Query 030923
Match_columns 169
No_of_seqs 24 out of 26
Neff 2.7
Searched_HMMs 46136
Date Fri Mar 29 06:37:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030923.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030923hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00356 ZnF_C3H1 zinc finge 97.8 1.1E-05 2.3E-10 45.7 1.2 24 5-28 4-27 (27)
2 PF00642 zf-CCCH: Zinc finger 97.4 5.2E-05 1.1E-09 44.8 0.6 24 5-28 3-27 (27)
3 KOG2494 C3H1-type Zn-finger pr 95.6 0.004 8.6E-08 56.2 0.7 25 5-29 37-62 (331)
4 KOG1763 Uncharacterized conser 92.9 0.04 8.7E-07 50.0 0.8 49 7-57 94-147 (343)
5 COG5152 Uncharacterized conser 91.3 0.076 1.6E-06 46.5 0.6 46 6-55 142-188 (259)
6 KOG1595 CCCH-type Zn-finger pr 89.7 0.15 3.2E-06 48.8 1.1 22 6-27 237-258 (528)
7 KOG2494 C3H1-type Zn-finger pr 89.2 0.15 3.3E-06 46.2 0.8 24 5-29 71-94 (331)
8 COG5252 Uncharacterized conser 84.9 0.32 7E-06 43.4 0.4 22 6-27 86-107 (299)
9 KOG1813 Predicted E3 ubiquitin 84.7 0.35 7.5E-06 43.8 0.5 18 11-28 193-210 (313)
10 KOG2185 Predicted RNA-processi 84.4 0.47 1E-05 44.9 1.2 26 4-29 139-164 (486)
11 KOG1039 Predicted E3 ubiquitin 83.2 0.45 9.8E-06 43.0 0.6 25 6-30 9-33 (344)
12 KOG1677 CCCH-type Zn-finger pr 81.1 0.74 1.6E-05 39.0 1.1 24 6-29 178-202 (332)
13 PF14608 zf-CCCH_2: Zinc finge 73.8 1.9 4.1E-05 23.9 1.0 11 16-26 8-18 (19)
14 KOG2333 Uncharacterized conser 50.5 7.8 0.00017 37.9 1.2 25 6-30 77-104 (614)
15 KOG1492 C3H1-type Zn-finger pr 49.4 7.8 0.00017 35.1 0.9 49 5-53 233-287 (377)
16 KOG4791 Uncharacterized conser 44.3 9.1 0.0002 37.5 0.6 28 6-33 4-31 (667)
17 KOG2202 U2 snRNP splicing fact 42.9 11 0.00024 33.5 0.8 23 6-28 153-175 (260)
18 KOG0153 Predicted RNA-binding 42.5 10 0.00022 35.3 0.6 25 5-29 161-185 (377)
19 KOG1040 Polyadenylation factor 38.4 13 0.00028 33.6 0.6 24 5-28 77-100 (325)
20 COG5084 YTH1 Cleavage and poly 24.5 45 0.00097 29.9 1.6 33 3-35 161-196 (285)
21 KOG1677 CCCH-type Zn-finger pr 21.5 38 0.00083 28.7 0.6 22 11-32 139-161 (332)
22 KOG0126 Predicted RNA-binding 20.8 36 0.00078 29.7 0.2 40 21-60 165-205 (219)
No 1
>smart00356 ZnF_C3H1 zinc finger.
Probab=97.77 E-value=1.1e-05 Score=45.66 Aligned_cols=24 Identities=46% Similarity=1.041 Sum_probs=21.6
Q ss_pred cccchhhhcccccCCCCcccccch
Q 030923 5 RGVCRAFQRGECTRGDGCKFSHNE 28 (169)
Q Consensus 5 ~~vc~afq~gec~rg~~crfshd~ 28 (169)
.-+|..|++|+|..|++|+|+|+.
T Consensus 4 ~~~C~~~~~g~C~~g~~C~~~H~~ 27 (27)
T smart00356 4 TELCKFFKRGYCPYGDRCKFAHPL 27 (27)
T ss_pred CCcCcCccCCCCCCCCCcCCCCcC
Confidence 348999999999999999999974
No 2
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=97.39 E-value=5.2e-05 Score=44.78 Aligned_cols=24 Identities=50% Similarity=1.144 Sum_probs=18.5
Q ss_pred cccchhhhc-ccccCCCCcccccch
Q 030923 5 RGVCRAFQR-GECTRGDGCKFSHNE 28 (169)
Q Consensus 5 ~~vc~afq~-gec~rg~~crfshd~ 28 (169)
..+|..|++ |.|.+|+.|+|+|++
T Consensus 3 ~~~C~~f~~~g~C~~G~~C~f~H~~ 27 (27)
T PF00642_consen 3 TKLCRFFMRTGTCPFGDKCRFAHGE 27 (27)
T ss_dssp SSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred cccChhhccCCccCCCCCcCccCCC
Confidence 458998888 999999999999985
No 3
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=95.62 E-value=0.004 Score=56.22 Aligned_cols=25 Identities=52% Similarity=1.117 Sum_probs=22.3
Q ss_pred cccchhhhcccccCCCC-cccccchh
Q 030923 5 RGVCRAFQRGECTRGDG-CKFSHNEQ 29 (169)
Q Consensus 5 ~~vc~afq~gec~rg~~-crfshd~~ 29 (169)
+-||.+||+|-|+||+- |+|-|-+.
T Consensus 37 ~eVCReF~rn~C~R~d~~CkfaHP~~ 62 (331)
T KOG2494|consen 37 LEVCREFLRNTCSRGDRECKFAHPPK 62 (331)
T ss_pred HHHHHHHHhccccCCCccccccCCCC
Confidence 45999999999999999 99999775
No 4
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=92.87 E-value=0.04 Score=50.00 Aligned_cols=49 Identities=39% Similarity=0.733 Sum_probs=35.6
Q ss_pred cchhhhcccccCCCCcccccchhccccCCCC----C-CCCCCccccccccCCCCCC
Q 030923 7 VCRAFQRGECTRGDGCKFSHNEQRAANTGGG----P-QDRSSRWGHEKFEGFSWGK 57 (169)
Q Consensus 7 vc~afq~gec~rg~~crfshd~~~~a~~g~g----~-~~~~~~w~~d~~~~~~k~~ 57 (169)
||--|..|.|+-|+-|+||||.+..--.--- + .+-| |..++..+..-++
T Consensus 94 vCafFk~g~C~KG~kCKFsHdl~~~~k~eK~dly~d~rdem--WD~~kl~~vv~~K 147 (343)
T KOG1763|consen 94 VCAFFKQGTCTKGDKCKFSHDLAVERKKEKIDLYPDTRDEM--WDEEKLEEVVLKK 147 (343)
T ss_pred HHHHHhccCCCCCCcccccchHHHhhhccchhccccchhhh--hhHHHHHHHHHhh
Confidence 7999999999999999999999865433211 1 2335 9988887665433
No 5
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=91.30 E-value=0.076 Score=46.46 Aligned_cols=46 Identities=33% Similarity=0.630 Sum_probs=31.4
Q ss_pred ccchhh-hcccccCCCCcccccchhccccCCCCCCCCCCccccccccCCCC
Q 030923 6 GVCRAF-QRGECTRGDGCKFSHNEQRAANTGGGPQDRSSRWGHEKFEGFSW 55 (169)
Q Consensus 6 ~vc~af-q~gec~rg~~crfshd~~~~a~~g~g~~~~~~~w~~d~~~~~~k 55 (169)
-||-.| |+|-|.+|++|+|.|+-. .--|||-- ..-|..+.-.++.+
T Consensus 142 dVCKdyk~TGYCGYGDsCKflH~R~-D~KtGWkL---n~EWnA~~Ee~~v~ 188 (259)
T COG5152 142 DVCKDYKETGYCGYGDSCKFLHDRS-DFKTGWKL---NQEWNAEYEEAPVI 188 (259)
T ss_pred ccccchhhcccccCCchhhhhhhhh-hhhccccc---chhhcchhhhcccc
Confidence 477666 799999999999999854 34678863 23465544444443
No 6
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=89.68 E-value=0.15 Score=48.75 Aligned_cols=22 Identities=41% Similarity=1.192 Sum_probs=20.5
Q ss_pred ccchhhhcccccCCCCcccccc
Q 030923 6 GVCRAFQRGECTRGDGCKFSHN 27 (169)
Q Consensus 6 ~vc~afq~gec~rg~~crfshd 27 (169)
-+|++|-+|-|.+||+|-|.|.
T Consensus 237 tpCPefrkG~C~rGD~CEyaHg 258 (528)
T KOG1595|consen 237 TPCPEFRKGSCERGDSCEYAHG 258 (528)
T ss_pred ccCcccccCCCCCCCccccccc
Confidence 3799999999999999999996
No 7
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=89.15 E-value=0.15 Score=46.25 Aligned_cols=24 Identities=38% Similarity=0.768 Sum_probs=21.5
Q ss_pred cccchhhhcccccCCCCcccccchh
Q 030923 5 RGVCRAFQRGECTRGDGCKFSHNEQ 29 (169)
Q Consensus 5 ~~vc~afq~gec~rg~~crfshd~~ 29 (169)
...||+||+|+|+|-. |||-|-++
T Consensus 71 v~aC~Ds~kgrCsR~n-CkylHpp~ 94 (331)
T KOG2494|consen 71 VIACFDSQKGRCSREN-CKYLHPPQ 94 (331)
T ss_pred EEEEeccccCccCccc-ceecCCCh
Confidence 4569999999999988 99999886
No 8
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=84.92 E-value=0.32 Score=43.44 Aligned_cols=22 Identities=45% Similarity=1.061 Sum_probs=20.9
Q ss_pred ccchhhhcccccCCCCcccccc
Q 030923 6 GVCRAFQRGECTRGDGCKFSHN 27 (169)
Q Consensus 6 ~vc~afq~gec~rg~~crfshd 27 (169)
-||--|..+.|+-|+.|.|+|+
T Consensus 86 ~vcalF~~~~c~kg~~ckF~h~ 107 (299)
T COG5252 86 VVCALFLNKTCAKGDACKFAHG 107 (299)
T ss_pred HHHHHhccCccccCchhhhhcc
Confidence 3899999999999999999999
No 9
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.72 E-value=0.35 Score=43.77 Aligned_cols=18 Identities=44% Similarity=0.936 Sum_probs=16.3
Q ss_pred hhcccccCCCCcccccch
Q 030923 11 FQRGECTRGDGCKFSHNE 28 (169)
Q Consensus 11 fq~gec~rg~~crfshd~ 28 (169)
=++|.|..|+||+|.|+-
T Consensus 193 keTgycg~gdSckFlh~r 210 (313)
T KOG1813|consen 193 KETGYCGYGDSCKFLHDR 210 (313)
T ss_pred HhhCcccccchhhhhhhh
Confidence 379999999999999984
No 10
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=84.43 E-value=0.47 Score=44.92 Aligned_cols=26 Identities=35% Similarity=0.846 Sum_probs=22.7
Q ss_pred ccccchhhhcccccCCCCcccccchh
Q 030923 4 ERGVCRAFQRGECTRGDGCKFSHNEQ 29 (169)
Q Consensus 4 ~~~vc~afq~gec~rg~~crfshd~~ 29 (169)
+.-.|.-|+-|+|--+.+|||||.-.
T Consensus 139 sMkpC~ffLeg~CRF~enCRfSHG~~ 164 (486)
T KOG2185|consen 139 SMKPCKFFLEGRCRFGENCRFSHGLD 164 (486)
T ss_pred hhccchHhhccccccCcccccccCcc
Confidence 44579999999999999999999753
No 11
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.16 E-value=0.45 Score=43.02 Aligned_cols=25 Identities=36% Similarity=0.923 Sum_probs=23.6
Q ss_pred ccchhhhcccccCCCCcccccchhc
Q 030923 6 GVCRAFQRGECTRGDGCKFSHNEQR 30 (169)
Q Consensus 6 ~vc~afq~gec~rg~~crfshd~~~ 30 (169)
-||--||+|.|..|+-|||+|+...
T Consensus 9 tic~~~~~g~c~~g~~cr~~h~~~~ 33 (344)
T KOG1039|consen 9 TICKYYQKGNCKFGDLCRLSHSLPD 33 (344)
T ss_pred hhhhhcccccccccceeeeeccCch
Confidence 7999999999999999999999874
No 12
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=81.14 E-value=0.74 Score=38.99 Aligned_cols=24 Identities=42% Similarity=1.002 Sum_probs=21.6
Q ss_pred ccchhhhc-ccccCCCCcccccchh
Q 030923 6 GVCRAFQR-GECTRGDGCKFSHNEQ 29 (169)
Q Consensus 6 ~vc~afq~-gec~rg~~crfshd~~ 29 (169)
-.|--|++ |-|.+|+-|+|-|-..
T Consensus 178 ~lC~~f~~tG~C~yG~rC~F~H~~~ 202 (332)
T KOG1677|consen 178 KLCPKFQKTGLCKYGSRCRFIHGEP 202 (332)
T ss_pred cCCCccccCCCCCCCCcCeecCCCc
Confidence 36888998 9999999999999876
No 13
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=73.78 E-value=1.9 Score=23.88 Aligned_cols=11 Identities=73% Similarity=1.576 Sum_probs=10.7
Q ss_pred ccCCCCccccc
Q 030923 16 CTRGDGCKFSH 26 (169)
Q Consensus 16 c~rg~~crfsh 26 (169)
|+.++.|.|+|
T Consensus 8 C~~~~~C~f~H 18 (19)
T PF14608_consen 8 CTNGDNCPFSH 18 (19)
T ss_pred CCCCCcCccCC
Confidence 99999999999
No 14
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=50.50 E-value=7.8 Score=37.88 Aligned_cols=25 Identities=32% Similarity=0.935 Sum_probs=21.7
Q ss_pred ccchhhhcc---cccCCCCcccccchhc
Q 030923 6 GVCRAFQRG---ECTRGDGCKFSHNEQR 30 (169)
Q Consensus 6 ~vc~afq~g---ec~rg~~crfshd~~~ 30 (169)
..|+.+..| .|..|+-|||-||-..
T Consensus 77 ~LCPsli~g~~~~C~f~d~Crf~HDi~a 104 (614)
T KOG2333|consen 77 RLCPSLIQGDISKCSFGDNCRFVHDIEA 104 (614)
T ss_pred ccChHhhcCCCccCcccccccccccHHH
Confidence 469998887 7999999999999764
No 15
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=49.39 E-value=7.8 Score=35.06 Aligned_cols=49 Identities=20% Similarity=0.533 Sum_probs=33.3
Q ss_pred cccchhhhcccccCCCCcccccchhccccCC-----CCC-CCCCCccccccccCC
Q 030923 5 RGVCRAFQRGECTRGDGCKFSHNEQRAANTG-----GGP-QDRSSRWGHEKFEGF 53 (169)
Q Consensus 5 ~~vc~afq~gec~rg~~crfshd~~~~a~~g-----~g~-~~~~~~w~~d~~~~~ 53 (169)
.-||+.|+.|.|+....|-+||....---.+ .|- ..+.-+|.|-.+.+.
T Consensus 233 kticpkflngrcnkaedcnlsheldprripacryfllgkcnnpncryvhihysen 287 (377)
T KOG1492|consen 233 KTICPKFLNGRCNKAEDCNLSHELDPRRIPACRYFLLGKCNNPNCRYVHIHYSEN 287 (377)
T ss_pred cccChHHhcCccCchhcCCcccccCccccchhhhhhhccCCCCCceEEEEeecCC
Confidence 4589999999999999999999755321111 122 556667776665543
No 16
>KOG4791 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.32 E-value=9.1 Score=37.48 Aligned_cols=28 Identities=36% Similarity=0.719 Sum_probs=24.5
Q ss_pred ccchhhhcccccCCCCcccccchhcccc
Q 030923 6 GVCRAFQRGECTRGDGCKFSHNEQRAAN 33 (169)
Q Consensus 6 ~vc~afq~gec~rg~~crfshd~~~~a~ 33 (169)
.-||-||--+|.-+++|-|+|.+..--|
T Consensus 4 ~dcyff~ys~cKk~d~c~~rh~E~al~n 31 (667)
T KOG4791|consen 4 EDCYFFFYSTCKKGDSCPFRHCEAALGN 31 (667)
T ss_pred ccchhhhhhhhhccCcCcchhhHHHhcC
Confidence 4699999999999999999999975444
No 17
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=42.85 E-value=11 Score=33.53 Aligned_cols=23 Identities=43% Similarity=1.123 Sum_probs=21.3
Q ss_pred ccchhhhcccccCCCCcccccch
Q 030923 6 GVCRAFQRGECTRGDGCKFSHNE 28 (169)
Q Consensus 6 ~vc~afq~gec~rg~~crfshd~ 28 (169)
.+|-.|.+++|++|.-|-|-|--
T Consensus 153 a~C~~~e~~~C~rG~~CnFmH~k 175 (260)
T KOG2202|consen 153 AICGQFERTECSRGGACNFMHVK 175 (260)
T ss_pred hhhcccccccCCCCCcCcchhhh
Confidence 57999999999999999999976
No 18
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=42.47 E-value=10 Score=35.31 Aligned_cols=25 Identities=36% Similarity=0.982 Sum_probs=21.8
Q ss_pred cccchhhhcccccCCCCcccccchh
Q 030923 5 RGVCRAFQRGECTRGDGCKFSHNEQ 29 (169)
Q Consensus 5 ~~vc~afq~gec~rg~~crfshd~~ 29 (169)
--||--|-+|||.||+-|-|-|.-.
T Consensus 161 p~Icsf~v~geckRG~ec~yrhEkp 185 (377)
T KOG0153|consen 161 PHICSFFVKGECKRGAECPYRHEKP 185 (377)
T ss_pred CccccceeeccccccccccccccCC
Confidence 3589999999999999999998654
No 19
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=38.41 E-value=13 Score=33.61 Aligned_cols=24 Identities=42% Similarity=1.014 Sum_probs=21.2
Q ss_pred cccchhhhcccccCCCCcccccch
Q 030923 5 RGVCRAFQRGECTRGDGCKFSHNE 28 (169)
Q Consensus 5 ~~vc~afq~gec~rg~~crfshd~ 28 (169)
..||--+++|-|.-|+.|-|+|.-
T Consensus 77 ~~vcK~~l~glC~kgD~C~Flhe~ 100 (325)
T KOG1040|consen 77 KVVCKHWLRGLCKKGDQCEFLHEY 100 (325)
T ss_pred ceeehhhhhhhhhccCcCcchhhh
Confidence 468999999999999999999974
No 20
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=24.53 E-value=45 Score=29.87 Aligned_cols=33 Identities=33% Similarity=0.670 Sum_probs=0.0
Q ss_pred cccccchhhh---cccccCCCCcccccchhccccCC
Q 030923 3 EERGVCRAFQ---RGECTRGDGCKFSHNEQRAANTG 35 (169)
Q Consensus 3 e~~~vc~afq---~gec~rg~~crfshd~~~~a~~g 35 (169)
+.-|+|..|+ .+-|..|++|+|+|...+..-.+
T Consensus 161 ~~~~~~~~~~~~~~~f~p~g~~c~~~H~~~~~~~~~ 196 (285)
T COG5084 161 SFAGNCDQYSGATYGFCPLGASCKFSHTLKRVSYGS 196 (285)
T ss_pred cccccccccCcccccccCCCCccccccccccccccc
No 21
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=21.49 E-value=38 Score=28.72 Aligned_cols=22 Identities=27% Similarity=0.741 Sum_probs=17.4
Q ss_pred hhcccccC-CCCcccccchhccc
Q 030923 11 FQRGECTR-GDGCKFSHNEQRAA 32 (169)
Q Consensus 11 fq~gec~r-g~~crfshd~~~~a 32 (169)
...|-|.+ |..|+|-|.....-
T Consensus 139 ~~~g~c~y~ge~crfah~~~e~r 161 (332)
T KOG1677|consen 139 RKSGTCKYRGEQCRFAHGLEELR 161 (332)
T ss_pred ecCccccccCchhhhcCCccccc
Confidence 35789999 99999988765443
No 22
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=20.79 E-value=36 Score=29.75 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=31.8
Q ss_pred CcccccchhccccCCCCC-CCCCCccccccccCCCCCCCCC
Q 030923 21 GCKFSHNEQRAANTGGGP-QDRSSRWGHEKFEGFSWGKNDS 60 (169)
Q Consensus 21 ~crfshd~~~~a~~g~g~-~~~~~~w~~d~~~~~~k~~~~~ 60 (169)
+|++||+....|.++|+. +...++|......+..+....+
T Consensus 165 ~~K~~~~~~~~a~~~~~rE~~r~~k~~~~~~~~a~d~~r~~ 205 (219)
T KOG0126|consen 165 SKKHSKKNKERAQKSWPREKRRLPKWRTAKLGGAEDLEREL 205 (219)
T ss_pred chhhhhhhHHHhhhccchhhhhhhhhhhhhhcccccccchh
Confidence 788999999999999987 4558888888888777765544
Done!