_cols=61 Identities=11% Similarity=0.224 Sum_probs=51.2
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHh
Q 030919 88 QKIEFIFKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKIL 155 (169)
Q Consensus 88 ~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l 155 (169)
+....-|+.+-.|-.|.|+..--++++.+ ..++..|+..| +...|.+.||-++..||+.++
T Consensus 231 eYYvnQFrtvQpDp~gfisGsaAknFFtK---Sklpi~ELshI----WeLsD~d~DGALtL~EFcAAf 291 (737)
T KOG1955|consen 231 EYYVNQFRTVQPDPHGFISGSAAKNFFTK---SKLPIEELSHI----WELSDVDRDGALTLSEFCAAF 291 (737)
T ss_pred HHHHhhhhcccCCcccccccHHHHhhhhh---ccCchHHHHHH----HhhcccCccccccHHHHHhhH
Confidence 44556688889999999999999999964 46888886555 999999999999999999765
No 111
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=92.92 E-value=0.66 Score=32.45 Aligned_cols=67 Identities=16% Similarity=0.236 Sum_probs=49.0
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHhhC-------------------------------------------------
Q 030919 89 KIEFIFKVYDSDGNGKVTFTDMLDVLRDLTG------------------------------------------------- 119 (169)
Q Consensus 89 ~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~------------------------------------------------- 119 (169)
-++.-..-||+|+||.|..-|--.-++++ |
T Consensus 8 ~LQqHvaFFDrd~DGiI~P~dTy~GFraL-Gf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~ 86 (174)
T PF05042_consen 8 VLQQHVAFFDRDKDGIIYPWDTYQGFRAL-GFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGA 86 (174)
T ss_pred HHhhhhceeCCCCCeeECHHHHHHHHHHh-CCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCccc
Confidence 34555667999999999998866555432 2
Q ss_pred ----CCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhcccCC
Q 030919 120 ----TFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILGNSGL 160 (169)
Q Consensus 120 ----~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~~ 160 (169)
.+..++..+++ |.+.+..+.+.+|+.|..+++..|..
T Consensus 87 YD~eGrFvp~kFe~i----F~kya~~~~d~LT~~E~~~m~~~nr~ 127 (174)
T PF05042_consen 87 YDTEGRFVPQKFEEI----FSKYAKTGPDALTLRELWRMLKGNRN 127 (174)
T ss_pred cccCCcCCHHHHHHH----HHHhCCCCCCCcCHHHHHHHHHhccc
Confidence 12224555555 99999888889999999999998765
No 112
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.23 E-value=0.48 Score=38.53 Aligned_cols=70 Identities=14% Similarity=0.253 Sum_probs=52.9
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCCCcCHHHhcChhHHHHHHHHhccCCHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCCCC
Q 030919 23 AFSQQEIVSLYERFCQLDRNNGGFISAEEFLSVPEFARLLRMVDGLNFKEFVAFLSAFSPHATLHQKIEFIFKVYDSDGN 102 (169)
Q Consensus 23 ~~~~~~~~~~~~~F~~~D~~~~g~l~~~el~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~ 102 (169)
.+|+++-+++-..|+.+.+|..|.|+-.--+.+-+ . ....-+.+..+|.+.|.+.|
T Consensus 224 ~IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFt---------------------K---Sklpi~ELshIWeLsD~d~D 279 (737)
T KOG1955|consen 224 QITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFT---------------------K---SKLPIEELSHIWELSDVDRD 279 (737)
T ss_pred ccCHHHHHHHHhhhhcccCCcccccccHHHHhhhh---------------------h---ccCchHHHHHHHhhcccCcc
Confidence 36888888888889998889888887665443311 0 12233677888999999999
Q ss_pred CcccHHHHHHHHHH
Q 030919 103 GKVTFTDMLDVLRD 116 (169)
Q Consensus 103 g~Is~~e~~~~l~~ 116 (169)
|-+|+.||..++.-
T Consensus 280 GALtL~EFcAAfHL 293 (737)
T KOG1955|consen 280 GALTLSEFCAAFHL 293 (737)
T ss_pred ccccHHHHHhhHhh
Confidence 99999999998863
No 113
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=90.52 E-value=1.7 Score=38.03 Aligned_cols=99 Identities=18% Similarity=0.203 Sum_probs=74.8
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHhhhcCCCCCCcCHHHhcCh---------------hHHHHHHHHhcc-----CCHHH
Q 030919 13 IEEVQQHCNHAFSQQEIVSLYERFCQLDRNNGGFISAEEFLSV---------------PEFARLLRMVDG-----LNFKE 72 (169)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~l~~~el~~~---------------~~~~~~~~~~~~-----i~~~e 72 (169)
..++........++.++.++...|..++....|.++.++|..+ .++..+.+..+. ++|.+
T Consensus 730 en~il~R~sk~~sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e 809 (890)
T KOG0035|consen 730 ENEILERDSKGTSQYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLE 809 (890)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHH
Confidence 3344444445678899999999999999999999999999987 122234444443 88999
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHH
Q 030919 73 FVAFLSAFSPHATLHQKIEFIFKVYDSDGNGKVTFTDMLD 112 (169)
Q Consensus 73 f~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~Is~~e~~~ 112 (169)
|...+..-...-+.+..+..+|+.+-+... +|..+||..
T Consensus 810 ~~ddl~R~~e~l~~~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 810 FEDDLEREYEDLDTELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred HHhHhhhhhhhhcHHHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 999988876667778888999998866554 788888876
No 114
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=90.40 E-value=1.6 Score=30.08 Aligned_cols=59 Identities=7% Similarity=0.227 Sum_probs=37.8
Q ss_pred HHHhCCCCCCcccHHHHHHHHHHh--hCCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhc
Q 030919 94 FKVYDSDGNGKVTFTDMLDVLRDL--TGTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILG 156 (169)
Q Consensus 94 F~~~D~~~~g~Is~~e~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~ 156 (169)
|-.|-..+...++...|..+++.. .+..++...++-+ |......+..+|+|++|..+|.
T Consensus 8 f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDii----F~Kvk~k~~~~I~f~~F~~aL~ 68 (154)
T PF05517_consen 8 FASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDII----FSKVKAKGARKITFEQFLEALA 68 (154)
T ss_dssp HHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHH----HHHHT-SS-SEEEHHHHHHHHH
T ss_pred HHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHH----HHHhhcCCCcccCHHHHHHHHH
Confidence 333344555678888888888753 1335777776555 7776666666799999988775
No 115
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=90.24 E-value=0.75 Score=27.86 Aligned_cols=32 Identities=13% Similarity=0.279 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhCCC----CCCcccHHHHHHHHHHh
Q 030919 86 LHQKIEFIFKVYDSD----GNGKVTFTDMLDVLRDL 117 (169)
Q Consensus 86 ~~~~~~~~F~~~D~~----~~g~Is~~e~~~~l~~~ 117 (169)
....+..++..|..+ ..+.+|.++|..+|..-
T Consensus 35 ~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~ 70 (83)
T PF09279_consen 35 TDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSD 70 (83)
T ss_dssp SHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHST
T ss_pred cHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCC
Confidence 455666666666543 46899999999998653
No 116
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=89.23 E-value=1.4 Score=38.50 Aligned_cols=72 Identities=15% Similarity=0.111 Sum_probs=58.3
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhhCCCCCH-HHHHHHHHHHHHhhCCCCCCcccHHHHHHHhcccCC
Q 030919 88 QKIEFIFKVYDSDGNGKVTFTDMLDVLRDLTGTFISE-KQREQVLTDVLDEAGYTKDSLMILSDFVKILGNSGL 160 (169)
Q Consensus 88 ~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~~ 160 (169)
..++..|+.+++...|.++.+++...+..+ |.+... ++...-+..+++..|.+.-|.+++.+|...|.+...
T Consensus 747 ~ElrAle~~~~~~d~~aa~~e~~~~~Lmsl-g~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e 819 (890)
T KOG0035|consen 747 DELRALENEQDKIDGGAASPEELLRCLMSL-GYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYE 819 (890)
T ss_pred HHHHHHHhHHHHhhcccCCHHHHHHHHHhc-CcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhh
Confidence 457889999999999999999999999987 776654 444444555678888888899999999998877654
No 117
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=88.32 E-value=1.1 Score=37.10 Aligned_cols=63 Identities=21% Similarity=0.314 Sum_probs=53.7
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhcc
Q 030919 90 IEFIFKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILGN 157 (169)
Q Consensus 90 ~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~ 157 (169)
.+.-|..+|.+..|+++.+.+..+|... +.+++.+.+.++ +++.|.+-+|.+...||.+++..
T Consensus 595 ~~~rf~~lD~~k~~~~~i~~v~~vlk~~-~~~~d~~~~~~~----l~ea~~~~~g~v~l~e~~q~~s~ 657 (680)
T KOG0042|consen 595 RKTRFAFLDADKKAYQAIADVLKVLKSE-NVGWDEDRLHEE----LQEADENLNGFVELREFLQLMSA 657 (680)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHh-cCCCCHHHHHHH----HHHHHHhhcceeeHHHHHHHHHH
Confidence 4567999999999999999999999987 668888886666 88888888999999999877653
No 118
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=87.64 E-value=1.3 Score=34.07 Aligned_cols=74 Identities=20% Similarity=0.279 Sum_probs=43.0
Q ss_pred HHHHhhhcCCCCCCcCHHHhcCh--hHHHHHHHHhcc-CCHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCCCCCcccHHH
Q 030919 33 YERFCQLDRNNGGFISAEEFLSV--PEFARLLRMVDG-LNFKEFVAFLSAFSPHATLHQKIEFIFKVYDSDGNGKVTFTD 109 (169)
Q Consensus 33 ~~~F~~~D~~~~g~l~~~el~~~--~~~~~~~~~~~~-i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~Is~~e 109 (169)
+..|..+|.|+||.++..+|..+ .++.++|+--.. =+..+--.-.. .--..+.+..|.|.+..||.+|
T Consensus 247 KTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErl---------RMREHVMk~vDtNqDRlvtleE 317 (442)
T KOG3866|consen 247 KTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERL---------RMREHVMKQVDTNQDRLVTLEE 317 (442)
T ss_pred chheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH---------HHHHHHHHhcccchhhhhhHHH
Confidence 45677888899999999998876 233333322211 11111110000 0113456778888888888888
Q ss_pred HHHHHH
Q 030919 110 MLDVLR 115 (169)
Q Consensus 110 ~~~~l~ 115 (169)
|...-.
T Consensus 318 FL~~t~ 323 (442)
T KOG3866|consen 318 FLNDTD 323 (442)
T ss_pred HHhhhh
Confidence 876553
No 119
>PLN02230 phosphoinositide phospholipase C 4
Probab=87.54 E-value=5 Score=33.90 Aligned_cols=74 Identities=15% Similarity=0.205 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhhCC--CCCHHHHHHHHHHHHHhhCC---CCCCcccHHHHHHHhcccC
Q 030919 85 TLHQKIEFIFKVYDSDGNGKVTFTDMLDVLRDLTGT--FISEKQREQVLTDVLDEAGY---TKDSLMILSDFVKILGNSG 159 (169)
Q Consensus 85 ~~~~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~d~---~~dg~i~~~eF~~~l~~~~ 159 (169)
.....+..+|..|-.++ +.+|.++|..+|...++. ..+.+++..++..+...... -+.+.++.+.|..+|.+..
T Consensus 26 ~p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s~~ 104 (598)
T PLN02230 26 GPVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFSTD 104 (598)
T ss_pred CCcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcCcc
Confidence 45578999999995444 899999999999987643 34677777776665443321 2345699999999998854
No 120
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=87.53 E-value=0.65 Score=36.06 Aligned_cols=82 Identities=15% Similarity=0.176 Sum_probs=61.2
Q ss_pred HHHHHHhhhcCCCCCCcCHHHhcCh-------------hHHHHHHHHhcc-----CCHHHHHHHHHhhCCCCCHHHHHHH
Q 030919 31 SLYERFCQLDRNNGGFISAEEFLSV-------------PEFARLLRMVDG-----LNFKEFVAFLSAFSPHATLHQKIEF 92 (169)
Q Consensus 31 ~~~~~F~~~D~~~~g~l~~~el~~~-------------~~~~~~~~~~~~-----i~~~ef~~~~~~~~~~~~~~~~~~~ 92 (169)
++...|+.+=.+.++......+... -++-.+|+.+|. ++..|...+. ....+.-++.
T Consensus 212 RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~-----ldknE~Cikp 286 (434)
T KOG3555|consen 212 RLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIE-----LDKNEACIKP 286 (434)
T ss_pred HHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhh-----ccCchhHHHH
Confidence 4677888776777776666666655 245578888887 7777766553 3455678999
Q ss_pred HHHHhCCCCCCcccHHHHHHHHHHh
Q 030919 93 IFKVYDSDGNGKVTFTDMLDVLRDL 117 (169)
Q Consensus 93 ~F~~~D~~~~g~Is~~e~~~~l~~~ 117 (169)
.|...|...+|.|+..|--.-+.+-
T Consensus 287 FfnsCD~~kDg~iS~~EWC~CF~k~ 311 (434)
T KOG3555|consen 287 FFNSCDTYKDGSISTNEWCYCFQKS 311 (434)
T ss_pred HHhhhcccccCccccchhhhhhccC
Confidence 9999999999999999988777654
No 121
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=87.26 E-value=4.3 Score=33.98 Aligned_cols=31 Identities=13% Similarity=0.238 Sum_probs=25.1
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHhcccCC
Q 030919 130 VLTDVLDEAGYTKDSLMILSDFVKILGNSGL 160 (169)
Q Consensus 130 ~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~~ 160 (169)
.+..+|..+|.|+||-++-.|+..+....|.
T Consensus 316 Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~ 346 (625)
T KOG1707|consen 316 FLVDVFEKFDRDNDGALSPEELKDLFSTAPG 346 (625)
T ss_pred HHHHHHHhccCCCCCCcCHHHHHHHhhhCCC
Confidence 3456688899999999999999888877665
No 122
>PF05383 La: La domain; InterPro: IPR006630 Human Ro ribonucleoproteins (RNPs) are composed of one of the four small Y RNAs and at least two proteins, Ro60 and La. The La protein is a 47 kDa polypeptide that frequently acts as an autoantigen in systemic lupus erythematosus and Sjogren's syndrome []. In the nucleus, La acts as a RNA polymerase III (RNAP III) transcription factor, while in the cytoplasm, La acts as a translation factor []. In the nucleus, La binds to the 3'UTR of nascent RNAP III transcripts to assist in folding and maturation []. In the cytoplasm, La recognises specific classes of mRNAs that contain a 5'-terminal oligopyrimidine (5'TOP) motif known to control protein synthesis []. The specific recognition is mediated by the N-terminal domain of La, which comprises a La motif and a RNA recognition motif (RRM). The La motif adopts an alpha/beta fold that comprises a winged-helix motif []. Homologous La domain-containing proteins have been identified in a wide range of organisms except Archaea, bacteria and viruses [].; PDB: 1S29_A 1YTY_B 2VOO_B 1S7A_A 2VOP_A 2VON_B 1ZH5_B 2VOD_A 2CQK_A.
Probab=85.74 E-value=1.2 Score=25.58 Aligned_cols=45 Identities=20% Similarity=0.286 Sum_probs=34.5
Q ss_pred HHHhcccCCHHHHHHHHHHHhhhcCCCCCCcCHHHhcChhHHHHH
Q 030919 17 QQHCNHAFSQQEIVSLYERFCQLDRNNGGFISAEEFLSVPEFARL 61 (169)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~l~~~el~~~~~~~~~ 61 (169)
++++-.+|++..+..=+-+...++.+++|.|+...+..++.+..+
T Consensus 2 ~~QvEfYFSd~NL~~D~fL~~~~~~~~~g~Vpi~~i~~F~r~k~l 46 (61)
T PF05383_consen 2 KKQVEFYFSDENLPRDKFLRSQMDSNPDGWVPISTILSFNRMKAL 46 (61)
T ss_dssp HHHHHHHTSHHHHCC-HHHHHHHCTTTTTBEEHHHHTTSHHHHHH
T ss_pred hhHHHHhcCHHHhCcCHHHHHHHHhcCCCcEeHHHHHchHHHHHH
Confidence 445556788888877666777788889999999999999766543
No 123
>PLN02222 phosphoinositide phospholipase C 2
Probab=85.43 E-value=5.4 Score=33.56 Aligned_cols=68 Identities=19% Similarity=0.300 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhhCCC-CCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhccc
Q 030919 86 LHQKIEFIFKVYDSDGNGKVTFTDMLDVLRDLTGTF-ISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILGNS 158 (169)
Q Consensus 86 ~~~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~ 158 (169)
....+..+|..+-. ++.+|.++|..+|...++.. .+.+.+..++... . .....+.++.+.|..+|.+.
T Consensus 23 ~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~-~--~~~~~~~~~~~gF~~yL~s~ 91 (581)
T PLN02222 23 APREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSA-S--SLLHRNGLHLDAFFKYLFGD 91 (581)
T ss_pred CcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhh-h--hhhhccCcCHHHHHHHhcCC
Confidence 34588999999864 47999999999999887653 5677777774442 1 11235679999999999874
No 124
>PLN02228 Phosphoinositide phospholipase C
Probab=85.23 E-value=5.2 Score=33.56 Aligned_cols=69 Identities=17% Similarity=0.351 Sum_probs=50.7
Q ss_pred CCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhhCCC-CCHHHHHHHHHHHHHhhCCC----CCCcccHHHHHHHhccc
Q 030919 84 ATLHQKIEFIFKVYDSDGNGKVTFTDMLDVLRDLTGTF-ISEKQREQVLTDVLDEAGYT----KDSLMILSDFVKILGNS 158 (169)
Q Consensus 84 ~~~~~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~d~~----~dg~i~~~eF~~~l~~~ 158 (169)
....+.+..+|..+-.+ +.++.++|..+|...++.. .+.+.+..+ +..+... ..|.++.+.|..+|.+.
T Consensus 20 ~~~~~ei~~if~~~s~~--~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i----~~~~~~~~~~~~~~~~~~~gF~~yl~s~ 93 (567)
T PLN02228 20 REPPVSIKRLFEAYSRN--GKMSFDELLRFVSEVQGERHAGLDYVQDI----FHSVKHHNVFHHHGLVHLNAFYRYLFSD 93 (567)
T ss_pred CCCcHHHHHHHHHhcCC--CccCHHHHHHHHHHhcCCccCCHHHHHHH----HHHhccchhhcccCccCHHHHHHHhcCc
Confidence 34668899999998643 5899999999999886654 445556666 5554322 34679999999999764
No 125
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=85.19 E-value=1.4 Score=34.06 Aligned_cols=62 Identities=21% Similarity=0.223 Sum_probs=42.5
Q ss_pred HHHhhhcCCCCCCcCHHHhcChhHHHHHHHHhccCCHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 030919 34 ERFCQLDRNNGGFISAEEFLSVPEFARLLRMVDGLNFKEFVAFLSAFSPHATLHQKIEFIFKVYDSDGNGKVTFTDMLDV 113 (169)
Q Consensus 34 ~~F~~~D~~~~g~l~~~el~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~Is~~e~~~~ 113 (169)
=.|..+|.|+++.|...|+.-+ ..++.. ......-.+.+|+..|.|+|-.||+.|++.-
T Consensus 337 w~F~qLdkN~nn~i~rrEwKpF------------------K~~l~k---~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~C 395 (421)
T KOG4578|consen 337 WYFNQLDKNSNNDIERREWKPF------------------KRVLLK---KSKPRKCSRKFFKYCDLNKDKKISLDEWRGC 395 (421)
T ss_pred eeeeeecccccCccchhhcchH------------------HHHHHh---hccHHHHhhhcchhcccCCCceecHHHHhhh
Confidence 3456666666666666665533 222222 2244567888999999999999999999988
Q ss_pred HHH
Q 030919 114 LRD 116 (169)
Q Consensus 114 l~~ 116 (169)
|..
T Consensus 396 L~~ 398 (421)
T KOG4578|consen 396 LGV 398 (421)
T ss_pred hcc
Confidence 854
No 126
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=85.13 E-value=3.4 Score=35.47 Aligned_cols=60 Identities=28% Similarity=0.537 Sum_probs=31.8
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHH
Q 030919 90 IEFIFKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKI 154 (169)
Q Consensus 90 ~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~ 154 (169)
+..+|...|++.+|.+++.+...++..+ ...+...-+..+ |++.+..+++++..++|.++
T Consensus 138 i~~~~~~ad~~~~~~~~~~~~~~~~~~~-n~~l~~~~~~~~----f~e~~~~~~~k~~~~~~~~~ 197 (746)
T KOG0169|consen 138 IHSIFQEADKNKNGHMSFDEVLDLLKQL-NVQLSESKARRL----FKESDNSQTGKLEEEEFVKF 197 (746)
T ss_pred HHHHHHHHccccccccchhhHHHHHHHH-HHhhhHHHHHHH----HHHHHhhccceehHHHHHHH
Confidence 4455666666666666666666665554 444444443333 44444455555555555443
No 127
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=83.26 E-value=1.9 Score=27.61 Aligned_cols=66 Identities=20% Similarity=0.337 Sum_probs=41.0
Q ss_pred HHhCCCCCCcccHHHHHHHHHH---------hhCCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhcccCCceee
Q 030919 95 KVYDSDGNGKVTFTDMLDVLRD---------LTGTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILGNSGLKMEV 164 (169)
Q Consensus 95 ~~~D~~~~g~Is~~e~~~~l~~---------~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~~~~~~ 164 (169)
++||+..+.+||.+++++++.. -.|..+|..-+-++ +-+...++...++-.-..+.++-.+-.|+-
T Consensus 10 RLYDT~tS~YITLedi~~lV~~g~~f~V~DakTgeDiT~~iL~QI----I~E~E~~g~~~lp~~~L~qlIr~yg~~~q~ 84 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVREGREFQVVDSKSGDDLTRSILLQI----IAEEESGGEPVLSTDFLTQIIRFYGGSMQS 84 (107)
T ss_pred cccCCCccceeeHHHHHHHHHCCCeEEEEECCCCchhHHHHHHHH----HHHHHhCCCCCCCHHHHHHHHHHhChhHHH
Confidence 4689999999999999999873 11444555544444 444434555666666555666555554433
No 128
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.16 E-value=3.1 Score=35.97 Aligned_cols=60 Identities=17% Similarity=0.152 Sum_probs=44.7
Q ss_pred HHHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhcccCC
Q 030919 93 IFKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILGNSGL 160 (169)
Q Consensus 93 ~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~~ 160 (169)
.|..+ +-+.|+||...-+.++.. ..++.--+-+ ++...|.|+||+++..||.=+|+-..+
T Consensus 21 qF~~L-kp~~gfitg~qArnfflq---S~LP~~VLaq----IWALsDldkDGrmdi~EfSIAmkLi~l 80 (1118)
T KOG1029|consen 21 QFGQL-KPGQGFITGDQARNFFLQ---SGLPTPVLAQ----IWALSDLDKDGRMDIREFSIAMKLIKL 80 (1118)
T ss_pred HHhcc-CCCCCccchHhhhhhHHh---cCCChHHHHH----HHHhhhcCccccchHHHHHHHHHHHHH
Confidence 34443 457899999999999854 3466655444 499999999999999999766655444
No 129
>cd08032 LARP_7 La RNA-binding domain of La-related protein 7. LARP7 is a component of the 7SK snRNP, a key factor in the regulation of RNA polymerase II transcription. 7SK functionality is dependent on the presence of LARP7, which is thought to stabilize the 7SK RNA by interacting with its 3' end. The release of 7SK RNA from P-TEFb/HEXIM/7SK complexes activates the cyclin-dependent kinase P-TEFb, which in turn phosphorylates the C-terminal domain of RNA pol II and mediates a transition into productive transcription elongation.
Probab=83.00 E-value=3.1 Score=25.46 Aligned_cols=49 Identities=10% Similarity=0.186 Sum_probs=40.5
Q ss_pred HhHHHHHHHhcccCCHHHHHHHHHHHhhhcCCCCCCcCHHHhcChhHHH
Q 030919 11 YDIEEVQQHCNHAFSQQEIVSLYERFCQLDRNNGGFISAEEFLSVPEFA 59 (169)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~l~~~el~~~~~~~ 59 (169)
..++.+.+++-.+||+..+..=.-+.+.++.+++|.|+.+-+..+..+.
T Consensus 4 ~l~~~I~~QvEfYFSd~NL~~D~fL~~~~~~~~dG~Vpl~~i~~F~rmk 52 (82)
T cd08032 4 QLLADIAKQVDFWFGDVNLHKDRFLREQIEKSRDGYIDISLLVSFNKMK 52 (82)
T ss_pred HHHHHHHHHHHhhcchhhcccCHHHHHHhcCCCCCCEeHHHHhcchHHH
Confidence 4567888888899999999877777788888899999999998885544
No 130
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=82.78 E-value=7.2 Score=26.38 Aligned_cols=83 Identities=12% Similarity=0.316 Sum_probs=43.1
Q ss_pred CCCccCCCCHHhHHHHHHHhcccCCHHHHHHHHHHHhhhcCCCCCCcCHHHhcChhHHHHHHHHhccCCHHHHHHHHHhh
Q 030919 1 MGNASSMLTQYDIEEVQQHCNHAFSQQEIVSLYERFCQLDRNNGGFISAEEFLSVPEFARLLRMVDGLNFKEFVAFLSAF 80 (169)
Q Consensus 1 mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~l~~~el~~~~~~~~~~~~~~~i~~~ef~~~~~~~ 80 (169)
|...-..|+|+++.++++.+. .+...++++-.-|+ ++|.+.... | -+.|+++.|..++...
T Consensus 1 ~~~~~~~lsp~eF~qLq~y~e--ys~kklkdvl~eF~-----~~g~~~~~~----~--------~~~Id~egF~~Fm~~y 61 (138)
T PF14513_consen 1 MAKEWVSLSPEEFAQLQKYSE--YSTKKLKDVLKEFH-----GDGSLAKYN----P--------EEPIDYEGFKLFMKTY 61 (138)
T ss_dssp -----S-S-HHHHHHHHHHHH--H----HHHHHHHH------HTSGGGGGE----E--------TTEE-HHHHHHHHHHH
T ss_pred CccceeccCHHHHHHHHHHHH--HHHHHHHHHHHHHh-----cCCcccccC----C--------CCCcCHHHHHHHHHHH
Confidence 344456789999999998853 45556555555443 355532111 1 0129999999999998
Q ss_pred CCCCCHHHHHHHHHHHhCCCCC
Q 030919 81 SPHATLHQKIEFIFKVYDSDGN 102 (169)
Q Consensus 81 ~~~~~~~~~~~~~F~~~D~~~~ 102 (169)
.+-..+++-.+..|..|-....
T Consensus 62 Le~d~P~~lc~hLF~sF~~~~~ 83 (138)
T PF14513_consen 62 LEVDLPEDLCQHLFLSFQKKPP 83 (138)
T ss_dssp TT-S--HHHHHHHHHHS-----
T ss_pred HcCCCCHHHHHHHHHHHhCccc
Confidence 8777888888999999966543
No 131
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=82.51 E-value=3.9 Score=34.95 Aligned_cols=85 Identities=19% Similarity=0.337 Sum_probs=63.0
Q ss_pred CCHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhhC---CCCCHHHHHHHHHHHHHhhCCCCCC
Q 030919 68 LNFKEFVAFLSAFSPHATLHQKIEFIFKVYDSDGNGKVTFTDMLDVLRDLTG---TFISEKQREQVLTDVLDEAGYTKDS 144 (169)
Q Consensus 68 i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~d~~~dg 144 (169)
++++++. ....+.+.+++..|..+|. ++|.++.+++..++..... .......+..+...++...|.+..|
T Consensus 4 ~~~~~~~------~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (646)
T KOG0039|consen 4 ISFQELK------ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKG 76 (646)
T ss_pred cchhhhc------ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccc
Confidence 4556665 3366788999999999998 9999999999988864321 1233445555666779999999999
Q ss_pred cccHHHHHHHhcccC
Q 030919 145 LMILSDFVKILGNSG 159 (169)
Q Consensus 145 ~i~~~eF~~~l~~~~ 159 (169)
.+.++++...+...+
T Consensus 77 y~~~~~~~~ll~~~~ 91 (646)
T KOG0039|consen 77 YITNEDLEILLLQIP 91 (646)
T ss_pred eeeecchhHHHHhch
Confidence 888888877776555
No 132
>PLN02223 phosphoinositide phospholipase C
Probab=82.21 E-value=12 Score=31.25 Aligned_cols=74 Identities=8% Similarity=-0.018 Sum_probs=56.0
Q ss_pred CHHHHHHHHHHHhCCCCCCcccHHHHHHHH---HHhhCC-CCCHHHHHHHHHHHHHhhC----CCCCCcccHHHHHHHhc
Q 030919 85 TLHQKIEFIFKVYDSDGNGKVTFTDMLDVL---RDLTGT-FISEKQREQVLTDVLDEAG----YTKDSLMILSDFVKILG 156 (169)
Q Consensus 85 ~~~~~~~~~F~~~D~~~~g~Is~~e~~~~l---~~~~~~-~~~~~~~~~~~~~~~~~~d----~~~dg~i~~~eF~~~l~ 156 (169)
...+.++.+|..| ..+.|.++.+.+..++ ...+++ ..+.++++.+++.++.... ....+.++.+.|..+|.
T Consensus 13 ~~p~~v~~~f~~~-~~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~ 91 (537)
T PLN02223 13 NQPDLILNFFGNE-FHGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLF 91 (537)
T ss_pred CCcHHHHHHHHHh-hcCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhc
Confidence 3557889999999 4678999999999988 666554 5778888888777765432 12235699999999998
Q ss_pred ccC
Q 030919 157 NSG 159 (169)
Q Consensus 157 ~~~ 159 (169)
+..
T Consensus 92 s~~ 94 (537)
T PLN02223 92 STE 94 (537)
T ss_pred Ccc
Confidence 865
No 133
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=80.76 E-value=6.6 Score=33.20 Aligned_cols=49 Identities=27% Similarity=0.547 Sum_probs=43.3
Q ss_pred HHHHHhcc-----CCHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCCCCCcccHHHH
Q 030919 60 RLLRMVDG-----LNFKEFVAFLSAFSPHATLHQKIEFIFKVYDSDGNGKVTFTDM 110 (169)
Q Consensus 60 ~~~~~~~~-----i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~Is~~e~ 110 (169)
++|..+|. ++|.+++.++..+. .+...+++...|+++|.+++ ....++.
T Consensus 559 rlF~l~D~s~~g~Ltf~~lv~gL~~l~-~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 559 RLFRLLDDSMTGLLTFKDLVSGLSILK-AGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHhcccCCcceeEHHHHHHHHHHHH-hhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 77888876 99999999998876 77888999999999999999 8888887
No 134
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=80.29 E-value=2.4 Score=26.80 Aligned_cols=26 Identities=19% Similarity=0.381 Sum_probs=18.6
Q ss_pred HHHHHHHHHhhhcCCCCCCcCHHHhcCh
Q 030919 28 EIVSLYERFCQLDRNNGGFISAEEFLSV 55 (169)
Q Consensus 28 ~~~~~~~~F~~~D~~~~g~l~~~el~~~ 55 (169)
.-..+...|..+-. +|+|+...|..+
T Consensus 28 ~W~~VE~RFd~La~--dG~L~rs~Fg~C 53 (100)
T PF08414_consen 28 GWKEVEKRFDKLAK--DGLLPRSDFGEC 53 (100)
T ss_dssp -HHHHHHHHHHH-B--TTBEEGGGHHHH
T ss_pred CHHHHHHHHHHhCc--CCcccHHHHHHh
Confidence 34567778888755 888888888876
No 135
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=80.24 E-value=2.5 Score=24.96 Aligned_cols=60 Identities=20% Similarity=0.225 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhh-CCC---CCCcccHHHHHHHh
Q 030919 86 LHQKIEFIFKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEA-GYT---KDSLMILSDFVKIL 155 (169)
Q Consensus 86 ~~~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-d~~---~dg~i~~~eF~~~l 155 (169)
..+.+..+|+.+ .++.++||.++|++.|. +++++.++..| ... +.+ .-|..+|..|++.+
T Consensus 4 s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~--------pe~aey~~~~M-p~~~~~~~~~~~~~~DY~~f~~~l 67 (69)
T PF08726_consen 4 SAEQVEEAFRAL-AGGKPYVTEEDLRRSLT--------PEQAEYCISRM-PPYEGPDGDAIPGAYDYESFTNSL 67 (69)
T ss_dssp TCHHHHHHHHHH-CTSSSCEEHHHHHHHS---------CCCHHHHHCCS-EC--SSS----TTEEECHHHHCCC
T ss_pred CHHHHHHHHHHH-HcCCCcccHHHHHHHcC--------cHHHHHHHHHC-cccCCCCcCCCCCCcCHHHHHHHH
Confidence 347889999999 77889999999998762 22333332221 221 111 22678888887543
No 136
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=80.00 E-value=18 Score=25.43 Aligned_cols=68 Identities=18% Similarity=0.193 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhhCCCCCHH-HHHHHHH--HHHHhhCCCCCCcccHHHHHHH
Q 030919 85 TLHQKIEFIFKVYDSDGNGKVTFTDMLDVLRDLTGTFISEK-QREQVLT--DVLDEAGYTKDSLMILSDFVKI 154 (169)
Q Consensus 85 ~~~~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~-~~~~~~~--~~~~~~d~~~dg~i~~~eF~~~ 154 (169)
-..++.+.+|..+++.+.+.+|..|+..++..- .....+- -+...+. -+... -.+.+|.+..|.-..+
T Consensus 93 Fvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~n-r~~~D~~GW~a~~~EW~~~y~L-~~d~dG~l~Ke~iR~v 163 (174)
T PF05042_consen 93 FVPQKFEEIFSKYAKTGPDALTLRELWRMLKGN-RNANDPFGWFAAFFEWGALYIL-AKDKDGFLSKEDIRGV 163 (174)
T ss_pred CCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhc-cccCCcchhhhhhhHHHHHHHH-HcCcCCcEeHHHHhhh
Confidence 345779999999999889999999999999753 1111110 0001111 11222 2467888888765543
No 137
>cd08033 LARP_6 La RNA-binding domain of La-related protein 6. This domain is found in animal and plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=78.55 E-value=3.1 Score=25.13 Aligned_cols=46 Identities=13% Similarity=0.251 Sum_probs=36.4
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHhhhcCCCCCCcCHHHhcChhHHH
Q 030919 14 EEVQQHCNHAFSQQEIVSLYERFCQLDRNNGGFISAEEFLSVPEFA 59 (169)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~l~~~el~~~~~~~ 59 (169)
+++.+++..+||+..+..=.-+.+.+..+++|.|+.+-+..++.+.
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fL~~~~~~~~dG~Vpl~~i~~F~rmk 47 (77)
T cd08033 2 QKIVKQVEYYFSDENLLKDAFLLKHVRRNKEGYVPIKLIASFKKVK 47 (77)
T ss_pred hHHHhHHHhhcCHhhhccCHHHHHHhccCCCCcEehHHHhcchHHH
Confidence 4667777788999999776666667777889999999999886554
No 138
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.18 E-value=5.6 Score=26.04 Aligned_cols=74 Identities=18% Similarity=0.335 Sum_probs=45.0
Q ss_pred cCCHHHHHHHHHHHhhhcCCCCCCcCHHHhcChhHHHHHHHHhcc-------CCHHHHHHHHHhhCCCCCHHHHHHHHHH
Q 030919 23 AFSQQEIVSLYERFCQLDRNNGGFISAEEFLSVPEFARLLRMVDG-------LNFKEFVAFLSAFSPHATLHQKIEFIFK 95 (169)
Q Consensus 23 ~~~~~~~~~~~~~F~~~D~~~~g~l~~~el~~~~~~~~~~~~~~~-------i~~~ef~~~~~~~~~~~~~~~~~~~~F~ 95 (169)
.+|+++++ ...|...|-|++|.+.--++.++-. -....-+. .+-.| .+.-+..+.+
T Consensus 62 ~mtpeqlq--fHYF~MHDldknn~lDGiEl~kAiT--H~H~~h~~ghep~Pl~sE~E-------------le~~iD~vL~ 124 (144)
T KOG4065|consen 62 KMTPEQLQ--FHYFSMHDLDKNNFLDGIELLKAIT--HTHDAHDSGHEPVPLSSEAE-------------LERLIDAVLD 124 (144)
T ss_pred hCCHHHHh--hhhhhhhccCcCCcchHHHHHHHHH--HHhhhhhcCCCCCCCCCHHH-------------HHHHHHHHhc
Confidence 47888876 4568889999999988877776511 00001111 11111 1122344556
Q ss_pred HhCCCCCCcccHHHHHHH
Q 030919 96 VYDSDGNGKVTFTDMLDV 113 (169)
Q Consensus 96 ~~D~~~~g~Is~~e~~~~ 113 (169)
--|.|++|+|+..||...
T Consensus 125 DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 125 DDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred ccccCCCceeeHHHHHhh
Confidence 678899999999998654
No 139
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=76.66 E-value=2.7 Score=27.39 Aligned_cols=34 Identities=9% Similarity=0.287 Sum_probs=22.1
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhccc
Q 030919 121 FISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILGNS 158 (169)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~ 158 (169)
.+++++.+.+ ++++-.|..|.|.|.+|+.-+...
T Consensus 3 iLtDeQFdrL----W~e~Pvn~~GrLkY~eFL~kfs~e 36 (118)
T PF08976_consen 3 ILTDEQFDRL----WNEMPVNAKGRLKYQEFLSKFSSE 36 (118)
T ss_dssp ---HHHHHHH----HTTS-B-TTS-EEHHHHHHHT---
T ss_pred cccHHHhhhh----hhhCcCCccCCEeHHHHHHHcccc
Confidence 3678886666 999999999999999999877644
No 140
>cd08029 LA_like_fungal La-motif domain of fungal proteins similar to the La autoantigen. This domain is found in fungal proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=76.01 E-value=4.4 Score=24.39 Aligned_cols=45 Identities=13% Similarity=0.241 Sum_probs=35.4
Q ss_pred HHHHHhcccCCHHHHHHHHHHHhhhcCCCCCCcCHHHhcChhHHH
Q 030919 15 EVQQHCNHAFSQQEIVSLYERFCQLDRNNGGFISAEEFLSVPEFA 59 (169)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~l~~~el~~~~~~~ 59 (169)
.+.+++-.+|++..+..=.-+-+.+..+++|.|+.+-+..++.+.
T Consensus 3 ~I~~QvEfYFSd~NL~~D~fLr~~~~~~~~G~Vpl~~i~~F~rmk 47 (76)
T cd08029 3 EIRKQVEFYFSDSNLPTDKFLWTLTGGSNNGWVPIKTIASFKRMR 47 (76)
T ss_pred HHHhhHHhhcCHhhhccCHHHHHHhccCCCCcEehHHHhCchHHH
Confidence 566677788999998766556666777899999999999887654
No 141
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=71.99 E-value=7.5 Score=17.18 Aligned_cols=17 Identities=35% Similarity=0.540 Sum_probs=12.7
Q ss_pred CCCCCCcccHHHHHHHH
Q 030919 98 DSDGNGKVTFTDMLDVL 114 (169)
Q Consensus 98 D~~~~g~Is~~e~~~~l 114 (169)
|.|++|.|+.-++..+-
T Consensus 1 DvN~DG~vna~D~~~lk 17 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALLK 17 (21)
T ss_dssp -TTSSSSSSHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHH
Confidence 67899999988876443
No 142
>smart00715 LA Domain in the RNA-binding Lupus La protein; unknown function.
Probab=71.22 E-value=11 Score=22.85 Aligned_cols=47 Identities=13% Similarity=0.224 Sum_probs=38.1
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHhhhcCCCCCCcCHHHhcChhHHHH
Q 030919 13 IEEVQQHCNHAFSQQEIVSLYERFCQLDRNNGGFISAEEFLSVPEFAR 60 (169)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~l~~~el~~~~~~~~ 60 (169)
.+.+.+++-.+||+..+..=.-+-+.++.+ +|.|+..-+..++.+..
T Consensus 4 ~~~i~~QvEfYFSd~NL~~D~fLr~~~~~~-~g~Vpl~~i~~F~r~k~ 50 (80)
T smart00715 4 KQKIKKQVEYYFSDENLPRDKFLRKKMDKN-DGYVPISTIASFKRVKS 50 (80)
T ss_pred HHHHHHHHHHHcCHhhhhhCHHHHHHhccC-CCCEEhHHHhCchhHHH
Confidence 456778888899999998777777788777 99999999998876553
No 143
>PRK05849 hypothetical protein; Provisional
Probab=68.50 E-value=62 Score=28.60 Aligned_cols=131 Identities=10% Similarity=0.074 Sum_probs=71.4
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHhhh---cCCCCCCcCHHHhcChhHHHHHHHHhcc---CCHHHHHHHHHhhCCCC--
Q 030919 13 IEEVQQHCNHAFSQQEIVSLYERFCQL---DRNNGGFISAEEFLSVPEFARLLRMVDG---LNFKEFVAFLSAFSPHA-- 84 (169)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~F~~~---D~~~~g~l~~~el~~~~~~~~~~~~~~~---i~~~ef~~~~~~~~~~~-- 84 (169)
-+.+.+.....||+++++++......+ -.++.+.+...++.++..+.+.+..+-. ..++....++-.+..++
T Consensus 371 ~~~~~~l~~~~fs~~e~~~~~~~l~~lT~~~i~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~l~~i~~lle~~~~~Gtl 450 (783)
T PRK05849 371 DKKLEELLPGGFSENEIKRIEFSLLKLTNRIISPKSGLFRKDLEKIEKLEERYKELLNSNLDPLDKIYWLLEDCKRYGTL 450 (783)
T ss_pred chHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhCCCCcccHhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhCCc
Confidence 345555566789999999998877765 2345556667778877666655555543 22222222222211111
Q ss_pred CHHHHHHHHHHHh----CCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHh
Q 030919 85 TLHQKIEFIFKVY----DSDGNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKIL 155 (169)
Q Consensus 85 ~~~~~~~~~F~~~----D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l 155 (169)
...-.++.+|=.. ..-..|.+|.++...+++.+ ..++.+-..++ ... |.+++++|+.--
T Consensus 451 ~Fa~~AR~~Fva~~~l~sl~~~g~~s~~~~~~f~~s~--~Tv~~~~~~D~----~~l------g~l~~~~FL~~Y 513 (783)
T PRK05849 451 PFAGIARAAFVATQLLKSLVEIGALSQEELDAFLNSL--NTVSKELSKDL----NSL------GELSKDEFLKRY 513 (783)
T ss_pred hhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHh--hHhHHHHHHHH----HHH------hccCHHHHHHHh
Confidence 1222233333221 12355888888888888765 22333332222 222 557888887543
No 144
>cd08030 LA_like_plant La-motif domain of plant proteins similar to the La autoantigen. This domain is found in plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=67.70 E-value=11 Score=23.47 Aligned_cols=48 Identities=17% Similarity=0.216 Sum_probs=37.9
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHhhhcCCCCCCcCHHHhcChhHHHHH
Q 030919 14 EEVQQHCNHAFSQQEIVSLYERFCQLDRNNGGFISAEEFLSVPEFARL 61 (169)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~l~~~el~~~~~~~~~ 61 (169)
+++++++..+|++..+..=.-+.+.+..+++|.|+.+-+..+..+..+
T Consensus 3 ~~i~~QvEfYFSd~NL~~D~fL~~~~~~~~dG~V~i~~i~~F~rmk~l 50 (90)
T cd08030 3 EKVLRQVEFYFSDSNLPRDDFLLEEVEEDPDGMVSLALICSFSRMRSL 50 (90)
T ss_pred HHHHHHHHcccchhhcccCHHHHHHhccCCCCCEehHHHhcChHHHHH
Confidence 456777778899999987666677777788999999999988766543
No 145
>cd08028 LARP_3 La RNA-binding domain of La-related protein 3. This domain is found at the N-terminus of the La autoantigen and similar proteins, and co-occurs with an RNA-recognition motif (RRM). Together these domains function to bind primary transcripts of RNA polymerase III at their 3' terminus and protect them from exonucleolytic degradation. Binding is specific for the 3'-terminal UUU-OH motif. The La autoantigen is also called Lupus La protein, LARP3, or Sjoegren syndrome type B antigen (SS-B).
Probab=66.37 E-value=10 Score=23.16 Aligned_cols=46 Identities=11% Similarity=0.152 Sum_probs=35.8
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHhhhcCCCCCCcCHHHhcChhHHHH
Q 030919 14 EEVQQHCNHAFSQQEIVSLYERFCQLDRNNGGFISAEEFLSVPEFAR 60 (169)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~l~~~el~~~~~~~~ 60 (169)
..+.+++..+||+..+..=.-+.+.++.+ +|.|+.+-+..++.+..
T Consensus 6 ~~I~~QvEfYFSd~NL~~D~fLr~~m~~~-~G~Vpl~~i~~F~rmk~ 51 (82)
T cd08028 6 KKIIRQIEYYFGDFNLPRDKFLKEQIKED-DGWVPMEVMLKFNRLKS 51 (82)
T ss_pred HHHHHHHHhhcCHhhhccCHHHHHHHhcc-CCCEEhHHHhCChhHHH
Confidence 46777777889999997766666677655 99999999998866543
No 146
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=65.99 E-value=36 Score=22.58 Aligned_cols=68 Identities=9% Similarity=0.114 Sum_probs=42.9
Q ss_pred HHHHHHHHHhCCCC--CCcccHHHHHHHHHHhh------CCCCCH-------HHHHHHHHHHHHhhCCCCCCcccHHHHH
Q 030919 88 QKIEFIFKVYDSDG--NGKVTFTDMLDVLRDLT------GTFISE-------KQREQVLTDVLDEAGYTKDSLMILSDFV 152 (169)
Q Consensus 88 ~~~~~~F~~~D~~~--~g~Is~~e~~~~l~~~~------~~~~~~-------~~~~~~~~~~~~~~d~~~dg~i~~~eF~ 152 (169)
..+..+|+....+. +..|+..++..++..++ .+...+ .-++-++.++++-+|.+..|+|+--.|.
T Consensus 41 ~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~K 120 (127)
T PF09068_consen 41 SNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSFK 120 (127)
T ss_dssp HHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHHH
T ss_pred HHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHHH
Confidence 34566677665543 46799999999987654 122221 3345567889999999999999988887
Q ss_pred HHh
Q 030919 153 KIL 155 (169)
Q Consensus 153 ~~l 155 (169)
.++
T Consensus 121 vaL 123 (127)
T PF09068_consen 121 VAL 123 (127)
T ss_dssp HHH
T ss_pred HHH
Confidence 655
No 147
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=63.81 E-value=35 Score=21.67 Aligned_cols=64 Identities=11% Similarity=0.167 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhc
Q 030919 86 LHQKIEFIFKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILG 156 (169)
Q Consensus 86 ~~~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~ 156 (169)
....++.-|..+-. +|.++...|.+.+ |..-+.+=+.++.+-+-+.-... .+.|+.+|+..+..
T Consensus 28 ~W~~VE~RFd~La~--dG~L~rs~Fg~CI----GM~dSkeFA~eLFdALaRrr~i~-~~~I~k~eL~efW~ 91 (100)
T PF08414_consen 28 GWKEVEKRFDKLAK--DGLLPRSDFGECI----GMKDSKEFAGELFDALARRRGIK-GDSITKDELKEFWE 91 (100)
T ss_dssp -HHHHHHHHHHH-B--TTBEEGGGHHHHH----T--S-HHHHHHHHHHHHHHTT---SSEE-HHHHHHHHH
T ss_pred CHHHHHHHHHHhCc--CCcccHHHHHHhc----CCcccHHHHHHHHHHHHHhcCCc-cCCcCHHHHHHHHH
Confidence 45677788888876 7899998888877 54444555555533333333333 45788888776654
No 148
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=63.28 E-value=4.5 Score=35.71 Aligned_cols=64 Identities=17% Similarity=0.186 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhc
Q 030919 86 LHQKIEFIFKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILG 156 (169)
Q Consensus 86 ~~~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~ 156 (169)
....+..+|...|.+.+|.|+..+.+..+.. .+++...+..+ +...|..+.|.+++.+|.-.+-
T Consensus 281 d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~---~gl~~~~l~~~----w~l~d~~n~~~ls~~ef~~~~~ 344 (847)
T KOG0998|consen 281 DKQKYSKIFSQVDKDNDGSISSNEARNIFLP---FGLSKPRLAHV----WLLADTQNTGTLSKDEFALAMH 344 (847)
T ss_pred HHHHHHHHHHhccccCCCccccccccccccc---CCCChhhhhhh----hhhcchhccCcccccccchhhh
Confidence 3455677899999999999999999998865 44667664444 8999999999999998865443
No 149
>cd07323 LAM LA motif RNA-binding domain. This domain is found at the N-terminus of La RNA-binding proteins as well as in other related proteins. Typically, the domain co-occurs with an RNA-recognition motif (RRM), and together these domains function to bind primary transcripts of RNA polymerase III in the La autoantigen (Lupus La protein, LARP3, or Sjoegren syndrome type B antigen, SS-B). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=61.35 E-value=15 Score=21.91 Aligned_cols=44 Identities=11% Similarity=0.207 Sum_probs=32.9
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHhhhcCCCCCCcCHHHhcChhHHH
Q 030919 14 EEVQQHCNHAFSQQEIVSLYERFCQLDRNNGGFISAEEFLSVPEFA 59 (169)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~l~~~el~~~~~~~ 59 (169)
+.+.+++..+||+..+..=.-+-+.+ +++|.|+.+-+.+++.+.
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fL~~~~--~~~g~Vpl~~i~~F~r~k 45 (75)
T cd07323 2 EKIKKQVEYYFSDENLCKDRFLRSLM--DDDGWVPLSLLASFNRVK 45 (75)
T ss_pred hHHHhhhHhccCHhhhCcCHHHHHhc--CCCCCEEHHHHhCchHHH
Confidence 35667777889999987654444555 788999999999987654
No 150
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=61.05 E-value=12 Score=24.83 Aligned_cols=92 Identities=15% Similarity=0.282 Sum_probs=46.4
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHhhhcCCCC--CCcCHHHhcChhHHHHHHHHhcc-----CCHHHH-HHHHHhhCCCCC
Q 030919 14 EEVQQHCNHAFSQQEIVSLYERFCQLDRNNG--GFISAEEFLSVPEFARLLRMVDG-----LNFKEF-VAFLSAFSPHAT 85 (169)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~--g~l~~~el~~~~~~~~~~~~~~~-----i~~~ef-~~~~~~~~~~~~ 85 (169)
..+++.+. +..=++..+.++|+.+..+.. ..++..++..+ +..+|..+.. ...... + ...
T Consensus 27 R~lQk~~~--l~lv~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~--L~~iy~~l~~~~p~~~~i~~~~v--------~~a 94 (127)
T PF09068_consen 27 RFLQKRLC--LDLVDLSNVIEAFREHGLNQSNDSSLSVSQLETL--LSSIYEFLNKRLPTLHQIPSRPV--------DLA 94 (127)
T ss_dssp HHHHHHTT--GGG--HHHHHHHHHHTT---T-TSEEEHHHHHHH--HHHHHHHHHHHSTTS--HH-------------HH
T ss_pred HHHHHHHh--heeeeHHHHHHHHHHcCCCcccCCCCCHHHHHHH--HHHHHHHHHHHCCCCCCCCchhH--------HHH
Confidence 34555532 444455566777777655433 45666666644 1244433322 111100 0 001
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q 030919 86 LHQKIEFIFKVYDSDGNGKVTFTDMLDVLRDL 117 (169)
Q Consensus 86 ~~~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~ 117 (169)
.+--+.+....||+.++|.|+.-.++.++..+
T Consensus 95 ~~L~ln~Ll~vyD~~rtG~I~vls~KvaL~~L 126 (127)
T PF09068_consen 95 VDLLLNWLLNVYDSQRTGKIRVLSFKVALITL 126 (127)
T ss_dssp HHHHHHHHHHHH-TT--SEEEHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCCCeeehhHHHHHHHHh
Confidence 12346788999999999999999999887643
No 151
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=60.54 E-value=39 Score=21.06 Aligned_cols=71 Identities=15% Similarity=0.204 Sum_probs=41.5
Q ss_pred HHHHHHHhhhcCCCCCCcCHHHhcCh-hHHHHHHHHhcc-CCHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCCCCCcccH
Q 030919 30 VSLYERFCQLDRNNGGFISAEEFLSV-PEFARLLRMVDG-LNFKEFVAFLSAFSPHATLHQKIEFIFKVYDSDGNGKVTF 107 (169)
Q Consensus 30 ~~~~~~F~~~D~~~~g~l~~~el~~~-~~~~~~~~~~~~-i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~Is~ 107 (169)
..++-+|..+ .|++|.++...|..+ .++.++-..+.. -+| +..+..++.+|..- .....|+.
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aF-------------g~~e~sv~sCF~~~--~~~~~I~~ 66 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAF-------------GYIEPSVRSCFQQV--QLSPKITE 66 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGG-------------T--HHHHHHHHHHT--TT-S-B-H
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccc-------------cCcHHHHHHHhccc--CCCCccCH
Confidence 3466778888 889999999999977 344444444433 111 11456677778775 35567999
Q ss_pred HHHHHHHHH
Q 030919 108 TDMLDVLRD 116 (169)
Q Consensus 108 ~e~~~~l~~ 116 (169)
++|-+++..
T Consensus 67 ~~Fl~wl~~ 75 (90)
T PF09069_consen 67 NQFLDWLMS 75 (90)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999888864
No 152
>PLN02952 phosphoinositide phospholipase C
Probab=60.36 E-value=29 Score=29.50 Aligned_cols=54 Identities=9% Similarity=-0.009 Sum_probs=39.1
Q ss_pred CCCcccHHHHHHHHHHhhC-CCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhcccC
Q 030919 101 GNGKVTFTDMLDVLRDLTG-TFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILGNSG 159 (169)
Q Consensus 101 ~~g~Is~~e~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~ 159 (169)
+.|.+++++|..+.+.+.. ...+..++..+ |..+-. +++.++.++|..+|...+
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~l----f~~~~~-~~~~mt~~~l~~FL~~~Q 67 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDV----FCKFSV-GGGHMGADQLRRFLVLHQ 67 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHH----HHHHhC-CCCccCHHHHHHHHHHhC
Confidence 4589999999888877621 22367776666 887753 446899999999987644
No 153
>COG5394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.78 E-value=15 Score=25.53 Aligned_cols=69 Identities=19% Similarity=0.355 Sum_probs=36.4
Q ss_pred HHhCCCCCCcccHHHHHHHHHHh---------hCCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhcccCCceeee
Q 030919 95 KVYDSDGNGKVTFTDMLDVLRDL---------TGTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILGNSGLKMEVE 165 (169)
Q Consensus 95 ~~~D~~~~g~Is~~e~~~~l~~~---------~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~~~~~~~ 165 (169)
++|++..+-+||.+++..+++.- .|+.++..-+-++ +|++-..+|..-+...-..+.+.=-+-.|++.
T Consensus 19 RLYnT~TSTYVTL~dla~mVk~gedF~V~DAKsgeDiT~sVLtQI---IfEeE~k~G~~llpi~fLrQlI~fYGdqMQ~~ 95 (193)
T COG5394 19 RLYNTGTSTYVTLEDLAQMVKEGEDFRVQDAKSGEDITHSVLTQI---IFEEENKGGQNLLPISFLRQLISFYGDQMQMV 95 (193)
T ss_pred hhcccCCceeeeHHHHHHHHhcCCceEEeeccccchhhHHHHHHH---HHHHhccCCCccccHHHHHHHHHHHhHHHHHH
Confidence 46777778889999998888741 0334444444444 35554444444443333333333333344433
Q ss_pred c
Q 030919 166 V 166 (169)
Q Consensus 166 ~ 166 (169)
|
T Consensus 96 v 96 (193)
T COG5394 96 V 96 (193)
T ss_pred H
Confidence 3
No 154
>KOG2557 consensus Uncharacterized conserved protein, contains TLDc domain [Function unknown]
Probab=59.31 E-value=91 Score=24.93 Aligned_cols=49 Identities=18% Similarity=0.323 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q 030919 68 LNFKEFVAFLSAFSPHATLHQKIEFIFKVYDSDGNGKVTFTDMLDVLRDL 117 (169)
Q Consensus 68 i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~ 117 (169)
++++.+...... .+.+...+..+.++...|.+++|..+...+.+.+...
T Consensus 75 ~~l~k~~~~~~~-~~~gt~dq~a~mL~~~~~~sgn~~~~~~q~eQ~~~~v 123 (427)
T KOG2557|consen 75 MTLEKLVIAKAT-YEKGTDDQIAEMLYQTLDVNGNGVLSRSQLEQFLVVV 123 (427)
T ss_pred chHHHHhhHHhh-hccCcccHHHHHHHHHHhhccccccchhHHHHHHHHH
Confidence 666666544333 3366777788888999999999999999999888754
No 155
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=58.98 E-value=1.1e+02 Score=27.49 Aligned_cols=141 Identities=16% Similarity=0.216 Sum_probs=75.3
Q ss_pred HHHhcccCCHHHHHH-HHHHHhhhcCCCCCCcCHHHhcCh-hH----------HHHHHHHh----ccCCHHHHHHHHHhh
Q 030919 17 QQHCNHAFSQQEIVS-LYERFCQLDRNNGGFISAEEFLSV-PE----------FARLLRMV----DGLNFKEFVAFLSAF 80 (169)
Q Consensus 17 ~~~~~~~~~~~~~~~-~~~~F~~~D~~~~g~l~~~el~~~-~~----------~~~~~~~~----~~i~~~ef~~~~~~~ 80 (169)
.+.+....++-+|.. ++..+..+|......++..++..+ +. +.+-|... +.++|.+|..+...+
T Consensus 130 ~~dtl~a~~p~qI~~wlrk~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~ted~~~k~dlsf~~f~~ly~~l 209 (1267)
T KOG1264|consen 130 HQDTLNAPTPLQIERWLRKQIYSVDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFTEDGARKDDLSFEQFHLLYKKL 209 (1267)
T ss_pred hhhhccCCChHHHHHHHHhhheeccchhhhheeHHhhhcccccceEEechHHHHHHHHhHhhhccccccHHHHHHHHHHH
Confidence 344445678888877 466777787777777999999987 11 11111111 229999998887664
Q ss_pred CCCCCHHH--HHHHHHH--HhCCCCCCcccHHHHHHHHHHhhCCCCCHH--HHHHHHHHHHHhhC-CCCCCcccHHHHHH
Q 030919 81 SPHATLHQ--KIEFIFK--VYDSDGNGKVTFTDMLDVLRDLTGTFISEK--QREQVLTDVLDEAG-YTKDSLMILSDFVK 153 (169)
Q Consensus 81 ~~~~~~~~--~~~~~F~--~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~d-~~~dg~i~~~eF~~ 153 (169)
.-...... .....|- .-+....-.+++.+|..+|..-+...+..+ .++..........- .-..-.++..||+.
T Consensus 210 mfs~~~a~l~e~~~~~~~~~~~~~d~~vV~~~ef~rFL~~~Q~e~~Asdr~av~~~~r~F~~D~~re~~EPyl~v~EFv~ 289 (1267)
T KOG1264|consen 210 MFSQQKAILLEFKKDFILGNTDRPDASVVYLQEFQRFLIHEQQEHWASDRNAVREFMRKFIDDTMRETAEPYLFVDEFVT 289 (1267)
T ss_pred hhccchhhhhcccchhhhcCCCCccceEeeHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHhhhhhhccCcceeHHHHHH
Confidence 31111111 1111111 112222357999999999975443333222 22222222111110 01234789999998
Q ss_pred Hhcc
Q 030919 154 ILGN 157 (169)
Q Consensus 154 ~l~~ 157 (169)
+|-+
T Consensus 290 fLFS 293 (1267)
T KOG1264|consen 290 FLFS 293 (1267)
T ss_pred HHhh
Confidence 8743
No 156
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.56 E-value=9.5 Score=30.19 Aligned_cols=34 Identities=18% Similarity=0.346 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q 030919 84 ATLHQKIEFIFKVYDSDGNGKVTFTDMLDVLRDL 117 (169)
Q Consensus 84 ~~~~~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~ 117 (169)
....+.++.+|..+|+.++|+|+-.-++.++..+
T Consensus 305 ~~~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~ 338 (449)
T KOG2871|consen 305 ENPSEQLRRNFHAYDPEDNNFISCSGLQIVMTAL 338 (449)
T ss_pred CCCCHHHHhhhhccCccCCCeeecHHHHHHHHHh
Confidence 4567889999999999999999999999999876
No 157
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=57.09 E-value=51 Score=21.34 Aligned_cols=44 Identities=20% Similarity=0.287 Sum_probs=35.3
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhh
Q 030919 90 IEFIFKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEA 138 (169)
Q Consensus 90 ~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 138 (169)
+..+|-+++.-|+...+..+++.+|... |....++.++-+ +..+
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sV-G~E~d~e~i~~v----isel 46 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESV-GAEIDDERINLV----LSEL 46 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHh-CcccCHHHHHHH----HHHh
Confidence 3456777778888899999999999998 999999886666 5554
No 158
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=55.97 E-value=64 Score=22.13 Aligned_cols=34 Identities=26% Similarity=0.539 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q 030919 84 ATLHQKIEFIFKVYDSDGNGKVTFTDMLDVLRDL 117 (169)
Q Consensus 84 ~~~~~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~ 117 (169)
......+..+|..+-..+...|++++|..+|..+
T Consensus 37 k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~l 70 (154)
T PF05517_consen 37 KLTSTDVDIIFSKVKAKGARKITFEQFLEALAEL 70 (154)
T ss_dssp SS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHH
Confidence 3555677788888766666678888888888654
No 159
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=55.70 E-value=40 Score=19.87 Aligned_cols=48 Identities=23% Similarity=0.429 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhhC
Q 030919 68 LNFKEFVAFLSAFSPHATLHQKIEFIFKVYDSDGNGKVTFTDMLDVLRDLTG 119 (169)
Q Consensus 68 i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~ 119 (169)
+.|...+..+....+ ......+...|+.=..+.|+.+||...++...|
T Consensus 9 ~~F~~L~~~l~~~l~----~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVG 56 (70)
T PF12174_consen 9 MPFPMLFSALSKHLP----PSKMDLLQKHYEEFKKKKISREEFVRKLRQIVG 56 (70)
T ss_pred ccHHHHHHHHHHHCC----HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 555555555555432 234444445554446789999999999988745
No 160
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=54.78 E-value=8 Score=27.89 Aligned_cols=59 Identities=14% Similarity=0.314 Sum_probs=43.8
Q ss_pred HHHHHHHhCCC-CCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHh
Q 030919 90 IEFIFKVYDSD-GNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKIL 155 (169)
Q Consensus 90 ~~~~F~~~D~~-~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l 155 (169)
+.+-|-.+|+. .+|++|-.|+.-+- .+-++.+.+ +...|...|.|+||.|+..||-..+
T Consensus 189 v~wqf~qld~~p~d~~~sh~el~pl~----ap~ipme~c---~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 189 VHWQFGQLDQHPIDGYLSHTELAPLR----APLIPMEHC---TTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred eeeeeccccCCCcccccccccccccc----CCcccHHhh---chhhhhcccCCCCCceeHHHhhccc
Confidence 34557777775 67999988876432 455666665 5566999999999999999997654
No 161
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=53.20 E-value=46 Score=21.12 Aligned_cols=55 Identities=7% Similarity=0.068 Sum_probs=36.3
Q ss_pred CcccHHHHHHHHHHhhCCCCCHHHHHHHHH---HHHHhhCCCCCCcccHHHHHHHhcccCCceeee
Q 030919 103 GKVTFTDMLDVLRDLTGTFISEKQREQVLT---DVLDEAGYTKDSLMILSDFVKILGNSGLKMEVE 165 (169)
Q Consensus 103 g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~d~~~dg~i~~~eF~~~l~~~~~~~~~~ 165 (169)
-.+|.+|+..++..+ |. +++++ ..++.++.+....++-++.+.++.++|.++.=+
T Consensus 34 ~p~s~~eL~~~l~~~-g~-------~~li~~~~~~yk~l~l~~~~~~s~~e~~~~l~~~p~LikRP 91 (105)
T cd03035 34 DGLDAATLERWLAKV-GW-------ETLLNKRGTTWRKLDDAQKAALDAAKAIALMLEHPSLIKRP 91 (105)
T ss_pred CCCCHHHHHHHHHHh-Ch-------HHHHccCchHHHhCChhhhccCCHHHHHHHHHhCcCeeecc
Confidence 468889999988865 51 22221 235555444224578899999999999977644
No 162
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=51.68 E-value=12 Score=21.64 Aligned_cols=22 Identities=23% Similarity=0.678 Sum_probs=19.6
Q ss_pred HHhCCCCCCcccHHHHHHHHHH
Q 030919 95 KVYDSDGNGKVTFTDMLDVLRD 116 (169)
Q Consensus 95 ~~~D~~~~g~Is~~e~~~~l~~ 116 (169)
++||...+.+||.+++++++..
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHC
Confidence 4789999999999999999873
No 163
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=50.69 E-value=21 Score=30.08 Aligned_cols=72 Identities=15% Similarity=0.274 Sum_probs=48.9
Q ss_pred CCHHHHHHHHHHHhhhcCCCCCCcCHHHhcChhHHHHHHHHhccCCHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCCCCC
Q 030919 24 FSQQEIVSLYERFCQLDRNNGGFISAEEFLSVPEFARLLRMVDGLNFKEFVAFLSAFSPHATLHQKIEFIFKVYDSDGNG 103 (169)
Q Consensus 24 ~~~~~~~~~~~~F~~~D~~~~g~l~~~el~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g 103 (169)
++++++..++..|..+|.+..|+.+.++..+..+ ... .+-....+....+..|.+-+|
T Consensus 587 ~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk---------------------~~~-~~~d~~~~~~~l~ea~~~~~g 644 (680)
T KOG0042|consen 587 LTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLK---------------------SEN-VGWDEDRLHEELQEADENLNG 644 (680)
T ss_pred cCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH---------------------Hhc-CCCCHHHHHHHHHHHHHhhcc
Confidence 5888888899999999998888877776664421 111 122334455555566666678
Q ss_pred cccHHHHHHHHHHh
Q 030919 104 KVTFTDMLDVLRDL 117 (169)
Q Consensus 104 ~Is~~e~~~~l~~~ 117 (169)
.+...|+.+++...
T Consensus 645 ~v~l~e~~q~~s~~ 658 (680)
T KOG0042|consen 645 FVELREFLQLMSAI 658 (680)
T ss_pred eeeHHHHHHHHHHH
Confidence 88888888877765
No 164
>COG5562 Phage envelope protein [General function prediction only]
Probab=50.24 E-value=10 Score=25.39 Aligned_cols=51 Identities=12% Similarity=0.277 Sum_probs=31.8
Q ss_pred CCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhcccCC
Q 030919 101 GNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILGNSGL 160 (169)
Q Consensus 101 ~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~~ 160 (169)
.+|.|.....+.+..- .......- +.... ..+..|..+|+||+..+..+|+
T Consensus 53 ~~~~Il~~g~k~~~~V--~~~~n~~~----i~~al---~~~qsGqttF~ef~~~la~AGV 103 (137)
T COG5562 53 SDGVILIKGVKKVVGV--AEVFNTTL----IKTAL---RRHQSGQTTFEEFCSALAEAGV 103 (137)
T ss_pred cCCEEEeeccccccce--ecccCHHH----HHHHH---HHHhcCCccHHHHHHHHHhCCe
Confidence 3466666666555432 12222222 33323 3477899999999999999998
No 165
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=49.61 E-value=47 Score=26.00 Aligned_cols=44 Identities=16% Similarity=0.338 Sum_probs=29.6
Q ss_pred CCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHh
Q 030919 101 GNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKIL 155 (169)
Q Consensus 101 ~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l 155 (169)
..|.||++|-...+... ....+++.++.+ ++.++ |+-+||-..+
T Consensus 299 R~G~itReeal~~v~~~-d~~~~~~~~~~~----~~~lg------~t~~ef~~~~ 342 (343)
T TIGR03573 299 RSGRITREEAIELVKEY-DGEFPKEDLEYF----LKYLG------ISEEEFWKTV 342 (343)
T ss_pred HcCCCCHHHHHHHHHHh-cccccHHHHHHH----HHHhC------CCHHHHHHHh
Confidence 45888888888887775 555556665555 56554 6677777654
No 166
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=48.47 E-value=32 Score=21.44 Aligned_cols=52 Identities=15% Similarity=0.186 Sum_probs=24.8
Q ss_pred CCCcccHHHHHHHHHHhhC-CCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhc
Q 030919 101 GNGKVTFTDMLDVLRDLTG-TFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILG 156 (169)
Q Consensus 101 ~~g~Is~~e~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~ 156 (169)
-||.++..|...+-..+.. ..+++.+.+.++ ..+........++.+|.+.+.
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~----~~~~~~~~~~~~~~~~~~~~~ 64 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELL----AEAEALEEEAPDLYEFTSLIK 64 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHH----HHHHHHHHhCCCHHHHHHHHH
Confidence 3567777766554433211 245566655552 222222233345556655544
No 167
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=45.98 E-value=75 Score=20.06 Aligned_cols=63 Identities=13% Similarity=0.180 Sum_probs=41.1
Q ss_pred CCHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHH
Q 030919 68 LNFKEFVAFLSAFSPHATLHQKIEFIFKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQVL 131 (169)
Q Consensus 68 i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~ 131 (169)
+.-.+|..++.-+. +...++.+..+-..+-..+...++..++..++....+...++++++.+.
T Consensus 20 vP~~Dy~PLlALL~-r~Ltd~ev~~Va~~L~~~~~~~~~~~dI~~~I~~vt~~~P~~~di~RV~ 82 (96)
T PF11829_consen 20 VPPTDYVPLLALLR-RRLTDDEVAEVAAELAARGDPPVDRIDIGVAITRVTDELPTPEDIERVR 82 (96)
T ss_dssp B-HHHHHHHHHHHT-TTS-HHHHHHHHHHHHHHTSS-BSCCHHHHHHHHHCSS-S-HHHHHHHH
T ss_pred CCCCccHHHHHHhc-ccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCcCHHHHHHHH
Confidence 56666776666654 4466677777777776666666788888888888767777888876653
No 168
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.27 E-value=34 Score=27.52 Aligned_cols=55 Identities=18% Similarity=0.221 Sum_probs=36.9
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHH
Q 030919 90 IEFIFKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKDSLMILSDFV 152 (169)
Q Consensus 90 ~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~ 152 (169)
...+|..+.. -+|.||...-+.-+- +..+++.- +-++++..|.|.||.++-+||.
T Consensus 446 yde~fy~l~p-~~gk~sg~~ak~~mv---~sklpnsv----lgkiwklad~d~dg~ld~eefa 500 (532)
T KOG1954|consen 446 YDEIFYTLSP-VNGKLSGRNAKKEMV---KSKLPNSV----LGKIWKLADIDKDGMLDDEEFA 500 (532)
T ss_pred hHhhhhcccc-cCceeccchhHHHHH---hccCchhH----HHhhhhhhcCCcccCcCHHHHH
Confidence 3445554432 457777666555442 34566665 4455999999999999999996
No 169
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=44.64 E-value=19 Score=25.12 Aligned_cols=52 Identities=12% Similarity=0.223 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHh
Q 030919 84 ATLHQKIEFIFKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDE 137 (169)
Q Consensus 84 ~~~~~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 137 (169)
-.....+..+++++-.++...++..+|.....- |..+++++++..+..++..
T Consensus 81 lkt~~Ql~AA~~Yl~~~~~~~~d~~~Fe~~cGV--GV~VT~E~I~~~V~~~i~~ 132 (164)
T PF04558_consen 81 LKTNLQLDAALKYLKSNPSEPIDVAEFEKACGV--GVVVTPEQIEAAVEKYIEE 132 (164)
T ss_dssp --SHHHHHHHHHHHHHHGG-G--HHHHHHTTTT--T----HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHcCC--CeEECHHHHHHHHHHHHHH
Confidence 345678889999887777778999999988753 6789999999988877765
No 170
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=44.64 E-value=91 Score=20.64 Aligned_cols=49 Identities=16% Similarity=0.313 Sum_probs=34.9
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHH
Q 030919 82 PHATLHQKIEFIFKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQVLTD 133 (169)
Q Consensus 82 ~~~~~~~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~ 133 (169)
+......++..+|++|-. +.|+.+.+..++....|..++..++..+++.
T Consensus 31 ~d~tf~~Kl~~Il~mFl~---~eid~e~~y~l~~~~d~~~LT~~Qi~Yl~~~ 79 (122)
T PF06648_consen 31 RDETFLDKLIKILKMFLN---DEIDVEDMYNLFGAVDGLKLTRSQIDYLYNR 79 (122)
T ss_pred cCchHHHHHHHHHHHHHh---CCCCHHHHHHHHhcccHhhcCHHHHHHHHHH
Confidence 345566778888888853 5788888888887664567888887666443
No 171
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=43.78 E-value=90 Score=20.32 Aligned_cols=38 Identities=13% Similarity=0.177 Sum_probs=29.6
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHH
Q 030919 92 FIFKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQV 130 (169)
Q Consensus 92 ~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~ 130 (169)
.+|-+.-.-|+..+|.+++..++... +..+.+..+.-+
T Consensus 7 aAYlL~~lgG~~~pTaddI~kIL~Aa-GveVd~~~~~l~ 44 (112)
T PTZ00373 7 AAYLMCVLGGNENPTKKEVKNVLSAV-NADVEDDVLDNF 44 (112)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHc-CCCccHHHHHHH
Confidence 34555555677789999999999998 888888886666
No 172
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=43.67 E-value=1.3e+02 Score=26.49 Aligned_cols=92 Identities=15% Similarity=0.162 Sum_probs=57.4
Q ss_pred HHHHHhcc-----CCHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHH-------H------hhCCC
Q 030919 60 RLLRMVDG-----LNFKEFVAFLSAFSPHATLHQKIEFIFKVYDSDGNGKVTFTDMLDVLR-------D------LTGTF 121 (169)
Q Consensus 60 ~~~~~~~~-----i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~Is~~e~~~~l~-------~------~~~~~ 121 (169)
-+.+.+|. |...+|...+..++ ..-.+++++.+|......+.-.+ ...|..+|. . +-|.+
T Consensus 474 ~llNvyD~~R~g~irvls~ki~~i~lc-k~~leek~~ylF~~vA~~~sq~~-q~~l~lLL~dliqipr~lGE~aAfGgsN 551 (966)
T KOG4286|consen 474 WLLNVYDTGRTGRIRVLSFKIGIISLC-KAHLEDKYRYLFKQVASSTSQCD-QRRLGLLLHDLIQIPRQLGEVAAFGGSN 551 (966)
T ss_pred HHHHhcccCCCcceEEeeehhhHHHHh-cchhHHHHHHHHHHHcCchhhHH-HHHHHHHHHHHHHHHHHHhHHHhhcCCC
Confidence 44555554 55556665665555 45667788899999866555443 444443332 2 21345
Q ss_pred CCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhcccCC
Q 030919 122 ISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILGNSGL 160 (169)
Q Consensus 122 ~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~~ 160 (169)
+.+. ++.||.. .++.-.|.+..|+.|+...+-
T Consensus 552 veps-----vrsCF~~--v~~~pei~~~~f~dw~~~epq 583 (966)
T KOG4286|consen 552 IEPS-----VRSCFQF--VNNKPEIEAALFLDWMRLEPQ 583 (966)
T ss_pred CChH-----HHHHHHh--cCCCCcchHHHHHHHhccCcc
Confidence 5554 6666873 466678999999999987665
No 173
>cd08031 LARP_4_5_like La RNA-binding domain of proteins similar to La-related proteins 4 and 5. This domain is found in proteins similar to La-related proteins 4 and 5 (LARP4, LARP5). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=43.48 E-value=41 Score=20.12 Aligned_cols=43 Identities=7% Similarity=0.150 Sum_probs=31.3
Q ss_pred HHHHHhcccCCHHHHHHHHHHHhhhcCCCCCCcCHHHhcChhHHH
Q 030919 15 EVQQHCNHAFSQQEIVSLYERFCQLDRNNGGFISAEEFLSVPEFA 59 (169)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~l~~~el~~~~~~~ 59 (169)
.+.+++..+|++..+..=.-+.+.+ +++|.|+.+-+..+..+.
T Consensus 3 ~i~~QvEfYFSd~NL~~D~fL~~~m--~~dG~Vpl~~i~~F~rmk 45 (75)
T cd08031 3 LLKRQLEYYFSRENLANDAYLLSQM--DSDQYVPIWTIANFNKIK 45 (75)
T ss_pred HHHHHHHHHcCHhhhccCHHHHHHh--CCCCCEEHHHHhCchhHH
Confidence 4666677789999987655455555 467999999988886554
No 174
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=42.85 E-value=41 Score=24.20 Aligned_cols=55 Identities=15% Similarity=0.205 Sum_probs=29.8
Q ss_pred HhCCCCCCcccHHH-HHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhcccCC
Q 030919 96 VYDSDGNGKVTFTD-MLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILGNSGL 160 (169)
Q Consensus 96 ~~D~~~~g~Is~~e-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~~ 160 (169)
+++.--++.||..+ |..++..+ + .+-+|+ +..+...+.++. .+.+|..|++.++.
T Consensus 35 l~~~vls~tiS~rd~~g~mf~~i-~--~s~~Ei---le~llk~i~Idp----~fKef~e~ike~di 90 (220)
T COG4359 35 LKDGVLSKTISFRDGFGRMFGSI-H--SSLEEI---LEFLLKDIKIDP----GFKEFVEWIKEHDI 90 (220)
T ss_pred HHHHHhhCceeHHHHHHHHHHhc-C--CCHHHH---HHHHHhhcccCc----cHHHHHHHHHHcCC
Confidence 33444566777653 45555443 3 333443 222344444443 57888888887765
No 175
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=42.68 E-value=33 Score=32.57 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=18.6
Q ss_pred HHhhhcCCCCCCcCHHHhcCh
Q 030919 35 RFCQLDRNNGGFISAEEFLSV 55 (169)
Q Consensus 35 ~F~~~D~~~~g~l~~~el~~~ 55 (169)
.|+.+|+++.|.|+..+|.++
T Consensus 4062 tfkeydpdgkgiiskkdf~ka 4082 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKA 4082 (5019)
T ss_pred cchhcCCCCCccccHHHHHHH
Confidence 356799999999999999988
No 176
>cd08034 LARP_1_2 La RNA-binding domain proteins similar to La-related proteins 1 and 2. This domain is found in proteins similar to vertebrate La-related proteins 1 and 2 (LARP1, LARP2). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=42.57 E-value=47 Score=19.78 Aligned_cols=43 Identities=9% Similarity=0.138 Sum_probs=30.6
Q ss_pred HHHHHhcccCCHHHHHHHHHHHhhhcCCCCCCcCHHHhcChhHHH
Q 030919 15 EVQQHCNHAFSQQEIVSLYERFCQLDRNNGGFISAEEFLSVPEFA 59 (169)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~l~~~el~~~~~~~ 59 (169)
.+.++...+|++..+..=.-+-+.+ +++|.++.+-+..++.+.
T Consensus 3 ~i~~QvEfYFSd~NL~~D~fLr~~m--~~~G~Vpl~~i~~F~rmk 45 (73)
T cd08034 3 YIKKQIEYYFSVDNLEKDFFLRRKM--DPEGYLPIALIASFHRVQ 45 (73)
T ss_pred HHHhhHHhhcCHhhhccCHHHHHHc--CCCCCEeHHHHhccHHHH
Confidence 4566677788988886544444455 568999999888886544
No 177
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=42.22 E-value=76 Score=19.83 Aligned_cols=59 Identities=8% Similarity=0.208 Sum_probs=38.7
Q ss_pred CCcccHHHHHHHHHHhhCCCCCHHHHHHHHH---HHHHhhCCCCCCcccHHHHHHHhcccCCceeeec
Q 030919 102 NGKVTFTDMLDVLRDLTGTFISEKQREQVLT---DVLDEAGYTKDSLMILSDFVKILGNSGLKMEVEV 166 (169)
Q Consensus 102 ~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~d~~~dg~i~~~eF~~~l~~~~~~~~~~~ 166 (169)
....+.+++..++..+ + .+.++ +++ ..+...+......++-+++++++.++|.++.=++
T Consensus 33 ~~~~~~~~l~~~~~~~-~--~~~~~---li~~~~~~~~~l~~~~~~~ls~~e~~~~l~~~p~LikRPi 94 (105)
T cd02977 33 KEPPTKEELKELLAKL-G--LGVED---LFNTRGTPYRKLGLADKDELSDEEALELMAEHPKLIKRPI 94 (105)
T ss_pred cCCCCHHHHHHHHHhc-C--CCHHH---HHhcCCchHHHcCCccccCCCHHHHHHHHHhCcCeeeCCE
Confidence 3567788898888765 4 22222 222 2345555443457899999999999999876543
No 178
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=42.16 E-value=59 Score=18.56 Aligned_cols=31 Identities=23% Similarity=0.244 Sum_probs=24.1
Q ss_pred CCHHhHHHHHHHhcccCCHHHHHHHHHHHhh
Q 030919 8 LTQYDIEEVQQHCNHAFSQQEIVSLYERFCQ 38 (169)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~ 38 (169)
++..++....+.+...+++.++.++.+.-+.
T Consensus 30 it~~DF~~Al~~~kpSVs~~dl~~ye~w~~~ 60 (62)
T PF09336_consen 30 ITMEDFEEALKKVKPSVSQEDLKKYEEWTKE 60 (62)
T ss_dssp BCHHHHHHHHHTCGGSS-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 6778889999998889999999888765443
No 179
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.83 E-value=68 Score=21.29 Aligned_cols=42 Identities=17% Similarity=0.302 Sum_probs=33.2
Q ss_pred CCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCC
Q 030919 101 GNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKDS 144 (169)
Q Consensus 101 ~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg 144 (169)
..|.||.+|-.++|.. .+.++.++++.-...+|+-=|....|
T Consensus 52 ~~~~iTlqEa~qILnV--~~~ln~eei~k~yehLFevNdkskGG 93 (132)
T KOG3442|consen 52 SNGKITLQEAQQILNV--KEPLNREEIEKRYEHLFEVNDKSKGG 93 (132)
T ss_pred ccccccHHHHhhHhCC--CCCCCHHHHHHHHHHHHhccCcccCc
Confidence 3477999999999964 45788999888878888877766556
No 180
>PF12207 DUF3600: Domain of unknown function (DUF3600); InterPro: IPR022019 This family of proteins is found in bacteria. Proteins in this family are approximately 230 amino acids in length. This domain is the C-terminal of the putative ecf-type sigma factor negative effector. ; PDB: 3FGG_A 3FH3_A.
Probab=40.70 E-value=1.2e+02 Score=20.88 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=22.3
Q ss_pred HHHHHhcccCCHHHHHHHHHHHhhhc------CCCCCCcCHHHhcCh
Q 030919 15 EVQQHCNHAFSQQEIVSLYERFCQLD------RNNGGFISAEEFLSV 55 (169)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~F~~~D------~~~~g~l~~~el~~~ 55 (169)
.-.+..+..++.++..++.+..+.+- .|.+|.+..+++...
T Consensus 31 aKLqqAK~~lgeeEfeef~~lLK~lt~~kLkygD~NGnidye~ls~~ 77 (162)
T PF12207_consen 31 AKLQQAKGELGEEEFEEFKELLKKLTNAKLKYGDKNGNIDYEKLSKE 77 (162)
T ss_dssp HHHHHHHHCS-HHHHHHHHHHHHHHHHHHHHHB-TTS-B-GGGS-HH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhHHhhcccCCCcCHHhCCHH
Confidence 33444556688888877777665531 366777766666654
No 181
>PLN02228 Phosphoinositide phospholipase C
Probab=40.34 E-value=1.6e+02 Score=25.12 Aligned_cols=60 Identities=18% Similarity=0.288 Sum_probs=34.4
Q ss_pred HHHHHHHHhcc---CCHHHHHHHHHhhCCC-CCHHHHHHHHHHHhCCC----CCCcccHHHHHHHHHH
Q 030919 57 EFARLLRMVDG---LNFKEFVAFLSAFSPH-ATLHQKIEFIFKVYDSD----GNGKVTFTDMLDVLRD 116 (169)
Q Consensus 57 ~~~~~~~~~~~---i~~~ef~~~~~~~~~~-~~~~~~~~~~F~~~D~~----~~g~Is~~e~~~~l~~ 116 (169)
++..+|..+.. ++.++|..++...... ....+.+..+|..|... ..|.++.+.|...|..
T Consensus 25 ei~~if~~~s~~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 25 SIKRLFEAYSRNGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred HHHHHHHHhcCCCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 44445544422 6666666666554321 23345566677766543 3467899998888853
No 182
>cd08035 LARP_4 La RNA-binding domain of La-related protein 4. This domain is found in vertebrate La-related protein 4 (LARP4), also known as c-MPL binding protein. La-type domains often co-occur with RNA-recognition motifs (RRMs). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=38.66 E-value=48 Score=19.88 Aligned_cols=43 Identities=9% Similarity=0.187 Sum_probs=31.1
Q ss_pred HHHHHhcccCCHHHHHHHHHHHhhhcCCCCCCcCHHHhcChhHHH
Q 030919 15 EVQQHCNHAFSQQEIVSLYERFCQLDRNNGGFISAEEFLSVPEFA 59 (169)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~l~~~el~~~~~~~ 59 (169)
.+.+++-.+||+..+..=.-+.+.+ +.+|.|+..-+..+..+.
T Consensus 3 ~i~~QvEyYFSd~NL~~D~fL~~~m--d~~G~Vpi~~iasF~rik 45 (75)
T cd08035 3 CLKKQLEFCFSRENLSKDLYLISQM--DSDQFVPIWTVANMEGIK 45 (75)
T ss_pred HHHhhHHhhcCHhhcccCHHHHHhh--CcCCCEehHHHhccHHHH
Confidence 4566677889999987655556666 468999998888775443
No 183
>TIGR00988 hip integration host factor, beta subunit. This protein forms a site-specific DNA-binding heterodimer with the homologous integration host factor alpha subunit. It is closely related to the DNA-binding protein HU.
Probab=38.52 E-value=43 Score=20.63 Aligned_cols=45 Identities=11% Similarity=0.305 Sum_probs=24.5
Q ss_pred cHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhh--CCCCCCcccHHHH
Q 030919 106 TFTDMLDVLRDLTGTFISEKQREQVLTDVLDEA--GYTKDSLMILSDF 151 (169)
Q Consensus 106 s~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--d~~~dg~i~~~eF 151 (169)
+..||...+..- ...++..+++.+++.++..+ ....++.|....|
T Consensus 2 ~k~eli~~i~~~-~~~~s~~~v~~vv~~~~~~i~~~L~~g~~V~l~gf 48 (94)
T TIGR00988 2 TKSELIERIATQ-QSHLPAKDVEDAVKTMLEHMASALAQGDRIEIRGF 48 (94)
T ss_pred CHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHcCCeEEEcCc
Confidence 566776666543 34567777766665555444 1233444544443
No 184
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=38.46 E-value=49 Score=19.92 Aligned_cols=30 Identities=17% Similarity=0.376 Sum_probs=18.3
Q ss_pred CCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHH
Q 030919 101 GNGKVTFTDMLDVLRDLTGTFISEKQREQVLTD 133 (169)
Q Consensus 101 ~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~ 133 (169)
..|+||.+++..+|.. ..++++.++.++..
T Consensus 18 ~~G~lT~~eI~~~L~~---~~~~~e~id~i~~~ 47 (82)
T PF03979_consen 18 KKGYLTYDEINDALPE---DDLDPEQIDEIYDT 47 (82)
T ss_dssp HHSS-BHHHHHHH-S----S---HHHHHHHHHH
T ss_pred hcCcCCHHHHHHHcCc---cCCCHHHHHHHHHH
Confidence 4689999999999953 34788887777433
No 185
>PF02864 STAT_bind: STAT protein, DNA binding domain; InterPro: IPR013801 The STAT protein (Signal Transducers and Activators of Transcription) family contains transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors, hence they act as signal transducers in the cytoplasm and transcription activators in the nucleus []. Binding of these factors to cell-surface receptors leads to receptor autophosphorylation at a tyrosine, the phosphotyrosine being recognised by the STAT SH2 domain, which mediates the recruitment of STAT proteins from the cytosol and their association with the activated receptor. The STAT proteins are then activated by phosphorylation via members of the JAK family of protein kinases, causing them to dimerise and translocated to the nucleus, where they bind to specific promoter sequences in target genes. In mammals, STATs comprise a family of seven structurally and functionally related proteins: Stat1, Stat2, Stat3, Stat4, Stat5a and Stat5b, Stat6. STAT proteins play a critical role in regulating innate and acquired host immune responses. Dysregulation of at least two STAT signalling cascades (i.e. Stat3 and Stat5) is associated with cellular transformation. Signalling through the JAK/STAT pathway is initiated when a cytokine binds to its corresponding receptor. This leads to conformational changes in the cytoplasmic portion of the receptor, initiating activation of receptor associated members of the JAK family of kinases. The JAKs, in turn, mediate phosphorylation at the specific receptor tyrosine residues, which then serve as docking sites for STATs and other signalling molecules. Once recruited to the receptor, STATs also become phosphorylated by JAKs, on a single tyrosine residue. Activated STATs dissociate from the receptor, dimerise, translocate to the nucleus and bind to members of the GAS (gamma activated site) family of enhancers. The seven STAT proteins identified in mammals range in size from 750 and 850 amino acids. The chromosomal distribution of these STATs, as well as the identification of STATs in more primitive eukaryotes, suggest that this family arose from a single primordial gene. STATs share structurally and functionally conserved domains including: an N-terminal domain that strengthens interactions between STAT dimers on adjacent DNA-binding sites; a coiled-coil STAT domain that is implicated in protein-protein interactions; a DNA-binding domain with an immunoglobulin-like fold similar to p53 tumour suppressor protein; an EF-hand-like linker domain connecting the DNA-binding and SH2 domains; an SH2 domain (IPR000980 from INTERPRO) that acts as a phosphorylation-dependent switch to control receptor recognition and DNA-binding; and a C-terminal transactivation domain []. The crystal structure of the N terminus of Stat4 reveals a dimer. The interface of this dimer is formed by a ring-shaped element consisting of five short helices. Several studies suggest that this N-terminal dimerisation promotes cooperativity of binding to tandem GAS elements and with the transcriptional coactivator CBP/p300. This entry represents the DNA-binding domain, which has an immunoglobulin-like structural fold.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0004871 signal transducer activity, 0006355 regulation of transcription, DNA-dependent, 0007165 signal transduction, 0005634 nucleus; PDB: 1YVL_A 1BF5_A 1Y1U_B 3CWG_B 1BG1_A.
Probab=37.41 E-value=82 Score=23.72 Aligned_cols=51 Identities=20% Similarity=0.321 Sum_probs=34.3
Q ss_pred CcccHHHHHHHHH----HhhCCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHH
Q 030919 103 GKVTFTDMLDVLR----DLTGTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVK 153 (169)
Q Consensus 103 g~Is~~e~~~~l~----~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~ 153 (169)
-.++..++..+|+ ...+..++++++..+..+++..-....++.|++..|+.
T Consensus 177 ~~v~W~ql~~~L~~~F~~~~~R~L~~~~L~~L~~Kl~~~~~~~~~~~isw~~F~K 231 (254)
T PF02864_consen 177 PKVPWPQLSEALSWQFSSETGRGLTDEQLQYLAEKLFGQNSSYNNMLISWSQFCK 231 (254)
T ss_dssp SEEEHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHTSSS-GCC-EEEHHHHHT
T ss_pred CcccHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCcccCCCceeEHHHhhh
Confidence 3577888888875 23378899999999888887766555678999999864
No 186
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=37.11 E-value=98 Score=20.96 Aligned_cols=36 Identities=3% Similarity=0.001 Sum_probs=22.6
Q ss_pred CCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCC
Q 030919 101 GNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGY 140 (169)
Q Consensus 101 ~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~ 140 (169)
..+.|+.+.|+.+|+.++...++.+- ++.+|..+-.
T Consensus 45 ~~~~Id~egF~~Fm~~yLe~d~P~~l----c~hLF~sF~~ 80 (138)
T PF14513_consen 45 PEEPIDYEGFKLFMKTYLEVDLPEDL----CQHLFLSFQK 80 (138)
T ss_dssp ETTEE-HHHHHHHHHHHTT-S--HHH----HHHHHHHS--
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCHHH----HHHHHHHHhC
Confidence 34589999999999988666665555 5555777743
No 187
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=37.06 E-value=44 Score=16.34 Aligned_cols=16 Identities=19% Similarity=0.453 Sum_probs=11.4
Q ss_pred CCcccHHHHHHHHHHh
Q 030919 102 NGKVTFTDMLDVLRDL 117 (169)
Q Consensus 102 ~g~Is~~e~~~~l~~~ 117 (169)
.|.|+++++..+..+.
T Consensus 2 ~~~i~~~~~~d~a~rv 17 (33)
T PF09373_consen 2 SGTISKEEYLDMASRV 17 (33)
T ss_pred CceecHHHHHHHHHHH
Confidence 5778888887777653
No 188
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=36.92 E-value=1.2e+02 Score=19.65 Aligned_cols=53 Identities=13% Similarity=0.248 Sum_probs=36.9
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHH
Q 030919 92 FIFKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKI 154 (169)
Q Consensus 92 ~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~ 154 (169)
.+|-+.-..|+..+|.+++..++... |..+.+..+.-+ ++.+. + .+.++.+..
T Consensus 5 aAylL~~l~g~~~pTa~dI~~IL~Aa-GveVe~~~~~lf----~~~L~--G---Kdi~eLIa~ 57 (109)
T cd05833 5 AAYLLAVLGGNASPSAADVKKILGSV-GVEVDDEKLNKV----ISELE--G---KDVEELIAA 57 (109)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHc-CCCccHHHHHHH----HHHHc--C---CCHHHHHHH
Confidence 34555556677799999999999998 888888876666 44442 1 355666554
No 189
>PF04783 DUF630: Protein of unknown function (DUF630); InterPro: IPR006868 This region is sometimes found at the N terminus of putative plant bZIP proteins IPR006867 from INTERPRO. The function of this conserved region is not known.
Probab=36.90 E-value=22 Score=20.35 Aligned_cols=19 Identities=21% Similarity=0.263 Sum_probs=13.4
Q ss_pred CCCccCCCCHHhHHHHHHH
Q 030919 1 MGNASSMLTQYDIEEVQQH 19 (169)
Q Consensus 1 mg~~~~~~~~~~~~~~~~~ 19 (169)
||+..|++..++.-.+.+.
T Consensus 1 MGC~~SK~d~eeaV~~Cke 19 (60)
T PF04783_consen 1 MGCSQSKLDDEEAVSLCKE 19 (60)
T ss_pred CCCCcccccCcHHHHHHHH
Confidence 9999999986654444433
No 190
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=35.17 E-value=45 Score=27.07 Aligned_cols=48 Identities=15% Similarity=0.220 Sum_probs=40.0
Q ss_pred CCHHhHHHHHHHhcccCCHHHHHHHHHHHhhhcCCCCCCcCHHHhcCh
Q 030919 8 LTQYDIEEVQQHCNHAFSQQEIVSLYERFCQLDRNNGGFISAEEFLSV 55 (169)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~l~~~el~~~ 55 (169)
++.....+|..+.-.+||++.+..=..+.+.+-+|+.|+|+..-+..+
T Consensus 136 lsedl~~kIv~QVEyyFSDenL~~d~fLlkhvrrnkeGyVpv~~vaSF 183 (484)
T KOG1855|consen 136 LSEDLAAKIVDQVEYYFSDENLLKDAFLLKHVRRNKEGYVPVKLVASF 183 (484)
T ss_pred ccHHHHHHHHHHhheeeccccccchHHHHHHHhcCCCCceeeehhhhH
Confidence 455556689999999999999988888888899999999988776666
No 191
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=34.19 E-value=2e+02 Score=21.72 Aligned_cols=54 Identities=9% Similarity=0.028 Sum_probs=35.0
Q ss_pred CCccCCCCHHhHHHHHHHhcccCCHHHHHHHHHHHhhhcCCCCCCcCHHHhcCh
Q 030919 2 GNASSMLTQYDIEEVQQHCNHAFSQQEIVSLYERFCQLDRNNGGFISAEEFLSV 55 (169)
Q Consensus 2 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~l~~~el~~~ 55 (169)
|+++++-....-+-..+.+-...++.+++..++.+..-+.+..-.++.++.-.+
T Consensus 41 G~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L 94 (261)
T KOG3010|consen 41 GTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDL 94 (261)
T ss_pred ccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccCCccccccccccc
Confidence 566665444444445555557889999998888887766665556665555544
No 192
>PRK10026 arsenate reductase; Provisional
Probab=33.49 E-value=1.4e+02 Score=20.27 Aligned_cols=59 Identities=14% Similarity=0.235 Sum_probs=37.7
Q ss_pred CcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhcccCCceeee
Q 030919 103 GKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILGNSGLKMEVE 165 (169)
Q Consensus 103 g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~~~~~~~ 165 (169)
..+|.+|+..++..+ + .+..++-.--...++.+..+.+ .++-++.+.++.++|.++.=+
T Consensus 37 ~ppt~~eL~~~l~~~-g--~~~~~lint~~~~yr~L~~~~~-~ls~~e~l~ll~~~P~LIKRP 95 (141)
T PRK10026 37 TPPTRDELVKLIADM-G--ISVRALLRKNVEPYEELGLAED-KFTDDQLIDFMLQHPILINRP 95 (141)
T ss_pred CCcCHHHHHHHHHhC-C--CCHHHHHHcCCchHHHcCCCcc-CCCHHHHHHHHHhCccceeCc
Confidence 468999999999876 5 2222221101123566555443 478899999999999876533
No 193
>cd07978 TAF13 The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Several hy
Probab=32.78 E-value=1.3e+02 Score=18.79 Aligned_cols=21 Identities=14% Similarity=0.241 Sum_probs=17.1
Q ss_pred CCCCcccHHHHHHHhcccCCc
Q 030919 141 TKDSLMILSDFVKILGNSGLK 161 (169)
Q Consensus 141 ~~dg~i~~~eF~~~l~~~~~~ 161 (169)
-+.++++.++|+=.+++.+.+
T Consensus 50 ~r~~k~~~eD~~FliR~D~~K 70 (92)
T cd07978 50 RRRGKVKVEDLIFLLRKDPKK 70 (92)
T ss_pred cCCCCCCHHHHHHHHhcCHHH
Confidence 467789999999998887763
No 194
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=32.36 E-value=1.6e+02 Score=24.54 Aligned_cols=69 Identities=13% Similarity=0.227 Sum_probs=50.1
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCC----C-CCCcccHHHHHHHhcccCC
Q 030919 90 IEFIFKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGY----T-KDSLMILSDFVKILGNSGL 160 (169)
Q Consensus 90 ~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~----~-~dg~i~~~eF~~~l~~~~~ 160 (169)
-..+|..|-....+.|+..-|..+|+.. |..-++-.+++++.++ +..|. + ..+.++.+-|..++.....
T Consensus 88 eDLLFyLiaegq~ekipihKFiTALkst-GLrtsDPRLk~mMd~m-Kd~dq~~~e~S~gw~LdKDlFKkcI~sSI~ 161 (622)
T KOG0506|consen 88 EDLLFYLIAEGQSEKIPIHKFITALKST-GLRTSDPRLKDMMDEM-KDVDQEENESSSGWLLDKDLFKKCIFSSIV 161 (622)
T ss_pred hhhhhHHhhcCCcCcccHHHHHHHHHHc-CCCcCCchHHHHHHHH-HHHHhhhcccccceeecHHHHHHhhccchh
Confidence 3466777755556999999999999998 8887777777775553 43442 2 3347899999988776654
No 195
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=31.99 E-value=1.1e+02 Score=17.88 Aligned_cols=21 Identities=19% Similarity=0.276 Sum_probs=9.0
Q ss_pred HHHHHHHHhhCCCCCHHHHHHH
Q 030919 109 DMLDVLRDLTGTFISEKQREQV 130 (169)
Q Consensus 109 e~~~~l~~~~~~~~~~~~~~~~ 130 (169)
++..++... +..+++.++..+
T Consensus 18 ~m~~if~l~-~~~vs~~el~a~ 38 (68)
T PF07308_consen 18 DMIEIFALA-GFEVSKAELSAW 38 (68)
T ss_pred HHHHHHHHc-CCccCHHHHHHH
Confidence 344444433 444444444333
No 196
>PF13608 Potyvirid-P3: Protein P3 of Potyviral polyprotein
Probab=31.80 E-value=74 Score=26.06 Aligned_cols=38 Identities=24% Similarity=0.412 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHHhhhcCCCCCCcCHHHhcCh-----hHHHHHHH
Q 030919 25 SQQEIVSLYERFCQLDRNNGGFISAEEFLSV-----PEFARLLR 63 (169)
Q Consensus 25 ~~~~~~~~~~~F~~~D~~~~g~l~~~el~~~-----~~~~~~~~ 63 (169)
.+++...+..+| .+....++..|.+||... |++...+.
T Consensus 284 ~~~~~~~i~~ly-~~~~~~~~~pt~eEF~e~v~~~~p~L~~~~~ 326 (445)
T PF13608_consen 284 EEKEEDEIEHLY-MLCKKHGKLPTEEEFLEYVEEVNPELLEFAE 326 (445)
T ss_pred HHHHHHHHHHHH-HHHHHhCCCCCHHHHHHHHHhcCchHHHHHH
Confidence 344455566666 665666788999999987 66554444
No 197
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=31.35 E-value=13 Score=22.48 Aligned_cols=65 Identities=18% Similarity=0.295 Sum_probs=41.0
Q ss_pred HHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCC-cccH-HHHHHHhcccCCceeeec
Q 030919 94 FKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKDS-LMIL-SDFVKILGNSGLKMEVEV 166 (169)
Q Consensus 94 F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg-~i~~-~eF~~~l~~~~~~~~~~~ 166 (169)
|+.|.-+.+-..++++|...+..+ +.++. +.-++.-.|.+||= .|+- ++|..++..++-.+.+.|
T Consensus 11 fRRFsl~r~~~~~f~ef~~ll~~l--H~l~~------~~f~i~Y~D~~gDLLPInNDdNf~kAlssa~plLRl~i 77 (80)
T cd06403 11 FRRFSLDRNKPGKFEDFYKLLEHL--HHIPN------VDFLIGYTDPHGDLLPINNDDNFLKALSSANPLLRIFI 77 (80)
T ss_pred EEEEEeccccCcCHHHHHHHHHHH--hCCCC------CcEEEEEeCCCCCEecccCcHHHHHHHHcCCCceEEEE
Confidence 555666666788999999999887 22332 11124555665442 3443 368888888877766654
No 198
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=30.88 E-value=1.3e+02 Score=18.50 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=16.0
Q ss_pred cccHHHHHHHHHHhhCCCCCHHHHHHH
Q 030919 104 KVTFTDMLDVLRDLTGTFISEKQREQV 130 (169)
Q Consensus 104 ~Is~~e~~~~l~~~~~~~~~~~~~~~~ 130 (169)
.||.+||.+.-+.. +..+++++++.+
T Consensus 14 ~iT~~eLlkyskqy-~i~it~~QA~~I 39 (85)
T PF11116_consen 14 NITAKELLKYSKQY-NISITKKQAEQI 39 (85)
T ss_pred cCCHHHHHHHHHHh-CCCCCHHHHHHH
Confidence 46666666666665 666666665555
No 199
>cd08037 LARP_1 La RNA-binding domain of La-related protein 1. This domain is found in vertebrate La-related protein 1 (LARP1). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=30.48 E-value=82 Score=18.77 Aligned_cols=43 Identities=12% Similarity=0.177 Sum_probs=29.8
Q ss_pred HHHHHhcccCCHHHHHHHHHHHhhhcCCCCCCcCHHHhcChhHHH
Q 030919 15 EVQQHCNHAFSQQEIVSLYERFCQLDRNNGGFISAEEFLSVPEFA 59 (169)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~l~~~el~~~~~~~ 59 (169)
.+.++...+||+..+..=.-+-+.+ +++|.|+.+-+..+..+.
T Consensus 3 ~I~~QvEyYFSd~NL~~D~fLr~~m--d~dG~Vpi~~ia~F~rmk 45 (73)
T cd08037 3 YIKRQIEYYFSVDNLERDFFLRRKM--DEDGFLPVTLIASFHRVQ 45 (73)
T ss_pred HHHHHHHHhccHhhhccCHHHHHHh--ccCCCEeHHHHhcchHHH
Confidence 4566666788888886544444555 468999999888875443
No 200
>PF09873 DUF2100: Uncharacterized protein conserved in archaea (DUF2100); InterPro: IPR019210 This entry represents various hypothetical archaeal proteins, and has no known function.
Probab=30.02 E-value=1.7e+02 Score=21.34 Aligned_cols=39 Identities=10% Similarity=0.249 Sum_probs=25.8
Q ss_pred hCCCCCCcccHHHHHHHHHHhh-----------CCCCCHHHHHHHHHHHH
Q 030919 97 YDSDGNGKVTFTDMLDVLRDLT-----------GTFISEKQREQVLTDVL 135 (169)
Q Consensus 97 ~D~~~~g~Is~~e~~~~l~~~~-----------~~~~~~~~~~~~~~~~~ 135 (169)
|-.-..|.|+.++|+.++..+. .+.++.+++.++|+.+|
T Consensus 34 ~kdak~G~Id~~e~kkav~~liEAde~lYksaP~H~L~~E~AkeFck~l~ 83 (215)
T PF09873_consen 34 YKDAKPGKIDVEEFKKAVYSLIEADEYLYKSAPSHELNGEEAKEFCKLLF 83 (215)
T ss_pred ccCCCCCcccHHHHHHHHHHHHHHHHHHHhcCCcccccHhHHHHHHHHHH
Confidence 4444678899999988876432 24577777777665543
No 201
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=29.72 E-value=34 Score=22.54 Aligned_cols=15 Identities=13% Similarity=0.324 Sum_probs=6.6
Q ss_pred CCCcccHHHHHHHHH
Q 030919 101 GNGKVTFTDMLDVLR 115 (169)
Q Consensus 101 ~~g~Is~~e~~~~l~ 115 (169)
-||.|+.+|...+..
T Consensus 36 aDG~v~~~E~~~i~~ 50 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQ 50 (140)
T ss_dssp TTSS--CHHHHHHHH
T ss_pred cCCCCCHHHHHHHHH
Confidence 345566555554443
No 202
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.58 E-value=37 Score=30.21 Aligned_cols=63 Identities=17% Similarity=0.249 Sum_probs=49.2
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhcc
Q 030919 88 QKIEFIFKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILGN 157 (169)
Q Consensus 88 ~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~ 157 (169)
......|+..|..+.|.|+..+-..++.. ..+....+-+ ++...|..+.|.++..+|...++.
T Consensus 11 ~~~~~~~~~~d~~~~G~i~g~~a~~f~~~---s~L~~qvl~q----iws~~d~~~~g~l~~q~f~~~lrl 73 (847)
T KOG0998|consen 11 PLFDQYFKSADPQGDGRITGAEAVAFLSK---SGLPDQVLGQ----IWSLADSSGKGFLNRQGFYAALRL 73 (847)
T ss_pred chHHHhhhccCcccCCcccHHHhhhhhhc---cccchhhhhc----cccccccccCCccccccccccchH
Confidence 44567899999999999999999988864 3466655433 488889999999999998766554
No 203
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=28.59 E-value=1.5e+02 Score=18.28 Aligned_cols=49 Identities=16% Similarity=0.091 Sum_probs=31.2
Q ss_pred CCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhcccC
Q 030919 101 GNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILGNSG 159 (169)
Q Consensus 101 ~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~ 159 (169)
+.|.+|.++...+-. .....+....+ +..+ -..|.-.|..|+.+|...+
T Consensus 31 ~~gvlt~~~~~~I~~----~~t~~~k~~~L----ld~L--~~RG~~AF~~F~~aL~~~~ 79 (90)
T cd08332 31 QKDILTDSMAESIMA----KPTSFSQNVAL----LNLL--PKRGPRAFSAFCEALRETS 79 (90)
T ss_pred HcCCCCHHHHHHHHc----CCCcHHHHHHH----HHHH--HHhChhHHHHHHHHHHhcC
Confidence 357888887766653 33445555555 4443 3455668999999997643
No 204
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=28.44 E-value=1.4e+02 Score=18.00 Aligned_cols=49 Identities=12% Similarity=0.092 Sum_probs=33.0
Q ss_pred CCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhcccC
Q 030919 101 GNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILGNSG 159 (169)
Q Consensus 101 ~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~ 159 (169)
+.|.||-++...+- ....+.+....+ +... ...|...+.-|+++|....
T Consensus 26 ~~~Vit~e~~~~I~----a~~T~~~kar~L----ld~l--~~kG~~A~~~F~~~L~e~~ 74 (82)
T cd08330 26 GKKVITQEQYSEVR----AEKTNQEKMRKL----FSFV--RSWGASCKDIFYQILREEE 74 (82)
T ss_pred HCCCCCHHHHHHHH----cCCCcHHHHHHH----HHHH--HccCHHHHHHHHHHHHHhC
Confidence 45788888777666 334556776666 4443 3467788999999997544
No 205
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=28.35 E-value=1.4e+02 Score=18.62 Aligned_cols=15 Identities=13% Similarity=0.302 Sum_probs=11.0
Q ss_pred CCcccHHHHHHHhcc
Q 030919 143 DSLMILSDFVKILGN 157 (169)
Q Consensus 143 dg~i~~~eF~~~l~~ 157 (169)
+|.|+-|||..-+..
T Consensus 37 ~~~i~~EeF~~~Lq~ 51 (92)
T smart00549 37 NGTITAEEFTSRLQE 51 (92)
T ss_pred hCCCCHHHHHHHHHH
Confidence 568999999766543
No 206
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=27.88 E-value=1.8e+02 Score=19.33 Aligned_cols=59 Identities=5% Similarity=0.035 Sum_probs=36.5
Q ss_pred CcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhcccCCceeee
Q 030919 103 GKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILGNSGLKMEVE 165 (169)
Q Consensus 103 g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~~~~~~~ 165 (169)
..++.+++..++..+ +.. .+.+-.--...++.++.+. ..++-++.+.++..+|.++.=+
T Consensus 35 ~~~s~~eL~~~l~~~-~~~--~~~lin~~~~~~k~L~~~~-~~ls~~e~i~ll~~~P~LikRP 93 (132)
T PRK13344 35 EPLTKEEILAILTKT-ENG--IESIVSSKNRYAKALDCDI-EELSVNEVIDLIQENPRILKSP 93 (132)
T ss_pred CCCCHHHHHHHHHHh-CCC--HHHhhccCcHHHHhCCcch-hcCCHHHHHHHHHhCccceeCc
Confidence 478899999999876 422 2211000012245554333 4678899999999999876544
No 207
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=27.39 E-value=32 Score=32.83 Aligned_cols=90 Identities=12% Similarity=0.142 Sum_probs=55.9
Q ss_pred CCHHHHHHHHHhhC--CCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhhCCCCC--HHHHHHHHHHHHHhhCCCCC
Q 030919 68 LNFKEFVAFLSAFS--PHATLHQKIEFIFKVYDSDGNGKVTFTDMLDVLRDLTGTFIS--EKQREQVLTDVLDEAGYTKD 143 (169)
Q Consensus 68 i~~~ef~~~~~~~~--~~~~~~~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~d~~~d 143 (169)
|-++.|-.+..... ..+..-+....++..||++..|.|....+..+++.+ .+++. ...-. +.+--.+-...+
T Consensus 1395 VImeNFs~~t~~~s~~Ls~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L-~ppL~~~k~~~~---kli~mdmp~~~g 1470 (1592)
T KOG2301|consen 1395 VILENFSYATEDSSEGLSEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSL-DPPLDLGKPNKR---KLISMDLPMVSG 1470 (1592)
T ss_pred HHHhhhhhhcccccccCCcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhc-CCccccCCCCCc---eeeeeecCcCCC
Confidence 34444444443322 134445677889999999999999999999999987 43322 11100 111223334577
Q ss_pred CcccHHHHHHHhcccCCc
Q 030919 144 SLMILSDFVKILGNSGLK 161 (169)
Q Consensus 144 g~i~~~eF~~~l~~~~~~ 161 (169)
|.|++.+-+-++.+..+.
T Consensus 1471 d~V~f~d~L~aL~~r~l~ 1488 (1592)
T KOG2301|consen 1471 DRVHCLDILFALTKRVLG 1488 (1592)
T ss_pred CeeehhhHHHHHHHHhhc
Confidence 788888887777766553
No 208
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=27.34 E-value=1e+02 Score=16.15 Aligned_cols=29 Identities=17% Similarity=0.407 Sum_probs=20.3
Q ss_pred HHHHHHHHhC-CCCC-CcccHHHHHHHHHHh
Q 030919 89 KIEFIFKVYD-SDGN-GKVTFTDMLDVLRDL 117 (169)
Q Consensus 89 ~~~~~F~~~D-~~~~-g~Is~~e~~~~l~~~ 117 (169)
.+..+|..|. ++|+ ..++..||+.++..-
T Consensus 7 ~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~E 37 (44)
T PF01023_consen 7 TIIDVFHKYAGKEGDKDTLSKKELKELLEKE 37 (44)
T ss_dssp HHHHHHHHHHTSSSSTTSEEHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCeEcHHHHHHHHHHH
Confidence 4556677774 3344 579999999999753
No 209
>cd08038 LARP_2 La RNA-binding domain of La-related protein 2. This domain is found in vertebrate La-related protein 2 (LARP2). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=27.26 E-value=1.1e+02 Score=18.24 Aligned_cols=43 Identities=9% Similarity=0.122 Sum_probs=29.6
Q ss_pred HHHHHhcccCCHHHHHHHHHHHhhhcCCCCCCcCHHHhcChhHHH
Q 030919 15 EVQQHCNHAFSQQEIVSLYERFCQLDRNNGGFISAEEFLSVPEFA 59 (169)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~l~~~el~~~~~~~ 59 (169)
.+.++...+|++..+..=.-+-+.+ +++|.|+.+-+..+..+.
T Consensus 3 ~I~~QvEfYFSd~NL~~D~fLr~~m--~~~G~Vpl~~ia~F~rmk 45 (73)
T cd08038 3 YIKRQIEYYFSTENLERDFFLRRKM--DLQGFLPISLIAGFYRVQ 45 (73)
T ss_pred HHHhhHHhhcchhhhccCHHHHHHh--CCCCCEeHHHHhcchHHH
Confidence 4566667788988886544344445 468999998888875443
No 210
>PF07553 Lipoprotein_Ltp: Host cell surface-exposed lipoprotein; InterPro: IPR011434 This domain is found as 1-3 copies in a small family of proteins of unknown function.
Probab=26.55 E-value=1.2e+02 Score=16.44 Aligned_cols=30 Identities=13% Similarity=0.165 Sum_probs=23.0
Q ss_pred CCcccHHHHHHHHHHhhCCCCCHHHHHHHH
Q 030919 102 NGKVTFTDMLDVLRDLTGTFISEKQREQVL 131 (169)
Q Consensus 102 ~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~ 131 (169)
.+.+|.+.+..-|..-.|...+++++...|
T Consensus 16 ~~~~Sk~~l~~QL~se~ge~Ft~e~A~YAv 45 (48)
T PF07553_consen 16 TMHMSKQGLYDQLTSEYGEGFTEEEAQYAV 45 (48)
T ss_pred hccCCHHHHHHHHHhhcccCCCHHHHHHHH
Confidence 356889999888876447889999877664
No 211
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=26.13 E-value=1.1e+02 Score=17.57 Aligned_cols=37 Identities=14% Similarity=0.108 Sum_probs=27.0
Q ss_pred CCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCC
Q 030919 101 GNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTK 142 (169)
Q Consensus 101 ~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 142 (169)
.++.++...+.+.+... +..++++.+.-. ++.++.++
T Consensus 10 ~~~P~g~~~l~~~L~~~-g~~~se~avRrr----Lr~me~~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLR-GEELSEEAVRRR----LRAMERDG 46 (66)
T ss_pred cCCCCCHHHHHHHHHhc-ChhhhHHHHHHH----HHHHHHCC
Confidence 45688999999999876 888888876555 56655444
No 212
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=25.64 E-value=1.4e+02 Score=16.98 Aligned_cols=31 Identities=10% Similarity=0.214 Sum_probs=21.6
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHhhCCC
Q 030919 90 IEFIFKVYDSDGNGKVTFTDMLDVLRDLTGTF 121 (169)
Q Consensus 90 ~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~ 121 (169)
+..+++.++.+...-++.+|...-.... |.+
T Consensus 6 ~~~v~~~l~t~~~~GLs~~ev~~r~~~~-G~N 36 (69)
T PF00690_consen 6 VEEVLKRLNTSSSQGLSSEEVEERRKKY-GPN 36 (69)
T ss_dssp HHHHHHHHTTBTSSBBTHHHHHHHHHHH-SSS
T ss_pred HHHHHHHHCcCCCCCCCHHHHHHHHHhc-ccc
Confidence 3456666776667777888888777776 654
No 213
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=25.41 E-value=1.2e+02 Score=23.98 Aligned_cols=59 Identities=17% Similarity=0.146 Sum_probs=39.0
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhc
Q 030919 92 FIFKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILG 156 (169)
Q Consensus 92 ~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~ 156 (169)
+....+|..+.|.++.-..+-+|..+ +..--.+....+ |.... +++|.+.+..|.+++.
T Consensus 114 flLaA~ds~~~g~~~vfavkialatl-c~gk~~dklryI----fs~is-ds~gim~~i~~~~fl~ 172 (434)
T KOG4301|consen 114 FLLAAEDSEGQGKQQVFAVKIALATL-CGGKIKDKLRYI----FSLIS-DSRGIMQEIQRDQFLH 172 (434)
T ss_pred HHHhhcCccCCCCceeecchhhhhhh-ccchHHHHHHHH----HHHHc-cchHHHHHHHHHHHHH
Confidence 34457899999999999988888776 333223443333 66664 6777766666655554
No 214
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=25.04 E-value=1.7e+02 Score=17.80 Aligned_cols=49 Identities=16% Similarity=0.180 Sum_probs=30.7
Q ss_pred CCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhcccC
Q 030919 101 GNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILGNSG 159 (169)
Q Consensus 101 ~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~ 159 (169)
.+|.+|.++...+-. .....+..+.+ +..+ -..|.=.|..|+.+|...+
T Consensus 27 ~~~Vlt~~~~e~I~~----~~tr~~q~~~L----Ld~L--~~RG~~AF~~F~~aL~~~~ 75 (84)
T cd08326 27 SRGVFTPDMIEEIQA----AGSRRDQARQL----LIDL--ETRGKQAFPAFLSALRETG 75 (84)
T ss_pred hcCCCCHHHHHHHHc----CCCHHHHHHHH----HHHH--HhcCHHHHHHHHHHHHhcC
Confidence 456788777776653 33445555555 3333 3345667999999997754
No 215
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=24.89 E-value=1.8e+02 Score=18.79 Aligned_cols=27 Identities=11% Similarity=0.154 Sum_probs=17.4
Q ss_pred cHHHHHHHHHHhhCCCCCHHHHHHHHHH
Q 030919 106 TFTDMLDVLRDLTGTFISEKQREQVLTD 133 (169)
Q Consensus 106 s~~e~~~~l~~~~~~~~~~~~~~~~~~~ 133 (169)
|.+|++.++... ...+++++++++++.
T Consensus 80 ~~dElrai~~~~-~~~~~~e~l~~ILd~ 106 (112)
T PRK14981 80 TRDELRAIFAKE-RYTLSPEELDEILDI 106 (112)
T ss_pred CHHHHHHHHHHh-ccCCCHHHHHHHHHH
Confidence 456777777665 566777776666443
No 216
>PRK09071 hypothetical protein; Validated
Probab=24.80 E-value=2.4e+02 Score=22.07 Aligned_cols=63 Identities=11% Similarity=0.096 Sum_probs=34.7
Q ss_pred CHHHHHHHHHhhC--CCCCHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Q 030919 69 NFKEFVAFLSAFS--PHATLHQKIEFIFKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDV 134 (169)
Q Consensus 69 ~~~ef~~~~~~~~--~~~~~~~~~~~~F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 134 (169)
++.+|+..+..-. .+.-..+..+.+|..+ =+|.++-.++..+|..+.-...+.+|+.-+++-+
T Consensus 3 ~~~~~ik~vg~gk~~~~~Lt~eEa~~~~~~i---l~g~~~~~q~aAfL~alr~kgeT~eEi~g~~~a~ 67 (323)
T PRK09071 3 PFAEYIRILGKGKRGRRSLTREEARQAMGMI---LDGEVEDDQLGAFLMLLRVKEETAEELAGFVEAI 67 (323)
T ss_pred cHHHHHHHHcCCCCCCCCCCHHHHHHHHHHH---HcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3445555544321 1233445566666655 3467777777777765533456777766554443
No 217
>PF12091 DUF3567: Protein of unknown function (DUF3567); InterPro: IPR021951 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved EIVDK sequence motif.
Probab=24.44 E-value=1.1e+02 Score=18.92 Aligned_cols=40 Identities=5% Similarity=0.086 Sum_probs=28.4
Q ss_pred HHHHHHhCCCCCCcc-----cHHHHHHHHHHhhCCCCCHHHHHHH
Q 030919 91 EFIFKVYDSDGNGKV-----TFTDMLDVLRDLTGTFISEKQREQV 130 (169)
Q Consensus 91 ~~~F~~~D~~~~g~I-----s~~e~~~~l~~~~~~~~~~~~~~~~ 130 (169)
+.-|++.|++..-.| -.+.|+.-+..+.....+.+++++.
T Consensus 26 ~gGyEIVDK~~~rEifi~G~~Ae~Fr~~V~~li~~~Pt~EevDdf 70 (85)
T PF12091_consen 26 RGGYEIVDKNARREIFIDGSWAEMFREDVQALIASEPTQEEVDDF 70 (85)
T ss_pred cCCcEEeecCCCceEEeCcHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 345777888766432 3456777777776778999998887
No 218
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=24.43 E-value=2e+02 Score=18.33 Aligned_cols=56 Identities=14% Similarity=0.249 Sum_probs=36.5
Q ss_pred CcccHHHHHHHHHHhhCCCCCHHHHHHHHHH---HHHhhCCCCCCcccHHHHHHHhcccCCceeee
Q 030919 103 GKVTFTDMLDVLRDLTGTFISEKQREQVLTD---VLDEAGYTKDSLMILSDFVKILGNSGLKMEVE 165 (169)
Q Consensus 103 g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~d~~~dg~i~~~eF~~~l~~~~~~~~~~ 165 (169)
-.+|.+|+..++..+ +.. .+ ++++. .++....+. ..++-++.+.++..+|.++.=+
T Consensus 34 ~~~t~~el~~~l~~~-~~~--~~---~lin~~~~~y~~l~~~~-~~ls~~e~i~ll~~~P~LikRP 92 (112)
T cd03034 34 TPPTAAELRELLAKL-GIS--PR---DLLRTKEAPYKELGLAD-PELSDEELIDAMAAHPILIERP 92 (112)
T ss_pred CCcCHHHHHHHHHHc-CCC--HH---HHHhcCCchHHHcCCCc-cCCCHHHHHHHHHhCcCcccCC
Confidence 468999999999876 522 22 22221 244444333 4678899999999999876543
No 219
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=23.70 E-value=1.5e+02 Score=16.76 Aligned_cols=27 Identities=7% Similarity=0.188 Sum_probs=20.8
Q ss_pred cccHHHHHHHHHHhhCCCCCHHHHHHHH
Q 030919 104 KVTFTDMLDVLRDLTGTFISEKQREQVL 131 (169)
Q Consensus 104 ~Is~~e~~~~l~~~~~~~~~~~~~~~~~ 131 (169)
.+|.+|+...+..+ +..++.++...+.
T Consensus 9 ~lTeEEl~~~i~~L-~~~~~~~dm~~IW 35 (61)
T TIGR01639 9 KLSKEELNELINSL-DEIPNRNDMLIIW 35 (61)
T ss_pred HccHHHHHHHHHhh-cCCCCHHHHHHHH
Confidence 57888888888887 7778887766663
No 220
>PF13075 DUF3939: Protein of unknown function (DUF3939)
Probab=23.63 E-value=49 Score=22.36 Aligned_cols=49 Identities=10% Similarity=0.053 Sum_probs=32.4
Q ss_pred CcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhcccCC
Q 030919 103 GKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILGNSGL 160 (169)
Q Consensus 103 g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~~ 160 (169)
-.||.+|++.++..+ ...++..- ....=.+.|..|+|+-....|-..+.
T Consensus 8 ~~vTldevr~Av~~f-~~~lp~gi--------~rt~lv~~d~~iD~~~L~~yL~g~p~ 56 (140)
T PF13075_consen 8 VDVTLDEVRRAVHQF-EEDLPKGI--------NRTILVNDDQSIDFERLAPYLGGIPD 56 (140)
T ss_pred ccccHHHHHHHHHHH-HHhCccCC--------ceEEEEcCCceecHHHHhhhcCCCCC
Confidence 358899999999876 44444332 11222466778899888877776654
No 221
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=23.54 E-value=74 Score=21.82 Aligned_cols=29 Identities=21% Similarity=0.489 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhhhcCCCCCCcCHHHhcCh
Q 030919 27 QEIVSLYERFCQLDRNNGGFISAEEFLSV 55 (169)
Q Consensus 27 ~~~~~~~~~F~~~D~~~~g~l~~~el~~~ 55 (169)
.++..+......+|..+.|++|.++|+.+
T Consensus 66 ~~Lq~L~~rL~~le~~rg~Y~TiSeLKT~ 94 (148)
T PF12486_consen 66 TQLQQLADRLNQLEEQRGKYMTISELKTA 94 (148)
T ss_pred HHHHHHHHHHHHHHHhcCCceeHHHHHHH
Confidence 45677777777888888889999999865
No 222
>PF09435 DUF2015: Fungal protein of unknown function (DUF2015); InterPro: IPR018559 This entry represents uncharacterised proteins found in fungi.
Probab=23.52 E-value=1.8e+02 Score=19.42 Aligned_cols=37 Identities=14% Similarity=0.228 Sum_probs=29.2
Q ss_pred HHhHHHHHHHhcccCCHHHHHHHHHHHhhhcCCCCCC
Q 030919 10 QYDIEEVQQHCNHAFSQQEIVSLYERFCQLDRNNGGF 46 (169)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~ 46 (169)
+.++.++++...-.|-+..+...+..|..-..++||.
T Consensus 87 k~EI~~IM~~~~v~FDeARliy~~~~f~~NgI~pdG~ 123 (128)
T PF09435_consen 87 KREIRRIMKRRRVNFDEARLIYTERRFKKNGIGPDGR 123 (128)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCCCCC
Confidence 5688888888766667777777788898888888886
No 223
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=23.19 E-value=2.2e+02 Score=18.51 Aligned_cols=50 Identities=18% Similarity=0.285 Sum_probs=33.7
Q ss_pred HHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHH
Q 030919 94 FKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVK 153 (169)
Q Consensus 94 F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~ 153 (169)
|-+.-.-++..+|.+++..+|... +..+....+..+ ++.+. | .+.++.+.
T Consensus 7 yll~~l~g~~~pta~dI~~IL~Aa-Gvevd~~~~~~f----~~~L~----g-K~i~eLIa 56 (113)
T PLN00138 7 YLLAVLGGNTCPSAEDLKDILGSV-GADADDDRIELL----LSEVK----G-KDITELIA 56 (113)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHc-CCcccHHHHHHH----HHHHc----C-CCHHHHHH
Confidence 333334566689999999999998 888888776665 45442 1 35566653
No 224
>PLN02222 phosphoinositide phospholipase C 2
Probab=23.09 E-value=3.8e+02 Score=23.01 Aligned_cols=11 Identities=9% Similarity=0.422 Sum_probs=6.5
Q ss_pred CCcCHHHhcCh
Q 030919 45 GFISAEEFLSV 55 (169)
Q Consensus 45 g~l~~~el~~~ 55 (169)
+.++.++|..+
T Consensus 38 ~~mt~~~l~~F 48 (581)
T PLN02222 38 GVMTVDHLHRF 48 (581)
T ss_pred CCcCHHHHHHH
Confidence 46666666544
No 225
>PF11363 DUF3164: Protein of unknown function (DUF3164); InterPro: IPR021505 This entry is represented by Bacteriophage B3, Orf6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=22.88 E-value=1.1e+02 Score=22.10 Aligned_cols=31 Identities=13% Similarity=0.288 Sum_probs=22.6
Q ss_pred CHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 030919 85 TLHQKIEFIFKVYDSDGNGKVTFTDMLDVLR 115 (169)
Q Consensus 85 ~~~~~~~~~F~~~D~~~~g~Is~~e~~~~l~ 115 (169)
...+-...+-..|.+|..|.|+...+..+.+
T Consensus 116 ~~~~l~~lV~~af~~dk~G~l~~~rIl~Lrr 146 (195)
T PF11363_consen 116 ADPELRALVNRAFQVDKEGNLNTSRILGLRR 146 (195)
T ss_pred CChHHHHHHHHHHhcCCCCCcCHHHHHHHHh
Confidence 3344455666788889999999998876654
No 226
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=22.81 E-value=38 Score=19.90 Aligned_cols=45 Identities=18% Similarity=0.349 Sum_probs=20.0
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHh---hCCCCCHHHHHHHHHHHHHhh
Q 030919 90 IEFIFKVYDSDGNGKVTFTDMLDVLRDL---TGTFISEKQREQVLTDVLDEA 138 (169)
Q Consensus 90 ~~~~F~~~D~~~~g~Is~~e~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~ 138 (169)
+..+....+....--+-..+++.++..+ .|...++ ++++.+|..+
T Consensus 25 l~~a~~~l~~~~~~dl~a~~L~~A~~~L~~ItG~~~~e----diLd~IFs~F 72 (73)
T PF12631_consen 25 LEDALEALENGLPLDLVAEDLREALESLGEITGEVVTE----DILDNIFSNF 72 (73)
T ss_dssp HHHHHHHHHTT--HHHHHHHHHHHHHHHHHHCTSS--H----HHHHHHHCTS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCChH----HHHHHHHHhh
Confidence 4444444443333335556666666543 2433333 3355557653
No 227
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=22.65 E-value=21 Score=17.28 Aligned_cols=17 Identities=12% Similarity=0.290 Sum_probs=12.5
Q ss_pred HHHhhCCCCCCcccHHH
Q 030919 134 VLDEAGYTKDSLMILSD 150 (169)
Q Consensus 134 ~~~~~d~~~dg~i~~~e 150 (169)
++..-|.|++-+|+.++
T Consensus 4 LL~qEDTDgn~qITIeD 20 (30)
T PF07492_consen 4 LLEQEDTDGNFQITIED 20 (30)
T ss_pred HhhccccCCCcEEEEec
Confidence 46777888888887653
No 228
>PF02269 TFIID-18kDa: Transcription initiation factor IID, 18kD subunit; InterPro: IPR003195 This family includes the Spt3 yeast transcription factors and the 18 kDa subunit from human transcription initiation factor IID (TFIID-18). Determination of the crystal structure reveals an atypical histone fold [].; GO: 0006366 transcription from RNA polymerase II promoter; PDB: 1BH9_A 1BH8_A.
Probab=22.52 E-value=1.9e+02 Score=17.99 Aligned_cols=35 Identities=11% Similarity=0.188 Sum_probs=4.0
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHhcccCCce
Q 030919 128 EQVLTDVLDEAGYTKDSLMILSDFVKILGNSGLKM 162 (169)
Q Consensus 128 ~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~~~~ 162 (169)
.+++..+.......|.++|+.++|+=.+++.+.++
T Consensus 37 ~~l~~~A~~~a~~rg~~~i~~eDl~F~lR~D~~Kl 71 (93)
T PF02269_consen 37 IELCQEAMEVAQRRGSKKIKVEDLLFLLRKDPKKL 71 (93)
T ss_dssp HHHHHHHHC--------------------------
T ss_pred HHHHHHHHHHHhccccCcCcHHHHHHHHhcCHHHH
Confidence 33444444555556678999999999998888743
No 229
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=22.43 E-value=1.7e+02 Score=22.00 Aligned_cols=39 Identities=23% Similarity=0.290 Sum_probs=29.9
Q ss_pred HHHHhcccCCHHHHHHHHHHHhhhcCCCCCCcCHHHhcCh
Q 030919 16 VQQHCNHAFSQQEIVSLYERFCQLDRNNGGFISAEEFLSV 55 (169)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~l~~~el~~~ 55 (169)
+.+.....+|.-+++++++++..++. .+|+++..++..-
T Consensus 169 ~Vq~Ai~tLSySEleAv~~IL~~L~~-~egrlse~eLAer 207 (251)
T TIGR02787 169 AVQMAINTLSYSELEAVEHIFEELDG-NEGLLVASKIADR 207 (251)
T ss_pred HHHHHHHhccHhHHHHHHHHHHHhcc-ccccccHHHHHHH
Confidence 33444456899999999999999843 2699999988864
No 230
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=22.34 E-value=2e+02 Score=17.69 Aligned_cols=22 Identities=14% Similarity=0.449 Sum_probs=13.8
Q ss_pred CHHHHHHHHHHHhCCCCCCccc
Q 030919 85 TLHQKIEFIFKVYDSDGNGKVT 106 (169)
Q Consensus 85 ~~~~~~~~~F~~~D~~~~g~Is 106 (169)
+....+..||+++..|++..++
T Consensus 56 SS~~EL~EA~rl~~~n~~~~l~ 77 (83)
T cd06404 56 SSQMELEEAFRLYELNKDSELN 77 (83)
T ss_pred cCHHHHHHHHHHHHhcCcccEE
Confidence 3345677777777776665543
No 231
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=22.09 E-value=2.2e+02 Score=18.11 Aligned_cols=59 Identities=7% Similarity=0.110 Sum_probs=36.3
Q ss_pred CcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhcccCCceeee
Q 030919 103 GKVTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILGNSGLKMEVE 165 (169)
Q Consensus 103 g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~~~~~~~~~~ 165 (169)
..++.+++..++..+ +. +.+.+-.-=...++....+. ..++-++.++++.++|.++.=+
T Consensus 35 ~~~~~~el~~~~~~~-~~--~~~~l~n~~~~~~k~l~~~~-~~ls~~e~i~~l~~~p~LikRP 93 (115)
T cd03032 35 QPLTKEELKEILSLT-EN--GVEDIISTRSKAFKNLNIDI-DELSLSELIRLISEHPSLLRRP 93 (115)
T ss_pred CcchHHHHHHHHHHh-cC--CHHHHHhcCcHHHHHcCCCc-ccCCHHHHHHHHHhChhheeCC
Confidence 467888999888875 42 22221110012355554443 4578899999999999876544
No 232
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=21.91 E-value=1.9e+02 Score=20.44 Aligned_cols=32 Identities=19% Similarity=0.313 Sum_probs=25.3
Q ss_pred CCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHH
Q 030919 98 DSDGNGKVTFTDMLDVLRDLTGTFISEKQREQV 130 (169)
Q Consensus 98 D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~ 130 (169)
.-+.+|.+..+++...+..- +..++.+++.++
T Consensus 27 ~ld~~G~v~v~~Ll~~~~~~-~~~~t~~~l~~v 58 (179)
T PRK00819 27 TLDEEGWVDIDALIEALAKA-YKWVTRELLEAV 58 (179)
T ss_pred ccCCCCCEEHHHHHHHHHHc-cCCCCHHHHHHH
Confidence 35788999999999988754 556888887776
No 233
>TIGR01446 DnaD_dom DnaD and phage-associated domain. This model represents the conserved domain of DnaD, part of Bacillus subtilis replication restart primosome, and of a number of phage-associated proteins. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria.
Probab=21.04 E-value=1.8e+02 Score=16.65 Aligned_cols=42 Identities=12% Similarity=0.091 Sum_probs=22.3
Q ss_pred HHHhCCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q 030919 94 FKVYDSDGNGKVTFTDMLDVLRDLTGTFISEKQREQVLTDVL 135 (169)
Q Consensus 94 F~~~D~~~~g~Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~ 135 (169)
|+.+..+..+.+|..++..+..-+.....+++-+...++.++
T Consensus 2 ~~~~e~~~gr~ls~~e~~~i~~~~~~~~~~~evI~~ai~~a~ 43 (73)
T TIGR01446 2 YDFFEENFGRMLSPFEMEDLKYWLDEFGNSPELIKEALKEAV 43 (73)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 444545555567766666554433222356666666655543
No 234
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=20.91 E-value=2.4e+02 Score=18.02 Aligned_cols=56 Identities=11% Similarity=0.236 Sum_probs=36.0
Q ss_pred CcccHHHHHHHHHHhhCCCCCH-HHHHHHHH---HHHHhhCCCCCCcccHHHHHHHhcccCCceeee
Q 030919 103 GKVTFTDMLDVLRDLTGTFISE-KQREQVLT---DVLDEAGYTKDSLMILSDFVKILGNSGLKMEVE 165 (169)
Q Consensus 103 g~Is~~e~~~~l~~~~~~~~~~-~~~~~~~~---~~~~~~d~~~dg~i~~~eF~~~l~~~~~~~~~~ 165 (169)
..+|.+++..++..+ |. +. .+ +++ ..++..+.+. ..++-++.+.++.++|.++.=+
T Consensus 34 ~p~t~~el~~~l~~~-g~--~~~~~---lin~~~~~~~~l~~~~-~~ls~~e~i~~l~~~P~LikRP 93 (114)
T TIGR00014 34 NPPTKSELEAIFAKL-GL--TVARE---MIRTKEALYKELGLSD-PNLSDQELLDAMVAHPILLERP 93 (114)
T ss_pred CCcCHHHHHHHHHHc-CC--chHHH---HHhcCCcHHHHcCCCc-cCCCHHHHHHHHHHCcCcccCC
Confidence 478999999999876 52 22 22 221 2244444333 3578889999999999876533
No 235
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=20.78 E-value=2e+02 Score=17.15 Aligned_cols=43 Identities=9% Similarity=0.232 Sum_probs=29.2
Q ss_pred cHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCC-CCCcccHHHHHHHh
Q 030919 106 TFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYT-KDSLMILSDFVKIL 155 (169)
Q Consensus 106 s~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~-~dg~i~~~eF~~~l 155 (169)
..+++...| .|.+.+.+.+... +...+.+ -=+.++-+++++++
T Consensus 43 ~i~~le~~L---~G~~~~~~~i~~~----l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 43 DIEELEEAL---IGCPYDREAIKEA----LNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp CHHHHHHHH---TTCBSSHHHHHHH----HHHCHGGGTCCTHHHHHHHHHH
T ss_pred HHHHHHHHH---HhcCCCHHHHHHH----HHHhCHhhccccCCHHHHHHhC
Confidence 356777766 4777888886666 6665443 23478889998875
No 236
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=20.38 E-value=2.5e+02 Score=17.98 Aligned_cols=42 Identities=12% Similarity=0.100 Sum_probs=30.5
Q ss_pred ccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhhCCCCCCcccHHHHHHHhc
Q 030919 105 VTFTDMLDVLRDLTGTFISEKQREQVLTDVLDEAGYTKDSLMILSDFVKILG 156 (169)
Q Consensus 105 Is~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~l~ 156 (169)
||.+++..+|... +..+++..+..+ ++.+. ..+.++.+....
T Consensus 17 ~ta~~I~~IL~aa-GveVe~~~~~~~----~~aLa-----Gk~V~eli~~g~ 58 (105)
T cd04411 17 LTEDKIKELLSAA-GAEIEPERVKLF----LSALN-----GKNIDEVISKGK 58 (105)
T ss_pred CCHHHHHHHHHHc-CCCcCHHHHHHH----HHHHc-----CCCHHHHHHHHH
Confidence 9999999999998 888988887666 44442 135666665443
Done!