Query 030926
Match_columns 169
No_of_seqs 117 out of 1136
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 10:17:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030926.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030926hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ftc_E L12MT, MRP-L12, 39S rib 100.0 6.5E-45 2.2E-49 285.6 14.3 131 39-169 1-137 (137)
2 2j01_L 50S ribosomal protein L 100.0 9.7E-41 3.3E-45 258.5 13.8 121 40-168 4-124 (125)
3 2zjq_5 50S ribosomal protein L 100.0 3.6E-40 1.2E-44 254.4 14.0 118 40-168 4-121 (122)
4 1dd3_A 50S ribosomal protein L 100.0 1.1E-41 3.8E-46 264.6 2.8 122 41-168 3-127 (128)
5 3sgf_J 50S ribosomal protein L 100.0 2.3E-41 7.7E-46 260.7 -0.6 117 40-168 4-120 (121)
6 1ctf_A Ribosomal protein L7/L1 100.0 2.4E-30 8E-35 184.5 7.1 71 97-168 3-73 (74)
7 1dd4_C 50S ribosomal protein L 99.1 5.7E-11 2E-15 75.5 5.1 35 40-74 2-36 (40)
8 1zav_U 50S ribosomal protein L 98.6 3.3E-08 1.1E-12 59.2 3.6 28 41-68 3-30 (30)
9 2cp9_A EF-TS, EF-TSMT, elongat 83.3 0.95 3.3E-05 30.8 3.1 26 115-140 10-35 (64)
10 1aip_C EF-TS, elongation facto 64.3 5.2 0.00018 32.5 3.4 27 115-141 4-30 (196)
11 1xb2_B EF-TS, elongation facto 60.7 6.2 0.00021 33.6 3.4 27 115-141 5-31 (291)
12 2jml_A DNA binding domain/tran 51.6 11 0.00039 25.0 2.9 29 112-140 50-78 (81)
13 1mul_A NS2, HU-2, DNA binding 43.4 12 0.0004 25.7 1.9 34 113-146 2-35 (90)
14 3rhi_A DNA-binding protein HU; 41.6 10 0.00036 26.2 1.5 34 113-146 5-38 (93)
15 3c4i_A DNA-binding protein HU 40.5 14 0.00046 25.9 1.9 34 113-146 2-35 (99)
16 1p71_A DNA-binding protein HU; 40.1 14 0.00048 25.5 1.9 34 113-146 2-35 (94)
17 1b8z_A Protein (histonelike pr 40.0 22 0.00076 24.1 3.0 34 113-146 2-35 (90)
18 2o97_B NS1, HU-1, DNA-binding 37.3 23 0.00079 24.2 2.7 34 113-146 2-35 (90)
19 1owf_A IHF-alpha, integration 36.5 17 0.00058 25.4 1.9 34 113-146 4-37 (99)
20 1exe_A Transcription factor 1; 36.4 6.4 0.00022 27.7 -0.3 35 113-147 2-36 (99)
21 1q08_A Zn(II)-responsive regul 34.9 32 0.0011 23.2 3.1 25 113-138 4-28 (99)
22 3dnj_A ATP-dependent CLP prote 33.6 1.2E+02 0.0041 21.1 6.1 60 99-159 4-67 (85)
23 2p63_A Cell division control p 32.9 46 0.0016 22.0 3.4 26 42-67 28-53 (56)
24 1owf_B IHF-beta, integration H 32.6 21 0.00073 24.5 1.9 34 113-146 2-36 (94)
25 2w9r_A YLJA, ATP-dependent CLP 30.5 1.4E+02 0.0047 21.7 6.1 72 97-169 23-104 (108)
26 3a1y_A 50S ribosomal protein P 29.2 23 0.00078 23.1 1.5 16 152-167 19-34 (58)
27 1r8e_A Multidrug-efflux transp 26.8 50 0.0017 26.0 3.4 28 111-139 49-76 (278)
28 2np2_A HBB; protein-DNA comple 25.5 27 0.00091 24.8 1.4 33 113-145 10-47 (108)
29 1in0_A YAJQ protein, HI1034; a 24.6 40 0.0014 26.7 2.4 64 103-167 47-122 (163)
30 3fxd_A Protein ICMQ; helix bun 24.5 47 0.0016 22.1 2.3 19 144-162 2-20 (57)
31 2zkr_l 60S ribosomal protein L 24.5 47 0.0016 25.2 2.7 15 154-168 132-146 (148)
32 1ctf_A Ribosomal protein L7/L1 24.3 76 0.0026 22.0 3.5 23 39-61 20-42 (74)
33 3j21_L 50S ribosomal protein L 23.4 50 0.0017 25.2 2.7 26 139-168 120-146 (147)
34 1l0i_A Acyl carrier protein; a 23.4 74 0.0025 20.0 3.2 22 50-71 34-55 (78)
35 1f80_D Acyl carrier protein; t 23.1 76 0.0026 20.1 3.2 23 49-71 37-59 (81)
36 3gpv_A Transcriptional regulat 22.8 80 0.0027 23.4 3.7 26 112-138 60-85 (148)
37 2lbf_A 60S acidic ribosomal pr 22.3 30 0.001 23.3 1.1 16 152-167 25-40 (69)
38 2e6f_A Dihydroorotate dehydrog 22.2 1E+02 0.0036 24.9 4.6 40 115-166 149-191 (314)
39 2lol_A ACP, acyl carrier prote 21.9 83 0.0028 19.9 3.2 23 49-71 36-58 (81)
40 3gzm_A Acyl carrier protein; h 21.7 83 0.0028 20.1 3.2 22 50-71 36-57 (81)
41 2amw_A Hypothetical protein NE 21.6 65 0.0022 20.9 2.7 20 52-71 38-57 (83)
42 1x3o_A Acyl carrier protein; s 20.8 91 0.0031 19.4 3.2 21 50-70 36-56 (80)
43 2lbf_B 60S acidic ribosomal pr 20.7 36 0.0012 23.1 1.2 16 152-167 21-36 (70)
44 2qnw_A Acyl carrier protein; m 20.3 92 0.0031 19.9 3.2 23 49-71 37-59 (82)
45 2ehs_A ACP, acyl carrier prote 20.1 97 0.0033 19.1 3.2 21 50-70 32-52 (77)
46 2l4b_A Acyl carrier protein; i 20.0 92 0.0032 20.2 3.2 22 50-71 42-63 (88)
No 1
>2ftc_E L12MT, MRP-L12, 39S ribosomal protein L12, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=100.00 E-value=6.5e-45 Score=285.62 Aligned_cols=131 Identities=33% Similarity=0.482 Sum_probs=110.8
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC--CCCCCC---chhhhhhhccceeEEEeecCcch
Q 030926 39 QKLERISDELLDLTKLERYDFATLFGCKLGLDRFGPVVPAFPSSGP--AASGST---SAETKAAEKTAFDVKLEKYDQAT 113 (169)
Q Consensus 39 ~kv~~Ivd~I~~LTLlE~seLv~~leekfgv~~~~~~~~~~~~~~~--~a~~~~---~~~~~~~EKt~fdV~L~~~~~~k 113 (169)
+|+++|+|+|++|||+|++||++.|+++|||++.++++++++++++ ++++++ ..+++.+|||+|||+|++||+++
T Consensus 1 ~kv~~ive~i~~LtllE~~eLv~~leekfgv~aaa~~~~~~~~~~~~~~a~a~~~~~~~a~~~eEKteFdV~L~~~~a~~ 80 (137)
T 2ftc_E 1 PKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLMPMGGMVPGAAPAPTAPEAAEEDVPKQKERTHFTVRLTEAKPVD 80 (137)
T ss_pred CcHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcccccccccccccCCCCccccccccccccccccCCeeEEEeeccCccc
Confidence 5899999999999999999999999999999987654333211111 111111 11233579999999999998899
Q ss_pred hHHHHHHHHHh-hCCChhHHHHHHhhcchhhhcCCCHHHHHHHHHHHHHcCcEEEeC
Q 030926 114 KIKIIKEVKTF-TGLGLKESKDLVEKAPAVIKKGVTKEEADKIVEKLKELNAIVVLE 169 (169)
Q Consensus 114 Ki~vIK~VR~i-t~LgLkEaK~lVe~~P~~IKe~vsKeEAEeik~kLe~aGA~VeiE 169 (169)
||+|||+||++ |||||||||+|||++|++||+|+||+|||+||++|+++||+|+||
T Consensus 81 KI~VIK~VR~i~TgLgLkEAK~lVe~aP~~iKe~vsKeeAE~iK~kLe~aGA~Vele 137 (137)
T 2ftc_E 81 KVKLIKEIKNYVQGINLVQAKKLVESLPQEIKANVAKAEAEKIKAALEAVGGTVVLE 137 (137)
T ss_pred hhHHHHHHHHhccCCChHHHHHHHHhCCHHHHcCCCHHHHHHHHHHHHHcCCEEEeC
Confidence 99999999997 999999999999999999999999999999999999999999997
No 2
>2j01_L 50S ribosomal protein L7; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_L 3i8i_I
Probab=100.00 E-value=9.7e-41 Score=258.47 Aligned_cols=121 Identities=43% Similarity=0.615 Sum_probs=105.2
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCchhhhhhhccceeEEEeecCcchhHHHHH
Q 030926 40 KLERISDELLDLTKLERYDFATLFGCKLGLDRFGPVVPAFPSSGPAASGSTSAETKAAEKTAFDVKLEKYDQATKIKIIK 119 (169)
Q Consensus 40 kv~~Ivd~I~~LTLlE~seLv~~leekfgv~~~~~~~~~~~~~~~~a~~~~~~~~~~~EKt~fdV~L~~~~~~kKi~vIK 119 (169)
++++|+|+|++||++|++||++.|+++|||++.+|+++++ +|+++++ +++.+|||+|||+|++++ ++||+|||
T Consensus 4 ~~~~i~e~i~~ltllE~~eLv~~lee~fgv~aaapva~~~---~~~~a~~---a~a~eEKteFdV~L~~~~-~~KI~VIK 76 (125)
T 2j01_L 4 DIERIKEELSQATVLELKQLIDALKEAWGVTAAAPVAVAA---APAAGAA---AAPAEEKTEFDVILKEAG-AKKLEVIK 76 (125)
T ss_pred cHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCccccccccc---cCccccc---cccccccceeEEEEeeCC-cchHHHHH
Confidence 4689999999999999999999999999999876543221 1211111 123579999999999996 89999999
Q ss_pred HHHHhhCCChhHHHHHHhhcchhhhcCCCHHHHHHHHHHHHHcCcEEEe
Q 030926 120 EVKTFTGLGLKESKDLVEKAPAVIKKGVTKEEADKIVEKLKELNAIVVL 168 (169)
Q Consensus 120 ~VR~it~LgLkEaK~lVe~~P~~IKe~vsKeEAEeik~kLe~aGA~Vei 168 (169)
+||++|||||||||+|||++ ++||+|++|+|||+||++|+++||+|+|
T Consensus 77 ~VR~itgLgLkEAK~lVe~a-~~iKe~vsKeeAE~iK~kLe~aGA~Vel 124 (125)
T 2j01_L 77 ELRAITGLGLKEAKDLAEKG-GPVKEGVSKQEAEEIKKKLEAVGAVVEL 124 (125)
T ss_pred HHHHhcCCCHHHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCEEEe
Confidence 99999999999999999999 9999999999999999999999999997
No 3
>2zjq_5 50S ribosomal protein L7/L12; ribosome, ribosomal subunit, thiopeptide antibiotics, complex, translational regulation, molecular switch; 3.30A {Deinococcus radiodurans} SCOP: d.45.1.1
Probab=100.00 E-value=3.6e-40 Score=254.35 Aligned_cols=118 Identities=40% Similarity=0.521 Sum_probs=104.2
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCchhhhhhhccceeEEEeecCcchhHHHHH
Q 030926 40 KLERISDELLDLTKLERYDFATLFGCKLGLDRFGPVVPAFPSSGPAASGSTSAETKAAEKTAFDVKLEKYDQATKIKIIK 119 (169)
Q Consensus 40 kv~~Ivd~I~~LTLlE~seLv~~leekfgv~~~~~~~~~~~~~~~~a~~~~~~~~~~~EKt~fdV~L~~~~~~kKi~vIK 119 (169)
++++|+|+|++||++|++||++.|+++|||++.+|++++ +|++++ ++.+|||+|||+|++++ ++||+|||
T Consensus 4 ~~~~i~e~i~~ltllE~~eLv~~lee~fgv~aaap~a~a----~~~a~a-----~a~eEKteFdV~L~~~~-~~KI~VIK 73 (122)
T 2zjq_5 4 DKQALIDQLGQLTIMELADLIDGLKETWGVTAAVAVSGG----GAGAAS-----PAAEEKTEFDVVLIDAG-ASKINVIK 73 (122)
T ss_pred cHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCccccccc----CCCccc-----ccccccceeEEEEecCC-cchHHHHH
Confidence 468999999999999999999999999999987653321 121111 22479999999999996 89999999
Q ss_pred HHHHhhCCChhHHHHHHhhcchhhhcCCCHHHHHHHHHHHHHcCcEEEe
Q 030926 120 EVKTFTGLGLKESKDLVEKAPAVIKKGVTKEEADKIVEKLKELNAIVVL 168 (169)
Q Consensus 120 ~VR~it~LgLkEaK~lVe~~P~~IKe~vsKeEAEeik~kLe~aGA~Vei 168 (169)
+||++|||||||||+|||++ ++||+|++|+|||+||++|+++||+|+|
T Consensus 74 ~VR~itgLgLkEAK~lVe~a-~~iKe~vsKeeAE~iK~kLe~aGA~Vel 121 (122)
T 2zjq_5 74 EIRGITGLGLKEAKDMSEKG-GVLKEGVAKDEAEKMKAQLEAAGARVEL 121 (122)
T ss_pred HHHHhcCCCHHHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCEEEe
Confidence 99999999999999999999 9999999999999999999999999997
No 4
>1dd3_A 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix-bundl helix- bundle, alpha-beta structure; 2.00A {Thermotoga maritima} SCOP: a.108.1.1 d.45.1.1 PDB: 1dd4_A* 1giy_I 1yl3_I
Probab=100.00 E-value=1.1e-41 Score=264.55 Aligned_cols=122 Identities=44% Similarity=0.604 Sum_probs=104.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCchhhhhhhccceeEEEeecCcchhHHHHHH
Q 030926 41 LERISDELLDLTKLERYDFATLFGCKLGLDRFGPVVPAFPSSGPAASGSTSAETKAAEKTAFDVKLEKYDQATKIKIIKE 120 (169)
Q Consensus 41 v~~Ivd~I~~LTLlE~seLv~~leekfgv~~~~~~~~~~~~~~~~a~~~~~~~~~~~EKt~fdV~L~~~~~~kKi~vIK~ 120 (169)
+++|+|+|++||++|++||++.|+++|||++.+|+++++ ++++++ ..+++.+|||+|||+|++++ ++||+|||+
T Consensus 3 ~~~ive~i~~ltllE~~eLv~~lee~fgv~aaapva~~~---~~~~~~--a~~~a~eEKteFdV~L~~~~-~~KI~VIK~ 76 (128)
T 1dd3_A 3 IDEIIEAIEKLTVSELAELVKKLEDKFGVTAAAPVAVAA---APVAGA--AAGAAQEEKTEFDVVLKSFG-QNKIQVIKV 76 (128)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHHCHHHHHHHHHHH---HHHHHH--HHHHHHHTTSSEEEEEEECT-TCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCcchhhccc---cccccc--cccccccccceeeEEEecCC-cchHHHHHH
Confidence 689999999999999999999999999999764432211 110111 01234579999999999996 799999999
Q ss_pred HHHhhCCChhHHHHHHhhcch---hhhcCCCHHHHHHHHHHHHHcCcEEEe
Q 030926 121 VKTFTGLGLKESKDLVEKAPA---VIKKGVTKEEADKIVEKLKELNAIVVL 168 (169)
Q Consensus 121 VR~it~LgLkEaK~lVe~~P~---~IKe~vsKeEAEeik~kLe~aGA~Vei 168 (169)
||++|||||||||+|||++|+ +||+|++|+|||+||++|+++||+|+|
T Consensus 77 VR~itgLgLKEAK~lVe~aP~~~~~iKe~vsKeeAE~iK~kLe~aGA~Vel 127 (128)
T 1dd3_A 77 VREITGLGLKEAKDLVEKAGSPDAVIKSGVSKEEAEEIKKKLEEAGAEVEL 127 (128)
T ss_dssp HHHHHCCCHHHHHHHHTTTTSTTCEEEEEECHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHhcCCCHHHHHHHHHhCCccchHHHcCCCHHHHHHHHHHHHHcCCEEEe
Confidence 999999999999999999999 999999999999999999999999997
No 5
>3sgf_J 50S ribosomal protein L7/L12; typeii release factor binding with ribosome, ribosome-antibi complex; 3.20A {Escherichia coli} PDB: 2xtg_L 2xux_L 3uos_J 1rqu_A 1rqv_A 2gya_3 2gyc_3 1rqt_A
Probab=100.00 E-value=2.3e-41 Score=260.68 Aligned_cols=117 Identities=36% Similarity=0.528 Sum_probs=27.1
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCCchhhhhhhccceeEEEeecCcchhHHHHH
Q 030926 40 KLERISDELLDLTKLERYDFATLFGCKLGLDRFGPVVPAFPSSGPAASGSTSAETKAAEKTAFDVKLEKYDQATKIKIIK 119 (169)
Q Consensus 40 kv~~Ivd~I~~LTLlE~seLv~~leekfgv~~~~~~~~~~~~~~~~a~~~~~~~~~~~EKt~fdV~L~~~~~~kKi~vIK 119 (169)
++++|+|+|++||++|++||++.|+++|||++.++++ +|++ ++++.+|||+|||+|++++ ++||+|||
T Consensus 4 ~~~~ive~i~~ltllE~~eLv~~lee~fgVsaaa~~a------~~a~-----~a~a~eEKteFdV~L~~~g-~~Ki~VIK 71 (121)
T 3sgf_J 4 TKDQIIEAVAAMSVMDVVELISAMEEKFGVSAAAAVA------VAAG-----PVEAAEEKTEFDVILKAAG-ANKVAVIK 71 (121)
T ss_dssp CHHHHHHGGGGCHHHHHHHHHTTTCSCC----------------------------------------------------
T ss_pred cHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCcccccc------cccc-----ccccccccceeEEEEecCc-hhhHHHHH
Confidence 5789999999999999999999999999999765431 1111 1223579999999999985 79999999
Q ss_pred HHHHhhCCChhHHHHHHhhcchhhhcCCCHHHHHHHHHHHHHcCcEEEe
Q 030926 120 EVKTFTGLGLKESKDLVEKAPAVIKKGVTKEEADKIVEKLKELNAIVVL 168 (169)
Q Consensus 120 ~VR~it~LgLkEaK~lVe~~P~~IKe~vsKeEAEeik~kLe~aGA~Vei 168 (169)
+||++|||||||||+|||++|++||+|++|+|||+||++|+++||+|+|
T Consensus 72 ~VR~itgLgLkEAK~lVe~aP~~iKe~vsKeeAE~ik~kLe~aGA~Vel 120 (121)
T 3sgf_J 72 AVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEV 120 (121)
T ss_dssp -------------------------------------------------
T ss_pred HHHHhcCCCHHHHHHHHHhCCHHHHcCCCHHHHHHHHHHHHHcCCEEee
Confidence 9999999999999999999999999999999999999999999999987
No 6
>1ctf_A Ribosomal protein L7/L12; 1.70A {Escherichia coli} SCOP: d.45.1.1 PDB: 1rqs_A 2bcw_B
Probab=99.96 E-value=2.4e-30 Score=184.54 Aligned_cols=71 Identities=51% Similarity=0.727 Sum_probs=65.9
Q ss_pred hhccceeEEEeecCcchhHHHHHHHHHhhCCChhHHHHHHhhcchhhhcCCCHHHHHHHHHHHHHcCcEEEe
Q 030926 97 AEKTAFDVKLEKYDQATKIKIIKEVKTFTGLGLKESKDLVEKAPAVIKKGVTKEEADKIVEKLKELNAIVVL 168 (169)
Q Consensus 97 ~EKt~fdV~L~~~~~~kKi~vIK~VR~it~LgLkEaK~lVe~~P~~IKe~vsKeEAEeik~kLe~aGA~Vei 168 (169)
+|||+|||+|++++ ++||+|||+||++|||||+|||+|||++|++||+|++|+|||+||++|+++||+|+|
T Consensus 3 eEkteFdV~L~~~~-~~Ki~vIK~VR~itgLgLkEAK~lVe~~P~~iKe~vsKeeAe~ik~~Le~aGA~Vel 73 (74)
T 1ctf_A 3 EEKTEFDVILKAAG-ANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEV 73 (74)
T ss_dssp ----CEEEEEEECG-GGHHHHHHHHHHHHCCCHHHHHHHHHTCSEEEEEEECHHHHHHHHHHHHHHTCEEEE
T ss_pred cccceeEEEEeeCC-cchhHHHHHHHHHcCCCHHHHHHHHHhCcHHHHcCCCHHHHHHHHHHHHHcCCEEEe
Confidence 68999999999995 899999999999999999999999999999999999999999999999999999997
No 7
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=99.14 E-value=5.7e-11 Score=75.51 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=31.5
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCCC
Q 030926 40 KLERISDELLDLTKLERYDFATLFGCKLGLDRFGP 74 (169)
Q Consensus 40 kv~~Ivd~I~~LTLlE~seLv~~leekfgv~~~~~ 74 (169)
++++|+|+|++||++|++||++.||++|||+++++
T Consensus 2 ~~~~iie~i~~lTvlE~~eLvk~leekfGVsaaa~ 36 (40)
T 1dd4_C 2 TIDEIIEAIEKLTVSELAELVKKLEDKFGVTAAAP 36 (40)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHTCCCSCC-
T ss_pred CHHHHHHHHHhCcHHHHHHHHHHHHHHHCCCcccc
Confidence 46899999999999999999999999999997543
No 8
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=98.60 E-value=3.3e-08 Score=59.20 Aligned_cols=28 Identities=21% Similarity=0.309 Sum_probs=27.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhC
Q 030926 41 LERISDELLDLTKLERYDFATLFGCKLG 68 (169)
Q Consensus 41 v~~Ivd~I~~LTLlE~seLv~~leekfg 68 (169)
+++|+|+|++||++|++||++.||++||
T Consensus 3 ~~~iie~i~~lTvlEl~eLvk~lEe~fG 30 (30)
T 1zav_U 3 IDEIIEAIEKLTVSELAELVKKLEDKFG 30 (30)
T ss_dssp HHHHHHHHHHSBHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHhC
Confidence 5899999999999999999999999998
No 9
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=83.28 E-value=0.95 Score=30.81 Aligned_cols=26 Identities=15% Similarity=0.299 Sum_probs=22.2
Q ss_pred HHHHHHHHHhhCCChhHHHHHHhhcc
Q 030926 115 IKIIKEVKTFTGLGLKESKDLVEKAP 140 (169)
Q Consensus 115 i~vIK~VR~it~LgLkEaK~lVe~~P 140 (169)
...||++|+.||.|++|+|+.++.+-
T Consensus 10 ~~~Vk~LRe~TGag~~dcKkAL~e~~ 35 (64)
T 2cp9_A 10 KELLMKLRRKTGYSFVNCKKALETCG 35 (64)
T ss_dssp CHHHHHHHHHHCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 37899999999999999999776543
No 10
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=64.31 E-value=5.2 Score=32.54 Aligned_cols=27 Identities=30% Similarity=0.487 Sum_probs=23.2
Q ss_pred HHHHHHHHHhhCCChhHHHHHHhhcch
Q 030926 115 IKIIKEVKTFTGLGLKESKDLVEKAPA 141 (169)
Q Consensus 115 i~vIK~VR~it~LgLkEaK~lVe~~P~ 141 (169)
.+.||++|+.||.|++++|+.++..-.
T Consensus 4 a~~VKeLRe~TGagmmdCKkAL~e~~G 30 (196)
T 1aip_C 4 MELIKKLREATGAGMMDVKRALEDAGW 30 (196)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCC
Confidence 578999999999999999997765543
No 11
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=60.70 E-value=6.2 Score=33.64 Aligned_cols=27 Identities=15% Similarity=0.289 Sum_probs=23.5
Q ss_pred HHHHHHHHHhhCCChhHHHHHHhhcch
Q 030926 115 IKIIKEVKTFTGLGLKESKDLVEKAPA 141 (169)
Q Consensus 115 i~vIK~VR~it~LgLkEaK~lVe~~P~ 141 (169)
.+.||++|+.||.|++++|+.++..-.
T Consensus 5 a~~VKeLRe~TGagmmdCKKAL~e~~G 31 (291)
T 1xb2_B 5 KELLMKLRRKTGYSFINCKKALETCGG 31 (291)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCC
Confidence 478999999999999999998876653
No 12
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=51.59 E-value=11 Score=25.04 Aligned_cols=29 Identities=17% Similarity=0.320 Sum_probs=23.7
Q ss_pred chhHHHHHHHHHhhCCChhHHHHHHhhcc
Q 030926 112 ATKIKIIKEVKTFTGLGLKESKDLVEKAP 140 (169)
Q Consensus 112 ~kKi~vIK~VR~it~LgLkEaK~lVe~~P 140 (169)
-..+..|+.+|.-.|++|+|.+.+++..|
T Consensus 50 l~~l~~I~~l~~~~G~sl~ei~~~l~~~~ 78 (81)
T 2jml_A 50 VEAVRRVARLIQEEGLSVSEAIAQVKTEP 78 (81)
T ss_dssp HHHHHHHHHHHHHTSTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHccC
Confidence 35677778877667999999999998765
No 13
>1mul_A NS2, HU-2, DNA binding protein HU-alpha; histone-like; HET: DNA; 2.30A {Escherichia coli} SCOP: a.55.1.1 PDB: 2o97_A
Probab=43.38 E-value=12 Score=25.68 Aligned_cols=34 Identities=21% Similarity=0.276 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHhhCCChhHHHHHHhhcchhhhcC
Q 030926 113 TKIKIIKEVKTFTGLGLKESKDLVEKAPAVIKKG 146 (169)
Q Consensus 113 kKi~vIK~VR~it~LgLkEaK~lVe~~P~~IKe~ 146 (169)
+|-.+|+.|.+-++|.-++++..|+.+-..|.+.
T Consensus 2 ~k~eli~~ia~~~~ls~~~~~~~l~~~~~~i~~~ 35 (90)
T 1mul_A 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITES 35 (90)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 3568999999999999999999999988777653
No 14
>3rhi_A DNA-binding protein HU; structural genomics, center for structural genom infectious diseases, csgid; 2.48A {Bacillus anthracis} SCOP: a.55.1.1 PDB: 1hue_A 1huu_A
Probab=41.57 E-value=10 Score=26.24 Aligned_cols=34 Identities=24% Similarity=0.293 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHhhCCChhHHHHHHhhcchhhhcC
Q 030926 113 TKIKIIKEVKTFTGLGLKESKDLVEKAPAVIKKG 146 (169)
Q Consensus 113 kKi~vIK~VR~it~LgLkEaK~lVe~~P~~IKe~ 146 (169)
+|-.+|+.|.+-++|.-++++..|+.+-.+|.+.
T Consensus 5 tk~eLi~~ia~~~~lsk~~~~~~v~~~~~~i~~~ 38 (93)
T 3rhi_A 5 NKTELIKNVAQNAEISQKEATVVVQTVVESITNT 38 (93)
T ss_dssp --CHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHH
Confidence 4668999999999999999999999987777653
No 15
>3c4i_A DNA-binding protein HU homolog; dimerization by four helix bundle interaction, DNA condensat binding; 2.04A {Mycobacterium tuberculosis}
Probab=40.51 E-value=14 Score=25.94 Aligned_cols=34 Identities=18% Similarity=0.243 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHhhCCChhHHHHHHhhcchhhhcC
Q 030926 113 TKIKIIKEVKTFTGLGLKESKDLVEKAPAVIKKG 146 (169)
Q Consensus 113 kKi~vIK~VR~it~LgLkEaK~lVe~~P~~IKe~ 146 (169)
+|-.+|+.|.+-++|.-++++..|+.+-.+|.+.
T Consensus 2 tk~eLi~~ia~~~~lsk~~~~~~l~~~~~~i~~~ 35 (99)
T 3c4i_A 2 NKAELIDVLTQKLGSDRRQATAAVENVVDTIVRA 35 (99)
T ss_dssp BHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 4668999999999999999999999988777653
No 16
>1p71_A DNA-binding protein HU; protein-DNA complex, DNA bending, DNA binding protein-DN; 1.90A {Anabaena SP} SCOP: a.55.1.1 PDB: 1p51_A 1p78_A
Probab=40.15 E-value=14 Score=25.51 Aligned_cols=34 Identities=15% Similarity=0.188 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHhhCCChhHHHHHHhhcchhhhcC
Q 030926 113 TKIKIIKEVKTFTGLGLKESKDLVEKAPAVIKKG 146 (169)
Q Consensus 113 kKi~vIK~VR~it~LgLkEaK~lVe~~P~~IKe~ 146 (169)
+|-.+|+.|.+.++|.-++++..|+.+-..|.+.
T Consensus 2 ~k~eli~~ia~~~~ls~~~~~~~l~~~~~~i~~~ 35 (94)
T 1p71_A 2 NKGELVDAVAEKASVTKKQADAVLTAALETIIEA 35 (94)
T ss_dssp BHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 4668999999999999999999999987776653
No 17
>1b8z_A Protein (histonelike protein HU); thermostable DNA binding protein; 1.60A {Thermotoga maritima} SCOP: a.55.1.1 PDB: 1riy_A
Probab=39.99 E-value=22 Score=24.15 Aligned_cols=34 Identities=21% Similarity=0.269 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHhhCCChhHHHHHHhhcchhhhcC
Q 030926 113 TKIKIIKEVKTFTGLGLKESKDLVEKAPAVIKKG 146 (169)
Q Consensus 113 kKi~vIK~VR~it~LgLkEaK~lVe~~P~~IKe~ 146 (169)
+|-.+|+.|.+.++|.-++++..|+.+-..|.+.
T Consensus 2 tk~eli~~ia~~~~ls~~~~~~~l~~~~~~i~~~ 35 (90)
T 1b8z_A 2 NKKELIDRVAKKAGAKKKDVKLILDTILETITEA 35 (90)
T ss_dssp CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHH
Confidence 3668999999999999999999999987777653
No 18
>2o97_B NS1, HU-1, DNA-binding protein HU-beta; heterodimer, DNA structure, DNA supercoiling, E DNA binding protein; 2.45A {Escherichia coli} SCOP: a.55.1.1
Probab=37.26 E-value=23 Score=24.15 Aligned_cols=34 Identities=9% Similarity=0.167 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHhhCCChhHHHHHHhhcchhhhcC
Q 030926 113 TKIKIIKEVKTFTGLGLKESKDLVEKAPAVIKKG 146 (169)
Q Consensus 113 kKi~vIK~VR~it~LgLkEaK~lVe~~P~~IKe~ 146 (169)
+|-.+|+.|.+-++|.-++++..|+.+-..|.+.
T Consensus 2 ~k~eli~~ia~~~~ls~~~~~~~l~~~~~~i~~~ 35 (90)
T 2o97_B 2 NKSQLIDKIAAGADISKAAAGRALDAIIASVTES 35 (90)
T ss_dssp BHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 4668899999999999999999999987776653
No 19
>1owf_A IHF-alpha, integration HOST factor alpha-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ihf_A 1ouz_A 1owg_A 2ht0_A
Probab=36.51 E-value=17 Score=25.38 Aligned_cols=34 Identities=26% Similarity=0.308 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHhhCCChhHHHHHHhhcchhhhcC
Q 030926 113 TKIKIIKEVKTFTGLGLKESKDLVEKAPAVIKKG 146 (169)
Q Consensus 113 kKi~vIK~VR~it~LgLkEaK~lVe~~P~~IKe~ 146 (169)
+|-.+|+.|.+.++|.-++++..|+.+-.+|.+.
T Consensus 4 ~k~eli~~ia~~~~ls~~~~~~vl~~~~~~i~~~ 37 (99)
T 1owf_A 4 TKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRA 37 (99)
T ss_dssp CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 4668999999999999999999999988777653
No 20
>1exe_A Transcription factor 1; beta ribbon ARMS, DNA-binding, DNA-bending protein; NMR {Bacillus phage SPO1} SCOP: a.55.1.1 PDB: 1wtu_A
Probab=36.42 E-value=6.4 Score=27.73 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHhhCCChhHHHHHHhhcchhhhcCC
Q 030926 113 TKIKIIKEVKTFTGLGLKESKDLVEKAPAVIKKGV 147 (169)
Q Consensus 113 kKi~vIK~VR~it~LgLkEaK~lVe~~P~~IKe~v 147 (169)
+|-.+|+.|.+.++|.-++++..|+.+-.+|.+.+
T Consensus 2 tk~eLi~~ia~~~~lsk~~~~~~l~~~~~~i~~~L 36 (99)
T 1exe_A 2 NKTELIKAIAQDTGLTQVSVSKMLASFEKIITETV 36 (99)
T ss_dssp CTTHHHHHHHHHHCSCCTTHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 35689999999999999999999999888776644
No 21
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=34.95 E-value=32 Score=23.23 Aligned_cols=25 Identities=20% Similarity=0.537 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHhhCCChhHHHHHHhh
Q 030926 113 TKIKIIKEVKTFTGLGLKESKDLVEK 138 (169)
Q Consensus 113 kKi~vIK~VR~it~LgLkEaK~lVe~ 138 (169)
.++..|+..|+ +|++|.|-|++++.
T Consensus 4 ~rL~~I~~lr~-lGfsL~eIk~~l~~ 28 (99)
T 1q08_A 4 QRLKFIRHARQ-LGFSLESIRELLSI 28 (99)
T ss_dssp HHHHHHHHHHH-TTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 45677777776 49999999999974
No 22
>3dnj_A ATP-dependent CLP protease adapter protein CLPS; adaptor, protein-peptide complex, peptide binding protein; 1.15A {Caulobacter vibrioides} SCOP: d.45.1.2 PDB: 3g19_A 3gq0_A 3gq1_A 3gw1_A 3g1b_A 3g3p_A*
Probab=33.62 E-value=1.2e+02 Score=21.12 Aligned_cols=60 Identities=13% Similarity=0.115 Sum_probs=45.8
Q ss_pred ccceeEEEeecCcchhHHHHHHHHHhhCCChhHHHHHHhhcc----hhhhcCCCHHHHHHHHHHH
Q 030926 99 KTAFDVKLEKYDQATKIKIIKEVKTFTGLGLKESKDLVEKAP----AVIKKGVTKEEADKIVEKL 159 (169)
Q Consensus 99 Kt~fdV~L~~~~~~kKi~vIK~VR~it~LgLkEaK~lVe~~P----~~IKe~vsKeEAEeik~kL 159 (169)
...|.|+|-+-|-.--==||..++.+.+++..+|-.+.-.+= .++..+ ++|.||--..++
T Consensus 4 p~~y~Vil~NDd~~tme~Vv~vL~~vf~~~~e~A~~iml~VH~~G~avv~~~-~~e~AE~k~~q~ 67 (85)
T 3dnj_A 4 PSLYRVLILNDDYTPMEFVVYVLERFFNKSREDATRIMLHVHQNGVGVCGVY-TYEVAETKVAQV 67 (85)
T ss_dssp --CEEEEEECCSSSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSEEEEEEE-CHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCcEEEEEe-cHHHHHHHHHHH
Confidence 457889997755445557999999999999999999987652 244444 999999988887
No 23
>2p63_A Cell division control protein 4; ubiquitination, helix bundle, SCF complex, cell cycle; 2.67A {Saccharomyces cerevisiae}
Probab=32.90 E-value=46 Score=22.00 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=22.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHh
Q 030926 42 ERISDELLDLTKLERYDFATLFGCKL 67 (169)
Q Consensus 42 ~~Ivd~I~~LTLlE~seLv~~leekf 67 (169)
.-|..-+++|+.-|++||+..|++-+
T Consensus 28 nLiF~Lvs~m~RseLSDl~TlikDNL 53 (56)
T 2p63_A 28 NLLFRLVANMDRSELSDLGTLIKDNL 53 (56)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhh
Confidence 45677789999999999999999865
No 24
>1owf_B IHF-beta, integration HOST factor beta-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ouz_B 2ht0_B 1ihf_B 1owg_B
Probab=32.64 E-value=21 Score=24.48 Aligned_cols=34 Identities=21% Similarity=0.233 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHh-hCCChhHHHHHHhhcchhhhcC
Q 030926 113 TKIKIIKEVKTF-TGLGLKESKDLVEKAPAVIKKG 146 (169)
Q Consensus 113 kKi~vIK~VR~i-t~LgLkEaK~lVe~~P~~IKe~ 146 (169)
+|-.+|+.|.+. ++|.-++++..|+.+-..|.+.
T Consensus 2 tk~eli~~ia~~~~~ls~~~~~~~l~~~~~~i~~~ 36 (94)
T 1owf_B 2 TKSELIERLATQQSHIPAKTVEDAVKEMLEHMAST 36 (94)
T ss_dssp BHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 466899999988 7999999999999987776653
No 25
>2w9r_A YLJA, ATP-dependent CLP protease adapter protein CLPS; chaperone, adaptor protein, DNA condensation, iron, CLPS, CLPA, cytoplasm, N-END RULE; HET: DNA; 1.70A {Escherichia coli} PDB: 2wa9_A 1mbx_C* 1mbv_B 1mbu_C* 1r6o_C* 1r6q_C* 2wa8_A 3o2h_A* 3o2b_A* 1mg9_A* 1lzw_A*
Probab=30.47 E-value=1.4e+02 Score=21.66 Aligned_cols=72 Identities=18% Similarity=0.209 Sum_probs=54.5
Q ss_pred hhccceeEEEeecCcchhHHHHHHHHHhhCCChhHHHHHHhhcc----hhhhcCCCHHHHHHHHHHHHH------cCcEE
Q 030926 97 AEKTAFDVKLEKYDQATKIKIIKEVKTFTGLGLKESKDLVEKAP----AVIKKGVTKEEADKIVEKLKE------LNAIV 166 (169)
Q Consensus 97 ~EKt~fdV~L~~~~~~kKi~vIK~VR~it~LgLkEaK~lVe~~P----~~IKe~vsKeEAEeik~kLe~------aGA~V 166 (169)
.+...|.|+|-+-|-.--=-||..+..+.+++..+|-++.-.+= .++.. -++|.||....++.. .|-.+
T Consensus 23 ~~p~~y~ViL~NDd~ttmefVv~vL~~~f~~~~~~A~~iml~VH~~G~avv~~-~~~e~AE~k~~~l~~~ar~~~~pL~~ 101 (108)
T 2w9r_A 23 KPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGV-FTAEVAETKVAMVNKYARENEHPLLC 101 (108)
T ss_dssp CCCCEEEEEEECCSSSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSEEEEEE-EEHHHHHHHHHHHHHHHHHTTCCCEE
T ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHhhCCCEEEEE-eCHHHHHHHHHHHHHHHHhCCCCcEE
Confidence 34456999998755455667999999999999999999887552 24444 499999999999985 45566
Q ss_pred EeC
Q 030926 167 VLE 169 (169)
Q Consensus 167 eiE 169 (169)
.||
T Consensus 102 t~E 104 (108)
T 2w9r_A 102 TLE 104 (108)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 26
>3a1y_A 50S ribosomal protein P1 (L12P); stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=29.18 E-value=23 Score=23.11 Aligned_cols=16 Identities=6% Similarity=0.030 Sum_probs=14.1
Q ss_pred HHHHHHHHHHcCcEEE
Q 030926 152 ADKIVEKLKELNAIVV 167 (169)
Q Consensus 152 AEeik~kLe~aGA~Ve 167 (169)
+++|++.|+++|.+|+
T Consensus 19 ~~~I~~il~aaGveve 34 (58)
T 3a1y_A 19 EENLKAVLQAAGVEPE 34 (58)
T ss_dssp HHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHcCCCcc
Confidence 7889999999998875
No 27
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=26.76 E-value=50 Score=25.97 Aligned_cols=28 Identities=29% Similarity=0.380 Sum_probs=22.8
Q ss_pred cchhHHHHHHHHHhhCCChhHHHHHHhhc
Q 030926 111 QATKIKIIKEVKTFTGLGLKESKDLVEKA 139 (169)
Q Consensus 111 ~~kKi~vIK~VR~it~LgLkEaK~lVe~~ 139 (169)
.-.++..|+.+|+. |++|+|.|++++..
T Consensus 49 ~~~~l~~i~~l~~~-g~~l~~i~~~~~~~ 76 (278)
T 1r8e_A 49 QLIHLDLIKSLKYI-GTPLEEMKKAQDLE 76 (278)
T ss_dssp GGGHHHHHHHHHHT-TCCHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHC-CCCHHHHHHHHHhC
Confidence 34778888888765 99999999999865
No 28
>2np2_A HBB; protein-DNA complex, DNA-binding protein, DNA-bending protein, dnabii family, HU/IHF family, DNA binding protein/DNA complex; 3.02A {Borrelia burgdorferi}
Probab=25.50 E-value=27 Score=24.82 Aligned_cols=33 Identities=18% Similarity=0.156 Sum_probs=28.3
Q ss_pred hhHHHHHHHH-----HhhCCChhHHHHHHhhcchhhhc
Q 030926 113 TKIKIIKEVK-----TFTGLGLKESKDLVEKAPAVIKK 145 (169)
Q Consensus 113 kKi~vIK~VR-----~it~LgLkEaK~lVe~~P~~IKe 145 (169)
+|-.+|+.|. +.++|.-++++..|+.+-.+|.+
T Consensus 10 tk~eLi~~ia~~~~~~~~~lsk~~~~~vl~~~~~~i~~ 47 (108)
T 2np2_A 10 TKSDIVDQIALNIKNNNLKLEKKYIRLVIDAFFEELKS 47 (108)
T ss_dssp EHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhhhhhhcCCCHHHHHHHHHHHHHHHHH
Confidence 5678999998 78999999999999998777654
No 29
>1in0_A YAJQ protein, HI1034; alpha and beta sandwich, structural genomics, structure 2 function project, S2F, unknown function; 2.14A {Haemophilus influenzae} SCOP: d.58.49.1 d.58.49.1
Probab=24.61 E-value=40 Score=26.68 Aligned_cols=64 Identities=17% Similarity=0.209 Sum_probs=42.0
Q ss_pred eEEEeecCcchhHHHHHHH-HH-h--hCCChhHHHH-HHh-------hcchhhhcCCCHHHHHHHHHHHHHcCcEEE
Q 030926 103 DVKLEKYDQATKIKIIKEV-KT-F--TGLGLKESKD-LVE-------KAPAVIKKGVTKEEADKIVEKLKELNAIVV 167 (169)
Q Consensus 103 dV~L~~~~~~kKi~vIK~V-R~-i--t~LgLkEaK~-lVe-------~~P~~IKe~vsKeEAEeik~kLe~aGA~Ve 167 (169)
.++|.+- .+.|+.-+..| +. + -|++|+--.- -++ ..-..|++|++.|.|.+|.+.+++.+-+|.
T Consensus 47 ~i~l~a~-~d~kl~qv~DiL~~kl~KRgid~k~ld~~~~~~~sG~~vrq~~~lk~GI~~e~AKkIvK~IKdsklKVq 122 (163)
T 1in0_A 47 TIKITTE-SDFQLEQLIEILIGSCIKRGIEHSSLDIPAESEHHGKLYSKEIKLKQGIETEMAKKITKLVKDSKIKVQ 122 (163)
T ss_dssp EEEEEES-CHHHHHHHHHHHHHHHHHTTCCGGGEECCSSCEEETTEEEEEEEECCSCCHHHHHHHHHHHHHHTCSEE
T ss_pred EEEEEeC-CHHHHHHHHHHHHHHHHHcCCCchhcccCCCccccCCEEEEEEEeecccCHHHHHHHHHHHHhcCCcce
Confidence 5788774 46887776644 52 2 2666651110 001 112468999999999999999999988764
No 30
>3fxd_A Protein ICMQ; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila} PDB: 3fxe_A
Probab=24.48 E-value=47 Score=22.08 Aligned_cols=19 Identities=21% Similarity=0.476 Sum_probs=15.4
Q ss_pred hcCCCHHHHHHHHHHHHHc
Q 030926 144 KKGVTKEEADKIVEKLKEL 162 (169)
Q Consensus 144 Ke~vsKeEAEeik~kLe~a 162 (169)
|+.++.|.+++|.+.|.++
T Consensus 2 kd~lt~eq~~aILkaLdea 20 (57)
T 3fxd_A 2 KDQLSDEQKETILKALNDA 20 (57)
T ss_dssp --CCCHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHH
Confidence 7789999999999999765
No 31
>2zkr_l 60S ribosomal protein L27A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=24.46 E-value=47 Score=25.16 Aligned_cols=15 Identities=33% Similarity=0.496 Sum_probs=12.2
Q ss_pred HHHHHHHHcCcEEEe
Q 030926 154 KIVEKLKELNAIVVL 168 (169)
Q Consensus 154 eik~kLe~aGA~Vei 168 (169)
..++++|+||++|++
T Consensus 132 ~A~ekIeaAGG~v~~ 146 (148)
T 2zkr_l 132 RAEEKIKSVGGACVL 146 (148)
T ss_dssp HHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCEEEe
Confidence 456788999999985
No 32
>1ctf_A Ribosomal protein L7/L12; 1.70A {Escherichia coli} SCOP: d.45.1.1 PDB: 1rqs_A 2bcw_B
Probab=24.29 E-value=76 Score=21.99 Aligned_cols=23 Identities=13% Similarity=0.016 Sum_probs=19.9
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHH
Q 030926 39 QKLERISDELLDLTKLERYDFAT 61 (169)
Q Consensus 39 ~kv~~Ivd~I~~LTLlE~seLv~ 61 (169)
-+|-..+..|-+|.|.|+.+||+
T Consensus 20 i~vIK~VR~itgLgLkEAK~lVe 42 (74)
T 1ctf_A 20 VAVIKAVRGATGLGLKEAKDLVE 42 (74)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHH
Confidence 34557889999999999999998
No 33
>3j21_L 50S ribosomal protein L15P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.44 E-value=50 Score=25.25 Aligned_cols=26 Identities=38% Similarity=0.434 Sum_probs=17.7
Q ss_pred cchhhhcC-CCHHHHHHHHHHHHHcCcEEEe
Q 030926 139 APAVIKKG-VTKEEADKIVEKLKELNAIVVL 168 (169)
Q Consensus 139 ~P~~IKe~-vsKeEAEeik~kLe~aGA~Vei 168 (169)
.|-+|+.. +|+ ..++++|++|++|++
T Consensus 120 ~~v~Vka~~fS~----~A~ekIeaaGG~v~~ 146 (147)
T 3j21_L 120 RPLVIKARAFSP----KAEEKIKAAGGEAVL 146 (147)
T ss_dssp SCEEEEESEECH----HHHHHHHHTTCEEEE
T ss_pred cCEEEEEEecCH----HHHHHHHHcCCEEEe
Confidence 36666643 454 345688999999986
No 34
>1l0i_A Acyl carrier protein; acyl chain binding, fatty acid biosynt lipid transport; HET: PSR; 1.20A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ny7_B* 2fhs_C 1l0h_A* 1acp_A 1t8k_A 2fac_A* 2fad_A* 2fae_A* 2k92_A 2k93_A 2k94_A 2l0q_A
Probab=23.42 E-value=74 Score=19.98 Aligned_cols=22 Identities=5% Similarity=0.122 Sum_probs=19.2
Q ss_pred cCCHHHHHHHHHHHHHHhCCCC
Q 030926 50 DLTKLERYDFATLFGCKLGLDR 71 (169)
Q Consensus 50 ~LTLlE~seLv~~leekfgv~~ 71 (169)
.++=+.+.+|+..|+++||+.-
T Consensus 34 G~DSl~~~el~~~le~~fgi~i 55 (78)
T 1l0i_A 34 GADSLDTVELVMALEEEFDTEI 55 (78)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHHhCCCC
Confidence 5677889999999999999973
No 35
>1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus subtilis} SCOP: a.28.1.1 PDB: 2x2b_A* 1hy8_A
Probab=23.05 E-value=76 Score=20.08 Aligned_cols=23 Identities=9% Similarity=0.170 Sum_probs=20.0
Q ss_pred hcCCHHHHHHHHHHHHHHhCCCC
Q 030926 49 LDLTKLERYDFATLFGCKLGLDR 71 (169)
Q Consensus 49 ~~LTLlE~seLv~~leekfgv~~ 71 (169)
..+.=+.+.+|+..|+++||+.-
T Consensus 37 lG~DSl~~vel~~~le~~fgi~i 59 (81)
T 1f80_D 37 LGADXLDVVELVMELEDEFDMEI 59 (81)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCCC
T ss_pred cCCcHHHHHHHHHHHHHHhCCcc
Confidence 46778899999999999999973
No 36
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=22.75 E-value=80 Score=23.41 Aligned_cols=26 Identities=19% Similarity=0.387 Sum_probs=20.4
Q ss_pred chhHHHHHHHHHhhCCChhHHHHHHhh
Q 030926 112 ATKIKIIKEVKTFTGLGLKESKDLVEK 138 (169)
Q Consensus 112 ~kKi~vIK~VR~it~LgLkEaK~lVe~ 138 (169)
-.++..|+.+|+ .|++|+|.|.+++.
T Consensus 60 l~~l~~I~~lr~-~G~sL~eIk~~l~~ 85 (148)
T 3gpv_A 60 LKYLEMILCLKN-TGMPIQKIKQFIDW 85 (148)
T ss_dssp HHHHHHHHHHHT-TTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHh
Confidence 356677777765 69999999999984
No 37
>2lbf_A 60S acidic ribosomal protein P1; ribosome, stalk, P1/P2; NMR {Homo sapiens}
Probab=22.26 E-value=30 Score=23.34 Aligned_cols=16 Identities=31% Similarity=0.243 Sum_probs=14.1
Q ss_pred HHHHHHHHHHcCcEEE
Q 030926 152 ADKIVEKLKELNAIVV 167 (169)
Q Consensus 152 AEeik~kLe~aGA~Ve 167 (169)
+++|++.|+++|.+|+
T Consensus 25 a~~I~~il~AaGveve 40 (69)
T 2lbf_A 25 EDKINALIKAAGVNVE 40 (69)
T ss_dssp HHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHcCCCcc
Confidence 7889999999998875
No 38
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*
Probab=22.17 E-value=1e+02 Score=24.85 Aligned_cols=40 Identities=15% Similarity=0.086 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhCCChhHHHHHHhhcchhhhcC--CCHHHHHHHHHHHHHcC-cEE
Q 030926 115 IKIIKEVKTFTGLGLKESKDLVEKAPAVIKKG--VTKEEADKIVEKLKELN-AIV 166 (169)
Q Consensus 115 i~vIK~VR~it~LgLkEaK~lVe~~P~~IKe~--vsKeEAEeik~kLe~aG-A~V 166 (169)
..+|+.||+.+ +.|-.+|-. ++.++..++.+.++++| +..
T Consensus 149 ~~ii~~vr~~~------------~~Pv~vK~~~~~~~~~~~~~a~~~~~aG~~d~ 191 (314)
T 2e6f_A 149 RTYLQQVSLAY------------GLPFGVKMPPYFDIAHFDTAAAVLNEFPLVKF 191 (314)
T ss_dssp HHHHHHHHHHH------------CSCEEEEECCCCCHHHHHHHHHHHHTCTTEEE
T ss_pred HHHHHHHHHhc------------CCCEEEEECCCCCHHHHHHHHHHHHhcCCceE
Confidence 45677776543 468887744 67889999999999999 763
No 39
>2lol_A ACP, acyl carrier protein; lipid transport; NMR {Rickettsia prowazekii str}
Probab=21.87 E-value=83 Score=19.89 Aligned_cols=23 Identities=17% Similarity=0.351 Sum_probs=20.1
Q ss_pred hcCCHHHHHHHHHHHHHHhCCCC
Q 030926 49 LDLTKLERYDFATLFGCKLGLDR 71 (169)
Q Consensus 49 ~~LTLlE~seLv~~leekfgv~~ 71 (169)
..++=+.+.+|+..|+++||+.-
T Consensus 36 lG~DSl~~~el~~~le~~fgi~i 58 (81)
T 2lol_A 36 LKADSLDTVELMMAIEVEYGIDI 58 (81)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCCC
T ss_pred cCCcHHHHHHHHHHHHHHHCCCC
Confidence 46788889999999999999973
No 40
>3gzm_A Acyl carrier protein; helix bundle, phosphopantetheine, fatty acid biosynthesis, L synthesis, transit peptide, biosynthetic protein; HET: PNS; 1.80A {Plasmodium falciparum} SCOP: a.28.1.0 PDB: 3gzl_A* 2fq0_A* 2fq2_A*
Probab=21.65 E-value=83 Score=20.14 Aligned_cols=22 Identities=9% Similarity=0.119 Sum_probs=19.6
Q ss_pred cCCHHHHHHHHHHHHHHhCCCC
Q 030926 50 DLTKLERYDFATLFGCKLGLDR 71 (169)
Q Consensus 50 ~LTLlE~seLv~~leekfgv~~ 71 (169)
++.=+.+.+|+..|+++||+.-
T Consensus 36 g~DSl~~vel~~~le~~fgi~i 57 (81)
T 3gzm_A 36 GADSLDLVELIMALEEKFNVTI 57 (81)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHHHCCCc
Confidence 6778889999999999999973
No 41
>2amw_A Hypothetical protein NE2163; all helical protein, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=21.59 E-value=65 Score=20.85 Aligned_cols=20 Identities=5% Similarity=0.024 Sum_probs=17.7
Q ss_pred CHHHHHHHHHHHHHHhCCCC
Q 030926 52 TKLERYDFATLFGCKLGLDR 71 (169)
Q Consensus 52 TLlE~seLv~~leekfgv~~ 71 (169)
.=+.+.+|+-.||++|||.-
T Consensus 38 DSl~~~elv~~lE~~fgi~i 57 (83)
T 2amw_A 38 DSMAVVNVITALEEYFDFSV 57 (83)
T ss_dssp THHHHHHHHHHHHHHTTCCC
T ss_pred CHHHHHHHHHHHHHHhCCee
Confidence 66788999999999999974
No 42
>1x3o_A Acyl carrier protein; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 1.50A {Thermus thermophilus}
Probab=20.84 E-value=91 Score=19.44 Aligned_cols=21 Identities=14% Similarity=0.284 Sum_probs=18.6
Q ss_pred cCCHHHHHHHHHHHHHHhCCC
Q 030926 50 DLTKLERYDFATLFGCKLGLD 70 (169)
Q Consensus 50 ~LTLlE~seLv~~leekfgv~ 70 (169)
.++=+.+.+|+..|+++||+.
T Consensus 36 G~DSl~~~~l~~~le~~fgi~ 56 (80)
T 1x3o_A 36 GADSLDTVELIMGLEDEFGLE 56 (80)
T ss_dssp CCCHHHHHHHHHHHHHHHCCC
T ss_pred CccHHHHHHHHHHHHHHHCCC
Confidence 567788999999999999997
No 43
>2lbf_B 60S acidic ribosomal protein P2; ribosome, stalk, P1/P2; NMR {Homo sapiens} PDB: 2w1o_A
Probab=20.71 E-value=36 Score=23.10 Aligned_cols=16 Identities=19% Similarity=0.115 Sum_probs=14.2
Q ss_pred HHHHHHHHHHcCcEEE
Q 030926 152 ADKIVEKLKELNAIVV 167 (169)
Q Consensus 152 AEeik~kLe~aGA~Ve 167 (169)
+++|++.|+++|.+|+
T Consensus 21 a~~I~~il~aaGvevd 36 (70)
T 2lbf_B 21 AKDIKKILDSVGIEAD 36 (70)
T ss_dssp HHHHHHHHHTTTCCCC
T ss_pred HHHHHHHHHHcCCCcc
Confidence 7889999999999875
No 44
>2qnw_A Acyl carrier protein; malaria, SGC, structural genomics CONS fatty acid biosynthesis, lipid synthesis, phosphopantethein transit peptide; 1.90A {Toxoplasma gondii}
Probab=20.31 E-value=92 Score=19.90 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=19.8
Q ss_pred hcCCHHHHHHHHHHHHHHhCCCC
Q 030926 49 LDLTKLERYDFATLFGCKLGLDR 71 (169)
Q Consensus 49 ~~LTLlE~seLv~~leekfgv~~ 71 (169)
..+.=+.+.+|+..||++||+.-
T Consensus 37 lG~DSl~~vel~~~le~~fgi~i 59 (82)
T 2qnw_A 37 LDADSLDSVELVMAFEEKFGVSI 59 (82)
T ss_dssp SCCCHHHHHHHHHHHHHHHTCCC
T ss_pred cCCcHHHHHHHHHHHHHHHCCcC
Confidence 45777889999999999999973
No 45
>2ehs_A ACP, acyl carrier protein; lipid transport, structural genomics, NPPSFA, national proje protein structural and functional analyses; 1.30A {Aquifex aeolicus} PDB: 2eht_A
Probab=20.06 E-value=97 Score=19.08 Aligned_cols=21 Identities=14% Similarity=0.370 Sum_probs=18.6
Q ss_pred cCCHHHHHHHHHHHHHHhCCC
Q 030926 50 DLTKLERYDFATLFGCKLGLD 70 (169)
Q Consensus 50 ~LTLlE~seLv~~leekfgv~ 70 (169)
.++=+.+.+|+..|+++||++
T Consensus 32 G~DSl~~~~l~~~le~~~gi~ 52 (77)
T 2ehs_A 32 GADSLDVVELIMAFEEEFGIE 52 (77)
T ss_dssp CCCHHHHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHHhCCc
Confidence 567788999999999999997
No 46
>2l4b_A Acyl carrier protein; infectious disease, human granulocytic anaplasmosis, ssgcid, structural genomics; NMR {Anaplasma phagocytophilum}
Probab=20.01 E-value=92 Score=20.23 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=19.1
Q ss_pred cCCHHHHHHHHHHHHHHhCCCC
Q 030926 50 DLTKLERYDFATLFGCKLGLDR 71 (169)
Q Consensus 50 ~LTLlE~seLv~~leekfgv~~ 71 (169)
.+.=+.+.+|+..||++||+.-
T Consensus 42 glDSl~~vel~~~lE~~fgi~i 63 (88)
T 2l4b_A 42 NLDSLDFVDLIMSLEERFSLEI 63 (88)
T ss_dssp TCCHHHHHHHHHHHHHHTTCCC
T ss_pred CCcHHHHHHHHHHHHHHHCCCc
Confidence 5667889999999999999973
Done!