Query 030925
Match_columns 169
No_of_seqs 129 out of 1130
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 10:16:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030925.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030925hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ftc_E L12MT, MRP-L12, 39S rib 100.0 6.9E-45 2.4E-49 286.0 14.6 131 39-169 1-137 (137)
2 2j01_L 50S ribosomal protein L 100.0 1.3E-40 4.5E-45 258.3 13.8 121 40-168 4-124 (125)
3 2zjq_5 50S ribosomal protein L 100.0 3.8E-40 1.3E-44 254.8 13.6 118 40-168 4-121 (122)
4 1dd3_A 50S ribosomal protein L 100.0 1.8E-41 6.3E-46 264.0 2.6 122 41-168 3-127 (128)
5 3sgf_J 50S ribosomal protein L 100.0 4.4E-41 1.5E-45 259.7 -0.7 117 40-168 4-120 (121)
6 1ctf_A Ribosomal protein L7/L1 100.0 3.3E-30 1.1E-34 184.4 7.0 71 97-168 3-73 (74)
7 1dd4_C 50S ribosomal protein L 99.1 5.5E-11 1.9E-15 75.9 5.1 35 40-74 2-36 (40)
8 1zav_U 50S ribosomal protein L 98.6 4.5E-08 1.6E-12 58.9 3.6 28 41-68 3-30 (30)
9 2cp9_A EF-TS, EF-TSMT, elongat 83.7 0.82 2.8E-05 31.3 2.9 27 115-141 10-36 (64)
10 1aip_C EF-TS, elongation facto 64.6 5.2 0.00018 32.6 3.5 29 115-143 4-32 (196)
11 1xb2_B EF-TS, elongation facto 60.8 6.2 0.00021 33.7 3.4 29 115-143 5-33 (291)
12 2jml_A DNA binding domain/tran 53.5 10 0.00035 25.3 2.9 28 113-140 51-78 (81)
13 1mul_A NS2, HU-2, DNA binding 44.8 12 0.0004 25.7 2.1 35 113-147 2-36 (90)
14 1b8z_A Protein (histonelike pr 43.7 12 0.00042 25.5 2.1 35 113-147 2-36 (90)
15 3rhi_A DNA-binding protein HU; 42.9 11 0.00037 26.2 1.7 34 113-146 5-38 (93)
16 3c4i_A DNA-binding protein HU 41.7 14 0.00048 25.9 2.2 35 113-147 2-36 (99)
17 1p71_A DNA-binding protein HU; 41.4 14 0.00049 25.5 2.2 35 113-147 2-36 (94)
18 2o97_B NS1, HU-1, DNA-binding 41.0 13 0.00044 25.5 1.9 34 113-146 2-35 (90)
19 1q08_A Zn(II)-responsive regul 40.7 30 0.001 23.4 3.7 25 113-138 4-28 (99)
20 1owf_A IHF-alpha, integration 37.7 17 0.00059 25.4 2.1 35 113-147 4-38 (99)
21 1exe_A Transcription factor 1; 35.4 13 0.00046 26.1 1.2 35 113-147 2-36 (99)
22 1owf_B IHF-beta, integration H 34.0 22 0.00074 24.5 2.1 34 113-146 2-36 (94)
23 2w9r_A YLJA, ATP-dependent CLP 31.7 1.4E+02 0.005 21.6 6.4 72 97-169 23-104 (108)
24 1ctf_A Ribosomal protein L7/L1 30.9 48 0.0017 23.1 3.5 23 39-61 20-42 (74)
25 2p63_A Cell division control p 30.5 54 0.0018 21.8 3.4 27 41-67 27-53 (56)
26 1r8e_A Multidrug-efflux transp 27.8 51 0.0017 25.9 3.6 28 111-139 49-76 (278)
27 2np2_A HBB; protein-DNA comple 26.4 27 0.00094 24.8 1.6 34 113-146 10-48 (108)
28 1l0i_A Acyl carrier protein; a 25.7 64 0.0022 20.3 3.2 22 50-71 34-55 (78)
29 3gpv_A Transcriptional regulat 24.7 77 0.0026 23.5 3.9 25 113-138 61-85 (148)
30 1f80_D Acyl carrier protein; t 24.7 68 0.0023 20.4 3.2 22 49-70 37-58 (81)
31 3dnj_A ATP-dependent CLP prote 24.5 1.8E+02 0.0062 20.3 6.0 61 99-160 4-68 (85)
32 2lol_A ACP, acyl carrier prote 24.4 72 0.0024 20.2 3.3 23 49-71 36-58 (81)
33 3a1y_A 50S ribosomal protein P 23.8 33 0.0011 22.4 1.5 16 152-167 19-34 (58)
34 2amw_A Hypothetical protein NE 23.5 56 0.0019 21.2 2.6 20 52-71 38-57 (83)
35 1in0_A YAJQ protein, HI1034; a 23.5 41 0.0014 26.8 2.2 63 103-167 47-122 (163)
36 3gzm_A Acyl carrier protein; h 23.5 74 0.0025 20.4 3.2 22 50-71 36-57 (81)
37 1x3o_A Acyl carrier protein; s 23.3 79 0.0027 19.8 3.3 21 50-70 36-56 (80)
38 2j01_L 50S ribosomal protein L 22.7 86 0.0029 23.8 3.8 28 39-67 72-99 (125)
39 3gp4_A Transcriptional regulat 22.4 93 0.0032 23.0 4.0 25 113-138 47-71 (142)
40 2zjq_5 50S ribosomal protein L 22.2 91 0.0031 23.5 3.9 28 39-67 69-96 (122)
41 2ehs_A ACP, acyl carrier prote 22.2 84 0.0029 19.4 3.2 21 50-70 32-52 (77)
42 2qnw_A Acyl carrier protein; m 21.9 83 0.0028 20.2 3.2 22 49-70 37-58 (82)
43 2jq4_A AGR_C_4658P, hypothetic 21.8 80 0.0027 22.0 3.3 21 50-70 54-74 (105)
44 2l4b_A Acyl carrier protein; i 21.5 84 0.0029 20.5 3.2 21 50-70 42-62 (88)
45 2zhg_A Redox-sensitive transcr 21.1 87 0.003 23.5 3.6 26 113-139 55-80 (154)
46 2kwl_A ACP, acyl carrier prote 21.0 86 0.0029 20.1 3.2 23 49-71 39-61 (84)
47 3fxd_A Protein ICMQ; helix bun 20.7 62 0.0021 21.6 2.3 19 144-162 2-20 (57)
No 1
>2ftc_E L12MT, MRP-L12, 39S ribosomal protein L12, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=100.00 E-value=6.9e-45 Score=286.00 Aligned_cols=131 Identities=34% Similarity=0.486 Sum_probs=110.8
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC--CCCCCC---chhhhhhhcceeeEEEeecCcch
Q 030925 39 QKLERISDELLDLTKLERYDFATLLGCKLGLDRFGPVVPAFPSSGP--AASGST---SAETKAAEKTAFDVKLEKYDQAA 113 (169)
Q Consensus 39 ~kv~~Ivd~I~~LtLlE~seLv~~leekfgv~~~a~~~~~~~~~~~--aa~~~~---~~~~~~~EKt~f~V~L~~~~~~k 113 (169)
+|+++|+|+|++|||+|++||++.|+++|||++.++++++++++++ ++++++ .++++.+|||+|||+|++||+++
T Consensus 1 ~kv~~ive~i~~LtllE~~eLv~~leekfgv~aaa~~~~~~~~~~~~~~a~a~~~~~~~a~~~eEKteFdV~L~~~~a~~ 80 (137)
T 2ftc_E 1 PKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLMPMGGMVPGAAPAPTAPEAAEEDVPKQKERTHFTVRLTEAKPVD 80 (137)
T ss_pred CcHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcccccccccccccCCCCccccccccccccccccCCeeEEEeeccCccc
Confidence 5899999999999999999999999999999987654333211111 111101 11233579999999999999899
Q ss_pred hHHHHHHHHHh-hCCChhHHHHHHhhcchhhhcCCCHHHHHHHHHHHHHcCcEEEeC
Q 030925 114 KIKIIKEVKTF-TGLGLKESKDLVEKAPAVIKKGVTKEEADKIVEKLKELNAIVVLE 169 (169)
Q Consensus 114 Ki~vIK~VR~i-t~LgLkEAK~lVe~~P~~IKe~vsKeeAE~ik~kLe~aGA~veiE 169 (169)
||+|||+||++ |||||||||+|||++|++||+|+||+|||+||++|+++||+|+||
T Consensus 81 KI~VIK~VR~i~TgLgLkEAK~lVe~aP~~iKe~vsKeeAE~iK~kLe~aGA~Vele 137 (137)
T 2ftc_E 81 KVKLIKEIKNYVQGINLVQAKKLVESLPQEIKANVAKAEAEKIKAALEAVGGTVVLE 137 (137)
T ss_pred hhHHHHHHHHhccCCChHHHHHHHHhCCHHHHcCCCHHHHHHHHHHHHHcCCEEEeC
Confidence 99999999997 999999999999999999999999999999999999999999997
No 2
>2j01_L 50S ribosomal protein L7; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_L 3i8i_I
Probab=100.00 E-value=1.3e-40 Score=258.31 Aligned_cols=121 Identities=45% Similarity=0.622 Sum_probs=105.4
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCchhhhhhhcceeeEEEeecCcchhHHHHH
Q 030925 40 KLERISDELLDLTKLERYDFATLLGCKLGLDRFGPVVPAFPSSGPAASGSTSAETKAAEKTAFDVKLEKYDQAAKIKIIK 119 (169)
Q Consensus 40 kv~~Ivd~I~~LtLlE~seLv~~leekfgv~~~a~~~~~~~~~~~aa~~~~~~~~~~~EKt~f~V~L~~~~~~kKi~vIK 119 (169)
++++|+|+|++||++|++||++.|+++|||++.+|+++++ +|++++ .+++.+|||+|||+|++|+ ++||+|||
T Consensus 4 ~~~~i~e~i~~ltllE~~eLv~~lee~fgv~aaapva~~~---~~~~a~---~a~a~eEKteFdV~L~~~~-~~KI~VIK 76 (125)
T 2j01_L 4 DIERIKEELSQATVLELKQLIDALKEAWGVTAAAPVAVAA---APAAGA---AAAPAEEKTEFDVILKEAG-AKKLEVIK 76 (125)
T ss_pred cHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCccccccccc---cCcccc---ccccccccceeEEEEeeCC-cchHHHHH
Confidence 4689999999999999999999999999999876543221 111111 1123579999999999996 79999999
Q ss_pred HHHHhhCCChhHHHHHHhhcchhhhcCCCHHHHHHHHHHHHHcCcEEEe
Q 030925 120 EVKTFTGLGLKESKDLVEKAPAVIKKGVTKEEADKIVEKLKELNAIVVL 168 (169)
Q Consensus 120 ~VR~it~LgLkEAK~lVe~~P~~IKe~vsKeeAE~ik~kLe~aGA~vei 168 (169)
+||++|||||||||+|||++ ++||+|+||+|||+||++|+++||+|+|
T Consensus 77 ~VR~itgLgLkEAK~lVe~a-~~iKe~vsKeeAE~iK~kLe~aGA~Vel 124 (125)
T 2j01_L 77 ELRAITGLGLKEAKDLAEKG-GPVKEGVSKQEAEEIKKKLEAVGAVVEL 124 (125)
T ss_pred HHHHhcCCCHHHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCEEEe
Confidence 99999999999999999999 9999999999999999999999999997
No 3
>2zjq_5 50S ribosomal protein L7/L12; ribosome, ribosomal subunit, thiopeptide antibiotics, complex, translational regulation, molecular switch; 3.30A {Deinococcus radiodurans} SCOP: d.45.1.1
Probab=100.00 E-value=3.8e-40 Score=254.82 Aligned_cols=118 Identities=41% Similarity=0.525 Sum_probs=104.4
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCchhhhhhhcceeeEEEeecCcchhHHHHH
Q 030925 40 KLERISDELLDLTKLERYDFATLLGCKLGLDRFGPVVPAFPSSGPAASGSTSAETKAAEKTAFDVKLEKYDQAAKIKIIK 119 (169)
Q Consensus 40 kv~~Ivd~I~~LtLlE~seLv~~leekfgv~~~a~~~~~~~~~~~aa~~~~~~~~~~~EKt~f~V~L~~~~~~kKi~vIK 119 (169)
++++|+|+|++||++|++||++.|+++|||++.+|++++ +|+++ .++.+|||+|||+|++|+ ++||+|||
T Consensus 4 ~~~~i~e~i~~ltllE~~eLv~~lee~fgv~aaap~a~a----~~~a~-----a~a~eEKteFdV~L~~~~-~~KI~VIK 73 (122)
T 2zjq_5 4 DKQALIDQLGQLTIMELADLIDGLKETWGVTAAVAVSGG----GAGAA-----SPAAEEKTEFDVVLIDAG-ASKINVIK 73 (122)
T ss_pred cHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCccccccc----CCCcc-----cccccccceeEEEEecCC-cchHHHHH
Confidence 468999999999999999999999999999987653321 12111 123479999999999996 79999999
Q ss_pred HHHHhhCCChhHHHHHHhhcchhhhcCCCHHHHHHHHHHHHHcCcEEEe
Q 030925 120 EVKTFTGLGLKESKDLVEKAPAVIKKGVTKEEADKIVEKLKELNAIVVL 168 (169)
Q Consensus 120 ~VR~it~LgLkEAK~lVe~~P~~IKe~vsKeeAE~ik~kLe~aGA~vei 168 (169)
+||++|||||||||+|||++ ++||+|++|+|||+||++|+++||+|+|
T Consensus 74 ~VR~itgLgLkEAK~lVe~a-~~iKe~vsKeeAE~iK~kLe~aGA~Vel 121 (122)
T 2zjq_5 74 EIRGITGLGLKEAKDMSEKG-GVLKEGVAKDEAEKMKAQLEAAGARVEL 121 (122)
T ss_pred HHHHhcCCCHHHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCEEEe
Confidence 99999999999999999999 9999999999999999999999999997
No 4
>1dd3_A 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix-bundl helix- bundle, alpha-beta structure; 2.00A {Thermotoga maritima} SCOP: a.108.1.1 d.45.1.1 PDB: 1dd4_A* 1giy_I 1yl3_I
Probab=100.00 E-value=1.8e-41 Score=263.98 Aligned_cols=122 Identities=45% Similarity=0.616 Sum_probs=105.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCchhhhhhhcceeeEEEeecCcchhHHHHHH
Q 030925 41 LERISDELLDLTKLERYDFATLLGCKLGLDRFGPVVPAFPSSGPAASGSTSAETKAAEKTAFDVKLEKYDQAAKIKIIKE 120 (169)
Q Consensus 41 v~~Ivd~I~~LtLlE~seLv~~leekfgv~~~a~~~~~~~~~~~aa~~~~~~~~~~~EKt~f~V~L~~~~~~kKi~vIK~ 120 (169)
+++|+|+|++||++|++||++.|+++|||++.+|++++ ++|++++ ..+++.+|||+|||+|++|+ ++||+|||+
T Consensus 3 ~~~ive~i~~ltllE~~eLv~~lee~fgv~aaapva~~---~~~~~~~--a~~~a~eEKteFdV~L~~~~-~~KI~VIK~ 76 (128)
T 1dd3_A 3 IDEIIEAIEKLTVSELAELVKKLEDKFGVTAAAPVAVA---AAPVAGA--AAGAAQEEKTEFDVVLKSFG-QNKIQVIKV 76 (128)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHHCHHHHHHHHHH---HHHHHHH--HHHHHHHTTSSEEEEEEECT-TCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCcchhhcc---ccccccc--cccccccccceeeEEEecCC-cchHHHHHH
Confidence 68999999999999999999999999999976543221 0110110 01234679999999999996 799999999
Q ss_pred HHHhhCCChhHHHHHHhhcch---hhhcCCCHHHHHHHHHHHHHcCcEEEe
Q 030925 121 VKTFTGLGLKESKDLVEKAPA---VIKKGVTKEEADKIVEKLKELNAIVVL 168 (169)
Q Consensus 121 VR~it~LgLkEAK~lVe~~P~---~IKe~vsKeeAE~ik~kLe~aGA~vei 168 (169)
||++|||||||||+|||++|+ +||+|+||+|||+||++|+++||+|+|
T Consensus 77 VR~itgLgLKEAK~lVe~aP~~~~~iKe~vsKeeAE~iK~kLe~aGA~Vel 127 (128)
T 1dd3_A 77 VREITGLGLKEAKDLVEKAGSPDAVIKSGVSKEEAEEIKKKLEEAGAEVEL 127 (128)
T ss_dssp HHHHHCCCHHHHHHHHTTTTSTTCEEEEEECHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHhcCCCHHHHHHHHHhCCccchHHHcCCCHHHHHHHHHHHHHcCCEEEe
Confidence 999999999999999999999 999999999999999999999999997
No 5
>3sgf_J 50S ribosomal protein L7/L12; typeii release factor binding with ribosome, ribosome-antibi complex; 3.20A {Escherichia coli} PDB: 2xtg_L 2xux_L 3uos_J 1rqu_A 1rqv_A 2gya_3 2gyc_3 1rqt_A
Probab=100.00 E-value=4.4e-41 Score=259.74 Aligned_cols=117 Identities=36% Similarity=0.529 Sum_probs=27.1
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCchhhhhhhcceeeEEEeecCcchhHHHHH
Q 030925 40 KLERISDELLDLTKLERYDFATLLGCKLGLDRFGPVVPAFPSSGPAASGSTSAETKAAEKTAFDVKLEKYDQAAKIKIIK 119 (169)
Q Consensus 40 kv~~Ivd~I~~LtLlE~seLv~~leekfgv~~~a~~~~~~~~~~~aa~~~~~~~~~~~EKt~f~V~L~~~~~~kKi~vIK 119 (169)
.+++|+|+|++||++|++||++.|+++|||++.++++ +|++ ++++.+|||+|||+|++++ ++||+|||
T Consensus 4 ~~~~ive~i~~ltllE~~eLv~~lee~fgVsaaa~~a------~~a~-----~a~a~eEKteFdV~L~~~g-~~Ki~VIK 71 (121)
T 3sgf_J 4 TKDQIIEAVAAMSVMDVVELISAMEEKFGVSAAAAVA------VAAG-----PVEAAEEKTEFDVILKAAG-ANKVAVIK 71 (121)
T ss_dssp CHHHHHHGGGGCHHHHHHHHHTTTCSCC----------------------------------------------------
T ss_pred cHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCcccccc------cccc-----ccccccccceeEEEEecCc-hhhHHHHH
Confidence 5789999999999999999999999999999765431 1111 1234579999999999995 79999999
Q ss_pred HHHHhhCCChhHHHHHHhhcchhhhcCCCHHHHHHHHHHHHHcCcEEEe
Q 030925 120 EVKTFTGLGLKESKDLVEKAPAVIKKGVTKEEADKIVEKLKELNAIVVL 168 (169)
Q Consensus 120 ~VR~it~LgLkEAK~lVe~~P~~IKe~vsKeeAE~ik~kLe~aGA~vei 168 (169)
+||++|||||||||+|||++|++||+|++|+|||+||++|+++||+|+|
T Consensus 72 ~VR~itgLgLkEAK~lVe~aP~~iKe~vsKeeAE~ik~kLe~aGA~Vel 120 (121)
T 3sgf_J 72 AVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEV 120 (121)
T ss_dssp -------------------------------------------------
T ss_pred HHHHhcCCCHHHHHHHHHhCCHHHHcCCCHHHHHHHHHHHHHcCCEEee
Confidence 9999999999999999999999999999999999999999999999987
No 6
>1ctf_A Ribosomal protein L7/L12; 1.70A {Escherichia coli} SCOP: d.45.1.1 PDB: 1rqs_A 2bcw_B
Probab=99.96 E-value=3.3e-30 Score=184.41 Aligned_cols=71 Identities=51% Similarity=0.723 Sum_probs=65.9
Q ss_pred hhcceeeEEEeecCcchhHHHHHHHHHhhCCChhHHHHHHhhcchhhhcCCCHHHHHHHHHHHHHcCcEEEe
Q 030925 97 AEKTAFDVKLEKYDQAAKIKIIKEVKTFTGLGLKESKDLVEKAPAVIKKGVTKEEADKIVEKLKELNAIVVL 168 (169)
Q Consensus 97 ~EKt~f~V~L~~~~~~kKi~vIK~VR~it~LgLkEAK~lVe~~P~~IKe~vsKeeAE~ik~kLe~aGA~vei 168 (169)
+|||+|||+|++++ ++||+|||+||++|||||+|||+|||++|++||+|++|+|||+||++|+++||+|+|
T Consensus 3 eEkteFdV~L~~~~-~~Ki~vIK~VR~itgLgLkEAK~lVe~~P~~iKe~vsKeeAe~ik~~Le~aGA~Vel 73 (74)
T 1ctf_A 3 EEKTEFDVILKAAG-ANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEV 73 (74)
T ss_dssp ----CEEEEEEECG-GGHHHHHHHHHHHHCCCHHHHHHHHHTCSEEEEEEECHHHHHHHHHHHHHHTCEEEE
T ss_pred cccceeEEEEeeCC-cchhHHHHHHHHHcCCCHHHHHHHHHhCcHHHHcCCCHHHHHHHHHHHHHcCCEEEe
Confidence 68999999999996 799999999999999999999999999999999999999999999999999999997
No 7
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=99.14 E-value=5.5e-11 Score=75.89 Aligned_cols=35 Identities=23% Similarity=0.334 Sum_probs=31.5
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCCC
Q 030925 40 KLERISDELLDLTKLERYDFATLLGCKLGLDRFGP 74 (169)
Q Consensus 40 kv~~Ivd~I~~LtLlE~seLv~~leekfgv~~~a~ 74 (169)
++++|+|+|++||++|++||++.||++|||++.++
T Consensus 2 ~~~~iie~i~~lTvlE~~eLvk~leekfGVsaaa~ 36 (40)
T 1dd4_C 2 TIDEIIEAIEKLTVSELAELVKKLEDKFGVTAAAP 36 (40)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHTCCCSCC-
T ss_pred CHHHHHHHHHhCcHHHHHHHHHHHHHHHCCCcccc
Confidence 47899999999999999999999999999997544
No 8
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=98.57 E-value=4.5e-08 Score=58.87 Aligned_cols=28 Identities=25% Similarity=0.332 Sum_probs=27.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhC
Q 030925 41 LERISDELLDLTKLERYDFATLLGCKLG 68 (169)
Q Consensus 41 v~~Ivd~I~~LtLlE~seLv~~leekfg 68 (169)
+++|+|+|++||++|++||++.|+++||
T Consensus 3 ~~~iie~i~~lTvlEl~eLvk~lEe~fG 30 (30)
T 1zav_U 3 IDEIIEAIEKLTVSELAELVKKLEDKFG 30 (30)
T ss_dssp HHHHHHHHHHSBHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHhC
Confidence 5799999999999999999999999998
No 9
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=83.65 E-value=0.82 Score=31.27 Aligned_cols=27 Identities=15% Similarity=0.294 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhCCChhHHHHHHhhcch
Q 030925 115 IKIIKEVKTFTGLGLKESKDLVEKAPA 141 (169)
Q Consensus 115 i~vIK~VR~it~LgLkEAK~lVe~~P~ 141 (169)
...||++|+.||.|.+|+|+..+.+-.
T Consensus 10 ~~~Vk~LRe~TGag~~dcKkAL~e~~G 36 (64)
T 2cp9_A 10 KELLMKLRRKTGYSFVNCKKALETCGG 36 (64)
T ss_dssp CHHHHHHHHHHCCCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCC
Confidence 378999999999999999997766543
No 10
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=64.61 E-value=5.2 Score=32.62 Aligned_cols=29 Identities=28% Similarity=0.390 Sum_probs=24.4
Q ss_pred HHHHHHHHHhhCCChhHHHHHHhhcchhh
Q 030925 115 IKIIKEVKTFTGLGLKESKDLVEKAPAVI 143 (169)
Q Consensus 115 i~vIK~VR~it~LgLkEAK~lVe~~P~~I 143 (169)
.+.||++|+.||.|..++|+..+..-..+
T Consensus 4 a~~VKeLRe~TGagmmdCKkAL~e~~GD~ 32 (196)
T 1aip_C 4 MELIKKLREATGAGMMDVKRALEDAGWDE 32 (196)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCH
Confidence 57899999999999999999877655443
No 11
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=60.78 E-value=6.2 Score=33.73 Aligned_cols=29 Identities=14% Similarity=0.268 Sum_probs=24.7
Q ss_pred HHHHHHHHHhhCCChhHHHHHHhhcchhh
Q 030925 115 IKIIKEVKTFTGLGLKESKDLVEKAPAVI 143 (169)
Q Consensus 115 i~vIK~VR~it~LgLkEAK~lVe~~P~~I 143 (169)
.+.||++|+.||.|.+++|+..+..-.-+
T Consensus 5 a~~VKeLRe~TGagmmdCKKAL~e~~GD~ 33 (291)
T 1xb2_B 5 KELLMKLRRKTGYSFINCKKALETCGGDL 33 (291)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCH
Confidence 47899999999999999999987765443
No 12
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=53.54 E-value=10 Score=25.30 Aligned_cols=28 Identities=18% Similarity=0.331 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHhhCCChhHHHHHHhhcc
Q 030925 113 AKIKIIKEVKTFTGLGLKESKDLVEKAP 140 (169)
Q Consensus 113 kKi~vIK~VR~it~LgLkEAK~lVe~~P 140 (169)
..+..|+.+|.-.|++|+|.+++++..|
T Consensus 51 ~~l~~I~~l~~~~G~sl~ei~~~l~~~~ 78 (81)
T 2jml_A 51 EAVRRVARLIQEEGLSVSEAIAQVKTEP 78 (81)
T ss_dssp HHHHHHHHHHHHTSTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHccC
Confidence 5677777777667999999999998766
No 13
>1mul_A NS2, HU-2, DNA binding protein HU-alpha; histone-like; HET: DNA; 2.30A {Escherichia coli} SCOP: a.55.1.1 PDB: 2o97_A
Probab=44.81 E-value=12 Score=25.69 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHhhCCChhHHHHHHhhcchhhhcCC
Q 030925 113 AKIKIIKEVKTFTGLGLKESKDLVEKAPAVIKKGV 147 (169)
Q Consensus 113 kKi~vIK~VR~it~LgLkEAK~lVe~~P~~IKe~v 147 (169)
+|-.+|+.|.+-++|.-++++..|+.+-..|.+.+
T Consensus 2 ~k~eli~~ia~~~~ls~~~~~~~l~~~~~~i~~~L 36 (90)
T 1mul_A 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESL 36 (90)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 35688999999999999999999999888776543
No 14
>1b8z_A Protein (histonelike protein HU); thermostable DNA binding protein; 1.60A {Thermotoga maritima} SCOP: a.55.1.1 PDB: 1riy_A
Probab=43.70 E-value=12 Score=25.49 Aligned_cols=35 Identities=20% Similarity=0.271 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHhhCCChhHHHHHHhhcchhhhcCC
Q 030925 113 AKIKIIKEVKTFTGLGLKESKDLVEKAPAVIKKGV 147 (169)
Q Consensus 113 kKi~vIK~VR~it~LgLkEAK~lVe~~P~~IKe~v 147 (169)
+|-.+|+.|.+.++|.-++++..|+.+-..|.+.+
T Consensus 2 tk~eli~~ia~~~~ls~~~~~~~l~~~~~~i~~~L 36 (90)
T 1b8z_A 2 NKKELIDRVAKKAGAKKKDVKLILDTILETITEAL 36 (90)
T ss_dssp CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHH
Confidence 36688999999999999999999999888776543
No 15
>3rhi_A DNA-binding protein HU; structural genomics, center for structural genom infectious diseases, csgid; 2.48A {Bacillus anthracis} SCOP: a.55.1.1 PDB: 1hue_A 1huu_A
Probab=42.93 E-value=11 Score=26.23 Aligned_cols=34 Identities=24% Similarity=0.285 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHhhCCChhHHHHHHhhcchhhhcC
Q 030925 113 AKIKIIKEVKTFTGLGLKESKDLVEKAPAVIKKG 146 (169)
Q Consensus 113 kKi~vIK~VR~it~LgLkEAK~lVe~~P~~IKe~ 146 (169)
+|-.+|+.|.+-+||.-++++..|+.+-..|.+.
T Consensus 5 tk~eLi~~ia~~~~lsk~~~~~~v~~~~~~i~~~ 38 (93)
T 3rhi_A 5 NKTELIKNVAQNAEISQKEATVVVQTVVESITNT 38 (93)
T ss_dssp --CHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHH
Confidence 4668999999999999999999999988877654
No 16
>3c4i_A DNA-binding protein HU homolog; dimerization by four helix bundle interaction, DNA condensat binding; 2.04A {Mycobacterium tuberculosis}
Probab=41.68 E-value=14 Score=25.92 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHhhCCChhHHHHHHhhcchhhhcCC
Q 030925 113 AKIKIIKEVKTFTGLGLKESKDLVEKAPAVIKKGV 147 (169)
Q Consensus 113 kKi~vIK~VR~it~LgLkEAK~lVe~~P~~IKe~v 147 (169)
+|-.+|+.|.+-++|.-++++..|+.+-..|.+.+
T Consensus 2 tk~eLi~~ia~~~~lsk~~~~~~l~~~~~~i~~~L 36 (99)
T 3c4i_A 2 NKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAV 36 (99)
T ss_dssp BHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 46688999999999999999999999888776643
No 17
>1p71_A DNA-binding protein HU; protein-DNA complex, DNA bending, DNA binding protein-DN; 1.90A {Anabaena SP} SCOP: a.55.1.1 PDB: 1p51_A 1p78_A
Probab=41.42 E-value=14 Score=25.50 Aligned_cols=35 Identities=17% Similarity=0.208 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHhhCCChhHHHHHHhhcchhhhcCC
Q 030925 113 AKIKIIKEVKTFTGLGLKESKDLVEKAPAVIKKGV 147 (169)
Q Consensus 113 kKi~vIK~VR~it~LgLkEAK~lVe~~P~~IKe~v 147 (169)
+|-.+|+.|.+.++|.-++++..|+.+-..|.+.+
T Consensus 2 ~k~eli~~ia~~~~ls~~~~~~~l~~~~~~i~~~L 36 (94)
T 1p71_A 2 NKGELVDAVAEKASVTKKQADAVLTAALETIIEAV 36 (94)
T ss_dssp BHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 46688999999999999999999999887776543
No 18
>2o97_B NS1, HU-1, DNA-binding protein HU-beta; heterodimer, DNA structure, DNA supercoiling, E DNA binding protein; 2.45A {Escherichia coli} SCOP: a.55.1.1
Probab=40.95 E-value=13 Score=25.52 Aligned_cols=34 Identities=9% Similarity=0.159 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHhhCCChhHHHHHHhhcchhhhcC
Q 030925 113 AKIKIIKEVKTFTGLGLKESKDLVEKAPAVIKKG 146 (169)
Q Consensus 113 kKi~vIK~VR~it~LgLkEAK~lVe~~P~~IKe~ 146 (169)
+|-.+|+.|.+-++|.-++++..|+.+-..|.+.
T Consensus 2 ~k~eli~~ia~~~~ls~~~~~~~l~~~~~~i~~~ 35 (90)
T 2o97_B 2 NKSQLIDKIAAGADISKAAAGRALDAIIASVTES 35 (90)
T ss_dssp BHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 4668899999999999999999999988777654
No 19
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=40.71 E-value=30 Score=23.44 Aligned_cols=25 Identities=20% Similarity=0.534 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHhhCCChhHHHHHHhh
Q 030925 113 AKIKIIKEVKTFTGLGLKESKDLVEK 138 (169)
Q Consensus 113 kKi~vIK~VR~it~LgLkEAK~lVe~ 138 (169)
.++..|+..|. +|++|.|-|++++.
T Consensus 4 ~rL~~I~~lr~-lGfsL~eIk~~l~~ 28 (99)
T 1q08_A 4 QRLKFIRHARQ-LGFSLESIRELLSI 28 (99)
T ss_dssp HHHHHHHHHHH-TTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 45677777775 59999999999974
No 20
>1owf_A IHF-alpha, integration HOST factor alpha-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ihf_A 1ouz_A 1owg_A 2ht0_A
Probab=37.66 E-value=17 Score=25.37 Aligned_cols=35 Identities=23% Similarity=0.299 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHhhCCChhHHHHHHhhcchhhhcCC
Q 030925 113 AKIKIIKEVKTFTGLGLKESKDLVEKAPAVIKKGV 147 (169)
Q Consensus 113 kKi~vIK~VR~it~LgLkEAK~lVe~~P~~IKe~v 147 (169)
+|-.+|+.|.+.++|.-++++..|+.+-..|.+.+
T Consensus 4 ~k~eli~~ia~~~~ls~~~~~~vl~~~~~~i~~~L 38 (99)
T 1owf_A 4 TKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRAL 38 (99)
T ss_dssp CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 46689999999999999999999999888776543
No 21
>1exe_A Transcription factor 1; beta ribbon ARMS, DNA-binding, DNA-bending protein; NMR {Bacillus phage SPO1} SCOP: a.55.1.1 PDB: 1wtu_A
Probab=35.39 E-value=13 Score=26.07 Aligned_cols=35 Identities=23% Similarity=0.310 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHhhCCChhHHHHHHhhcchhhhcCC
Q 030925 113 AKIKIIKEVKTFTGLGLKESKDLVEKAPAVIKKGV 147 (169)
Q Consensus 113 kKi~vIK~VR~it~LgLkEAK~lVe~~P~~IKe~v 147 (169)
+|-.+|+.|.+.++|.-++++..|+.+-..|.+.+
T Consensus 2 tk~eLi~~ia~~~~lsk~~~~~~l~~~~~~i~~~L 36 (99)
T 1exe_A 2 NKTELIKAIAQDTGLTQVSVSKMLASFEKIITETV 36 (99)
T ss_dssp CTTHHHHHHHHHHCSCCTTHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 35688999999999999999999999988877654
No 22
>1owf_B IHF-beta, integration HOST factor beta-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ouz_B 2ht0_B 1ihf_B 1owg_B
Probab=33.99 E-value=22 Score=24.48 Aligned_cols=34 Identities=18% Similarity=0.215 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHh-hCCChhHHHHHHhhcchhhhcC
Q 030925 113 AKIKIIKEVKTF-TGLGLKESKDLVEKAPAVIKKG 146 (169)
Q Consensus 113 kKi~vIK~VR~i-t~LgLkEAK~lVe~~P~~IKe~ 146 (169)
+|-.+|+.|.+. ++|.-++++..|+.+-..|.+.
T Consensus 2 tk~eli~~ia~~~~~ls~~~~~~~l~~~~~~i~~~ 36 (94)
T 1owf_B 2 TKSELIERLATQQSHIPAKTVEDAVKEMLEHMAST 36 (94)
T ss_dssp BHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 466889999988 7999999999999988777654
No 23
>2w9r_A YLJA, ATP-dependent CLP protease adapter protein CLPS; chaperone, adaptor protein, DNA condensation, iron, CLPS, CLPA, cytoplasm, N-END RULE; HET: DNA; 1.70A {Escherichia coli} PDB: 2wa9_A 1mbx_C* 1mbv_B 1mbu_C* 1r6o_C* 1r6q_C* 2wa8_A 3o2h_A* 3o2b_A* 1mg9_A* 1lzw_A*
Probab=31.68 E-value=1.4e+02 Score=21.61 Aligned_cols=72 Identities=17% Similarity=0.188 Sum_probs=54.2
Q ss_pred hhcceeeEEEeecCcchhHHHHHHHHHhhCCChhHHHHHHhhcch----hhhcCCCHHHHHHHHHHHHH------cCcEE
Q 030925 97 AEKTAFDVKLEKYDQAAKIKIIKEVKTFTGLGLKESKDLVEKAPA----VIKKGVTKEEADKIVEKLKE------LNAIV 166 (169)
Q Consensus 97 ~EKt~f~V~L~~~~~~kKi~vIK~VR~it~LgLkEAK~lVe~~P~----~IKe~vsKeeAE~ik~kLe~------aGA~v 166 (169)
+....|.|+|-+-|-.--=-||..+..+.|++..+|-++.-.+=. ++.. -++|.||....++.. .|-.+
T Consensus 23 ~~p~~y~ViL~NDd~ttmefVv~vL~~~f~~~~~~A~~iml~VH~~G~avv~~-~~~e~AE~k~~~l~~~ar~~~~pL~~ 101 (108)
T 2w9r_A 23 KPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGV-FTAEVAETKVAMVNKYARENEHPLLC 101 (108)
T ss_dssp CCCCEEEEEEECCSSSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSEEEEEE-EEHHHHHHHHHHHHHHHHHTTCCCEE
T ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHhhCCCEEEEE-eCHHHHHHHHHHHHHHHHhCCCCcEE
Confidence 345669999987554556679999999999999999998765432 3444 499999999999985 45555
Q ss_pred EeC
Q 030925 167 VLE 169 (169)
Q Consensus 167 eiE 169 (169)
.||
T Consensus 102 t~E 104 (108)
T 2w9r_A 102 TLE 104 (108)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 24
>1ctf_A Ribosomal protein L7/L12; 1.70A {Escherichia coli} SCOP: d.45.1.1 PDB: 1rqs_A 2bcw_B
Probab=30.92 E-value=48 Score=23.10 Aligned_cols=23 Identities=13% Similarity=0.016 Sum_probs=20.4
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHH
Q 030925 39 QKLERISDELLDLTKLERYDFAT 61 (169)
Q Consensus 39 ~kv~~Ivd~I~~LtLlE~seLv~ 61 (169)
-+|.+.+..|-+|.|.|+.+||+
T Consensus 20 i~vIK~VR~itgLgLkEAK~lVe 42 (74)
T 1ctf_A 20 VAVIKAVRGATGLGLKEAKDLVE 42 (74)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHH
Confidence 35678899999999999999997
No 25
>2p63_A Cell division control protein 4; ubiquitination, helix bundle, SCF complex, cell cycle; 2.67A {Saccharomyces cerevisiae}
Probab=30.49 E-value=54 Score=21.81 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=23.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 030925 41 LERISDELLDLTKLERYDFATLLGCKL 67 (169)
Q Consensus 41 v~~Ivd~I~~LtLlE~seLv~~leekf 67 (169)
-.-|..-+++|+.-|++||+..|++-+
T Consensus 27 knLiF~Lvs~m~RseLSDl~TlikDNL 53 (56)
T 2p63_A 27 KNLLFRLVANMDRSELSDLGTLIKDNL 53 (56)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhh
Confidence 445777889999999999999999865
No 26
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=27.82 E-value=51 Score=25.94 Aligned_cols=28 Identities=29% Similarity=0.378 Sum_probs=22.9
Q ss_pred cchhHHHHHHHHHhhCCChhHHHHHHhhc
Q 030925 111 QAAKIKIIKEVKTFTGLGLKESKDLVEKA 139 (169)
Q Consensus 111 ~~kKi~vIK~VR~it~LgLkEAK~lVe~~ 139 (169)
.-.++..|+.+|+. |++|+|.|++++..
T Consensus 49 ~~~~l~~i~~l~~~-g~~l~~i~~~~~~~ 76 (278)
T 1r8e_A 49 QLIHLDLIKSLKYI-GTPLEEMKKAQDLE 76 (278)
T ss_dssp GGGHHHHHHHHHHT-TCCHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHC-CCCHHHHHHHHHhC
Confidence 34778888888765 99999999999865
No 27
>2np2_A HBB; protein-DNA complex, DNA-binding protein, DNA-bending protein, dnabii family, HU/IHF family, DNA binding protein/DNA complex; 3.02A {Borrelia burgdorferi}
Probab=26.36 E-value=27 Score=24.79 Aligned_cols=34 Identities=15% Similarity=0.136 Sum_probs=29.1
Q ss_pred hhHHHHHHHH-----HhhCCChhHHHHHHhhcchhhhcC
Q 030925 113 AKIKIIKEVK-----TFTGLGLKESKDLVEKAPAVIKKG 146 (169)
Q Consensus 113 kKi~vIK~VR-----~it~LgLkEAK~lVe~~P~~IKe~ 146 (169)
+|-.+|+.|. +.++|.-++++..|+.+-..|.+.
T Consensus 10 tk~eLi~~ia~~~~~~~~~lsk~~~~~vl~~~~~~i~~~ 48 (108)
T 2np2_A 10 TKSDIVDQIALNIKNNNLKLEKKYIRLVIDAFFEELKSN 48 (108)
T ss_dssp EHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhhhhhhcCCCHHHHHHHHHHHHHHHHHH
Confidence 5778999998 789999999999999988777654
No 28
>1l0i_A Acyl carrier protein; acyl chain binding, fatty acid biosynt lipid transport; HET: PSR; 1.20A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ny7_B* 2fhs_C 1l0h_A* 1acp_A 1t8k_A 2fac_A* 2fad_A* 2fae_A* 2k92_A 2k93_A 2k94_A 2l0q_A
Probab=25.67 E-value=64 Score=20.30 Aligned_cols=22 Identities=9% Similarity=0.152 Sum_probs=19.2
Q ss_pred cCCHHHHHHHHHHHHHHhCCCC
Q 030925 50 DLTKLERYDFATLLGCKLGLDR 71 (169)
Q Consensus 50 ~LtLlE~seLv~~leekfgv~~ 71 (169)
.++=+.+.+|+..|+++||++-
T Consensus 34 G~DSl~~~el~~~le~~fgi~i 55 (78)
T 1l0i_A 34 GADSLDTVELVMALEEEFDTEI 55 (78)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHHhCCCC
Confidence 5677889999999999999973
No 29
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=24.71 E-value=77 Score=23.53 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHhhCCChhHHHHHHhh
Q 030925 113 AKIKIIKEVKTFTGLGLKESKDLVEK 138 (169)
Q Consensus 113 kKi~vIK~VR~it~LgLkEAK~lVe~ 138 (169)
.++..|+.+|+ .|++|+|.|++++.
T Consensus 61 ~~l~~I~~lr~-~G~sL~eIk~~l~~ 85 (148)
T 3gpv_A 61 KYLEMILCLKN-TGMPIQKIKQFIDW 85 (148)
T ss_dssp HHHHHHHHHHT-TTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHh
Confidence 56666666654 79999999999984
No 30
>1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus subtilis} SCOP: a.28.1.1 PDB: 2x2b_A* 1hy8_A
Probab=24.67 E-value=68 Score=20.35 Aligned_cols=22 Identities=14% Similarity=0.244 Sum_probs=19.6
Q ss_pred hcCCHHHHHHHHHHHHHHhCCC
Q 030925 49 LDLTKLERYDFATLLGCKLGLD 70 (169)
Q Consensus 49 ~~LtLlE~seLv~~leekfgv~ 70 (169)
..+.=+.+.+|+..|+++||+.
T Consensus 37 lG~DSl~~vel~~~le~~fgi~ 58 (81)
T 1f80_D 37 LGADXLDVVELVMELEDEFDME 58 (81)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCC
T ss_pred cCCcHHHHHHHHHHHHHHhCCc
Confidence 4677789999999999999997
No 31
>3dnj_A ATP-dependent CLP protease adapter protein CLPS; adaptor, protein-peptide complex, peptide binding protein; 1.15A {Caulobacter vibrioides} SCOP: d.45.1.2 PDB: 3g19_A 3gq0_A 3gq1_A 3gw1_A 3g1b_A 3g3p_A*
Probab=24.55 E-value=1.8e+02 Score=20.25 Aligned_cols=61 Identities=13% Similarity=0.099 Sum_probs=45.8
Q ss_pred cceeeEEEeecCcchhHHHHHHHHHhhCCChhHHHHHHhhcch----hhhcCCCHHHHHHHHHHHH
Q 030925 99 KTAFDVKLEKYDQAAKIKIIKEVKTFTGLGLKESKDLVEKAPA----VIKKGVTKEEADKIVEKLK 160 (169)
Q Consensus 99 Kt~f~V~L~~~~~~kKi~vIK~VR~it~LgLkEAK~lVe~~P~----~IKe~vsKeeAE~ik~kLe 160 (169)
...|.|+|-+-|-.--==||..++.+.|++..+|-++.-.+=. ++..+ ++|.||--..++.
T Consensus 4 p~~y~Vil~NDd~~tme~Vv~vL~~vf~~~~e~A~~iml~VH~~G~avv~~~-~~e~AE~k~~q~~ 68 (85)
T 3dnj_A 4 PSLYRVLILNDDYTPMEFVVYVLERFFNKSREDATRIMLHVHQNGVGVCGVY-TYEVAETKVAQVI 68 (85)
T ss_dssp --CEEEEEECCSSSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSEEEEEEE-CHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCcEEEEEe-cHHHHHHHHHHHH
Confidence 4568899976554455678999999999999999999875432 44444 9999999888873
No 32
>2lol_A ACP, acyl carrier protein; lipid transport; NMR {Rickettsia prowazekii str}
Probab=24.40 E-value=72 Score=20.23 Aligned_cols=23 Identities=17% Similarity=0.377 Sum_probs=20.1
Q ss_pred hcCCHHHHHHHHHHHHHHhCCCC
Q 030925 49 LDLTKLERYDFATLLGCKLGLDR 71 (169)
Q Consensus 49 ~~LtLlE~seLv~~leekfgv~~ 71 (169)
..+.=+.+.+|+..|+++||+.-
T Consensus 36 lG~DSl~~~el~~~le~~fgi~i 58 (81)
T 2lol_A 36 LKADSLDTVELMMAIEVEYGIDI 58 (81)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCCC
T ss_pred cCCcHHHHHHHHHHHHHHHCCCC
Confidence 46788889999999999999973
No 33
>3a1y_A 50S ribosomal protein P1 (L12P); stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=23.76 E-value=33 Score=22.41 Aligned_cols=16 Identities=6% Similarity=0.030 Sum_probs=13.9
Q ss_pred HHHHHHHHHHcCcEEE
Q 030925 152 ADKIVEKLKELNAIVV 167 (169)
Q Consensus 152 AE~ik~kLe~aGA~ve 167 (169)
+++|++.|+++|.+|+
T Consensus 19 ~~~I~~il~aaGveve 34 (58)
T 3a1y_A 19 EENLKAVLQAAGVEPE 34 (58)
T ss_dssp HHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHcCCCcc
Confidence 6789999999998874
No 34
>2amw_A Hypothetical protein NE2163; all helical protein, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=23.54 E-value=56 Score=21.20 Aligned_cols=20 Identities=10% Similarity=0.057 Sum_probs=17.6
Q ss_pred CHHHHHHHHHHHHHHhCCCC
Q 030925 52 TKLERYDFATLLGCKLGLDR 71 (169)
Q Consensus 52 tLlE~seLv~~leekfgv~~ 71 (169)
.=+...+|+-.||++|||.-
T Consensus 38 DSl~~~elv~~lE~~fgi~i 57 (83)
T 2amw_A 38 DSMAVVNVITALEEYFDFSV 57 (83)
T ss_dssp THHHHHHHHHHHHHHTTCCC
T ss_pred CHHHHHHHHHHHHHHhCCee
Confidence 66788899999999999974
No 35
>1in0_A YAJQ protein, HI1034; alpha and beta sandwich, structural genomics, structure 2 function project, S2F, unknown function; 2.14A {Haemophilus influenzae} SCOP: d.58.49.1 d.58.49.1
Probab=23.51 E-value=41 Score=26.77 Aligned_cols=63 Identities=17% Similarity=0.226 Sum_probs=42.1
Q ss_pred eEEEeecCcchhHHHHHHH-HHh---hCCChhHHH--HHHh-------hcchhhhcCCCHHHHHHHHHHHHHcCcEEE
Q 030925 103 DVKLEKYDQAAKIKIIKEV-KTF---TGLGLKESK--DLVE-------KAPAVIKKGVTKEEADKIVEKLKELNAIVV 167 (169)
Q Consensus 103 ~V~L~~~~~~kKi~vIK~V-R~i---t~LgLkEAK--~lVe-------~~P~~IKe~vsKeeAE~ik~kLe~aGA~ve 167 (169)
.++|..- ++.|+.-+..| +.- -|+.|+--. + ++ .....|++|++.|.|.+|.+.+.+.+-+|.
T Consensus 47 ~i~l~a~-~d~kl~qv~DiL~~kl~KRgid~k~ld~~~-~~~~sG~~vrq~~~lk~GI~~e~AKkIvK~IKdsklKVq 122 (163)
T 1in0_A 47 TIKITTE-SDFQLEQLIEILIGSCIKRGIEHSSLDIPA-ESEHHGKLYSKEIKLKQGIETEMAKKITKLVKDSKIKVQ 122 (163)
T ss_dssp EEEEEES-CHHHHHHHHHHHHHHHHHTTCCGGGEECCS-SCEEETTEEEEEEEECCSCCHHHHHHHHHHHHHHTCSEE
T ss_pred EEEEEeC-CHHHHHHHHHHHHHHHHHcCCCchhcccCC-CccccCCEEEEEEEeecccCHHHHHHHHHHHHhcCCcce
Confidence 5778765 47887776644 532 366655211 0 01 112368999999999999999999988764
No 36
>3gzm_A Acyl carrier protein; helix bundle, phosphopantetheine, fatty acid biosynthesis, L synthesis, transit peptide, biosynthetic protein; HET: PNS; 1.80A {Plasmodium falciparum} SCOP: a.28.1.0 PDB: 3gzl_A* 2fq0_A* 2fq2_A*
Probab=23.49 E-value=74 Score=20.42 Aligned_cols=22 Identities=14% Similarity=0.149 Sum_probs=19.6
Q ss_pred cCCHHHHHHHHHHHHHHhCCCC
Q 030925 50 DLTKLERYDFATLLGCKLGLDR 71 (169)
Q Consensus 50 ~LtLlE~seLv~~leekfgv~~ 71 (169)
++.=+.+.+|+..|+++|||.-
T Consensus 36 g~DSl~~vel~~~le~~fgi~i 57 (81)
T 3gzm_A 36 GADSLDLVELIMALEEKFNVTI 57 (81)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHHHCCCc
Confidence 6777889999999999999973
No 37
>1x3o_A Acyl carrier protein; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 1.50A {Thermus thermophilus}
Probab=23.28 E-value=79 Score=19.77 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=18.5
Q ss_pred cCCHHHHHHHHHHHHHHhCCC
Q 030925 50 DLTKLERYDFATLLGCKLGLD 70 (169)
Q Consensus 50 ~LtLlE~seLv~~leekfgv~ 70 (169)
.+.=+.+.+|+..|+++||+.
T Consensus 36 G~DSl~~~~l~~~le~~fgi~ 56 (80)
T 1x3o_A 36 GADSLDTVELIMGLEDEFGLE 56 (80)
T ss_dssp CCCHHHHHHHHHHHHHHHCCC
T ss_pred CccHHHHHHHHHHHHHHHCCC
Confidence 566788999999999999997
No 38
>2j01_L 50S ribosomal protein L7; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_L 3i8i_I
Probab=22.68 E-value=86 Score=23.76 Aligned_cols=28 Identities=14% Similarity=-0.007 Sum_probs=23.9
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 030925 39 QKLERISDELLDLTKLERYDFATLLGCKL 67 (169)
Q Consensus 39 ~kv~~Ivd~I~~LtLlE~seLv~~leekf 67 (169)
-+|.+.|..|-+|.|.|+.+||+.. ..+
T Consensus 72 I~VIK~VR~itgLgLkEAK~lVe~a-~~i 99 (125)
T 2j01_L 72 LEVIKELRAITGLGLKEAKDLAEKG-GPV 99 (125)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHH-HHH
Confidence 3567889999999999999999988 655
No 39
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=22.39 E-value=93 Score=23.01 Aligned_cols=25 Identities=16% Similarity=0.302 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHhhCCChhHHHHHHhh
Q 030925 113 AKIKIIKEVKTFTGLGLKESKDLVEK 138 (169)
Q Consensus 113 kKi~vIK~VR~it~LgLkEAK~lVe~ 138 (169)
.++..|+.+|+ .|++|.|.|++++.
T Consensus 47 ~~l~~I~~lr~-~G~sL~eIk~~l~~ 71 (142)
T 3gp4_A 47 RWILFTRQMRR-AGLSIEALIDYLAL 71 (142)
T ss_dssp HHHHHHHHHHH-TTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHH
Confidence 56677777764 69999999999974
No 40
>2zjq_5 50S ribosomal protein L7/L12; ribosome, ribosomal subunit, thiopeptide antibiotics, complex, translational regulation, molecular switch; 3.30A {Deinococcus radiodurans} SCOP: d.45.1.1
Probab=22.21 E-value=91 Score=23.55 Aligned_cols=28 Identities=14% Similarity=-0.028 Sum_probs=23.8
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 030925 39 QKLERISDELLDLTKLERYDFATLLGCKL 67 (169)
Q Consensus 39 ~kv~~Ivd~I~~LtLlE~seLv~~leekf 67 (169)
-+|.+.|..|-+|.|.|+.+||+.. ..+
T Consensus 69 I~VIK~VR~itgLgLkEAK~lVe~a-~~i 96 (122)
T 2zjq_5 69 INVIKEIRGITGLGLKEAKDMSEKG-GVL 96 (122)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHH-HHH
Confidence 3567889999999999999999988 554
No 41
>2ehs_A ACP, acyl carrier protein; lipid transport, structural genomics, NPPSFA, national proje protein structural and functional analyses; 1.30A {Aquifex aeolicus} PDB: 2eht_A
Probab=22.19 E-value=84 Score=19.41 Aligned_cols=21 Identities=10% Similarity=0.290 Sum_probs=18.6
Q ss_pred cCCHHHHHHHHHHHHHHhCCC
Q 030925 50 DLTKLERYDFATLLGCKLGLD 70 (169)
Q Consensus 50 ~LtLlE~seLv~~leekfgv~ 70 (169)
.+.=+.+.+|+..|+++||++
T Consensus 32 G~DSl~~~~l~~~le~~~gi~ 52 (77)
T 2ehs_A 32 GADSLDVVELIMAFEEEFGIE 52 (77)
T ss_dssp CCCHHHHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHHhCCc
Confidence 567788999999999999997
No 42
>2qnw_A Acyl carrier protein; malaria, SGC, structural genomics CONS fatty acid biosynthesis, lipid synthesis, phosphopantethein transit peptide; 1.90A {Toxoplasma gondii}
Probab=21.90 E-value=83 Score=20.15 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=19.4
Q ss_pred hcCCHHHHHHHHHHHHHHhCCC
Q 030925 49 LDLTKLERYDFATLLGCKLGLD 70 (169)
Q Consensus 49 ~~LtLlE~seLv~~leekfgv~ 70 (169)
..+.=+.+.+|+..|+++||+.
T Consensus 37 lG~DSl~~vel~~~le~~fgi~ 58 (82)
T 2qnw_A 37 LDADSLDSVELVMAFEEKFGVS 58 (82)
T ss_dssp SCCCHHHHHHHHHHHHHHHTCC
T ss_pred cCCcHHHHHHHHHHHHHHHCCc
Confidence 4577788999999999999997
No 43
>2jq4_A AGR_C_4658P, hypothetical protein ATU2571; ATC2521, unknown function, ATC, S genomics, PSI-2, protein structure initiative; NMR {Agrobacterium tumefaciens} SCOP: a.28.1.1
Probab=21.77 E-value=80 Score=21.99 Aligned_cols=21 Identities=5% Similarity=0.146 Sum_probs=18.3
Q ss_pred cCCHHHHHHHHHHHHHHhCCC
Q 030925 50 DLTKLERYDFATLLGCKLGLD 70 (169)
Q Consensus 50 ~LtLlE~seLv~~leekfgv~ 70 (169)
.+.=+.+.+|+-.||++|||.
T Consensus 54 GlDSL~~veLv~~lE~~fgI~ 74 (105)
T 2jq4_A 54 GLSSFASVQLMLGIEEAFDIE 74 (105)
T ss_dssp TCCHHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHHHHHCCC
Confidence 356688999999999999997
No 44
>2l4b_A Acyl carrier protein; infectious disease, human granulocytic anaplasmosis, ssgcid, structural genomics; NMR {Anaplasma phagocytophilum}
Probab=21.48 E-value=84 Score=20.47 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=18.6
Q ss_pred cCCHHHHHHHHHHHHHHhCCC
Q 030925 50 DLTKLERYDFATLLGCKLGLD 70 (169)
Q Consensus 50 ~LtLlE~seLv~~leekfgv~ 70 (169)
.+.=+.+.+|+..|+++|||.
T Consensus 42 glDSl~~vel~~~lE~~fgi~ 62 (88)
T 2l4b_A 42 NLDSLDFVDLIMSLEERFSLE 62 (88)
T ss_dssp TCCHHHHHHHHHHHHHHTTCC
T ss_pred CCcHHHHHHHHHHHHHHHCCC
Confidence 566788999999999999997
No 45
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=21.07 E-value=87 Score=23.49 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHhhCCChhHHHHHHhhc
Q 030925 113 AKIKIIKEVKTFTGLGLKESKDLVEKA 139 (169)
Q Consensus 113 kKi~vIK~VR~it~LgLkEAK~lVe~~ 139 (169)
.++..|+.+|+ .|++|.|.|++++..
T Consensus 55 ~~l~~I~~lr~-~G~sl~eI~~~l~~~ 80 (154)
T 2zhg_A 55 RYVAIIKIAQR-IGIPLATIGEAFGVL 80 (154)
T ss_dssp HHHHHHHHHHH-HTCCHHHHHHHHCC-
T ss_pred HHHHHHHHHHH-CCCCHHHHHHHHHhc
Confidence 56667777764 599999999999854
No 46
>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi}
Probab=21.02 E-value=86 Score=20.10 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=19.9
Q ss_pred hcCCHHHHHHHHHHHHHHhCCCC
Q 030925 49 LDLTKLERYDFATLLGCKLGLDR 71 (169)
Q Consensus 49 ~~LtLlE~seLv~~leekfgv~~ 71 (169)
..+.=+.+.+|+..|+++||+.-
T Consensus 39 lG~DSl~~vel~~~le~~fgi~i 61 (84)
T 2kwl_A 39 LNADSLDIYELLYLLEEAFDDKI 61 (84)
T ss_dssp SSSCHHHHHHHHHHHHHHHTCCT
T ss_pred cCCCHHHHHHHHHHHHHHHCCCc
Confidence 46777889999999999999973
No 47
>3fxd_A Protein ICMQ; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila} PDB: 3fxe_A
Probab=20.69 E-value=62 Score=21.63 Aligned_cols=19 Identities=21% Similarity=0.476 Sum_probs=15.2
Q ss_pred hcCCCHHHHHHHHHHHHHc
Q 030925 144 KKGVTKEEADKIVEKLKEL 162 (169)
Q Consensus 144 Ke~vsKeeAE~ik~kLe~a 162 (169)
|+.++.|++++|.+.|.++
T Consensus 2 kd~lt~eq~~aILkaLdea 20 (57)
T 3fxd_A 2 KDQLSDEQKETILKALNDA 20 (57)
T ss_dssp --CCCHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHH
Confidence 6789999999999999765
Done!