BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030920
         (169 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
           Iii Effector Xcv3220 (Xopl)
          Length = 328

 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 67/163 (41%), Gaps = 20/163 (12%)

Query: 13  LKLKKFPDIVQVLG-------DRTDIRELSFAIELLFRLVLLTLNGCKN-LERLERTISV 64
           + L +FPD    L        D   + EL    +    L  LTL   +N L  L  +I+ 
Sbjct: 91  VPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTL--ARNPLRALPASIAS 148

Query: 65  LKYLSTLKLSGLLKFREFPEKTSSKD---------QLLEIHLEGTAIRGLPASIELLSGN 115
           L  L  L +    +  E PE  +S D          L  + LE T IR LPASI  L   
Sbjct: 149 LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNL 208

Query: 116 VLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGCSKLKNVPETLG 158
             L +++   L +L    + L  L  L L GC+ L+N P   G
Sbjct: 209 KSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFG 250



 Score = 32.7 bits (73), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 3/83 (3%)

Query: 81  EFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDCKN-LKSLPSTTNGLRSL 139
           +FP++      L    ++   +  LP + +  +G   L L   +N L++LP++   L  L
Sbjct: 95  QFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTL--ARNPLRALPASIASLNRL 152

Query: 140 RMLHLSGCSKLKNVPETLGKVES 162
           R L +  C +L  +PE L   ++
Sbjct: 153 RELSIRACPELTELPEPLASTDA 175


>pdb|3ANG|C Chain C, Crystal Structure Of Thermus Thermophilus Fadr In Complex
           With E. Coli-Derived Dodecyl-Coa
 pdb|3ANG|A Chain A, Crystal Structure Of Thermus Thermophilus Fadr In Complex
           With E. Coli-Derived Dodecyl-Coa
 pdb|3ANG|D Chain D, Crystal Structure Of Thermus Thermophilus Fadr In Complex
           With E. Coli-Derived Dodecyl-Coa
 pdb|3ANG|B Chain B, Crystal Structure Of Thermus Thermophilus Fadr In Complex
           With E. Coli-Derived Dodecyl-Coa
 pdb|3ANP|C Chain C, Crystal Structure Of Thermus Thermophilus Fadr, A Tetr
           Familly Transcriptional Repressor, In Complex With
           Lauroyl-Coa.
 pdb|3ANP|D Chain D, Crystal Structure Of Thermus Thermophilus Fadr, A Tetr
           Familly Transcriptional Repressor, In Complex With
           Lauroyl-Coa.
 pdb|3ANP|A Chain A, Crystal Structure Of Thermus Thermophilus Fadr, A Tetr
           Familly Transcriptional Repressor, In Complex With
           Lauroyl-Coa.
 pdb|3ANP|B Chain B, Crystal Structure Of Thermus Thermophilus Fadr, A Tetr
           Familly Transcriptional Repressor, In Complex With
           Lauroyl-Coa
          Length = 204

 Score = 27.3 bits (59), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 54  NLERLERTISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPA 107
           +LER  RT++ L +LS L+ +     R+  E+     +LL   LEG  +R  PA
Sbjct: 150 SLERXGRTLADLYFLSALRWAAYTPGRDLAEELEKNLRLL---LEGXLVREAPA 200


>pdb|3KGL|A Chain A, Crystal Structure Of Procruciferin, 11s Globulin From
           Brassica Napus
 pdb|3KGL|B Chain B, Crystal Structure Of Procruciferin, 11s Globulin From
           Brassica Napus
 pdb|3KGL|C Chain C, Crystal Structure Of Procruciferin, 11s Globulin From
           Brassica Napus
 pdb|3KGL|D Chain D, Crystal Structure Of Procruciferin, 11s Globulin From
           Brassica Napus
 pdb|3KGL|E Chain E, Crystal Structure Of Procruciferin, 11s Globulin From
           Brassica Napus
 pdb|3KGL|F Chain F, Crystal Structure Of Procruciferin, 11s Globulin From
           Brassica Napus
          Length = 466

 Score = 26.6 bits (57), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 16/66 (24%), Positives = 37/66 (56%), Gaps = 2/66 (3%)

Query: 62  ISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLK 121
           +S+ +  S +K +   +FR    KT++  Q+  +    + +RGLP  +E++S    ++L+
Sbjct: 378 LSIPQGFSVVKRATSEQFRWIEFKTNANAQINTLAGRTSVLRGLP--LEVISNGYQISLE 435

Query: 122 DCKNLK 127
           + + +K
Sbjct: 436 EARRVK 441


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.138    0.379 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,141,086
Number of Sequences: 62578
Number of extensions: 144774
Number of successful extensions: 289
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 268
Number of HSP's gapped (non-prelim): 28
length of query: 169
length of database: 14,973,337
effective HSP length: 92
effective length of query: 77
effective length of database: 9,216,161
effective search space: 709644397
effective search space used: 709644397
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)