Query 030926
Match_columns 169
No_of_seqs 117 out of 1136
Neff 4.5
Searched_HMMs 13730
Date Mon Mar 25 10:17:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030926.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030926hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2zjq51 d.45.1.1 (5:52-122) Ri 100.0 5.5E-29 4E-33 174.6 7.8 70 97-168 1-70 (71)
2 d1ctfa_ d.45.1.1 (A:) Ribosoma 99.9 2.4E-28 1.7E-32 170.1 7.1 67 101-168 1-67 (68)
3 d1dd3a2 d.45.1.1 (A:58-128) Ri 99.9 2.9E-27 2.1E-31 165.8 7.4 67 101-168 1-70 (71)
4 d1dd3a1 a.108.1.1 (A:1-57) Rib 98.9 7.5E-12 5.5E-16 82.9 -4.1 36 41-76 3-38 (57)
5 d2gyc31 a.108.1.1 (3:2-48) Rib 98.4 5E-08 3.6E-12 62.0 2.0 35 41-75 3-37 (47)
6 d1zavu1 a.108.1.1 (U:1-30) Rib 98.0 2.4E-06 1.7E-10 49.1 3.6 29 40-68 2-30 (30)
7 d1aipc1 a.5.2.2 (C:2-53) Elong 93.2 0.038 2.8E-06 34.9 3.4 37 114-156 2-38 (52)
8 d1efub3 a.5.2.2 (B:1-54) Elong 90.4 0.12 8.6E-06 32.8 3.4 35 115-155 5-39 (54)
9 d1xb2b1 a.5.2.2 (B:56-111) Elo 89.3 0.16 1.2E-05 32.4 3.4 35 115-155 5-39 (56)
10 d1jmsa3 a.60.12.1 (A:243-302) 54.2 4.9 0.00036 25.1 3.0 28 112-139 1-28 (60)
11 d1o4ua1 c.1.17.1 (A:104-273) Q 51.5 4.6 0.00034 29.8 2.9 42 128-169 87-129 (170)
12 d1p71a_ a.55.1.1 (A:) HU prote 46.3 4.6 0.00034 26.6 1.9 34 113-146 2-35 (94)
13 d1mula_ a.55.1.1 (A:) HU prote 43.8 5.3 0.00038 26.1 1.9 35 113-147 2-36 (90)
14 d1b8za_ a.55.1.1 (A:) HU prote 42.4 5.7 0.00041 25.9 1.9 35 113-147 2-36 (90)
15 d1huua_ a.55.1.1 (A:) HU prote 42.0 5.8 0.00042 25.9 1.9 34 113-146 2-35 (90)
16 d2o97b1 a.55.1.1 (B:1-90) HU p 41.3 2.4 0.00017 27.9 -0.2 35 113-147 2-36 (90)
17 d1vqol1 c.12.1.1 (L:1-150) Rib 37.5 9.8 0.00071 26.5 2.7 16 153-168 127-142 (150)
18 d1r8da_ a.6.1.3 (A:) Multidrug 37.0 13 0.00096 24.3 3.2 27 112-139 46-72 (109)
19 d1r6oc1 d.45.1.2 (C:20-106) Ad 36.3 37 0.0027 22.0 5.4 63 99-161 6-71 (87)
20 d2bcqa2 a.60.12.1 (A:329-385) 35.8 14 0.0011 22.7 3.0 27 113-139 2-28 (57)
21 d1in0a2 d.58.49.1 (A:90-163) H 33.8 11 0.00077 24.7 2.1 27 141-167 7-33 (74)
22 d1k6ya1 a.4.10.1 (A:1-46) N-te 33.0 19 0.0014 21.3 3.1 24 118-141 19-42 (46)
23 d1owfa_ a.55.1.1 (A:) Integrat 32.8 10 0.00073 24.9 1.9 33 114-146 4-36 (96)
24 d2gy9m1 a.156.1.1 (M:1-114) Ri 32.5 23 0.0017 24.0 3.9 52 108-161 7-61 (114)
25 d2uubm1 a.156.1.1 (M:2-126) Ri 26.6 38 0.0028 23.2 4.3 46 116-161 13-61 (125)
26 d1seda_ a.219.1.1 (A:) Hypothe 25.0 21 0.0015 24.9 2.6 21 142-162 32-52 (112)
27 d1qpoa1 c.1.17.1 (A:117-285) Q 24.5 25 0.0018 25.5 3.0 42 128-169 88-130 (169)
28 d1e0ea_ a.4.10.1 (A:) N-termin 23.4 30 0.0022 20.3 2.7 24 118-141 19-42 (46)
29 d1r8ea1 a.6.1.3 (A:3-120) Tran 23.2 29 0.0021 22.8 3.0 29 112-141 48-76 (118)
30 d1ctfa_ d.45.1.1 (A:) Ribosoma 22.5 42 0.003 21.3 3.5 22 40-61 15-36 (68)
31 d2fgca2 d.58.18.6 (A:27-104) A 21.7 11 0.00079 24.5 0.4 48 4-51 20-68 (78)
32 d2jq4a1 a.28.1.1 (A:1-83) Hypo 21.0 42 0.003 20.6 3.3 22 50-71 32-53 (83)
33 d1cdza_ c.15.1.1 (A:) DNA-repa 20.2 14 0.0011 22.9 0.8 26 142-167 12-37 (96)
34 d1exea_ a.55.1.1 (A:) Transcri 20.2 8.9 0.00065 25.4 -0.3 34 113-146 2-35 (99)
No 1
>d2zjq51 d.45.1.1 (5:52-122) Ribosomal protein L7/12, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]}
Probab=99.95 E-value=5.5e-29 Score=174.61 Aligned_cols=70 Identities=51% Similarity=0.724 Sum_probs=67.0
Q ss_pred hhccceeEEEeecCcchhHHHHHHHHHhhCCChhHHHHHHhhcchhhhcCCCHHHHHHHHHHHHHcCcEEEe
Q 030926 97 AEKTAFDVKLEKYDQATKIKIIKEVKTFTGLGLKESKDLVEKAPAVIKKGVTKEEADKIVEKLKELNAIVVL 168 (169)
Q Consensus 97 ~EKt~fdV~L~~~~~~kKi~vIK~VR~it~LgLkEaK~lVe~~P~~IKe~vsKeEAEeik~kLe~aGA~Vei 168 (169)
+|||+|||+|+++| ++||+|||+||++|||||+|||+|||+ |.+||+|++|+|||++|++|+++||+|+|
T Consensus 1 EEKt~F~V~L~~~~-~~Ki~vIK~VR~it~LgLkeAK~lVe~-p~~ike~vsKeeAE~~k~~Le~aGA~Vel 70 (71)
T d2zjq51 1 EEKTEFDVVLIDAG-ASKINVIKEIRGITGLGLKEAKDMSEK-GGVLKEGVAKDEAEKMKAQLEAAGARVEL 70 (71)
T ss_pred CCCcEEEEEEeeCC-cchhhHHHHHHHhcCCCHHHHHhhccC-chHhhcCCCHHHHHHHHHHHHHcCCEEEe
Confidence 48999999999997 589999999999999999999999998 77999999999999999999999999997
No 2
>d1ctfa_ d.45.1.1 (A:) Ribosomal protein L7/12, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=99.95 E-value=2.4e-28 Score=170.12 Aligned_cols=67 Identities=49% Similarity=0.724 Sum_probs=65.1
Q ss_pred ceeEEEeecCcchhHHHHHHHHHhhCCChhHHHHHHhhcchhhhcCCCHHHHHHHHHHHHHcCcEEEe
Q 030926 101 AFDVKLEKYDQATKIKIIKEVKTFTGLGLKESKDLVEKAPAVIKKGVTKEEADKIVEKLKELNAIVVL 168 (169)
Q Consensus 101 ~fdV~L~~~~~~kKi~vIK~VR~it~LgLkEaK~lVe~~P~~IKe~vsKeEAEeik~kLe~aGA~Vei 168 (169)
+|||+|+++| ++||+|||+||++|||||+|||+|||++|++||+|+||+|||++|++|+++||+|+|
T Consensus 1 EF~V~L~~~~-~~Ki~vIK~VR~it~lgLkEAK~lVe~~P~~ike~vskeeAE~ik~~Le~aGA~Vel 67 (68)
T d1ctfa_ 1 EFDVILKAAG-ANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEV 67 (68)
T ss_dssp CEEEEEEECG-GGHHHHHHHHHHHHCCCHHHHHHHHHTCSEEEEEEECHHHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEccCC-cchhHHHHHHHHhcCCCHHHHHHHHHcCCHHHHcCCCHHHHHHHHHHHHHcCCEEEe
Confidence 6999999997 589999999999999999999999999999999999999999999999999999997
No 3
>d1dd3a2 d.45.1.1 (A:58-128) Ribosomal protein L7/12, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=99.94 E-value=2.9e-27 Score=165.77 Aligned_cols=67 Identities=58% Similarity=0.809 Sum_probs=64.1
Q ss_pred ceeEEEeecCcchhHHHHHHHHHhhCCChhHHHHHHhhcch---hhhcCCCHHHHHHHHHHHHHcCcEEEe
Q 030926 101 AFDVKLEKYDQATKIKIIKEVKTFTGLGLKESKDLVEKAPA---VIKKGVTKEEADKIVEKLKELNAIVVL 168 (169)
Q Consensus 101 ~fdV~L~~~~~~kKi~vIK~VR~it~LgLkEaK~lVe~~P~---~IKe~vsKeEAEeik~kLe~aGA~Vei 168 (169)
+|||+|++|+ ++||+|||+||++|||||+|||+|||++|+ +||+|++|+|||++|++|+++||+|+|
T Consensus 1 EF~V~L~~~~-~~KI~vIK~VR~it~lgLkEAK~lVe~~p~~~~vike~v~KeeAE~~K~~Le~aGA~V~l 70 (71)
T d1dd3a2 1 EFDVVLKSFG-QNKIQVIKVVREITGLGLKEAKDLVEKAGSPDAVIKSGVSKEEAEEIKKKLEEAGAEVEL 70 (71)
T ss_dssp SEEEEEEECT-TCHHHHHHHHHHHHCCCHHHHHHHHTTTTSTTCEEEEEECHHHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEEcccC-ccchhHHHHHHHhcCCCHHHHHHHHHhcCCchHHHhcCCCHHHHHHHHHHHHHcCCEEEe
Confidence 6999999995 689999999999999999999999998875 899999999999999999999999987
No 4
>d1dd3a1 a.108.1.1 (A:1-57) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Thermotoga maritima [TaxId: 2336]}
Probab=98.92 E-value=7.5e-12 Score=82.94 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=33.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCCCCC
Q 030926 41 LERISDELLDLTKLERYDFATLFGCKLGLDRFGPVV 76 (169)
Q Consensus 41 v~~Ivd~I~~LTLlE~seLv~~leekfgv~~~~~~~ 76 (169)
+++|++.|.+||++|++||++.||++|||++++|++
T Consensus 3 ~e~iie~I~~~tv~El~ELvKalEekfGVsAaaPV~ 38 (57)
T d1dd3a1 3 IDEIIEAIEKLTVSELAELVKKLEDKFGVTAAAPVA 38 (57)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhCcccchhHH
Confidence 689999999999999999999999999999877654
No 5
>d2gyc31 a.108.1.1 (3:2-48) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Escherichia coli [TaxId: 562]}
Probab=98.38 E-value=5e-08 Score=62.01 Aligned_cols=35 Identities=11% Similarity=0.284 Sum_probs=31.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCCCCC
Q 030926 41 LERISDELLDLTKLERYDFATLFGCKLGLDRFGPV 75 (169)
Q Consensus 41 v~~Ivd~I~~LTLlE~seLv~~leekfgv~~~~~~ 75 (169)
-++|++.|.+|+++|+.||++.+|+||||++.++.
T Consensus 3 ke~Ileaia~MSVmdvveLi~amEEKFGVsaaa~v 37 (47)
T d2gyc31 3 KDQIIEAVAAMSVMDVVELISAMEEKFGVSAAAAV 37 (47)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHTCTTTTHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHhCcchhccc
Confidence 37899999999999999999999999999976543
No 6
>d1zavu1 a.108.1.1 (U:1-30) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Thermotoga maritima [TaxId: 2336]}
Probab=98.01 E-value=2.4e-06 Score=49.11 Aligned_cols=29 Identities=21% Similarity=0.299 Sum_probs=27.7
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHhC
Q 030926 40 KLERISDELLDLTKLERYDFATLFGCKLG 68 (169)
Q Consensus 40 kv~~Ivd~I~~LTLlE~seLv~~leekfg 68 (169)
.+++|++.|..||+-|+++||+.|+++||
T Consensus 2 ~~eeiv~aiekltvaelaelvk~ledkfg 30 (30)
T d1zavu1 2 TIDEIIEAIEKLTVSELAELVKKLEDKFG 30 (30)
T ss_dssp CHHHHHHHHHHSBHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhHHHHHHHHHHHHhhcC
Confidence 47899999999999999999999999998
No 7
>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=93.19 E-value=0.038 Score=34.93 Aligned_cols=37 Identities=30% Similarity=0.557 Sum_probs=29.3
Q ss_pred hHHHHHHHHHhhCCChhHHHHHHhhcchhhhcCCCHHHHHHHH
Q 030926 114 KIKIIKEVKTFTGLGLKESKDLVEKAPAVIKKGVTKEEADKIV 156 (169)
Q Consensus 114 Ki~vIK~VR~it~LgLkEaK~lVe~~P~~IKe~vsKeEAEeik 156 (169)
++..||.+|+.||.|+.+.|+.++.. |-.-|.|.++-
T Consensus 2 ~~elvK~LR~~Tga~~~dcKkAL~e~------~gD~ekA~e~L 38 (52)
T d1aipc1 2 QMELIKKLREATGAGMMDVKRALEDA------GWDEEKAVQLL 38 (52)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHT------TTCHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHc------CCCHHHHHHHH
Confidence 68899999999999999999988754 44555565553
No 8
>d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=90.41 E-value=0.12 Score=32.79 Aligned_cols=35 Identities=26% Similarity=0.311 Sum_probs=27.0
Q ss_pred HHHHHHHHHhhCCChhHHHHHHhhcchhhhcCCCHHHHHHH
Q 030926 115 IKIIKEVKTFTGLGLKESKDLVEKAPAVIKKGVTKEEADKI 155 (169)
Q Consensus 115 i~vIK~VR~it~LgLkEaK~lVe~~P~~IKe~vsKeEAEei 155 (169)
...||.+|+.||.|+++.|+.++.. +-..|.|.++
T Consensus 5 ~~~iK~LR~~Tgag~~dCKkAL~e~------~gD~ekA~e~ 39 (54)
T d1efub3 5 ASLVKELRERTGAGMMDCKKALTEA------NGDIELAIEN 39 (54)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHT------TTCHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHc------CCCHHHHHHH
Confidence 4789999999999999999987754 3444555544
No 9
>d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}
Probab=89.34 E-value=0.16 Score=32.39 Aligned_cols=35 Identities=17% Similarity=0.305 Sum_probs=27.1
Q ss_pred HHHHHHHHHhhCCChhHHHHHHhhcchhhhcCCCHHHHHHH
Q 030926 115 IKIIKEVKTFTGLGLKESKDLVEKAPAVIKKGVTKEEADKI 155 (169)
Q Consensus 115 i~vIK~VR~it~LgLkEaK~lVe~~P~~IKe~vsKeEAEei 155 (169)
..+||.+|+.||.|+.+.|+.++.. |-..|.|.++
T Consensus 5 ~~lvk~LRe~Tga~~~dcKkAL~e~------~gD~ekA~e~ 39 (56)
T d1xb2b1 5 KELLMKLRRKTGYSFINCKKALETC------GGDLKQAESW 39 (56)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHT------TTCHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHc------CCCHHHHHHH
Confidence 5789999999999999999988754 3344555444
No 10
>d1jmsa3 a.60.12.1 (A:243-302) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=54.16 E-value=4.9 Score=25.14 Aligned_cols=28 Identities=21% Similarity=0.332 Sum_probs=24.7
Q ss_pred chhHHHHHHHHHhhCCChhHHHHHHhhc
Q 030926 112 ATKIKIIKEVKTFTGLGLKESKDLVEKA 139 (169)
Q Consensus 112 ~kKi~vIK~VR~it~LgLkEaK~lVe~~ 139 (169)
|.|.+.+++.-.|.|.|.+-|+++++.-
T Consensus 1 Der~~~l~~f~~I~GvGp~~A~~l~~~G 28 (60)
T d1jmsa3 1 DERYKSFKLFTSVFGVGLKTAEKWFRMG 28 (60)
T ss_dssp CHHHHHHHHHHTSTTCCHHHHHHHHHTT
T ss_pred ChHhHHHHHHhccccccHHHHHHHHHhC
Confidence 4688999999999999999999998863
No 11
>d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=51.45 E-value=4.6 Score=29.80 Aligned_cols=42 Identities=26% Similarity=0.468 Sum_probs=34.7
Q ss_pred ChhHHHHHHhhcc-hhhhcCCCHHHHHHHHHHHHHcCcEEEeC
Q 030926 128 GLKESKDLVEKAP-AVIKKGVTKEEADKIVEKLKELNAIVVLE 169 (169)
Q Consensus 128 gLkEaK~lVe~~P-~~IKe~vsKeEAEeik~kLe~aGA~VeiE 169 (169)
+|.|+++.++.-+ -++.+|++.|+..++.+.++..+-.+.||
T Consensus 87 ~~~e~~~a~~~g~d~i~LDn~~pe~~k~~~~~lk~~~~~i~lE 129 (170)
T d1o4ua1 87 NLEDALRAVEAGADIVMLDNLSPEEVKDISRRIKDINPNVIVE 129 (170)
T ss_dssp SHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHHHHHCTTSEEE
T ss_pred cHHHHHHHHhcCccEEEEcCcChhhHhHHHHHHHhhCCcEEEE
Confidence 4678888888644 47889999999999999999988877765
No 12
>d1p71a_ a.55.1.1 (A:) HU protein {Anabaena sp. [TaxId: 1167]}
Probab=46.27 E-value=4.6 Score=26.55 Aligned_cols=34 Identities=15% Similarity=0.188 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHhhCCChhHHHHHHhhcchhhhcC
Q 030926 113 TKIKIIKEVKTFTGLGLKESKDLVEKAPAVIKKG 146 (169)
Q Consensus 113 kKi~vIK~VR~it~LgLkEaK~lVe~~P~~IKe~ 146 (169)
+|-.+|+.|.+-+||.-++++.+|+.+=.+|.+.
T Consensus 2 ~K~eli~~ia~~~~ls~~~~~~~v~~~~~~i~~~ 35 (94)
T d1p71a_ 2 NKGELVDAVAEKASVTKKQADAVLTAALETIIEA 35 (94)
T ss_dssp BHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhCcCHHHHHHHHHHHHHHHHHH
Confidence 4668999999999999999999999887666653
No 13
>d1mula_ a.55.1.1 (A:) HU protein {Escherichia coli [TaxId: 562]}
Probab=43.82 E-value=5.3 Score=26.14 Aligned_cols=35 Identities=20% Similarity=0.285 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHhhCCChhHHHHHHhhcchhhhcCC
Q 030926 113 TKIKIIKEVKTFTGLGLKESKDLVEKAPAVIKKGV 147 (169)
Q Consensus 113 kKi~vIK~VR~it~LgLkEaK~lVe~~P~~IKe~v 147 (169)
+|-.+|+.|-+-+||.-++++++|+.+-.+|.+.+
T Consensus 2 ~K~eli~~ia~~~~ltk~~~~~~v~~~~~~i~~~L 36 (90)
T d1mula_ 2 NKTQLIDVIAEKAELSKTQAKAALESTLAAITESL 36 (90)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhCcCHHHHHHHHHHHHHHHHHHH
Confidence 46689999999999999999999999877766543
No 14
>d1b8za_ a.55.1.1 (A:) HU protein {Thermotoga maritima [TaxId: 2336]}
Probab=42.40 E-value=5.7 Score=25.86 Aligned_cols=35 Identities=20% Similarity=0.279 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHhhCCChhHHHHHHhhcchhhhcCC
Q 030926 113 TKIKIIKEVKTFTGLGLKESKDLVEKAPAVIKKGV 147 (169)
Q Consensus 113 kKi~vIK~VR~it~LgLkEaK~lVe~~P~~IKe~v 147 (169)
+|-.+|+.|-+-+|++-++++.+||.+=.+|.+.+
T Consensus 2 nK~eli~~ia~~~~~s~~~~~~~~~~~~~~i~~~L 36 (90)
T d1b8za_ 2 NKKELIDRVAKKAGAKKKDVKLILDTILETITEAL 36 (90)
T ss_dssp CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHH
Confidence 46689999999999999999999999877776543
No 15
>d1huua_ a.55.1.1 (A:) HU protein {Bacillus stearothermophilus [TaxId: 1422]}
Probab=42.01 E-value=5.8 Score=25.86 Aligned_cols=34 Identities=24% Similarity=0.353 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHhhCCChhHHHHHHhhcchhhhcC
Q 030926 113 TKIKIIKEVKTFTGLGLKESKDLVEKAPAVIKKG 146 (169)
Q Consensus 113 kKi~vIK~VR~it~LgLkEaK~lVe~~P~~IKe~ 146 (169)
+|-++|+.|-+-+|+.-++++.+++.+-.+|.+.
T Consensus 2 tK~dli~~ia~~~~~~~~~~~~~~~~~~~~i~~~ 35 (90)
T d1huua_ 2 NKTELINAVAETSGLSKKDATKAVDAVFDSITEA 35 (90)
T ss_dssp CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHH
Confidence 4668999999999999999999999987776653
No 16
>d2o97b1 a.55.1.1 (B:1-90) HU protein {Escherichia coli, beta-isoform [TaxId: 562]}
Probab=41.30 E-value=2.4 Score=27.89 Aligned_cols=35 Identities=9% Similarity=0.179 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHhhCCChhHHHHHHhhcchhhhcCC
Q 030926 113 TKIKIIKEVKTFTGLGLKESKDLVEKAPAVIKKGV 147 (169)
Q Consensus 113 kKi~vIK~VR~it~LgLkEaK~lVe~~P~~IKe~v 147 (169)
+|-.+|+.|-+-+||.-++++.+|+.+=.+|.+.+
T Consensus 2 ~K~eLi~~ia~~~~l~~~~~~~~v~~~~~~i~~~L 36 (90)
T d2o97b1 2 NKSQLIDKIAAGADISKAAAGRALDAIIASVTESL 36 (90)
T ss_dssp BHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHH
Confidence 46689999998899999999999999877776543
No 17
>d1vqol1 c.12.1.1 (L:1-150) Ribosomal protein L15 (L15p) {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=37.47 E-value=9.8 Score=26.55 Aligned_cols=16 Identities=25% Similarity=0.235 Sum_probs=13.5
Q ss_pred HHHHHHHHHcCcEEEe
Q 030926 153 DKIVEKLKELNAIVVL 168 (169)
Q Consensus 153 Eeik~kLe~aGA~Vei 168 (169)
+..++++|+||++|+|
T Consensus 127 ~sA~ekIe~aGG~v~l 142 (150)
T d1vqol1 127 EGAREKVEGAGGSVEL 142 (150)
T ss_dssp HHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHcCCEEEE
Confidence 4567889999999987
No 18
>d1r8da_ a.6.1.3 (A:) Multidrug transporter activator MtaN {Bacillus subtilis [TaxId: 1423]}
Probab=37.02 E-value=13 Score=24.29 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=22.2
Q ss_pred chhHHHHHHHHHhhCCChhHHHHHHhhc
Q 030926 112 ATKIKIIKEVKTFTGLGLKESKDLVEKA 139 (169)
Q Consensus 112 ~kKi~vIK~VR~it~LgLkEaK~lVe~~ 139 (169)
-.++..|+.+|+ .|++|.|.|++++.-
T Consensus 46 ~~~l~~I~~lr~-~G~sl~eI~~~l~~~ 72 (109)
T d1r8da_ 46 LERLQQILFFKE-IGFRLDEIKEMLDHP 72 (109)
T ss_dssp HHHHHHHHHHHH-TTCCHHHHHHHHHCT
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHhcc
Confidence 467778888775 799999999999864
No 19
>d1r6oc1 d.45.1.2 (C:20-106) Adaptor protein ClpS (YljA) {Escherichia coli [TaxId: 562]}
Probab=36.35 E-value=37 Score=21.98 Aligned_cols=63 Identities=17% Similarity=0.182 Sum_probs=46.6
Q ss_pred ccceeEEEeecCcchhHHHHHHHHHhhCCChhHHHHHHhhcc---hhhhcCCCHHHHHHHHHHHHH
Q 030926 99 KTAFDVKLEKYDQATKIKIIKEVKTFTGLGLKESKDLVEKAP---AVIKKGVTKEEADKIVEKLKE 161 (169)
Q Consensus 99 Kt~fdV~L~~~~~~kKi~vIK~VR~it~LgLkEaK~lVe~~P---~~IKe~vsKeEAEeik~kLe~ 161 (169)
...|.|+|-+-|-...=-||..++.+.+++..+|..+.-.+= +-+---.++|.||--..++..
T Consensus 6 P~~y~ViL~NDd~~t~e~Vi~~L~~v~~~~~~~A~~~~~~vH~~G~avv~~~~~E~AE~k~~~~~~ 71 (87)
T d1r6oc1 6 PSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNK 71 (87)
T ss_dssp CCEEEEEEECCSSSCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSEEEEEEEEHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHCcCHHHHHHHHHHhccCCcEEEEEecHHHHHHHHHHHHH
Confidence 356999997755556778999999999999999999876542 222223678988876666633
No 20
>d2bcqa2 a.60.12.1 (A:329-385) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.77 E-value=14 Score=22.67 Aligned_cols=27 Identities=11% Similarity=0.252 Sum_probs=23.8
Q ss_pred hhHHHHHHHHHhhCCChhHHHHHHhhc
Q 030926 113 TKIKIIKEVKTFTGLGLKESKDLVEKA 139 (169)
Q Consensus 113 kKi~vIK~VR~it~LgLkEaK~lVe~~ 139 (169)
.+.++|+..-.|.|.|.+-|+++++.-
T Consensus 2 e~~~~l~~ft~I~GvGp~~A~~l~~~G 28 (57)
T d2bcqa2 2 ESVPVLELFSNIWGAGTKTAQMWYQQG 28 (57)
T ss_dssp TTHHHHHHHHTSTTCCHHHHHHHHHTT
T ss_pred chhHHHHHHhccccccHHHHHHHHHhC
Confidence 467899999999999999999999853
No 21
>d1in0a2 d.58.49.1 (A:90-163) Hypothetical protein HI1034 {Haemophilus influenzae [TaxId: 727]}
Probab=33.82 E-value=11 Score=24.74 Aligned_cols=27 Identities=30% Similarity=0.383 Sum_probs=23.0
Q ss_pred hhhhcCCCHHHHHHHHHHHHHcCcEEE
Q 030926 141 AVIKKGVTKEEADKIVEKLKELNAIVV 167 (169)
Q Consensus 141 ~~IKe~vsKeEAEeik~kLe~aGA~Ve 167 (169)
..+++|+++|.|.+|.+.+++.+-+|.
T Consensus 7 i~l~~GI~~e~AKkI~k~IK~~k~KVq 33 (74)
T d1in0a2 7 IKLKQGIETEMAKKITKLVKDSKIKVQ 33 (74)
T ss_dssp EEECCSCCHHHHHHHHHHHHHHTCSEE
T ss_pred EEeecCcCHHHHHHHHHHHHhcCCcce
Confidence 358899999999999999998877653
No 22
>d1k6ya1 a.4.10.1 (A:1-46) N-terminal Zn binding domain of HIV integrase {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=33.00 E-value=19 Score=21.32 Aligned_cols=24 Identities=13% Similarity=0.092 Sum_probs=20.7
Q ss_pred HHHHHHhhCCChhHHHHHHhhcch
Q 030926 118 IKEVKTFTGLGLKESKDLVEKAPA 141 (169)
Q Consensus 118 IK~VR~it~LgLkEaK~lVe~~P~ 141 (169)
.+.++.-.||....||++|.++|.
T Consensus 19 ~~~L~~~F~ip~~vAr~IV~~C~~ 42 (46)
T d1k6ya1 19 WRAMASDFNLPPVVAKEIVASCDK 42 (46)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHCTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHH
Confidence 366788899999999999999985
No 23
>d1owfa_ a.55.1.1 (A:) Integration host factor alpha subunit (IHFA) {Escherichia coli [TaxId: 562]}
Probab=32.81 E-value=10 Score=24.85 Aligned_cols=33 Identities=24% Similarity=0.292 Sum_probs=28.2
Q ss_pred hHHHHHHHHHhhCCChhHHHHHHhhcchhhhcC
Q 030926 114 KIKIIKEVKTFTGLGLKESKDLVEKAPAVIKKG 146 (169)
Q Consensus 114 Ki~vIK~VR~it~LgLkEaK~lVe~~P~~IKe~ 146 (169)
|-.+|+.|-+-+|+.-++++.+++.+=..|.+.
T Consensus 4 K~eli~~ia~~~~lsk~~~~~~~~~~~~~i~~~ 36 (96)
T d1owfa_ 4 KAEMSEYLFDKLGLSKRDAKELVELFFEEIRRA 36 (96)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 668999999999999999999999887666543
No 24
>d2gy9m1 a.156.1.1 (M:1-114) Ribosomal protein S13 {Escherichia coli [TaxId: 562]}
Probab=32.49 E-value=23 Score=24.04 Aligned_cols=52 Identities=15% Similarity=0.296 Sum_probs=41.0
Q ss_pred ecCcchhHHHHHHHHHhhCCChhHHHHHHhhc---chhhhcCCCHHHHHHHHHHHHH
Q 030926 108 KYDQATKIKIIKEVKTFTGLGLKESKDLVEKA---PAVIKKGVTKEEADKIVEKLKE 161 (169)
Q Consensus 108 ~~~~~kKi~vIK~VR~it~LgLkEaK~lVe~~---P~~IKe~vsKeEAEeik~kLe~ 161 (169)
++|+ +| .|.-.+..|-|+|..-|+.+...+ |..--..++.+|-+.|.+.++.
T Consensus 7 dip~-~K-~v~~ALt~I~GIG~~~A~~Ic~~lgid~~~kv~~Lt~~qi~~l~~~i~~ 61 (114)
T d2gy9m1 7 NIPD-HK-HAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEVAK 61 (114)
T ss_dssp CCCC-SS-BHHHHHTTSSSCCHHHHHHHHHHHTCCTTSBTTSCCHHHHHHHHHHHHS
T ss_pred cCCC-CC-EEEEEeeeeeCcCHHHHHHHHHHcCCCcccccCcccHHHHHHHHHHHHh
Confidence 4553 33 566778888999999999999866 6666667999999999988764
No 25
>d2uubm1 a.156.1.1 (M:2-126) Ribosomal protein S13 {Thermus thermophilus [TaxId: 274]}
Probab=26.57 E-value=38 Score=23.23 Aligned_cols=46 Identities=24% Similarity=0.383 Sum_probs=38.7
Q ss_pred HHHHHHHHhhCCChhHHHHHHhhc---chhhhcCCCHHHHHHHHHHHHH
Q 030926 116 KIIKEVKTFTGLGLKESKDLVEKA---PAVIKKGVTKEEADKIVEKLKE 161 (169)
Q Consensus 116 ~vIK~VR~it~LgLkEaK~lVe~~---P~~IKe~vsKeEAEeik~kLe~ 161 (169)
.|.-.+..|-|+|..-|+.+...+ |..--..++.+|-+.|.+.++.
T Consensus 13 ~v~~ALt~I~GIG~~~A~~Ic~~lgId~~~k~~~Lt~~qi~~I~~~i~~ 61 (125)
T d2uubm1 13 RVDVALTYIYGIGKARAKEALEKTGINPATRVKDLTEAEVVRLREYVEN 61 (125)
T ss_dssp BHHHHHTTSTTCCHHHHHHHHHTTTCCTTSBGGGCCHHHHHHHHHHHHH
T ss_pred EEEEeeeeeeCcCHHHHHHHHHHcCCCcccccccccHHHHHHHHHHHhh
Confidence 566678888999999999999976 6666667999999999988764
No 26
>d1seda_ a.219.1.1 (A:) Hypothetical protein YhaI {Bacillus subtilis [TaxId: 1423]}
Probab=25.02 E-value=21 Score=24.93 Aligned_cols=21 Identities=38% Similarity=0.670 Sum_probs=17.7
Q ss_pred hhhcCCCHHHHHHHHHHHHHc
Q 030926 142 VIKKGVTKEEADKIVEKLKEL 162 (169)
Q Consensus 142 ~IKe~vsKeEAEeik~kLe~a 162 (169)
+|++|+||+|+|++-...++.
T Consensus 32 vI~k~lskeeve~~~~lCeeL 52 (112)
T d1seda_ 32 LIDKGLSKEEGEAVMRICDEL 52 (112)
T ss_dssp HHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHH
Confidence 799999999999987766653
No 27
>d1qpoa1 c.1.17.1 (A:117-285) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=24.51 E-value=25 Score=25.46 Aligned_cols=42 Identities=12% Similarity=0.211 Sum_probs=27.7
Q ss_pred ChhHHHHHHhh-cchhhhcCCCHHHHHHHHHHHHHcCcEEEeC
Q 030926 128 GLKESKDLVEK-APAVIKKGVTKEEADKIVEKLKELNAIVVLE 169 (169)
Q Consensus 128 gLkEaK~lVe~-~P~~IKe~vsKeEAEeik~kLe~aGA~VeiE 169 (169)
++.|+++.++. +-.++.+|++.++..++.+.+...+-++.||
T Consensus 88 s~~q~~~a~~~~~diImLDN~sp~~~k~~v~~~~~~~~~i~lE 130 (169)
T d1qpoa1 88 SLEQLDAVLPEKPELILLDNFAVWQTQTAVQRRDSRAPTVMLE 130 (169)
T ss_dssp SHHHHHHHGGGCCSEEEEETCCHHHHHHHHHHHHHHCTTCEEE
T ss_pred cHHHhhhhhhcCCcEEEecCcChHhHHHHHHHhhccCCeeEEE
Confidence 56777777763 3446777888888777777776655544443
No 28
>d1e0ea_ a.4.10.1 (A:) N-terminal Zn binding domain of HIV integrase {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=23.36 E-value=30 Score=20.30 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=20.2
Q ss_pred HHHHHHhhCCChhHHHHHHhhcch
Q 030926 118 IKEVKTFTGLGLKESKDLVEKAPA 141 (169)
Q Consensus 118 IK~VR~it~LgLkEaK~lVe~~P~ 141 (169)
.|.++.-.||--..||++|.++|+
T Consensus 19 ~~~L~~~F~lp~~vAr~IV~~C~~ 42 (46)
T d1e0ea_ 19 VKELSHKFGIPNLVARQIVNSCAQ 42 (46)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHCHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHH
Confidence 456777889999999999999875
No 29
>d1r8ea1 a.6.1.3 (A:3-120) Transcription activator BmrR {Bacillus subtilis [TaxId: 1423]}
Probab=23.21 E-value=29 Score=22.76 Aligned_cols=29 Identities=24% Similarity=0.290 Sum_probs=22.4
Q ss_pred chhHHHHHHHHHhhCCChhHHHHHHhhcch
Q 030926 112 ATKIKIIKEVKTFTGLGLKESKDLVEKAPA 141 (169)
Q Consensus 112 ~kKi~vIK~VR~it~LgLkEaK~lVe~~P~ 141 (169)
-..+..|+.+|+ +|++|+|.|++.+.-..
T Consensus 48 l~~l~~I~~lr~-~g~sl~eIk~~l~~~~~ 76 (118)
T d1r8ea1 48 LIHLDLIKSLKY-IGTPLEEMKKAQDLEME 76 (118)
T ss_dssp GGHHHHHHHHHH-TTCCHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHccCHH
Confidence 477777777775 79999999999865433
No 30
>d1ctfa_ d.45.1.1 (A:) Ribosomal protein L7/12, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=22.47 E-value=42 Score=21.27 Aligned_cols=22 Identities=14% Similarity=0.039 Sum_probs=18.9
Q ss_pred hHHHHHHHHhcCCHHHHHHHHH
Q 030926 40 KLERISDELLDLTKLERYDFAT 61 (169)
Q Consensus 40 kv~~Ivd~I~~LTLlE~seLv~ 61 (169)
++-..+..|.+|.|.|+.+||+
T Consensus 15 ~vIK~VR~it~lgLkEAK~lVe 36 (68)
T d1ctfa_ 15 AVIKAVRGATGLGLKEAKDLVE 36 (68)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHH
Confidence 3457788899999999999998
No 31
>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}
Probab=21.70 E-value=11 Score=24.54 Aligned_cols=48 Identities=23% Similarity=0.306 Sum_probs=36.1
Q ss_pred ccccCCCCCcccccceeehhhhccccccc-ccccCChhHHHHHHHHhcC
Q 030926 4 VTRKFPRLGRVFATLKVTEAVTLSRSLCT-VTESRTQKLERISDELLDL 51 (169)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~kv~~Ivd~I~~L 51 (169)
+++-|+|-|=|-.++.+.+--....|+-+ ........+++|+.+|..|
T Consensus 20 i~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~g~~~~i~qi~kQl~Kl 68 (78)
T d2fgca2 20 VANLFARRGFNISSITVGESETPGLSRLVIMVKGDDKTIEQIEKQAYKL 68 (78)
T ss_dssp HHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECTTHHHHHHHHHTTS
T ss_pred HHHHHhhCCcceEEEEEeecCCCCeEEEEEEEEcCHHHHHHHHHHHhCC
Confidence 45568888888888888876666677666 5555667899999888765
No 32
>d2jq4a1 a.28.1.1 (A:1-83) Hypothetical protein Atu2571 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=21.01 E-value=42 Score=20.61 Aligned_cols=22 Identities=5% Similarity=0.064 Sum_probs=19.7
Q ss_pred cCCHHHHHHHHHHHHHHhCCCC
Q 030926 50 DLTKLERYDFATLFGCKLGLDR 71 (169)
Q Consensus 50 ~LTLlE~seLv~~leekfgv~~ 71 (169)
+++=+-+.+|+..|+++|||+-
T Consensus 32 G~DSl~~~~l~~~le~~f~v~i 53 (83)
T d2jq4a1 32 GLSSFASVQLMLGIEEAFDIEF 53 (83)
T ss_dssp TCCHHHHHHHHHHHHHHHSCCC
T ss_pred hCccHHHHHHHHHHHHHHCCCC
Confidence 6788899999999999999974
No 33
>d1cdza_ c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.22 E-value=14 Score=22.87 Aligned_cols=26 Identities=12% Similarity=0.210 Sum_probs=20.3
Q ss_pred hhhcCCCHHHHHHHHHHHHHcCcEEE
Q 030926 142 VIKKGVTKEEADKIVEKLKELNAIVV 167 (169)
Q Consensus 142 ~IKe~vsKeEAEeik~kLe~aGA~Ve 167 (169)
.|-.+++.++-+.|+..+++.||++.
T Consensus 12 ~v~g~~~~~~~~~l~~~i~~~GG~v~ 37 (96)
T d1cdza_ 12 FLYGEFPGDERRKLIRYVTAFNGELE 37 (96)
T ss_dssp EECSCCCTHHHHHHHHHHHHTTCEEC
T ss_pred EEeCCCCHHHHHHHHHHHHHhCCEEe
Confidence 34334788888899999999999874
No 34
>d1exea_ a.55.1.1 (A:) Transcription factor 1, TF1 {Bacteriophage SPO1 [TaxId: 10685]}
Probab=20.16 E-value=8.9 Score=25.44 Aligned_cols=34 Identities=21% Similarity=0.294 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHhhCCChhHHHHHHhhcchhhhcC
Q 030926 113 TKIKIIKEVKTFTGLGLKESKDLVEKAPAVIKKG 146 (169)
Q Consensus 113 kKi~vIK~VR~it~LgLkEaK~lVe~~P~~IKe~ 146 (169)
+|-.+|+.|-+-+||.-++++.+++.+=..|.+.
T Consensus 2 ~K~eli~~ia~~~~ls~~~~~~~~~~~~~~i~~~ 35 (99)
T d1exea_ 2 NKTELIKAIAQDTGLTQVSVSKMLASFEKIITET 35 (99)
T ss_dssp CTTHHHHHHHHHHCSCCTTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHH
Confidence 3568999999899999999999999876666553
Done!