BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030923
(169 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224104290|ref|XP_002313385.1| predicted protein [Populus trichocarpa]
gi|222849793|gb|EEE87340.1| predicted protein [Populus trichocarpa]
Length = 243
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/116 (59%), Positives = 79/116 (68%), Gaps = 9/116 (7%)
Query: 2 REERGVCRAFQRGECTRGDGCKFSHNEQRAANTGGGPQDRSSRWGHEKFEGFSWGKNDSS 61
RE RGVC AFQRGEC RG GC+FSH+EQRAANTG G QD+SSRWGHE F+G
Sbjct: 130 REARGVCHAFQRGECNRGAGCRFSHDEQRAANTGWGAQDKSSRWGHEMFDG------PKK 183
Query: 62 SRATGSGRVALEGNPNQSDRREEKRSIRHDHRE---KPREDHGRREDKRSRRHSDN 114
S S + E +P Q+DRREEKRS HD E KPRED+ RREDK+ RR D+
Sbjct: 184 SEERSSYNMPSESHPKQNDRREEKRSRWHDDNEIVQKPREDYNRREDKKLRRLEDD 239
>gi|356551855|ref|XP_003544288.1| PREDICTED: zinc finger CCCH domain-containing protein 42-like
[Glycine max]
Length = 354
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 105/202 (51%), Gaps = 56/202 (27%)
Query: 2 REERGVCRAFQRGECTRGDGCKFSHNEQRAANTGGGPQDRSSRWGHEKFEGFS----WGK 57
RE RGVCRAFQRGECTRG CKFSH+EQRAANTG G ++ +WGH+KF+G G
Sbjct: 130 REARGVCRAFQRGECTRGASCKFSHDEQRAANTGWGREEDKPKWGHDKFDGPKKERRSGN 189
Query: 58 N-----------DSSSRATGSGRVALEGNPNQSDR------------------------- 81
N DS SRA + L+ P +SDR
Sbjct: 190 NQSNHIAETRDRDSFSRARNND-AELDNQPKRSDRKEMTKREYRYKREEKGSRRDDYDGM 248
Query: 82 ---------REEKRSIRHDHRE-KPRE-DHGRREDKRSRRHSDNNEFEARSREDHYRRDE 130
REEKRSI+ D E +P+ D REDKRSRR DN++ ++SRE H ++
Sbjct: 249 KLEPKDHHLREEKRSIKPDDVEVEPKSRDSDIREDKRSRRR-DNDDIVSKSREPHGYSED 307
Query: 131 KRPKRH---ESESYLREDQDRR 149
++ ++H ES RED DR+
Sbjct: 308 RKSRKHSEGESAPKPREDYDRK 329
Score = 36.6 bits (83), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 4/72 (5%)
Query: 70 VALEGNPNQSDRREEKRSIRHDHRE---KPREDHGRREDKRSRRHSDNNEFEARSREDHY 126
V +E SD RE+KRS R D+ + K RE HG ED++SR+HS+ E + RED+
Sbjct: 269 VEVEPKSRDSDIREDKRSRRRDNDDIVSKSREPHGYSEDRKSRKHSE-GESAPKPREDYD 327
Query: 127 RRDEKRPKRHES 138
R+ +KR R+ S
Sbjct: 328 RKQDKRSYRNYS 339
>gi|357490653|ref|XP_003615614.1| RNA binding domain protein [Medicago truncatula]
gi|355516949|gb|AES98572.1| RNA binding domain protein [Medicago truncatula]
Length = 393
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 73/148 (49%), Positives = 92/148 (62%), Gaps = 20/148 (13%)
Query: 2 REERGVCRAFQRGECTRGDGCKFSHNEQRAANTGGGPQDRSSRWGHEKFEGFS----WGK 57
RE RGVCRAFQRGECTRG GCKFSH+EQRAANTG G + ++ ++K++G +G
Sbjct: 130 REARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWG-DNGIAKGDNDKYDGPKKERRYGN 188
Query: 58 N-----------DSSSRATGSGRVALEGNPNQSDRREEKRSIRH--DHREKPREDHGRRE 104
N DS SRA G+G + L+ +SDRREEK R D RE+ RRE
Sbjct: 189 NQPDRIPETRDRDSRSRAHGNG-MELDNPSKRSDRREEKMLRRQDGDGNFVGRENTSRRE 247
Query: 105 DKRSRRHSDNNEFEARSREDHYRRDEKR 132
+KR R + D +EFE RED +RR+EKR
Sbjct: 248 EKRPRDYKD-DEFEQWPREDRHRREEKR 274
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 48/86 (55%), Gaps = 7/86 (8%)
Query: 70 VALEGNPNQSDRREEKRSIRHDHRE---KPREDHGRREDKRSRRHSDNNEFEARSREDHY 126
V E SD RE+KR R D + K RE G RE++RSR+H+D +E RSREDH
Sbjct: 302 VKFEPKSRDSDLREDKRPSRRDVDDFGSKSRETQGSREERRSRKHTD-DESMPRSREDHD 360
Query: 127 RRDEKRPKRHE---SESYLREDQDRR 149
R+ + R + SES R D DRR
Sbjct: 361 RKQDNRSYHKDADRSESKGRNDSDRR 386
>gi|449460375|ref|XP_004147921.1| PREDICTED: zinc finger CCCH domain-containing protein 25-like
[Cucumis sativus]
Length = 395
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 95/173 (54%), Gaps = 38/173 (21%)
Query: 5 RGVCRAFQRGECTRGDGCKFSHNEQRAANTG-GGPQDRSSRWGHEKFEGFSWGKNDSSSR 63
RGVCRAFQRGECTRG GCKFSH+EQRAA+TG G +D SS+WGH+KF+ S +D
Sbjct: 133 RGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGAAEDASSKWGHDKFD--SRKNHDKELH 190
Query: 64 ATG--------------SGRVALEGNPNQSDRREEKRSIRHDHREKPREDHGRREDKRSR 109
A G SG + E P D +E K REDHG +++KRSR
Sbjct: 191 AKGRKTSDNLGRHPRETSGSLRQENRPRGWDDSKESEL-------KSREDHGGKDEKRSR 243
Query: 110 RHSDNNEFEARSREDHY--------------RRDEKRPKRHESESYLREDQDR 148
R+ + + +S +D Y R+DEKR ++H+++ ++ + DR
Sbjct: 244 RYDLDGNSDPKSGDDQYKGEEKRSSRNHDDNRKDEKRSRKHDNDDEMKLEDDR 296
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 53/93 (56%), Gaps = 5/93 (5%)
Query: 81 RREEKRSIRHDHREKP----REDHGRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRH 136
R+EE R R+ E P R+ R ED+ S+RH D E+ + RED RR+ RH
Sbjct: 298 RKEENRYRRNQDNELPQHSRRDYKTREEDRSSKRHGDK-EYPPKLREDDKRRERDVSVRH 356
Query: 137 ESESYLREDQDRRGGDKSSTGRGDSSSHRHRER 169
SESY RE+ D + +SS G DSSSH HRER
Sbjct: 357 RSESYRRENPDEKRDYRSSHGGRDSSSHSHRER 389
>gi|297745915|emb|CBI15971.3| unnamed protein product [Vitis vinifera]
Length = 375
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 94/163 (57%), Gaps = 19/163 (11%)
Query: 2 REERGVCRAFQRGECTRGDGCKFSHNEQRAANTGGGPQDRSSRWGHEKFEGFSWGKNDSS 61
RE RGVCRAFQRGEC RG GCKFSH+EQRA+NTG G +D+SSRWGH+KF+G + K+D
Sbjct: 130 REARGVCRAFQRGECNRGAGCKFSHDEQRASNTGWGSEDKSSRWGHDKFQGST--KSDGR 187
Query: 62 SRATGSGRVALEGNPNQSDR--REEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFEA 119
+ + RV E + R ++ RS R E RE H RR E
Sbjct: 188 PNSIPTNRVH-EPTVGEGHRFGNKDARSSRTKGSEGGRESHHRRS-------------EL 233
Query: 120 RSREDHYRRDEKRPKRHESESYLREDQDRRGGDKSSTGRGDSS 162
R+ R E++ ++ E E +EDQDRR ++ S GR DS+
Sbjct: 234 DIRDQDGRGLERQMEQKEKELNYKEDQDRRTTERRS-GRPDSN 275
>gi|225434618|ref|XP_002279321.1| PREDICTED: uncharacterized protein LOC100246760 [Vitis vinifera]
Length = 429
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 54/69 (78%), Gaps = 2/69 (2%)
Query: 2 REERGVCRAFQRGECTRGDGCKFSHNEQRAANTGGGPQDRSSRWGHEKFEGFSWGKNDSS 61
RE RGVCRAFQRGEC RG GCKFSH+EQRA+NTG G +D+SSRWGH+KF+G + K+D
Sbjct: 130 REARGVCRAFQRGECNRGAGCKFSHDEQRASNTGWGSEDKSSRWGHDKFQGST--KSDGR 187
Query: 62 SRATGSGRV 70
+ + RV
Sbjct: 188 PNSIPTNRV 196
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/106 (51%), Positives = 67/106 (63%), Gaps = 12/106 (11%)
Query: 72 LEGNPNQSDRREEKRSIRH--------DHREKPREDHGRREDKRSRRHSDNNEFEARSRE 123
E NP + DR+EE R R + PREDH RRE+KRSRRH E E++ +E
Sbjct: 328 FESNPREDDRKEEDRDRRATERRSRRSEFESNPREDHDRREEKRSRRH----ELESKPKE 383
Query: 124 DHYRRDEKRPKRHESESYLREDQDRRGGDKSSTGRGDSSSHRHRER 169
DH RR+EK+ +RHESESYLRED GDK S D++SHRHRER
Sbjct: 384 DHDRREEKQSRRHESESYLREDPRDERGDKRSGHSRDTASHRHRER 429
>gi|297819328|ref|XP_002877547.1| hypothetical protein ARALYDRAFT_905943 [Arabidopsis lyrata subsp.
lyrata]
gi|297323385|gb|EFH53806.1| hypothetical protein ARALYDRAFT_905943 [Arabidopsis lyrata subsp.
lyrata]
Length = 316
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/135 (47%), Positives = 77/135 (57%), Gaps = 22/135 (16%)
Query: 2 REERGVCRAFQRGECTRGDGCKFSHNEQRAANTGGG-PQDRSSRWGHEKFEG-------- 52
RE RGVCRAFQRGECTRGD CKFSH+E+RAANTG G +DRSSRW H+KF G
Sbjct: 130 REARGVCRAFQRGECTRGDSCKFSHDEKRAANTGWGHEEDRSSRWDHDKFNGAKKGGTSF 189
Query: 53 -----FSWGKNDSSSRATGSGRVALEGNPNQSDRRE-EKRSIR----HDHREKPREDHGR 102
F + S R G G A G P + +R E E R +D RE+ R G
Sbjct: 190 GHRGDFKSDAEEKSYRGKGDGD-AWYGRPKERERVEREDMGPRSRDAYDMREQKRS--GP 246
Query: 103 REDKRSRRHSDNNEF 117
+D RSR H+ N++
Sbjct: 247 YDDSRSRSHNAGNDY 261
>gi|356498939|ref|XP_003518303.1| PREDICTED: zinc finger CCCH domain-containing protein 42-like
[Glycine max]
Length = 235
Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 53/100 (53%), Positives = 61/100 (61%), Gaps = 16/100 (16%)
Query: 2 REERGVCRAFQRGECTRGDGCKFSHNEQRAANTGGGPQDRSSRWGHEKFEGFS----WGK 57
RE RGVCRAFQRGECTRG CKFSH+EQRAANTG G ++ +WGH+KFEG G
Sbjct: 130 REARGVCRAFQRGECTRGASCKFSHDEQRAANTGWGREEDKPKWGHDKFEGPKKERRSGN 189
Query: 58 N-----------DSSSRATGSGRVALEGNPNQSDRREEKR 86
N DS +RA L+ P +SDRRE KR
Sbjct: 190 NQSNHIPETRDRDSRTRARNFD-AELDNQPKKSDRRETKR 228
>gi|147840589|emb|CAN72715.1| hypothetical protein VITISV_032469 [Vitis vinifera]
Length = 737
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 96/181 (53%), Gaps = 38/181 (20%)
Query: 2 REERGVCRAFQRGECTRGDGCKFSHNEQ-------------------RAANTGGGPQDRS 42
RE RGVCRAFQRGEC RG GCKFSH+EQ RA+NTG G +D+S
Sbjct: 130 REARGVCRAFQRGECNRGAGCKFSHDEQDLTFSWLSKSWRLVLQGLERASNTGWGSEDKS 189
Query: 43 SRWGHEKFEGFSWGKNDSSSRATGSGRVALEGNPNQSDR--REEKRSIRHDHREKPREDH 100
SRWGH+KF+G + K+D + + RV E + R ++ RS R E RE H
Sbjct: 190 SRWGHDKFQGST--KSDGRPNSIPTNRVH-EPTVGEGHRFGNKDARSSRTKGSEGGRESH 246
Query: 101 GRREDKRSRRHSDNNEFEARSREDHYRRDEKRPKRHESESYLREDQDRRGGDKSSTGRGD 160
RR +E + R ++ R E++ ++ E E +EDQDRR ++ S GR D
Sbjct: 247 HRR-----------SELDIRDQDG--RGLERQMEQKEKELNYKEDQDRRTTERRS-GRPD 292
Query: 161 S 161
S
Sbjct: 293 S 293
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 42/67 (62%), Gaps = 3/67 (4%)
Query: 77 NQSDRREEKRSIRHDHREKPREDHGRREDK---RSRRHSDNNEFEARSREDHYRRDEKRP 133
+Q R E+RS RHD PRED + ED+ + R S +EFE+ REDH RR+EKR
Sbjct: 332 DQDIRATERRSRRHDFESNPREDDRKEEDRDRRATERRSRRSEFESNPREDHDRREEKRS 391
Query: 134 KRHESES 140
+RHE ES
Sbjct: 392 RRHELES 398
>gi|15232729|ref|NP_190296.1| RNA-binding motif protein, X-linked 2 [Arabidopsis thaliana]
gi|75337070|sp|Q9SD61.1|C3H42_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 42;
Short=AtC3H42
gi|6522593|emb|CAB61958.1| putative RNA binding protein [Arabidopsis thaliana]
gi|27311733|gb|AAO00832.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|34098859|gb|AAQ56812.1| At3g47120 [Arabidopsis thaliana]
gi|332644724|gb|AEE78245.1| RNA-binding motif protein, X-linked 2 [Arabidopsis thaliana]
Length = 352
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/49 (77%), Positives = 43/49 (87%), Gaps = 1/49 (2%)
Query: 2 REERGVCRAFQRGECTRGDGCKFSHNEQRAANTGGG-PQDRSSRWGHEK 49
RE RGVCRAFQRGECTRGD CKFSH+E+RAANTG G +DRSS+W H+K
Sbjct: 130 REARGVCRAFQRGECTRGDSCKFSHDEKRAANTGWGHEEDRSSKWDHDK 178
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 85/174 (48%), Gaps = 45/174 (25%)
Query: 2 REERGVCRAFQRGECTRGDGCKFSHNEQRAANTGGG-PQDRSSRWGHEKFEG-------- 52
RE RGVCRAFQRGECTRGD CKFSH+E+RAA TG G +DRSS+W +K G
Sbjct: 180 REGRGVCRAFQRGECTRGDSCKFSHDEKRAATTGWGHEEDRSSKWDQDKLNGAKKGGTSF 239
Query: 53 -----FSWGKNDSSSRATGSGRVALEGNPNQ----------------SDRREEKRSIRHD 91
F + S R G G + G P + D +E+KRS R+D
Sbjct: 240 GNRGDFKPDVEEKSYRGRGDGDASY-GRPKERERVDREDMGPRSRDAYDMKEQKRSGRYD 298
Query: 92 HR---------EKPREDHGRREDKRSRRHS----DNNEFEARSREDHYRRDEKR 132
+ + RED G R +R + D N+ E + R D RR+++R
Sbjct: 299 NAYSRRHNDEIDYVREDKGSRAQDWEKRKAESRRDRNDREEKDR-DSLRREDRR 351
>gi|297793411|ref|XP_002864590.1| hypothetical protein ARALYDRAFT_358097 [Arabidopsis lyrata subsp.
lyrata]
gi|297310425|gb|EFH40849.1| hypothetical protein ARALYDRAFT_358097 [Arabidopsis lyrata subsp.
lyrata]
Length = 173
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/42 (78%), Positives = 35/42 (83%)
Query: 2 REERGVCRAFQRGECTRGDGCKFSHNEQRAANTGGGPQDRSS 43
RE RGVCRAFQR ECTRGDGCKFSH+E R ANTG G +DR S
Sbjct: 130 REARGVCRAFQRKECTRGDGCKFSHDENRGANTGWGHEDRRS 171
>gi|326520181|dbj|BAK04015.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 404
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 39/51 (76%)
Query: 2 REERGVCRAFQRGECTRGDGCKFSHNEQRAANTGGGPQDRSSRWGHEKFEG 52
REERGVC AFQ+GEC RGD CK+SH+EQR ANTG G ++ +W H++ G
Sbjct: 130 REERGVCYAFQKGECNRGDACKYSHDEQRNANTGWGSKEDDPKWEHDRHRG 180
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/30 (73%), Positives = 26/30 (86%)
Query: 5 RGVCRAFQRGECTRGDGCKFSHNEQRAANT 34
RGVC AFQ+GEC+RG C+FSH+EQR ANT
Sbjct: 218 RGVCYAFQKGECSRGASCRFSHDEQRNANT 247
Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 58/122 (47%), Gaps = 19/122 (15%)
Query: 3 EERGVCRAFQRGECTRGDGCKFSHNEQRAAN---------TGGGPQDRSSRWGHEKFEGF 53
E RGVC AFQ+GEC+RGD C+FSH+EQ AA G + S R+ H++
Sbjct: 186 ESRGVCYAFQKGECSRGDSCRFSHDEQVAAQGRGVCYAFQKGECSRGASCRFSHDEQRN- 244
Query: 54 SWGKNDSSSRATGSGRVALEGNPNQSDR------REEKRSIRHDHREKPREDHGRREDKR 107
D SR + R + +P +S + +EE RS D R + R D R
Sbjct: 245 --ANTDRGSREDTNARRQYDHDPPKSHKNFPDRNKEEARSGDRDG-HSSRSELYRDRDSR 301
Query: 108 SR 109
SR
Sbjct: 302 SR 303
>gi|357123042|ref|XP_003563222.1| PREDICTED: zinc finger CCCH domain-containing protein 25-like
[Brachypodium distachyon]
Length = 385
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/49 (61%), Positives = 39/49 (79%), Gaps = 1/49 (2%)
Query: 2 REERGVCRAFQRGECTRGDGCKFSHNEQRAANTG-GGPQDRSSRWGHEK 49
REERGVC AFQ+GEC RGD C++SH+EQR ANTG G +D + +W H++
Sbjct: 130 REERGVCYAFQKGECNRGDACRYSHDEQRNANTGWGSKEDINPKWEHDR 178
Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 68/141 (48%), Gaps = 24/141 (17%)
Query: 3 EERGVCRAFQRGECTRGDGCKFSHNEQRAANTG-GGPQDRSSR----------WGHEKFE 51
+ RG+C AFQ+GEC RG C+FSH+E+R A+ G +DR++R H+KF
Sbjct: 217 QARGICYAFQKGECNRGASCRFSHDEERNADAGRSSKEDRNARRDQDRHLDPPKSHKKFP 276
Query: 52 GFSWGKNDSSSRATGSGRVALEGNPNQSDRREEKRSIRHDHREKPREDHGRREDKRS-RR 110
S++ + R E P + + + + D R HG R K S RR
Sbjct: 277 S-------SAADQSFPDRTEEESRPANREGQSSRSEVYRDR--DSRVKHGDRSTKDSDRR 327
Query: 111 HSDNNEFEARSREDHYRRDEK 131
H + E RSR + +R D++
Sbjct: 328 HEKSPE---RSRGERHRSDDR 345
>gi|223946841|gb|ACN27504.1| unknown [Zea mays]
gi|407232618|gb|AFT82651.1| C3H30 C3H type transcription factor, partial [Zea mays subsp. mays]
gi|414873727|tpg|DAA52284.1| TPA: RNA-binding motif protein, X-linked 2 [Zea mays]
Length = 298
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/49 (61%), Positives = 37/49 (75%), Gaps = 1/49 (2%)
Query: 2 REERGVCRAFQRGECTRGDGCKFSHNEQRAANTG-GGPQDRSSRWGHEK 49
RE RGVC AFQ+GEC RG C++SH+EQR ANTG G +D +RW H+K
Sbjct: 130 REARGVCYAFQKGECNRGASCRYSHDEQRNANTGWGSKEDSGARWEHDK 178
>gi|226496357|ref|NP_001149007.1| RNA-binding motif protein, X-linked 2 [Zea mays]
gi|195623912|gb|ACG33786.1| RNA-binding motif protein, X-linked 2 [Zea mays]
Length = 298
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/49 (61%), Positives = 37/49 (75%), Gaps = 1/49 (2%)
Query: 2 REERGVCRAFQRGECTRGDGCKFSHNEQRAANTG-GGPQDRSSRWGHEK 49
RE RGVC AFQ+GEC RG C++SH+EQR ANTG G +D +RW H+K
Sbjct: 130 REARGVCYAFQKGECNRGASCRYSHDEQRNANTGWGSKEDSGARWEHDK 178
>gi|168006572|ref|XP_001755983.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692913|gb|EDQ79268.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 234
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 36/50 (72%), Gaps = 3/50 (6%)
Query: 6 GVCRAFQRGECTRGDGCKFSHNEQRAANTG---GGPQDRSSRWGHEKFEG 52
GVC AFQRGEC RGD CKFSH+EQR +NTG GG + W H++F+G
Sbjct: 134 GVCYAFQRGECKRGDDCKFSHDEQRNSNTGWGEGGSRKDGGSWKHDQFDG 183
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/23 (82%), Positives = 21/23 (91%)
Query: 5 RGVCRAFQRGECTRGDGCKFSHN 27
RGVC AFQRGEC RGDGCKF+H+
Sbjct: 212 RGVCYAFQRGECNRGDGCKFAHD 234
>gi|356526389|ref|XP_003531800.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
1-like [Glycine max]
Length = 617
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/28 (85%), Positives = 25/28 (89%)
Query: 2 REERGVCRAFQRGECTRGDGCKFSHNEQ 29
RE RGVCRAFQRGECTRG CKFSH+EQ
Sbjct: 130 REARGVCRAFQRGECTRGASCKFSHDEQ 157
>gi|115456325|ref|NP_001051763.1| Os03g0826400 [Oryza sativa Japonica Group]
gi|122246709|sp|Q10B98.1|C3H25_ORYSJ RecName: Full=Zinc finger CCCH domain-containing protein 25;
Short=OsC3H25
gi|15042832|gb|AAK82455.1|AC091247_22 putative RNA binding protein [Oryza sativa Japonica Group]
gi|18855068|gb|AAL79760.1|AC096687_24 putative small nuclear ribonucleoprotein [Oryza sativa Japonica
Group]
gi|108711850|gb|ABF99645.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113550234|dbj|BAF13677.1| Os03g0826400 [Oryza sativa Japonica Group]
gi|125588469|gb|EAZ29133.1| hypothetical protein OsJ_13196 [Oryza sativa Japonica Group]
Length = 312
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 67/190 (35%), Positives = 91/190 (47%), Gaps = 33/190 (17%)
Query: 2 REERGVCRAFQRGECTRGDGCKFSHNEQRAANTGGGPQDRS-SRW----------GHEKF 50
RE RGVC AFQ+GEC RG C++SH+EQR ANTG G ++ S +RW H+KF
Sbjct: 130 REARGVCYAFQKGECNRGASCRYSHDEQRNANTGWGSKEESKARWEHDRHHEPPMSHKKF 189
Query: 51 EGFSWGKNDSSSRATGSGRVALEGNPNQSDRRE--EKRSIRHDHREKPREDHGR----RE 104
S G+ RA + G QS R E + R R H ++ +DH R R
Sbjct: 190 PS-SAGEQRFPDRAKEENKST--GREGQSSRSEAYKDRDSRLRHSDRGSKDHDRYRHDRS 246
Query: 105 DKRSR--RHSDNNEFEARSREDHYRRDEKRPKRHESESYLREDQDRRGGDKSSTG----R 158
+RSR R +N+ + RDEK + + DQ R D S+G R
Sbjct: 247 PERSRGDRQRNNDRYAQG-------RDEKSERYRSEVKHDEGDQKRSRRDTDSSGHYERR 299
Query: 159 GDSSSHRHRE 168
G+ S R+R+
Sbjct: 300 GNEDSERYRK 309
>gi|242037549|ref|XP_002466169.1| hypothetical protein SORBIDRAFT_01g002770 [Sorghum bicolor]
gi|241920023|gb|EER93167.1| hypothetical protein SORBIDRAFT_01g002770 [Sorghum bicolor]
Length = 298
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 11/152 (7%)
Query: 2 REERGVCRAFQRGECTRGDGCKFSHNEQRAANTG-GGPQDRSSRWGHEKFEGFSWGKNDS 60
RE RGVC AFQ+GEC RG C++SH+EQR ANTG G +D +RW H+K +
Sbjct: 130 REARGVCYAFQKGECNRGASCRYSHDEQRNANTGWGSKEDSGARWEHDKH------SDVP 183
Query: 61 SSRATGSGRVALEGNPNQSDR--REEKRSIRHDHREKPREDHGRREDKRSRRHSDNNEFE 118
SR E N S + +E+R++ ++R+ R+ R ++ R S + +
Sbjct: 184 KSRGMCYAFQKGECNRGASCKFSHDEQRNV--NNRQSSRDGEPSRSERYGDRESRSRHDD 241
Query: 119 ARSREDHYRRDEKRPKRHESESYLREDQDRRG 150
R+ + R + P+R E +D+ RG
Sbjct: 242 RRAEDRDRYRRDNSPERLRGERQRNDDRSDRG 273
>gi|255081837|ref|XP_002508137.1| predicted protein [Micromonas sp. RCC299]
gi|226523413|gb|ACO69395.1| predicted protein [Micromonas sp. RCC299]
Length = 314
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 5 RGVCRAFQRGECTRGDGCKFSHNEQRAANTGGGPQDRSSRWGHEKFEGFSWGKND 59
+ VC A+QRGECTRGD C+F+H E GGG R G F G+ D
Sbjct: 191 KPVCYAYQRGECTRGDACRFAHEE------GGGGDSRPPSRGAPICYAFQRGECD 239
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/20 (75%), Positives = 18/20 (90%)
Query: 8 CRAFQRGECTRGDGCKFSHN 27
C AFQ+GECTRGD C+FSH+
Sbjct: 262 CYAFQKGECTRGDACRFSHD 281
Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/21 (71%), Positives = 18/21 (85%)
Query: 7 VCRAFQRGECTRGDGCKFSHN 27
+C AFQRGEC RGD C+FSH+
Sbjct: 229 ICYAFQRGECDRGDSCRFSHD 249
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 8 CRAFQRGECTRGDGCKFSHNE 28
C AFQRGEC RGD C+FSH +
Sbjct: 294 CYAFQRGECDRGDACRFSHEQ 314
>gi|303289687|ref|XP_003064131.1| highly cold-shock DNA binding protein [Micromonas pusilla CCMP1545]
gi|226454447|gb|EEH51753.1| highly cold-shock DNA binding protein [Micromonas pusilla CCMP1545]
Length = 325
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 20/28 (71%)
Query: 4 ERGVCRAFQRGECTRGDGCKFSHNEQRA 31
E G+CR FQRG CTRG GC+FSH A
Sbjct: 150 EAGICRDFQRGNCTRGPGCRFSHGCVIA 177
>gi|301106378|ref|XP_002902272.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262098892|gb|EEY56944.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 528
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 20/25 (80%)
Query: 5 RGVCRAFQRGECTRGDGCKFSHNEQ 29
+GVC FQ+G+CTRGD CKF+H Q
Sbjct: 213 KGVCHKFQQGQCTRGDACKFAHVMQ 237
>gi|348680071|gb|EGZ19887.1| hypothetical protein PHYSODRAFT_489640 [Phytophthora sojae]
Length = 536
Score = 43.1 bits (100), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 2 REERGVCRAFQRGECTRGDGCKFSHNEQ 29
+ ++G+C FQ+G+CTRGD CKF+H Q
Sbjct: 207 KLKKGICHKFQQGQCTRGDACKFAHVMQ 234
>gi|303285404|ref|XP_003061992.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226456403|gb|EEH53704.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 418
Score = 42.4 bits (98), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 16/21 (76%), Positives = 18/21 (85%)
Query: 6 GVCRAFQRGECTRGDGCKFSH 26
G C AFQ+GECTRGD C+FSH
Sbjct: 397 GTCYAFQKGECTRGDACRFSH 417
Score = 42.0 bits (97), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Query: 8 CRAFQRGECTRGDGCKFSHNEQRAANTGGGPQDRSSRWGHEK 49
C AFQ+GEC+RGD C+FSH+ A +GGG + + + +K
Sbjct: 365 CYAFQKGECSRGDACRFSHDPN--AVSGGGFKASGTCYAFQK 404
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/20 (80%), Positives = 18/20 (90%)
Query: 7 VCRAFQRGECTRGDGCKFSH 26
VC AFQ+GECTRGD C+FSH
Sbjct: 291 VCYAFQKGECTRGDSCRFSH 310
Score = 39.7 bits (91), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/20 (75%), Positives = 18/20 (90%)
Query: 8 CRAFQRGECTRGDGCKFSHN 27
C AFQ+GECTRGD C+FSH+
Sbjct: 333 CYAFQKGECTRGDSCRFSHD 352
>gi|340501726|gb|EGR28473.1| hypothetical protein IMG5_174580 [Ichthyophthirius multifiliis]
Length = 222
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 3 EERGVCRAFQRGECTRGDGCKFSHNEQRAAN---TGGGPQDRSSRWGHE 48
++R CRAFQRGEC G+ CK+SH ++R N G + ++ HE
Sbjct: 79 QQRNECRAFQRGECKYGENCKYSHEKRRTCNDFQNGNCKYGENCKYSHE 127
>gi|412993013|emb|CCO16546.1| conserved hypothetical protein [Bathycoccus prasinos]
Length = 266
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/22 (81%), Positives = 18/22 (81%)
Query: 7 VCRAFQRGECTRGDGCKFSHNE 28
VC A QRGECTRGD CKFSH E
Sbjct: 172 VCYAHQRGECTRGDSCKFSHEE 193
Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 7 VCRAFQRGECTRGDGCKFSHNEQRAANTGGG 37
VC AF +GECTRGD C+F+H++ A G
Sbjct: 215 VCFAFLKGECTRGDSCRFAHDKNAAPPKASG 245
Score = 35.4 bits (80), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 6 GVCRAFQRGECTRGDGCKFSHN 27
G C AFQ G C RGD C+F HN
Sbjct: 245 GTCYAFQEGRCDRGDACRFQHN 266
>gi|308805450|ref|XP_003080037.1| putative PMS2 postmeiotic segregation incre (ISS) [Ostreococcus
tauri]
gi|116058496|emb|CAL53685.1| putative PMS2 postmeiotic segregation incre (ISS) [Ostreococcus
tauri]
Length = 1013
Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 7 VCRAFQRGECTRGDGCKFSHNEQRAANTGG--GPQDRSSRWG 46
VC AFQ G C+ GD C+FSH+ + G GP + W
Sbjct: 957 VCYAFQNGNCSYGDSCRFSHDPNAPPSRPGSRGPPGKCYAWA 998
Score = 38.9 bits (89), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 14/19 (73%), Positives = 16/19 (84%)
Query: 8 CRAFQRGECTRGDGCKFSH 26
C AF+RGEC RGD C+FSH
Sbjct: 918 CYAFERGECNRGDSCRFSH 936
>gi|397508315|ref|XP_003824606.1| PREDICTED: zinc finger CCCH domain-containing protein 15-like [Pan
paniscus]
Length = 426
Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 18/21 (85%)
Query: 7 VCRAFQRGECTRGDGCKFSHN 27
VC F++G+CT+GD CKFSH+
Sbjct: 104 VCAFFKQGQCTKGDKCKFSHD 124
>gi|74198521|dbj|BAE39741.1| unnamed protein product [Mus musculus]
Length = 426
Score = 38.9 bits (89), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 18/21 (85%)
Query: 7 VCRAFQRGECTRGDGCKFSHN 27
VC F++G+CT+GD CKFSH+
Sbjct: 104 VCAFFKQGQCTKGDKCKFSHD 124
>gi|255075151|ref|XP_002501250.1| predicted protein [Micromonas sp. RCC299]
gi|226516514|gb|ACO62508.1| predicted protein [Micromonas sp. RCC299]
Length = 333
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 8 CRAFQRGECTRGDGCKFSHNEQRAANT-GGGPQDR 41
C F G CTRGD C+FSH+ A T GGG DR
Sbjct: 232 CHDFSVGRCTRGDKCRFSHDVASAGGTRGGGRSDR 266
>gi|357144602|ref|XP_003573350.1| PREDICTED: zinc finger CCCH domain-containing protein 55-like
[Brachypodium distachyon]
Length = 931
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 57/135 (42%), Gaps = 22/135 (16%)
Query: 2 REERGVCRAFQRGECTRGDGCKFSHNEQRAANTGGGPQDRSSRWGHEKFEG---FSWGKN 58
RE + C+ F G C RG C + H E + G GP D ++ + G +WG+
Sbjct: 362 RENKKPCKFFAEGRCRRGQSCPYLHEETPQSQMGLGPPDEPPKYSDARTTGGNYSNWGEQ 421
Query: 59 DSSSRAT---------------GSGRVALEGNPNQSDRREEKRSIRHDHREKPREDHG-R 102
+++ + G+GRV + R+ K + R ++ P+ED G +
Sbjct: 422 TNATHGSSHILSRDDRENPGSQGTGRVDTG---YEYKNRQLKEAGRSQYQIIPQEDFGSQ 478
Query: 103 REDKRSRRHSDNNEF 117
++K+ S +F
Sbjct: 479 AQNKQEMTASKQPQF 493
>gi|359807047|ref|NP_001241083.1| uncharacterized protein LOC100792988 [Glycine max]
gi|255639180|gb|ACU19889.1| unknown [Glycine max]
Length = 119
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 61/103 (59%), Gaps = 8/103 (7%)
Query: 72 LEGNPNQSDRREEKRSIRHDHRE-KPRE-DHGRREDKRSRRHSDNNEFEARSREDHYRRD 129
+E P RRE+KRSI+ D E +P+ D REDK+SRR D+++F ++SRE H R+
Sbjct: 7 MELEPKDQRRREDKRSIKPDDVEFEPKSRDSDIREDKKSRRR-DDDDFLSKSREPHSNRE 65
Query: 130 EKRPKRH---ESESYLREDQDRRGGDKSSTGRGDSSSHRHRER 169
+ R ++H ES RE+ R+ D+S R DSS +ER
Sbjct: 66 DMRSRKHGEDESAPKSRENYARKQDDRS--YRNDSSRTESKER 106
>gi|145348211|ref|XP_001418549.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578778|gb|ABO96842.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 234
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 8 CRAFQRGECTRGDGCKFSHNEQRAA 32
C AF+RGEC RGD C+FSH AA
Sbjct: 139 CYAFERGECDRGDSCRFSHGPGSAA 163
>gi|299745119|ref|XP_001831487.2| hypothetical protein CC1G_09016 [Coprinopsis cinerea okayama7#130]
gi|298406441|gb|EAU90334.2| hypothetical protein CC1G_09016 [Coprinopsis cinerea okayama7#130]
Length = 1424
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 11/64 (17%)
Query: 7 VCRAFQRGECTRGDGCKFSH----------NEQRA-ANTGGGPQDRSSRWGHEKFEGFSW 55
+CR FQ+G C GD C+ SH + RA AN G P + + WG +W
Sbjct: 432 ICRHFQKGHCIFGDKCQNSHIMHSDIQNYRTKARADANGWGAPAEEDNGWGVSSGNPDAW 491
Query: 56 GKND 59
G++D
Sbjct: 492 GESD 495
>gi|424513562|emb|CCO66184.1| predicted protein [Bathycoccus prasinos]
Length = 841
Score = 35.8 bits (81), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 4 ERGVCRAFQRGECTRGDGCKFSHN 27
E G C AF +G C RGD C+FSH+
Sbjct: 600 EGGPCWAFAQGRCFRGDSCRFSHD 623
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.311 0.129 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,973,818,830
Number of Sequences: 23463169
Number of extensions: 130181030
Number of successful extensions: 801121
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4165
Number of HSP's successfully gapped in prelim test: 14530
Number of HSP's that attempted gapping in prelim test: 602818
Number of HSP's gapped (non-prelim): 133603
length of query: 169
length of database: 8,064,228,071
effective HSP length: 129
effective length of query: 40
effective length of database: 9,332,446,566
effective search space: 373297862640
effective search space used: 373297862640
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 71 (32.0 bits)