BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030928
(169 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 69/107 (64%)
Query: 60 VEAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTE 119
+EA + +++ +S PVLVDF+A WCGPC+ +AP+++E+ KDK++ VK++T+
Sbjct: 1 MEAGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTD 60
Query: 120 KYPQIADTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENSLS 166
+ P +A Y I ++PT ++FK GK + GA K ++Q +E L+
Sbjct: 61 ESPNVASEYGIRSIPTIMVFKGGKKCETIIGAVPKATIVQTVEKYLN 107
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
Length = 116
Score = 93.2 bits (230), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 58/87 (66%)
Query: 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTF 136
S+KPVLVDF+ATWCGPC+ +AP+L E+ + V K+D + P+ A +++ ++PT
Sbjct: 24 SNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTL 83
Query: 137 ILFKDGKPSDRFEGAFSKDQLIQRIEN 163
ILFKDG+P R GA K L++ + +
Sbjct: 84 ILFKDGQPVKRIVGAKGKAALLRELSD 110
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 92.8 bits (229), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 58/87 (66%)
Query: 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTF 136
S+KPVLVDF+ATWCGPC+ +AP+L E+ + V K+D + P+ A +++ ++PT
Sbjct: 29 SNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTL 88
Query: 137 ILFKDGKPSDRFEGAFSKDQLIQRIEN 163
ILFKDG+P R GA K L++ + +
Sbjct: 89 ILFKDGQPVKRIVGAKGKAALLRELSD 115
>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2
pdb|2PPT|B Chain B, Crystal Structure Of Thioredoxin-2
Length = 155
Score = 90.9 bits (224), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 56/94 (59%)
Query: 75 QKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALP 134
++ D P+LVDF+A WCGPC+ MAP A L ++++ KIDT+ +P +A +RI+ +P
Sbjct: 61 ERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPAVAGRHRIQGIP 120
Query: 135 TFILFKDGKPSDRFEGAFSKDQLIQRIENSLSVK 168
FILF G+ R GA +L+ + L +
Sbjct: 121 AFILFHKGRELARAAGARPASELVGFVRGKLGAR 154
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 89.7 bits (221), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 58/90 (64%)
Query: 76 KSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPT 135
+ DKPVLVDF+A WCGPC+ MAP+L E A DK+ V K++ ++ P+ + I ++PT
Sbjct: 15 QGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPT 74
Query: 136 FILFKDGKPSDRFEGAFSKDQLIQRIENSL 165
ILFK G+P + G K+QL ++ + L
Sbjct: 75 LILFKGGRPVKQLIGYQPKEQLEAQLADVL 104
>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|B Chain B, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|C Chain C, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|D Chain D, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|E Chain E, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|F Chain F, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|G Chain G, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|H Chain H, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
Length = 105
Score = 89.4 bits (220), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 58/90 (64%)
Query: 76 KSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPT 135
+ DKPVLVDF+A WCGPC+ MAP+L E A DK+ V K++ ++ P+ + I ++PT
Sbjct: 15 QGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPT 74
Query: 136 FILFKDGKPSDRFEGAFSKDQLIQRIENSL 165
ILFK G+P + G K+QL ++ + L
Sbjct: 75 LILFKGGEPVKQLIGYQPKEQLEAQLADVL 104
>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3NOF|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3O6T|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|C Chain C, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|D Chain D, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
Length = 118
Score = 89.4 bits (220), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 57/87 (65%)
Query: 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTF 136
S+KPVLVDF+ATWCGP + +AP+L E+ + V K+D + P+ A +++ ++PT
Sbjct: 26 SNKPVLVDFWATWCGPSKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTL 85
Query: 137 ILFKDGKPSDRFEGAFSKDQLIQRIEN 163
ILFKDG+P R GA K L++ + +
Sbjct: 86 ILFKDGQPVKRIVGAKGKAALLRELSD 112
>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|B Chain B, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|C Chain C, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|D Chain D, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
Length = 105
Score = 87.8 bits (216), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 57/90 (63%)
Query: 76 KSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPT 135
+ D PVLVDF+A WCGPC+ MAP+L E A DK+ V K++ ++ P+ + I ++PT
Sbjct: 15 QGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPT 74
Query: 136 FILFKDGKPSDRFEGAFSKDQLIQRIENSL 165
ILFK G+P + G K+QL ++ + L
Sbjct: 75 LILFKGGRPVKQLIGYQPKEQLEAQLADVL 104
>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS
Acidocaldarius Thioredoxin Mutant
Length = 105
Score = 87.4 bits (215), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 57/90 (63%)
Query: 76 KSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPT 135
+ D PVLVDF+A WCGPC+ MAP+L E A DK+ V K++ ++ P+ + I ++PT
Sbjct: 15 QGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPT 74
Query: 136 FILFKDGKPSDRFEGAFSKDQLIQRIENSL 165
ILFK G+P + G K+QL ++ + L
Sbjct: 75 LILFKGGEPVKQLIGYQPKEQLEAQLADVL 104
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized
Form
Length = 104
Score = 87.0 bits (214), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 61/98 (62%)
Query: 68 SSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADT 127
SS + + +S+ PV+VDF+A WCGPC+ +AP+++E+ KI V K++T++ P IA
Sbjct: 7 SSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQ 66
Query: 128 YRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENSL 165
Y I ++PT + FK+G+ + GA K L IE L
Sbjct: 67 YNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIEKYL 104
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 87.0 bits (214), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 61/98 (62%)
Query: 68 SSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADT 127
SS + + +S+ PV+VDF+A WCGPC+ +AP+++E+ KI V K++T++ P IA
Sbjct: 8 SSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQ 67
Query: 128 YRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENSL 165
Y I ++PT + FK+G+ + GA K L IE L
Sbjct: 68 YNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIEKYL 105
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
Length = 108
Score = 85.9 bits (211), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 64/101 (63%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA 125
T S D + K+D +LVDF+A WCGPC+ +APIL+E+ + K+ V K++ ++ P A
Sbjct: 8 TDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAEEYQGKLTVAKLNIDQNPGTA 67
Query: 126 DTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENSLS 166
Y I +PT +LFK+G+ + GA SK QL + ++ +L+
Sbjct: 68 PKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA 108
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 64/101 (63%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA 125
T S D + K+D +LVDF+A WCGPC+ +APIL+E+ + K+ V K++ ++ P A
Sbjct: 8 TDDSFDTDVLKADGAILVDFWAEWCGPCEMIAPILDEIADEYQGKLTVAKLNIDQNPGTA 67
Query: 126 DTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENSLS 166
Y I +PT +LFK+G+ + GA SK QL + ++ +L+
Sbjct: 68 PKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA 108
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 64/101 (63%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA 125
T S D + K+D +LVDF+A WCGPC+ +APIL+E+ + K+ V K++ ++ P A
Sbjct: 8 TEDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTA 67
Query: 126 DTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENSLS 166
Y I +PT +LFK+G+ + GA SK QL + ++ +L+
Sbjct: 68 PKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA 108
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
Length = 108
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 64/101 (63%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA 125
T S D + K+D +LVDF+A WCGPC+ +APIL+E+ + K+ V K++ ++ P A
Sbjct: 8 TDESFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTA 67
Query: 126 DTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENSLS 166
Y I +PT +LFK+G+ + GA SK QL + ++ +L+
Sbjct: 68 PKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA 108
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 64/101 (63%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA 125
T S D + K+D +LVDF+A WCGPC+ +APIL+E+ + K+ V K++ ++ P A
Sbjct: 8 TDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTA 67
Query: 126 DTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENSLS 166
Y I +PT +LFK+G+ + GA SK QL + ++ +L+
Sbjct: 68 PKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA 108
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
Length = 222
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 64/101 (63%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA 125
T S D + K+D +LVDF+A WCGPC+ +APIL+E+ + K+ V K++ ++ P A
Sbjct: 18 TDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTA 77
Query: 126 DTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENSLS 166
Y I +PT +LFK+G+ + GA SK QL + ++ +L+
Sbjct: 78 PKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA 118
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 65/101 (64%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA 125
T S D + K+D +LVDF+A WCGPC+ +APIL+E+ + K+ V K++ ++ P A
Sbjct: 8 TDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTA 67
Query: 126 DTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENSLS 166
Y I ++PT +LFK+G+ + GA SK QL + ++ +L+
Sbjct: 68 PKYGIRSIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA 108
>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile
Acetobacter Aceti
Length = 107
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 59/97 (60%)
Query: 68 SSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADT 127
SS D + K+ VLVDF+A WCGPC+ + P L E+G K+ V K++ + P+ +
Sbjct: 10 SSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPETPNA 69
Query: 128 YRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENS 164
Y++ ++PT +L +DGK D+ GA K QL +E++
Sbjct: 70 YQVRSIPTLMLVRDGKVIDKKVGALPKSQLKAWVESA 106
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20 Structures
Length = 108
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 64/101 (63%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA 125
T S D + K+D +LVDF+A WCGPC+ +APIL+E+ + K+ V K++ ++ P A
Sbjct: 8 TDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTA 67
Query: 126 DTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENSLS 166
Y I +PT +LFK+G+ + GA SK QL + ++ +L+
Sbjct: 68 PKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA 108
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 64/101 (63%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA 125
T S D + K+D +LVDF+A WCGPC+ +APIL+E+ + K+ V K++ ++ P A
Sbjct: 8 TDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTA 67
Query: 126 DTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENSLS 166
Y I +PT +LFK+G+ + GA SK QL + ++ +L+
Sbjct: 68 PKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA 108
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 64/101 (63%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA 125
T S D + K+D +LVDF+A WCGPC+ +APIL+E+ + K+ V K++ ++ P A
Sbjct: 8 TDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTA 67
Query: 126 DTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENSLS 166
Y I +PT +LFK+G+ + GA SK QL + ++ +L+
Sbjct: 68 PKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA 108
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 71/109 (65%), Gaps = 3/109 (2%)
Query: 57 LPVVEAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKI 116
+ V+E + F + + KSDKPVLVDF+A WCGPC+ +API+ E+ + K++VVK+
Sbjct: 1 MSVIEVTDENF---EQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKV 57
Query: 117 DTEKYPQIADTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENSL 165
+ ++ P A Y I ++PT +LFK+G+ DR GA K+ L +RI+ L
Sbjct: 58 NVDENPNTAAQYGIRSIPTLLLFKNGQVVDRLVGAQPKEALKERIDKHL 106
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
Length = 108
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 63/101 (62%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA 125
T S D + K+D +LVDF+A WCGPC+ +APIL E+ + K+ V K++ ++ P A
Sbjct: 8 TDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILEEIADEYQGKLTVAKLNIDQNPGTA 67
Query: 126 DTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENSLS 166
Y I +PT +LFK+G+ + GA SK QL + ++ +L+
Sbjct: 68 PKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA 108
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
Length = 108
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 64/101 (63%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA 125
T S D + K+D +LVDF+A WCGPC+ +APIL+E+ + K+ V K++ ++ P A
Sbjct: 8 TDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADDYQGKLTVAKLNIDQNPGTA 67
Query: 126 DTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENSLS 166
Y I +PT +LFK+G+ + GA SK QL + ++ +L+
Sbjct: 68 PKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA 108
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 64/101 (63%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA 125
T S D + K+D +LVDF+A WCGPC+ +APIL+E+ + K+ V K++ ++ P A
Sbjct: 8 TDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTA 67
Query: 126 DTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENSLS 166
Y I +PT +LFK+G+ + GA SK QL + ++ +L+
Sbjct: 68 PKYGIRGIPTLLLFKNGEVAACKVGALSKGQLKEFLDANLA 108
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 61/99 (61%)
Query: 68 SSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADT 127
SS + + +S+ PV+VDF+A WCGP + +AP+++E+ KI V K++T++ P IA
Sbjct: 8 SSWKEFVLESEVPVMVDFWAPWCGPSKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQ 67
Query: 128 YRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENSLS 166
Y I ++PT + FK+G+ + GA K L IE LS
Sbjct: 68 YNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIEKYLS 106
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
Length = 108
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 63/101 (62%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA 125
T S D + K+D +LVDF+A WCGPC+ +APIL+E+ + K+ V K++ ++ P A
Sbjct: 8 TDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTA 67
Query: 126 DTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENSLS 166
Y I +PT +LFK+G + GA SK QL + ++ +L+
Sbjct: 68 PKYGIRGIPTLLLFKNGDVAATKVGALSKGQLKEFLDANLA 108
>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
pdb|3DYR|B Chain B, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
Length = 111
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 63/102 (61%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA 125
T S D + K+D +LVDF+A WCGPC+ +APIL+E+ + K+ V K++ ++ P A
Sbjct: 9 TDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTA 68
Query: 126 DTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENSLSV 167
Y I PT +LFK+G+ + GA SK QL + ++ +L+
Sbjct: 69 PKYGIRGTPTLLLFKNGEVAATKVGALSKGQLKEFLDANLAA 110
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 61 EAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEK 120
E T +LD LLQ D P ++DF+A WCGPC+ API E A K++ VK++TE
Sbjct: 39 EVINATAETLDKLLQ-DDLPXVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEA 97
Query: 121 YPQIADTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENSLS 166
P ++ +RI ++PT L+++GK D GA K ++ LS
Sbjct: 98 EPALSTRFRIRSIPTIXLYRNGKXIDXLNGAVPKAPFDNWLDEQLS 143
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 56/84 (66%)
Query: 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKD 141
LVDF+ATWCGPC+ +AP+L E+ A + K ++K+D ++ P A Y + ++PT I+FKD
Sbjct: 24 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKD 83
Query: 142 GKPSDRFEGAFSKDQLIQRIENSL 165
G+P D+ G K+ L + ++ L
Sbjct: 84 GQPVDKVVGFQPKENLAEVLDKHL 107
>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin
Length = 110
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 54/85 (63%)
Query: 81 VLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFK 140
VLVDF+A WC PC+ +APIL E+ + K+ V K+D ++ P+ A YR+ ++PT ILFK
Sbjct: 22 VLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENPKTAXRYRVXSIPTVILFK 81
Query: 141 DGKPSDRFEGAFSKDQLIQRIENSL 165
DG+P + GA K +IE L
Sbjct: 82 DGQPVEVLVGAQPKRNYQAKIEKHL 106
>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus
Thermophilus Hb8
Length = 109
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 54/85 (63%)
Query: 81 VLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFK 140
VLVDF+A WC PC+ +APIL E+ + K+ V K+D ++ P+ A YR+ ++PT ILFK
Sbjct: 21 VLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENPKTAXRYRVXSIPTVILFK 80
Query: 141 DGKPSDRFEGAFSKDQLIQRIENSL 165
DG+P + GA K +IE L
Sbjct: 81 DGQPVEVLVGAQPKRNYQAKIEKHL 105
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
Length = 108
Score = 84.0 bits (206), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 60/91 (65%)
Query: 76 KSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPT 135
K+D +LVDF+A WCGPC+ +APIL+E+ + K+ V K++ ++ P A Y I +PT
Sbjct: 18 KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPT 77
Query: 136 FILFKDGKPSDRFEGAFSKDQLIQRIENSLS 166
+LFK+G+ + GA SK QL + ++ +L+
Sbjct: 78 LLLFKNGEVAATKVGALSKGQLKEFLDANLA 108
>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
pdb|2H6Z|B Chain B, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
Length = 108
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 64/101 (63%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA 125
T S D + K+D +LVDF+A WCGPC+ +APIL+++ + K+ V K++ ++ P A
Sbjct: 8 TDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDDIADEYQGKLTVAKLNIDQNPGTA 67
Query: 126 DTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENSLS 166
Y I +PT +LFK+G+ + GA SK QL + ++ +L+
Sbjct: 68 PKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA 108
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 63/101 (62%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA 125
T S D + K+D +LVDF+A WCGPC+ +APIL+E+ + K+ V K++ ++ P A
Sbjct: 8 TDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTA 67
Query: 126 DTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENSLS 166
Y I +PT +LFK+G+ + GA SK QL ++ +L+
Sbjct: 68 PKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKCFLDANLA 108
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 83.6 bits (205), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 63/101 (62%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA 125
T S D + K+D +LVDF+A WCGPC+ +APIL+E+ + K+ V K++ ++ P A
Sbjct: 8 TDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTA 67
Query: 126 DTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENSLS 166
Y I +PT +LFK+G+ + GA SK QL ++ +L+
Sbjct: 68 PKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKCFLDCNLA 108
>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli
Thioredoxin-S2 To 2.8 Angstroms Resolution
Length = 108
Score = 83.2 bits (204), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 63/101 (62%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA 125
T S D L K+D +LVDF+A WCGPC+ +APIL+E+ + K+ V K++ ++ P A
Sbjct: 8 TDDSFDTDLVKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTA 67
Query: 126 DTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENSLS 166
Y +PT +LFK+G+ + GA SK QL + ++ +L+
Sbjct: 68 PKYIERGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA 108
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 63/101 (62%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA 125
T S D + K+D +LVDF+A WCG C+ +APIL+E+ + K+ V K++ ++ P A
Sbjct: 8 TDDSFDTDVLKADGAILVDFWAEWCGHCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTA 67
Query: 126 DTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENSLS 166
Y I +PT +LFK+G+ + GA SK QL + ++ +L+
Sbjct: 68 PKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA 108
>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
pdb|1KEB|B Chain B, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
Length = 108
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 63/101 (62%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA 125
T S D + K+D +LVDF+A WCGPC+ +A IL+E+ + K+ V K++ ++ P A
Sbjct: 8 TDDSFDTDVLKADGAILVDFWAEWCGPCKLIASILDEIADEYQGKLTVAKLNIDQNPGTA 67
Query: 126 DTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENSLS 166
Y I +PT +LFK+G+ + GA SK QL + ++ +L+
Sbjct: 68 PKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA 108
>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a
Length = 128
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 63/101 (62%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA 125
T S D + K+D +LVDF+A WCGP + +APIL+E+ + K+ V K++ ++ P A
Sbjct: 28 TDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPGTA 87
Query: 126 DTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENSLS 166
Y I +PT +LFK+G+ + GA SK QL + ++ +L+
Sbjct: 88 PKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA 128
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 65/104 (62%)
Query: 63 KKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYP 122
K T S + + K+DKPVLVDF+A WCGPC+ +AP L + A DKI++VK++ ++ P
Sbjct: 8 KHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENP 67
Query: 123 QIADTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENSLS 166
A Y + ++PT +++ G+ + GA K +++ +E+ ++
Sbjct: 68 GTAAKYGVMSIPTLNVYQGGEVAKTIVGAKPKAAIVRDLEDFIA 111
>pdb|1THX|A Chain A, Thioredoxin-2
Length = 115
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 57/91 (62%)
Query: 76 KSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPT 135
K+++PVLV F+A+WCGPCQ M+P++N D+++VVK++ + P Y++E +P
Sbjct: 23 KAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPA 82
Query: 136 FILFKDGKPSDRFEGAFSKDQLIQRIENSLS 166
L K + D EG SKD+L+ ++ L+
Sbjct: 83 LRLVKGEQILDSTEGVISKDKLLSFLDTHLN 113
>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|D Chain D, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|G Chain G, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|H Chain H, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 108
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 63/101 (62%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA 125
T S D + K+D +LVDF+A WCGP + +APIL+E+ + K+ V K++ ++ P A
Sbjct: 8 TDDSFDTDVLKADGAILVDFWAEWCGPSKMIAPILDEIADEYQGKLTVAKLNIDQNPGTA 67
Query: 126 DTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENSLS 166
Y I +PT +LFK+G+ + GA SK QL + ++ +L+
Sbjct: 68 PKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA 108
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 55/84 (65%)
Query: 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKD 141
LVDF+ATWCG C+ +AP+L E+ A + K ++K+D ++ P A Y + ++PT I+FKD
Sbjct: 24 LVDFWATWCGTCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKD 83
Query: 142 GKPSDRFEGAFSKDQLIQRIENSL 165
G+P D+ G K+ L + ++ L
Sbjct: 84 GQPVDKVVGFQPKENLAEVLDKHL 107
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 55/84 (65%)
Query: 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKD 141
LVDF+ATWCG C+ +AP+L E+ A + K ++K+D ++ P A Y + ++PT I+FKD
Sbjct: 23 LVDFWATWCGSCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKD 82
Query: 142 GKPSDRFEGAFSKDQLIQRIENSL 165
G+P D+ G K+ L + ++ L
Sbjct: 83 GQPVDKVVGFQPKENLAEVLDKHL 106
>pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli Thioredoxin
With An Arginine Insertion In The Active Site
Length = 109
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 64/102 (62%), Gaps = 1/102 (0%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCG-PCQYMAPILNEVGAALKDKIQVVKIDTEKYPQI 124
T S D + K+D +LVDF+A WCG PC+ +APIL+E+ + K+ V K++ ++ P
Sbjct: 8 TDDSFDTDVLKADGAILVDFWAEWCGRPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT 67
Query: 125 ADTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENSLS 166
A Y I +PT +LFK+G+ + GA SK QL + ++ +L+
Sbjct: 68 APKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA 109
>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
pdb|3DIE|B Chain B, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
Length = 106
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 55/84 (65%)
Query: 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKD 141
LVDF+AT CGPC+ +AP+L E+ A + K ++K+D ++ P A Y + ++PT I+FKD
Sbjct: 23 LVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKD 82
Query: 142 GKPSDRFEGAFSKDQLIQRIENSL 165
G+P D+ G K+ L + ++ L
Sbjct: 83 GQPVDKVVGFQPKENLAEVLDKHL 106
>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin
From Bacillus Subtilis
pdb|2GZZ|A Chain A, Solution Structures Of The Oxidized Form Of Thioredoxin
From Bacillus Subtilis
Length = 104
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 66/109 (60%), Gaps = 5/109 (4%)
Query: 57 LPVVEAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKI 116
+ +V+A Q+FS+ + S+ VL DF+A WCGPC+ +AP+L E+ + DK+++VKI
Sbjct: 1 MAIVKATDQSFSA-----ETSEGVVLADFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKI 55
Query: 117 DTEKYPQIADTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENSL 165
D ++ + A Y + ++PT ++ KDG+ + G K+ L + + L
Sbjct: 56 DVDENQETAGKYGVMSIPTLLVLKDGEVVETSVGFKPKEALQELVNKHL 104
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 66/108 (61%), Gaps = 6/108 (5%)
Query: 59 VVEAKKQTFSSLDDLLQKSDKPV-LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKID 117
VVEA ++ F+ + + P+ LVDF+A WCGPC+ ++PIL E+ +++VVK++
Sbjct: 35 VVEADEKGFAQ-----EVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVN 89
Query: 118 TEKYPQIADTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENSL 165
+++P +A Y + ++PT +LF+ G P + GA + L +R+ L
Sbjct: 90 VDEHPGLAARYGVRSVPTLVLFRRGAPVATWVGASPRRVLEERLRPYL 137
>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin
Length = 108
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 62/101 (61%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA 125
T S D + K+D +LVDF+A WC C+ +APIL+E+ + K+ V K++ ++ P A
Sbjct: 8 TDDSFDTDVLKADGAILVDFWAEWCVWCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTA 67
Query: 126 DTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENSLS 166
Y I +PT +LFK+G+ + GA SK QL + ++ +L+
Sbjct: 68 PKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA 108
>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT
Length = 107
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 54/84 (64%)
Query: 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKD 141
LVDF+ATWCG + +AP+L E+ A + K ++K+D ++ P A Y + ++PT I+FKD
Sbjct: 24 LVDFWATWCGTSKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKD 83
Query: 142 GKPSDRFEGAFSKDQLIQRIENSL 165
G+P D+ G K+ L + ++ L
Sbjct: 84 GQPVDKVVGFQPKENLAEVLDKHL 107
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 52/82 (63%)
Query: 73 LLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEA 132
L + S K V++DF+ATWCGPC+ ++P L E+ D + V+K+D ++ IA Y I +
Sbjct: 20 LTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISS 79
Query: 133 LPTFILFKDGKPSDRFEGAFSK 154
+PTF+ K+G + F GA +K
Sbjct: 80 MPTFVFLKNGVKVEEFAGANAK 101
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 52/82 (63%)
Query: 73 LLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEA 132
L + S K V++DF+ATWCGPC+ ++P L E+ D + V+K+D ++ IA Y I +
Sbjct: 15 LTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISS 74
Query: 133 LPTFILFKDGKPSDRFEGAFSK 154
+PTF+ K+G + F GA +K
Sbjct: 75 MPTFVFLKNGVKVEEFAGANAK 96
>pdb|1OAZ|A Chain A, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
pdb|1OAZ|B Chain B, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
Length = 123
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 64/115 (55%), Gaps = 14/115 (12%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGP--------------CQYMAPILNEVGAALKDKI 111
T S D + K+D +LVDF+A WCGP C+ +APIL+E+ + K+
Sbjct: 9 TDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKL 68
Query: 112 QVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENSLS 166
V K++ ++ P A Y I +PT +LFK+G+ + GA SK QL + ++ +L+
Sbjct: 69 TVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA 123
>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|B Chain B, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|C Chain C, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|D Chain D, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
Length = 108
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 61/101 (60%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA 125
T S D + K+D +LVDF+A WC + +APIL+E+ + K+ V K++ ++ P A
Sbjct: 8 TDDSFDTDVLKADGAILVDFWAEWCACAKMIAPILDEIADEYQGKLTVAKLNIDQNPGTA 67
Query: 126 DTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENSLS 166
Y I +PT +LFK+G+ + GA SK QL + ++ +L+
Sbjct: 68 PKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA 108
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 65 QTFSSLDDLLQ--KSDKPVLVDFYATWCGPCQYMAPILNEVG-AALKDKIQVVKIDTEKY 121
Q SS D Q DK V++DF+ATWCGPC+ + P+ ++ DK+ K+D ++
Sbjct: 18 QVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQ 77
Query: 122 PQIADTYRIEALPTFILFKDGKPSDRFEGA 151
QIA I A+PTF+ FK+G+ D GA
Sbjct: 78 SQIAQEVGIRAMPTFVFFKNGQKIDTVVGA 107
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 57/91 (62%), Gaps = 4/91 (4%)
Query: 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPT- 135
DKP +VDFYA WCGPC+ +APIL E+ KI + K++ +K P++A + I+++PT
Sbjct: 50 GDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQSIPTI 109
Query: 136 -FILFKDGKPSDRFEGAFSKDQLIQRIENSL 165
F+ K G+P GA SK+QL I+ L
Sbjct: 110 WFVPMK-GEPQVNM-GALSKEQLKGYIDKVL 138
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 56/91 (61%), Gaps = 4/91 (4%)
Query: 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPT- 135
DKP +VDFYA WCGPC+ +APIL E+ KI + K++ +K P++A + I+ +PT
Sbjct: 50 GDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQGIPTI 109
Query: 136 -FILFKDGKPSDRFEGAFSKDQLIQRIENSL 165
F+ K G+P GA SK+QL I+ L
Sbjct: 110 WFVPMK-GEPQVNM-GALSKEQLKGYIDKVL 138
>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex
Length = 104
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 65/109 (59%), Gaps = 5/109 (4%)
Query: 57 LPVVEAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKI 116
+ +V+A Q+FS+ + S+ VL DF+A WCGP + +AP+L E+ + DK+++VKI
Sbjct: 1 MAIVKATDQSFSA-----ETSEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKI 55
Query: 117 DTEKYPQIADTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENSL 165
D ++ + A Y + ++PT ++ KDG+ + G K+ L + + L
Sbjct: 56 DVDENQETAGKYGVMSIPTLLVLKDGEVVETSVGFKPKEALQELVNKHL 104
>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
pdb|2VOC|B Chain B, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
Length = 112
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 65/107 (60%), Gaps = 6/107 (5%)
Query: 57 LPVVEAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKI 116
+ +V+A Q+FS+ + S+ VL DF+A WCGP + +AP+L E+ + DK+++VKI
Sbjct: 1 MAIVKATDQSFSA-----ETSEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKI 55
Query: 117 DTEKYPQIADTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIEN 163
D ++ + A Y + ++PT ++ KDG+ + G F + +Q + N
Sbjct: 56 DVDENQETAGKYGVMSIPTLLVLKDGEVVETSVG-FKPKEALQELVN 101
>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis
Thaliana
Length = 124
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 65/105 (61%), Gaps = 5/105 (4%)
Query: 65 QTFSSLDDLLQKSDKP---VLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKY 121
T + ++ LQK+++ V+VDF A+WCGPC+++AP ++ L + + +K+DT++
Sbjct: 22 HTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPN-VLFLKVDTDEL 80
Query: 122 PQIADTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENSLS 166
+A + I+A+PTF+ K+GK D+ GA KD+L I L+
Sbjct: 81 KSVASDWAIQAMPTFMFLKEGKILDKVVGA-KKDELQSTIAKHLA 124
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
Length = 105
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 59/92 (64%), Gaps = 2/92 (2%)
Query: 73 LLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEA 132
L + +K V++DFYATWCGPC+ +AP L E+ ++ D + +K+D ++ IA +I
Sbjct: 15 LNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMSDVV-FLKVDVDECEDIAQDNQIAC 73
Query: 133 LPTFILFKDGKPSDRFEGAFSKDQLIQRIENS 164
+PTF+ K+G+ D GA + D+L++ +E +
Sbjct: 74 MPTFLFMKNGQKLDSLSGA-NYDKLLELVEKN 104
>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2
pdb|1UVZ|B Chain B, Structure Of Human Thioredoxin 2
pdb|1UVZ|C Chain C, Structure Of Human Thioredoxin 2
pdb|1UVZ|D Chain D, Structure Of Human Thioredoxin 2
pdb|1UVZ|E Chain E, Structure Of Human Thioredoxin 2
pdb|1UVZ|F Chain F, Structure Of Human Thioredoxin 2
pdb|1W4V|A Chain A, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|B Chain B, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|C Chain C, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|D Chain D, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|E Chain E, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|F Chain F, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W89|A Chain A, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|B Chain B, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|C Chain C, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|D Chain D, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|E Chain E, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|F Chain F, Structure Of The Reduced Form Of Human Thioredoxin 2
Length = 119
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 52/86 (60%)
Query: 72 DLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIE 131
D + S+ PV+VDF+A WCGPC+ + P L ++ A K+ + K+D + + +A Y +
Sbjct: 25 DRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVS 84
Query: 132 ALPTFILFKDGKPSDRFEGAFSKDQL 157
A+PT + K+G D+F G +DQL
Sbjct: 85 AVPTVLAMKNGDVVDKFVGIKDEDQL 110
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa
Length = 130
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 55/87 (63%), Gaps = 2/87 (2%)
Query: 75 QKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALP 134
+++ K V++DF A+WCGPC+++AP+ E + +K+D ++ ++A+ Y +EA+P
Sbjct: 33 KEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAV-FLKVDVDELKEVAEKYNVEAMP 91
Query: 135 TFILFKDGKPSDRFEGAFSKDQLIQRI 161
TF+ KDG +D+ GA KD L I
Sbjct: 92 TFLFIKDGAEADKVVGA-RKDDLQNTI 117
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 72.8 bits (177), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 60/96 (62%), Gaps = 4/96 (4%)
Query: 76 KSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPT 135
+ DKP +VDFYA WCGPC+ +APIL+E+ +I + K+DTEK ++A + I ++P+
Sbjct: 36 EGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQELAGAFGIRSIPS 95
Query: 136 FILF--KDGKPSDRFEGAFSKDQLIQRIENSLSVKQ 169
ILF +GKP + +GA K + I+ L K+
Sbjct: 96 -ILFIPMEGKP-EMAQGAMPKASFKKAIDEFLLKKE 129
>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus
Tokodaii Strain7
Length = 104
Score = 72.8 bits (177), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 57/95 (60%), Gaps = 1/95 (1%)
Query: 72 DLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIE 131
D S + +VDF+A WC PC +API+ E+ A ++ K+++++ P IA Y +
Sbjct: 10 DSFLASHEIAVVDFWAEWCAPCLILAPIIEEL-AEDYPQVGFGKLNSDENPDIAARYGVM 68
Query: 132 ALPTFILFKDGKPSDRFEGAFSKDQLIQRIENSLS 166
+LPT I FKDG+P D GA ++++ RI+N L
Sbjct: 69 SLPTVIFFKDGEPVDEIIGAVPREEIEIRIKNLLG 103
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 55/87 (63%), Gaps = 2/87 (2%)
Query: 66 TFSSLDDLLQKS-DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQI 124
T + L+ L+ ++ + ++VDF+A WCGPC+ +AP + + + + ++ K+D ++ +
Sbjct: 6 TAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIPE-VEFAKVDVDQNEEA 64
Query: 125 ADTYRIEALPTFILFKDGKPSDRFEGA 151
A Y + A+PTF+ KDGK DRF GA
Sbjct: 65 AAKYSVTAMPTFVFIKDGKEVDRFSGA 91
>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE0|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE1|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE1|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE3|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
pdb|2OE3|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
Length = 114
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 56/90 (62%), Gaps = 2/90 (2%)
Query: 62 AKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKY 121
K + +L++++DK +++DFYATWCGPC+ M P L ++ A D ++ VK D ++
Sbjct: 15 TKLTNLTEFRNLIKQNDK-LVIDFYATWCGPCKMMQPHLTKLIQAYPD-VRFVKCDVDES 72
Query: 122 PQIADTYRIEALPTFILFKDGKPSDRFEGA 151
P IA + A+PTF+L KDG+ + GA
Sbjct: 73 PDIAKECEVTAMPTFVLGKDGQLIGKIIGA 102
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 69.7 bits (169), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 54/85 (63%), Gaps = 2/85 (2%)
Query: 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTF 136
+ K V++DF A+WCGPC+ MAP+ ++ + + +K+D ++ IA+ + +EA+PTF
Sbjct: 33 AKKLVVIDFTASWCGPCRIMAPVFADLAKKFPNAV-FLKVDVDELKPIAEQFSVEAMPTF 91
Query: 137 ILFKDGKPSDRFEGAFSKDQLIQRI 161
+ K+G DR GA K++L ++
Sbjct: 92 LFMKEGDVKDRVVGAI-KEELTAKV 115
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 69.7 bits (169), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 2/98 (2%)
Query: 64 KQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQ 123
KQ F + + + K V++DF A+WCGPC+ +AP+ E I +K+D ++
Sbjct: 14 KQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAI-FLKVDVDELKD 72
Query: 124 IADTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRI 161
+A+ Y +EA+PTF+ KDG+ D G KD + +I
Sbjct: 73 VAEAYNVEAMPTFLFIKDGEKVDSVVGG-RKDDIHTKI 109
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 69.3 bits (168), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 51/85 (60%), Gaps = 3/85 (3%)
Query: 68 SSLDDLL-QKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIAD 126
L+ LL Q +K V+VDF+ATWCGPC+ +AP+ E+ D I VK+D +K + A
Sbjct: 22 GDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY-DAI-FVKVDVDKLEETAR 79
Query: 127 TYRIEALPTFILFKDGKPSDRFEGA 151
Y I A+PTFI K+G+ GA
Sbjct: 80 KYNISAMPTFIAIKNGEKVGDVVGA 104
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 51/85 (60%), Gaps = 3/85 (3%)
Query: 68 SSLDDLL-QKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIAD 126
L+ LL Q +K V+VDF+ATWCGPC+ +AP+ E+ D I VK+D +K + A
Sbjct: 13 GDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY-DAI-FVKVDVDKLEETAR 70
Query: 127 TYRIEALPTFILFKDGKPSDRFEGA 151
Y I A+PTFI K+G+ GA
Sbjct: 71 KYNISAMPTFIAIKNGEKVGDVVGA 95
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 65 QTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQI 124
++ S D L DK V+VDF+ATWCGPC+ +AP++ + D K+D ++ +
Sbjct: 6 KSASEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYSDA-AFYKLDVDEVSDV 64
Query: 125 ADTYRIEALPTFILFKDGKPSDRFEGA 151
A + ++PT I +K GK R GA
Sbjct: 65 AQKAEVSSMPTLIFYKGGKEVTRVVGA 91
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 65 QTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQI 124
++ S D L DK V+VDF+ATWCGPC+ +AP++ + D K+D ++ +
Sbjct: 13 KSASEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYSDA-AFYKLDVDEVSDV 71
Query: 125 ADTYRIEALPTFILFKDGKPSDRFEGA 151
A + ++PT I +K GK R GA
Sbjct: 72 AQKAEVSSMPTLIFYKGGKEVTRVVGA 98
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Query: 75 QKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALP 134
+ S K ++VDF A+WC PC+ +API E+ + + +K+D ++ +A+ + +EA+P
Sbjct: 23 KGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPN-VTFLKVDVDELKAVAEEWNVEAMP 81
Query: 135 TFILFKDGKPSDRFEGAFSKDQL 157
TFI KDGK D+ GA KD L
Sbjct: 82 TFIFLKDGKLVDKTVGA-DKDGL 103
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 66.2 bits (160), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 60 VEAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTE 119
+E+K +LD DK V+VDF ATWCGPC+ + P + + + I +++D +
Sbjct: 5 IESKTAFQEALD---AAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVI-FLEVDVD 60
Query: 120 KYPQIADTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENSL 165
+A Y I +PT +LFK+G+ + GA SK QL + ++ +L
Sbjct: 61 DAQDVAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANL 106
>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 125
Score = 66.2 bits (160), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
Query: 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTF 136
+ K V++DF A+WCGP + MAP+ ++ + + +K+D ++ IA+ + +EA+PTF
Sbjct: 36 AKKLVVIDFTASWCGPSRIMAPVFADLAKKFPNAV-FLKVDVDELKPIAEQFSVEAMPTF 94
Query: 137 ILFKDGKPSDRFEGAFSKDQLIQRI 161
+ K+G DR GA K++L ++
Sbjct: 95 LFMKEGDVKDRVVGAI-KEELTAKV 118
>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From
Sulfolobus Solfataricus
Length = 110
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 61/100 (61%), Gaps = 6/100 (6%)
Query: 69 SLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVV--KIDTEKYPQIAD 126
+ D+ + K +K V+VDF+A WC PC +AP++ E+ D QV K++TE+ IA
Sbjct: 15 NFDEFITK-NKIVVVDFWAEWCAPCLILAPVIEELA---NDYPQVAFGKLNTEESQDIAM 70
Query: 127 TYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENSLS 166
Y I +LPT + FK+G+ D+ GA ++++ R+++ L
Sbjct: 71 RYGIMSLPTIMFFKNGELVDQILGAVPREEIEVRLKSLLE 110
>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin
pdb|2F51|B Chain B, Structure Of Trichomonas Vaginalis Thioredoxin
Length = 118
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 54/90 (60%), Gaps = 5/90 (5%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA 125
T +L + ++++ VLVDF+ATWCGPCQ + IL + A KD + +K+D +K A
Sbjct: 11 THEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEANKD-VTFIKVDVDKNGNAA 69
Query: 126 DTYRIEALPT-FILFKDG---KPSDRFEGA 151
D Y + ++P F + K+G K D+F GA
Sbjct: 70 DAYGVSSIPALFFVKKEGNEIKTLDQFVGA 99
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin
1 From Yeast (Trx1)
Length = 103
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 65 QTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQI 124
+T S D + + DK V+VDFYATWCGPC+ +AP++ + + K+D ++ +
Sbjct: 6 KTASEFDSAIAQ-DKLVVVDFYATWCGPCKMIAPMIEKFSEQYP-QADFYKLDVDELGDV 63
Query: 125 ADTYRIEALPTFILFKDGKPSDRFEGA 151
A + A+PT +LFK+GK + GA
Sbjct: 64 AQKNEVSAMPTLLLFKNGKEVAKVVGA 90
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 65 QTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQI 124
+T S D + + DK V+VDFYATWCGPC+ +AP++ + + K+D ++ +
Sbjct: 12 KTASEFDSAIAQ-DKLVVVDFYATWCGPCKMIAPMIEKFSEQYP-QADFYKLDVDELGDV 69
Query: 125 ADTYRIEALPTFILFKDGKPSDRFEGA 151
A + A+PT +LFK+GK + GA
Sbjct: 70 AQKNEVSAMPTLLLFKNGKEVAKVVGA 96
>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Complex With Thioredoxin Trx2
Length = 112
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 65 QTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQI 124
++ S D L DK V+VDF+ATWCGP + +AP++ + D K+D ++ +
Sbjct: 14 KSASEYDSALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYSDA-AFYKLDVDEVSDV 72
Query: 125 ADTYRIEALPTFILFKDGKPSDRFEGA 151
A + ++PT I +K GK R GA
Sbjct: 73 AQKAEVSSMPTLIFYKGGKEVTRVVGA 99
>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Complex With Trx2
Length = 104
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 65 QTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQI 124
++ S D L DK V+VDF+ATWCGP + +AP++ + D K+D ++ +
Sbjct: 6 KSASEYDSALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYSDA-AFYKLDVDEVSDV 64
Query: 125 ADTYRIEALPTFILFKDGKPSDRFEGA 151
A + ++PT I +K GK R GA
Sbjct: 65 AQKAEVSSMPTLIFYKGGKEVTRVVGA 91
>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A6
Length = 130
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 14/105 (13%)
Query: 67 FSSLDDLLQ-----------KSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVK 115
+SS DD+++ +SD LV+FYA WCG CQ + P + ALKD ++V
Sbjct: 13 YSSSDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGA 72
Query: 116 IDTEKYPQIADTYRIEALPTFILF--KDGKPSDRFEGAFSKDQLI 158
++ +K+ + Y ++ PT +F KP D ++G + + ++
Sbjct: 73 VNADKHQSLGGQYGVQGFPTIKIFGANKNKPED-YQGGRTGEAIV 116
>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|B Chain B, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|C Chain C, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
Length = 109
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA 125
T + D+++ +++K VLVD +A WC PC PI +V K K +++ ++ +IA
Sbjct: 10 TEENFDEVI-RNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQKIA 68
Query: 126 DTYRIEALPTFILFKDGKPSDRFEGAFSKDQL 157
D Y + +PT ++F +G+ D GA +D L
Sbjct: 69 DKYSVLNIPTTLIFVNGQLVDSLVGAVDEDTL 100
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Query: 72 DLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIE 131
D + ++ V+VDF+A WCGPC+ +AP E K+ +K+D ++ ++ + I
Sbjct: 20 DSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYT-KMVFIKVDVDEVSEVTEKENIT 78
Query: 132 ALPTFILFKDGKPSDRFEGAFSK--DQLIQR 160
++PTF ++K+G D GA QLI++
Sbjct: 79 SMPTFKVYKNGSSVDTLLGANDSALKQLIEK 109
>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1EP7|B Chain B, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1TOF|A Chain A, Thioredoxin H (Oxidized Form), Nmr, 23 Structures
Length = 112
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Query: 75 QKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALP 134
++ KP++VDF ATWCGPC+ +AP+ + K+ +K+D + +A+ I A+P
Sbjct: 21 KEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMP 80
Query: 135 TFILFKDGKPSDRFEGAFSKDQL 157
TF ++KDG +D GA S+D+L
Sbjct: 81 TFHVYKDGVKADDLVGA-SQDKL 102
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
Length = 109
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 65 QTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQI 124
+T S D + + DK V+VDFYATWCGP + +AP++ + + K+D ++ +
Sbjct: 12 KTASEFDSAIAQ-DKLVVVDFYATWCGPSKMIAPMIEKFSEQYP-QADFYKLDVDELGDV 69
Query: 125 ADTYRIEALPTFILFKDGKPSDRFEGA 151
A + A+PT +LFK+GK + GA
Sbjct: 70 AQKNEVSAMPTLLLFKNGKEVAKVVGA 96
>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9J|B Chain B, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9K|A Chain A, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
pdb|3M9K|B Chain B, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
Length = 105
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTF 136
DK V+VDF ATWCGPC+ + P + + + I +++D + +A ++++PTF
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVI-FLEVDVDDCQDVASESEVKSMPTF 77
Query: 137 ILFKDGKPSDRFEGA 151
FK G+ F GA
Sbjct: 78 QFFKKGQKVGEFSGA 92
>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRU|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRV|A Chain A, The High-resolution Three-dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRW|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
Length = 105
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTF 136
DK V+VDF ATWCGPC+ + P + + + I +++D + +A ++A PTF
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVI-FLEVDVDDAQDVASEAEVKATPTF 77
Query: 137 ILFKDGKPSDRFEGAFSKDQL 157
FK G+ F GA +K++L
Sbjct: 78 QFFKKGQKVGEFSGA-NKEKL 97
>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1
Oxidized With H2o2
pdb|1ERV|A Chain A, Human Thioredoxin Mutant With Cys 73 Replaced By Ser
(Reduced Form)
Length = 105
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTF 136
DK V+VDF ATWCGPC+ + P + + + I +++D + +A ++++PTF
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVI-FLEVDVDDCQDVASECEVKSMPTF 77
Query: 137 ILFKDGKPSDRFEGAFSKDQL 157
FK G+ F GA +K++L
Sbjct: 78 QFFKKGQKVGEFSGA-NKEKL 97
>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IFQ|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTF 136
DK V+VDF ATWCGPC+ + P + + + I +++D + +A ++ +PTF
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVI-FLEVDVDDCQDVASEXEVKCMPTF 77
Query: 137 ILFKDGKPSDRFEGAFSKDQL 157
FK G+ F GA +K++L
Sbjct: 78 QFFKKGQKVGEFSGA-NKEKL 97
>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|1AUC|A Chain A, Human Thioredoxin (Oxidized With Diamide)
pdb|1ERT|A Chain A, Human Thioredoxin (Reduced Form)
pdb|1ERU|A Chain A, Human Thioredoxin (Oxidized Form)
Length = 105
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTF 136
DK V+VDF ATWCGPC+ + P + + + I +++D + +A ++ +PTF
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVI-FLEVDVDDCQDVASECEVKCMPTF 77
Query: 137 ILFKDGKPSDRFEGAFSKDQL 157
FK G+ F GA +K++L
Sbjct: 78 QFFKKGQKVGEFSGA-NKEKL 97
>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form)
Length = 105
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTF 136
DK V+VDF ATWCGPC+ + P + + + I +++D +A ++ +PTF
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVI-FLEVDVNDCQDVASECEVKCMPTF 77
Query: 137 ILFKDGKPSDRFEGAFSKDQL 157
FK G+ F GA +K++L
Sbjct: 78 QFFKKGQKVGEFSGA-NKEKL 97
>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5
pdb|3APS|B Chain B, Crystal Structure Of Trx4 Domain Of Erdj5
Length = 122
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 65 QTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQI 124
QTF+ + +LQ V VDFYA WCGPCQ AP + +K K++ K+D + YPQ
Sbjct: 11 QTFN--EKVLQGKTHWV-VDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYPQT 67
Query: 125 ADTYRIEALPTFILFK 140
I+A P+ L++
Sbjct: 68 CQKAGIKAYPSVKLYQ 83
>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human Txnl2
Length = 153
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 58/100 (58%), Gaps = 4/100 (4%)
Query: 70 LDDLLQKSDKPVLV-DFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTY 128
++LL+ K +LV F+A W C M ++ E+ L ++ VK++ E P++++ Y
Sbjct: 23 FEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKEL-PQVSFVKLEAEGVPEVSEKY 81
Query: 129 RIEALPTFILFKDGKPSDRFEGAFSKD--QLIQRIENSLS 166
I ++PTF+ FK+ + DR +GA + + + +QR +S S
Sbjct: 82 EISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHASSGS 121
>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The
Glycoprotein Chaperone Erp57
Length = 113
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 43/82 (52%)
Query: 81 VLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFK 140
+LV+F+A WCG C+ +AP LK + + K+D + Y + PT +F+
Sbjct: 24 MLVEFFAPWCGHCKRLAPEYEAAATRLKGIVPLAKVDCTANTNTCNKYGVSGYPTLKIFR 83
Query: 141 DGKPSDRFEGAFSKDQLIQRIE 162
DG+ + ++G + D ++ ++
Sbjct: 84 DGEEAGAYDGPRTADGIVSHLK 105
>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Like Protein 2
Length = 130
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 57/98 (58%), Gaps = 4/98 (4%)
Query: 70 LDDLLQKSDKPVLV-DFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTY 128
++LL+ K +LV F+A W C M ++ E+ L ++ VK++ E P++++ Y
Sbjct: 29 FEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKEL-PQVSFVKLEAEGVPEVSEKY 87
Query: 129 RIEALPTFILFKDGKPSDRFEGAFSKD--QLIQRIENS 164
I ++PTF+ FK+ + DR +GA + + + +QR +S
Sbjct: 88 EISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHASS 125
>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
pdb|1EP8|B Chain B, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
Length = 112
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 75 QKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALP 134
++ KP++V F ATWCGPC+ +AP+ + K+ +K+D + +A+ I A+P
Sbjct: 21 KEEHKPIVVAFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMP 80
Query: 135 TFILFKDGKPSDRFEGAFSKDQL 157
TF ++KDG +D GA S+D+L
Sbjct: 81 TFHVYKDGVKADDLVGA-SQDKL 102
>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
pdb|4TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
Length = 105
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTF 136
DK V+VDF ATWCGPC+ + P + + + I +++D + +A ++ PTF
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVI-FLEVDVDDCQDVASECEVKCTPTF 77
Query: 137 ILFKDGKPSDRFEGAFSKDQL 157
FK G+ F GA +K++L
Sbjct: 78 QFFKKGQKVGEFSGA-NKEKL 97
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%)
Query: 80 PVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILF 139
P+++ F +WC PC+ M P E+ + ++ I+ +D E + I LP+ LF
Sbjct: 19 PIIIMFTGSWCQPCKKMKPTFEEMASQMEGDIRFAYMDAEDAEKTMAELNIRTLPSLALF 78
Query: 140 KDGKPSDRFEGAFSKDQLIQRIENSL 165
DG + F G +K L I N++
Sbjct: 79 VDGMIREVFSGTMNKSDLRYWINNNI 104
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 54/97 (55%), Gaps = 5/97 (5%)
Query: 68 SSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDK---IQVVKIDTEKYPQI 124
++ D+ + D VL++FYA WCG C+ AP ++ LKDK I V KID +
Sbjct: 23 ANFDNFVADKDT-VLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVL 81
Query: 125 ADTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRI 161
A + + PT + K G+ D +EG+ ++++++ ++
Sbjct: 82 ASRFDVSGYPTIKILKKGQAVD-YEGSRTQEEIVAKV 117
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDK---IQVVKIDTEKYP 122
T + D+++ +D +LV+FYA WCG C+ +AP + L + I + K+D
Sbjct: 136 TKENFDEVVNDADI-ILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAET 194
Query: 123 QIADTYRIEALPTFILFKDGKPSD 146
+A + + PT +F+ G+P D
Sbjct: 195 DLAKRFDVSGYPTLKIFRKGRPYD 218
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 53/97 (54%), Gaps = 5/97 (5%)
Query: 68 SSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDK---IQVVKIDTEKYPQI 124
+ D+ + D VL++FYA WCG C+ AP ++ + LKD I V KID +
Sbjct: 25 GNFDNFVADKDT-VLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASML 83
Query: 125 ADTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRI 161
A + + PT + K G+ D ++G+ ++++++ ++
Sbjct: 84 ASKFDVSGYPTIKILKKGQAVD-YDGSRTQEEIVAKV 119
>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing
Cadmium Chloride Bound To The Active Site
Length = 105
Score = 56.2 bits (134), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTF 136
DK V+VDF ATWCGP + + P + + + I +++D + +A ++++PTF
Sbjct: 19 GDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVI-FLEVDVDDSQDVASESEVKSMPTF 77
Query: 137 ILFKDGKPSDRFEGA 151
FK G+ F GA
Sbjct: 78 QFFKKGQKVGEFSGA 92
>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Mutant Human Thioredoxin And A 13
Residue Peptide Comprising Its Target Site In Human Nfkb
pdb|1MDJ|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (c35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1MDK|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (Residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1CQH|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, Minimized Average Structure
pdb|1CQG|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, 31 Structures
Length = 105
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTF 136
DK V+VDF ATWCGP + + P + + + I +++D + +A ++A PTF
Sbjct: 19 GDKLVVVDFSATWCGPAKMIKPFFHSLSEKYSNVI-FLEVDVDDAQDVASEAEVKATPTF 77
Query: 137 ILFKDGKPSDRFEGAFSKDQL 157
FK G+ F GA +K++L
Sbjct: 78 QFFKKGQKVGEFSGA-NKEKL 97
>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 116
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTF 136
DK V+VDF ATWCGP + + P + + + I +++D + +A ++++PTF
Sbjct: 30 GDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVI-FLEVDVDDCQDVASECEVKSMPTF 88
Query: 137 ILFKDGKPSDRFEGA 151
FK G+ F GA
Sbjct: 89 QFFKKGQKVGEFSGA 103
>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44
Length = 382
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 7/85 (8%)
Query: 69 SLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKI----QVV--KIDTEKYP 122
++D++L +D LV+FYA WC Q + PI E +K++ QVV ++D +++
Sbjct: 14 NIDEILNNADV-ALVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQVVFARVDCDQHS 72
Query: 123 QIADTYRIEALPTFILFKDGKPSDR 147
IA YRI PT LF++G R
Sbjct: 73 DIAQRYRISKYPTLKLFRNGXXXKR 97
>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r
pdb|3E3E|B Chain B, Human Thioredoxin Double Mutant C35s,C73r
Length = 105
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTF 136
DK V+VDF ATWCGP + + P + + + I +++D + +A ++ +PTF
Sbjct: 19 GDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVI-FLEVDVDDCQDVASECEVKRMPTF 77
Query: 137 ILFKDGKPSDRFEGAFSKDQL 157
FK G+ F GA +K++L
Sbjct: 78 QFFKKGQKVGEFSGA-NKEKL 97
>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
pdb|3D21|B Chain B, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
Length = 139
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 76 KSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPT 135
+ K VL +F A WCGPC+ +AP E+ + +V ID ++ + ++ I+A PT
Sbjct: 44 RDGKIVLANFSARWCGPCKQIAPYYIELSENYPSLMFLV-IDVDELSDFSASWEIKATPT 102
Query: 136 FILFKDGKPSDRFEGAFSKDQLIQRI 161
F +DG+ D+ GA +K +L ++I
Sbjct: 103 FFFLRDGQQVDKLVGA-NKPELHKKI 127
>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IIY|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTF 136
DK V+VDF ATWCGPC+ + P + + + I +++D + +A ++ +PTF
Sbjct: 19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVI-FLEVDVDDXQDVASEXEVKCMPTF 77
Query: 137 ILFKDGKPSDRFEGAFSKDQL 157
FK G+ F GA +K++L
Sbjct: 78 QFFKKGQKVGEFSGA-NKEKL 97
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%)
Query: 81 VLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFK 140
+LV+F+A WCG + +AP LK + + K+D + Y + PT +F+
Sbjct: 24 MLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDCTANTNTCNKYGVSGYPTLKIFR 83
Query: 141 DGKPSDRFEGAFSKDQLIQRI 161
DG+ + ++G + D ++ +
Sbjct: 84 DGEEAGAYDGPRTADGIVSHL 104
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 69 SLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAAL-KD-KIQVVKIDTEKYPQIAD 126
+ D+++ +K VL++FYA WCG C+ + P E+G L KD I + K+D +
Sbjct: 361 NFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATA-NDVPS 419
Query: 127 TYRIEALPT 135
Y + PT
Sbjct: 420 PYEVRGFPT 428
>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 120
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDK---IQVVKIDTEKYP 122
T + DD++ +D +LV+FYA WCG C+ +AP + L + I + K+D +
Sbjct: 13 TKDNFDDVVNNADI-ILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATEQT 71
Query: 123 QIADTYRIEALPTFILFKDGKPSD 146
+A + + PT +F+ G+P D
Sbjct: 72 DLAKRFDVSGYPTLKIFRKGRPFD 95
>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 133
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 69 SLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVV--KIDTEKYPQIAD 126
+ D ++ K VL++FYA WCG C+ + PI +G K + +V K+D D
Sbjct: 16 TFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITND 75
Query: 127 TYRIEALPTFILFKDGKPSD--RFEGA 151
Y++E PT G + +FEG
Sbjct: 76 QYKVEGFPTIYFAPSGDKKNPIKFEGG 102
>pdb|3QOU|A Chain A, Crystal Structure Of E. Coli Ybbn
Length = 287
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 68 SSLDDLLQKS-DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIAD 126
S+L +L++S PVL F++ C + PIL + A + + K+D + IA
Sbjct: 15 SNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCDAEQMIAA 74
Query: 127 TYRIEALPTFILFKDGKPSDRFEG 150
+ + A+PT LF++G+P D F+G
Sbjct: 75 QFGLRAIPTVYLFQNGQPVDGFQG 98
>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase A6
Length = 133
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAP----ILNEVGAALKDKIQVVKIDTEKY 121
T S D + S+ +V+FYA WCG C+ + P +EV K K+++ +D
Sbjct: 13 TDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVN 72
Query: 122 PQIADTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQR 160
+A Y I PT +F+ G+ ++G ++ ++ R
Sbjct: 73 QVLASRYGIRGFPTIKIFQKGESPVDYDGGRTRSDIVSR 111
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALK---DKIQVVKIDTEKYPQIADTYRIEAL 133
+ K +LV+FYA WCG C+ +AP + LK +I++ K+D + +A Y +
Sbjct: 23 AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGY 82
Query: 134 PTFILFKDG 142
PT F++G
Sbjct: 83 PTIKFFRNG 91
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 51.6 bits (122), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 77 SDK-PVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPT 135
SDK P LVDF+A W P + + P L + L +++V +D + + + Y I+A PT
Sbjct: 453 SDKEPWLVDFFAPWSPPSRALLPELRKASTLLYGQLKVGTLDCTIHEGLCNMYNIQAYPT 512
Query: 136 FILFKDGKPSDRFEGAFSKDQLIQRIEN 163
++F + +EG S +Q+++ IE+
Sbjct: 513 TVVFNQSSIHE-YEGHHSAEQILEFIED 539
Score = 51.2 bits (121), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 60 VEAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTE 119
++ QTF+ + +LQ V VDFYA W GP Q AP + +K K++ K+D +
Sbjct: 660 IDLTPQTFN--EKVLQGKTHWV-VDFYAPWSGPSQNFAPEFELLARMIKGKVRAGKVDCQ 716
Query: 120 KYPQIADTYRIEALPTFILFK 140
YPQ I+A P+ L++
Sbjct: 717 AYPQTCQKAGIKAYPSVKLYQ 737
Score = 35.0 bits (79), Expect = 0.018, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 66 TFSSLDDLLQ--KSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQ 123
T S+ ++L++ K D+ +VDFY+ W P Q + P + L I V +D +Y
Sbjct: 549 TPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGLINVGSVDCGQYHS 608
Query: 124 IADTYRIEALPTFILFKDGKPSDRFE 149
++ P I F K S ++
Sbjct: 609 FCTQENVQRYPE-IRFYPQKSSKAYQ 633
Score = 26.6 bits (57), Expect = 7.3, Method: Composition-based stats.
Identities = 13/77 (16%), Positives = 33/77 (42%)
Query: 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKD 141
V+FY+ +AP E + +++ ++ + + + P+ +F+
Sbjct: 137 FVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFRS 196
Query: 142 GKPSDRFEGAFSKDQLI 158
G + ++ G SK+ L+
Sbjct: 197 GMAAVKYNGDRSKESLV 213
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
Query: 59 VVEAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKID- 117
V E K TF + + DKPV++D + WCGPC+ MAP ++ D I +K+D
Sbjct: 20 VTEVNKDTFWPI--VKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVI-FLKLDC 76
Query: 118 TEKYPQIADTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENSLS 166
++ +A I +PTF + K+ GA D+L++ I+ + S
Sbjct: 77 NQENKTLAKELGIRVVPTFKILKENSVVGEVTGA-KYDKLLEAIQAARS 124
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
Query: 59 VVEAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKID- 117
V E K TF + + DKPV++D + WCGPC+ MAP ++ D I +K+D
Sbjct: 8 VTEVNKDTFWPI--VKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVI-FLKLDC 64
Query: 118 TEKYPQIADTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENSLS 166
++ +A I +PTF + K+ GA D+L++ I+ + S
Sbjct: 65 NQENKTLAKELGIRVVPTFKILKENSVVGEVTGA-KYDKLLEAIQAARS 112
>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
Length = 361
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%)
Query: 69 SLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTY 128
+ +D+ K V V+FYA WCG C+ +API +++G KD +V + +
Sbjct: 258 NFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAV 317
Query: 129 RIEALPTFILF 139
++ + PT F
Sbjct: 318 KVHSFPTLKFF 328
>pdb|1ERW|A Chain A, Human Thioredoxin Double Mutant With Cys 32 Replaced By
Ser And Cys 35 Replaced By Ser
Length = 105
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTF 136
DK V+VDF ATW GP + + P + + + I +++D + +A ++ +PTF
Sbjct: 19 GDKLVVVDFSATWSGPSKMIKPFFHSLSEKYSNVI-FLEVDVDDCQDVASECEVKCMPTF 77
Query: 137 ILFKDGKPSDRFEGA 151
FK G+ F GA
Sbjct: 78 QFFKKGQKVGEFSGA 92
>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase
Length = 121
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%)
Query: 69 SLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTY 128
+ +D+ K V V+FYA WCG C+ +API +++G KD +V + +
Sbjct: 16 NFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAV 75
Query: 129 RIEALPTFILF 139
++ + PT F
Sbjct: 76 KVHSFPTLKFF 86
>pdb|3QDN|A Chain A, Putative Thioredoxin Protein From Salmonella Typhimurium
pdb|3QDN|B Chain B, Putative Thioredoxin Protein From Salmonella Typhimurium
Length = 287
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 68 SSLDDLLQKS-DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIAD 126
S+L L++S PVL F++ C + P+L + A + + K+D + IA
Sbjct: 15 SNLQQTLEQSXTTPVLFYFWSERSQHCLQLTPVLESLAAQYHGQFILAKLDCDAEQXIAA 74
Query: 127 TYRIEALPTFILFKDGKPSDRFEG 150
+ + A+PT LF++G+P D F+G
Sbjct: 75 QFGLRAIPTVYLFQNGQPVDGFQG 98
>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Human Thioredoxin Domain-Containing Protein 5
Length = 117
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 11/98 (11%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEV------GAALKDKIQVVKIDTE 119
T ++ DD + ++ + FYA WCG C+ +AP E+ G A +++ ++D
Sbjct: 13 TENNFDDTI--AEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLA---GVKIAEVDCT 67
Query: 120 KYPQIADTYRIEALPTFILFKDGKPSDRFEGAFSKDQL 157
I Y + PT +LF+ GK G D L
Sbjct: 68 AERNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSL 105
>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human
Erp46
Length = 110
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 11/98 (11%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEV------GAALKDKIQVVKIDTE 119
T ++ DD + ++ + FYA WCG C+ +AP E+ G A +++ ++D
Sbjct: 6 TENNFDDTI--AEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLA---GVKIAEVDCT 60
Query: 120 KYPQIADTYRIEALPTFILFKDGKPSDRFEGAFSKDQL 157
I Y + PT +LF+ GK G D L
Sbjct: 61 AERNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSL 98
>pdb|3D22|A Chain A, Crystal Structure Of A Poplar Thioredoxin H Mutant,
Pttrxh4c61s
Length = 139
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Query: 76 KSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPT 135
+ K VL +F A WCGP + +AP E+ + +V ID ++ + ++ I+A PT
Sbjct: 44 RDGKIVLANFSARWCGPSRQIAPYYIELSENYPSLMFLV-IDVDELSDFSASWEIKATPT 102
Query: 136 FILFKDGKPSDRFEGAFSKDQLIQRI 161
F +DG+ D+ GA +K +L ++I
Sbjct: 103 FFFLRDGQQVDKLVGA-NKPELHKKI 127
>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|B Chain B, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|C Chain C, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|D Chain D, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|E Chain E, Crystal Structure Of The Third Catalytic Domain Of Erp46
Length = 111
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 11/98 (11%)
Query: 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEV------GAALKDKIQVVKIDTE 119
T ++ DD + ++ + FYA WCG C+ +AP E+ G A +++ ++D
Sbjct: 11 TENNFDDTI--AEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLA---GVKIAEVDCT 65
Query: 120 KYPQIADTYRIEALPTFILFKDGKPSDRFEGAFSKDQL 157
I Y + PT +LF+ GK G D L
Sbjct: 66 AERNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSL 103
>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
pdb|3ED3|B Chain B, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
Length = 298
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 69 SLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQV--VKIDTEKYPQIAD 126
S D + ++ LV+FYA WCG C+ ++ + L +QV V D K +
Sbjct: 26 SFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKALCA 85
Query: 127 TYRIEALPTFILFKD-----GKPSDRFEGAFS 153
Y + PT ++F+ KP D + +FS
Sbjct: 86 KYDVNGFPTLMVFRPPKIDLSKPIDNAKKSFS 117
>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
pdb|2KP1|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
Length = 121
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 16/114 (14%)
Query: 59 VVEAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGA-----ALKDKIQV 113
VV AK LDD K VL++FYA WCG C+ +AP E+GA KD++ +
Sbjct: 11 VVVAKNYNEIVLDDT-----KDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVI 65
Query: 114 VKIDTEKYPQIADTYRIEALPTFILFKDGKPSD--RFEGAFSKDQLIQRI-ENS 164
K+D + D I+ PT L+ G + G+ + + LI+ I EN
Sbjct: 66 AKVDATA-NDVPD--EIQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENG 116
>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of
Human Thioredoxin-Related Transmembrane Protein
Length = 126
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 82 LVDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEKYPQIADTYRIEALPTFILFK 140
+++FYA WC CQ + P +D ++ + K+D + P ++ + I ALPT K
Sbjct: 26 MIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLSGRFIINALPTIYHCK 85
Query: 141 DGKPSDRFEGAFSKDQLIQRIEN 163
DG+ R++G +K I I +
Sbjct: 86 DGE-FRRYQGPRTKKDFINFISD 107
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Query: 71 DDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYR- 129
D+++ K VLV +YA WCG C+ +AP E+ + V I K + R
Sbjct: 369 DEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLI--AKLDHTENDVRG 426
Query: 130 --IEALPTFILFKDGKPSDR--FEGAFSKDQLIQRIENS 164
IE PT +L+ GK S+ ++G+ S D L I+ +
Sbjct: 427 VVIEGYPTIVLYPGGKKSESVVYQGSRSLDSLFDFIKEN 465
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 4/94 (4%)
Query: 69 SLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDK-IQVVKIDTEKYPQIADT 127
S ++ +Q D VL +F+A WCG C+ MAP + L +K I + +ID + +
Sbjct: 23 SFNEYIQSHDL-VLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCME 81
Query: 128 YRIEALPTFILFKDGKPSDR--FEGAFSKDQLIQ 159
+ I P+ +FK+ ++ +EG + + ++Q
Sbjct: 82 HNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQ 115
>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin F
pdb|2PVO|C Chain C, Crystal Srtucture Of The Ternary Complex Between
Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
Reductase
Length = 111
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 5/109 (4%)
Query: 59 VVEAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKID- 117
V E K TF + + DKPV++D + WCGP + MAP ++ D I +K+D
Sbjct: 7 VTEVNKDTFWPI--VKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLDVI-FLKLDC 63
Query: 118 TEKYPQIADTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENSLS 166
++ +A I +PTF + K+ GA D+L++ I+ + S
Sbjct: 64 NQENKTLAKELGIRVVPTFKILKENSVVGEVTGA-KYDKLLEAIQAARS 111
>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Human Protein Disulfide-Isomerase A3
Length = 142
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 69 SLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAAL-KD-KIQVVKIDTEKYPQIAD 126
+ D+++ +K VL++FYA WCG C+ + P E+G L KD I + K+D +
Sbjct: 36 NFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAN-DVPS 94
Query: 127 TYRIEALPT 135
Y + PT
Sbjct: 95 PYEVRGFPT 103
>pdb|2DJ0|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Related Transmembrane Protein 2
Length = 137
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 10/88 (11%)
Query: 69 SLDDLLQKSDKPV--LVDFYATWCGPCQYMAPILNEVGAALK-DKIQVVKIDTEKYPQIA 125
++D+ L++ DK V +V+F+A W CQ API ++ + K+D +Y ++
Sbjct: 16 TIDEELER-DKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVS 74
Query: 126 DTYRIEA------LPTFILFKDGKPSDR 147
Y++ LPT ILF+ GK + R
Sbjct: 75 TRYKVSTSPLTKQLPTLILFQGGKEAMR 102
>pdb|3UL3|B Chain B, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
pdb|3UL3|A Chain A, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
Length = 128
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 52/99 (52%)
Query: 64 KQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQ 123
+Q S++ + + + +++ F+A WC C + ++++ +I ++K+D +K
Sbjct: 28 QQNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNES 87
Query: 124 IADTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIE 162
+A + +++LPT IL K+ R + S + LI I+
Sbjct: 88 LARKFSVKSLPTIILLKNKTMLARKDHFVSSNDLIALIK 126
>pdb|3HZ4|A Chain A, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
pdb|3HZ4|B Chain B, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
Length = 140
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 59 VVEAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDT 118
++E + T+S ++ S KPV+V FY+ C C+ P E +I+
Sbjct: 8 IIEFEDXTWS---QQVEDSKKPVVVXFYSPACPYCKAXEPYFEEYAKEYGSSAVFGRINI 64
Query: 119 EKYPQIADTYRIEALPTFILFKDGKP 144
P A+ Y ++ PTF F G+P
Sbjct: 65 ATNPWTAEKYGVQGTPTFKFFCHGRP 90
>pdb|2L6C|A Chain A, Solution Structure Of Desulfothioredoxin From
Desulfovibrio Vulgaris Hildenborough In Its Oxidized
Form
pdb|2L6D|A Chain A, Solution Structure Of Desulfothioredoxin From
Desulfovibrio Vulgaris Hildenborough In Its Reduced Form
Length = 110
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 9/97 (9%)
Query: 61 EAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEK 120
EA F L D +V F+ C C+ M +L++ GA ++ + +D+E
Sbjct: 10 EAGMAHFEGLSD--------AIVFFHKNLCPHCKNMEKVLDKFGAR-APQVAISSVDSEA 60
Query: 121 YPQIADTYRIEALPTFILFKDGKPSDRFEGAFSKDQL 157
P++ E +PT + +DGK + F G + +L
Sbjct: 61 RPELMKELGFERVPTLVFIRDGKVAKVFSGIMNPREL 97
>pdb|3GNJ|A Chain A, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|B Chain B, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|C Chain C, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|D Chain D, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
Length = 111
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 45/99 (45%)
Query: 68 SSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADT 127
++ + L+ K LV F C CQ + P+L E+ ++ +D E+ +
Sbjct: 12 NTFEQLIYDEGKACLVXFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEKTLFQR 71
Query: 128 YRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENSLS 166
+ ++ +P + FKDG+ + G D++ Q I + L
Sbjct: 72 FSLKGVPQILYFKDGEYKGKXAGDVEDDEVEQXIADVLE 110
>pdb|3D6I|A Chain A, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
pdb|3D6I|B Chain B, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
Length = 112
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 53/112 (47%), Gaps = 3/112 (2%)
Query: 58 PVVEAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKI 116
PV+E Q + DK +++ F+ +W PC+ + + + + + + I
Sbjct: 1 PVIEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSI 60
Query: 117 DTEKYPQIADTYRIEALPTFILFKDGKPSDRFEGAFSKD--QLIQRIENSLS 166
D ++ +I++ + I A+P FI+ G GA K+ L++ +NS++
Sbjct: 61 DADENSEISELFEISAVPYFIIIHKGTILKELSGADPKEYVSLLEDXKNSVN 112
>pdb|1R26|A Chain A, Crystal Structure Of Thioredoxin From Trypanosoma Brucei
Brucei
Length = 125
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 85 FYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKP 144
F A WCGPC+ + + ++ ++ K+D + +I R+ LPTFI+ + GK
Sbjct: 44 FTAVWCGPCKTIERPMEKIAYEFP-TVKFAKVDADNNSEIVSKCRVLQLPTFIIARSGKM 102
Query: 145 SDRFEGA 151
GA
Sbjct: 103 LGHVIGA 109
>pdb|1ZZO|A Chain A, Structure Of Mtb Dsbf In Its Oxidized Form
Length = 136
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 22/105 (20%)
Query: 79 KPVLVDFYATWCGPCQYMAPILNE----------VGAALKDKIQVVKIDTEKYP-----Q 123
KP ++ F+A WC CQ AP++ + VG A D++ ++ KYP Q
Sbjct: 26 KPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQ 85
Query: 124 IADT-------YRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRI 161
+ADT + + P + D G S+D+L +R+
Sbjct: 86 LADTDGSVWANFGVTQQPAYAFVDPHGNVDVVRGRMSQDELTRRV 130
>pdb|3IOS|A Chain A, Structure Of Mtb Dsbf In Its Mixed Oxidized And Reduced
Forms
Length = 150
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 22/105 (20%)
Query: 79 KPVLVDFYATWCGPCQYMAPILNE----------VGAALKDKIQVVKIDTEKYP-----Q 123
KP ++ F+A WC CQ AP++ + VG A D++ ++ KYP Q
Sbjct: 40 KPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQ 99
Query: 124 IADT-------YRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRI 161
+ADT + + P + D G S+D+L +R+
Sbjct: 100 LADTDGSVWANFGVTQQPAYAFVDPHGNVDVVRGRMSQDELTRRV 144
>pdb|3CXG|A Chain A, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
pdb|3CXG|B Chain B, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
Length = 133
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 18/81 (22%)
Query: 64 KQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQ-----VVKIDT 118
Q FSS + +++ F A WC PC N++ K+++ +V ID
Sbjct: 32 NQVFSST------QNSSIVIKFGAVWCKPC-------NKIKEYFKNQLNYYYVTLVDIDV 78
Query: 119 EKYPQIADTYRIEALPTFILF 139
+ +P++ D + I+ALPTF +
Sbjct: 79 DIHPKLNDQHNIKALPTFEFY 99
>pdb|2KUC|A Chain A, Solution Structure Of A Putative Disulphide-Isomerase From
Bacteroides Thetaiotaomicron
Length = 130
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Query: 78 DKPVLVDFYATWCGPCQYMAPILNE---VGAALKDKIQVVKIDTEKYP--QIADTYRIEA 132
DK + VD + TWCGPC+ ++ ++ + V +K+D EK ++ Y + A
Sbjct: 27 DKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYGVHA 86
Query: 133 LPTFILFK-DGKPSDRFEGAFSKDQLIQRIE 162
PT + G+ R GA +L+++++
Sbjct: 87 YPTLLFINSSGEVVYRLVGAEDAPELLKKVK 117
>pdb|2LJA|A Chain A, Solution Structure Of A Putative Thiol-Disulfide
Oxidoreductase From Bacteroides Vulgatus
Length = 152
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 28/100 (28%)
Query: 69 SLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEV------------------------G 104
SL DL K + +D +ATWCGPC+ P L E+
Sbjct: 24 SLADL---KGKYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWEN 80
Query: 105 AALKDKIQVVKIDTEKYPQIADTYRIEALPTFILF-KDGK 143
KD+++ +++ D Y I +P FIL +DGK
Sbjct: 81 MVTKDQLKGIQLHMGTDRTFMDAYLINGIPRFILLDRDGK 120
>pdb|3GL3|A Chain A, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|B Chain B, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|C Chain C, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|D Chain D, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
Length = 152
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 73 LLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDK-IQVVKIDTE 119
L K+ V +DF+A+WCGPC+ P N+ A K K QVV ++ +
Sbjct: 23 LSDKTGSVVYLDFWASWCGPCRQSFPWXNQXQAKYKAKGFQVVAVNLD 70
>pdb|1GH2|A Chain A, Crystal Structure Of The Catalytic Domain Of A New Human
Thioredoxin-Like Protein
Length = 107
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 72 DLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIE 131
+L + +V F CGPC +AP + + + +++D + A T I
Sbjct: 15 ELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAV-FLEVDVHQCQGTAATNNIS 73
Query: 132 ALPTFILFKDGKPSDRFEGA 151
A PTF F++ D+++GA
Sbjct: 74 ATPTFQFFRNKVRIDQYQGA 93
>pdb|1KNG|A Chain A, Crystal Structure Of Ccmg Reducing Oxidoreductase At 1.14
A
Length = 156
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 7/49 (14%)
Query: 82 LVDFYATWCGPCQYMAPILNEVGAALKDK-IQVVKIDTEKYPQIADTYR 129
LV+ +A+WC PC AP+L E+G KDK Q+V I+ Y AD R
Sbjct: 46 LVNVWASWCVPCHDEAPLLTELG---KDKRFQLVGIN---YKDAADNAR 88
>pdb|1J08|A Chain A, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|B Chain B, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|C Chain C, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|D Chain D, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|E Chain E, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|F Chain F, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|G Chain G, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|H Chain H, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
Length = 226
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 37/61 (60%)
Query: 106 ALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENSL 165
A K KI ++ +YP+ AD Y + A+P ++ +G+ +FEGA+ + ++++ ++L
Sbjct: 166 AGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNGEDKVQFEGAYPEKMFLEKLLSAL 225
Query: 166 S 166
S
Sbjct: 226 S 226
Score = 30.4 bits (67), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 90 CGPCQYMAPILNEVGAALKDKI--QVVKIDTEKYPQIADTYRIEALPTFILFKDGK 143
C C + ++ E+ + L DK+ ++V DT + ++A+ YRI+ P + +DGK
Sbjct: 35 CQYCDQLKQLVQEL-SELTDKLSYEIVDFDTPEGKELAEKYRIDRAPATTITQDGK 89
>pdb|1A8L|A Chain A, Protein Disulfide Oxidoreductase From Archaeon Pyrococcus
Furiosus
Length = 226
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 36/61 (59%)
Query: 106 ALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENSL 165
A K KI ++ +YP+ AD Y + A+P ++ +G+ FEGA+ + ++++ ++L
Sbjct: 166 AGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNGEDRVEFEGAYPEKMFLEKLLSAL 225
Query: 166 S 166
S
Sbjct: 226 S 226
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 90 CGPCQYMAPILNEVGAALKDKI--QVVKIDTEKYPQIADTYRIEALPTFILFKDGK 143
C C + ++ E+ + L DK+ ++V DT + ++A YRI+ P + +DGK
Sbjct: 35 CQYCDQLKQLVQEL-SELTDKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQDGK 89
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/77 (19%), Positives = 35/77 (45%)
Query: 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKD 141
V+FY+ C C +AP E + +++ ++ + + + P+ +F+
Sbjct: 118 FVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFRS 177
Query: 142 GKPSDRFEGAFSKDQLI 158
G + ++ G SK+ L+
Sbjct: 178 GMAAVKYNGDRSKESLV 194
>pdb|1JFU|A Chain A, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
pdb|1JFU|B Chain B, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
Length = 186
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 79 KPVLVDFYATWCGPCQYMAPILNEVGAALKD---KIQVVKIDTEKYPQIADTYRIEA-LP 134
K +LV+ +ATWC PC+ P L+E+ L ++ + IDT + P+ T+ EA L
Sbjct: 61 KTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDT-RDPEKPKTFLKEANLT 119
Query: 135 TFILFKDGK 143
F D K
Sbjct: 120 RLGYFNDQK 128
>pdb|2LST|A Chain A, Solution Structure Of A Thioredoxin From Thermus
Thermophilus
Length = 130
Score = 33.9 bits (76), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 73 LLQKSDKPVLVDFYATWCGPCQYMAP-ILNEVGAA--LKDKIQV--VKIDTEKYPQIADT 127
L Q + V+V F++ C CQ M +L++ G + L+ + V V +DT + ++A
Sbjct: 14 LAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEGQELARR 73
Query: 128 YRIEALPTFIL 138
YR+ PTF+
Sbjct: 74 YRVPGTPTFVF 84
>pdb|3HA9|A Chain A, The 1.7a Crystal Structure Of A Thioredoxin-like Protein
From Aeropyrum Pernix
Length = 165
Score = 33.9 bits (76), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 18/68 (26%)
Query: 81 VLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA----DTYRIEALPTF 136
V++ F A WC C YMA +L+ + TEKY +I+ D + EAL
Sbjct: 40 VILWFMAAWCPSCVYMADLLDRL--------------TEKYREISVIAIDFWTAEALKAL 85
Query: 137 ILFKDGKP 144
L K G P
Sbjct: 86 GLNKPGYP 93
>pdb|3H79|A Chain A, Crystal Structure Of Trypanosoma Cruzi Thioredoxin-like
Hypothetical Protein Q4dv70
Length = 127
Score = 33.1 bits (74), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 8/82 (9%)
Query: 59 VVEAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQ-----V 113
VVE +TF D ++ +K V V +Y W + +++ + K
Sbjct: 17 VVELTDETF---DSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVA 73
Query: 114 VKIDTEKYPQIADTYRIEALPT 135
+ID EKYP + + R+ PT
Sbjct: 74 ARIDGEKYPDVIERMRVSGFPT 95
>pdb|3KCM|A Chain A, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|B Chain B, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|C Chain C, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|D Chain D, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|E Chain E, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|F Chain F, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
Length = 154
Score = 33.1 bits (74), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 81 VLVDFYATWCGPCQYMAPILNEVGAALKDK 110
V+V+F+ATWC PC+ P + AA K
Sbjct: 31 VIVNFWATWCPPCREEIPSXXRLNAAXAGK 60
>pdb|3T58|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
Length = 519
Score = 32.3 bits (72), Expect = 0.15, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 83 VDFYATWCGPCQYMAPILNEVGAALKD-----KIQVVKIDTEKYPQIADTYRIEALPTFI 137
V+F+A+WCG AP E+ +KD + V+ E + + I PT
Sbjct: 35 VEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAGFPTVR 94
Query: 138 LFK 140
F+
Sbjct: 95 FFQ 97
>pdb|2H1B|A Chain A, Resa E80q
pdb|2H1B|B Chain B, Resa E80q
pdb|2H1B|C Chain C, Resa E80q
pdb|2H1B|D Chain D, Resa E80q
Length = 143
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 24/89 (26%)
Query: 79 KPVLVDFYATWCGPCQYMAPIL-NEVGAALKDKIQVVKIDTEK---------------YP 122
K V ++F+ TWC PC+ P + N+ +++V ++ + +P
Sbjct: 27 KGVFLNFWGTWCEPCKKQFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFP 86
Query: 123 -------QIADTYRIEALP-TFILFKDGK 143
Q+ D Y + LP TF++ +GK
Sbjct: 87 VVLDTDRQVLDAYDVSPLPTTFLINPEGK 115
>pdb|3RAZ|A Chain A, The Crystal Structure Of Thioredoxin-Related Protein
From Neisseria Meningitidis Serogroup B
Length = 151
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 74 LQKSDKPV-LVDFYATWCGPCQYMAP 98
LQ PV +V+ +ATWCGPC+ P
Sbjct: 19 LQSLKAPVRIVNLWATWCGPCRKEXP 44
>pdb|2H30|A Chain A, Crystal Structure Of The N-Terminal Domain Of Pilb From
Neisseria Gonorrhoeae
Length = 164
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 6/33 (18%)
Query: 76 KSDKPVLVDFYATWCGPCQYMAPILNEVGAALK 108
K DKP L+ F+A+WC C L+E+G A K
Sbjct: 36 KKDKPTLIKFWASWCPLC------LSELGQAEK 62
>pdb|3K8N|A Chain A, Crystal Structure Of E. Coli Ccmg
Length = 185
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 79 KPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKID 117
KPVL++ +ATWC C+ LN++ A I+VV ++
Sbjct: 69 KPVLLNVWATWCPTCRAEHQYLNQLSA---QGIRVVGMN 104
>pdb|2G0F|A Chain A, Crystal Structure Of P144a Mutant Of E.Coli Ccmg Protein
Length = 168
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 79 KPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKID 117
KPVL++ +ATWC C+ LN++ A I+VV ++
Sbjct: 52 KPVLLNVWATWCPTCRAEHQYLNQLSA---QGIRVVGMN 87
>pdb|2B1K|A Chain A, Crystal Structure Of E. Coli Ccmg Protein
Length = 168
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 79 KPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKID 117
KPVL++ +ATWC C+ LN++ A I+VV ++
Sbjct: 52 KPVLLNVWATWCPTCRAEHQYLNQLSA---QGIRVVGMN 87
>pdb|1ST9|A Chain A, Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|1ST9|B Chain B, Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|1SU9|A Chain A, Reduced Structure Of The Soluble Domain Of Resa
pdb|1SU9|B Chain B, Reduced Structure Of The Soluble Domain Of Resa
pdb|2H1D|A Chain A, Resa Ph 9.25
pdb|2H1D|B Chain B, Resa Ph 9.25
Length = 143
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 24/89 (26%)
Query: 79 KPVLVDFYATWCGPCQYMAPIL-NEVGAALKDKIQVVKIDTEK---------------YP 122
K V ++F+ TWC PC+ P + N+ +++V ++ + +P
Sbjct: 27 KGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFP 86
Query: 123 -------QIADTYRIEALP-TFILFKDGK 143
Q+ D Y + LP TF++ +GK
Sbjct: 87 VVLDTDRQVLDAYDVSPLPTTFLINPEGK 115
>pdb|1UC7|A Chain A, Crystal Structure Of Dsbdgamma
pdb|1UC7|B Chain B, Crystal Structure Of Dsbdgamma
Length = 125
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 11/88 (12%)
Query: 73 LLQKSDKPVLVDFYATWCGPCQYMAPIL---NEVGAALKDKIQV---VKIDTEKYPQIAD 126
L++ KPV++D YA WC C+ +V AL D + + V + + +
Sbjct: 23 LVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLK 82
Query: 127 TYRIEALPTFILFKDGK----PSDRFEG 150
+ LPT ILF DG+ P R G
Sbjct: 83 HLNVLGLPT-ILFFDGQGQEHPQARVTG 109
>pdb|2FWE|A Chain A, Crystal Structure Of The C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd (Oxidized Form)
pdb|2FWF|A Chain A, High Resolution Crystal Structure Of The C-Terminal Domain
Of The Electron Transfer Catalyst Dsbd (Reduced Form)
pdb|2FWG|A Chain A, High Resolution Crystal Structure Of The C-Terminal Domain
Of The Electron Transfer Catalyst Dsbd (Photoreduced
Form)
pdb|2FWH|A Chain A, Atomic Resolution Crystal Structure Of The C-Terminal
Domain Of The Electron Transfer Catalyst Dsbd (Reduced
Form At Ph7)
Length = 134
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 11/88 (12%)
Query: 73 LLQKSDKPVLVDFYATWCGPCQYMAPIL---NEVGAALKDKIQV---VKIDTEKYPQIAD 126
L++ KPV++D YA WC C+ +V AL D + + V + + +
Sbjct: 26 LVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLK 85
Query: 127 TYRIEALPTFILFKDGK----PSDRFEG 150
+ LPT ILF DG+ P R G
Sbjct: 86 HLNVLGLPT-ILFFDGQGQEHPQARVTG 112
>pdb|2B1L|A Chain A, Crystal Structure Of N-Terminal 57 Residue Deletion Mutant
Of E. Coli Ccmg Protein(Residues 58-185)
pdb|2B1L|B Chain B, Crystal Structure Of N-Terminal 57 Residue Deletion Mutant
Of E. Coli Ccmg Protein(Residues 58-185)
Length = 129
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 79 KPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKID 117
KPVL++ +ATWC C+ LN++ A I+VV ++
Sbjct: 13 KPVLLNVWATWCPTCRAEHQYLNQLSA---QGIRVVGMN 48
>pdb|2B5X|A Chain A, Solution Structure Of A Thioredoxin-Like Protein In The
Reduced Form
pdb|2B5Y|A Chain A, Solution Structure Of A Thioredoxin-Like Protein In The
Oxidized Form
Length = 148
Score = 31.2 bits (69), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKI 116
+KP L+ F++ C C+ P +NE +D++ VV +
Sbjct: 28 GEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAV 67
>pdb|3Q6O|A Chain A, Oxidoreductase Fragment Of Human Qsox1
Length = 244
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 83 VDFYATWCGPCQYMAPI---LNEVGAALKDKIQVVKIDT--EKYPQIADTYRIEALPTFI 137
V+F+A+WCG C AP L E A + + + +D E + + I PT
Sbjct: 35 VEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPGFPTVR 94
Query: 138 LF 139
F
Sbjct: 95 FF 96
>pdb|3HDC|A Chain A, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
Length = 158
Score = 31.2 bits (69), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 21/104 (20%)
Query: 73 LLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAAL-KDKIQVVKIDTEK-YP-------- 122
L Q K VLV+F+A+WC C+ P + + + K + V+ ++ EK +P
Sbjct: 36 LAQYRGKIVLVNFWASWCPYCRDEXPSXDRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPV 95
Query: 123 ----------QIADTYRIEALP-TFILFKDGKPSDRFEGAFSKD 155
Q+ Y LP TFI+ + G R G D
Sbjct: 96 SFNFLSDATGQVQQRYGANRLPDTFIVDRKGIIRQRVTGGIEWD 139
>pdb|3FK8|A Chain A, The Crystal Structure Of Disulphide Isomerase From Xylella
Fastidiosa Temecula1
Length = 133
Score = 31.2 bits (69), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 75 QKSDKPVLVDFYATWCGPCQYMAPIL-NEVGAALKDK-IQVVKIDTEKYPQ 123
+++ KP L+ F A WC C+ + L N+ AL K +VVKID + +
Sbjct: 26 KRTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDR 76
>pdb|1SZK|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|B Chain B, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|C Chain C, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|D Chain D, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
Length = 426
Score = 30.8 bits (68), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 101 NEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDG 142
N++G LKD + + EK+P+I D + A+ LF+DG
Sbjct: 325 NDLGQKLKDGLLAI---AEKHPEIGDVRGLGAMIAIELFEDG 363
>pdb|1SZU|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|B Chain B, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|C Chain C, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|D Chain D, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
Length = 426
Score = 30.8 bits (68), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 101 NEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDG 142
N++G LKD + + EK+P+I D + A+ LF+DG
Sbjct: 325 NDLGQKLKDGLLAI---AEKHPEIGDVRGLGAMIAIELFEDG 363
>pdb|1SF2|A Chain A, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|B Chain B, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|C Chain C, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|D Chain D, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SFF|A Chain A, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|B Chain B, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|C Chain C, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|D Chain D, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
Length = 426
Score = 30.8 bits (68), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 101 NEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDG 142
N++G LKD + + EK+P+I D + A+ LF+DG
Sbjct: 325 NDLGQKLKDGLLAI---AEKHPEIGDVRGLGAMIAIELFEDG 363
>pdb|1LU4|A Chain A, 1.1 Angstrom Resolution Crystal Structure Of A Secreted
Mycobacterium Tuberculosis Disulfide Oxidoreductase
Homologous To E. Coli Dsbe: Implications For Functions
Length = 136
Score = 30.8 bits (68), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 26/108 (24%)
Query: 79 KPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTE---------------KYPQ 123
KP ++ F+ WC C AP L++V AA + V I T +
Sbjct: 25 KPAVLWFWTPWCPFCNAEAPSLSQVAAA-NPAVTFVGIATRADVGAMQSFVSKYNLNFTN 83
Query: 124 IADT-------YRIEALPTFILFK-DGKPS--DRFEGAFSKDQLIQRI 161
+ D Y + P F+ ++ DG + + A S+D+L R+
Sbjct: 84 LNDADGVIWARYNVPWQPAFVFYRADGTSTFVNNPTAAMSQDELSGRV 131
>pdb|1SZS|A Chain A, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|B Chain B, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|C Chain C, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|D Chain D, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
Length = 426
Score = 30.8 bits (68), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 101 NEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDG 142
N++G LKD + + EK+P+I D + A+ LF+DG
Sbjct: 325 NDLGQKLKDGLLAI---AEKHPEIGDVRGLGAMIAIELFEDG 363
>pdb|2E7P|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|C Chain C, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|D Chain D, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
Length = 116
Score = 30.8 bits (68), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 10/53 (18%)
Query: 70 LDDLLQK-----SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKID 117
LD L+K S PV+V F T+CG C + +L +VGA+ K VV++D
Sbjct: 6 LDAALKKAKELASSAPVVV-FSKTYCGYCNRVKQLLTQVGASYK----VVELD 53
>pdb|1Z7P|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
pdb|1Z7R|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
Length = 117
Score = 30.4 bits (67), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 10/53 (18%)
Query: 70 LDDLLQK-----SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKID 117
LD L+K S PV+V F T+CG C + +L +VGA+ K VV++D
Sbjct: 7 LDAALKKAKELASSAPVVV-FSKTYCGYCNRVKQLLTQVGASYK----VVELD 54
>pdb|2LS5|A Chain A, Solution Structure Of A Putative Protein Disulfide
Isomerase From Bacteroides Thetaiotaomicron
Length = 159
Score = 30.4 bits (67), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Query: 57 LPVVEAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNE 102
+ + + K+ T SSL K V++ F A+WCG C+ P + +
Sbjct: 18 ITLTDGKQVTLSSL------RGKVVMLQFTASWCGVCRKEMPFIEK 57
>pdb|1O73|A Chain A, Tryparedoxin From Trypanosoma Brucei
Length = 144
Score = 30.4 bits (67), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 69 SLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNE 102
SL L+ K+ V + F A+WC PC+ P+L E
Sbjct: 22 SLGSLVGKT---VFLYFSASWCPPCRGFTPVLAE 52
>pdb|2JZR|A Chain A, Solution Structure Of The Oxidized Form (Cys67-Cys70) Of
The N-Terminal Domain Of Pilb From N. Meningitidis.
pdb|2JZS|A Chain A, Solution Structure Of The Reduced Form Of The N-Terminal
Domain Of Pilb From N. Meningitidis.
pdb|2K9F|A Chain A, Structural Features Of The Complex Between The Dsbd N-
Terminal And The Pilb N-Terminal Domains From Neisseria
Meningitidis
Length = 144
Score = 30.4 bits (67), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 6/29 (20%)
Query: 76 KSDKPVLVDFYATWCGPCQYMAPILNEVG 104
K DKP L+ F+A+WC C L+E+G
Sbjct: 22 KKDKPTLIKFWASWCPLC------LSELG 44
>pdb|2FY6|A Chain A, Structure Of The N-Terminal Domain Of Neisseria
Meningitidis Pilb
Length = 143
Score = 30.0 bits (66), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 6/29 (20%)
Query: 76 KSDKPVLVDFYATWCGPCQYMAPILNEVG 104
K DKP L+ F+A+WC C L+E+G
Sbjct: 21 KKDKPTLIKFWASWCPLC------LSELG 43
>pdb|3IRA|A Chain A, The Crystal Structure Of One Domain Of The Conserved
Protein From Methanosarcina Mazei Go1
Length = 173
Score = 30.0 bits (66), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 75 QKSDKPVLVDFYATWCGPCQYMAPIL---NEVGAALKDKIQVVKIDTEKYPQIADTYRIE 131
+K +KPV + + C C MA EV + + +K+D E+ P I + Y
Sbjct: 36 RKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEAFVSIKVDREERPDIDNIYM-- 93
Query: 132 ALPTFILFKDGKP 144
+ IL + G P
Sbjct: 94 TVCQIILGRGGWP 106
>pdb|3OR5|A Chain A, Crystal Structure Of Thiol:disulfide Interchange
Protein, Thioredoxin Family Protein From Chlorobium
Tepidum Tls
Length = 165
Score = 30.0 bits (66), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 78 DKPVLVDFYATWCGPCQYMAP 98
K +V+F+ATWC PC+ P
Sbjct: 34 GKAYIVNFFATWCPPCRSEIP 54
>pdb|1NHO|A Chain A, Structural And Functional Characterization Of A
Thioredoxin-Like Protein From Methanobacterium
Thermoautotrophicum
Length = 85
Score = 29.6 bits (65), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 85 FYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKP 144
F + C C +++E DKI V KID + A Y + A+P +
Sbjct: 8 FTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAI----NG 63
Query: 145 SDRFEGAFSKDQLIQRIENSLS 166
RF GA S+++L + I + +
Sbjct: 64 VVRFVGAPSREELFEAINDEME 85
>pdb|2F9S|A Chain A, 2nd Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|2F9S|B Chain B, 2nd Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
Length = 151
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 79 KPVLVDFYATWCGPCQYMAP 98
K V ++F+ TWC PC+ P
Sbjct: 27 KGVFLNFWGTWCEPCKKEFP 46
>pdb|1VRS|D Chain D, Crystal Structure Of The Disulfide-Linked Complex
Between The N- Terminal And C-Terminal Domain Of The
Electron Transfer Catalyst Dsbd
pdb|1VRS|E Chain E, Crystal Structure Of The Disulfide-Linked Complex
Between The N- Terminal And C-Terminal Domain Of The
Electron Transfer Catalyst Dsbd
pdb|1VRS|F Chain F, Crystal Structure Of The Disulfide-Linked Complex
Between The N- Terminal And C-Terminal Domain Of The
Electron Transfer Catalyst Dsbd
Length = 134
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 73 LLQKSDKPVLVDFYATWC 90
L++ KPV++D YA WC
Sbjct: 26 LVEAKGKPVMLDLYADWC 43
>pdb|3S9F|A Chain A, The Structure Of Tryparedoxin I From Leishmania Major
Length = 165
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 72 DLLQKSDKPVLVDFYATWCGPCQYMAPILNE 102
D+ S K V F A+WC PC+ P L E
Sbjct: 42 DMDSLSGKTVFFYFSASWCPPCRGFTPQLVE 72
>pdb|3IA1|A Chain A, Crystal Structure Of Thio-Disulfide Isomerase From Thermus
Thermophilus
pdb|3IA1|B Chain B, Crystal Structure Of Thio-Disulfide Isomerase From Thermus
Thermophilus
Length = 154
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 26/104 (25%)
Query: 78 DKPVLVDFYATWCGPCQYMAPILNEVGAAL-----------KDKIQVVKIDTEKYP---- 122
KP ++ F+A+WC C+ P L+ V +D +VV + YP
Sbjct: 30 SKPAVIVFWASWCTVCKAEFPGLHRVAEETGVPFYVISREPRDTREVVLEYMKTYPRFIP 89
Query: 123 ----------QIADTYRIEALP-TFILFKDGKPSDRFEGAFSKD 155
++A +++ P TF++ ++GK F G ++
Sbjct: 90 LLASDRDRPHEVAARFKVLGQPWTFVVDREGKVVALFAGRAGRE 133
>pdb|1G55|A Chain A, Structure Of Human Dnmt2, An Enigmatic Dna
Methyltransferase Homologue
Length = 343
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 118 TEKYPQIADTY-RIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIEN 163
T + I D R++ LP +IL ++ K FE + ++D LIQ IEN
Sbjct: 95 TNSFLHILDILPRLQKLPKYILLENVK---GFEVSSTRDLLIQTIEN 138
>pdb|3KH7|A Chain A, Crystal Structure Of The Periplasmic Soluble Domain Of
Reduced Ccmg From Pseudomonas Aeruginosa
pdb|3KH9|A Chain A, Crystal Structure Of The Periplasmic Soluble Domain Of
Oxidized Ccmg From Pseudomonas Aeruginosa
Length = 176
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 79 KPVLVDFYATWCGPCQYMAPILNEV 103
KP LV+ + TWC C+ P L +
Sbjct: 59 KPALVNVWGTWCPSCRVEHPELTRL 83
>pdb|3HZ8|A Chain A, Crystal Structure Of The Oxidized T176v Dsba1 Mutant
Length = 193
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 9/37 (24%), Positives = 23/37 (62%)
Query: 75 QKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKI 111
Q++ K +++F+ +C C ++ P+L++ + KD +
Sbjct: 21 QQAGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDM 57
>pdb|3DVW|A Chain A, Crystal Structure Of Reduced Dsba1 From Neisseria
Meningitidis
Length = 193
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 9/37 (24%), Positives = 23/37 (62%)
Query: 75 QKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKI 111
Q++ K +++F+ +C C ++ P+L++ + KD +
Sbjct: 21 QQAGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDM 57
>pdb|3A3T|A Chain A, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|B Chain B, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|C Chain C, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|D Chain D, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|E Chain E, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|F Chain F, The Oxidoreductase Nmdsba1 From N. Meningitidis
Length = 210
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 9/37 (24%), Positives = 23/37 (62%)
Query: 75 QKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKI 111
Q++ K +++F+ +C C ++ P+L++ + KD +
Sbjct: 38 QQAGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDM 74
>pdb|2LUS|A Chain A, Nmr Structure Of Carcinoscorpius Rotundicauda Thioredoxin
Related Protein 16 And Its Role In Regulating
Transcription Factor Nf-Kb Activity
Length = 143
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 82 LVDFY--ATWCGPCQYMAPILNEVGAALKD 109
++ FY A WC PC+ PIL ++ + L D
Sbjct: 28 IIGFYFSAHWCPPCRGFTPILADMYSELVD 57
>pdb|4EUY|A Chain A, Crystal Structure Of Thioredoxin-Like Protein Bce_0499
From Bacillus Cereus Atcc 10987
Length = 105
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 65 QTFSSLDDLLQKSDKPVLVDFY--ATWCGPCQYMAPILNEVGAALKDKIQVVKIDT--EK 120
TF ++++L ++ LV + CG C L +V L++ V KI+ +
Sbjct: 3 NTFKTIEELATYIEEQQLVLLFIKTENCGVCD---VXLRKVNYVLENYNYVEKIEILLQD 59
Query: 121 YPQIADTYRIEALPTFILFKDGKPSDR 147
+IA Y + PT +LF +GK R
Sbjct: 60 XQEIAGRYAVFTGPTVLLFYNGKEILR 86
>pdb|2ZNM|A Chain A, Oxidoreductase Nmdsba3 From Neisseria Meningitidis
pdb|2ZNM|B Chain B, Oxidoreductase Nmdsba3 From Neisseria Meningitidis
pdb|2ZNM|C Chain C, Oxidoreductase Nmdsba3 From Neisseria Meningitidis
pdb|2ZNM|D Chain D, Oxidoreductase Nmdsba3 From Neisseria Meningitidis
Length = 195
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 21/33 (63%)
Query: 75 QKSDKPVLVDFYATWCGPCQYMAPILNEVGAAL 107
++S K +++F+ +C C + P+L ++G AL
Sbjct: 19 EQSGKIEVLEFFGYFCVHCHHFDPLLLKLGKAL 51
>pdb|3DVX|A Chain A, Crystal Structure Of Reduced Dsba3 From Neisseria
Meningitidis
pdb|3DVX|B Chain B, Crystal Structure Of Reduced Dsba3 From Neisseria
Meningitidis
Length = 196
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 21/33 (63%)
Query: 75 QKSDKPVLVDFYATWCGPCQYMAPILNEVGAAL 107
++S K +++F+ +C C + P+L ++G AL
Sbjct: 20 EQSGKIEVLEFFGYFCVHCHHFDPLLLKLGKAL 52
>pdb|2H19|A Chain A, Crystal Structure Of Resa Cys77ala Variant
pdb|2H19|B Chain B, Crystal Structure Of Resa Cys77ala Variant
Length = 143
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 24/89 (26%)
Query: 79 KPVLVDFYATWCGPCQYMAPIL-NEVGAALKDKIQVVKIDTEK---------------YP 122
K V ++F+ TWC P + P + N+ +++V ++ + +P
Sbjct: 27 KGVFLNFWGTWCEPAKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFP 86
Query: 123 -------QIADTYRIEALP-TFILFKDGK 143
Q+ D Y + LP TF++ +GK
Sbjct: 87 VVLDTDRQVLDAYDVSPLPTTFLINPEGK 115
>pdb|2H1A|A Chain A, Resa C74a Variant
pdb|2H1A|B Chain B, Resa C74a Variant
Length = 143
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 24/89 (26%)
Query: 79 KPVLVDFYATWCGPCQYMAPIL-NEVGAALKDKIQVVKIDTEK---------------YP 122
K V ++F+ TW PC+ P + N+ +++V ++ + +P
Sbjct: 27 KGVFLNFWGTWAEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFP 86
Query: 123 -------QIADTYRIEALP-TFILFKDGK 143
Q+ D Y + LP TF++ +GK
Sbjct: 87 VVLDTDRQVLDAYDVSPLPTTFLINPEGK 115
>pdb|2K8V|A Chain A, Solution Structure Of Oxidised Erp18
Length = 157
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 77 SDKPVLVDFYATWCGPCQYMAPILNE 102
S P++V + +WCG C+ + P E
Sbjct: 38 SGLPLMVIIHKSWCGACKALKPKFAE 63
>pdb|1SEN|A Chain A, Endoplasmic Reticulum Protein Rp19 O95881
Length = 164
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 77 SDKPVLVDFYATWCGPCQYMAPILNE 102
S P++V + +WCG C+ + P E
Sbjct: 45 SGLPLMVIIHKSWCGACKALKPKFAE 70
>pdb|1Z5Y|E Chain E, Crystal Structure Of The Disulfide-linked Complex Between
The N-terminal Domain Of The Electron Transfer Catalyst
Dsbd And The Cytochrome C Biogenesis Protein Ccmg
Length = 149
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 79 KPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKID 117
KPVL++ +ATWC + LN++ A I+VV ++
Sbjct: 27 KPVLLNVWATWCPTSRAEHQYLNQLSA---QGIRVVGMN 62
>pdb|4EVM|A Chain A, 1.5 Angstrom Crystal Structure Of Soluble Domain Of
Membrane-Anchored Thioredoxin Family Protein From
Streptococcus Pneumoniae Strain Canada Mdr_19a
Length = 138
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 42/114 (36%), Gaps = 29/114 (25%)
Query: 79 KPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKI---------------------D 117
K V + F+A+WC C P +E+ D V+ + D
Sbjct: 23 KKVYLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKGLD 82
Query: 118 TEKYPQIAD-------TYRIEALPT-FILFKDGKPSDRFEGAFSKDQLIQRIEN 163
+ P + D TY + + PT + K+GK G KD ++Q ++
Sbjct: 83 YKNLPVLVDPSGKLLETYGVRSYPTQAFIDKEGKLVKTHPGFMEKDAILQTLKE 136
>pdb|2LRN|A Chain A, Solution Structure Of A Thiol:disulfide Interchange
Protein From Bacteroides Sp.
pdb|4GRF|A Chain A, Crystal Structure Of Thioredoxin Domain Of Thiol-Disulfide
Oxidoreductase Bvu-2223 (Target Efi-501010) From
Bacteroides Vulgatus
Length = 152
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 69 SLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDK 110
SL+D K VLVDF+ C C+ P L + A KDK
Sbjct: 23 SLNDF---KGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDK 61
>pdb|2HYX|A Chain A, Structure Of The C-Terminal Domain Of Dipz From
Mycobacterium Tuberculosis
pdb|2HYX|B Chain B, Structure Of The C-Terminal Domain Of Dipz From
Mycobacterium Tuberculosis
pdb|2HYX|C Chain C, Structure Of The C-Terminal Domain Of Dipz From
Mycobacterium Tuberculosis
pdb|2HYX|D Chain D, Structure Of The C-Terminal Domain Of Dipz From
Mycobacterium Tuberculosis
Length = 352
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 72 DLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDK-IQVVKIDTEKY 121
DL K VL+DF+A C CQ P + A KD + V+ + T +Y
Sbjct: 76 DLKSLRGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEY 126
>pdb|2L73|A Chain A, Structure Of The Noxo1b Px Domain
Length = 149
Score = 26.6 bits (57), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 14/85 (16%)
Query: 64 KQTFSSLDDLLQKSDK--PVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKY 121
K+TF LL++SD+ P L+D AP+L VG + ++ ++T
Sbjct: 58 KETFPVEAGLLRRSDRVLPKLLD------------APLLGRVGRTSRGLARLQLLETYSR 105
Query: 122 PQIADTYRIEALPTFILFKDGKPSD 146
+A R+ PT F +P D
Sbjct: 106 RLLATAERVARSPTITGFFAPQPLD 130
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,478,977
Number of Sequences: 62578
Number of extensions: 126272
Number of successful extensions: 619
Number of sequences better than 100.0: 209
Number of HSP's better than 100.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 361
Number of HSP's gapped (non-prelim): 219
length of query: 169
length of database: 14,973,337
effective HSP length: 92
effective length of query: 77
effective length of database: 9,216,161
effective search space: 709644397
effective search space used: 709644397
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)