BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030923
(169 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SD61|C3H42_ARATH Zinc finger CCCH domain-containing protein 42 OS=Arabidopsis
thaliana GN=At3g47120 PE=2 SV=1
Length = 352
Score = 79.7 bits (195), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 38/49 (77%), Positives = 43/49 (87%), Gaps = 1/49 (2%)
Query: 2 REERGVCRAFQRGECTRGDGCKFSHNEQRAANTGGG-PQDRSSRWGHEK 49
RE RGVCRAFQRGECTRGD CKFSH+E+RAANTG G +DRSS+W H+K
Sbjct: 130 REARGVCRAFQRGECTRGDSCKFSHDEKRAANTGWGHEEDRSSKWDHDK 178
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 85/174 (48%), Gaps = 45/174 (25%)
Query: 2 REERGVCRAFQRGECTRGDGCKFSHNEQRAANTGGG-PQDRSSRWGHEKFEG-------- 52
RE RGVCRAFQRGECTRGD CKFSH+E+RAA TG G +DRSS+W +K G
Sbjct: 180 REGRGVCRAFQRGECTRGDSCKFSHDEKRAATTGWGHEEDRSSKWDQDKLNGAKKGGTSF 239
Query: 53 -----FSWGKNDSSSRATGSGRVALEGNPNQ----------------SDRREEKRSIRHD 91
F + S R G G + G P + D +E+KRS R+D
Sbjct: 240 GNRGDFKPDVEEKSYRGRGDGDASY-GRPKERERVDREDMGPRSRDAYDMKEQKRSGRYD 298
Query: 92 HR---------EKPREDHGRREDKRSRRHS----DNNEFEARSREDHYRRDEKR 132
+ + RED G R +R + D N+ E + R D RR+++R
Sbjct: 299 NAYSRRHNDEIDYVREDKGSRAQDWEKRKAESRRDRNDREEKDR-DSLRREDRR 351
>sp|Q10B98|C3H25_ORYSJ Zinc finger CCCH domain-containing protein 25 OS=Oryza sativa
subsp. japonica GN=Os03g0826400 PE=2 SV=1
Length = 312
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 67/190 (35%), Positives = 91/190 (47%), Gaps = 33/190 (17%)
Query: 2 REERGVCRAFQRGECTRGDGCKFSHNEQRAANTGGGPQDRS-SRW----------GHEKF 50
RE RGVC AFQ+GEC RG C++SH+EQR ANTG G ++ S +RW H+KF
Sbjct: 130 REARGVCYAFQKGECNRGASCRYSHDEQRNANTGWGSKEESKARWEHDRHHEPPMSHKKF 189
Query: 51 EGFSWGKNDSSSRATGSGRVALEGNPNQSDRRE--EKRSIRHDHREKPREDHGR----RE 104
S G+ RA + G QS R E + R R H ++ +DH R R
Sbjct: 190 PS-SAGEQRFPDRAKEENKST--GREGQSSRSEAYKDRDSRLRHSDRGSKDHDRYRHDRS 246
Query: 105 DKRSR--RHSDNNEFEARSREDHYRRDEKRPKRHESESYLREDQDRRGGDKSSTG----R 158
+RSR R +N+ + RDEK + + DQ R D S+G R
Sbjct: 247 PERSRGDRQRNNDRYAQG-------RDEKSERYRSEVKHDEGDQKRSRRDTDSSGHYERR 299
Query: 159 GDSSSHRHRE 168
G+ S R+R+
Sbjct: 300 GNEDSERYRK 309
>sp|Q8WU90|ZC3HF_HUMAN Zinc finger CCCH domain-containing protein 15 OS=Homo sapiens
GN=ZC3H15 PE=1 SV=1
Length = 426
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 18/21 (85%)
Query: 7 VCRAFQRGECTRGDGCKFSHN 27
VC F++G+CT+GD CKFSH+
Sbjct: 104 VCAFFKQGQCTKGDKCKFSHD 124
>sp|Q6U6G5|ZC3HF_RAT Zinc finger CCCH domain-containing protein 15 OS=Rattus norvegicus
GN=Zc3h15 PE=2 SV=1
Length = 426
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 18/21 (85%)
Query: 7 VCRAFQRGECTRGDGCKFSHN 27
VC F++G+CT+GD CKFSH+
Sbjct: 104 VCAFFKQGQCTKGDKCKFSHD 124
>sp|Q3TIV5|ZC3HF_MOUSE Zinc finger CCCH domain-containing protein 15 OS=Mus musculus
GN=Zc3h15 PE=1 SV=2
Length = 426
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 18/21 (85%)
Query: 7 VCRAFQRGECTRGDGCKFSHN 27
VC F++G+CT+GD CKFSH+
Sbjct: 104 VCAFFKQGQCTKGDKCKFSHD 124
>sp|Q1RMM1|ZC3HF_BOVIN Zinc finger CCCH domain-containing protein 15 OS=Bos taurus
GN=ZC3H15 PE=2 SV=1
Length = 426
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 18/21 (85%)
Query: 7 VCRAFQRGECTRGDGCKFSHN 27
VC F++G+CT+GD CKFSH+
Sbjct: 104 VCAFFKQGQCTKGDKCKFSHD 124
>sp|Q6YYC0|C3H55_ORYSJ Zinc finger CCCH domain-containing protein 55 OS=Oryza sativa
subsp. japonica GN=Os08g0135800 PE=2 SV=1
Length = 958
Score = 34.7 bits (78), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 2 REERGVCRAFQRGECTRGDGCKFSHNEQRAANTGGGPQDRSSRWGHEKFEG--FSWGKND 59
R + C+ F G C RG C + H E + G G D G G SW + +
Sbjct: 373 RTNKNPCKFFANGGCRRGQNCPYLHEEASQSQMGLGAPDEPGYTGGPTTRGDYLSWSEQN 432
Query: 60 SSSRAT 65
+S +A+
Sbjct: 433 NSVQAS 438
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.129 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,444,902
Number of Sequences: 539616
Number of extensions: 3128121
Number of successful extensions: 20227
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 936
Number of HSP's that attempted gapping in prelim test: 11927
Number of HSP's gapped (non-prelim): 6038
length of query: 169
length of database: 191,569,459
effective HSP length: 109
effective length of query: 60
effective length of database: 132,751,315
effective search space: 7965078900
effective search space used: 7965078900
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.6 bits)