Query 030928
Match_columns 169
No_of_seqs 175 out of 1390
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 06:41:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030928.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030928hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0910 Thioredoxin-like prote 100.0 1.6E-29 3.5E-34 172.1 12.7 108 59-166 42-149 (150)
2 cd03065 PDI_b_Calsequestrin_N 99.9 1.9E-25 4.2E-30 149.7 11.9 104 61-165 10-119 (120)
3 cd03006 PDI_a_EFP1_N PDIa fami 99.9 2.3E-25 5E-30 148.3 11.4 100 61-160 10-112 (113)
4 PF00085 Thioredoxin: Thioredo 99.9 7.9E-25 1.7E-29 143.2 13.5 101 64-164 3-103 (103)
5 cd02954 DIM1 Dim1 family; Dim1 99.9 1.7E-25 3.7E-30 148.0 10.4 99 67-165 2-111 (114)
6 cd03004 PDI_a_ERdj5_C PDIa fam 99.9 3.6E-25 7.8E-30 145.7 11.6 100 62-161 3-104 (104)
7 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 5.8E-25 1.3E-29 144.0 11.5 98 62-160 3-100 (101)
8 PHA02278 thioredoxin-like prot 99.9 1.4E-24 3.1E-29 142.3 12.4 94 66-160 3-100 (103)
9 PRK09381 trxA thioredoxin; Pro 99.9 3.2E-24 7E-29 142.3 13.4 105 62-166 5-109 (109)
10 COG3118 Thioredoxin domain-con 99.9 1.2E-24 2.7E-29 162.8 11.8 108 60-167 23-132 (304)
11 cd02956 ybbN ybbN protein fami 99.9 3.3E-24 7.2E-29 139.1 12.1 94 69-162 2-96 (96)
12 cd02963 TRX_DnaJ TRX domain, D 99.9 3.9E-24 8.5E-29 142.5 11.7 100 65-164 9-111 (111)
13 cd02985 TRX_CDSP32 TRX family, 99.9 9.1E-24 2E-28 138.9 12.9 95 66-162 2-100 (103)
14 PRK10996 thioredoxin 2; Provis 99.9 3.8E-23 8.3E-28 142.9 13.6 101 64-165 39-139 (139)
15 cd02996 PDI_a_ERp44 PDIa famil 99.9 2.1E-23 4.5E-28 138.2 11.6 99 62-161 3-108 (108)
16 cd02965 HyaE HyaE family; HyaE 99.9 3E-23 6.4E-28 136.5 11.7 97 62-159 12-110 (111)
17 cd02948 TRX_NDPK TRX domain, T 99.9 5E-23 1.1E-27 135.1 12.7 97 65-164 5-102 (102)
18 cd03002 PDI_a_MPD1_like PDI fa 99.9 2.9E-23 6.3E-28 137.5 11.7 100 63-162 3-109 (109)
19 PLN00410 U5 snRNP protein, DIM 99.9 4.6E-23 1E-27 141.4 12.8 103 65-167 9-122 (142)
20 cd02999 PDI_a_ERp44_like PDIa 99.9 2.2E-23 4.8E-28 136.3 10.7 91 69-161 8-100 (100)
21 cd02994 PDI_a_TMX PDIa family, 99.9 5.3E-23 1.2E-27 134.6 12.2 98 62-163 3-101 (101)
22 KOG0907 Thioredoxin [Posttrans 99.9 2.8E-23 6.1E-28 136.4 10.5 92 71-164 14-105 (106)
23 cd03005 PDI_a_ERp46 PDIa famil 99.9 1.1E-22 2.4E-27 133.0 11.8 97 63-161 3-102 (102)
24 cd03001 PDI_a_P5 PDIa family, 99.9 1.7E-22 3.7E-27 132.4 12.3 100 62-161 2-102 (103)
25 TIGR01068 thioredoxin thioredo 99.9 2.9E-22 6.3E-27 130.4 13.3 100 66-165 2-101 (101)
26 PTZ00443 Thioredoxin domain-co 99.9 1.3E-22 2.9E-27 149.6 12.9 107 60-166 30-140 (224)
27 cd02950 TxlA TRX-like protein 99.9 3E-22 6.6E-27 138.8 13.4 99 69-168 12-113 (142)
28 TIGR01126 pdi_dom protein disu 99.9 3.5E-22 7.6E-27 130.5 12.2 99 66-165 2-102 (102)
29 cd02997 PDI_a_PDIR PDIa family 99.9 6.6E-22 1.4E-26 129.7 12.0 98 63-161 3-104 (104)
30 cd02986 DLP Dim1 family, Dim1- 99.9 1.3E-21 2.7E-26 128.7 12.7 99 68-166 3-112 (114)
31 cd02949 TRX_NTR TRX domain, no 99.9 1.1E-21 2.4E-26 127.5 12.1 93 70-162 5-97 (97)
32 cd02962 TMX2 TMX2 family; comp 99.9 1.5E-21 3.4E-26 136.1 12.7 91 60-150 28-126 (152)
33 cd02984 TRX_PICOT TRX domain, 99.9 2.6E-21 5.7E-26 125.5 11.9 94 67-161 2-96 (97)
34 cd02957 Phd_like Phosducin (Ph 99.9 2E-21 4.4E-26 129.7 11.5 88 63-152 7-96 (113)
35 cd02998 PDI_a_ERp38 PDIa famil 99.9 1.8E-21 3.9E-26 127.7 10.8 99 63-161 3-105 (105)
36 cd02995 PDI_a_PDI_a'_C PDIa fa 99.9 2.1E-21 4.5E-26 127.3 10.8 98 63-161 3-104 (104)
37 cd02953 DsbDgamma DsbD gamma f 99.9 3.4E-21 7.3E-26 126.7 10.2 94 68-162 2-104 (104)
38 cd02993 PDI_a_APS_reductase PD 99.9 7.4E-21 1.6E-25 126.2 11.8 100 62-161 3-109 (109)
39 cd03000 PDI_a_TMX3 PDIa family 99.9 9.5E-21 2.1E-25 124.6 12.1 94 68-164 7-103 (104)
40 cd02989 Phd_like_TxnDC9 Phosdu 99.9 1.1E-20 2.5E-25 126.0 11.1 84 67-152 12-95 (113)
41 cd02961 PDI_a_family Protein D 99.8 2E-20 4.3E-25 121.3 11.0 97 64-161 2-101 (101)
42 cd02975 PfPDO_like_N Pyrococcu 99.8 2.5E-20 5.4E-25 124.4 11.3 96 70-167 15-112 (113)
43 cd02951 SoxW SoxW family; SoxW 99.8 7.2E-20 1.6E-24 124.2 12.3 98 69-167 5-121 (125)
44 PTZ00051 thioredoxin; Provisio 99.8 7.7E-20 1.7E-24 118.8 11.2 90 66-158 7-96 (98)
45 cd02987 Phd_like_Phd Phosducin 99.8 9.4E-20 2E-24 130.3 12.4 100 62-163 64-173 (175)
46 TIGR01295 PedC_BrcD bacterioci 99.8 4.5E-19 9.8E-24 119.8 12.4 99 61-162 7-121 (122)
47 cd02947 TRX_family TRX family; 99.8 5.3E-19 1.2E-23 112.5 11.7 92 69-162 2-93 (93)
48 cd02992 PDI_a_QSOX PDIa family 99.8 5.7E-19 1.2E-23 118.1 11.4 83 62-144 3-90 (114)
49 KOG0190 Protein disulfide isom 99.8 1.9E-19 4.2E-24 144.3 9.5 106 58-164 23-131 (493)
50 TIGR01130 ER_PDI_fam protein d 99.8 7.3E-19 1.6E-23 142.6 12.9 104 62-166 3-110 (462)
51 KOG0908 Thioredoxin-like prote 99.8 6.8E-19 1.5E-23 128.5 9.5 99 66-166 8-107 (288)
52 TIGR00411 redox_disulf_1 small 99.8 2.5E-18 5.5E-23 108.0 10.9 81 81-165 2-82 (82)
53 PTZ00102 disulphide isomerase; 99.8 2E-18 4.4E-23 140.9 13.1 105 60-166 32-139 (477)
54 TIGR00424 APS_reduc 5'-adenyly 99.8 2.1E-18 4.5E-23 138.8 12.4 105 60-164 351-462 (463)
55 PTZ00102 disulphide isomerase; 99.8 1.9E-18 4.1E-23 141.1 12.4 106 61-166 358-466 (477)
56 cd02988 Phd_like_VIAF Phosduci 99.8 2.9E-18 6.3E-23 124.2 11.3 100 60-163 82-190 (192)
57 PLN02309 5'-adenylylsulfate re 99.8 3.4E-18 7.3E-23 137.5 12.7 105 60-164 345-456 (457)
58 cd03007 PDI_a_ERp29_N PDIa fam 99.8 2.4E-18 5.1E-23 114.3 9.6 97 63-164 4-115 (116)
59 PRK15412 thiol:disulfide inter 99.8 1.7E-17 3.7E-22 119.9 12.8 110 55-167 43-178 (185)
60 cd02982 PDI_b'_family Protein 99.8 1E-17 2.2E-22 109.7 10.3 88 78-165 12-103 (103)
61 cd02952 TRP14_like Human TRX-r 99.8 1.1E-17 2.4E-22 112.0 9.8 82 64-145 6-103 (119)
62 cd02959 ERp19 Endoplasmic reti 99.7 5E-18 1.1E-22 113.9 7.3 99 68-166 9-114 (117)
63 PTZ00062 glutaredoxin; Provisi 99.7 2.6E-17 5.6E-22 119.8 11.5 90 66-165 5-94 (204)
64 TIGR00385 dsbE periplasmic pro 99.7 1E-16 2.3E-21 114.6 12.2 109 55-166 38-172 (173)
65 PRK14018 trifunctional thiored 99.7 1.1E-16 2.4E-21 130.5 12.5 105 56-163 37-171 (521)
66 PF13098 Thioredoxin_2: Thiore 99.7 3E-17 6.4E-22 109.1 7.4 86 76-161 3-112 (112)
67 TIGR02187 GlrX_arch Glutaredox 99.7 9.4E-17 2E-21 118.6 10.6 89 78-166 19-112 (215)
68 TIGR02738 TrbB type-F conjugat 99.7 2.9E-16 6.3E-21 109.8 11.0 86 78-165 50-153 (153)
69 TIGR01130 ER_PDI_fam protein d 99.7 2.1E-16 4.6E-21 128.2 11.0 104 61-166 347-455 (462)
70 cd03010 TlpA_like_DsbE TlpA-li 99.7 4.3E-16 9.3E-21 105.8 10.5 79 77-157 24-126 (127)
71 TIGR02187 GlrX_arch Glutaredox 99.7 7.2E-16 1.6E-20 113.9 12.1 82 78-163 133-214 (215)
72 PRK03147 thiol-disulfide oxido 99.7 1.4E-15 3E-20 108.5 12.7 110 54-164 38-171 (173)
73 PRK00293 dipZ thiol:disulfide 99.7 6.3E-16 1.4E-20 128.5 12.3 99 66-165 459-570 (571)
74 KOG0190 Protein disulfide isom 99.7 1.8E-16 4E-21 127.3 7.9 101 62-164 368-472 (493)
75 KOG0912 Thiol-disulfide isomer 99.7 3.5E-16 7.5E-21 117.4 8.1 99 67-166 3-107 (375)
76 TIGR00412 redox_disulf_2 small 99.7 1.3E-15 2.8E-20 94.5 9.5 73 82-161 2-75 (76)
77 cd02955 SSP411 TRX domain, SSP 99.7 2.2E-15 4.8E-20 101.7 11.1 98 66-164 4-118 (124)
78 KOG0191 Thioredoxin/protein di 99.7 9.5E-16 2.1E-20 122.3 10.7 101 67-167 36-136 (383)
79 PHA02125 thioredoxin-like prot 99.6 1.9E-15 4.1E-20 93.6 9.2 71 82-161 2-73 (75)
80 cd03008 TryX_like_RdCVF Trypar 99.6 1.8E-15 3.9E-20 104.8 9.9 71 77-147 24-128 (146)
81 PRK11509 hydrogenase-1 operon 99.6 7E-15 1.5E-19 99.5 12.1 102 66-168 23-127 (132)
82 KOG4277 Uncharacterized conser 99.6 5.3E-16 1.2E-20 116.6 6.9 86 77-163 42-130 (468)
83 TIGR02740 TraF-like TraF-like 99.6 7E-15 1.5E-19 111.9 12.6 88 77-166 165-265 (271)
84 PLN02919 haloacid dehalogenase 99.6 3.9E-15 8.5E-20 131.1 12.8 90 77-166 419-537 (1057)
85 PLN02399 phospholipid hydroper 99.6 1E-14 2.2E-19 108.5 12.8 113 53-166 75-235 (236)
86 PF13905 Thioredoxin_8: Thiore 99.6 7.7E-15 1.7E-19 94.7 9.5 67 78-144 1-95 (95)
87 PTZ00056 glutathione peroxidas 99.6 1E-14 2.3E-19 106.4 10.0 113 55-168 17-181 (199)
88 cd02964 TryX_like_family Trypa 99.6 9.5E-15 2.1E-19 100.0 9.1 71 77-147 16-115 (132)
89 cd03009 TryX_like_TryX_NRX Try 99.6 1.1E-14 2.4E-19 99.4 9.3 71 77-147 17-115 (131)
90 PRK13728 conjugal transfer pro 99.6 2.5E-14 5.4E-19 102.0 11.1 84 82-167 73-173 (181)
91 cd03011 TlpA_like_ScsD_MtbDsbE 99.6 2.7E-14 5.9E-19 96.3 10.6 82 77-160 19-121 (123)
92 cd02973 TRX_GRX_like Thioredox 99.6 1.6E-14 3.5E-19 87.4 8.3 62 81-145 2-63 (67)
93 cd02958 UAS UAS family; UAS is 99.6 7.9E-14 1.7E-18 93.1 11.9 96 71-166 10-112 (114)
94 cd03026 AhpF_NTD_C TRX-GRX-lik 99.6 6.3E-14 1.4E-18 89.5 9.9 76 78-158 12-87 (89)
95 PF08534 Redoxin: Redoxin; In 99.6 2.8E-14 6.1E-19 99.1 8.9 84 76-159 26-144 (146)
96 cd02967 mauD Methylamine utili 99.5 3.4E-14 7.4E-19 94.5 8.0 71 77-147 20-111 (114)
97 cd02966 TlpA_like_family TlpA- 99.5 8.3E-14 1.8E-18 91.7 9.4 74 77-150 18-116 (116)
98 PLN02412 probable glutathione 99.5 1.3E-13 2.8E-18 98.1 10.8 112 55-167 7-166 (167)
99 TIGR01626 ytfJ_HI0045 conserve 99.5 9E-14 2E-18 99.6 10.0 82 77-161 58-176 (184)
100 KOG1731 FAD-dependent sulfhydr 99.5 1.1E-14 2.4E-19 117.4 5.9 115 52-166 31-154 (606)
101 cd03012 TlpA_like_DipZ_like Tl 99.5 1.6E-13 3.5E-18 93.1 9.6 75 77-151 22-125 (126)
102 TIGR02661 MauD methylamine deh 99.5 2.1E-13 4.6E-18 98.8 10.3 108 55-164 50-178 (189)
103 cd02969 PRX_like1 Peroxiredoxi 99.5 6.8E-13 1.5E-17 94.6 12.2 92 77-168 24-155 (171)
104 KOG0191 Thioredoxin/protein di 99.5 1.9E-13 4.1E-18 109.1 9.8 107 61-167 145-254 (383)
105 cd02960 AGR Anterior Gradient 99.5 4E-13 8.7E-18 90.9 8.2 86 66-152 11-100 (130)
106 smart00594 UAS UAS domain. 99.4 3.8E-12 8.2E-17 86.0 11.2 95 67-161 16-121 (122)
107 TIGR02540 gpx7 putative glutat 99.4 2.5E-12 5.3E-17 90.2 10.3 89 77-165 21-153 (153)
108 cd00340 GSH_Peroxidase Glutath 99.4 1.5E-12 3.3E-17 91.1 8.2 83 77-160 21-151 (152)
109 COG4232 Thiol:disulfide interc 99.4 2.9E-12 6.2E-17 104.4 10.3 96 69-165 464-568 (569)
110 PTZ00256 glutathione peroxidas 99.4 5.4E-12 1.2E-16 91.0 10.2 111 55-166 18-182 (183)
111 COG0526 TrxA Thiol-disulfide i 99.3 1.3E-11 2.9E-16 80.9 8.8 88 78-165 32-124 (127)
112 cd03017 PRX_BCP Peroxiredoxin 99.3 1.8E-11 4E-16 84.1 9.8 85 77-161 22-139 (140)
113 PF13899 Thioredoxin_7: Thiore 99.3 9.2E-12 2E-16 78.3 6.6 68 72-140 11-81 (82)
114 PRK00522 tpx lipid hydroperoxi 99.2 1.8E-10 3.8E-15 82.0 11.3 106 54-161 21-165 (167)
115 PF00578 AhpC-TSA: AhpC/TSA fa 99.2 5.3E-11 1.1E-15 80.1 7.5 90 56-146 4-123 (124)
116 PRK09437 bcp thioredoxin-depen 99.2 2.2E-10 4.8E-15 80.2 10.9 107 55-162 8-150 (154)
117 COG2143 Thioredoxin-related pr 99.2 2.7E-10 5.9E-15 78.2 10.6 88 76-163 40-147 (182)
118 cd03015 PRX_Typ2cys Peroxiredo 99.2 1.5E-10 3.2E-15 82.7 9.9 89 77-165 28-157 (173)
119 cd03014 PRX_Atyp2cys Peroxired 99.2 1.6E-10 3.4E-15 79.9 9.2 84 77-161 25-141 (143)
120 PF13192 Thioredoxin_3: Thiore 99.2 3.3E-10 7.1E-15 70.2 9.5 72 84-162 4-76 (76)
121 TIGR02196 GlrX_YruB Glutaredox 99.2 2.1E-10 4.6E-15 69.8 8.4 68 82-161 2-73 (74)
122 cd03018 PRX_AhpE_like Peroxire 99.2 5.4E-10 1.2E-14 77.6 10.8 84 79-162 29-148 (149)
123 TIGR03137 AhpC peroxiredoxin. 99.2 4.5E-10 9.7E-15 81.3 10.6 87 77-163 30-154 (187)
124 cd02970 PRX_like2 Peroxiredoxi 99.1 6E-10 1.3E-14 77.2 10.1 73 78-150 23-148 (149)
125 TIGR02200 GlrX_actino Glutared 99.1 4E-10 8.8E-15 69.5 8.1 70 82-162 2-76 (77)
126 PF02114 Phosducin: Phosducin; 99.1 4.2E-10 9E-15 85.3 9.3 97 66-164 132-237 (265)
127 PF14595 Thioredoxin_9: Thiore 99.1 3.9E-10 8.4E-15 76.8 8.2 81 70-151 33-117 (129)
128 KOG2501 Thioredoxin, nucleored 99.1 5.4E-10 1.2E-14 77.3 7.9 70 77-146 32-130 (157)
129 cd02991 UAS_ETEA UAS family, E 99.1 6.2E-09 1.3E-13 69.6 11.9 95 69-166 8-114 (116)
130 KOG0913 Thiol-disulfide isomer 99.1 5.3E-11 1.1E-15 86.7 1.6 99 61-163 25-124 (248)
131 PF13728 TraF: F plasmid trans 99.1 3.4E-09 7.5E-14 78.2 11.2 82 78-161 120-214 (215)
132 PRK10877 protein disulfide iso 99.0 1.2E-09 2.5E-14 81.7 8.4 80 78-164 107-230 (232)
133 KOG3414 Component of the U4/U6 99.0 8.3E-09 1.8E-13 68.3 11.3 100 67-166 11-121 (142)
134 cd01659 TRX_superfamily Thiore 99.0 1.6E-09 3.4E-14 63.3 7.3 60 82-142 1-63 (69)
135 TIGR02180 GRX_euk Glutaredoxin 99.0 1.7E-09 3.8E-14 67.7 7.7 60 82-145 1-65 (84)
136 cd02968 SCO SCO (an acronym fo 99.0 1.3E-09 2.9E-14 75.0 7.6 43 77-119 21-68 (142)
137 cd02971 PRX_family Peroxiredox 99.0 2.9E-09 6.3E-14 73.0 9.2 77 77-153 21-131 (140)
138 PRK10606 btuE putative glutath 99.0 2.5E-09 5.4E-14 77.0 9.0 42 77-119 24-66 (183)
139 PRK13190 putative peroxiredoxi 99.0 4.9E-09 1.1E-13 76.8 10.6 90 77-166 26-155 (202)
140 PRK10382 alkyl hydroperoxide r 99.0 4.3E-09 9.4E-14 76.1 9.8 88 77-164 30-155 (187)
141 PRK11200 grxA glutaredoxin 1; 99.0 8.4E-09 1.8E-13 65.1 8.5 76 81-165 2-83 (85)
142 KOG0914 Thioredoxin-like prote 98.9 1.2E-09 2.5E-14 79.0 4.9 81 69-149 134-222 (265)
143 PRK15000 peroxidase; Provision 98.9 1.3E-08 2.9E-13 74.3 10.6 88 77-164 33-161 (200)
144 PF03190 Thioredox_DsbH: Prote 98.9 7.4E-09 1.6E-13 72.6 8.5 81 66-147 26-118 (163)
145 PF06110 DUF953: Eukaryotic pr 98.9 1.5E-08 3.2E-13 67.7 9.5 78 66-143 4-100 (119)
146 TIGR03143 AhpF_homolog putativ 98.9 1.6E-08 3.6E-13 84.4 11.3 79 78-161 475-554 (555)
147 PRK13599 putative peroxiredoxi 98.9 2.8E-08 6.1E-13 73.4 10.8 88 77-164 27-155 (215)
148 TIGR02739 TraF type-F conjugat 98.9 3.7E-08 8E-13 74.2 11.4 87 78-166 150-249 (256)
149 cd03016 PRX_1cys Peroxiredoxin 98.9 4.1E-08 8.9E-13 72.0 11.1 85 80-164 28-153 (203)
150 KOG1672 ATP binding protein [P 98.9 7.9E-09 1.7E-13 73.5 6.7 84 66-151 73-156 (211)
151 PRK13189 peroxiredoxin; Provis 98.9 4.9E-08 1.1E-12 72.5 10.9 89 77-165 34-163 (222)
152 cd03020 DsbA_DsbC_DsbG DsbA fa 98.8 1.1E-08 2.3E-13 74.6 7.1 76 78-161 77-197 (197)
153 PTZ00137 2-Cys peroxiredoxin; 98.8 1.1E-07 2.3E-12 72.0 11.4 88 77-164 97-224 (261)
154 PF13848 Thioredoxin_6: Thiore 98.8 1.2E-07 2.6E-12 67.8 10.8 102 62-163 79-184 (184)
155 PRK11657 dsbG disulfide isomer 98.8 4.6E-08 1E-12 73.9 8.7 82 78-162 117-249 (251)
156 cd02976 NrdH NrdH-redoxin (Nrd 98.8 6.7E-08 1.5E-12 58.5 7.9 67 82-160 2-72 (73)
157 PRK13191 putative peroxiredoxi 98.8 1.3E-07 2.9E-12 69.8 10.9 88 77-164 32-160 (215)
158 PRK15317 alkyl hydroperoxide r 98.8 1.1E-07 2.3E-12 79.0 11.4 81 78-163 116-196 (517)
159 PF13462 Thioredoxin_4: Thiore 98.8 2.2E-07 4.8E-12 65.2 11.5 81 78-163 12-162 (162)
160 TIGR02183 GRXA Glutaredoxin, G 98.8 5.8E-08 1.3E-12 61.5 7.5 76 82-166 2-83 (86)
161 cd03023 DsbA_Com1_like DsbA fa 98.8 1E-07 2.2E-12 66.1 9.3 79 78-162 5-154 (154)
162 PRK13703 conjugal pilus assemb 98.7 1.9E-07 4.1E-12 70.0 10.9 87 78-166 143-242 (248)
163 PF11009 DUF2847: Protein of u 98.7 2.5E-07 5.4E-12 60.2 9.6 93 65-157 5-104 (105)
164 PF02966 DIM1: Mitosis protein 98.7 7.9E-07 1.7E-11 59.7 11.9 98 68-166 9-118 (133)
165 KOG3425 Uncharacterized conser 98.7 1.2E-07 2.5E-12 62.4 7.5 75 67-141 12-104 (128)
166 TIGR03140 AhpF alkyl hydropero 98.7 3.1E-07 6.6E-12 76.2 11.5 94 66-164 105-198 (515)
167 PF07449 HyaE: Hydrogenase-1 e 98.7 1.3E-07 2.8E-12 61.9 7.1 93 63-157 12-107 (107)
168 PRK10954 periplasmic protein d 98.7 2.6E-07 5.7E-12 67.9 9.4 40 78-117 37-79 (207)
169 PF01216 Calsequestrin: Calseq 98.6 9.8E-07 2.1E-11 68.2 12.0 106 59-166 33-145 (383)
170 TIGR02190 GlrX-dom Glutaredoxi 98.6 3.7E-07 7.9E-12 56.8 8.0 70 78-161 6-78 (79)
171 cd03072 PDI_b'_ERp44 PDIb' fam 98.6 8.3E-07 1.8E-11 58.9 10.0 102 64-168 3-111 (111)
172 KOG0911 Glutaredoxin-related p 98.6 4.1E-08 8.8E-13 71.5 3.3 82 76-158 15-96 (227)
173 PTZ00253 tryparedoxin peroxida 98.6 9.8E-07 2.1E-11 64.5 10.6 88 77-164 35-163 (199)
174 cd03419 GRX_GRXh_1_2_like Glut 98.6 4.7E-07 1E-11 56.3 7.8 58 82-145 2-64 (82)
175 cd03019 DsbA_DsbA DsbA family, 98.6 5.9E-07 1.3E-11 64.0 9.2 39 77-115 14-52 (178)
176 PF00462 Glutaredoxin: Glutare 98.6 4.2E-07 9E-12 53.4 7.0 56 82-145 1-60 (60)
177 TIGR02194 GlrX_NrdH Glutaredox 98.6 5.5E-07 1.2E-11 54.9 7.4 67 82-159 1-70 (72)
178 cd02983 P5_C P5 family, C-term 98.4 2.6E-06 5.5E-11 58.1 8.8 74 95-168 41-118 (130)
179 PF05768 DUF836: Glutaredoxin- 98.4 2.9E-06 6.3E-11 53.0 8.1 78 82-162 2-81 (81)
180 cd03029 GRX_hybridPRX5 Glutare 98.4 4.5E-06 9.8E-11 50.8 8.6 66 82-161 3-71 (72)
181 PHA03050 glutaredoxin; Provisi 98.4 1.6E-06 3.5E-11 57.1 7.0 59 82-145 15-80 (108)
182 PRK10329 glutaredoxin-like pro 98.4 6.9E-06 1.5E-10 51.3 9.5 72 82-165 3-77 (81)
183 cd02066 GRX_family Glutaredoxi 98.4 2.1E-06 4.5E-11 51.5 6.6 57 82-146 2-62 (72)
184 TIGR03143 AhpF_homolog putativ 98.4 5E-06 1.1E-10 69.7 10.8 98 69-167 356-456 (555)
185 TIGR02189 GlrX-like_plant Glut 98.3 1.9E-06 4.1E-11 56.0 6.2 56 82-145 10-72 (99)
186 cd03073 PDI_b'_ERp72_ERp57 PDI 98.3 9.6E-06 2.1E-10 53.8 9.6 74 91-165 31-111 (111)
187 cd03418 GRX_GRXb_1_3_like Glut 98.3 5E-06 1.1E-10 50.8 7.3 56 82-145 2-62 (75)
188 cd03027 GRX_DEP Glutaredoxin ( 98.3 5.3E-06 1.2E-10 50.6 7.3 57 82-146 3-63 (73)
189 TIGR02181 GRX_bact Glutaredoxi 98.3 3.2E-06 6.9E-11 52.4 6.1 56 82-145 1-60 (79)
190 COG0695 GrxC Glutaredoxin and 98.2 1.1E-05 2.4E-10 50.3 7.7 66 82-158 3-74 (80)
191 COG1225 Bcp Peroxiredoxin [Pos 98.2 2.3E-05 4.9E-10 54.8 9.7 110 54-164 7-155 (157)
192 cd02972 DsbA_family DsbA famil 98.1 1.2E-05 2.6E-10 50.9 6.5 58 82-139 1-90 (98)
193 TIGR00365 monothiol glutaredox 98.1 3.3E-05 7.1E-10 49.9 8.3 50 88-145 25-78 (97)
194 cd02981 PDI_b_family Protein D 98.1 0.00012 2.7E-09 46.8 10.2 88 68-163 8-96 (97)
195 PRK10638 glutaredoxin 3; Provi 98.0 3.4E-05 7.3E-10 48.3 6.6 56 82-145 4-63 (83)
196 PF00837 T4_deiodinase: Iodoth 97.9 0.00012 2.7E-09 54.3 9.6 108 54-164 76-236 (237)
197 cd03028 GRX_PICOT_like Glutare 97.9 6.4E-05 1.4E-09 47.8 6.7 58 79-145 8-74 (90)
198 PRK10824 glutaredoxin-4; Provi 97.9 9.4E-05 2E-09 49.2 7.2 65 70-145 8-81 (115)
199 KOG3171 Conserved phosducin-li 97.8 8.2E-05 1.8E-09 54.1 6.4 99 63-163 142-249 (273)
200 KOG1752 Glutaredoxin and relat 97.8 0.0003 6.4E-09 46.0 8.1 68 69-145 6-78 (104)
201 KOG2603 Oligosaccharyltransfer 97.8 0.00021 4.5E-09 54.8 8.4 104 62-165 42-166 (331)
202 PF01323 DSBA: DSBA-like thior 97.8 0.00067 1.5E-08 48.8 10.8 36 81-116 1-37 (193)
203 PF07912 ERp29_N: ERp29, N-ter 97.7 0.0017 3.7E-08 43.3 11.2 97 65-164 9-118 (126)
204 COG1651 DsbG Protein-disulfide 97.6 0.00091 2E-08 50.2 10.0 38 123-165 206-243 (244)
205 PF13743 Thioredoxin_5: Thiore 97.6 0.00042 9.2E-09 49.6 7.6 32 84-115 2-33 (176)
206 cd03013 PRX5_like Peroxiredoxi 97.5 0.00074 1.6E-08 47.4 7.8 73 79-151 31-140 (155)
207 cd03067 PDI_b_PDIR_N PDIb fami 97.5 0.0019 4.1E-08 41.5 8.8 96 66-163 8-110 (112)
208 PRK12759 bifunctional gluaredo 97.5 0.00039 8.5E-09 56.3 6.9 56 82-145 4-71 (410)
209 PTZ00062 glutaredoxin; Provisi 97.4 0.00098 2.1E-08 48.9 7.9 50 88-145 126-179 (204)
210 PF13848 Thioredoxin_6: Thiore 97.4 0.002 4.3E-08 45.8 9.3 66 95-164 7-74 (184)
211 COG0386 BtuE Glutathione perox 97.4 0.0027 5.9E-08 44.0 9.2 90 76-166 23-161 (162)
212 KOG3170 Conserved phosducin-li 97.3 0.0019 4.1E-08 46.7 7.8 95 65-163 96-199 (240)
213 cd02974 AhpF_NTD_N Alkyl hydro 97.1 0.013 2.9E-07 37.5 9.8 85 68-165 8-94 (94)
214 COG1999 Uncharacterized protei 97.1 0.011 2.5E-07 43.4 10.6 108 59-167 49-206 (207)
215 COG1331 Highly conserved prote 97.1 0.0035 7.5E-08 53.1 8.3 82 64-146 30-123 (667)
216 cd03031 GRX_GRX_like Glutaredo 97.0 0.0072 1.6E-07 42.0 8.4 56 82-145 2-71 (147)
217 cd03066 PDI_b_Calsequestrin_mi 96.8 0.043 9.3E-07 35.5 10.0 92 66-164 7-100 (102)
218 PRK15317 alkyl hydroperoxide r 96.6 0.023 4.9E-07 47.5 9.8 88 68-167 8-96 (517)
219 cd03069 PDI_b_ERp57 PDIb famil 96.4 0.074 1.6E-06 34.5 9.5 90 66-164 7-103 (104)
220 TIGR03140 AhpF alkyl hydropero 96.4 0.038 8.1E-07 46.2 9.9 89 68-167 8-97 (515)
221 cd03040 GST_N_mPGES2 GST_N fam 96.4 0.022 4.7E-07 34.6 6.5 73 82-165 2-76 (77)
222 KOG2640 Thioredoxin [Function 96.4 0.0015 3.2E-08 50.2 1.2 88 78-166 76-163 (319)
223 COG3019 Predicted metal-bindin 96.3 0.061 1.3E-06 36.7 8.6 74 80-164 26-103 (149)
224 COG2761 FrnE Predicted dithiol 96.3 0.079 1.7E-06 39.3 9.9 40 125-168 177-216 (225)
225 cd03041 GST_N_2GST_N GST_N fam 96.1 0.034 7.5E-07 33.9 6.3 70 82-163 2-75 (77)
226 cd03037 GST_N_GRX2 GST_N famil 96.1 0.029 6.3E-07 33.5 5.8 68 84-162 3-70 (71)
227 cd02978 KaiB_like KaiB-like fa 96.0 0.031 6.7E-07 33.9 5.6 58 81-138 3-61 (72)
228 COG3634 AhpF Alkyl hydroperoxi 95.9 0.052 1.1E-06 43.1 7.5 82 77-163 115-196 (520)
229 cd02990 UAS_FAF1 UAS family, F 95.7 0.4 8.7E-06 32.9 11.8 88 76-166 19-134 (136)
230 cd03060 GST_N_Omega_like GST_N 95.7 0.057 1.2E-06 32.3 5.8 58 83-145 2-60 (71)
231 PF02630 SCO1-SenC: SCO1/SenC; 95.5 0.055 1.2E-06 38.6 6.1 66 54-120 29-98 (174)
232 KOG1651 Glutathione peroxidase 95.3 0.16 3.5E-06 35.8 7.5 92 75-166 31-170 (171)
233 KOG2507 Ubiquitin regulatory p 95.2 0.24 5.3E-06 40.0 9.3 89 76-165 16-111 (506)
234 PF13417 GST_N_3: Glutathione 95.1 0.35 7.6E-06 29.1 8.0 71 84-166 1-72 (75)
235 PRK09301 circadian clock prote 95.0 0.15 3.2E-06 33.1 6.3 75 78-153 5-80 (103)
236 KOG0855 Alkyl hydroperoxide re 94.9 0.22 4.8E-06 35.2 7.4 91 53-148 65-191 (211)
237 TIGR02654 circ_KaiB circadian 94.9 0.18 3.9E-06 31.7 6.3 75 79-154 3-78 (87)
238 cd03036 ArsC_like Arsenate Red 94.9 0.022 4.9E-07 37.5 2.4 55 83-143 2-61 (111)
239 TIGR02742 TrbC_Ftype type-F co 94.8 0.11 2.4E-06 35.3 5.6 42 121-162 60-112 (130)
240 cd00570 GST_N_family Glutathio 94.5 0.24 5.2E-06 28.4 6.2 57 83-145 2-60 (71)
241 cd03074 PDI_b'_Calsequestrin_C 94.5 0.81 1.8E-05 30.0 10.7 88 78-165 20-120 (120)
242 PF13778 DUF4174: Domain of un 94.4 0.82 1.8E-05 30.5 9.0 77 88-164 20-111 (118)
243 COG3531 Predicted protein-disu 94.4 0.097 2.1E-06 38.0 4.7 45 122-166 164-210 (212)
244 KOG2792 Putative cytochrome C 94.3 0.38 8.3E-06 36.4 7.9 90 77-166 138-276 (280)
245 cd03045 GST_N_Delta_Epsilon GS 94.3 0.34 7.4E-06 28.8 6.6 56 83-144 2-61 (74)
246 PF09673 TrbC_Ftype: Type-F co 94.0 0.42 9.2E-06 31.6 7.0 22 120-141 59-80 (113)
247 PF06764 DUF1223: Protein of u 94.0 1.1 2.4E-05 32.9 9.6 79 81-166 1-99 (202)
248 cd02977 ArsC_family Arsenate R 94.0 0.068 1.5E-06 34.7 3.1 75 83-163 2-85 (105)
249 cd03059 GST_N_SspA GST_N famil 93.9 0.36 7.9E-06 28.6 6.1 69 83-163 2-71 (73)
250 cd03055 GST_N_Omega GST_N fami 93.9 0.41 9E-06 29.9 6.5 59 82-145 19-78 (89)
251 PHA03075 glutaredoxin-like pro 93.8 0.13 2.8E-06 34.0 4.0 30 79-108 2-31 (123)
252 cd03024 DsbA_FrnE DsbA family, 93.6 0.084 1.8E-06 38.1 3.3 37 122-162 165-201 (201)
253 TIGR01617 arsC_related transcr 93.6 0.15 3.2E-06 33.9 4.2 34 83-122 2-35 (117)
254 COG0450 AhpC Peroxiredoxin [Po 93.5 0.61 1.3E-05 33.8 7.4 87 78-164 33-160 (194)
255 cd03068 PDI_b_ERp72 PDIb famil 93.0 1.6 3.5E-05 28.4 10.4 91 66-163 7-106 (107)
256 cd03051 GST_N_GTT2_like GST_N 92.7 0.65 1.4E-05 27.3 5.9 57 83-144 2-62 (74)
257 PRK01655 spxA transcriptional 92.5 0.23 5E-06 33.8 4.0 33 82-120 2-34 (131)
258 COG4545 Glutaredoxin-related p 92.3 0.26 5.5E-06 30.0 3.4 58 83-145 5-76 (85)
259 PF04134 DUF393: Protein of un 91.9 0.24 5.1E-06 32.5 3.4 58 84-143 1-61 (114)
260 cd03022 DsbA_HCCA_Iso DsbA fam 91.9 0.22 4.9E-06 35.5 3.5 34 123-161 158-191 (192)
261 PF07689 KaiB: KaiB domain; I 91.6 0.07 1.5E-06 33.3 0.6 55 84-138 2-57 (82)
262 cd03035 ArsC_Yffb Arsenate Red 91.1 0.21 4.5E-06 32.6 2.5 33 83-121 2-34 (105)
263 PRK00366 ispG 4-hydroxy-3-meth 90.6 0.38 8.3E-06 38.1 3.9 79 88-166 272-358 (360)
264 PF04592 SelP_N: Selenoprotein 90.4 2.6 5.5E-05 31.6 7.8 47 73-119 21-71 (238)
265 PF06053 DUF929: Domain of unk 90.0 1.6 3.5E-05 33.1 6.6 57 76-140 56-113 (249)
266 PF09822 ABC_transp_aux: ABC-t 90.0 7 0.00015 29.7 12.2 62 73-134 19-90 (271)
267 cd03032 ArsC_Spx Arsenate Redu 89.8 0.85 1.8E-05 30.1 4.6 34 82-121 2-35 (115)
268 cd03025 DsbA_FrnE_like DsbA fa 89.3 0.6 1.3E-05 33.3 3.8 28 82-109 3-30 (193)
269 COG3011 Predicted thiol-disulf 88.5 2.6 5.7E-05 28.9 6.2 66 78-145 6-73 (137)
270 PF06953 ArsD: Arsenical resis 88.3 4.1 8.9E-05 27.4 7.0 67 96-165 22-102 (123)
271 cd03056 GST_N_4 GST_N family, 88.2 2.3 5E-05 24.9 5.4 57 83-145 2-62 (73)
272 COG0278 Glutaredoxin-related p 87.9 2.1 4.5E-05 27.7 5.1 54 87-145 27-82 (105)
273 PRK12559 transcriptional regul 87.5 0.68 1.5E-05 31.5 3.0 21 82-102 2-22 (131)
274 PRK13730 conjugal transfer pil 87.3 1.6 3.5E-05 31.9 4.9 40 121-161 151-190 (212)
275 PF00255 GSHPx: Glutathione pe 86.8 2.6 5.6E-05 27.7 5.3 44 76-120 19-63 (108)
276 COG0821 gcpE 1-hydroxy-2-methy 85.9 1 2.2E-05 35.5 3.4 79 89-167 263-353 (361)
277 cd03052 GST_N_GDAP1 GST_N fami 85.5 4 8.6E-05 24.4 5.4 57 83-145 2-62 (73)
278 PF06491 Disulph_isomer: Disul 83.6 8.7 0.00019 26.1 6.6 100 65-166 22-133 (136)
279 PRK13344 spxA transcriptional 83.3 1.4 3E-05 30.0 2.9 21 82-102 2-22 (132)
280 cd03053 GST_N_Phi GST_N family 83.1 7.4 0.00016 23.0 7.1 58 82-145 2-63 (76)
281 cd03025 DsbA_FrnE_like DsbA fa 82.9 1.7 3.7E-05 30.9 3.4 21 123-143 160-180 (193)
282 PF05988 DUF899: Bacterial pro 82.6 14 0.00031 27.3 8.0 81 69-149 59-173 (211)
283 cd03058 GST_N_Tau GST_N family 81.1 8.9 0.00019 22.6 6.6 69 83-163 2-72 (74)
284 COG5494 Predicted thioredoxin/ 80.8 14 0.0003 27.4 7.3 74 82-163 13-86 (265)
285 PF04551 GcpE: GcpE protein; 80.8 1.5 3.2E-05 34.9 2.6 76 89-164 270-358 (359)
286 cd03033 ArsC_15kD Arsenate Red 80.7 2.2 4.7E-05 28.2 3.0 21 82-102 2-22 (113)
287 cd03021 DsbA_GSTK DsbA family, 80.3 3.3 7.1E-05 30.2 4.2 38 123-161 170-208 (209)
288 cd03061 GST_N_CLIC GST_N famil 79.9 13 0.00028 23.6 7.7 66 88-165 20-86 (91)
289 COG5309 Exo-beta-1,3-glucanase 79.5 4.8 0.0001 30.9 4.8 80 78-164 74-161 (305)
290 PF09695 YtfJ_HI0045: Bacteria 77.8 22 0.00047 25.1 9.1 87 77-163 36-156 (160)
291 PF08806 Sep15_SelM: Sep15/Sel 77.4 4.2 9.1E-05 25.0 3.3 34 132-165 41-76 (78)
292 COG5429 Uncharacterized secret 77.2 14 0.0003 27.8 6.5 82 79-165 42-141 (261)
293 KOG1364 Predicted ubiquitin re 77.1 4.9 0.00011 31.9 4.3 56 111-166 133-190 (356)
294 PRK09481 sspA stringent starva 76.6 15 0.00033 26.6 6.8 62 78-145 7-69 (211)
295 KOG0912 Thiol-disulfide isomer 74.3 27 0.00058 27.6 7.6 97 62-167 212-321 (375)
296 TIGR02182 GRXB Glutaredoxin, G 74.0 15 0.00032 26.7 6.1 56 84-144 2-57 (209)
297 KOG3029 Glutathione S-transfer 73.4 23 0.00051 27.5 7.0 73 80-166 89-162 (370)
298 COG3411 Ferredoxin [Energy pro 73.3 10 0.00022 22.3 4.0 30 133-166 17-46 (64)
299 cd03030 GRX_SH3BGR Glutaredoxi 72.9 21 0.00046 22.6 7.1 55 89-145 8-71 (92)
300 cd03054 GST_N_Metaxin GST_N fa 72.0 17 0.00037 21.2 6.4 46 88-145 14-59 (72)
301 PF05176 ATP-synt_10: ATP10 pr 71.7 42 0.00091 25.5 8.2 40 123-162 205-247 (252)
302 PRK10387 glutaredoxin 2; Provi 71.7 19 0.00042 25.8 6.3 56 84-144 3-58 (210)
303 KOG1422 Intracellular Cl- chan 70.4 38 0.00082 25.1 7.3 66 89-166 20-86 (221)
304 PF05673 DUF815: Protein of un 69.5 43 0.00092 25.5 7.7 89 71-165 44-135 (249)
305 cd03034 ArsC_ArsC Arsenate Red 68.7 5.2 0.00011 26.2 2.5 20 83-102 2-21 (112)
306 TIGR00014 arsC arsenate reduct 68.2 5.4 0.00012 26.3 2.5 32 83-120 2-33 (114)
307 COG1393 ArsC Arsenate reductas 67.6 6.9 0.00015 26.0 2.9 22 82-103 3-24 (117)
308 cd03038 GST_N_etherase_LigE GS 64.7 20 0.00044 21.6 4.5 67 87-164 13-82 (84)
309 PF01216 Calsequestrin: Calseq 63.2 78 0.0017 25.5 10.8 91 78-168 268-371 (383)
310 cd03022 DsbA_HCCA_Iso DsbA fam 63.1 16 0.00035 25.8 4.4 33 84-116 3-35 (192)
311 TIGR00612 ispG_gcpE 1-hydroxy- 62.7 9.9 0.00021 30.2 3.3 68 80-149 257-333 (346)
312 COG2077 Tpx Peroxiredoxin [Pos 62.6 18 0.0004 25.3 4.2 41 78-119 45-85 (158)
313 TIGR01616 nitro_assoc nitrogen 61.9 12 0.00025 25.3 3.2 23 81-103 2-24 (126)
314 cd03049 GST_N_3 GST_N family, 61.6 30 0.00064 20.1 5.2 60 83-145 2-62 (73)
315 PF10865 DUF2703: Domain of un 61.4 22 0.00048 23.8 4.4 53 88-145 13-72 (120)
316 PRK10853 putative reductase; P 60.4 10 0.00022 25.2 2.7 21 82-102 2-22 (118)
317 TIGR03759 conj_TIGR03759 integ 59.6 54 0.0012 24.1 6.3 37 78-118 108-144 (200)
318 KOG0854 Alkyl hydroperoxide re 59.5 38 0.00083 24.5 5.4 49 69-120 25-76 (224)
319 PF07511 DUF1525: Protein of u 59.0 27 0.00059 23.2 4.4 34 125-162 76-109 (114)
320 PF12617 LdpA_C: Iron-Sulfur b 58.2 37 0.0008 24.5 5.3 74 92-166 19-98 (183)
321 KOG2244 Highly conserved prote 58.1 19 0.00041 30.7 4.3 73 66-139 101-184 (786)
322 cd03050 GST_N_Theta GST_N fami 57.3 37 0.00081 19.9 7.0 57 83-145 2-62 (76)
323 TIGR03757 conj_TIGR03757 integ 57.1 34 0.00073 22.7 4.6 33 125-161 77-109 (113)
324 cd03044 GST_N_EF1Bgamma GST_N 56.9 38 0.00083 19.9 6.5 57 84-145 3-62 (75)
325 PRK10026 arsenate reductase; P 56.9 14 0.00031 25.4 3.0 22 82-103 4-25 (141)
326 cd03062 TRX_Fd_Sucrase TRX-lik 53.9 29 0.00063 22.1 3.9 65 88-167 14-85 (97)
327 PF00352 TBP: Transcription fa 52.4 24 0.00052 21.8 3.3 32 133-166 49-80 (86)
328 PLN02817 glutathione dehydroge 47.7 79 0.0017 24.1 6.1 47 88-138 71-118 (265)
329 PRK15113 glutathione S-transfe 47.5 1.1E+02 0.0023 22.2 8.1 61 79-145 3-69 (214)
330 TIGR02743 TraW type-F conjugat 46.8 61 0.0013 23.9 5.0 27 118-145 171-197 (202)
331 PLN02333 glucose-6-phosphate 1 46.7 83 0.0018 27.2 6.4 42 78-119 116-159 (604)
332 PF11287 DUF3088: Protein of u 45.9 42 0.0009 22.2 3.6 50 90-140 24-76 (112)
333 PF07293 DUF1450: Protein of u 45.4 72 0.0016 19.6 4.9 59 97-168 17-75 (78)
334 PF02702 KdpD: Osmosensitive K 44.4 1.3E+02 0.0028 22.3 6.9 68 77-145 3-71 (211)
335 PF03960 ArsC: ArsC family; I 44.0 22 0.00047 23.0 2.2 71 85-163 1-82 (110)
336 PF10262 Rdx: Rdx family; Int 43.8 71 0.0015 19.1 6.6 70 82-163 3-75 (76)
337 KOG0868 Glutathione S-transfer 43.3 19 0.0004 26.1 1.9 60 78-146 4-69 (217)
338 COG2326 Uncharacterized conser 43.1 1.5E+02 0.0033 22.8 6.9 92 70-164 64-166 (270)
339 TIGR03107 glu_aminopep glutamy 42.5 1.8E+02 0.0038 23.3 7.6 82 79-161 250-331 (350)
340 KOG0852 Alkyl hydroperoxide re 42.4 1.3E+02 0.0028 21.8 7.5 45 119-163 104-159 (196)
341 cd07973 Spt4 Transcription elo 42.4 35 0.00075 22.0 2.8 51 85-138 18-76 (98)
342 cd03042 GST_N_Zeta GST_N famil 42.3 66 0.0014 18.4 5.3 56 84-145 3-62 (73)
343 COG4752 Uncharacterized protei 41.7 35 0.00076 23.9 2.9 28 64-91 119-146 (190)
344 cd03071 PDI_b'_NRX PDIb' famil 41.6 1E+02 0.0022 20.3 8.6 90 77-166 13-116 (116)
345 TIGR00862 O-ClC intracellular 40.7 1.6E+02 0.0034 22.2 8.0 65 88-164 17-82 (236)
346 PLN02378 glutathione S-transfe 40.5 1E+02 0.0022 22.3 5.5 51 88-144 18-69 (213)
347 cd03021 DsbA_GSTK DsbA family, 39.8 81 0.0018 22.8 4.9 36 81-116 2-37 (209)
348 KOG0095 GTPase Rab30, small G 39.8 54 0.0012 23.1 3.6 41 69-109 68-110 (213)
349 cd03024 DsbA_FrnE DsbA family, 39.2 50 0.0011 23.5 3.7 25 84-108 3-27 (201)
350 PF09936 Methyltrn_RNA_4: SAM- 38.9 34 0.00074 24.7 2.6 25 65-89 119-143 (185)
351 TIGR00216 ispH_lytB (E)-4-hydr 38.7 72 0.0016 24.7 4.6 102 62-166 161-278 (280)
352 KOG0070 GTP-binding ADP-ribosy 38.7 1.2E+02 0.0026 21.9 5.3 71 85-161 63-143 (181)
353 cd03076 GST_N_Pi GST_N family, 38.5 82 0.0018 18.3 4.2 57 83-145 3-60 (73)
354 PF13409 GST_N_2: Glutathione 37.4 85 0.0018 18.2 6.2 65 89-163 1-69 (70)
355 PF00708 Acylphosphatase: Acyl 37.4 63 0.0014 20.1 3.5 40 122-165 24-63 (91)
356 PF07700 HNOB: Heme NO binding 36.9 1.1E+02 0.0023 21.5 5.0 42 78-119 127-169 (171)
357 COG2999 GrxB Glutaredoxin 2 [P 36.5 54 0.0012 23.8 3.3 53 86-143 5-57 (215)
358 PRK13738 conjugal transfer pil 36.5 60 0.0013 24.0 3.7 28 118-145 169-197 (209)
359 PF05116 S6PP: Sucrose-6F-phos 36.3 93 0.002 23.3 4.9 72 91-163 15-90 (247)
360 COG0295 Cdd Cytidine deaminase 35.6 74 0.0016 21.8 3.8 8 90-97 88-95 (134)
361 KOG4079 Putative mitochondrial 35.5 32 0.00069 23.6 1.9 33 134-166 75-108 (169)
362 cd06538 CIDE_N_FSP27 CIDE_N do 34.9 68 0.0015 19.8 3.2 24 123-146 29-52 (79)
363 KOG0324 Uncharacterized conser 34.5 35 0.00076 25.2 2.2 54 83-137 78-133 (214)
364 PHA03308 transcriptional regul 34.1 26 0.00056 31.0 1.6 26 84-109 1346-1371(1463)
365 TIGR02652 conserved hypothetic 33.8 16 0.00034 25.2 0.3 12 89-100 11-22 (163)
366 PF09654 DUF2396: Protein of u 33.8 16 0.00034 25.1 0.3 12 89-100 8-19 (161)
367 cd06537 CIDE_N_B CIDE_N domain 33.6 70 0.0015 19.8 3.1 24 123-146 29-52 (81)
368 PF11238 DUF3039: Protein of u 33.0 35 0.00075 19.7 1.6 24 77-100 23-57 (58)
369 COG4952 Predicted sugar isomer 32.9 16 0.00035 28.5 0.3 49 114-163 35-83 (430)
370 PRK13669 hypothetical protein; 32.9 1.2E+02 0.0026 18.7 5.1 55 100-167 20-74 (78)
371 COG3531 Predicted protein-disu 32.2 66 0.0014 23.7 3.2 29 80-108 2-30 (212)
372 cd03039 GST_N_Sigma_like GST_N 32.2 67 0.0015 18.5 2.9 56 84-145 3-60 (72)
373 COG4312 Uncharacterized protei 32.1 2E+02 0.0044 21.7 5.7 51 68-118 64-120 (247)
374 TIGR03439 methyl_EasF probable 31.7 89 0.0019 24.7 4.2 82 79-164 77-182 (319)
375 COG1651 DsbG Protein-disulfide 31.7 34 0.00074 25.3 1.9 27 78-104 84-110 (244)
376 PRK01045 ispH 4-hydroxy-3-meth 31.6 1.1E+02 0.0024 23.9 4.7 100 63-165 164-279 (298)
377 KOG1420 Ca2+-activated K+ chan 31.3 35 0.00076 29.4 1.9 19 80-98 140-161 (1103)
378 cd00307 RuBisCO_small_like Rib 31.1 66 0.0014 20.1 2.7 30 90-119 36-71 (84)
379 PF03227 GILT: Gamma interfero 31.1 1.5E+02 0.0032 19.1 4.7 21 82-102 3-24 (108)
380 COG4604 CeuD ABC-type enteroch 30.7 1.8E+02 0.0039 21.9 5.2 51 89-147 167-217 (252)
381 PF04007 DUF354: Protein of un 30.2 2.7E+02 0.0058 22.2 6.6 34 76-109 177-210 (335)
382 KOG0436 Methionyl-tRNA synthet 30.0 77 0.0017 26.3 3.6 46 118-166 352-397 (578)
383 COG4837 Uncharacterized protei 29.6 1.6E+02 0.0034 18.9 7.9 80 81-164 6-102 (106)
384 PF09499 RE_ApaLI: ApaLI-like 29.2 1.8E+02 0.004 21.0 4.9 41 69-109 133-174 (191)
385 PLN00062 TATA-box-binding prot 29.1 1.1E+02 0.0023 22.1 3.9 30 135-166 140-169 (179)
386 PF02484 Rhabdo_NV: Rhabdoviru 29.1 53 0.0011 20.8 2.0 38 127-164 18-55 (111)
387 KOG1731 FAD-dependent sulfhydr 28.9 95 0.002 26.7 4.0 56 111-167 216-271 (606)
388 PRK00394 transcription factor; 28.8 1.1E+02 0.0024 21.9 4.0 30 135-166 141-170 (179)
389 cd04516 TBP_eukaryotes eukaryo 28.4 1.1E+02 0.0024 21.8 3.9 30 135-166 140-169 (174)
390 cd04518 TBP_archaea archaeal T 28.1 1.2E+02 0.0025 21.7 4.0 30 135-166 140-169 (174)
391 cd00652 TBP_TLF TATA box bindi 27.9 1.1E+02 0.0025 21.7 3.9 30 135-166 141-170 (174)
392 PF07315 DUF1462: Protein of u 27.8 1.7E+02 0.0036 18.6 9.1 74 85-162 3-93 (93)
393 PF02591 DUF164: Putative zinc 27.4 1.2E+02 0.0026 16.9 4.2 38 68-105 3-42 (56)
394 PRK10696 tRNA 2-thiocytidine b 27.2 2.7E+02 0.006 20.9 6.4 76 88-163 110-192 (258)
395 PF11317 DUF3119: Protein of u 26.8 1.5E+02 0.0031 19.8 3.9 35 131-165 81-115 (116)
396 COG5270 PUA domain (predicted 26.8 25 0.00053 25.5 0.3 37 78-116 5-41 (202)
397 COG3054 Predicted transcriptio 26.7 2.4E+02 0.0051 20.0 5.8 37 127-163 140-178 (184)
398 cd06539 CIDE_N_A CIDE_N domain 26.4 1.2E+02 0.0025 18.8 3.1 24 123-146 29-53 (78)
399 PF14307 Glyco_tran_WbsX: Glyc 26.4 1.5E+02 0.0032 23.6 4.6 41 77-117 157-198 (345)
400 COG5575 ORC2 Origin recognitio 25.8 2.3E+02 0.005 23.3 5.5 65 92-165 242-307 (535)
401 PRK09864 putative peptidase; P 25.7 3.6E+02 0.0077 21.7 7.7 83 78-161 249-331 (356)
402 PF04908 SH3BGR: SH3-binding, 25.3 1.9E+02 0.0042 18.5 6.0 40 84-123 4-44 (99)
403 COG2101 SPT15 TATA-box binding 25.1 1.5E+02 0.0032 21.4 3.9 30 135-166 55-84 (185)
404 cd03048 GST_N_Ure2p_like GST_N 24.9 1.6E+02 0.0034 17.3 5.0 69 84-164 4-78 (81)
405 PF02401 LYTB: LytB protein; 24.5 24 0.00053 27.3 -0.0 99 63-166 163-279 (281)
406 COG4956 Integral membrane prot 24.0 1.1E+02 0.0024 24.3 3.3 19 135-153 298-316 (356)
407 KOG3286 Selenoprotein T [Gener 23.9 3.1E+02 0.0066 20.4 5.8 80 80-160 70-152 (226)
408 KOG4277 Uncharacterized conser 23.9 3.8E+02 0.0081 21.4 7.6 80 73-162 148-228 (468)
409 TIGR01753 flav_short flavodoxi 23.9 1.5E+02 0.0033 19.4 3.9 22 85-106 4-25 (140)
410 PRK14451 acylphosphatase; Prov 23.3 1.4E+02 0.0031 18.6 3.3 38 123-165 24-62 (89)
411 COG4221 Short-chain alcohol de 23.3 3.4E+02 0.0074 20.7 6.3 65 97-165 40-113 (246)
412 PRK14449 acylphosphatase; Prov 23.2 2E+02 0.0043 17.9 4.3 39 123-165 24-62 (90)
413 PRK04011 peptide chain release 22.9 89 0.0019 25.6 2.9 29 101-129 373-401 (411)
414 TIGR00597 rad10 DNA repair pro 22.8 1.1E+02 0.0024 20.2 2.8 29 99-127 58-86 (112)
415 TIGR00762 DegV EDD domain prot 22.7 1.4E+02 0.003 22.8 3.8 43 118-162 9-51 (275)
416 KOG3360 Acylphosphatase [Energ 22.5 1.9E+02 0.0042 18.6 3.7 39 122-162 28-67 (98)
417 PRK11752 putative S-transferas 22.5 3E+02 0.0065 20.8 5.6 56 82-138 45-106 (264)
418 PF14237 DUF4339: Domain of un 22.5 1.4E+02 0.003 15.8 3.3 23 138-164 4-26 (45)
419 PLN02473 glutathione S-transfe 22.4 3E+02 0.0064 19.6 7.4 59 81-145 2-64 (214)
420 PRK12360 4-hydroxy-3-methylbut 22.2 2.2E+02 0.0048 22.1 4.8 100 63-166 165-279 (281)
421 COG2957 Peptidylarginine deimi 22.1 4.1E+02 0.0089 21.2 7.9 73 93-167 244-318 (346)
422 TIGR01764 excise DNA binding d 22.0 21 0.00046 18.7 -0.6 11 152-162 38-48 (49)
423 TIGR01287 nifH nitrogenase iro 21.8 43 0.00092 25.4 0.8 51 78-131 221-271 (275)
424 PRK14430 acylphosphatase; Prov 21.4 1.9E+02 0.0041 18.2 3.6 39 122-164 24-62 (92)
425 PRK14420 acylphosphatase; Prov 21.3 2.2E+02 0.0047 17.7 4.1 39 123-165 23-61 (91)
426 cd04517 TLF TBP-like factors ( 21.3 1.8E+02 0.004 20.7 3.9 30 135-166 141-170 (174)
427 PF02042 RWP-RK: RWP-RK domain 21.1 79 0.0017 17.8 1.6 15 121-135 32-46 (52)
428 PF02645 DegV: Uncharacterised 21.0 1.3E+02 0.0029 22.9 3.4 42 119-163 11-53 (280)
429 PF00025 Arf: ADP-ribosylation 20.8 2E+02 0.0044 20.0 4.1 72 82-161 59-140 (175)
430 PF06999 Suc_Fer-like: Sucrase 20.8 1.8E+02 0.0038 21.4 3.9 41 127-167 177-219 (230)
431 PF06122 TraH: Conjugative rel 20.7 75 0.0016 25.5 2.0 52 58-109 61-116 (361)
432 COG1579 Zn-ribbon protein, pos 20.5 93 0.002 23.6 2.3 37 69-105 179-217 (239)
433 PF07351 DUF1480: Protein of u 20.5 1.1E+02 0.0023 18.8 2.1 37 111-150 26-66 (80)
434 PF14639 YqgF: Holliday-juncti 20.1 2.7E+02 0.0059 19.3 4.5 39 68-108 53-91 (150)
435 PF11072 DUF2859: Protein of u 20.0 1.8E+02 0.0039 20.2 3.5 17 122-138 121-137 (142)
No 1
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.6e-29 Score=172.15 Aligned_cols=108 Identities=43% Similarity=0.757 Sum_probs=102.7
Q ss_pred ceecccCChhhHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEE
Q 030928 59 VVEAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFIL 138 (169)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~ 138 (169)
...+...+..+|++.+.+++.||+|+|||+||++|+.+.|.++++..+|.+++.|+.||.|++.+++.+|+|..+||+++
T Consensus 42 ~~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlv 121 (150)
T KOG0910|consen 42 ATLFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLV 121 (150)
T ss_pred cccccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEE
Confidence 34566778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCceeeeeeCCCCHHHHHHHHHhhhc
Q 030928 139 FKDGKPSDRFEGAFSKDQLIQRIENSLS 166 (169)
Q Consensus 139 ~~~g~~~~~~~G~~~~~~l~~~i~~~l~ 166 (169)
|+||++..++.|..+.+.++++|++.++
T Consensus 122 fknGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 122 FKNGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred EECCEEeeeecccCCHHHHHHHHHHHhc
Confidence 9999999999999999999999999875
No 2
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.93 E-value=1.9e-25 Score=149.74 Aligned_cols=104 Identities=17% Similarity=0.276 Sum_probs=96.1
Q ss_pred ecccCChhhHHHHHhcCCCcEEEEEEcCCChh--hh--hhhHHHHHHHHHh--cCCeEEEEEeCCCchhHHHhCCCCCCc
Q 030928 61 EAKKQTFSSLDDLLQKSDKPVLVDFYATWCGP--CQ--YMAPILNEVGAAL--KDKIQVVKIDTEKYPQIADTYRIEALP 134 (169)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~vvv~f~~~~C~~--C~--~~~~~l~~~~~~~--~~~v~~~~v~~d~~~~l~~~~~v~~~P 134 (169)
.+..++.++|++.+.+++.++|++||++||++ |+ ++.|.+++++.++ .+++.|+.||+|++++++++|||+++|
T Consensus 10 ~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~iP 89 (120)
T cd03065 10 RVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDEED 89 (120)
T ss_pred ceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCcccc
Confidence 34556789999999888899999999999987 99 8899999999998 778999999999999999999999999
Q ss_pred EEEEEcCCceeeeeeCCCCHHHHHHHHHhhh
Q 030928 135 TFILFKDGKPSDRFEGAFSKDQLIQRIENSL 165 (169)
Q Consensus 135 t~~~~~~g~~~~~~~G~~~~~~l~~~i~~~l 165 (169)
|+++|++|+++. +.|..+.+.+.++|++++
T Consensus 90 Tl~lfk~G~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 90 SIYVFKDDEVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred EEEEEECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence 999999999887 999999999999999876
No 3
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.93 E-value=2.3e-25 Score=148.32 Aligned_cols=100 Identities=16% Similarity=0.178 Sum_probs=90.5
Q ss_pred ecccCChhhHHHHH--hcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHH-HhCCCCCCcEEE
Q 030928 61 EAKKQTFSSLDDLL--QKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA-DTYRIEALPTFI 137 (169)
Q Consensus 61 ~~~~~~~~~~~~~~--~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~-~~~~v~~~Pt~~ 137 (169)
.+.+++.++|++.+ .+.+++++|.||++||++|+.++|.++++++++++.+.|+.||++++.+++ ++|+|.++||++
T Consensus 10 ~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PTl~ 89 (113)
T cd03006 10 PVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPVIH 89 (113)
T ss_pred CeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCEEE
Confidence 35567778888763 356889999999999999999999999999999988999999999999999 589999999999
Q ss_pred EEcCCceeeeeeCCCCHHHHHHH
Q 030928 138 LFKDGKPSDRFEGAFSKDQLIQR 160 (169)
Q Consensus 138 ~~~~g~~~~~~~G~~~~~~l~~~ 160 (169)
+|++|+...++.|..+.+.|..|
T Consensus 90 lf~~g~~~~~y~G~~~~~~i~~~ 112 (113)
T cd03006 90 LYYRSRGPIEYKGPMRAPYMEKF 112 (113)
T ss_pred EEECCccceEEeCCCCHHHHHhh
Confidence 99999988999999999999876
No 4
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.93 E-value=7.9e-25 Score=143.23 Aligned_cols=101 Identities=35% Similarity=0.753 Sum_probs=95.7
Q ss_pred cCChhhHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEcCCc
Q 030928 64 KQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGK 143 (169)
Q Consensus 64 ~~~~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g~ 143 (169)
.++.++|++.+...+++++|+||++||++|+.+.|.|+++++++.+++.|+.||++++++++++|+|.++||+++|++|+
T Consensus 3 ~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~ 82 (103)
T PF00085_consen 3 VLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKNGK 82 (103)
T ss_dssp EESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEETTE
T ss_pred ECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEECCc
Confidence 46778999999776899999999999999999999999999999978999999999999999999999999999999999
Q ss_pred eeeeeeCCCCHHHHHHHHHhh
Q 030928 144 PSDRFEGAFSKDQLIQRIENS 164 (169)
Q Consensus 144 ~~~~~~G~~~~~~l~~~i~~~ 164 (169)
...++.|..+.+.|.++|+++
T Consensus 83 ~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 83 EVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp EEEEEESSSSHHHHHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHHcC
Confidence 999999999999999999874
No 5
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.93 E-value=1.7e-25 Score=148.05 Aligned_cols=99 Identities=20% Similarity=0.334 Sum_probs=86.3
Q ss_pred hhhHHHHHhc-CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEcCCcee
Q 030928 67 FSSLDDLLQK-SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPS 145 (169)
Q Consensus 67 ~~~~~~~~~~-~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g~~~ 145 (169)
.++|++.+.. .++++||+|||+||++|+.+.|.+++++.++++.+.|+.||+|++++++++|+|.++||+++|++|+.+
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~v 81 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKHM 81 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEE
Confidence 3567777763 578999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred eeeeCCCC----------HHHHHHHHHhhh
Q 030928 146 DRFEGAFS----------KDQLIQRIENSL 165 (169)
Q Consensus 146 ~~~~G~~~----------~~~l~~~i~~~l 165 (169)
.+..|..+ .+++.+.+..+-
T Consensus 82 ~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (114)
T cd02954 82 KIDLGTGNNNKINWVFEDKQEFIDIIETIY 111 (114)
T ss_pred EEEcCCCCCceEEEecCcHHHHHHHHHHHh
Confidence 99988654 455666655443
No 6
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.93 E-value=3.6e-25 Score=145.67 Aligned_cols=100 Identities=33% Similarity=0.627 Sum_probs=91.5
Q ss_pred cccCChhhHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEcC
Q 030928 62 AKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKD 141 (169)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~ 141 (169)
+.+++.++|++.+.+.+++++|.||++||++|+.+.|.++++++++.+.+.|+.||++++++++++|+|+++||+++|++
T Consensus 3 v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~ 82 (104)
T cd03004 3 VITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRLYPG 82 (104)
T ss_pred ceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEEEcC
Confidence 34567889999887778899999999999999999999999999998889999999999999999999999999999987
Q ss_pred C-ceeeeeeCCCC-HHHHHHHH
Q 030928 142 G-KPSDRFEGAFS-KDQLIQRI 161 (169)
Q Consensus 142 g-~~~~~~~G~~~-~~~l~~~i 161 (169)
| +.+.++.|..+ .+++.+||
T Consensus 83 g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 83 NASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred CCCCceEccCCCCCHHHHHhhC
Confidence 7 88999999987 99888875
No 7
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.93 E-value=5.8e-25 Score=144.01 Aligned_cols=98 Identities=18% Similarity=0.408 Sum_probs=90.3
Q ss_pred cccCChhhHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEcC
Q 030928 62 AKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKD 141 (169)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~ 141 (169)
+.+++.++|++.+. .+++++|.||++||++|+.+.|.++++++++++++.|+.||++++++++++|+|+++||+++|++
T Consensus 3 ~~~l~~~~f~~~v~-~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 81 (101)
T cd03003 3 IVTLDRGDFDAAVN-SGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVFPS 81 (101)
T ss_pred eEEcCHhhHHHHhc-CCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEEcC
Confidence 44567889998884 46899999999999999999999999999999889999999999999999999999999999999
Q ss_pred CceeeeeeCCCCHHHHHHH
Q 030928 142 GKPSDRFEGAFSKDQLIQR 160 (169)
Q Consensus 142 g~~~~~~~G~~~~~~l~~~ 160 (169)
|+.+.++.|..+.++|.+|
T Consensus 82 g~~~~~~~G~~~~~~l~~f 100 (101)
T cd03003 82 GMNPEKYYGDRSKESLVKF 100 (101)
T ss_pred CCCcccCCCCCCHHHHHhh
Confidence 9999999999999988876
No 8
>PHA02278 thioredoxin-like protein
Probab=99.92 E-value=1.4e-24 Score=142.26 Aligned_cols=94 Identities=18% Similarity=0.368 Sum_probs=83.8
Q ss_pred ChhhHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCc----hhHHHhCCCCCCcEEEEEcC
Q 030928 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKY----PQIADTYRIEALPTFILFKD 141 (169)
Q Consensus 66 ~~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~----~~l~~~~~v~~~Pt~~~~~~ 141 (169)
+.++|++.+ ..+++++|+|||+||++|+.+.|.++++++++..++.|+.||+|.+ ++++++|+|.++||+++|++
T Consensus 3 ~~~~~~~~i-~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~ 81 (103)
T PHA02278 3 SLVDLNTAI-RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKD 81 (103)
T ss_pred CHHHHHHHH-hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEEC
Confidence 356788887 4578999999999999999999999999988665678999999986 68999999999999999999
Q ss_pred CceeeeeeCCCCHHHHHHH
Q 030928 142 GKPSDRFEGAFSKDQLIQR 160 (169)
Q Consensus 142 g~~~~~~~G~~~~~~l~~~ 160 (169)
|+.+.++.|..+.+++.++
T Consensus 82 G~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 82 GQLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred CEEEEEEeCCCCHHHHHhh
Confidence 9999999999999887764
No 9
>PRK09381 trxA thioredoxin; Provisional
Probab=99.92 E-value=3.2e-24 Score=142.31 Aligned_cols=105 Identities=38% Similarity=0.718 Sum_probs=96.2
Q ss_pred cccCChhhHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEcC
Q 030928 62 AKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKD 141 (169)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~ 141 (169)
+..++.++|.+.+.+.+++++|+||++||++|+.+.|.++++++++.+++.++.+|++.++.++++|+|+++||+++|++
T Consensus 5 v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 84 (109)
T PRK09381 5 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKN 84 (109)
T ss_pred ceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEEEeC
Confidence 34556678887666668899999999999999999999999999998889999999999999999999999999999999
Q ss_pred CceeeeeeCCCCHHHHHHHHHhhhc
Q 030928 142 GKPSDRFEGAFSKDQLIQRIENSLS 166 (169)
Q Consensus 142 g~~~~~~~G~~~~~~l~~~i~~~l~ 166 (169)
|+++.++.|..+.+++.++|++.++
T Consensus 85 G~~~~~~~G~~~~~~l~~~i~~~~~ 109 (109)
T PRK09381 85 GEVAATKVGALSKGQLKEFLDANLA 109 (109)
T ss_pred CeEEEEecCCCCHHHHHHHHHHhcC
Confidence 9999999999999999999998874
No 10
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.2e-24 Score=162.79 Aligned_cols=108 Identities=35% Similarity=0.714 Sum_probs=99.7
Q ss_pred eecccCChhhHHHHHhc-C-CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEE
Q 030928 60 VEAKKQTFSSLDDLLQK-S-DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFI 137 (169)
Q Consensus 60 ~~~~~~~~~~~~~~~~~-~-~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~ 137 (169)
..+.++|..+|.+.+.. + .+||+|+||+|||++|+.+.|.|++++.+|+|++.+++||||+.+.++.+|||+++||++
T Consensus 23 ~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~ 102 (304)
T COG3118 23 PGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVY 102 (304)
T ss_pred ccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEE
Confidence 33778888999876643 3 569999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCceeeeeeCCCCHHHHHHHHHhhhcc
Q 030928 138 LFKDGKPSDRFEGAFSKDQLIQRIENSLSV 167 (169)
Q Consensus 138 ~~~~g~~~~~~~G~~~~~~l~~~i~~~l~~ 167 (169)
.|++|+.+..+.|..+.+.+++||++++..
T Consensus 103 af~dGqpVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 103 AFKDGQPVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred EeeCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence 999999999999999999999999998753
No 11
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.92 E-value=3.3e-24 Score=139.05 Aligned_cols=94 Identities=34% Similarity=0.666 Sum_probs=86.7
Q ss_pred hHHHHHhcC-CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEcCCceeee
Q 030928 69 SLDDLLQKS-DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSDR 147 (169)
Q Consensus 69 ~~~~~~~~~-~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~ 147 (169)
+|++.+.+. +++++|+||++||++|+.+.|.+++++..+.+.+.++.||++.+++++++|+|.++||+++|++|+.+.+
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~ 81 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPVDG 81 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEeee
Confidence 566666544 7899999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred eeCCCCHHHHHHHHH
Q 030928 148 FEGAFSKDQLIQRIE 162 (169)
Q Consensus 148 ~~G~~~~~~l~~~i~ 162 (169)
+.|..+.+++.++|+
T Consensus 82 ~~g~~~~~~l~~~l~ 96 (96)
T cd02956 82 FQGAQPEEQLRQMLD 96 (96)
T ss_pred ecCCCCHHHHHHHhC
Confidence 999999999998874
No 12
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.92 E-value=3.9e-24 Score=142.47 Aligned_cols=100 Identities=18% Similarity=0.418 Sum_probs=89.6
Q ss_pred CChhhHHHHHh--cCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCCchhHHHhCCCCCCcEEEEEcC
Q 030928 65 QTFSSLDDLLQ--KSDKPVLVDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEKYPQIADTYRIEALPTFILFKD 141 (169)
Q Consensus 65 ~~~~~~~~~~~--~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~ 141 (169)
++.++|.+.+. +.+++++|+||++||++|+.+.|.++++++++.+ ++.++.||++++++++++++|.++||+++|++
T Consensus 9 ~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~ 88 (111)
T cd02963 9 LTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGIIN 88 (111)
T ss_pred eeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEEC
Confidence 35567765443 3578999999999999999999999999999975 59999999999999999999999999999999
Q ss_pred CceeeeeeCCCCHHHHHHHHHhh
Q 030928 142 GKPSDRFEGAFSKDQLIQRIENS 164 (169)
Q Consensus 142 g~~~~~~~G~~~~~~l~~~i~~~ 164 (169)
|+.+.++.|..+.+++.++|+++
T Consensus 89 g~~~~~~~G~~~~~~l~~~i~~~ 111 (111)
T cd02963 89 GQVTFYHDSSFTKQHVVDFVRKL 111 (111)
T ss_pred CEEEEEecCCCCHHHHHHHHhcC
Confidence 99999999999999999999864
No 13
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.92 E-value=9.1e-24 Score=138.89 Aligned_cols=95 Identities=21% Similarity=0.439 Sum_probs=82.6
Q ss_pred ChhhHHHHHhcC-CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCch---hHHHhCCCCCCcEEEEEcC
Q 030928 66 TFSSLDDLLQKS-DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYP---QIADTYRIEALPTFILFKD 141 (169)
Q Consensus 66 ~~~~~~~~~~~~-~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~---~l~~~~~v~~~Pt~~~~~~ 141 (169)
+.++|++.+.+. +++++|+||++||++|+.++|.++++++++ +.+.|+.||+|++. +++++|+|+++||+++|++
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~ 80 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKD 80 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeC
Confidence 456788887654 889999999999999999999999999999 45999999999874 8999999999999999999
Q ss_pred CceeeeeeCCCCHHHHHHHHH
Q 030928 142 GKPSDRFEGAFSKDQLIQRIE 162 (169)
Q Consensus 142 g~~~~~~~G~~~~~~l~~~i~ 162 (169)
|+++.++.|.. .+++.+.+.
T Consensus 81 G~~v~~~~G~~-~~~l~~~~~ 100 (103)
T cd02985 81 GEKIHEEEGIG-PDELIGDVL 100 (103)
T ss_pred CeEEEEEeCCC-HHHHHHHHH
Confidence 99999999965 555665554
No 14
>PRK10996 thioredoxin 2; Provisional
Probab=99.91 E-value=3.8e-23 Score=142.86 Aligned_cols=101 Identities=39% Similarity=0.784 Sum_probs=93.6
Q ss_pred cCChhhHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEcCCc
Q 030928 64 KQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGK 143 (169)
Q Consensus 64 ~~~~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g~ 143 (169)
+.+.++|++.+. .+++++|+||++||++|+.+.|.++++++++.+++.|+.+|++++++++++|+|+++||+++|++|+
T Consensus 39 ~~~~~~~~~~i~-~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~~G~ 117 (139)
T PRK10996 39 NATGETLDKLLQ-DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMIFKNGQ 117 (139)
T ss_pred EcCHHHHHHHHh-CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEEEECCE
Confidence 456778888774 4789999999999999999999999999999888999999999999999999999999999999999
Q ss_pred eeeeeeCCCCHHHHHHHHHhhh
Q 030928 144 PSDRFEGAFSKDQLIQRIENSL 165 (169)
Q Consensus 144 ~~~~~~G~~~~~~l~~~i~~~l 165 (169)
++.++.|..+.++++++|++++
T Consensus 118 ~v~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 118 VVDMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred EEEEEcCCCCHHHHHHHHHHhC
Confidence 9999999999999999999864
No 15
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.91 E-value=2.1e-23 Score=138.22 Aligned_cols=99 Identities=37% Similarity=0.633 Sum_probs=87.1
Q ss_pred cccCChhhHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhc------CCeEEEEEeCCCchhHHHhCCCCCCcE
Q 030928 62 AKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALK------DKIQVVKIDTEKYPQIADTYRIEALPT 135 (169)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~------~~v~~~~v~~d~~~~l~~~~~v~~~Pt 135 (169)
+.+++.++|++.+ +.+++++|.||++||++|+++.|.|+++++++. +++.|+.||++++++++++|+|+++||
T Consensus 3 v~~l~~~~f~~~i-~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt 81 (108)
T cd02996 3 IVSLTSGNIDDIL-QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPT 81 (108)
T ss_pred eEEcCHhhHHHHH-hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCE
Confidence 3456788999887 457799999999999999999999999998753 248999999999999999999999999
Q ss_pred EEEEcCCce-eeeeeCCCCHHHHHHHH
Q 030928 136 FILFKDGKP-SDRFEGAFSKDQLIQRI 161 (169)
Q Consensus 136 ~~~~~~g~~-~~~~~G~~~~~~l~~~i 161 (169)
+++|++|++ ..++.|..+.++|.+||
T Consensus 82 l~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 82 LKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred EEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 999999984 57888999999998875
No 16
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.90 E-value=3e-23 Score=136.51 Aligned_cols=97 Identities=15% Similarity=0.243 Sum_probs=89.3
Q ss_pred cccCChhhHHHHHhcCCCcEEEEEEcCC--ChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEE
Q 030928 62 AKKQTFSSLDDLLQKSDKPVLVDFYATW--CGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILF 139 (169)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~vvv~f~~~~--C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~ 139 (169)
...++..+|++.+ ..+.+++|.||++| ||.|+.+.|.|+++++++++++.|+.||+|++++++.+|+|+++||+++|
T Consensus 12 ~~~~~~~~~~~~~-~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~f 90 (111)
T cd02965 12 WPRVDAATLDDWL-AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLFF 90 (111)
T ss_pred CcccccccHHHHH-hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEEE
Confidence 4456778899887 55779999999997 99999999999999999999899999999999999999999999999999
Q ss_pred cCCceeeeeeCCCCHHHHHH
Q 030928 140 KDGKPSDRFEGAFSKDQLIQ 159 (169)
Q Consensus 140 ~~g~~~~~~~G~~~~~~l~~ 159 (169)
++|+.+.++.|..+.+++.+
T Consensus 91 kdGk~v~~~~G~~~~~e~~~ 110 (111)
T cd02965 91 RDGRYVGVLAGIRDWDEYVA 110 (111)
T ss_pred ECCEEEEEEeCccCHHHHhh
Confidence 99999999999999988764
No 17
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.90 E-value=5e-23 Score=135.14 Aligned_cols=97 Identities=24% Similarity=0.530 Sum_probs=86.5
Q ss_pred CChhhHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCCchhHHHhCCCCCCcEEEEEcCCc
Q 030928 65 QTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEKYPQIADTYRIEALPTFILFKDGK 143 (169)
Q Consensus 65 ~~~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g~ 143 (169)
.+.++|.+++. .+++++|+||++||++|+.+.|.+++++.++++ .+.|+.+|.| +++++++|+|+++||+++|++|+
T Consensus 5 ~~~~~~~~~i~-~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g~ 82 (102)
T cd02948 5 NNQEEWEELLS-NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNGE 82 (102)
T ss_pred cCHHHHHHHHc-cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECCE
Confidence 35678888774 578999999999999999999999999999985 4789999999 77899999999999999999999
Q ss_pred eeeeeeCCCCHHHHHHHHHhh
Q 030928 144 PSDRFEGAFSKDQLIQRIENS 164 (169)
Q Consensus 144 ~~~~~~G~~~~~~l~~~i~~~ 164 (169)
.+.+..|. +.+.+.++|+++
T Consensus 83 ~~~~~~G~-~~~~~~~~i~~~ 102 (102)
T cd02948 83 LVAVIRGA-NAPLLNKTITEL 102 (102)
T ss_pred EEEEEecC-ChHHHHHHHhhC
Confidence 99999995 888899988763
No 18
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.90 E-value=2.9e-23 Score=137.51 Aligned_cols=100 Identities=23% Similarity=0.560 Sum_probs=90.7
Q ss_pred ccCChhhHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCC--chhHHHhCCCCCCcEEEEEc
Q 030928 63 KKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEK--YPQIADTYRIEALPTFILFK 140 (169)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~--~~~l~~~~~v~~~Pt~~~~~ 140 (169)
.+++.++|++.+.+.+++++|.||++||++|+.+.|.++++++++.+.+.++.+|+++ +++++++|+|.++||+++|+
T Consensus 3 ~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~~ 82 (109)
T cd03002 3 YELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVFR 82 (109)
T ss_pred EEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEEe
Confidence 4567788999988888899999999999999999999999999998889999999998 88999999999999999998
Q ss_pred CCc-----eeeeeeCCCCHHHHHHHHH
Q 030928 141 DGK-----PSDRFEGAFSKDQLIQRIE 162 (169)
Q Consensus 141 ~g~-----~~~~~~G~~~~~~l~~~i~ 162 (169)
+|+ ....+.|..+.+++.+||.
T Consensus 83 ~~~~~~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 83 PPKKASKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred CCCcccccccccccCccCHHHHHHHhC
Confidence 775 5678899999999999873
No 19
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.90 E-value=4.6e-23 Score=141.36 Aligned_cols=103 Identities=18% Similarity=0.323 Sum_probs=91.2
Q ss_pred CChhhHHHHHh-cCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEE-EEcCC
Q 030928 65 QTFSSLDDLLQ-KSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFI-LFKDG 142 (169)
Q Consensus 65 ~~~~~~~~~~~-~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~-~~~~g 142 (169)
.+..+|++.+. ..++++||+||++||++|+.+.|.|+++++++++.+.|+.||+|++++++.+|+|++.|+++ ||++|
T Consensus 9 ~s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~g 88 (142)
T PLN00410 9 HSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFFFRNK 88 (142)
T ss_pred CCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEEEECC
Confidence 35678888876 34789999999999999999999999999999988999999999999999999999887766 88999
Q ss_pred c-eeeeeeC--------CCCHHHHHHHHHhhhcc
Q 030928 143 K-PSDRFEG--------AFSKDQLIQRIENSLSV 167 (169)
Q Consensus 143 ~-~~~~~~G--------~~~~~~l~~~i~~~l~~ 167 (169)
+ .+.+..| ..+.+++.+.++.+++.
T Consensus 89 ~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~ 122 (142)
T PLN00410 89 HIMIDLGTGNNNKINWALKDKQEFIDIVETVYRG 122 (142)
T ss_pred eEEEEEecccccccccccCCHHHHHHHHHHHHHH
Confidence 9 8888889 67889999999888764
No 20
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.90 E-value=2.2e-23 Score=136.30 Aligned_cols=91 Identities=25% Similarity=0.487 Sum_probs=81.8
Q ss_pred hHHHHHh-cCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCC-CchhHHHhCCCCCCcEEEEEcCCceee
Q 030928 69 SLDDLLQ-KSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTE-KYPQIADTYRIEALPTFILFKDGKPSD 146 (169)
Q Consensus 69 ~~~~~~~-~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d-~~~~l~~~~~v~~~Pt~~~~~~g~~~~ 146 (169)
++.+++. .++++++|.||++||++|+.+.|.|+++++++++ +.++.||.+ ++++++++|+|.++||+++|++| .+.
T Consensus 8 ~~~~~~~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~-~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~~~ 85 (100)
T cd02999 8 IALDLMAFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ-IRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-PRV 85 (100)
T ss_pred HHHHHHHhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc-CceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-cee
Confidence 4444443 5689999999999999999999999999999975 889999998 78999999999999999999999 788
Q ss_pred eeeCCCCHHHHHHHH
Q 030928 147 RFEGAFSKDQLIQRI 161 (169)
Q Consensus 147 ~~~G~~~~~~l~~~i 161 (169)
++.|..+.+++.+||
T Consensus 86 ~~~G~~~~~~l~~f~ 100 (100)
T cd02999 86 RYNGTRTLDSLAAFY 100 (100)
T ss_pred EecCCCCHHHHHhhC
Confidence 999999999998875
No 21
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.90 E-value=5.3e-23 Score=134.59 Aligned_cols=98 Identities=33% Similarity=0.552 Sum_probs=86.9
Q ss_pred cccCChhhHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCCchhHHHhCCCCCCcEEEEEc
Q 030928 62 AKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEKYPQIADTYRIEALPTFILFK 140 (169)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~ 140 (169)
+.+++.++|++.+. + .++|.||++||++|+.+.|.+++++..+++ ++.++.+|++++++++++|+|+++||+++++
T Consensus 3 v~~l~~~~f~~~~~--~-~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 79 (101)
T cd02994 3 VVELTDSNWTLVLE--G-EWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHAK 79 (101)
T ss_pred eEEcChhhHHHHhC--C-CEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEeC
Confidence 34567788998763 3 378999999999999999999999998764 5999999999999999999999999999999
Q ss_pred CCceeeeeeCCCCHHHHHHHHHh
Q 030928 141 DGKPSDRFEGAFSKDQLIQRIEN 163 (169)
Q Consensus 141 ~g~~~~~~~G~~~~~~l~~~i~~ 163 (169)
+|++ .++.|..+.+++.++|++
T Consensus 80 ~g~~-~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 80 DGVF-RRYQGPRDKEDLISFIEE 101 (101)
T ss_pred CCCE-EEecCCCCHHHHHHHHhC
Confidence 9985 789999999999999874
No 22
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.8e-23 Score=136.37 Aligned_cols=92 Identities=34% Similarity=0.738 Sum_probs=82.2
Q ss_pred HHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEcCCceeeeeeC
Q 030928 71 DDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSDRFEG 150 (169)
Q Consensus 71 ~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~G 150 (169)
.......+++++|+||++||++|+.+.|.+++++.+|++ +.|+.||+|+.++++++++|.++||++||++|+.+.++.|
T Consensus 14 ~~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~~~vG 92 (106)
T KOG0907|consen 14 LSAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVDEVVG 92 (106)
T ss_pred HHHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEEEEec
Confidence 334444569999999999999999999999999999998 9999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhh
Q 030928 151 AFSKDQLIQRIENS 164 (169)
Q Consensus 151 ~~~~~~l~~~i~~~ 164 (169)
.... ++++.|..+
T Consensus 93 a~~~-~l~~~i~~~ 105 (106)
T KOG0907|consen 93 ANKA-ELEKKIAKH 105 (106)
T ss_pred CCHH-HHHHHHHhc
Confidence 8665 777777653
No 23
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.90 E-value=1.1e-22 Score=133.03 Aligned_cols=97 Identities=25% Similarity=0.634 Sum_probs=88.0
Q ss_pred ccCChhhHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC---CeEEEEEeCCCchhHHHhCCCCCCcEEEEE
Q 030928 63 KKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKD---KIQVVKIDTEKYPQIADTYRIEALPTFILF 139 (169)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~---~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~ 139 (169)
..++.++|++.+.+ + +++|+||++||++|+.+.|.++++++++.+ ++.++.+|++.+.+++++|+|.++||+++|
T Consensus 3 ~~l~~~~f~~~~~~-~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 80 (102)
T cd03005 3 LELTEDNFDHHIAE-G-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLF 80 (102)
T ss_pred eECCHHHHHHHhhc-C-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEE
Confidence 45677889988854 3 599999999999999999999999999976 699999999999999999999999999999
Q ss_pred cCCceeeeeeCCCCHHHHHHHH
Q 030928 140 KDGKPSDRFEGAFSKDQLIQRI 161 (169)
Q Consensus 140 ~~g~~~~~~~G~~~~~~l~~~i 161 (169)
++|+.+.++.|..+.+++.+||
T Consensus 81 ~~g~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 81 KDGEKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred eCCCeeeEeeCCCCHHHHHhhC
Confidence 9999999999999999988775
No 24
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.89 E-value=1.7e-22 Score=132.36 Aligned_cols=100 Identities=28% Similarity=0.567 Sum_probs=90.7
Q ss_pred cccCChhhHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEcC
Q 030928 62 AKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKD 141 (169)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~ 141 (169)
+.+++.++|.+.+.+.+++++|.||++||++|+.+.|.|.++++++.+++.|+.+|++++.+++++|+|+++|++++|++
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~ 81 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVFGA 81 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEECC
Confidence 34567788998887777789999999999999999999999999998889999999999999999999999999999998
Q ss_pred C-ceeeeeeCCCCHHHHHHHH
Q 030928 142 G-KPSDRFEGAFSKDQLIQRI 161 (169)
Q Consensus 142 g-~~~~~~~G~~~~~~l~~~i 161 (169)
| .....+.|..+.+++.+|+
T Consensus 82 ~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 82 GKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred CCcceeecCCCCCHHHHHHHh
Confidence 8 5567889999999999886
No 25
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.89 E-value=2.9e-22 Score=130.44 Aligned_cols=100 Identities=46% Similarity=0.872 Sum_probs=92.0
Q ss_pred ChhhHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEcCCcee
Q 030928 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPS 145 (169)
Q Consensus 66 ~~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g~~~ 145 (169)
+.++|.+.+.+.+++++|+||++||++|+.+.+.++++++++++++.|+.+|++++++++++|+|.++|++++|++|+.+
T Consensus 2 ~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~ 81 (101)
T TIGR01068 2 TDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGKEV 81 (101)
T ss_pred CHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCcEe
Confidence 45678887766677999999999999999999999999999987899999999999999999999999999999999999
Q ss_pred eeeeCCCCHHHHHHHHHhhh
Q 030928 146 DRFEGAFSKDQLIQRIENSL 165 (169)
Q Consensus 146 ~~~~G~~~~~~l~~~i~~~l 165 (169)
.++.|..+.+++.++|++.+
T Consensus 82 ~~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 82 DRSVGALPKAALKQLINKNL 101 (101)
T ss_pred eeecCCCCHHHHHHHHHhhC
Confidence 99999999999999998764
No 26
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.89 E-value=1.3e-22 Score=149.57 Aligned_cols=107 Identities=28% Similarity=0.489 Sum_probs=97.0
Q ss_pred eecccCChhhHHHHHhcC----CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcE
Q 030928 60 VEAKKQTFSSLDDLLQKS----DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPT 135 (169)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~----~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt 135 (169)
..+.+++.++|++.+... +++++|+||++||++|+.+.|.|+++++++++.+.|+.+|++++++++++|+|+++||
T Consensus 30 ~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~PT 109 (224)
T PTZ00443 30 NALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYPT 109 (224)
T ss_pred CCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCCE
Confidence 346677888999887543 5799999999999999999999999999999889999999999999999999999999
Q ss_pred EEEEcCCceeeeeeCCCCHHHHHHHHHhhhc
Q 030928 136 FILFKDGKPSDRFEGAFSKDQLIQRIENSLS 166 (169)
Q Consensus 136 ~~~~~~g~~~~~~~G~~~~~~l~~~i~~~l~ 166 (169)
+++|++|+++..+.|..+.+++.+|+.+.++
T Consensus 110 l~~f~~G~~v~~~~G~~s~e~L~~fi~~~~~ 140 (224)
T PTZ00443 110 LLLFDKGKMYQYEGGDRSTEKLAAFALGDFK 140 (224)
T ss_pred EEEEECCEEEEeeCCCCCHHHHHHHHHHHHH
Confidence 9999999988888899999999999988764
No 27
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.89 E-value=3e-22 Score=138.77 Aligned_cols=99 Identities=27% Similarity=0.565 Sum_probs=88.0
Q ss_pred hHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCc--hhHHHhCCCCCCcEEEEEc-CCcee
Q 030928 69 SLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKY--PQIADTYRIEALPTFILFK-DGKPS 145 (169)
Q Consensus 69 ~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~--~~l~~~~~v~~~Pt~~~~~-~g~~~ 145 (169)
+|++.+ ..++++||+||++||++|+.+.|.++++++++.+++.|+.||+|.. .+++++|+|.++||+++|+ +|+++
T Consensus 12 ~~~~a~-~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~v 90 (142)
T cd02950 12 PPEVAL-SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNEE 90 (142)
T ss_pred CHHHHH-hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCEE
Confidence 456554 4578999999999999999999999999999987788888888764 5889999999999999995 89999
Q ss_pred eeeeCCCCHHHHHHHHHhhhccC
Q 030928 146 DRFEGAFSKDQLIQRIENSLSVK 168 (169)
Q Consensus 146 ~~~~G~~~~~~l~~~i~~~l~~~ 168 (169)
.++.|..+.+++.++|+++++..
T Consensus 91 ~~~~G~~~~~~l~~~l~~l~~~~ 113 (142)
T cd02950 91 GQSIGLQPKQVLAQNLDALVAGE 113 (142)
T ss_pred EEEeCCCCHHHHHHHHHHHHcCC
Confidence 99999999999999999998653
No 28
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.89 E-value=3.5e-22 Score=130.45 Aligned_cols=99 Identities=31% Similarity=0.652 Sum_probs=90.1
Q ss_pred ChhhHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC--CeEEEEEeCCCchhHHHhCCCCCCcEEEEEcCCc
Q 030928 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKD--KIQVVKIDTEKYPQIADTYRIEALPTFILFKDGK 143 (169)
Q Consensus 66 ~~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~--~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g~ 143 (169)
+.++|++.+. .+++++|.||++||+.|+.+.+.+++++..+.+ ++.++.+|++++++++++|+|+++|++++|++|+
T Consensus 2 ~~~~~~~~~~-~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~~ 80 (102)
T TIGR01126 2 TASNFDDIVL-SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKGK 80 (102)
T ss_pred chhhHHHHhc-cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCCC
Confidence 5577888875 688999999999999999999999999999886 6999999999999999999999999999998777
Q ss_pred eeeeeeCCCCHHHHHHHHHhhh
Q 030928 144 PSDRFEGAFSKDQLIQRIENSL 165 (169)
Q Consensus 144 ~~~~~~G~~~~~~l~~~i~~~l 165 (169)
.+.++.|..+.+++..+|++++
T Consensus 81 ~~~~~~g~~~~~~l~~~i~~~~ 102 (102)
T TIGR01126 81 KPVDYEGGRDLEAIVEFVNEKS 102 (102)
T ss_pred cceeecCCCCHHHHHHHHHhcC
Confidence 6788999999999999998753
No 29
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.88 E-value=6.6e-22 Score=129.72 Aligned_cols=98 Identities=32% Similarity=0.640 Sum_probs=87.4
Q ss_pred ccCChhhHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhc--CCeEEEEEeCCC--chhHHHhCCCCCCcEEEE
Q 030928 63 KKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALK--DKIQVVKIDTEK--YPQIADTYRIEALPTFIL 138 (169)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~--~~v~~~~v~~d~--~~~l~~~~~v~~~Pt~~~ 138 (169)
.+++..+|++.+.+ +++++|+||++||++|+.+.|.++++++.+. +.+.++.+|++. ++.++++|+|+++||+++
T Consensus 3 ~~l~~~~~~~~~~~-~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~ 81 (104)
T cd02997 3 VHLTDEDFRKFLKK-EKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKY 81 (104)
T ss_pred EEechHhHHHHHhh-CCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEE
Confidence 34566788887755 5699999999999999999999999999887 568899999998 899999999999999999
Q ss_pred EcCCceeeeeeCCCCHHHHHHHH
Q 030928 139 FKDGKPSDRFEGAFSKDQLIQRI 161 (169)
Q Consensus 139 ~~~g~~~~~~~G~~~~~~l~~~i 161 (169)
|++|+.+.++.|..+.+++.+||
T Consensus 82 ~~~g~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 82 FENGKFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred EeCCCeeEEeCCCCCHHHHHhhC
Confidence 99999999999999999998775
No 30
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.88 E-value=1.3e-21 Score=128.75 Aligned_cols=99 Identities=20% Similarity=0.332 Sum_probs=84.7
Q ss_pred hhHHHHHhc-CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEcCCceee
Q 030928 68 SSLDDLLQK-SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSD 146 (169)
Q Consensus 68 ~~~~~~~~~-~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~ 146 (169)
+++++.+.. .++++||.|+++||++|+.+.|.++++++++++.+.|+.||+|+.++++++|+|...||++||++|+.+.
T Consensus 3 ~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh~~ 82 (114)
T cd02986 3 KEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQHMK 82 (114)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCcEEE
Confidence 456666654 4899999999999999999999999999999866999999999999999999999999999999999875
Q ss_pred eeeCCC----------CHHHHHHHHHhhhc
Q 030928 147 RFEGAF----------SKDQLIQRIENSLS 166 (169)
Q Consensus 147 ~~~G~~----------~~~~l~~~i~~~l~ 166 (169)
.-.|.. +.+++.+.++.+.+
T Consensus 83 ~d~gt~~~~k~~~~~~~k~~~idi~e~~yr 112 (114)
T cd02986 83 VDYGSPDHTKFVGSFKTKQDFIDLIEVIYR 112 (114)
T ss_pred EecCCCCCcEEEEEcCchhHHHHHHHHHHc
Confidence 544432 46888888877654
No 31
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.88 E-value=1.1e-21 Score=127.52 Aligned_cols=93 Identities=32% Similarity=0.533 Sum_probs=85.9
Q ss_pred HHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEcCCceeeeee
Q 030928 70 LDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSDRFE 149 (169)
Q Consensus 70 ~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~ 149 (169)
++..+.+.+++++++||++||+.|+.+.|.++++++++++++.++.+|++++++++++++|.++|+++++++|+++.++.
T Consensus 5 ~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~~ 84 (97)
T cd02949 5 LRKLYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEIS 84 (97)
T ss_pred HHHHHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEEe
Confidence 44556667899999999999999999999999999999878999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHH
Q 030928 150 GAFSKDQLIQRIE 162 (169)
Q Consensus 150 G~~~~~~l~~~i~ 162 (169)
|..+.+++.++|+
T Consensus 85 g~~~~~~~~~~l~ 97 (97)
T cd02949 85 GVKMKSEYREFIE 97 (97)
T ss_pred CCccHHHHHHhhC
Confidence 9999999988873
No 32
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.88 E-value=1.5e-21 Score=136.07 Aligned_cols=91 Identities=31% Similarity=0.601 Sum_probs=81.8
Q ss_pred eecccCChhhHHHHHhc-CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCCchhHHHhCCCCC-----
Q 030928 60 VEAKKQTFSSLDDLLQK-SDKPVLVDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEKYPQIADTYRIEA----- 132 (169)
Q Consensus 60 ~~~~~~~~~~~~~~~~~-~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~d~~~~l~~~~~v~~----- 132 (169)
..+.+++.++|++.+.. .+++++|+||++||++|+.+.|.++++++++++ ++.|+.||++++++++++|+|.+
T Consensus 28 ~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~ 107 (152)
T cd02962 28 EHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSK 107 (152)
T ss_pred CccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcC
Confidence 45566778889988754 467999999999999999999999999999875 59999999999999999999988
Q ss_pred -CcEEEEEcCCceeeeeeC
Q 030928 133 -LPTFILFKDGKPSDRFEG 150 (169)
Q Consensus 133 -~Pt~~~~~~g~~~~~~~G 150 (169)
+||+++|++|+.+.++.|
T Consensus 108 ~~PT~ilf~~Gk~v~r~~G 126 (152)
T cd02962 108 QLPTIILFQGGKEVARRPY 126 (152)
T ss_pred CCCEEEEEECCEEEEEEec
Confidence 999999999999999987
No 33
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.87 E-value=2.6e-21 Score=125.50 Aligned_cols=94 Identities=28% Similarity=0.684 Sum_probs=82.7
Q ss_pred hhhHHHHHhcC-CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEcCCcee
Q 030928 67 FSSLDDLLQKS-DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPS 145 (169)
Q Consensus 67 ~~~~~~~~~~~-~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g~~~ 145 (169)
.++|++.+... +++++|+||++||++|+.+.+.+++++.++.+++.++.+|.++.++++++|+|+++||+++|++|+++
T Consensus 2 ~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 2 EEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTIV 81 (97)
T ss_pred HHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCEEE
Confidence 45677777655 68999999999999999999999999999766799999999999999999999999999999999999
Q ss_pred eeeeCCCCHHHHHHHH
Q 030928 146 DRFEGAFSKDQLIQRI 161 (169)
Q Consensus 146 ~~~~G~~~~~~l~~~i 161 (169)
.++.|. +.++|.+.|
T Consensus 82 ~~~~g~-~~~~l~~~~ 96 (97)
T cd02984 82 DRVSGA-DPKELAKKV 96 (97)
T ss_pred EEEeCC-CHHHHHHhh
Confidence 998886 456666554
No 34
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.87 E-value=2e-21 Score=129.74 Aligned_cols=88 Identities=25% Similarity=0.428 Sum_probs=79.3
Q ss_pred ccCChhhHHHHHhcC--CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEc
Q 030928 63 KKQTFSSLDDLLQKS--DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFK 140 (169)
Q Consensus 63 ~~~~~~~~~~~~~~~--~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~ 140 (169)
.+++.++|.+.+.+. +++++|+||++||++|+.+.|.+++++.++++ +.|+.||++++ +++++|+|.++||+++|+
T Consensus 7 ~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~-v~f~~vd~~~~-~l~~~~~i~~~Pt~~~f~ 84 (113)
T cd02957 7 REISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE-TKFVKINAEKA-FLVNYLDIKVLPTLLVYK 84 (113)
T ss_pred EEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC-cEEEEEEchhh-HHHHhcCCCcCCEEEEEE
Confidence 445667888888665 48999999999999999999999999999985 89999999998 999999999999999999
Q ss_pred CCceeeeeeCCC
Q 030928 141 DGKPSDRFEGAF 152 (169)
Q Consensus 141 ~g~~~~~~~G~~ 152 (169)
+|+.+.++.|..
T Consensus 85 ~G~~v~~~~G~~ 96 (113)
T cd02957 85 NGELIDNIVGFE 96 (113)
T ss_pred CCEEEEEEecHH
Confidence 999999998854
No 35
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.87 E-value=1.8e-21 Score=127.73 Aligned_cols=99 Identities=29% Similarity=0.661 Sum_probs=88.0
Q ss_pred ccCChhhHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhc--CCeEEEEEeCCC-chhHHHhCCCCCCcEEEEE
Q 030928 63 KKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALK--DKIQVVKIDTEK-YPQIADTYRIEALPTFILF 139 (169)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~--~~v~~~~v~~d~-~~~l~~~~~v~~~Pt~~~~ 139 (169)
.+++.++|++.+.+.+++++|.||++||++|+.+.|.++++++.+. +++.++.+|++. +++++++|+|.++|++++|
T Consensus 3 ~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~~ 82 (105)
T cd02998 3 VELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKFF 82 (105)
T ss_pred EEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEEE
Confidence 3556778888887777899999999999999999999999999987 469999999999 9999999999999999999
Q ss_pred cCC-ceeeeeeCCCCHHHHHHHH
Q 030928 140 KDG-KPSDRFEGAFSKDQLIQRI 161 (169)
Q Consensus 140 ~~g-~~~~~~~G~~~~~~l~~~i 161 (169)
++| +....+.|..+.+++.+||
T Consensus 83 ~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 83 PKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred eCCCCCccccCCccCHHHHHhhC
Confidence 855 6777889999999998875
No 36
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.87 E-value=2.1e-21 Score=127.29 Aligned_cols=98 Identities=33% Similarity=0.693 Sum_probs=87.9
Q ss_pred ccCChhhHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC--CeEEEEEeCCCchhHHHhCCCCCCcEEEEEc
Q 030928 63 KKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKD--KIQVVKIDTEKYPQIADTYRIEALPTFILFK 140 (169)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~--~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~ 140 (169)
.+++.++|++.+.+.+++++|+||++||++|+.+.|.++++++.+.+ ++.++.+|++++ +++..+++.++||+++|+
T Consensus 3 ~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~~~ 81 (104)
T cd02995 3 KVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILFFP 81 (104)
T ss_pred EEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEEEc
Confidence 45678899998888788999999999999999999999999999876 599999999987 688899999999999999
Q ss_pred CCc--eeeeeeCCCCHHHHHHHH
Q 030928 141 DGK--PSDRFEGAFSKDQLIQRI 161 (169)
Q Consensus 141 ~g~--~~~~~~G~~~~~~l~~~i 161 (169)
+|+ ...++.|..+.+++.+||
T Consensus 82 ~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 82 AGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred CCCcCCceEccCCcCHHHHHhhC
Confidence 887 677899999999998875
No 37
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.86 E-value=3.4e-21 Score=126.73 Aligned_cols=94 Identities=28% Similarity=0.571 Sum_probs=82.5
Q ss_pred hhHHHHHhcCCCcEEEEEEcCCChhhhhhhHHH---HHHHHHhcCCeEEEEEeCCC----chhHHHhCCCCCCcEEEEEc
Q 030928 68 SSLDDLLQKSDKPVLVDFYATWCGPCQYMAPIL---NEVGAALKDKIQVVKIDTEK----YPQIADTYRIEALPTFILFK 140 (169)
Q Consensus 68 ~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l---~~~~~~~~~~v~~~~v~~d~----~~~l~~~~~v~~~Pt~~~~~ 140 (169)
+.|.+.+ +.+++++|+||++||++|+.+.+.+ +++++.+++++.++.+|+++ ..+++++|+|+++||+++|+
T Consensus 2 ~~~~~~~-~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~ 80 (104)
T cd02953 2 AALAQAL-AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYG 80 (104)
T ss_pred HHHHHHH-HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEEC
Confidence 3566666 4578999999999999999999988 67888887679999999987 57899999999999999998
Q ss_pred --CCceeeeeeCCCCHHHHHHHHH
Q 030928 141 --DGKPSDRFEGAFSKDQLIQRIE 162 (169)
Q Consensus 141 --~g~~~~~~~G~~~~~~l~~~i~ 162 (169)
+|+++.++.|..+.+++.++|+
T Consensus 81 ~~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 81 PGGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred CCCCCCCcccccccCHHHHHHHhC
Confidence 7999999999999999988873
No 38
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.86 E-value=7.4e-21 Score=126.23 Aligned_cols=100 Identities=20% Similarity=0.467 Sum_probs=84.7
Q ss_pred cccCChhhHHHHHh--cCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC-chhHHH-hCCCCCCcEE
Q 030928 62 AKKQTFSSLDDLLQ--KSDKPVLVDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEK-YPQIAD-TYRIEALPTF 136 (169)
Q Consensus 62 ~~~~~~~~~~~~~~--~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~d~-~~~l~~-~~~v~~~Pt~ 136 (169)
+.+++.++|++++. +.+++++|.||++||++|+++.|.|+++++.+++ ++.++.||++. +..++. .++|+++||+
T Consensus 3 v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti 82 (109)
T cd02993 3 VVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPTI 82 (109)
T ss_pred ceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCEE
Confidence 44567788888874 4578999999999999999999999999999986 49999999998 577887 4999999999
Q ss_pred EEEcCC-ceeeeeeCC-CCHHHHHHHH
Q 030928 137 ILFKDG-KPSDRFEGA-FSKDQLIQRI 161 (169)
Q Consensus 137 ~~~~~g-~~~~~~~G~-~~~~~l~~~i 161 (169)
++|++| .....|.|. .+.+.|..||
T Consensus 83 ~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 83 LFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred EEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 999754 567788885 7999888775
No 39
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.86 E-value=9.5e-21 Score=124.64 Aligned_cols=94 Identities=35% Similarity=0.712 Sum_probs=81.9
Q ss_pred hhHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC---CeEEEEEeCCCchhHHHhCCCCCCcEEEEEcCCce
Q 030928 68 SSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKD---KIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKP 144 (169)
Q Consensus 68 ~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~---~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g~~ 144 (169)
++|++. ..+++++|.||++||++|+.+.|.|+++++++++ .+.++.+|+++.++++++|+|.++||+++|++|.
T Consensus 7 ~~~~~~--~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~- 83 (104)
T cd03000 7 DSFKDV--RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDL- 83 (104)
T ss_pred hhhhhh--ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCC-
Confidence 456664 2367999999999999999999999999999853 4889999999999999999999999999997764
Q ss_pred eeeeeCCCCHHHHHHHHHhh
Q 030928 145 SDRFEGAFSKDQLIQRIENS 164 (169)
Q Consensus 145 ~~~~~G~~~~~~l~~~i~~~ 164 (169)
..++.|..+.+++.+++++.
T Consensus 84 ~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 84 AYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred ceeecCCCCHHHHHHHHHhh
Confidence 56789999999999999764
No 40
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.85 E-value=1.1e-20 Score=126.03 Aligned_cols=84 Identities=27% Similarity=0.455 Sum_probs=76.7
Q ss_pred hhhHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEcCCceee
Q 030928 67 FSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSD 146 (169)
Q Consensus 67 ~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~ 146 (169)
.++|.+.+.+ +++++|+||++||++|+.+.|.++++++++++ +.|+.||.+++++++++|+|.++||+++|++|+++.
T Consensus 12 ~~~~~~~i~~-~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~-i~f~~Vd~~~~~~l~~~~~v~~vPt~l~fk~G~~v~ 89 (113)
T cd02989 12 EKEFFEIVKS-SERVVCHFYHPEFFRCKIMDKHLEILAKKHLE-TKFIKVNAEKAPFLVEKLNIKVLPTVILFKNGKTVD 89 (113)
T ss_pred HHHHHHHHhC-CCcEEEEEECCCCccHHHHHHHHHHHHHHcCC-CEEEEEEcccCHHHHHHCCCccCCEEEEEECCEEEE
Confidence 3778888754 57999999999999999999999999999886 999999999999999999999999999999999998
Q ss_pred eeeCCC
Q 030928 147 RFEGAF 152 (169)
Q Consensus 147 ~~~G~~ 152 (169)
++.|..
T Consensus 90 ~~~g~~ 95 (113)
T cd02989 90 RIVGFE 95 (113)
T ss_pred EEECcc
Confidence 887653
No 41
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.85 E-value=2e-20 Score=121.29 Aligned_cols=97 Identities=34% Similarity=0.685 Sum_probs=86.6
Q ss_pred cCChhhHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHh--cCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEcC
Q 030928 64 KQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAAL--KDKIQVVKIDTEKYPQIADTYRIEALPTFILFKD 141 (169)
Q Consensus 64 ~~~~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~--~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~ 141 (169)
+++.++|.+.+.+. ++++|.||++||++|+.+.+.++++++.+ .+++.|+.+|++++.+++++|+|.++||+++|++
T Consensus 2 ~l~~~~~~~~i~~~-~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~ 80 (101)
T cd02961 2 ELTDDNFDELVKDS-KDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPN 80 (101)
T ss_pred cccHHHHHHHHhCC-CcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcC
Confidence 35667888888654 49999999999999999999999999999 5679999999999999999999999999999986
Q ss_pred C-ceeeeeeCCCCHHHHHHHH
Q 030928 142 G-KPSDRFEGAFSKDQLIQRI 161 (169)
Q Consensus 142 g-~~~~~~~G~~~~~~l~~~i 161 (169)
| +...++.|..+.+++.+|+
T Consensus 81 ~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 81 GSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred CCcccccCCCCcCHHHHHhhC
Confidence 6 7888999999999888764
No 42
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.85 E-value=2.5e-20 Score=124.45 Aligned_cols=96 Identities=22% Similarity=0.343 Sum_probs=83.2
Q ss_pred HHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEcCCceee--e
Q 030928 70 LDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSD--R 147 (169)
Q Consensus 70 ~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~--~ 147 (169)
|.+.+. .+..++|+||++||++|+.+.|.+++++.++ +++.|+.+|.+++++++++|+|.++||++++++|+... +
T Consensus 15 ~~~~l~-~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~ 92 (113)
T cd02975 15 FFKEMK-NPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIR 92 (113)
T ss_pred HHHHhC-CCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEE
Confidence 444443 3567889999999999999999999999887 56999999999999999999999999999998765544 7
Q ss_pred eeCCCCHHHHHHHHHhhhcc
Q 030928 148 FEGAFSKDQLIQRIENSLSV 167 (169)
Q Consensus 148 ~~G~~~~~~l~~~i~~~l~~ 167 (169)
+.|..+..++.++|+.++..
T Consensus 93 ~~G~~~~~el~~~i~~i~~~ 112 (113)
T cd02975 93 YYGLPAGYEFASLIEDIVRV 112 (113)
T ss_pred EEecCchHHHHHHHHHHHhc
Confidence 88999999999999998764
No 43
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.84 E-value=7.2e-20 Score=124.23 Aligned_cols=98 Identities=24% Similarity=0.404 Sum_probs=83.1
Q ss_pred hHHHHHhcCC-CcEEEEEEcCCChhhhhhhHHHH---HHHHHhcCCeEEEEEeCCCc-------------hhHHHhCCCC
Q 030928 69 SLDDLLQKSD-KPVLVDFYATWCGPCQYMAPILN---EVGAALKDKIQVVKIDTEKY-------------PQIADTYRIE 131 (169)
Q Consensus 69 ~~~~~~~~~~-~~vvv~f~~~~C~~C~~~~~~l~---~~~~~~~~~v~~~~v~~d~~-------------~~l~~~~~v~ 131 (169)
.+.+.. +.+ ++++|+||++||++|+.+++.+. ++.+.+.+++.++.+|.+.. .+++.+|+|.
T Consensus 5 ~~~~a~-~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~ 83 (125)
T cd02951 5 DLAEAA-ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVR 83 (125)
T ss_pred HHHHHH-HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCc
Confidence 445554 346 89999999999999999999874 56666666788999998864 6899999999
Q ss_pred CCcEEEEEc-C-CceeeeeeCCCCHHHHHHHHHhhhcc
Q 030928 132 ALPTFILFK-D-GKPSDRFEGAFSKDQLIQRIENSLSV 167 (169)
Q Consensus 132 ~~Pt~~~~~-~-g~~~~~~~G~~~~~~l~~~i~~~l~~ 167 (169)
++||+++++ + |+++.++.|..+.+++.++|+.+++.
T Consensus 84 ~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~ 121 (125)
T cd02951 84 FTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEK 121 (125)
T ss_pred cccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhh
Confidence 999999997 5 69999999999999999999988754
No 44
>PTZ00051 thioredoxin; Provisional
Probab=99.83 E-value=7.7e-20 Score=118.82 Aligned_cols=90 Identities=33% Similarity=0.732 Sum_probs=79.7
Q ss_pred ChhhHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEcCCcee
Q 030928 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPS 145 (169)
Q Consensus 66 ~~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g~~~ 145 (169)
+.+++.+++. .+++++|+||++||++|+.+.+.++++++++.+ +.|+.+|++++.+++++|+|.++||+++|++|+++
T Consensus 7 ~~~~~~~~~~-~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 84 (98)
T PTZ00051 7 SQAEFESTLS-QNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK-MVFVKVDVDELSEVAEKENITSMPTFKVFKNGSVV 84 (98)
T ss_pred CHHHHHHHHh-cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC-cEEEEEECcchHHHHHHCCCceeeEEEEEeCCeEE
Confidence 4466777764 578999999999999999999999999998875 99999999999999999999999999999999999
Q ss_pred eeeeCCCCHHHHH
Q 030928 146 DRFEGAFSKDQLI 158 (169)
Q Consensus 146 ~~~~G~~~~~~l~ 158 (169)
.++.|. ..++|+
T Consensus 85 ~~~~G~-~~~~~~ 96 (98)
T PTZ00051 85 DTLLGA-NDEALK 96 (98)
T ss_pred EEEeCC-CHHHhh
Confidence 999996 555554
No 45
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.83 E-value=9.4e-20 Score=130.28 Aligned_cols=100 Identities=18% Similarity=0.289 Sum_probs=84.5
Q ss_pred cccCCh-hhHHHHHhcCC--CcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEE
Q 030928 62 AKKQTF-SSLDDLLQKSD--KPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFIL 138 (169)
Q Consensus 62 ~~~~~~-~~~~~~~~~~~--~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~ 138 (169)
+.+++. ++|.+.+.+.+ .++||+||++||++|+.+.|.|++++.+++. +.|+.||+++. +++.+|+|.++||+++
T Consensus 64 v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~-vkF~kVd~d~~-~l~~~f~v~~vPTlll 141 (175)
T cd02987 64 VYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA-VKFCKIRASAT-GASDEFDTDALPALLV 141 (175)
T ss_pred EEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCC-eEEEEEeccch-hhHHhCCCCCCCEEEE
Confidence 344455 88888886543 4999999999999999999999999999975 99999999987 8999999999999999
Q ss_pred EcCCceeeeeeCCC-------CHHHHHHHHHh
Q 030928 139 FKDGKPSDRFEGAF-------SKDQLIQRIEN 163 (169)
Q Consensus 139 ~~~g~~~~~~~G~~-------~~~~l~~~i~~ 163 (169)
|++|+.+.++.|.. +.+.|+.+|.+
T Consensus 142 yk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~ 173 (175)
T cd02987 142 YKGGELIGNFVRVTEDLGEDFDAEDLESFLVE 173 (175)
T ss_pred EECCEEEEEEechHHhcCCCCCHHHHHHHHHh
Confidence 99999998887643 45666666643
No 46
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.82 E-value=4.5e-19 Score=119.76 Aligned_cols=99 Identities=20% Similarity=0.225 Sum_probs=80.3
Q ss_pred ecccCChhhHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCch-----------hHHHhCC
Q 030928 61 EAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYP-----------QIADTYR 129 (169)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~-----------~l~~~~~ 129 (169)
.+..++.+++.+.+.+ ++.++|+|+++|||+|+.+.|.|++++++. ++.++.||+|.+. ++.++|+
T Consensus 7 ~~~~it~~~~~~~i~~-~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~--~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~ 83 (122)
T TIGR01295 7 GLEVTTVVRALEALDK-KETATFFIGRKTCPYCRKFSGTLSGVVAQT--KAPIYYIDSENNGSFEMSSLNDLTAFRSRFG 83 (122)
T ss_pred cceecCHHHHHHHHHc-CCcEEEEEECCCChhHHHHhHHHHHHHHhc--CCcEEEEECCCccCcCcccHHHHHHHHHHcC
Confidence 3456677888888854 678999999999999999999999999983 4677888887542 4556654
Q ss_pred ----CCCCcEEEEEcCCceeeeeeC-CCCHHHHHHHHH
Q 030928 130 ----IEALPTFILFKDGKPSDRFEG-AFSKDQLIQRIE 162 (169)
Q Consensus 130 ----v~~~Pt~~~~~~g~~~~~~~G-~~~~~~l~~~i~ 162 (169)
|.++||+++|++|+.+.+..| ..+.++|.+++.
T Consensus 84 i~~~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 84 IPTSFMGTPTFVHITDGKQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred CcccCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHhh
Confidence 667999999999999999999 556999988874
No 47
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.81 E-value=5.3e-19 Score=112.52 Aligned_cols=92 Identities=41% Similarity=0.920 Sum_probs=82.5
Q ss_pred hHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEcCCceeeee
Q 030928 69 SLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSDRF 148 (169)
Q Consensus 69 ~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~ 148 (169)
+|++.+... ++++|+||++||+.|+.+.+.++++... .+++.|+.+|++.+.+++++|++.++|+++++++|+.+..+
T Consensus 2 ~~~~~~~~~-~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~ 79 (93)
T cd02947 2 EFEELIKSA-KPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVDRV 79 (93)
T ss_pred chHHHHhcC-CcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEEEE
Confidence 456565443 8999999999999999999999999988 55699999999999999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHH
Q 030928 149 EGAFSKDQLIQRIE 162 (169)
Q Consensus 149 ~G~~~~~~l~~~i~ 162 (169)
.|..+.+++.++|+
T Consensus 80 ~g~~~~~~l~~~i~ 93 (93)
T cd02947 80 VGADPKEELEEFLE 93 (93)
T ss_pred ecCCCHHHHHHHhC
Confidence 99999899988873
No 48
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.81 E-value=5.7e-19 Score=118.06 Aligned_cols=83 Identities=24% Similarity=0.494 Sum_probs=72.7
Q ss_pred cccCChhhHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC---CeEEEEEeCC--CchhHHHhCCCCCCcEE
Q 030928 62 AKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKD---KIQVVKIDTE--KYPQIADTYRIEALPTF 136 (169)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~---~v~~~~v~~d--~~~~l~~~~~v~~~Pt~ 136 (169)
+.+++.++|++.+.+.+++++|+||++||++|+.+.|.|+++++++.+ .+.|+.+|++ .+.+++++|+|+++||+
T Consensus 3 v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~ 82 (114)
T cd02992 3 VIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTL 82 (114)
T ss_pred eEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEE
Confidence 456678899999888778999999999999999999999999998753 5889999975 46789999999999999
Q ss_pred EEEcCCce
Q 030928 137 ILFKDGKP 144 (169)
Q Consensus 137 ~~~~~g~~ 144 (169)
++|++|+.
T Consensus 83 ~lf~~~~~ 90 (114)
T cd02992 83 RYFPPFSK 90 (114)
T ss_pred EEECCCCc
Confidence 99987763
No 49
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.9e-19 Score=144.31 Aligned_cols=106 Identities=24% Similarity=0.598 Sum_probs=95.7
Q ss_pred cceecccCChhhHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC---CeEEEEEeCCCchhHHHhCCCCCCc
Q 030928 58 PVVEAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKD---KIQVVKIDTEKYPQIADTYRIEALP 134 (169)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~---~v~~~~v~~d~~~~l~~~~~v~~~P 134 (169)
+...+-.++.++|.+.+.. ...++|.||||||++|+.+.|.+++.+..+.. .+.++.||+.++.++|.+|+|+|+|
T Consensus 23 ~~~~Vl~Lt~dnf~~~i~~-~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyP 101 (493)
T KOG0190|consen 23 AEEDVLVLTKDNFKETING-HEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYP 101 (493)
T ss_pred cccceEEEecccHHHHhcc-CceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCC
Confidence 4455667788999999854 56999999999999999999999999998875 4889999999999999999999999
Q ss_pred EEEEEcCCceeeeeeCCCCHHHHHHHHHhh
Q 030928 135 TFILFKDGKPSDRFEGAFSKDQLIQRIENS 164 (169)
Q Consensus 135 t~~~~~~g~~~~~~~G~~~~~~l~~~i~~~ 164 (169)
|+.+|+||+....|.|..+.+.+..|+.+.
T Consensus 102 TlkiFrnG~~~~~Y~G~r~adgIv~wl~kq 131 (493)
T KOG0190|consen 102 TLKIFRNGRSAQDYNGPREADGIVKWLKKQ 131 (493)
T ss_pred eEEEEecCCcceeccCcccHHHHHHHHHhc
Confidence 999999999878899999999999999764
No 50
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.80 E-value=7.3e-19 Score=142.61 Aligned_cols=104 Identities=27% Similarity=0.613 Sum_probs=93.6
Q ss_pred cccCChhhHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC---CeEEEEEeCCCchhHHHhCCCCCCcEEEE
Q 030928 62 AKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKD---KIQVVKIDTEKYPQIADTYRIEALPTFIL 138 (169)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~---~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~ 138 (169)
+..++.++|++.+.+ +++++|+||++||++|+.+.|.+.++++.+.+ ++.|+.|||+++.++|++|+|.++||+++
T Consensus 3 v~~l~~~~~~~~i~~-~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 81 (462)
T TIGR01130 3 VLVLTKDNFDDFIKS-HEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKI 81 (462)
T ss_pred ceECCHHHHHHHHhc-CCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEE
Confidence 445678899988854 67999999999999999999999999988764 39999999999999999999999999999
Q ss_pred EcCCce-eeeeeCCCCHHHHHHHHHhhhc
Q 030928 139 FKDGKP-SDRFEGAFSKDQLIQRIENSLS 166 (169)
Q Consensus 139 ~~~g~~-~~~~~G~~~~~~l~~~i~~~l~ 166 (169)
|++|+. +.++.|..+.+.+.+|+++.+.
T Consensus 82 ~~~g~~~~~~~~g~~~~~~l~~~i~~~~~ 110 (462)
T TIGR01130 82 FRNGEDSVSDYNGPRDADGIVKYMKKQSG 110 (462)
T ss_pred EeCCccceeEecCCCCHHHHHHHHHHhcC
Confidence 999988 7899999999999999998864
No 51
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=6.8e-19 Score=128.54 Aligned_cols=99 Identities=32% Similarity=0.633 Sum_probs=87.6
Q ss_pred ChhhHHHHHhc-CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEcCCce
Q 030928 66 TFSSLDDLLQK-SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKP 144 (169)
Q Consensus 66 ~~~~~~~~~~~-~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g~~ 144 (169)
++.+|+..+.. ..+.++|+|++.||++|++..|.++.++++|++ ..|++||+|+-++.+..+||...||+++|+||..
T Consensus 8 ~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~-aVFlkVdVd~c~~taa~~gV~amPTFiff~ng~k 86 (288)
T KOG0908|consen 8 SDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG-AVFLKVDVDECRGTAATNGVNAMPTFIFFRNGVK 86 (288)
T ss_pred CcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc-cEEEEEeHHHhhchhhhcCcccCceEEEEecCeE
Confidence 44567665544 468999999999999999999999999999986 8899999999999999999999999999999999
Q ss_pred eeeeeCCCCHHHHHHHHHhhhc
Q 030928 145 SDRFEGAFSKDQLIQRIENSLS 166 (169)
Q Consensus 145 ~~~~~G~~~~~~l~~~i~~~l~ 166 (169)
+.++.|. ++..|++.+.+++.
T Consensus 87 id~~qGA-d~~gLe~kv~~~~s 107 (288)
T KOG0908|consen 87 IDQIQGA-DASGLEEKVAKYAS 107 (288)
T ss_pred eeeecCC-CHHHHHHHHHHHhc
Confidence 9999987 67778888877764
No 52
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.79 E-value=2.5e-18 Score=108.03 Aligned_cols=81 Identities=28% Similarity=0.491 Sum_probs=73.8
Q ss_pred EEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEcCCceeeeeeCCCCHHHHHHH
Q 030928 81 VLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQR 160 (169)
Q Consensus 81 vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~ 160 (169)
.+..||++||++|+.+.|.+++++.+++..+.++.||.+++++++++||+.++||+++ +|+. ++.|..+.+++.++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~~--~~~G~~~~~~l~~~ 77 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGDV--EFIGAPTKEELVEA 77 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCEE--EEecCCCHHHHHHH
Confidence 4778999999999999999999999998779999999999999999999999999886 7763 78899999999999
Q ss_pred HHhhh
Q 030928 161 IENSL 165 (169)
Q Consensus 161 i~~~l 165 (169)
|+++|
T Consensus 78 l~~~~ 82 (82)
T TIGR00411 78 IKKRL 82 (82)
T ss_pred HHhhC
Confidence 98764
No 53
>PTZ00102 disulphide isomerase; Provisional
Probab=99.79 E-value=2e-18 Score=140.90 Aligned_cols=105 Identities=27% Similarity=0.580 Sum_probs=93.8
Q ss_pred eecccCChhhHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhc---CCeEEEEEeCCCchhHHHhCCCCCCcEE
Q 030928 60 VEAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALK---DKIQVVKIDTEKYPQIADTYRIEALPTF 136 (169)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~---~~v~~~~v~~d~~~~l~~~~~v~~~Pt~ 136 (169)
..+..++.++|++.+.. ++.++|+||++||++|+++.|.++++++.+. .++.|+.|||+++.++|++|+|.++||+
T Consensus 32 ~~v~~l~~~~f~~~i~~-~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~ 110 (477)
T PTZ00102 32 EHVTVLTDSTFDKFITE-NEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTI 110 (477)
T ss_pred CCcEEcchhhHHHHHhc-CCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEE
Confidence 34667788899988754 6799999999999999999999999987764 3599999999999999999999999999
Q ss_pred EEEcCCceeeeeeCCCCHHHHHHHHHhhhc
Q 030928 137 ILFKDGKPSDRFEGAFSKDQLIQRIENSLS 166 (169)
Q Consensus 137 ~~~~~g~~~~~~~G~~~~~~l~~~i~~~l~ 166 (169)
++|++|+.+ ++.|..+.+.+.+|+++++.
T Consensus 111 ~~~~~g~~~-~y~g~~~~~~l~~~l~~~~~ 139 (477)
T PTZ00102 111 KFFNKGNPV-NYSGGRTADGIVSWIKKLTG 139 (477)
T ss_pred EEEECCceE-EecCCCCHHHHHHHHHHhhC
Confidence 999998877 89999999999999998864
No 54
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.78 E-value=2.1e-18 Score=138.79 Aligned_cols=105 Identities=20% Similarity=0.383 Sum_probs=88.1
Q ss_pred eecccCChhhHHHHHh--cCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCC-eEEEEEeCCCch-hHH-HhCCCCCCc
Q 030928 60 VEAKKQTFSSLDDLLQ--KSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDK-IQVVKIDTEKYP-QIA-DTYRIEALP 134 (169)
Q Consensus 60 ~~~~~~~~~~~~~~~~--~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~-v~~~~v~~d~~~-~l~-~~~~v~~~P 134 (169)
..+..++.++|++.+. +.++++||+||++||++|+.+.|.|+++++++.++ +.|+.||+|.+. +++ ++|+|+++|
T Consensus 351 ~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~P 430 (463)
T TIGR00424 351 NNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFP 430 (463)
T ss_pred CCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccc
Confidence 3566778889999874 56889999999999999999999999999999764 899999998764 454 789999999
Q ss_pred EEEEEcCCc-eeeeee-CCCCHHHHHHHHHhh
Q 030928 135 TFILFKDGK-PSDRFE-GAFSKDQLIQRIENS 164 (169)
Q Consensus 135 t~~~~~~g~-~~~~~~-G~~~~~~l~~~i~~~ 164 (169)
|+++|++|. ....|. |..+.+.|..||+.+
T Consensus 431 Tii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 431 TILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred eEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 999998775 344566 589999999999753
No 55
>PTZ00102 disulphide isomerase; Provisional
Probab=99.78 E-value=1.9e-18 Score=141.06 Aligned_cols=106 Identities=27% Similarity=0.556 Sum_probs=94.8
Q ss_pred ecccCChhhHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC--CeEEEEEeCCCchhHHHhCCCCCCcEEEE
Q 030928 61 EAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKD--KIQVVKIDTEKYPQIADTYRIEALPTFIL 138 (169)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~--~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~ 138 (169)
.+..++.++|++.+.+.+++++|+||++||++|+.+.|.+++++..+.+ .+.++.+|++.+...+++|+++++||+++
T Consensus 358 ~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~~ 437 (477)
T PTZ00102 358 PVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTILF 437 (477)
T ss_pred CeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeEEE
Confidence 4566778899998878889999999999999999999999999998875 48899999999999999999999999999
Q ss_pred EcCCce-eeeeeCCCCHHHHHHHHHhhhc
Q 030928 139 FKDGKP-SDRFEGAFSKDQLIQRIENSLS 166 (169)
Q Consensus 139 ~~~g~~-~~~~~G~~~~~~l~~~i~~~l~ 166 (169)
|++|+. ..++.|..+.+++.++|+++..
T Consensus 438 ~~~~~~~~~~~~G~~~~~~l~~~i~~~~~ 466 (477)
T PTZ00102 438 VKAGERTPIPYEGERTVEGFKEFVNKHAT 466 (477)
T ss_pred EECCCcceeEecCcCCHHHHHHHHHHcCC
Confidence 986654 4589999999999999998864
No 56
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.78 E-value=2.9e-18 Score=124.15 Aligned_cols=100 Identities=20% Similarity=0.303 Sum_probs=83.1
Q ss_pred eecccCChhhHHHHHhcC--CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEE
Q 030928 60 VEAKKQTFSSLDDLLQKS--DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFI 137 (169)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~--~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~ 137 (169)
..+.+++..+|...+... +.+|||+||++||++|+.+.|.|++++.+|.. +.|+.||.+.. ...|++.++||++
T Consensus 82 G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~-vkFvkI~ad~~---~~~~~i~~lPTll 157 (192)
T cd02988 82 GEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPD-TKFVKIISTQC---IPNYPDKNLPTIL 157 (192)
T ss_pred CeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCC-CEEEEEEhHHh---HhhCCCCCCCEEE
Confidence 345555778888766544 35899999999999999999999999999975 99999999753 6899999999999
Q ss_pred EEcCCceeeeeeCC-------CCHHHHHHHHHh
Q 030928 138 LFKDGKPSDRFEGA-------FSKDQLIQRIEN 163 (169)
Q Consensus 138 ~~~~g~~~~~~~G~-------~~~~~l~~~i~~ 163 (169)
+|++|+.+.++.|. .+.++|+.+|.+
T Consensus 158 iyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 158 VYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred EEECCEEEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence 99999999999874 456777776653
No 57
>PLN02309 5'-adenylylsulfate reductase
Probab=99.78 E-value=3.4e-18 Score=137.52 Aligned_cols=105 Identities=22% Similarity=0.448 Sum_probs=89.8
Q ss_pred eecccCChhhHHHHHh--cCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCC-CchhHHH-hCCCCCCc
Q 030928 60 VEAKKQTFSSLDDLLQ--KSDKPVLVDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTE-KYPQIAD-TYRIEALP 134 (169)
Q Consensus 60 ~~~~~~~~~~~~~~~~--~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~d-~~~~l~~-~~~v~~~P 134 (169)
..+.+++.++|++++. +.++++||+||++||++|+.+.|.|+++++++.+ ++.|+.+|++ ++.+++. +|+|+++|
T Consensus 345 ~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~P 424 (457)
T PLN02309 345 QNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFP 424 (457)
T ss_pred CCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCceee
Confidence 3566788889998874 5688999999999999999999999999999875 4999999999 7788886 69999999
Q ss_pred EEEEEcCCc-eeeeee-CCCCHHHHHHHHHhh
Q 030928 135 TFILFKDGK-PSDRFE-GAFSKDQLIQRIENS 164 (169)
Q Consensus 135 t~~~~~~g~-~~~~~~-G~~~~~~l~~~i~~~ 164 (169)
|+++|++|. ....|. |..+.+.|.+||+.+
T Consensus 425 Til~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 425 TILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred EEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 999998665 344566 468999999999865
No 58
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.78 E-value=2.4e-18 Score=114.32 Aligned_cols=97 Identities=16% Similarity=0.291 Sum_probs=78.4
Q ss_pred ccCChhhHHHHHhcCCCcEEEEEEc--CCCh---hhhhhhHHHHHHHHHhcCCeEEEEEeCC-----CchhHHHhCCCC-
Q 030928 63 KKQTFSSLDDLLQKSDKPVLVDFYA--TWCG---PCQYMAPILNEVGAALKDKIQVVKIDTE-----KYPQIADTYRIE- 131 (169)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~vvv~f~~--~~C~---~C~~~~~~l~~~~~~~~~~v~~~~v~~d-----~~~~l~~~~~v~- 131 (169)
..++..+|++.+.. .+.++|.||+ |||+ +|+.+.|.+.+.+. .+.++.||++ ++.+||++|+|+
T Consensus 4 v~L~~~nF~~~v~~-~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~----~v~lakVd~~d~~~~~~~~L~~~y~I~~ 78 (116)
T cd03007 4 VDLDTVTFYKVIPK-FKYSLVKFDTAYPYGEKHEAFTRLAESSASATD----DLLVAEVGIKDYGEKLNMELGERYKLDK 78 (116)
T ss_pred eECChhhHHHHHhc-CCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC----ceEEEEEecccccchhhHHHHHHhCCCc
Confidence 35788899998854 6789999999 8888 66666655544443 3889999994 578899999999
Q ss_pred -CCcEEEEEcCCc--eeeeeeCC-CCHHHHHHHHHhh
Q 030928 132 -ALPTFILFKDGK--PSDRFEGA-FSKDQLIQRIENS 164 (169)
Q Consensus 132 -~~Pt~~~~~~g~--~~~~~~G~-~~~~~l~~~i~~~ 164 (169)
++||+.+|++|. ....|.|. ++.+.|.+||.+.
T Consensus 79 ~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 79 ESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 999999999885 44678996 9999999999763
No 59
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.76 E-value=1.7e-17 Score=119.88 Aligned_cols=110 Identities=20% Similarity=0.318 Sum_probs=83.2
Q ss_pred CCCcceecccCCh--hhHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCch----------
Q 030928 55 RLLPVVEAKKQTF--SSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYP---------- 122 (169)
Q Consensus 55 ~~~~~~~~~~~~~--~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~---------- 122 (169)
...|.+.+.+++. ..+.......+++++|+||++||++|+.++|.+.++.++ ++.++.|+.++++
T Consensus 43 ~~~p~f~l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~---~~~vi~v~~~~~~~~~~~~~~~~ 119 (185)
T PRK15412 43 KPVPKFRLESLENPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKEL 119 (185)
T ss_pred CCCCCcCCccCCCCCccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHHHHHHc
Confidence 3456666665552 222211223588999999999999999999999998753 4778888765432
Q ss_pred -------------hHHHhCCCCCCcEEEEEc-CCceeeeeeCCCCHHHHHHHHHhhhcc
Q 030928 123 -------------QIADTYRIEALPTFILFK-DGKPSDRFEGAFSKDQLIQRIENSLSV 167 (169)
Q Consensus 123 -------------~l~~~~~v~~~Pt~~~~~-~g~~~~~~~G~~~~~~l~~~i~~~l~~ 167 (169)
.+.+.|||.++|+.++++ +|+++.++.|..+.+++++.|+.+++.
T Consensus 120 ~~~~~~~~~D~~~~~~~~~gv~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~~ 178 (185)
T PRK15412 120 GNPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWEK 178 (185)
T ss_pred CCCCceEEEcCCccHHHhcCCCcCCeEEEECCCceEEEEEecCCCHHHHHHHHHHHHHH
Confidence 244578999999877664 999999999999999999999988853
No 60
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.76 E-value=1e-17 Score=109.67 Aligned_cols=88 Identities=23% Similarity=0.351 Sum_probs=80.2
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCC--CCcEEEEEcC--CceeeeeeCCCC
Q 030928 78 DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIE--ALPTFILFKD--GKPSDRFEGAFS 153 (169)
Q Consensus 78 ~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~--~~Pt~~~~~~--g~~~~~~~G~~~ 153 (169)
++++++.|+++||++|+.+.|.++++++++.+++.|+.||+++++++++.||+. ++|+++++++ |+......|..+
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~~ 91 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEELT 91 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCccccC
Confidence 689999999999999999999999999999999999999999999999999999 9999999987 766655556669
Q ss_pred HHHHHHHHHhhh
Q 030928 154 KDQLIQRIENSL 165 (169)
Q Consensus 154 ~~~l~~~i~~~l 165 (169)
.+.+.+||++++
T Consensus 92 ~~~l~~fi~~~~ 103 (103)
T cd02982 92 AESLEEFVEDFL 103 (103)
T ss_pred HHHHHHHHHhhC
Confidence 999999998763
No 61
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.75 E-value=1.1e-17 Score=111.95 Aligned_cols=82 Identities=20% Similarity=0.451 Sum_probs=71.0
Q ss_pred cCChhhHHHHHhcC-CCcEEEEEEc-------CCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCC-------chhHHHhC
Q 030928 64 KQTFSSLDDLLQKS-DKPVLVDFYA-------TWCGPCQYMAPILNEVGAALKDKIQVVKIDTEK-------YPQIADTY 128 (169)
Q Consensus 64 ~~~~~~~~~~~~~~-~~~vvv~f~~-------~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~-------~~~l~~~~ 128 (169)
..+.++|.+.+... +++++|+||| +||++|+.+.|.+++++.++++++.|+.||+++ +.++..+|
T Consensus 6 ~~~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~ 85 (119)
T cd02952 6 VRGYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDP 85 (119)
T ss_pred ccCHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhcc
Confidence 34667788887653 6899999999 999999999999999999999779999999976 45899999
Q ss_pred CCC-CCcEEEEEcCCcee
Q 030928 129 RIE-ALPTFILFKDGKPS 145 (169)
Q Consensus 129 ~v~-~~Pt~~~~~~g~~~ 145 (169)
+|+ ++||+++|++|+.+
T Consensus 86 ~I~~~iPT~~~~~~~~~l 103 (119)
T cd02952 86 KLTTGVPTLLRWKTPQRL 103 (119)
T ss_pred CcccCCCEEEEEcCCcee
Confidence 999 99999999877643
No 62
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.74 E-value=5e-18 Score=113.91 Aligned_cols=99 Identities=15% Similarity=0.298 Sum_probs=74.6
Q ss_pred hhHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCch-hHHHhCCCCC--CcEEEEEc-CCc
Q 030928 68 SSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYP-QIADTYRIEA--LPTFILFK-DGK 143 (169)
Q Consensus 68 ~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~-~l~~~~~v~~--~Pt~~~~~-~g~ 143 (169)
++..+.....+++++|+||++||++|+.+.|.+.+..........|+.|+++.++ ....+|++.+ +||+++++ +|+
T Consensus 9 ~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk 88 (117)
T cd02959 9 EDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGD 88 (117)
T ss_pred HHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCC
Confidence 3333444456899999999999999999999998877755444567777777654 4567899987 99999996 999
Q ss_pred eeee---eeCCCCHHHHHHHHHhhhc
Q 030928 144 PSDR---FEGAFSKDQLIQRIENSLS 166 (169)
Q Consensus 144 ~~~~---~~G~~~~~~l~~~i~~~l~ 166 (169)
++.+ ..|..+.+.+...|+.+..
T Consensus 89 ~~~~~~~~~~~~~~~~f~~~~~~~~~ 114 (117)
T cd02959 89 VHPEIINKKGNPNYKYFYSSAAQVTE 114 (117)
T ss_pred CchhhccCCCCccccccCCCHHHHHh
Confidence 9774 4566777777666666543
No 63
>PTZ00062 glutaredoxin; Provisional
Probab=99.74 E-value=2.6e-17 Score=119.78 Aligned_cols=90 Identities=9% Similarity=0.141 Sum_probs=77.4
Q ss_pred ChhhHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEcCCcee
Q 030928 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPS 145 (169)
Q Consensus 66 ~~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g~~~ 145 (169)
+.+++.+.+......++++||++||+.|+.+.|.++++++++++ +.|+.||.| |+|.++||+++|++|+++
T Consensus 5 ~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~-~~F~~V~~d--------~~V~~vPtfv~~~~g~~i 75 (204)
T PTZ00062 5 KKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPS-LEFYVVNLA--------DANNEYGVFEFYQNSQLI 75 (204)
T ss_pred CHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCC-cEEEEEccc--------cCcccceEEEEEECCEEE
Confidence 55678888765446899999999999999999999999999985 999999977 999999999999999999
Q ss_pred eeeeCCCCHHHHHHHHHhhh
Q 030928 146 DRFEGAFSKDQLIQRIENSL 165 (169)
Q Consensus 146 ~~~~G~~~~~~l~~~i~~~l 165 (169)
.++.|.. ..++..++.++.
T Consensus 76 ~r~~G~~-~~~~~~~~~~~~ 94 (204)
T PTZ00062 76 NSLEGCN-TSTLVSFIRGWA 94 (204)
T ss_pred eeeeCCC-HHHHHHHHHHHc
Confidence 9999874 666666665543
No 64
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.73 E-value=1e-16 Score=114.61 Aligned_cols=109 Identities=19% Similarity=0.369 Sum_probs=82.1
Q ss_pred CCCcceecccCChh--hHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCC-------------
Q 030928 55 RLLPVVEAKKQTFS--SLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTE------------- 119 (169)
Q Consensus 55 ~~~~~~~~~~~~~~--~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d------------- 119 (169)
...|.+.+.+.+.+ .+.......+++++|+||++||++|+.+.|.++++.++ ++.++.|+.+
T Consensus 38 ~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~~~~~~~~~~~~~~~ 114 (173)
T TIGR00385 38 KPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDYKDQSQNALKFLKEL 114 (173)
T ss_pred CCCCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEECCCChHHHHHHHHHc
Confidence 34566666655543 22211113578999999999999999999999988764 3666666543
Q ss_pred ----------CchhHHHhCCCCCCcEEEEE-cCCceeeeeeCCCCHHHHHHHHHhhhc
Q 030928 120 ----------KYPQIADTYRIEALPTFILF-KDGKPSDRFEGAFSKDQLIQRIENSLS 166 (169)
Q Consensus 120 ----------~~~~l~~~~~v~~~Pt~~~~-~~g~~~~~~~G~~~~~~l~~~i~~~l~ 166 (169)
.+..+.++|++.++|+.+++ ++|+++.++.|..+.++++++|++++.
T Consensus 115 ~~~f~~v~~D~~~~~~~~~~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 115 GNPYQAILIDPNGKLGLDLGVYGAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred CCCCceEEECCCCchHHhcCCeeCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHhh
Confidence 33356678999999976666 599999999999999999999999884
No 65
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.72 E-value=1.1e-16 Score=130.48 Aligned_cols=105 Identities=24% Similarity=0.425 Sum_probs=85.0
Q ss_pred CCcceecccCChhhHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-CeEEEEEe-----------------
Q 030928 56 LLPVVEAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKID----------------- 117 (169)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~----------------- 117 (169)
..|.+.+.+.+..+.. ...++++||+||++||++|+.++|.|+++++++++ ++.++.|.
T Consensus 37 ~lP~f~l~D~dG~~v~---lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~ 113 (521)
T PRK14018 37 TLSTLKTADNRPASVY---LKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWY 113 (521)
T ss_pred CCCCeEeecCCCceee---ccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHH
Confidence 4566666666665432 23689999999999999999999999999999873 46665553
Q ss_pred -----------CCCchhHHHhCCCCCCcEEEEE-cCCceeeeeeCCCCHHHHHHHHHh
Q 030928 118 -----------TEKYPQIADTYRIEALPTFILF-KDGKPSDRFEGAFSKDQLIQRIEN 163 (169)
Q Consensus 118 -----------~d~~~~l~~~~~v~~~Pt~~~~-~~g~~~~~~~G~~~~~~l~~~i~~ 163 (169)
.|.+.++++.|+|.++|+++++ ++|+++.++.|..+.++++++|+.
T Consensus 114 ~~~~y~~~pV~~D~~~~lak~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~ 171 (521)
T PRK14018 114 AGLDYPKLPVLTDNGGTLAQSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRN 171 (521)
T ss_pred HhCCCcccceeccccHHHHHHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHH
Confidence 3455678899999999998766 599999999999999999999984
No 66
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.71 E-value=3e-17 Score=109.11 Aligned_cols=86 Identities=29% Similarity=0.582 Sum_probs=66.5
Q ss_pred cCCCcEEEEEEcCCChhhhhhhHHHHH---HHHHhcCCeEEEEEeCCCc--------------------hhHHHhCCCCC
Q 030928 76 KSDKPVLVDFYATWCGPCQYMAPILNE---VGAALKDKIQVVKIDTEKY--------------------PQIADTYRIEA 132 (169)
Q Consensus 76 ~~~~~vvv~f~~~~C~~C~~~~~~l~~---~~~~~~~~v~~~~v~~d~~--------------------~~l~~~~~v~~ 132 (169)
.++++++++||++||++|+.+.+.+.+ +...+.+++.++.++++.. .++.++|||.+
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g 82 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG 82 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence 357899999999999999999998875 4444555678888887653 35888999999
Q ss_pred CcEEEEEc-CCceeeeeeCCCCHHHHHHHH
Q 030928 133 LPTFILFK-DGKPSDRFEGAFSKDQLIQRI 161 (169)
Q Consensus 133 ~Pt~~~~~-~g~~~~~~~G~~~~~~l~~~i 161 (169)
+||+++++ +|+++.++.|..+.+++.++|
T Consensus 83 tPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 83 TPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp SSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred cCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 99999996 899999999999999998875
No 67
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.71 E-value=9.4e-17 Score=118.61 Aligned_cols=89 Identities=24% Similarity=0.413 Sum_probs=77.5
Q ss_pred CCcEEEEEEc---CCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCCchhHHHhCCCCCCcEEEEEcCCcee-eeeeCCC
Q 030928 78 DKPVLVDFYA---TWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPS-DRFEGAF 152 (169)
Q Consensus 78 ~~~vvv~f~~---~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g~~~-~~~~G~~ 152 (169)
+...++.|++ +||++|+.+.|.+++++.++++ .+.++.+|.+++++++++|+|.++||+++|++|+.+ .++.|..
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~~ 98 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGIP 98 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeecC
Confidence 4456777888 9999999999999999999864 255677777799999999999999999999999987 4899999
Q ss_pred CHHHHHHHHHhhhc
Q 030928 153 SKDQLIQRIENSLS 166 (169)
Q Consensus 153 ~~~~l~~~i~~~l~ 166 (169)
+.+++.++|+.++.
T Consensus 99 ~~~~l~~~i~~~~~ 112 (215)
T TIGR02187 99 AGYEFAALIEDIVR 112 (215)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998864
No 68
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.70 E-value=2.9e-16 Score=109.82 Aligned_cols=86 Identities=23% Similarity=0.458 Sum_probs=68.4
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCc------------hhHH-HhC---CCCCCcEEEEEc-
Q 030928 78 DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKY------------PQIA-DTY---RIEALPTFILFK- 140 (169)
Q Consensus 78 ~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~------------~~l~-~~~---~v~~~Pt~~~~~- 140 (169)
++..+|+||++||++|++++|.+++++++++ +.++.|+.|+. .+.. ..| ++.++||.++++
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~ 127 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNV 127 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeC
Confidence 5678999999999999999999999999984 55656665542 2333 345 889999998885
Q ss_pred CCce-eeeeeCCCCHHHHHHHHHhhh
Q 030928 141 DGKP-SDRFEGAFSKDQLIQRIENSL 165 (169)
Q Consensus 141 ~g~~-~~~~~G~~~~~~l~~~i~~~l 165 (169)
+|++ ..++.|..+.+++++.|+++|
T Consensus 128 ~G~~i~~~~~G~~s~~~l~~~I~~ll 153 (153)
T TIGR02738 128 NTRKAYPVLQGAVDEAELANRMDEIL 153 (153)
T ss_pred CCCEEEEEeecccCHHHHHHHHHHhC
Confidence 6665 557899999999999998765
No 69
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.69 E-value=2.1e-16 Score=128.20 Aligned_cols=104 Identities=27% Similarity=0.577 Sum_probs=90.9
Q ss_pred ecccCChhhHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC---CeEEEEEeCCCchhHHHhCCCCCCcEEE
Q 030928 61 EAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKD---KIQVVKIDTEKYPQIADTYRIEALPTFI 137 (169)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~---~v~~~~v~~d~~~~l~~~~~v~~~Pt~~ 137 (169)
.+..+...+|.+.+.+.++.++|+||++||++|+.+.|.++++++.+.+ ++.|+.+|++.+. +.. ++|.++||++
T Consensus 347 ~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-~~~-~~i~~~Pt~~ 424 (462)
T TIGR01130 347 PVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-VPP-FEVEGFPTIK 424 (462)
T ss_pred ccEEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-cCC-CCccccCEEE
Confidence 4556778899999877889999999999999999999999999999987 6999999999864 444 9999999999
Q ss_pred EEcCCce--eeeeeCCCCHHHHHHHHHhhhc
Q 030928 138 LFKDGKP--SDRFEGAFSKDQLIQRIENSLS 166 (169)
Q Consensus 138 ~~~~g~~--~~~~~G~~~~~~l~~~i~~~l~ 166 (169)
+|++|.. ..++.|..+.+.+.++|++...
T Consensus 425 ~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~ 455 (462)
T TIGR01130 425 FVPAGKKSEPVPYDGDRTLEDFSKFIAKHAT 455 (462)
T ss_pred EEeCCCCcCceEecCcCCHHHHHHHHHhcCC
Confidence 9987765 3678899999999999988764
No 70
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.68 E-value=4.3e-16 Score=105.81 Aligned_cols=79 Identities=20% Similarity=0.477 Sum_probs=65.8
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEe-----------------------CCCchhHHHhCCCCCC
Q 030928 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKID-----------------------TEKYPQIADTYRIEAL 133 (169)
Q Consensus 77 ~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~-----------------------~d~~~~l~~~~~v~~~ 133 (169)
.+++++|+||++||++|+.+.|.++++.++++ +.++.|+ +|.+..+++.|++.++
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~ 101 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR--VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGV 101 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC--cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCC
Confidence 47899999999999999999999999988762 6666665 3445578888999999
Q ss_pred cEEEEE-cCCceeeeeeCCCCHHHH
Q 030928 134 PTFILF-KDGKPSDRFEGAFSKDQL 157 (169)
Q Consensus 134 Pt~~~~-~~g~~~~~~~G~~~~~~l 157 (169)
|+.+++ ++|+++.++.|..+.+.+
T Consensus 102 P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 102 PETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred CeEEEECCCceEEEEEeccCChHhc
Confidence 976666 599999999999988764
No 71
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.68 E-value=7.2e-16 Score=113.91 Aligned_cols=82 Identities=22% Similarity=0.428 Sum_probs=72.4
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEcCCceeeeeeCCCCHHHH
Q 030928 78 DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSDRFEGAFSKDQL 157 (169)
Q Consensus 78 ~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l 157 (169)
+..+++.||++||++|+.+.+.+++++.+++ ++.+..+|.+++++++++|+|.++||++++++|+. +.|..+.+++
T Consensus 133 ~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~-~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~~---~~G~~~~~~l 208 (215)
T TIGR02187 133 EPVRIEVFVTPTCPYCPYAVLMAHKFALAND-KILGEMIEANENPDLAEKYGVMSVPKIVINKGVEE---FVGAYPEEQF 208 (215)
T ss_pred CCcEEEEEECCCCCCcHHHHHHHHHHHHhcC-ceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCEE---EECCCCHHHH
Confidence 4445555999999999999999999998864 59999999999999999999999999999988763 8899999999
Q ss_pred HHHHHh
Q 030928 158 IQRIEN 163 (169)
Q Consensus 158 ~~~i~~ 163 (169)
.++|.+
T Consensus 209 ~~~l~~ 214 (215)
T TIGR02187 209 LEYILS 214 (215)
T ss_pred HHHHHh
Confidence 999875
No 72
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.68 E-value=1.4e-15 Score=108.45 Aligned_cols=110 Identities=25% Similarity=0.500 Sum_probs=88.7
Q ss_pred cCCCcceecccCChhhHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC------------
Q 030928 54 RRLLPVVEAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEK------------ 120 (169)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~d~------------ 120 (169)
+...|...+.+.+.+.+.-. ...+++++|+||++||+.|+...+.+.++.+++.+ ++.++.|++|.
T Consensus 38 g~~~p~~~~~~~~g~~~~l~-~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~ 116 (173)
T PRK03147 38 GKEAPNFVLTDLEGKKIELK-DLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRY 116 (173)
T ss_pred CCCCCCcEeecCCCCEEeHH-HcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHh
Confidence 34455666666666554322 23478999999999999999999999999999876 38888888653
Q ss_pred ----------chhHHHhCCCCCCcEEEEEc-CCceeeeeeCCCCHHHHHHHHHhh
Q 030928 121 ----------YPQIADTYRIEALPTFILFK-DGKPSDRFEGAFSKDQLIQRIENS 164 (169)
Q Consensus 121 ----------~~~l~~~~~v~~~Pt~~~~~-~g~~~~~~~G~~~~~~l~~~i~~~ 164 (169)
+.++++.||+.++|++++++ +|+++..+.|..+.+++.++++++
T Consensus 117 ~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 117 GLTFPVAIDKGRQVIDAYGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred CCCceEEECCcchHHHHcCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 45778899999999988885 999999999999999999999865
No 73
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.67 E-value=6.3e-16 Score=128.54 Aligned_cols=99 Identities=26% Similarity=0.526 Sum_probs=82.5
Q ss_pred ChhhHHHHHh---cCCCcEEEEEEcCCChhhhhhhHHH---HHHHHHhcCCeEEEEEeCCCc----hhHHHhCCCCCCcE
Q 030928 66 TFSSLDDLLQ---KSDKPVLVDFYATWCGPCQYMAPIL---NEVGAALKDKIQVVKIDTEKY----PQIADTYRIEALPT 135 (169)
Q Consensus 66 ~~~~~~~~~~---~~~~~vvv~f~~~~C~~C~~~~~~l---~~~~~~~~~~v~~~~v~~d~~----~~l~~~~~v~~~Pt 135 (169)
+.+++++.+. ..+|+++|+||++||++|+.+.+.+ +++.+++++ +.++.+|.+++ ++++++|+|.++||
T Consensus 459 s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~-~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt 537 (571)
T PRK00293 459 TVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALAD-TVLLQADVTANNAEDVALLKHYNVLGLPT 537 (571)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcC-CEEEEEECCCCChhhHHHHHHcCCCCCCE
Confidence 4556666554 3478999999999999999998875 677777764 88999998753 68899999999999
Q ss_pred EEEEc-CCcee--eeeeCCCCHHHHHHHHHhhh
Q 030928 136 FILFK-DGKPS--DRFEGAFSKDQLIQRIENSL 165 (169)
Q Consensus 136 ~~~~~-~g~~~--~~~~G~~~~~~l~~~i~~~l 165 (169)
+++|+ +|+++ .++.|..+.+++.++++++.
T Consensus 538 ~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 538 ILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred EEEECCCCCCcccccccCCCCHHHHHHHHHHhc
Confidence 99997 88884 68899999999999998764
No 74
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.8e-16 Score=127.30 Aligned_cols=101 Identities=30% Similarity=0.619 Sum_probs=87.1
Q ss_pred cccCChhhHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC--CeEEEEEeCCCchhHHHhCCCCCCcEEEEE
Q 030928 62 AKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKD--KIQVVKIDTEKYPQIADTYRIEALPTFILF 139 (169)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~--~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~ 139 (169)
+..+-.++|++++.+.++-|+|.||||||+||+++.|.|+++++.+++ ++.++.+|...|. ....++.++|||+++
T Consensus 368 VkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd--~~~~~~~~fPTI~~~ 445 (493)
T KOG0190|consen 368 VKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATAND--VPSLKVDGFPTILFF 445 (493)
T ss_pred eEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEecccccc--CccccccccceEEEe
Confidence 556677899999999999999999999999999999999999999986 4889999988874 345677889999999
Q ss_pred cCCc--eeeeeeCCCCHHHHHHHHHhh
Q 030928 140 KDGK--PSDRFEGAFSKDQLIQRIENS 164 (169)
Q Consensus 140 ~~g~--~~~~~~G~~~~~~l~~~i~~~ 164 (169)
..|. ....|.|.++.+++..+|++.
T Consensus 446 pag~k~~pv~y~g~R~le~~~~fi~~~ 472 (493)
T KOG0190|consen 446 PAGHKSNPVIYNGDRTLEDLKKFIKKS 472 (493)
T ss_pred cCCCCCCCcccCCCcchHHHHhhhccC
Confidence 8554 456789999999999999764
No 75
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.66 E-value=3.5e-16 Score=117.43 Aligned_cols=99 Identities=35% Similarity=0.640 Sum_probs=87.6
Q ss_pred hhhHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHh----c-CCeEEEEEeCCCchhHHHhCCCCCCcEEEEEcC
Q 030928 67 FSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAAL----K-DKIQVVKIDTEKYPQIADTYRIEALPTFILFKD 141 (169)
Q Consensus 67 ~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~----~-~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~ 141 (169)
.++++.++.. ...|+|.|||+||+..+.++|.+++.+..+ + +++.++.|||+.+..++.+|.|..+||+-+|+|
T Consensus 3 ~~N~~~il~s-~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrn 81 (375)
T KOG0912|consen 3 SENIDSILDS-NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFRN 81 (375)
T ss_pred cccHHHhhcc-ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeeec
Confidence 3456666644 789999999999999999999999887765 3 469999999999999999999999999999999
Q ss_pred Cceee-eeeCCCCHHHHHHHHHhhhc
Q 030928 142 GKPSD-RFEGAFSKDQLIQRIENSLS 166 (169)
Q Consensus 142 g~~~~-~~~G~~~~~~l~~~i~~~l~ 166 (169)
|..+. .|.|.+..+.+.++|+..+.
T Consensus 82 G~~~~rEYRg~RsVeaL~efi~kq~s 107 (375)
T KOG0912|consen 82 GEMMKREYRGQRSVEALIEFIEKQLS 107 (375)
T ss_pred cchhhhhhccchhHHHHHHHHHHHhc
Confidence 99987 67899999999999988765
No 76
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.66 E-value=1.3e-15 Score=94.53 Aligned_cols=73 Identities=19% Similarity=0.257 Sum_probs=61.2
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEcCCceeeeeeCC-CCHHHHHHH
Q 030928 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSDRFEGA-FSKDQLIQR 160 (169)
Q Consensus 82 vv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~G~-~~~~~l~~~ 160 (169)
.|.||++||++|+.+.|.+++++++++..+.++.|| +.+.+.+||+.++|++++ ||+++ +.|. .+.+++.++
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~~~--~~G~~~~~~~l~~~ 74 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGVTATPGVAV--DGELV--IMGKIPSKEEIKEI 74 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCCcCCEEEE--CCEEE--EEeccCCHHHHHHH
Confidence 378999999999999999999999998778887777 244578899999999999 89877 6675 565777776
Q ss_pred H
Q 030928 161 I 161 (169)
Q Consensus 161 i 161 (169)
+
T Consensus 75 l 75 (76)
T TIGR00412 75 L 75 (76)
T ss_pred h
Confidence 5
No 77
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.66 E-value=2.2e-15 Score=101.73 Aligned_cols=98 Identities=19% Similarity=0.279 Sum_probs=73.2
Q ss_pred ChhhHHHHHhcCCCcEEEEEEcCCChhhhhhhHHH---HHHHHHhcCCeEEEEEeCCCchhHHH--------hCCCCCCc
Q 030928 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPIL---NEVGAALKDKIQVVKIDTEKYPQIAD--------TYRIEALP 134 (169)
Q Consensus 66 ~~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l---~~~~~~~~~~v~~~~v~~d~~~~l~~--------~~~v~~~P 134 (169)
+.+.+.+.. ..+|+++|+|+++||++|+.+.+.. .++...+.+++.++.+|.++.+++.+ .||+.|+|
T Consensus 4 ~~eal~~Ak-~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~P 82 (124)
T cd02955 4 GEEAFEKAR-REDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWP 82 (124)
T ss_pred CHHHHHHHH-HcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCC
Confidence 445555554 5588999999999999999998733 46777666579999999999887765 36899999
Q ss_pred EEEEEc-CCceeeeeeCC-----CCHHHHHHHHHhh
Q 030928 135 TFILFK-DGKPSDRFEGA-----FSKDQLIQRIENS 164 (169)
Q Consensus 135 t~~~~~-~g~~~~~~~G~-----~~~~~l~~~i~~~ 164 (169)
++++++ +|+++....+. .+...+..+++++
T Consensus 83 t~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (124)
T cd02955 83 LNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKI 118 (124)
T ss_pred EEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHH
Confidence 999996 89998766544 3334555555544
No 78
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=9.5e-16 Score=122.25 Aligned_cols=101 Identities=32% Similarity=0.666 Sum_probs=89.9
Q ss_pred hhhHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEcCCceee
Q 030928 67 FSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSD 146 (169)
Q Consensus 67 ~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~ 146 (169)
...+.......+++++|+||++||++|+.+.|.+.++++.+.+.+.++.||++++.++|++|+|+++||+.+|..|....
T Consensus 36 ~~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~~~~~ 115 (383)
T KOG0191|consen 36 LDSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPGKKPI 115 (383)
T ss_pred ccccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEcCCCcee
Confidence 34555555567889999999999999999999999999999999999999999999999999999999999999886677
Q ss_pred eeeCCCCHHHHHHHHHhhhcc
Q 030928 147 RFEGAFSKDQLIQRIENSLSV 167 (169)
Q Consensus 147 ~~~G~~~~~~l~~~i~~~l~~ 167 (169)
.+.|..+.+.+.+++...+..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~ 136 (383)
T KOG0191|consen 116 DYSGPRNAESLAEFLIKELEP 136 (383)
T ss_pred eccCcccHHHHHHHHHHhhcc
Confidence 888999999999998877653
No 79
>PHA02125 thioredoxin-like protein
Probab=99.65 E-value=1.9e-15 Score=93.59 Aligned_cols=71 Identities=28% Similarity=0.593 Sum_probs=59.5
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEcCCceeeeeeCCC-CHHHHHHH
Q 030928 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSDRFEGAF-SKDQLIQR 160 (169)
Q Consensus 82 vv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~G~~-~~~~l~~~ 160 (169)
+++||++||++|+.+.|.|+++. +.++.||.+++++++++|+|.++||++ +|+.+.++.|.. +..+|++.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~~~~~l~~~ 72 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGVPRNVAELKEK 72 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCCCCcHHHHHHH
Confidence 78999999999999999987652 568899999999999999999999987 688888888863 44666655
Q ss_pred H
Q 030928 161 I 161 (169)
Q Consensus 161 i 161 (169)
+
T Consensus 73 ~ 73 (75)
T PHA02125 73 L 73 (75)
T ss_pred h
Confidence 4
No 80
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.64 E-value=1.8e-15 Score=104.80 Aligned_cols=71 Identities=25% Similarity=0.475 Sum_probs=59.4
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC--------CeEEEEEeCCCch-------------------------h
Q 030928 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKD--------KIQVVKIDTEKYP-------------------------Q 123 (169)
Q Consensus 77 ~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~--------~v~~~~v~~d~~~-------------------------~ 123 (169)
.+++++|+|||+||++|+.++|.|.++++++.+ ++.++.|+.|++. .
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 579999999999999999999999998876543 4888888876432 4
Q ss_pred HHHhCCCCCCcEEEEEc-CCceeee
Q 030928 124 IADTYRIEALPTFILFK-DGKPSDR 147 (169)
Q Consensus 124 l~~~~~v~~~Pt~~~~~-~g~~~~~ 147 (169)
++++|+|.++|+.++++ +|+++.+
T Consensus 104 l~~~y~v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCcEEee
Confidence 66789999999999996 8998765
No 81
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.64 E-value=7e-15 Score=99.54 Aligned_cols=102 Identities=20% Similarity=0.249 Sum_probs=86.1
Q ss_pred ChhhHHHHHhcCCCcEEEEEEcC--CChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCCchhHHHhCCCCCCcEEEEEcCC
Q 030928 66 TFSSLDDLLQKSDKPVLVDFYAT--WCGPCQYMAPILNEVGAALKD-KIQVVKIDTEKYPQIADTYRIEALPTFILFKDG 142 (169)
Q Consensus 66 ~~~~~~~~~~~~~~~vvv~f~~~--~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g 142 (169)
+..++++++...+ ..+++|-.+ -++.+....-.|++++++|.+ ++.|+.||+|++++++.+|||.++||+++|++|
T Consensus 23 ~~~~~~~~~~~~~-~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~FkdG 101 (132)
T PRK11509 23 SESRLDDWLTQAP-DGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGG 101 (132)
T ss_pred ccccHHHHHhCCC-cEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEEECC
Confidence 4456667764433 455544433 478888888899999999984 599999999999999999999999999999999
Q ss_pred ceeeeeeCCCCHHHHHHHHHhhhccC
Q 030928 143 KPSDRFEGAFSKDQLIQRIENSLSVK 168 (169)
Q Consensus 143 ~~~~~~~G~~~~~~l~~~i~~~l~~~ 168 (169)
+.+.++.|..+.+++.++|++++...
T Consensus 102 k~v~~i~G~~~k~~l~~~I~~~L~~~ 127 (132)
T PRK11509 102 NYRGVLNGIHPWAELINLMRGLVEPQ 127 (132)
T ss_pred EEEEEEeCcCCHHHHHHHHHHHhcCc
Confidence 99999999999999999999998653
No 82
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.63 E-value=5.3e-16 Score=116.59 Aligned_cols=86 Identities=38% Similarity=0.765 Sum_probs=76.5
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC---CeEEEEEeCCCchhHHHhCCCCCCcEEEEEcCCceeeeeeCCCC
Q 030928 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKD---KIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSDRFEGAFS 153 (169)
Q Consensus 77 ~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~---~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~ 153 (169)
.+..++|+||+|||++|+++.|.|.++-.++++ -+++.++|+...+.++.++||+|+||+.++++|-.+ .|.|..+
T Consensus 42 dddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a~-dYRG~R~ 120 (468)
T KOG4277|consen 42 DDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHAI-DYRGGRE 120 (468)
T ss_pred cCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCeee-ecCCCcc
Confidence 367999999999999999999999999888775 388899999999999999999999999999877654 6889999
Q ss_pred HHHHHHHHHh
Q 030928 154 KDQLIQRIEN 163 (169)
Q Consensus 154 ~~~l~~~i~~ 163 (169)
.+.+..|-.+
T Consensus 121 Kd~iieFAhR 130 (468)
T KOG4277|consen 121 KDAIIEFAHR 130 (468)
T ss_pred HHHHHHHHHh
Confidence 9999988754
No 83
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.63 E-value=7e-15 Score=111.90 Aligned_cols=88 Identities=24% Similarity=0.331 Sum_probs=72.9
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCC-----------chhHHHhCCCCCCcEEEEEcC-Cce
Q 030928 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEK-----------YPQIADTYRIEALPTFILFKD-GKP 144 (169)
Q Consensus 77 ~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~-----------~~~l~~~~~v~~~Pt~~~~~~-g~~ 144 (169)
.++++||+||++||++|+.+.|.|++++++++ +.++.|+.|. +.+++++|||.++|++++++. |+.
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~ 242 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQ 242 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCE
Confidence 47899999999999999999999999999985 5566666554 357899999999999999974 544
Q ss_pred e-eeeeCCCCHHHHHHHHHhhhc
Q 030928 145 S-DRFEGAFSKDQLIQRIENSLS 166 (169)
Q Consensus 145 ~-~~~~G~~~~~~l~~~i~~~l~ 166 (169)
+ ....|..+.++|.+.|..+..
T Consensus 243 v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 243 FTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred EEEEEeCCCCHHHHHHHHHHHhc
Confidence 4 455699999999999877643
No 84
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.63 E-value=3.9e-15 Score=131.06 Aligned_cols=90 Identities=23% Similarity=0.390 Sum_probs=78.8
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCC-eEEEEEeC---------------------------CCchhHHHhC
Q 030928 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDK-IQVVKIDT---------------------------EKYPQIADTY 128 (169)
Q Consensus 77 ~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~-v~~~~v~~---------------------------d~~~~l~~~~ 128 (169)
.++++||+||++||++|+.+.|.|+++.++|+++ +.++.|.+ |.+.++.++|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 5899999999999999999999999999999864 77877742 2234577889
Q ss_pred CCCCCcEEEEE-cCCceeeeeeCCCCHHHHHHHHHhhhc
Q 030928 129 RIEALPTFILF-KDGKPSDRFEGAFSKDQLIQRIENSLS 166 (169)
Q Consensus 129 ~v~~~Pt~~~~-~~g~~~~~~~G~~~~~~l~~~i~~~l~ 166 (169)
+|.++|+++++ ++|+++.++.|....+++.++|++++.
T Consensus 499 ~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 499 GVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred CCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHH
Confidence 99999999999 499999999999999999999998875
No 85
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.62 E-value=1e-14 Score=108.52 Aligned_cols=113 Identities=19% Similarity=0.187 Sum_probs=84.2
Q ss_pred ccCCCcceecccCChhhHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC--------c--
Q 030928 53 KRRLLPVVEAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEK--------Y-- 121 (169)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~d~--------~-- 121 (169)
.+...|.+.+.+++.+.+. +-+..++++||+||++||+.|+..+|.|+++.+++++ ++.++.|+++. .
T Consensus 75 ~g~~aPdF~l~d~~G~~vs-Lsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~e 153 (236)
T PLN02399 75 TEKSVHDFTVKDIDGKDVA-LSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPE 153 (236)
T ss_pred cCCCCCceEEECCCCCEEe-HHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHH
Confidence 4455677777766665432 1122478999999999999999999999999999986 48899988641 1
Q ss_pred -hhHH-HhCC----------------------------------CCCCcEEEEE-cCCceeeeeeCCCCHHHHHHHHHhh
Q 030928 122 -PQIA-DTYR----------------------------------IEALPTFILF-KDGKPSDRFEGAFSKDQLIQRIENS 164 (169)
Q Consensus 122 -~~l~-~~~~----------------------------------v~~~Pt~~~~-~~g~~~~~~~G~~~~~~l~~~i~~~ 164 (169)
.+++ ++++ +...|+.+++ ++|+++.++.|..+.+++++.|+++
T Consensus 154 i~~f~~~~~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~l 233 (236)
T PLN02399 154 IKQFACTRFKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKL 233 (236)
T ss_pred HHHHHHHhcCCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHH
Confidence 1222 2221 1234777777 5999999999999999999999999
Q ss_pred hc
Q 030928 165 LS 166 (169)
Q Consensus 165 l~ 166 (169)
|+
T Consensus 234 L~ 235 (236)
T PLN02399 234 LA 235 (236)
T ss_pred hc
Confidence 85
No 86
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.61 E-value=7.7e-15 Score=94.66 Aligned_cols=67 Identities=36% Similarity=0.753 Sum_probs=55.9
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHHHhc--CCeEEEEEeCCCch-------------------------hHHHhCCC
Q 030928 78 DKPVLVDFYATWCGPCQYMAPILNEVGAALK--DKIQVVKIDTEKYP-------------------------QIADTYRI 130 (169)
Q Consensus 78 ~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~--~~v~~~~v~~d~~~-------------------------~l~~~~~v 130 (169)
||+++|+||++||++|++..|.+.++.++++ +++.++.|+.|+.. .+.+.|+|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 5899999999999999999999999999999 67999999877642 56677999
Q ss_pred CCCcEEEEEc-CCce
Q 030928 131 EALPTFILFK-DGKP 144 (169)
Q Consensus 131 ~~~Pt~~~~~-~g~~ 144 (169)
.++|++++++ +|++
T Consensus 81 ~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 81 NGIPTLVLLDPDGKI 95 (95)
T ss_dssp TSSSEEEEEETTSBE
T ss_pred CcCCEEEEECCCCCC
Confidence 9999999886 7764
No 87
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.59 E-value=1e-14 Score=106.40 Aligned_cols=113 Identities=17% Similarity=0.250 Sum_probs=81.1
Q ss_pred CCCcceecccCChhhHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC-------c----h
Q 030928 55 RLLPVVEAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEK-------Y----P 122 (169)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~d~-------~----~ 122 (169)
...|.+.+.+.+.+.+. +....++++||+||++||++|+..+|.|+++.+++.+ ++.++.|++++ . .
T Consensus 17 ~~~pdf~l~d~~G~~vs-L~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~ 95 (199)
T PTZ00056 17 KSIYDYTVKTLEGTTVP-MSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIR 95 (199)
T ss_pred CCCCceEEECCCCCEEe-HHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHH
Confidence 34556666555554322 1122478999999999999999999999999999986 48999998641 1 2
Q ss_pred hHHHhCCC------------------------------------CCCc---E-EEEEcCCceeeeeeCCCCHHHHHHHHH
Q 030928 123 QIADTYRI------------------------------------EALP---T-FILFKDGKPSDRFEGAFSKDQLIQRIE 162 (169)
Q Consensus 123 ~l~~~~~v------------------------------------~~~P---t-~~~~~~g~~~~~~~G~~~~~~l~~~i~ 162 (169)
+.++++++ .++| + +++-++|+++.++.|..+.+++++.|+
T Consensus 96 ~f~~~~~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~ 175 (199)
T PTZ00056 96 KFNDKNKIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIA 175 (199)
T ss_pred HHHHHcCCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHH
Confidence 23333332 1223 3 444469999999999999999999999
Q ss_pred hhhccC
Q 030928 163 NSLSVK 168 (169)
Q Consensus 163 ~~l~~~ 168 (169)
++++.+
T Consensus 176 ~ll~~~ 181 (199)
T PTZ00056 176 ELLGVK 181 (199)
T ss_pred HHHHHH
Confidence 998754
No 88
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.59 E-value=9.5e-15 Score=99.97 Aligned_cols=71 Identities=28% Similarity=0.636 Sum_probs=59.2
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC---CeEEEEEeCCCch-------------------------hHHHhC
Q 030928 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKD---KIQVVKIDTEKYP-------------------------QIADTY 128 (169)
Q Consensus 77 ~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~---~v~~~~v~~d~~~-------------------------~l~~~~ 128 (169)
.+++++|+||++||++|+.++|.++++++++++ ++.++.|+.|... .+.+.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 479999999999999999999999999988875 4777777776532 455679
Q ss_pred CCCCCcEEEEEc-CCceeee
Q 030928 129 RIEALPTFILFK-DGKPSDR 147 (169)
Q Consensus 129 ~v~~~Pt~~~~~-~g~~~~~ 147 (169)
+|.++|++++++ +|+++.+
T Consensus 96 ~v~~iPt~~lid~~G~iv~~ 115 (132)
T cd02964 96 KVEGIPTLVVLKPDGDVVTT 115 (132)
T ss_pred CCCCCCEEEEECCCCCEEch
Confidence 999999999996 8887754
No 89
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.59 E-value=1.1e-14 Score=99.40 Aligned_cols=71 Identities=32% Similarity=0.650 Sum_probs=59.5
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC---CeEEEEEeCCCc------------------------hhHHHhCC
Q 030928 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKD---KIQVVKIDTEKY------------------------PQIADTYR 129 (169)
Q Consensus 77 ~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~---~v~~~~v~~d~~------------------------~~l~~~~~ 129 (169)
.+++++|+||++||++|+.+.|.+.++.+++.+ ++.++.|+.|.. ..++++|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 478999999999999999999999999888753 477777776643 35678899
Q ss_pred CCCCcEEEEEc-CCceeee
Q 030928 130 IEALPTFILFK-DGKPSDR 147 (169)
Q Consensus 130 v~~~Pt~~~~~-~g~~~~~ 147 (169)
|.++|++++++ +|+++.+
T Consensus 97 v~~~P~~~lid~~G~i~~~ 115 (131)
T cd03009 97 IEGIPTLIILDADGEVVTT 115 (131)
T ss_pred CCCCCEEEEECCCCCEEcc
Confidence 99999999996 8987755
No 90
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.59 E-value=2.5e-14 Score=102.01 Aligned_cols=84 Identities=18% Similarity=0.330 Sum_probs=70.0
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCc-------------hhHHHhCCC--CCCcEEEEEc-CCcee
Q 030928 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKY-------------PQIADTYRI--EALPTFILFK-DGKPS 145 (169)
Q Consensus 82 vv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~-------------~~l~~~~~v--~~~Pt~~~~~-~g~~~ 145 (169)
+|+||++||++|++++|.+++++++++ +.++.|+.|+. ..+.+.||+ .++|+.++++ +|++.
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~ 150 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEA 150 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEE
Confidence 778999999999999999999999984 67777765532 236678995 6999988885 89885
Q ss_pred -eeeeCCCCHHHHHHHHHhhhcc
Q 030928 146 -DRFEGAFSKDQLIQRIENSLSV 167 (169)
Q Consensus 146 -~~~~G~~~~~~l~~~i~~~l~~ 167 (169)
..+.|..+.+++++.|+++++.
T Consensus 151 ~~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 151 LPLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred EEEEECCCCHHHHHHHHHHHHhh
Confidence 5799999999999999998864
No 91
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.58 E-value=2.7e-14 Score=96.26 Aligned_cols=82 Identities=28% Similarity=0.502 Sum_probs=65.6
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEe---------------------CCCchhHHHhCCCCCCcE
Q 030928 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKID---------------------TEKYPQIADTYRIEALPT 135 (169)
Q Consensus 77 ~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~---------------------~d~~~~l~~~~~v~~~Pt 135 (169)
.+++++|+||++||++|+.+.|.+.++++++. +..+.++ .|.+.+++++|+|.++|+
T Consensus 19 ~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~ 96 (123)
T cd03011 19 SGKPVLVYFWATWCPVCRFTSPTVNQLAADYP--VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTPA 96 (123)
T ss_pred CCCEEEEEEECCcChhhhhhChHHHHHHhhCC--EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcccE
Confidence 46899999999999999999999999987732 2222222 234567999999999999
Q ss_pred EEEEcCCceeeeeeCCCCHHHHHHH
Q 030928 136 FILFKDGKPSDRFEGAFSKDQLIQR 160 (169)
Q Consensus 136 ~~~~~~g~~~~~~~G~~~~~~l~~~ 160 (169)
++++++|.+..++.|..+.++|.+.
T Consensus 97 ~~vid~~gi~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 97 IVIVDPGGIVFVTTGVTSEWGLRLR 121 (123)
T ss_pred EEEEcCCCeEEEEeccCCHHHHHhh
Confidence 9999744488899999999998764
No 92
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.58 E-value=1.6e-14 Score=87.35 Aligned_cols=62 Identities=24% Similarity=0.481 Sum_probs=55.2
Q ss_pred EEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEcCCcee
Q 030928 81 VLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPS 145 (169)
Q Consensus 81 vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g~~~ 145 (169)
-++.|+++||++|+.+.+.+++++..++ ++.+..+|.+++++++++||+.++|++++ +|+.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~-~i~~~~id~~~~~~l~~~~~i~~vPti~i--~~~~~ 63 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNP-NISAEMIDAAEFPDLADEYGVMSVPAIVI--NGKVE 63 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCC-ceEEEEEEcccCHhHHHHcCCcccCEEEE--CCEEE
Confidence 4778999999999999999999987754 59999999999999999999999999877 67644
No 93
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.57 E-value=7.9e-14 Score=93.10 Aligned_cols=96 Identities=13% Similarity=0.215 Sum_probs=79.3
Q ss_pred HHHHhcCCCcEEEEEEcCCChhhhhhhHH-H--HHHHHHhcCCeEEEEEeCC--CchhHHHhCCCCCCcEEEEEc--CCc
Q 030928 71 DDLLQKSDKPVLVDFYATWCGPCQYMAPI-L--NEVGAALKDKIQVVKIDTE--KYPQIADTYRIEALPTFILFK--DGK 143 (169)
Q Consensus 71 ~~~~~~~~~~vvv~f~~~~C~~C~~~~~~-l--~~~~~~~~~~v~~~~v~~d--~~~~l~~~~~v~~~Pt~~~~~--~g~ 143 (169)
.+...+.+|+++|+|+++||++|+.+... | +++.+.+.++..++.+|.+ +..+++..|++.++|++++++ +|+
T Consensus 10 ~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~ 89 (114)
T cd02958 10 KQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGE 89 (114)
T ss_pred HHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCc
Confidence 33444568999999999999999998764 3 5566666656777788876 456889999999999999995 799
Q ss_pred eeeeeeCCCCHHHHHHHHHhhhc
Q 030928 144 PSDRFEGAFSKDQLIQRIENSLS 166 (169)
Q Consensus 144 ~~~~~~G~~~~~~l~~~i~~~l~ 166 (169)
++.+..|..+.+++...|++++.
T Consensus 90 ~l~~~~G~~~~~~f~~~L~~~~~ 112 (114)
T cd02958 90 VLKVWSGNITPEDLLSQLIEFLE 112 (114)
T ss_pred EeEEEcCCCCHHHHHHHHHHHHh
Confidence 99999999999999999988764
No 94
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.56 E-value=6.3e-14 Score=89.46 Aligned_cols=76 Identities=16% Similarity=0.278 Sum_probs=65.8
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEcCCceeeeeeCCCCHHHH
Q 030928 78 DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSDRFEGAFSKDQL 157 (169)
Q Consensus 78 ~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l 157 (169)
+...+..|+++||++|....+.+++++.+++ ++.+..+|.++.++++++|||.++|++++ ||+++. .|..+.+++
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~-~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~~~--~G~~~~~e~ 86 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMAVLNP-NIEHEMIDGALFQDEVEERGIMSVPAIFL--NGELFG--FGRMTLEEI 86 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHHCC-CceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEEEE--eCCCCHHHH
Confidence 5567888999999999999999999999876 49999999999999999999999999976 888765 476666654
Q ss_pred H
Q 030928 158 I 158 (169)
Q Consensus 158 ~ 158 (169)
.
T Consensus 87 ~ 87 (89)
T cd03026 87 L 87 (89)
T ss_pred h
Confidence 3
No 95
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.55 E-value=2.8e-14 Score=99.06 Aligned_cols=84 Identities=35% Similarity=0.630 Sum_probs=68.3
Q ss_pred cCCCcEEEEEEcC-CChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC---------------------chhHHHhCCCC-
Q 030928 76 KSDKPVLVDFYAT-WCGPCQYMAPILNEVGAALKD-KIQVVKIDTEK---------------------YPQIADTYRIE- 131 (169)
Q Consensus 76 ~~~~~vvv~f~~~-~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~d~---------------------~~~l~~~~~v~- 131 (169)
..+++++|+||++ ||++|+..+|.+.++.+++++ .+.++.|..+. ...+.++|++.
T Consensus 26 ~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 105 (146)
T PF08534_consen 26 FKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTI 105 (146)
T ss_dssp GTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEE
T ss_pred hCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCcc
Confidence 3588999999999 999999999999999998765 48888776543 33677789998
Q ss_pred --------CCcEEEEE-cCCceeeeeeCCCC--HHHHHH
Q 030928 132 --------ALPTFILF-KDGKPSDRFEGAFS--KDQLIQ 159 (169)
Q Consensus 132 --------~~Pt~~~~-~~g~~~~~~~G~~~--~~~l~~ 159 (169)
++|+++++ ++|+++..+.|..+ ..++++
T Consensus 106 ~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~~~~~~~~~ 144 (146)
T PF08534_consen 106 MEDPGNGFGIPTTFLIDKDGKVVYRHVGPDPDEESDLEA 144 (146)
T ss_dssp ECCTTTTSSSSEEEEEETTSBEEEEEESSBTTSHHSHHH
T ss_pred ccccccCCeecEEEEEECCCEEEEEEeCCCCCCCCChhh
Confidence 99997777 59999999999877 344443
No 96
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.54 E-value=3.4e-14 Score=94.54 Aligned_cols=71 Identities=21% Similarity=0.466 Sum_probs=55.6
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCC--------------------chhHHHhCCCCCCcEE
Q 030928 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEK--------------------YPQIADTYRIEALPTF 136 (169)
Q Consensus 77 ~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~--------------------~~~l~~~~~v~~~Pt~ 136 (169)
.+++++|+||++||++|+.+.|.++++.+++.+++.++.+..+. +.++.++|++.++|+.
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~~ 99 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPYA 99 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCeE
Confidence 37899999999999999999999999998887667766662111 1245667899999998
Q ss_pred EEEc-CCceeee
Q 030928 137 ILFK-DGKPSDR 147 (169)
Q Consensus 137 ~~~~-~g~~~~~ 147 (169)
++++ +|+++.+
T Consensus 100 ~vid~~G~v~~~ 111 (114)
T cd02967 100 VLLDEAGVIAAK 111 (114)
T ss_pred EEECCCCeEEec
Confidence 8886 7877653
No 97
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.53 E-value=8.3e-14 Score=91.73 Aligned_cols=74 Identities=35% Similarity=0.720 Sum_probs=66.1
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhc-CCeEEEEEeCCCc-----------------------hhHHHhCCCCC
Q 030928 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALK-DKIQVVKIDTEKY-----------------------PQIADTYRIEA 132 (169)
Q Consensus 77 ~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~-~~v~~~~v~~d~~-----------------------~~l~~~~~v~~ 132 (169)
.+++++|.||++||+.|+...+.+.++..+++ .++.++.|++|.. ..+.+.|++.+
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG 97 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc
Confidence 37899999999999999999999999999986 3599999999885 67889999999
Q ss_pred CcEEEEEc-CCceeeeeeC
Q 030928 133 LPTFILFK-DGKPSDRFEG 150 (169)
Q Consensus 133 ~Pt~~~~~-~g~~~~~~~G 150 (169)
+|++++++ +|+++.++.|
T Consensus 98 ~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 98 LPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred cceEEEECCCCcEEEEecC
Confidence 99999886 8999888766
No 98
>PLN02412 probable glutathione peroxidase
Probab=99.53 E-value=1.3e-13 Score=98.08 Aligned_cols=112 Identities=21% Similarity=0.213 Sum_probs=82.5
Q ss_pred CCCcceecccCChhhHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC--------chhH-
Q 030928 55 RLLPVVEAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEK--------YPQI- 124 (169)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~d~--------~~~l- 124 (169)
...|.+.+.+.+.+.+. +-...++++||+||++||+.|+..+|.|.++.+++.+ ++.++.|+++. ..++
T Consensus 7 ~~~pdf~l~d~~G~~v~-l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~ 85 (167)
T PLN02412 7 KSIYDFTVKDIGGNDVS-LNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQ 85 (167)
T ss_pred CCCCceEEECCCCCEEe-HHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHH
Confidence 34566666655554332 1122478999999999999999999999999999986 48999998642 1121
Q ss_pred ---HHh---------------------CC-------------CCCCcEEEEE-cCCceeeeeeCCCCHHHHHHHHHhhhc
Q 030928 125 ---ADT---------------------YR-------------IEALPTFILF-KDGKPSDRFEGAFSKDQLIQRIENSLS 166 (169)
Q Consensus 125 ---~~~---------------------~~-------------v~~~Pt~~~~-~~g~~~~~~~G~~~~~~l~~~i~~~l~ 166 (169)
.++ |+ |.+.|+.+++ ++|+++.++.|..+.+++++.|+++|+
T Consensus 86 ~~~~~~~~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~ 165 (167)
T PLN02412 86 QTVCTRFKAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLG 165 (167)
T ss_pred HHHHHccCCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence 111 11 4446887777 599999999999999999999999986
Q ss_pred c
Q 030928 167 V 167 (169)
Q Consensus 167 ~ 167 (169)
.
T Consensus 166 ~ 166 (167)
T PLN02412 166 Q 166 (167)
T ss_pred h
Confidence 4
No 99
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.53 E-value=9e-14 Score=99.61 Aligned_cols=82 Identities=21% Similarity=0.278 Sum_probs=66.2
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEE------EEEeCCCc-----------------------------
Q 030928 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQV------VKIDTEKY----------------------------- 121 (169)
Q Consensus 77 ~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~------~~v~~d~~----------------------------- 121 (169)
.||+.+|+|||.||++|+..+|.++++..+ ++.+ +.||.|+.
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~---~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~ 134 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAA---KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDK 134 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHc---CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCc
Confidence 499999999999999999999999999654 3555 67776642
Q ss_pred hhHHHhCCCCCCcEE-EEE-cCCceeeeeeCCCCHHHHHHHH
Q 030928 122 PQIADTYRIEALPTF-ILF-KDGKPSDRFEGAFSKDQLIQRI 161 (169)
Q Consensus 122 ~~l~~~~~v~~~Pt~-~~~-~~g~~~~~~~G~~~~~~l~~~i 161 (169)
..+..+||+.++|+. +++ ++|+++.++.|..+.+++++.+
T Consensus 135 g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~ 176 (184)
T TIGR01626 135 GAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVI 176 (184)
T ss_pred chHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 134557999999775 555 5999999999999998887744
No 100
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=1.1e-14 Score=117.41 Aligned_cols=115 Identities=18% Similarity=0.429 Sum_probs=91.1
Q ss_pred cccCCCcceecccCChhhHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC---CeEEEEEeCC--CchhHHH
Q 030928 52 SKRRLLPVVEAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKD---KIQVVKIDTE--KYPQIAD 126 (169)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~---~v~~~~v~~d--~~~~l~~ 126 (169)
...-+.+...+..++.++|+..+..+.+..+|.||++|||+|+++.|.++++++...+ -+.++.|||. +|..+|+
T Consensus 31 ~ptLy~~~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCR 110 (606)
T KOG1731|consen 31 NPTLYSPDDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCR 110 (606)
T ss_pred CCcccCCCCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHh
Confidence 3344556677888999999999987778999999999999999999999999998765 3778899985 5779999
Q ss_pred hCCCCCCcEEEEEc----CCceeeeeeCCCCHHHHHHHHHhhhc
Q 030928 127 TYRIEALPTFILFK----DGKPSDRFEGAFSKDQLIQRIENSLS 166 (169)
Q Consensus 127 ~~~v~~~Pt~~~~~----~g~~~~~~~G~~~~~~l~~~i~~~l~ 166 (169)
+|+|.++|++.+|. ++..-..+.|.....++.+.+.+.+.
T Consensus 111 ef~V~~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la 154 (606)
T KOG1731|consen 111 EFSVSGYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLA 154 (606)
T ss_pred hcCCCCCceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHH
Confidence 99999999999995 22212244555667777777766654
No 101
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.51 E-value=1.6e-13 Score=93.09 Aligned_cols=75 Identities=23% Similarity=0.372 Sum_probs=63.3
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCC---------------------------CchhHHHhC
Q 030928 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTE---------------------------KYPQIADTY 128 (169)
Q Consensus 77 ~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~d---------------------------~~~~l~~~~ 128 (169)
.+++++|+||++||+.|+...|.|+++.+++++ ++.++.|+.+ ....+.+.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 478999999999999999999999999999985 4888877542 122566779
Q ss_pred CCCCCcEEEEEc-CCceeeeeeCC
Q 030928 129 RIEALPTFILFK-DGKPSDRFEGA 151 (169)
Q Consensus 129 ~v~~~Pt~~~~~-~g~~~~~~~G~ 151 (169)
++.++|+.++++ +|+++.++.|.
T Consensus 102 ~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 102 GNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred CCCcCCeEEEECCCCcEEEEEecC
Confidence 999999999995 89999998885
No 102
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.50 E-value=2.1e-13 Score=98.80 Aligned_cols=108 Identities=18% Similarity=0.303 Sum_probs=73.8
Q ss_pred CCCcceecccCChhhHHHH-HhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEe-------------C--
Q 030928 55 RLLPVVEAKKQTFSSLDDL-LQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKID-------------T-- 118 (169)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~-~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~-------------~-- 118 (169)
...|.+.+.+.+...+.-. ....+++++|+||++||+.|+.+.|.+.++.++++.++.++..+ .
T Consensus 50 ~~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is~~~~~~~~~~~~~~~~~~ 129 (189)
T TIGR02661 50 DAAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAEETDVVMISDGTPAEHRRFLKDHELGG 129 (189)
T ss_pred CcCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHHhcCCCc
Confidence 4456677776666543311 12357899999999999999999999999987754334333311 0
Q ss_pred ---CCchhHHHhCCCCCCcEEEEEc-CCceeeeeeCC-CCHHHHHHHHHhh
Q 030928 119 ---EKYPQIADTYRIEALPTFILFK-DGKPSDRFEGA-FSKDQLIQRIENS 164 (169)
Q Consensus 119 ---d~~~~l~~~~~v~~~Pt~~~~~-~g~~~~~~~G~-~~~~~l~~~i~~~ 164 (169)
....++.++|++.++|+.++++ +|+++.+ |. ...+.+++.++.+
T Consensus 130 ~~~~~~~~i~~~y~v~~~P~~~lID~~G~I~~~--g~~~~~~~le~ll~~l 178 (189)
T TIGR02661 130 ERYVVSAEIGMAFQVGKIPYGVLLDQDGKIRAK--GLTNTREHLESLLEAD 178 (189)
T ss_pred ceeechhHHHHhccCCccceEEEECCCCeEEEc--cCCCCHHHHHHHHHHH
Confidence 1134677889999999977775 8988765 43 4556777777654
No 103
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.50 E-value=6.8e-13 Score=94.60 Aligned_cols=92 Identities=24% Similarity=0.369 Sum_probs=74.8
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC-----------------------------chhHHH
Q 030928 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEK-----------------------------YPQIAD 126 (169)
Q Consensus 77 ~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~d~-----------------------------~~~l~~ 126 (169)
.++++||+||++||+.|....+.+.++.+++.+ ++.++.|..|. ...+.+
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 478999999999999999999999999999974 58999887753 124566
Q ss_pred hCCCCCCcEEEEEc-CCceeeeee---------CCCCHHHHHHHHHhhhccC
Q 030928 127 TYRIEALPTFILFK-DGKPSDRFE---------GAFSKDQLIQRIENSLSVK 168 (169)
Q Consensus 127 ~~~v~~~Pt~~~~~-~g~~~~~~~---------G~~~~~~l~~~i~~~l~~~ 168 (169)
.|++..+|++++++ +|+++.... +..+.+++.+.|+.+++..
T Consensus 104 ~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 155 (171)
T cd02969 104 AYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGK 155 (171)
T ss_pred HcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCC
Confidence 89999999998886 898876531 2356788999999988754
No 104
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1.9e-13 Score=109.10 Aligned_cols=107 Identities=28% Similarity=0.526 Sum_probs=94.8
Q ss_pred ecccCChhhHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhc--CCeEEEEEeCCCchhHHHhCCCCCCcEEEE
Q 030928 61 EAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALK--DKIQVVKIDTEKYPQIADTYRIEALPTFIL 138 (169)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~--~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~ 138 (169)
.+.+++..+|...+.+.+..++|.||+|||++|+.+.|.|++++..+. ..+.++.+|++....++.+++|.++||+.+
T Consensus 145 ~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~ 224 (383)
T KOG0191|consen 145 EVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKL 224 (383)
T ss_pred ceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEE
Confidence 355667778888888888899999999999999999999999999885 469999999998899999999999999999
Q ss_pred EcCCce-eeeeeCCCCHHHHHHHHHhhhcc
Q 030928 139 FKDGKP-SDRFEGAFSKDQLIQRIENSLSV 167 (169)
Q Consensus 139 ~~~g~~-~~~~~G~~~~~~l~~~i~~~l~~ 167 (169)
|.+|.. ...+.|..+.+.+..|+.+..+.
T Consensus 225 f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~ 254 (383)
T KOG0191|consen 225 FPPGEEDIYYYSGLRDSDSIVSFVEKKERR 254 (383)
T ss_pred ecCCCcccccccccccHHHHHHHHHhhcCC
Confidence 988877 77888999999999999876643
No 105
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.46 E-value=4e-13 Score=90.92 Aligned_cols=86 Identities=14% Similarity=0.189 Sum_probs=58.4
Q ss_pred ChhhHHHHHhcCCCcEEEEEEcCCChhhhhhhHHH---HHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEc-C
Q 030928 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPIL---NEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFK-D 141 (169)
Q Consensus 66 ~~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l---~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~-~ 141 (169)
+.++-.+.....+|+++|+|+++||++|+.+...+ .++.+....++..+.++.|....-....| .++||++|++ +
T Consensus 11 ~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~~g-~~vPtivFld~~ 89 (130)
T cd02960 11 TYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSPDG-QYVPRIMFVDPS 89 (130)
T ss_pred hHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCccC-cccCeEEEECCC
Confidence 33444444456689999999999999999998865 44555554345555666553221111244 7899999996 8
Q ss_pred CceeeeeeCCC
Q 030928 142 GKPSDRFEGAF 152 (169)
Q Consensus 142 g~~~~~~~G~~ 152 (169)
|+++.++.|..
T Consensus 90 g~vi~~i~Gy~ 100 (130)
T cd02960 90 LTVRADITGRY 100 (130)
T ss_pred CCCcccccccc
Confidence 99888887764
No 106
>smart00594 UAS UAS domain.
Probab=99.43 E-value=3.8e-12 Score=86.00 Aligned_cols=95 Identities=9% Similarity=0.217 Sum_probs=73.4
Q ss_pred hhhHHHHHhcCCCcEEEEEEcCCChhhhhhhHHH---HHHHHHhcCCeEEEEEeCC--CchhHHHhCCCCCCcEEEEEc-
Q 030928 67 FSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPIL---NEVGAALKDKIQVVKIDTE--KYPQIADTYRIEALPTFILFK- 140 (169)
Q Consensus 67 ~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l---~~~~~~~~~~v~~~~v~~d--~~~~l~~~~~v~~~Pt~~~~~- 140 (169)
.++..+...+.+|+++|+|+++||+.|+.+...+ .++.+....++.+..+|.+ +..+++.+|++.++|+++++.
T Consensus 16 ~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~ 95 (122)
T smart00594 16 LEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDP 95 (122)
T ss_pred HHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEec
Confidence 3333344445688999999999999999988754 5555656556777777765 456789999999999999995
Q ss_pred CC-----ceeeeeeCCCCHHHHHHHH
Q 030928 141 DG-----KPSDRFEGAFSKDQLIQRI 161 (169)
Q Consensus 141 ~g-----~~~~~~~G~~~~~~l~~~i 161 (169)
+| +++.++.|..+.+++...|
T Consensus 96 ~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 96 RTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred CCCceeEEEeccccCCCCHHHHHHhh
Confidence 55 3678899999999998876
No 107
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.42 E-value=2.5e-12 Score=90.16 Aligned_cols=89 Identities=17% Similarity=0.221 Sum_probs=68.9
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeC--------CCch---hHHHh-C---------------
Q 030928 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKIDT--------EKYP---QIADT-Y--------------- 128 (169)
Q Consensus 77 ~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~--------d~~~---~l~~~-~--------------- 128 (169)
.++++||+||++||++|+..+|.+.++.+++++ .+.++.|++ +... +.+++ +
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~~ 100 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILGS 100 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCCC
Confidence 478999999999999999999999999999985 588998885 2111 22221 1
Q ss_pred --------CC---CCCcE-----EEEEcCCceeeeeeCCCCHHHHHHHHHhhh
Q 030928 129 --------RI---EALPT-----FILFKDGKPSDRFEGAFSKDQLIQRIENSL 165 (169)
Q Consensus 129 --------~v---~~~Pt-----~~~~~~g~~~~~~~G~~~~~~l~~~i~~~l 165 (169)
.+ .++|+ +++-++|+++.++.|..+.+++.+.|++++
T Consensus 101 ~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l~ 153 (153)
T TIGR02540 101 EAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITALV 153 (153)
T ss_pred CCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHhC
Confidence 11 24784 555569999999999999999999998764
No 108
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.40 E-value=1.5e-12 Score=91.14 Aligned_cols=83 Identities=24% Similarity=0.338 Sum_probs=63.2
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC--------c---hhHHHh-C---------------
Q 030928 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEK--------Y---PQIADT-Y--------------- 128 (169)
Q Consensus 77 ~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~d~--------~---~~l~~~-~--------------- 128 (169)
.+++++|+||++||+ |+..+|.|+++.+++.+ ++.++.|+++. . .+++++ +
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp~~~d~d~~~~ 99 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFAKIDVNGE 99 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCceeeeeEeccCC
Confidence 478999999999999 99999999999999974 58898887642 1 122222 2
Q ss_pred ------C--CCCCc-----------EEEEE-cCCceeeeeeCCCCHHHHHHH
Q 030928 129 ------R--IEALP-----------TFILF-KDGKPSDRFEGAFSKDQLIQR 160 (169)
Q Consensus 129 ------~--v~~~P-----------t~~~~-~~g~~~~~~~G~~~~~~l~~~ 160 (169)
+ +.++| +.+++ ++|+++.++.|..+.+++++.
T Consensus 100 ~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 100 NAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred CCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 2 23466 45555 699999999999999888654
No 109
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.39 E-value=2.9e-12 Score=104.43 Aligned_cols=96 Identities=26% Similarity=0.590 Sum_probs=78.8
Q ss_pred hHHHHHhc-CCCcEEEEEEcCCChhhhhhhHHH---HHHHHHhcCCeEEEEEeCCCc----hhHHHhCCCCCCcEEEEEc
Q 030928 69 SLDDLLQK-SDKPVLVDFYATWCGPCQYMAPIL---NEVGAALKDKIQVVKIDTEKY----PQIADTYRIEALPTFILFK 140 (169)
Q Consensus 69 ~~~~~~~~-~~~~vvv~f~~~~C~~C~~~~~~l---~~~~~~~~~~v~~~~v~~d~~----~~l~~~~~v~~~Pt~~~~~ 140 (169)
++++.+.+ .+|+|+++|||+||..||.+++.. .+...+..| +.+.++|..++ .++.++||+-|+|++++|.
T Consensus 464 ~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~-~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~~ff~ 542 (569)
T COG4232 464 ELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQD-VVLLQADVTANDPAITALLKRLGVFGVPTYLFFG 542 (569)
T ss_pred HHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCC-eEEEEeeecCCCHHHHHHHHHcCCCCCCEEEEEC
Confidence 66666644 356999999999999999999866 344555554 88999997654 4788999999999999997
Q ss_pred -CCceeeeeeCCCCHHHHHHHHHhhh
Q 030928 141 -DGKPSDRFEGAFSKDQLIQRIENSL 165 (169)
Q Consensus 141 -~g~~~~~~~G~~~~~~l~~~i~~~l 165 (169)
+|++.....|.++.+.+.+++++..
T Consensus 543 ~~g~e~~~l~gf~~a~~~~~~l~~~~ 568 (569)
T COG4232 543 PQGSEPEILTGFLTADAFLEHLERAA 568 (569)
T ss_pred CCCCcCcCCcceecHHHHHHHHHHhc
Confidence 8888777999999999999998753
No 110
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.38 E-value=5.4e-12 Score=91.02 Aligned_cols=111 Identities=20% Similarity=0.225 Sum_probs=77.9
Q ss_pred CCCcceecccCChhhHHHHHhcCCCcE-EEEEEcCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC-------c-h--
Q 030928 55 RLLPVVEAKKQTFSSLDDLLQKSDKPV-LVDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEK-------Y-P-- 122 (169)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~v-vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~d~-------~-~-- 122 (169)
...|.+.+.+.+.+.+. +.+-.++++ ++.+|++||++|+..+|.|+++.+++.+ ++.++.|+++. . .
T Consensus 18 ~~~p~f~l~d~~G~~vs-Ls~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~ 96 (183)
T PTZ00256 18 KSFFEFEAIDIDGQLVQ-LSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEI 96 (183)
T ss_pred CcccceEeEcCCCCEEe-HHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHH
Confidence 34466666655554332 112246754 4566999999999999999999999975 48899987641 0 1
Q ss_pred -hH-HHh------------------------------------CCCCCCcE----EEEEcCCceeeeeeCCCCHHHHHHH
Q 030928 123 -QI-ADT------------------------------------YRIEALPT----FILFKDGKPSDRFEGAFSKDQLIQR 160 (169)
Q Consensus 123 -~l-~~~------------------------------------~~v~~~Pt----~~~~~~g~~~~~~~G~~~~~~l~~~ 160 (169)
.. .++ +++.++|+ +++-++|+++.++.|..+.+++.+.
T Consensus 97 ~~f~~~~~~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~ 176 (183)
T PTZ00256 97 KEYVQKKFNVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQD 176 (183)
T ss_pred HHHHHHhcCCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHH
Confidence 01 111 13557794 5555699999999999999999999
Q ss_pred HHhhhc
Q 030928 161 IENSLS 166 (169)
Q Consensus 161 i~~~l~ 166 (169)
|+++++
T Consensus 177 I~~ll~ 182 (183)
T PTZ00256 177 IEKLLN 182 (183)
T ss_pred HHHHhc
Confidence 998875
No 111
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.32 E-value=1.3e-11 Score=80.87 Aligned_cols=88 Identities=40% Similarity=0.859 Sum_probs=74.5
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCC-CchhHHHhCC--CCCCcEEEEEcCCceeeeeeC--CC
Q 030928 78 DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTE-KYPQIADTYR--IEALPTFILFKDGKPSDRFEG--AF 152 (169)
Q Consensus 78 ~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d-~~~~l~~~~~--v~~~Pt~~~~~~g~~~~~~~G--~~ 152 (169)
++++++.||++||++|+.++|.+.++++++...+.++.+|.. .++++...|+ +..+|+++++.+|+......| ..
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 111 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVGGKVL 111 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchhhhhhhcccC
Confidence 679999999999999999999999999999877899999997 7899999999 999999998888876656666 56
Q ss_pred CHHHHHHHHHhhh
Q 030928 153 SKDQLIQRIENSL 165 (169)
Q Consensus 153 ~~~~l~~~i~~~l 165 (169)
+...+.....+..
T Consensus 112 ~~~~~~~~~~~~~ 124 (127)
T COG0526 112 PKEALIDALGELL 124 (127)
T ss_pred CHHHHHHHhcchh
Confidence 6666666655543
No 112
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.32 E-value=1.8e-11 Score=84.11 Aligned_cols=85 Identities=19% Similarity=0.252 Sum_probs=69.8
Q ss_pred CCCcEEEEEE-cCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC---------------------chhHHHhCCCCCC
Q 030928 77 SDKPVLVDFY-ATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEK---------------------YPQIADTYRIEAL 133 (169)
Q Consensus 77 ~~~~vvv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~d~---------------------~~~l~~~~~v~~~ 133 (169)
.+++++|+|| +.||+.|....+.+.++..++.+ ++.++.|..|. ...+.+.||+...
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 101 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGE 101 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccc
Confidence 3789999999 58999999999999999988864 47888776543 3366778999988
Q ss_pred ---------cEEEEEc-CCceeeeeeCCCCHHHHHHHH
Q 030928 134 ---------PTFILFK-DGKPSDRFEGAFSKDQLIQRI 161 (169)
Q Consensus 134 ---------Pt~~~~~-~g~~~~~~~G~~~~~~l~~~i 161 (169)
|++++++ +|+++..+.|....+.+.+.+
T Consensus 102 ~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~ 139 (140)
T cd03017 102 KKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVL 139 (140)
T ss_pred cccccCCcceeEEEECCCCEEEEEEecCCccchHHHHh
Confidence 8888886 899999999999888777654
No 113
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.30 E-value=9.2e-12 Score=78.26 Aligned_cols=68 Identities=37% Similarity=0.637 Sum_probs=51.8
Q ss_pred HHHhcCCCcEEEEEEcCCChhhhhhhHHH---HHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEc
Q 030928 72 DLLQKSDKPVLVDFYATWCGPCQYMAPIL---NEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFK 140 (169)
Q Consensus 72 ~~~~~~~~~vvv~f~~~~C~~C~~~~~~l---~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~ 140 (169)
+...+.+++++|+|+++||+.|+.+...+ .++.+.+.+++.++.||.+.........+ +++|++++++
T Consensus 11 ~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~-~~~P~~~~ld 81 (82)
T PF13899_consen 11 AEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR-QGYPTFFFLD 81 (82)
T ss_dssp HHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH-CSSSEEEEEE
T ss_pred HHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC-ccCCEEEEeC
Confidence 33445689999999999999999998877 55655455579999999987665443222 7799999874
No 114
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.24 E-value=1.8e-10 Score=81.96 Aligned_cols=106 Identities=13% Similarity=0.174 Sum_probs=73.0
Q ss_pred cCCCcceecccCChhhHHHHHhcCCCcEEEEEEcCC-ChhhhhhhHHHHHHHHHhcCCeEEEEEeCCC------------
Q 030928 54 RRLLPVVEAKKQTFSSLDDLLQKSDKPVLVDFYATW-CGPCQYMAPILNEVGAALKDKIQVVKIDTEK------------ 120 (169)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~f~~~~-C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~------------ 120 (169)
+...|.+.+.+.+...+. +..-.+++++|+||+.| |+.|...++.+.++++++. ++.++.|+.|.
T Consensus 21 G~~~P~f~l~~~~g~~v~-l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-~~~vv~vs~D~~~~~~~f~~~~~ 98 (167)
T PRK00522 21 GDKAPDFTLVANDLSDVS-LADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-NTVVLCISADLPFAQKRFCGAEG 98 (167)
T ss_pred CCCCCCeEEEcCCCcEEe-hHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-CcEEEEEeCCCHHHHHHHHHhCC
Confidence 344555555554443322 11224789999999999 9999999999999999985 58888776542
Q ss_pred -----------chhHHHhCCCCCCc---------EEEEEc-CCceeeeeeCC--C---CHHHHHHHH
Q 030928 121 -----------YPQIADTYRIEALP---------TFILFK-DGKPSDRFEGA--F---SKDQLIQRI 161 (169)
Q Consensus 121 -----------~~~l~~~~~v~~~P---------t~~~~~-~g~~~~~~~G~--~---~~~~l~~~i 161 (169)
...+++.||+.+.| +.++++ +|+++..+.+. . ..+++.++|
T Consensus 99 ~~~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~~~~~~~~~~~~~~l~~l 165 (167)
T PRK00522 99 LENVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSELVPEITNEPDYDAALAAL 165 (167)
T ss_pred CCCceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEEECCCcCCCCCHHHHHHHh
Confidence 22677889998877 777775 99998887532 2 344444444
No 115
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.22 E-value=5.3e-11 Score=80.06 Aligned_cols=90 Identities=33% Similarity=0.503 Sum_probs=67.1
Q ss_pred CCcceecccCChhhHHHHHhcCCCcEEEEEEcC-CChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCCc------------
Q 030928 56 LLPVVEAKKQTFSSLDDLLQKSDKPVLVDFYAT-WCGPCQYMAPILNEVGAALKD-KIQVVKIDTEKY------------ 121 (169)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~vvv~f~~~-~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~d~~------------ 121 (169)
..|.+.+...+...+.- .+-.+++++|.||+. ||+.|+...+.+.++..++++ ++.++.|..|..
T Consensus 4 ~~P~f~l~~~~g~~~~l-~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~ 82 (124)
T PF00578_consen 4 KAPDFTLTDSDGKTVSL-SDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGL 82 (124)
T ss_dssp BGGCEEEETTTSEEEEG-GGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTC
T ss_pred CCCCcEeECCCCCEEEH-HHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhcc
Confidence 34555555554433221 112578999999999 999999999999999999885 599999977543
Q ss_pred ---------hhHHHhCCCC------CCcEEEEEc-CCceee
Q 030928 122 ---------PQIADTYRIE------ALPTFILFK-DGKPSD 146 (169)
Q Consensus 122 ---------~~l~~~~~v~------~~Pt~~~~~-~g~~~~ 146 (169)
.++.+.|++. .+|++++++ +|++++
T Consensus 83 ~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 83 PFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIRY 123 (124)
T ss_dssp SSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEEE
T ss_pred ccccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEEe
Confidence 3667789998 999988885 787764
No 116
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.22 E-value=2.2e-10 Score=80.22 Aligned_cols=107 Identities=22% Similarity=0.252 Sum_probs=74.4
Q ss_pred CCCcceecccCChhhHHHHHhcCCCcEEEEEEcC-CChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC------------
Q 030928 55 RLLPVVEAKKQTFSSLDDLLQKSDKPVLVDFYAT-WCGPCQYMAPILNEVGAALKD-KIQVVKIDTEK------------ 120 (169)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~f~~~-~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~d~------------ 120 (169)
...|.+.+.+.+.+.+. +-...+++++|+||+. ||+.|....+.+.++.+++.+ ++.++.|..|.
T Consensus 8 ~~~p~f~l~~~~G~~~~-l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~ 86 (154)
T PRK09437 8 DIAPKFSLPDQDGEQVS-LTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKEL 86 (154)
T ss_pred CcCCCcEeeCCCCCEEe-HHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhC
Confidence 33455555555544322 1112478999999975 788999999999999988864 48888887653
Q ss_pred ---------chhHHHhCCCCCC------------cEEEEE-cCCceeeeeeCCCCHHHHHHHHH
Q 030928 121 ---------YPQIADTYRIEAL------------PTFILF-KDGKPSDRFEGAFSKDQLIQRIE 162 (169)
Q Consensus 121 ---------~~~l~~~~~v~~~------------Pt~~~~-~~g~~~~~~~G~~~~~~l~~~i~ 162 (169)
...+.+.||+... |+.+++ ++|+++..+.|....+.+.+.++
T Consensus 87 ~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~~~~~~~ 150 (154)
T PRK09437 87 LNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNHHDVVLD 150 (154)
T ss_pred CCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEcCCCcchhHHHHHH
Confidence 2356677888654 565666 49999999999877666555443
No 117
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=2.7e-10 Score=78.19 Aligned_cols=88 Identities=20% Similarity=0.414 Sum_probs=72.4
Q ss_pred cCCCcEEEEEEcCCChhhhhhhHHH---HHHHHHhcCCeEEEEEeCCC----------------chhHHHhCCCCCCcEE
Q 030928 76 KSDKPVLVDFYATWCGPCQYMAPIL---NEVGAALKDKIQVVKIDTEK----------------YPQIADTYRIEALPTF 136 (169)
Q Consensus 76 ~~~~~vvv~f~~~~C~~C~~~~~~l---~~~~~~~~~~v~~~~v~~d~----------------~~~l~~~~~v~~~Pt~ 136 (169)
-.++..++.|-.+.|++|.+++..+ +++.+.+.+.+.++.++... .+++++.|+|+++||+
T Consensus 40 ~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtf 119 (182)
T COG2143 40 PNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTF 119 (182)
T ss_pred ccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceE
Confidence 3478999999999999999998876 45555566667777776432 3589999999999999
Q ss_pred EEEc-CCceeeeeeCCCCHHHHHHHHHh
Q 030928 137 ILFK-DGKPSDRFEGAFSKDQLIQRIEN 163 (169)
Q Consensus 137 ~~~~-~g~~~~~~~G~~~~~~l~~~i~~ 163 (169)
++|+ +|+.+....|.++.+++...+.-
T Consensus 120 vFfdk~Gk~Il~lPGY~ppe~Fl~vlkY 147 (182)
T COG2143 120 VFFDKTGKTILELPGYMPPEQFLAVLKY 147 (182)
T ss_pred EEEcCCCCEEEecCCCCCHHHHHHHHHH
Confidence 9996 89999999999999998877643
No 118
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.21 E-value=1.5e-10 Score=82.74 Aligned_cols=89 Identities=17% Similarity=0.213 Sum_probs=68.4
Q ss_pred CCCcEEEEEE-cCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCCc----------------------------hhHHH
Q 030928 77 SDKPVLVDFY-ATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEKY----------------------------PQIAD 126 (169)
Q Consensus 77 ~~~~vvv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~d~~----------------------------~~l~~ 126 (169)
.++++||+|| +.||+.|....+.|.++++++.+ ++.++.|..|.. ..+.+
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 107 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR 107 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence 4689999999 89999999999999999999874 477777765432 24556
Q ss_pred hCCCC------CCcEEEEEc-CCceeeeeeCC----CCHHHHHHHHHhhh
Q 030928 127 TYRIE------ALPTFILFK-DGKPSDRFEGA----FSKDQLIQRIENSL 165 (169)
Q Consensus 127 ~~~v~------~~Pt~~~~~-~g~~~~~~~G~----~~~~~l~~~i~~~l 165 (169)
.||+. ..|+.++++ +|+++..+.+. .+.+++.+.|+.+.
T Consensus 108 ~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~~ 157 (173)
T cd03015 108 DYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDALQ 157 (173)
T ss_pred HhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 78886 567888876 99999888554 35677888886654
No 119
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.20 E-value=1.6e-10 Score=79.89 Aligned_cols=84 Identities=12% Similarity=0.145 Sum_probs=64.1
Q ss_pred CCCcEEEEEEcCC-ChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCc-----------------------hhHHHhCCCCC
Q 030928 77 SDKPVLVDFYATW-CGPCQYMAPILNEVGAALKDKIQVVKIDTEKY-----------------------PQIADTYRIEA 132 (169)
Q Consensus 77 ~~~~vvv~f~~~~-C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~-----------------------~~l~~~~~v~~ 132 (169)
.++++|++||+.| |++|+..++.+.++.+++. ++.++.|+.|.. ..+++.||+..
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~-~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~ 103 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD-NTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLI 103 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC-CCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCee
Confidence 4789999999988 7999999999999999986 488888876531 35667788763
Q ss_pred ------CcEEEEEc-CCceeeeeeCC--CCHHHHHHHH
Q 030928 133 ------LPTFILFK-DGKPSDRFEGA--FSKDQLIQRI 161 (169)
Q Consensus 133 ------~Pt~~~~~-~g~~~~~~~G~--~~~~~l~~~i 161 (169)
.|+.++++ +|+++..+.|. ....++++.|
T Consensus 104 ~~~~~~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~~ 141 (143)
T cd03014 104 KDLGLLARAVFVIDENGKVIYVELVPEITDEPDYEAAL 141 (143)
T ss_pred ccCCccceEEEEEcCCCeEEEEEECCCcccCCCHHHHh
Confidence 68877775 99999888765 3334454443
No 120
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=99.20 E-value=3.3e-10 Score=70.17 Aligned_cols=72 Identities=29% Similarity=0.588 Sum_probs=57.5
Q ss_pred EEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEcCCceeeeeeC-CCCHHHHHHHHH
Q 030928 84 DFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSDRFEG-AFSKDQLIQRIE 162 (169)
Q Consensus 84 ~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~G-~~~~~~l~~~i~ 162 (169)
.+++++|++|..+.+.+++++.+++ +.+-.++..+.+++ .+|||.++|++++ ||++ ++.| .++.++++++|+
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~~--i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng~~--~~~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEELG--IEVEIIDIEDFEEI-EKYGVMSVPALVI--NGKV--VFVGRVPSKEELKELLE 76 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHTT--EEEEEEETTTHHHH-HHTT-SSSSEEEE--TTEE--EEESS--HHHHHHHHHH
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhcC--CeEEEEEccCHHHH-HHcCCCCCCEEEE--CCEE--EEEecCCCHHHHHHHhC
Confidence 3468889999999999999999984 66666777776777 9999999999987 8875 4778 788899998874
No 121
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.19 E-value=2.1e-10 Score=69.84 Aligned_cols=68 Identities=25% Similarity=0.494 Sum_probs=53.0
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchh----HHHhCCCCCCcEEEEEcCCceeeeeeCCCCHHHH
Q 030928 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQ----IADTYRIEALPTFILFKDGKPSDRFEGAFSKDQL 157 (169)
Q Consensus 82 vv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~----l~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l 157 (169)
+..|+++||++|+.+++.|++ . ++.+..+|++++++ +.+.+++.++|++++ +|+. +.| .+.+++
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-----~-~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~--~~~~---~~g-~~~~~i 69 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-----K-GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVI--GHKI---IVG-FDPEKL 69 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-----C-CCeEEEEeccCCHHHHHHHHHHhCCCcccEEEE--CCEE---Eee-CCHHHH
Confidence 567999999999999988865 2 47888899887654 456799999999988 4654 445 477888
Q ss_pred HHHH
Q 030928 158 IQRI 161 (169)
Q Consensus 158 ~~~i 161 (169)
.++|
T Consensus 70 ~~~i 73 (74)
T TIGR02196 70 DQLL 73 (74)
T ss_pred HHHh
Confidence 8776
No 122
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.17 E-value=5.4e-10 Score=77.62 Aligned_cols=84 Identities=14% Similarity=0.272 Sum_probs=63.1
Q ss_pred CcEEEEEE-cCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC---------------------c--hhHHHhCCCCC-
Q 030928 79 KPVLVDFY-ATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEK---------------------Y--PQIADTYRIEA- 132 (169)
Q Consensus 79 ~~vvv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~d~---------------------~--~~l~~~~~v~~- 132 (169)
++++|.|| ++||+.|....|.+.++.+++.+ ++.++.|+.|. . ..+.+.||+..
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~~~ 108 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVFDE 108 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCccc
Confidence 78888887 99999999999999999999864 58888776432 3 46677888873
Q ss_pred ---Cc--EEEEEc-CCceeeeeeCCC----CHHHHHHHHH
Q 030928 133 ---LP--TFILFK-DGKPSDRFEGAF----SKDQLIQRIE 162 (169)
Q Consensus 133 ---~P--t~~~~~-~g~~~~~~~G~~----~~~~l~~~i~ 162 (169)
.| ++++++ +|+++..+.|.. +..++++.|+
T Consensus 109 ~~~~~~~~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~ 148 (149)
T cd03018 109 DLGVAERAVFVIDRDGIIRYAWVSDDGEPRDLPDYDEALD 148 (149)
T ss_pred cCCCccceEEEECCCCEEEEEEecCCcccccchhHHHHhh
Confidence 33 666665 999999888864 4555655554
No 123
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.17 E-value=4.5e-10 Score=81.30 Aligned_cols=87 Identities=17% Similarity=0.183 Sum_probs=65.7
Q ss_pred CCCcEEEEEE-cCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC-------------------------chhHHHhCC
Q 030928 77 SDKPVLVDFY-ATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEK-------------------------YPQIADTYR 129 (169)
Q Consensus 77 ~~~~vvv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~d~-------------------------~~~l~~~~~ 129 (169)
.++++||+|| +.||+.|....+.+.++..++.+ ++.++.|..|. ...+++.||
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g 109 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG 109 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence 4789999999 99999999999999999888863 47777776553 235667889
Q ss_pred CC------CCcEEEEEc-CCceeeeeeCC----CCHHHHHHHHHh
Q 030928 130 IE------ALPTFILFK-DGKPSDRFEGA----FSKDQLIQRIEN 163 (169)
Q Consensus 130 v~------~~Pt~~~~~-~g~~~~~~~G~----~~~~~l~~~i~~ 163 (169)
|. ..|+.++++ +|++...+.+. .+.+++.+.|+.
T Consensus 110 v~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~ 154 (187)
T TIGR03137 110 VLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKA 154 (187)
T ss_pred CcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 86 458877775 99998776432 366777776643
No 124
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.14 E-value=6e-10 Score=77.18 Aligned_cols=73 Identities=18% Similarity=0.271 Sum_probs=54.3
Q ss_pred CCcE-EEEEEcCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC---------------------chhHHHhCCCC---
Q 030928 78 DKPV-LVDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEK---------------------YPQIADTYRIE--- 131 (169)
Q Consensus 78 ~~~v-vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~d~---------------------~~~l~~~~~v~--- 131 (169)
++++ |++||+.||+.|+...+.|.++.+++.+ ++.++.|+.+. +..+.+.||+.
T Consensus 23 ~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~g~~~~~ 102 (149)
T cd02970 23 EGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFLPFPVYADPDRKLYRALGLVRSL 102 (149)
T ss_pred CCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCCCCeEEECCchhHHHHcCceecC
Confidence 3455 4445699999999999999999999864 58888887654 33556677874
Q ss_pred --------------------------CCcEEEEEc-CCceeeeeeC
Q 030928 132 --------------------------ALPTFILFK-DGKPSDRFEG 150 (169)
Q Consensus 132 --------------------------~~Pt~~~~~-~g~~~~~~~G 150 (169)
..|..++++ +|++...+.|
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~~ 148 (149)
T cd02970 103 PWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHVD 148 (149)
T ss_pred cHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEecC
Confidence 688877775 7887776655
No 125
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.14 E-value=4e-10 Score=69.45 Aligned_cols=70 Identities=26% Similarity=0.414 Sum_probs=51.6
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHh-----CCCCCCcEEEEEcCCceeeeeeCCCCHHH
Q 030928 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADT-----YRIEALPTFILFKDGKPSDRFEGAFSKDQ 156 (169)
Q Consensus 82 vv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~-----~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~ 156 (169)
++.||++||++|+++++.|.++. +.|-.+|++++++.... +++.++|++ ++.+|+.+ ...+..+
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~------~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l----~~~~~~~ 70 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG------AAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFL----TNPSAAQ 70 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC------CceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEe----cCCCHHH
Confidence 67899999999999999886542 45566888877666555 389999997 46677643 3566667
Q ss_pred HHHHHH
Q 030928 157 LIQRIE 162 (169)
Q Consensus 157 l~~~i~ 162 (169)
+.+.|+
T Consensus 71 ~~~~l~ 76 (77)
T TIGR02200 71 VKAKLQ 76 (77)
T ss_pred HHHHhh
Confidence 766664
No 126
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=99.13 E-value=4.2e-10 Score=85.32 Aligned_cols=97 Identities=23% Similarity=0.394 Sum_probs=75.1
Q ss_pred ChhhHHHHHhcC--CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEcCCc
Q 030928 66 TFSSLDDLLQKS--DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGK 143 (169)
Q Consensus 66 ~~~~~~~~~~~~--~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g~ 143 (169)
+.+.|.+.+.+. +..|||+||.+.++.|..+...|..++.+|+. ++|+.|....-+ +...|.+..+||+++|++|.
T Consensus 132 ~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~-vKFvkI~a~~~~-~~~~f~~~~LPtllvYk~G~ 209 (265)
T PF02114_consen 132 SGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE-VKFVKIRASKCP-ASENFPDKNLPTLLVYKNGD 209 (265)
T ss_dssp SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT-SEEEEEEECGCC-TTTTS-TTC-SEEEEEETTE
T ss_pred ChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc-eEEEEEehhccC-cccCCcccCCCEEEEEECCE
Confidence 346677777553 34799999999999999999999999999996 999999987754 78899999999999999999
Q ss_pred eeeeeeCC-------CCHHHHHHHHHhh
Q 030928 144 PSDRFEGA-------FSKDQLIQRIENS 164 (169)
Q Consensus 144 ~~~~~~G~-------~~~~~l~~~i~~~ 164 (169)
++..+.|. ....+|+.+|.++
T Consensus 210 l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 210 LIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp EEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred EEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 99888763 3456777777543
No 127
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=99.13 E-value=3.9e-10 Score=76.76 Aligned_cols=81 Identities=27% Similarity=0.525 Sum_probs=54.1
Q ss_pred HHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhC---CCCCCcEEEEEc-CCcee
Q 030928 70 LDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTY---RIEALPTFILFK-DGKPS 145 (169)
Q Consensus 70 ~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~---~v~~~Pt~~~~~-~g~~~ 145 (169)
...+....++..++.|..+|||.|++..|.+.++++..+ ++.+-.+..|++.++..+| |...+|++++++ +|+++
T Consensus 33 ~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p-~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~~l 111 (129)
T PF14595_consen 33 IEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANP-NIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGKEL 111 (129)
T ss_dssp HHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T-TEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EE
T ss_pred HHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC-CCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCCEe
Confidence 333333345678888999999999999999999999976 4777777888888877765 688999999995 78888
Q ss_pred eeeeCC
Q 030928 146 DRFEGA 151 (169)
Q Consensus 146 ~~~~G~ 151 (169)
.++...
T Consensus 112 g~wger 117 (129)
T PF14595_consen 112 GRWGER 117 (129)
T ss_dssp EEEESS
T ss_pred EEEcCC
Confidence 776554
No 128
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.10 E-value=5.4e-10 Score=77.33 Aligned_cols=70 Identities=30% Similarity=0.698 Sum_probs=58.2
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCC---eEEEEEeCCCc-------------------------hhHHHhC
Q 030928 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDK---IQVVKIDTEKY-------------------------PQIADTY 128 (169)
Q Consensus 77 ~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~---v~~~~v~~d~~-------------------------~~l~~~~ 128 (169)
.+|.+.++|-|.||++||.+-|.+.++.++..+. +.++-|+.|.. ++++++|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 4789999999999999999999999999988765 66666665542 2677899
Q ss_pred CCCCCcEEEEEc-CCceee
Q 030928 129 RIEALPTFILFK-DGKPSD 146 (169)
Q Consensus 129 ~v~~~Pt~~~~~-~g~~~~ 146 (169)
+|.++|++++.+ +|+++.
T Consensus 112 ~v~~iP~l~i~~~dG~~v~ 130 (157)
T KOG2501|consen 112 EVKGIPALVILKPDGTVVT 130 (157)
T ss_pred ccCcCceeEEecCCCCEeh
Confidence 999999999886 887764
No 129
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=99.07 E-value=6.2e-09 Score=69.59 Aligned_cols=95 Identities=15% Similarity=0.147 Sum_probs=72.9
Q ss_pred hHHHHHhcCCCcEEEEEEcC----CChhhhhhh--HHHHHHHHHhcCCeEEEEEeCCC--chhHHHhCCCCCCcEEEEE-
Q 030928 69 SLDDLLQKSDKPVLVDFYAT----WCGPCQYMA--PILNEVGAALKDKIQVVKIDTEK--YPQIADTYRIEALPTFILF- 139 (169)
Q Consensus 69 ~~~~~~~~~~~~vvv~f~~~----~C~~C~~~~--~~l~~~~~~~~~~v~~~~v~~d~--~~~l~~~~~v~~~Pt~~~~- 139 (169)
+..+..++..|.++|++|++ ||..|+... |.+.++.+ .++.+...|++. ...++..+++.++|++.++
T Consensus 8 eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln---~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~ 84 (116)
T cd02991 8 QALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYIN---TRMLFWACSVAKPEGYRVSQALRERTYPFLAMIM 84 (116)
T ss_pred HHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHH---cCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEE
Confidence 33344456689999999999 899997654 34444443 357777888764 4578899999999999888
Q ss_pred --c-CCceeeeeeCCCCHHHHHHHHHhhhc
Q 030928 140 --K-DGKPSDRFEGAFSKDQLIQRIENSLS 166 (169)
Q Consensus 140 --~-~g~~~~~~~G~~~~~~l~~~i~~~l~ 166 (169)
. +.+++.+..|..+++++...|+.+++
T Consensus 85 ~~~~~~~vv~~i~G~~~~~~ll~~L~~~~~ 114 (116)
T cd02991 85 LKDNRMTIVGRLEGLIQPEDLINRLTFIMD 114 (116)
T ss_pred ecCCceEEEEEEeCCCCHHHHHHHHHHHHh
Confidence 3 44578999999999999999988765
No 130
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.06 E-value=5.3e-11 Score=86.73 Aligned_cols=99 Identities=27% Similarity=0.520 Sum_probs=87.9
Q ss_pred ecccCChhhHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCCchhHHHhCCCCCCcEEEEE
Q 030928 61 EAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEKYPQIADTYRIEALPTFILF 139 (169)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~ 139 (169)
.+..++.+++.+++ ..-+++.|+++||+.|+...+.|+.++.--.| .+.+..||+..++.+.-+|-|...|||+-.
T Consensus 25 ~~~~~~eenw~~~l---~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIYHv 101 (248)
T KOG0913|consen 25 KLTRIDEENWKELL---TGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIYHV 101 (248)
T ss_pred eeEEecccchhhhh---chHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEEEe
Confidence 67778889999887 34689999999999999999999999887655 588999999999999999999999999999
Q ss_pred cCCceeeeeeCCCCHHHHHHHHHh
Q 030928 140 KDGKPSDRFEGAFSKDQLIQRIEN 163 (169)
Q Consensus 140 ~~g~~~~~~~G~~~~~~l~~~i~~ 163 (169)
++|+.. ||.|.++..+++.++..
T Consensus 102 kDGeFr-rysgaRdk~dfisf~~~ 124 (248)
T KOG0913|consen 102 KDGEFR-RYSGARDKNDFISFEEH 124 (248)
T ss_pred eccccc-cccCcccchhHHHHHHh
Confidence 999854 89999999999998854
No 131
>PF13728 TraF: F plasmid transfer operon protein
Probab=99.05 E-value=3.4e-09 Score=78.19 Aligned_cols=82 Identities=28% Similarity=0.393 Sum_probs=68.7
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCC-----------CchhHHHhCCCCCCcEEEEEc-CC-ce
Q 030928 78 DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTE-----------KYPQIADTYRIEALPTFILFK-DG-KP 144 (169)
Q Consensus 78 ~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d-----------~~~~l~~~~~v~~~Pt~~~~~-~g-~~ 144 (169)
++.-+++||.++|++|+.+.|.+..++++|+ +.++.|+.| .+.++++++||..+|++++++ ++ +.
T Consensus 120 ~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg--~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~~ 197 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQAPILQQFADKYG--FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKKW 197 (215)
T ss_pred hCeEEEEEEcCCCchhHHHHHHHHHHHHHhC--CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCeE
Confidence 6788999999999999999999999999994 666666666 357899999999999999886 44 45
Q ss_pred eeeeeCCCCHHHHHHHH
Q 030928 145 SDRFEGAFSKDQLIQRI 161 (169)
Q Consensus 145 ~~~~~G~~~~~~l~~~i 161 (169)
...-.|..+.++|.+.|
T Consensus 198 ~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 198 YPVSQGFMSLDELEDRI 214 (215)
T ss_pred EEEeeecCCHHHHHHhh
Confidence 55568999999988754
No 132
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=99.04 E-value=1.2e-09 Score=81.65 Aligned_cols=80 Identities=15% Similarity=0.318 Sum_probs=61.3
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEE--e--------------------------------------
Q 030928 78 DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKI--D-------------------------------------- 117 (169)
Q Consensus 78 ~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v--~-------------------------------------- 117 (169)
++.+++.|..+.||+|+++.+.+.++.+. .+.+..+ .
T Consensus 107 ~k~~I~vFtDp~CpyCkkl~~~l~~~~~~---~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~ 183 (232)
T PRK10877 107 EKHVITVFTDITCGYCHKLHEQMKDYNAL---GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPAS 183 (232)
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHHhcC---CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCccc
Confidence 67889999999999999999998887542 2433322 1
Q ss_pred ----CCCchhHHHhCCCCCCcEEEEEcCCceeeeeeCCCCHHHHHHHHHhh
Q 030928 118 ----TEKYPQIADTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENS 164 (169)
Q Consensus 118 ----~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~~~ 164 (169)
++++.++++++||+|+|+++ +.||+. +.|..+.++|.++|++.
T Consensus 184 c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~---~~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 184 CDVDIADHYALGVQFGVQGTPAIV-LSNGTL---VPGYQGPKEMKAFLDEH 230 (232)
T ss_pred ccchHHHhHHHHHHcCCccccEEE-EcCCeE---eeCCCCHHHHHHHHHHc
Confidence 11233677889999999988 668874 48999999999999864
No 133
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=99.04 E-value=8.3e-09 Score=68.29 Aligned_cols=100 Identities=19% Similarity=0.336 Sum_probs=81.4
Q ss_pred hhhHHHHHh-cCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEcCCcee
Q 030928 67 FSSLDDLLQ-KSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPS 145 (169)
Q Consensus 67 ~~~~~~~~~-~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g~~~ 145 (169)
..+.++.+. ...+.+|+.|...|-|.|.++...|.++++...+-..++.||+++-+++.+.|++...|++++|.+++.+
T Consensus 11 ~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~kHm 90 (142)
T KOG3414|consen 11 GWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNKHM 90 (142)
T ss_pred HHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEEcCceE
Confidence 344555554 3478999999999999999999999999999988788999999999999999999999999999887766
Q ss_pred eeeeCCC----------CHHHHHHHHHhhhc
Q 030928 146 DRFEGAF----------SKDQLIQRIENSLS 166 (169)
Q Consensus 146 ~~~~G~~----------~~~~l~~~i~~~l~ 166 (169)
..-.|.. +.+++.+.++.+.+
T Consensus 91 kiD~gtgdn~Kin~~~~~kq~~Idiie~iyR 121 (142)
T KOG3414|consen 91 KIDLGTGDNNKINFAFEDKQEFIDIIETIYR 121 (142)
T ss_pred EEeeCCCCCceEEEEeccHHHHHHHHHHHHH
Confidence 4443332 46777777776654
No 134
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=99.04 E-value=1.6e-09 Score=63.25 Aligned_cols=60 Identities=35% Similarity=0.791 Sum_probs=51.4
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHH---hCCCCCCcEEEEEcCC
Q 030928 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIAD---TYRIEALPTFILFKDG 142 (169)
Q Consensus 82 vv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~---~~~v~~~Pt~~~~~~g 142 (169)
++.||..||++|+.+.+.+.++ ....+++.+..++++...+... .+++.++|++++++.|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 4789999999999999999998 4444569999999998877665 8999999999999766
No 135
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=99.03 E-value=1.7e-09 Score=67.74 Aligned_cols=60 Identities=22% Similarity=0.418 Sum_probs=46.7
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCch-----hHHHhCCCCCCcEEEEEcCCcee
Q 030928 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYP-----QIADTYRIEALPTFILFKDGKPS 145 (169)
Q Consensus 82 vv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~-----~l~~~~~v~~~Pt~~~~~~g~~~ 145 (169)
++.|+++||++|+.+++.|+++. .++.+.++.++.+.+. .+.+.+|+.++|++++ +|+.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~~i 65 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI--NGKFI 65 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEEE
Confidence 46899999999999999999876 3334778888876543 2566789999999866 77643
No 136
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.02 E-value=1.3e-09 Score=74.97 Aligned_cols=43 Identities=35% Similarity=0.434 Sum_probs=37.4
Q ss_pred CCCcEEEEEEcCCChh-hhhhhHHHHHHHHHhcC----CeEEEEEeCC
Q 030928 77 SDKPVLVDFYATWCGP-CQYMAPILNEVGAALKD----KIQVVKIDTE 119 (169)
Q Consensus 77 ~~~~vvv~f~~~~C~~-C~~~~~~l~~~~~~~~~----~v~~~~v~~d 119 (169)
.+++++|.||++||+. |....+.+.++..++.+ ++.++.|..|
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 4789999999999997 99999999999998865 3888888764
No 137
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.02 E-value=2.9e-09 Score=73.04 Aligned_cols=77 Identities=14% Similarity=0.210 Sum_probs=61.2
Q ss_pred CCCcEEEEEE-cCCChhhhhhhHHHHHHHHHhc-CCeEEEEEeCCC----------------------chhHHHhCCCCC
Q 030928 77 SDKPVLVDFY-ATWCGPCQYMAPILNEVGAALK-DKIQVVKIDTEK----------------------YPQIADTYRIEA 132 (169)
Q Consensus 77 ~~~~vvv~f~-~~~C~~C~~~~~~l~~~~~~~~-~~v~~~~v~~d~----------------------~~~l~~~~~v~~ 132 (169)
.+++++|+|| +.||+.|....+.+.++.+++. +++.++.|..+. ...+.+.||+..
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~~~ 100 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVLI 100 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCCcc
Confidence 4789999999 7899999999999999999884 358888886543 235667788887
Q ss_pred Cc---------EEEEEc-CCceeeeeeCCCC
Q 030928 133 LP---------TFILFK-DGKPSDRFEGAFS 153 (169)
Q Consensus 133 ~P---------t~~~~~-~g~~~~~~~G~~~ 153 (169)
.| ++++++ +|+++.++.|...
T Consensus 101 ~~~~~~~~~~p~~~lid~~g~i~~~~~~~~~ 131 (140)
T cd02971 101 EKSAGGGLAARATFIIDPDGKIRYVEVEPLP 131 (140)
T ss_pred ccccccCceeEEEEEECCCCcEEEEEecCCC
Confidence 76 666665 8999999988765
No 138
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.02 E-value=2.5e-09 Score=77.01 Aligned_cols=42 Identities=19% Similarity=0.229 Sum_probs=37.0
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCC
Q 030928 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTE 119 (169)
Q Consensus 77 ~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~d 119 (169)
.++++||.|||+||+.|+ .++.|+++.++|++ .+.++.+.|+
T Consensus 24 ~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred CCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeecc
Confidence 479999999999999997 58899999999975 4889999874
No 139
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.01 E-value=4.9e-09 Score=76.78 Aligned_cols=90 Identities=13% Similarity=0.151 Sum_probs=68.2
Q ss_pred CCCcEEE-EEEcCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC---------------------------chhHHHh
Q 030928 77 SDKPVLV-DFYATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEK---------------------------YPQIADT 127 (169)
Q Consensus 77 ~~~~vvv-~f~~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~d~---------------------------~~~l~~~ 127 (169)
.++.+++ .||+.||+.|....+.|.++..++.+ ++.++.|.+|. +..+++.
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ 105 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELARE 105 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHH
Confidence 3565554 68999999999999999999988874 47777776552 2356677
Q ss_pred CCCC------CCcEEEEEc-CCceeeee----eCCCCHHHHHHHHHhhhc
Q 030928 128 YRIE------ALPTFILFK-DGKPSDRF----EGAFSKDQLIQRIENSLS 166 (169)
Q Consensus 128 ~~v~------~~Pt~~~~~-~g~~~~~~----~G~~~~~~l~~~i~~~l~ 166 (169)
||+. .+|+.++++ +|++.... .+..+.+++.+.|+.+..
T Consensus 106 ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~~ 155 (202)
T PRK13190 106 YNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQV 155 (202)
T ss_pred cCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhh
Confidence 8884 589988886 88887655 455788999998887653
No 140
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.00 E-value=4.3e-09 Score=76.07 Aligned_cols=88 Identities=14% Similarity=0.180 Sum_probs=67.9
Q ss_pred CCCcEEEEEE-cCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC-------------------------chhHHHhCC
Q 030928 77 SDKPVLVDFY-ATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEK-------------------------YPQIADTYR 129 (169)
Q Consensus 77 ~~~~vvv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~d~-------------------------~~~l~~~~~ 129 (169)
.++++|++|| +.||+.|....+.+.+...++.+ ++.++.|..|. +..+++.||
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg 109 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 109 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence 4778999999 99999999999999999999864 46777776543 346778899
Q ss_pred C----CCC--cEEEEEc-CCceeeeeeC----CCCHHHHHHHHHhh
Q 030928 130 I----EAL--PTFILFK-DGKPSDRFEG----AFSKDQLIQRIENS 164 (169)
Q Consensus 130 v----~~~--Pt~~~~~-~g~~~~~~~G----~~~~~~l~~~i~~~ 164 (169)
+ .++ |+.++++ +|++...+.. ..+.+++.+.|+.+
T Consensus 110 v~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~al 155 (187)
T PRK10382 110 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA 155 (187)
T ss_pred CCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhh
Confidence 8 366 8888886 9998776643 24778888877554
No 141
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.95 E-value=8.4e-09 Score=65.11 Aligned_cols=76 Identities=14% Similarity=0.242 Sum_probs=58.2
Q ss_pred EEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCc----hhHHHhCC--CCCCcEEEEEcCCceeeeeeCCCCH
Q 030928 81 VLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKY----PQIADTYR--IEALPTFILFKDGKPSDRFEGAFSK 154 (169)
Q Consensus 81 vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~----~~l~~~~~--v~~~Pt~~~~~~g~~~~~~~G~~~~ 154 (169)
-++.|+.+||++|++..+.|+++..++. ++.+..+|++++ .++.+.++ +..+|++++ +|+.+. ..
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~-~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi--~g~~ig------g~ 72 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERD-DFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV--DQKHIG------GC 72 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhccccc-CCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE--CCEEEc------CH
Confidence 3678999999999999999999998764 488888888764 35555554 589999876 787543 35
Q ss_pred HHHHHHHHhhh
Q 030928 155 DQLIQRIENSL 165 (169)
Q Consensus 155 ~~l~~~i~~~l 165 (169)
+++.+++++.+
T Consensus 73 ~~~~~~~~~~~ 83 (85)
T PRK11200 73 TDFEAYVKENL 83 (85)
T ss_pred HHHHHHHHHhc
Confidence 77777777654
No 142
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=1.2e-09 Score=79.01 Aligned_cols=81 Identities=30% Similarity=0.646 Sum_probs=69.6
Q ss_pred hHHHHH-hcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCCchhHHHhCCCC------CCcEEEEEc
Q 030928 69 SLDDLL-QKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEKYPQIADTYRIE------ALPTFILFK 140 (169)
Q Consensus 69 ~~~~~~-~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~d~~~~l~~~~~v~------~~Pt~~~~~ 140 (169)
.+++.+ .+..+.++|.|++.|.+.|++..|.+.++..+|.. .++|++||+-..++.+.+|+|. ..||+++|+
T Consensus 134 ~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~srQLPT~ilFq 213 (265)
T KOG0914|consen 134 LEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSRQLPTYILFQ 213 (265)
T ss_pred hHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCcccccCCeEEEEc
Confidence 333333 35577999999999999999999999999999985 5999999999999999999876 789999999
Q ss_pred CCceeeeee
Q 030928 141 DGKPSDRFE 149 (169)
Q Consensus 141 ~g~~~~~~~ 149 (169)
+|+++.|..
T Consensus 214 ~gkE~~RrP 222 (265)
T KOG0914|consen 214 KGKEVSRRP 222 (265)
T ss_pred cchhhhcCc
Confidence 999887654
No 143
>PRK15000 peroxidase; Provisional
Probab=98.95 E-value=1.3e-08 Score=74.33 Aligned_cols=88 Identities=16% Similarity=0.276 Sum_probs=68.6
Q ss_pred CCCcEEEEEEc-CCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC----------------------------chhHHH
Q 030928 77 SDKPVLVDFYA-TWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEK----------------------------YPQIAD 126 (169)
Q Consensus 77 ~~~~vvv~f~~-~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~d~----------------------------~~~l~~ 126 (169)
.+++++++||. .||+.|....+.+.+++.++.+ ++.++.|.+|. ..++++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 47899999998 5999999999999999999874 47788776653 225566
Q ss_pred hCCCC------CCcEEEEEc-CCceeeeeeCC----CCHHHHHHHHHhh
Q 030928 127 TYRIE------ALPTFILFK-DGKPSDRFEGA----FSKDQLIQRIENS 164 (169)
Q Consensus 127 ~~~v~------~~Pt~~~~~-~g~~~~~~~G~----~~~~~l~~~i~~~ 164 (169)
.||+. .+|+.++++ +|++...+.|. .+.+++.+.|+.+
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al 161 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDAL 161 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 78887 689988886 99988877653 4677777777654
No 144
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.93 E-value=7.4e-09 Score=72.61 Aligned_cols=81 Identities=28% Similarity=0.507 Sum_probs=54.2
Q ss_pred ChhhHHHHHhcCCCcEEEEEEcCCChhhhhhhHH-H--HHHHHHhcCCeEEEEEeCCCchhHHHhC--------CCCCCc
Q 030928 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPI-L--NEVGAALKDKIQVVKIDTEKYPQIADTY--------RIEALP 134 (169)
Q Consensus 66 ~~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~-l--~~~~~~~~~~v~~~~v~~d~~~~l~~~~--------~v~~~P 134 (169)
+.+.+... +..+|+++|.++.+||..|+.|... + .+++..++..+.-+.||.++.+++...| |..|+|
T Consensus 26 ~~ea~~~A-k~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwP 104 (163)
T PF03190_consen 26 GEEALEKA-KKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWP 104 (163)
T ss_dssp SHHHHHHH-HHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SS
T ss_pred CHHHHHHH-HhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCC
Confidence 33445554 4558899999999999999988763 3 5566666656888899999999998887 899999
Q ss_pred EEEEEc-CCceeee
Q 030928 135 TFILFK-DGKPSDR 147 (169)
Q Consensus 135 t~~~~~-~g~~~~~ 147 (169)
+.+|.. +|+.+..
T Consensus 105 l~vfltPdg~p~~~ 118 (163)
T PF03190_consen 105 LTVFLTPDGKPFFG 118 (163)
T ss_dssp EEEEE-TTS-EEEE
T ss_pred ceEEECCCCCeeee
Confidence 988885 8887654
No 145
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.93 E-value=1.5e-08 Score=67.68 Aligned_cols=78 Identities=18% Similarity=0.533 Sum_probs=53.3
Q ss_pred ChhhHHHHHhc---CCCcEEEEEEc-------CCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCc-------hhHHH--
Q 030928 66 TFSSLDDLLQK---SDKPVLVDFYA-------TWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKY-------PQIAD-- 126 (169)
Q Consensus 66 ~~~~~~~~~~~---~~~~vvv~f~~-------~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~-------~~l~~-- 126 (169)
..++|.+.+.. .+++++|+|++ +|||.|+...|.+++.....+++..++.|.+-.. ..+-.
T Consensus 4 gy~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p 83 (119)
T PF06110_consen 4 GYDEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDP 83 (119)
T ss_dssp CHHHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--
T ss_pred CHHHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcc
Confidence 34566766654 46889999985 4999999999999998888776788888876332 23333
Q ss_pred hCCCCCCcEEEEEcCCc
Q 030928 127 TYRIEALPTFILFKDGK 143 (169)
Q Consensus 127 ~~~v~~~Pt~~~~~~g~ 143 (169)
++++.++||++-+..++
T Consensus 84 ~~~l~~IPTLi~~~~~~ 100 (119)
T PF06110_consen 84 DLKLKGIPTLIRWETGE 100 (119)
T ss_dssp CC---SSSEEEECTSS-
T ss_pred eeeeeecceEEEECCCC
Confidence 59999999999997664
No 146
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.91 E-value=1.6e-08 Score=84.45 Aligned_cols=79 Identities=19% Similarity=0.411 Sum_probs=68.9
Q ss_pred CCcE-EEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEcCCceeeeeeCCCCHHH
Q 030928 78 DKPV-LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSDRFEGAFSKDQ 156 (169)
Q Consensus 78 ~~~v-vv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~ 156 (169)
++++ +-.|.+++|++|......+++++.+.+ ++..-.+|..+.++++++|+|.++|++++ ||+++ +.|..+.++
T Consensus 475 ~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~-~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~~~~~--~~G~~~~~~ 549 (555)
T TIGR03143 475 TKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP-NVEAEMIDVSHFPDLKDEYGIMSVPAIVV--DDQQV--YFGKKTIEE 549 (555)
T ss_pred CCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC-CceEEEEECcccHHHHHhCCceecCEEEE--CCEEE--EeeCCCHHH
Confidence 4454 556789999999999999999999987 48899999999999999999999999999 88765 568889999
Q ss_pred HHHHH
Q 030928 157 LIQRI 161 (169)
Q Consensus 157 l~~~i 161 (169)
+.++|
T Consensus 550 ~~~~~ 554 (555)
T TIGR03143 550 MLELI 554 (555)
T ss_pred HHHhh
Confidence 98876
No 147
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.89 E-value=2.8e-08 Score=73.40 Aligned_cols=88 Identities=9% Similarity=0.165 Sum_probs=66.6
Q ss_pred CCCc-EEEEEEcCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCCc---------------------------hhHHHh
Q 030928 77 SDKP-VLVDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEKY---------------------------PQIADT 127 (169)
Q Consensus 77 ~~~~-vvv~f~~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~d~~---------------------------~~l~~~ 127 (169)
.+++ +|+.||+.||+.|....+.+.++..++.+ ++.++.|.+|.. ..+++.
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~ 106 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ 106 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence 3555 46789999999999999999999999864 478888876642 255667
Q ss_pred CCCC-------CCcEEEEEc-CCceeeeeeC----CCCHHHHHHHHHhh
Q 030928 128 YRIE-------ALPTFILFK-DGKPSDRFEG----AFSKDQLIQRIENS 164 (169)
Q Consensus 128 ~~v~-------~~Pt~~~~~-~g~~~~~~~G----~~~~~~l~~~i~~~ 164 (169)
||+. .+|+.++++ +|++...+.. ..+.+++.+.|+.+
T Consensus 107 yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 107 LGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred cCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 8873 579988886 8988766532 34678888888764
No 148
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.89 E-value=3.7e-08 Score=74.18 Aligned_cols=87 Identities=26% Similarity=0.310 Sum_probs=72.0
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCc-----------hhHHHhCCCCCCcEEEEEc-C-Cce
Q 030928 78 DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKY-----------PQIADTYRIEALPTFILFK-D-GKP 144 (169)
Q Consensus 78 ~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~-----------~~l~~~~~v~~~Pt~~~~~-~-g~~ 144 (169)
++.-+++||...|++|+.+.|.+..++++|+ +.++.|++|.. ..+++++||..+|+++++. + ++.
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~yg--i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~ 227 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEYG--ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKM 227 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcE
Confidence 5688999999999999999999999999996 66666666643 5688999999999988885 4 455
Q ss_pred eeeeeCCCCHHHHHHHHHhhhc
Q 030928 145 SDRFEGAFSKDQLIQRIENSLS 166 (169)
Q Consensus 145 ~~~~~G~~~~~~l~~~i~~~l~ 166 (169)
...-.|..+.++|.+.|..+..
T Consensus 228 ~pv~~G~iS~deL~~Ri~~v~~ 249 (256)
T TIGR02739 228 SPLAYGFISQDELKERILNVLT 249 (256)
T ss_pred EEEeeccCCHHHHHHHHHHHHh
Confidence 5555799999999998877654
No 149
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.88 E-value=4.1e-08 Score=71.96 Aligned_cols=85 Identities=9% Similarity=0.175 Sum_probs=63.4
Q ss_pred cEEEEEEcCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC---------------------------chhHHHhCCCC
Q 030928 80 PVLVDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEK---------------------------YPQIADTYRIE 131 (169)
Q Consensus 80 ~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~d~---------------------------~~~l~~~~~v~ 131 (169)
.+|+.||+.||+.|....+.|.++++++.+ ++.++.|++|. ...+++.||+.
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~ 107 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMI 107 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCc
Confidence 456689999999999999999999999874 47888887664 23567788876
Q ss_pred ----CCc----EEEEEc-CCceeeeeeC----CCCHHHHHHHHHhh
Q 030928 132 ----ALP----TFILFK-DGKPSDRFEG----AFSKDQLIQRIENS 164 (169)
Q Consensus 132 ----~~P----t~~~~~-~g~~~~~~~G----~~~~~~l~~~i~~~ 164 (169)
+.| +.++++ +|++...+.+ ..+.+++.+.|+.+
T Consensus 108 ~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~l 153 (203)
T cd03016 108 DPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDAL 153 (203)
T ss_pred cccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 333 456664 9998877765 34677888888664
No 150
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.87 E-value=7.9e-09 Score=73.47 Aligned_cols=84 Identities=26% Similarity=0.412 Sum_probs=75.5
Q ss_pred ChhhHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEcCCcee
Q 030928 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPS 145 (169)
Q Consensus 66 ~~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g~~~ 145 (169)
++.+|.+.+.. ...||++||-+.-..|+-|...|+.+++.+-+ ..|+.||....+=++.+++|..+|++.+|+||..+
T Consensus 73 ~Ekdf~~~~~k-S~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e-TrFikvnae~~PFlv~kL~IkVLP~v~l~k~g~~~ 150 (211)
T KOG1672|consen 73 SEKDFFEEVKK-SEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE-TRFIKVNAEKAPFLVTKLNIKVLPTVALFKNGKTV 150 (211)
T ss_pred cHHHHHHHhhc-CceEEEEEEcCCCcceehHHHHHHHHHHhccc-ceEEEEecccCceeeeeeeeeEeeeEEEEEcCEEE
Confidence 45677777644 45799999999999999999999999999886 99999999999999999999999999999999999
Q ss_pred eeeeCC
Q 030928 146 DRFEGA 151 (169)
Q Consensus 146 ~~~~G~ 151 (169)
.++.|.
T Consensus 151 D~iVGF 156 (211)
T KOG1672|consen 151 DYVVGF 156 (211)
T ss_pred EEEeeH
Confidence 888875
No 151
>PRK13189 peroxiredoxin; Provisional
Probab=98.85 E-value=4.9e-08 Score=72.49 Aligned_cols=89 Identities=10% Similarity=0.160 Sum_probs=65.8
Q ss_pred CCC-cEEEEEEcCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC---------------------------chhHHHh
Q 030928 77 SDK-PVLVDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEK---------------------------YPQIADT 127 (169)
Q Consensus 77 ~~~-~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~d~---------------------------~~~l~~~ 127 (169)
.++ .+|+.||+.||+.|....+.+.+++.++.+ ++.++.|.+|. ..++++.
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ 113 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK 113 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence 356 455678899999999999999999998864 47777776553 2356677
Q ss_pred CCCC-------CCcEEEEEc-CCceeeeee----CCCCHHHHHHHHHhhh
Q 030928 128 YRIE-------ALPTFILFK-DGKPSDRFE----GAFSKDQLIQRIENSL 165 (169)
Q Consensus 128 ~~v~-------~~Pt~~~~~-~g~~~~~~~----G~~~~~~l~~~i~~~l 165 (169)
||+. .+|+.++++ +|++..... ...+.+++.+.|+.+.
T Consensus 114 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq 163 (222)
T PRK13189 114 LGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKALQ 163 (222)
T ss_pred hCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 8875 468888886 998876665 3456788888887653
No 152
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=98.84 E-value=1.1e-08 Score=74.62 Aligned_cols=76 Identities=21% Similarity=0.286 Sum_probs=55.9
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEE--eC-------------------------------------
Q 030928 78 DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKI--DT------------------------------------- 118 (169)
Q Consensus 78 ~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v--~~------------------------------------- 118 (169)
+++.++.|+.++|++|+++.+.+.+ ..+++.+..+ ..
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~----~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~ 152 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKP----NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAA 152 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhh----ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCcc
Confidence 5789999999999999999998877 2223333322 11
Q ss_pred ------CCchhHHHhCCCCCCcEEEEEcCCceeeeeeCCCCHHHHHHHH
Q 030928 119 ------EKYPQIADTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRI 161 (169)
Q Consensus 119 ------d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i 161 (169)
+++.++++++||+++|+++ +++|+. ..|..+.+++.++|
T Consensus 153 ~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~---~~G~~~~~~l~~~L 197 (197)
T cd03020 153 SCDNPVAANLALGRQLGVNGTPTIV-LADGRV---VPGAPPAAQLEALL 197 (197)
T ss_pred ccCchHHHHHHHHHHcCCCcccEEE-ECCCeE---ecCCCCHHHHHhhC
Confidence 1133677789999999987 777875 57888888887764
No 153
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=98.80 E-value=1.1e-07 Score=72.02 Aligned_cols=88 Identities=13% Similarity=0.166 Sum_probs=66.3
Q ss_pred CCCcEEEEEE-cCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC----------------------------chhHHH
Q 030928 77 SDKPVLVDFY-ATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEK----------------------------YPQIAD 126 (169)
Q Consensus 77 ~~~~vvv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~d~----------------------------~~~l~~ 126 (169)
.++++|++|| +.||+.|....+.+.+..+++.+ ++.++.|.+|. +.++++
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak 176 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK 176 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence 3567777777 89999999999999999998864 47777776553 235677
Q ss_pred hCCCC-----CCcEEEEEc-CCceeeeee----CCCCHHHHHHHHHhh
Q 030928 127 TYRIE-----ALPTFILFK-DGKPSDRFE----GAFSKDQLIQRIENS 164 (169)
Q Consensus 127 ~~~v~-----~~Pt~~~~~-~g~~~~~~~----G~~~~~~l~~~i~~~ 164 (169)
.||+. ..|+.++++ +|++...+. ...+.+++.+.|+.+
T Consensus 177 ayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 177 SFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred HcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 89985 479988886 999887663 334778888877654
No 154
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.78 E-value=1.2e-07 Score=67.84 Aligned_cols=102 Identities=21% Similarity=0.403 Sum_probs=81.7
Q ss_pred cccCChhhHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCC--CCcEEEEE
Q 030928 62 AKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIE--ALPTFILF 139 (169)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~--~~Pt~~~~ 139 (169)
+..++.+++..+......++++.|..........+...+.++++++.+++.|+.+|++..+.+++.+|+. .+|+++++
T Consensus 79 v~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~~~~P~~vi~ 158 (184)
T PF13848_consen 79 VPELTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGIDEDDLPALVIF 158 (184)
T ss_dssp CEEESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTTTTSSSSEEEEE
T ss_pred ccccchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCCCCccCCEEEEE
Confidence 3455666777776443334777787777888899999999999999999999999999989999999998 99999999
Q ss_pred c--CCceeeeeeCCCCHHHHHHHHHh
Q 030928 140 K--DGKPSDRFEGAFSKDQLIQRIEN 163 (169)
Q Consensus 140 ~--~g~~~~~~~G~~~~~~l~~~i~~ 163 (169)
+ +++......|..+.+.|.+|+++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 159 DSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp ETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred ECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 6 45543334889999999999874
No 155
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=98.77 E-value=4.6e-08 Score=73.90 Aligned_cols=82 Identities=17% Similarity=0.218 Sum_probs=59.7
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeC---------------------------------------
Q 030928 78 DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDT--------------------------------------- 118 (169)
Q Consensus 78 ~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~--------------------------------------- 118 (169)
++.+++.|..+.||+|+++.+.+.++.+. +++.+..+..
T Consensus 117 ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~ 194 (251)
T PRK11657 117 APRIVYVFADPNCPYCKQFWQQARPWVDS--GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPP 194 (251)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHhhc--CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCcc
Confidence 56789999999999999999998877654 2344333210
Q ss_pred -----------CCchhHHHhCCCCCCcEEEEEc-CCceeeeeeCCCCHHHHHHHHH
Q 030928 119 -----------EKYPQIADTYRIEALPTFILFK-DGKPSDRFEGAFSKDQLIQRIE 162 (169)
Q Consensus 119 -----------d~~~~l~~~~~v~~~Pt~~~~~-~g~~~~~~~G~~~~~~l~~~i~ 162 (169)
+++..+.+++||+|+|++++-+ +|+ +....|..+.++|.+.+.
T Consensus 195 ~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~-~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 195 ASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGT-LQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCC-EEEecCCCCHHHHHHHhC
Confidence 0012466779999999988876 454 345789999999988874
No 156
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.77 E-value=6.7e-08 Score=58.48 Aligned_cols=67 Identities=16% Similarity=0.368 Sum_probs=47.1
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhC----CCCCCcEEEEEcCCceeeeeeCCCCHHHH
Q 030928 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTY----RIEALPTFILFKDGKPSDRFEGAFSKDQL 157 (169)
Q Consensus 82 vv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~----~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l 157 (169)
++.|+.+||++|+.++..+.+. ++.+..++++.+.+..+++ ++.++|++++ +|+ .+ +..+.+++
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~~---~i-~g~~~~~l 69 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GDE---HL-SGFRPDKL 69 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CCE---EE-ecCCHHHH
Confidence 5779999999999988877652 3667778887765544443 7899999876 553 22 33566666
Q ss_pred HHH
Q 030928 158 IQR 160 (169)
Q Consensus 158 ~~~ 160 (169)
.++
T Consensus 70 ~~~ 72 (73)
T cd02976 70 RAL 72 (73)
T ss_pred Hhh
Confidence 654
No 157
>PRK13191 putative peroxiredoxin; Provisional
Probab=98.77 E-value=1.3e-07 Score=69.80 Aligned_cols=88 Identities=7% Similarity=0.106 Sum_probs=64.9
Q ss_pred CCCcEE-EEEEcCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC---------------------------chhHHHh
Q 030928 77 SDKPVL-VDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEK---------------------------YPQIADT 127 (169)
Q Consensus 77 ~~~~vv-v~f~~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~d~---------------------------~~~l~~~ 127 (169)
.+++++ +.||++||+.|....+.|.+++.++.+ ++.++.|.+|. +.++++.
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ 111 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKR 111 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHH
Confidence 356555 488899999999999999999999864 47788777653 2355667
Q ss_pred CCCC-------CCcEEEEEc-CCceeeeeeCC----CCHHHHHHHHHhh
Q 030928 128 YRIE-------ALPTFILFK-DGKPSDRFEGA----FSKDQLIQRIENS 164 (169)
Q Consensus 128 ~~v~-------~~Pt~~~~~-~g~~~~~~~G~----~~~~~l~~~i~~~ 164 (169)
||+. ..|+.++++ +|++...+.+. .+.+++.+.|+.+
T Consensus 112 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 112 LGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred cCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 8863 368877776 89887765433 4778888888654
No 158
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.77 E-value=1.1e-07 Score=79.00 Aligned_cols=81 Identities=17% Similarity=0.322 Sum_probs=70.7
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEcCCceeeeeeCCCCHHHH
Q 030928 78 DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSDRFEGAFSKDQL 157 (169)
Q Consensus 78 ~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l 157 (169)
+...+-.|+.++|++|......+++++.+.+ ++.+-.+|..++++++++|+|+++|++++ ||+. .+.|..+.+++
T Consensus 116 ~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~-~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~--~~~g~~~~~~~ 190 (517)
T PRK15317 116 GDFHFETYVSLSCHNCPDVVQALNLMAVLNP-NITHTMIDGALFQDEVEARNIMAVPTVFL--NGEE--FGQGRMTLEEI 190 (517)
T ss_pred CCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC-CceEEEEEchhCHhHHHhcCCcccCEEEE--CCcE--EEecCCCHHHH
Confidence 4456888999999999999999999999876 58899999999999999999999999877 7764 46799999888
Q ss_pred HHHHHh
Q 030928 158 IQRIEN 163 (169)
Q Consensus 158 ~~~i~~ 163 (169)
.+.+.+
T Consensus 191 ~~~~~~ 196 (517)
T PRK15317 191 LAKLDT 196 (517)
T ss_pred HHHHhc
Confidence 888865
No 159
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=98.77 E-value=2.2e-07 Score=65.15 Aligned_cols=81 Identities=21% Similarity=0.359 Sum_probs=63.9
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHHHh--cCCeEEEEEeCCCch---------------------------------
Q 030928 78 DKPVLVDFYATWCGPCQYMAPILNEVGAAL--KDKIQVVKIDTEKYP--------------------------------- 122 (169)
Q Consensus 78 ~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~--~~~v~~~~v~~d~~~--------------------------------- 122 (169)
.+++|+.|+...||+|+++.+.+.++.+++ ++++.|+..+.....
T Consensus 12 a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (162)
T PF13462_consen 12 APITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQEN 91 (162)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHCHS
T ss_pred CCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhc
Confidence 578899999999999999999999999998 677888776542100
Q ss_pred -----------------------------------hHHHhCCCCCCcEEEEEcCCceeeeeeCCCCHHHHHHHHHh
Q 030928 123 -----------------------------------QIADTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIEN 163 (169)
Q Consensus 123 -----------------------------------~l~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~~ 163 (169)
..++++||.++||+++ ||+. +.|..+.+++.+.|++
T Consensus 92 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~~---~~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 92 FENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGKY---VVGPYTIEELKELIDK 162 (162)
T ss_dssp TSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTCE---EETTTSHHHHHHHHHH
T ss_pred cchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCEE---eCCCCCHHHHHHHHcC
Confidence 2233579999999999 9985 5789999999999975
No 160
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.76 E-value=5.8e-08 Score=61.45 Aligned_cols=76 Identities=18% Similarity=0.304 Sum_probs=55.7
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCc----hhHHHhCC--CCCCcEEEEEcCCceeeeeeCCCCHH
Q 030928 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKY----PQIADTYR--IEALPTFILFKDGKPSDRFEGAFSKD 155 (169)
Q Consensus 82 vv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~----~~l~~~~~--v~~~Pt~~~~~~g~~~~~~~G~~~~~ 155 (169)
++.|..+|||+|++++..|+++..++.+ +.+..+|.+.. .++.+.+| +..+|.+++ +|+.+ | ..+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~-i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~~i----g--G~~ 72 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERAD-FEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEKHV----G--GCT 72 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCC-CcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCEEe----c--CHH
Confidence 6789999999999999999988766543 66777777643 35666666 379999866 77643 2 357
Q ss_pred HHHHHHHhhhc
Q 030928 156 QLIQRIENSLS 166 (169)
Q Consensus 156 ~l~~~i~~~l~ 166 (169)
+|.+++++...
T Consensus 73 dl~~~~~~~~~ 83 (86)
T TIGR02183 73 DFEQLVKENFD 83 (86)
T ss_pred HHHHHHHhccc
Confidence 78888776543
No 161
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=98.75 E-value=1e-07 Score=66.13 Aligned_cols=79 Identities=28% Similarity=0.457 Sum_probs=58.6
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeC--CC-----------------------------------
Q 030928 78 DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDT--EK----------------------------------- 120 (169)
Q Consensus 78 ~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~--d~----------------------------------- 120 (169)
.++++++|+.++||+|+.+.+.+.++..++++ +.++..+. ..
T Consensus 5 a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~ 83 (154)
T cd03023 5 GDVTIVEFFDYNCGYCKKLAPELEKLLKEDPD-VRVVFKEFPILGESSVLAARVALAVWKNGPGKYLEFHNALMATRGRL 83 (154)
T ss_pred CCEEEEEEECCCChhHHHhhHHHHHHHHHCCC-ceEEEEeCCccCcchHHHHHHHHHHHHhChhHHHHHHHHHHhcCCCC
Confidence 67899999999999999999999998877754 43332211 00
Q ss_pred ----------------------------------chhHHHhCCCCCCcEEEEEcCCceeeeeeCCCCHHHHHHHHH
Q 030928 121 ----------------------------------YPQIADTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIE 162 (169)
Q Consensus 121 ----------------------------------~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~ 162 (169)
+.+++.++||.++||+++ +|+ .+.|..+.+.+.+.|+
T Consensus 84 ~~~~l~~~a~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~gtPt~~v--~g~---~~~G~~~~~~l~~~i~ 154 (154)
T cd03023 84 NEESLLRIAKKAGLDEAKLKKDMDDPEIEATIDKNRQLARALGITGTPAFII--GDT---VIPGAVPADTLKEAID 154 (154)
T ss_pred CHHHHHHHHHHcCCCHHHHHHHhhChHHHHHHHHHHHHHHHcCCCcCCeEEE--CCE---EecCCCCHHHHHHHhC
Confidence 002334689999999888 676 5689999999888763
No 162
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.74 E-value=1.9e-07 Score=70.05 Aligned_cols=87 Identities=17% Similarity=0.243 Sum_probs=70.8
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCC-----------chhHHHhCCCCCCcEEEEEc--CCce
Q 030928 78 DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEK-----------YPQIADTYRIEALPTFILFK--DGKP 144 (169)
Q Consensus 78 ~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~-----------~~~l~~~~~v~~~Pt~~~~~--~g~~ 144 (169)
++.-+++||...|++|+.+.|.+..++++|+ +.++.|++|. +.+.++++||..+|++++++ .++.
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg--~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~ 220 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYG--LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSV 220 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcE
Confidence 5678999999999999999999999999996 5555555543 33567899999999999885 4466
Q ss_pred eeeeeCCCCHHHHHHHHHhhhc
Q 030928 145 SDRFEGAFSKDQLIQRIENSLS 166 (169)
Q Consensus 145 ~~~~~G~~~~~~l~~~i~~~l~ 166 (169)
...-.|..+.++|.+.|..+..
T Consensus 221 ~pv~~G~iS~deL~~Ri~~v~t 242 (248)
T PRK13703 221 RPLSYGFITQDDLAKRFLNVST 242 (248)
T ss_pred EEEeeccCCHHHHHHHHHHHHh
Confidence 6666899999999998877654
No 163
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=98.72 E-value=2.5e-07 Score=60.22 Aligned_cols=93 Identities=26% Similarity=0.360 Sum_probs=67.1
Q ss_pred CChhhHHHHHhcC-CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCch----hHHHhCCCC-CCcEEEE
Q 030928 65 QTFSSLDDLLQKS-DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYP----QIADTYRIE-ALPTFIL 138 (169)
Q Consensus 65 ~~~~~~~~~~~~~-~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~----~l~~~~~v~-~~Pt~~~ 138 (169)
.+.++++++++.+ .++++|+=++++|+...+....+++.....++.+.++.+|+-+++ .++++|||+ .-|-+++
T Consensus 5 ~t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~il 84 (105)
T PF11009_consen 5 TTEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVIL 84 (105)
T ss_dssp -SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEE
T ss_pred CCHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEE
Confidence 3567888888663 678999889999999999999999999998877999999998876 567889987 5699999
Q ss_pred EcCCceeeee-eCCCCHHHH
Q 030928 139 FKDGKPSDRF-EGAFSKDQL 157 (169)
Q Consensus 139 ~~~g~~~~~~-~G~~~~~~l 157 (169)
++||++++.- .+.++.+.|
T Consensus 85 i~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 85 IKNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp EETTEEEEEEEGGG-SHHHH
T ss_pred EECCEEEEECccccCCHHhc
Confidence 9999988654 345566554
No 164
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=98.71 E-value=7.9e-07 Score=59.69 Aligned_cols=98 Identities=21% Similarity=0.343 Sum_probs=75.4
Q ss_pred hhHHHHHh-cCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcE-EEEEcCCcee
Q 030928 68 SSLDDLLQ-KSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPT-FILFKDGKPS 145 (169)
Q Consensus 68 ~~~~~~~~-~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt-~~~~~~g~~~ 145 (169)
-+.++.+. ..++.+++.|..+|-+.|.++...|.+++++..+-..++.||.++-+++.+.|.+. -|. ++||.+|+.+
T Consensus 9 ~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~rnkhm 87 (133)
T PF02966_consen 9 WHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFRNKHM 87 (133)
T ss_dssp HHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEEEEEETTEEE
T ss_pred chHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEEEEEecCeEE
Confidence 34555554 45889999999999999999999999999999887899999999999999999999 775 6666567665
Q ss_pred eeeeCC----------CCHHHHHHHHHhhhc
Q 030928 146 DRFEGA----------FSKDQLIQRIENSLS 166 (169)
Q Consensus 146 ~~~~G~----------~~~~~l~~~i~~~l~ 166 (169)
..-.|. .+.+++.+.++.+.+
T Consensus 88 ~vD~GtgnnnKin~~~~~kqe~iDiie~iyr 118 (133)
T PF02966_consen 88 MVDFGTGNNNKINWAFEDKQEFIDIIETIYR 118 (133)
T ss_dssp EEESSSSSSSSBCS--SCHHHHHHHHHHHHH
T ss_pred EEEecCCCccEEEEEcCcHHHHHHHHHHHHH
Confidence 443332 247888888776543
No 165
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.69 E-value=1.2e-07 Score=62.43 Aligned_cols=75 Identities=23% Similarity=0.510 Sum_probs=57.8
Q ss_pred hhhHHHHHhc--CCCcEEEEEEc--------CCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCC-------chhHHHhCC
Q 030928 67 FSSLDDLLQK--SDKPVLVDFYA--------TWCGPCQYMAPILNEVGAALKDKIQVVKIDTEK-------YPQIADTYR 129 (169)
Q Consensus 67 ~~~~~~~~~~--~~~~vvv~f~~--------~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~-------~~~l~~~~~ 129 (169)
.++|++.+.+ +++.++|+|++ +|||.|.+..|.+.+..+..+.++.|+.|++-+ +..+-...+
T Consensus 12 ~e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~ 91 (128)
T KOG3425|consen 12 YESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPG 91 (128)
T ss_pred HHHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCC
Confidence 3566666543 35569999996 599999999999999988888789999998644 335555667
Q ss_pred C-CCCcEEEEEcC
Q 030928 130 I-EALPTFILFKD 141 (169)
Q Consensus 130 v-~~~Pt~~~~~~ 141 (169)
+ .++||++=+++
T Consensus 92 ~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 92 ILTAVPTLLRWKR 104 (128)
T ss_pred ceeecceeeEEcC
Confidence 6 99999998873
No 166
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.68 E-value=3.1e-07 Score=76.24 Aligned_cols=94 Identities=16% Similarity=0.325 Sum_probs=75.5
Q ss_pred ChhhHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEcCCcee
Q 030928 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPS 145 (169)
Q Consensus 66 ~~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g~~~ 145 (169)
+.+..+.+..-.+...+-.|..+.||+|......+++++.+.+ ++..-.+|..++++++++|+++++|++++ ||+.
T Consensus 105 ~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p-~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~- 180 (515)
T TIGR03140 105 DEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNP-NISHTMIDGALFQDEVEALGIQGVPAVFL--NGEE- 180 (515)
T ss_pred CHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC-CceEEEEEchhCHHHHHhcCCcccCEEEE--CCcE-
Confidence 3343333332234556888999999999999999999999987 48888899999999999999999999887 7764
Q ss_pred eeeeCCCCHHHHHHHHHhh
Q 030928 146 DRFEGAFSKDQLIQRIENS 164 (169)
Q Consensus 146 ~~~~G~~~~~~l~~~i~~~ 164 (169)
.+.|..+.+++.+.+.+.
T Consensus 181 -~~~g~~~~~~~~~~l~~~ 198 (515)
T TIGR03140 181 -FHNGRMDLAELLEKLEET 198 (515)
T ss_pred -EEecCCCHHHHHHHHhhc
Confidence 367999999888877654
No 167
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=98.66 E-value=1.3e-07 Score=61.85 Aligned_cols=93 Identities=18% Similarity=0.271 Sum_probs=70.6
Q ss_pred ccCChhhHHHHHhcCCCcEEEEEEcCC---ChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEE
Q 030928 63 KKQTFSSLDDLLQKSDKPVLVDFYATW---CGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILF 139 (169)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~vvv~f~~~~---C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~ 139 (169)
..++.+++++++... ...+ .|++.. ++.+....=.+.++.+.+++.+....+.-+..+.+..+||+..+|+++|+
T Consensus 12 ~~vd~~~ld~~l~~~-~~~v-lf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~PaLvf~ 89 (107)
T PF07449_consen 12 PRVDADTLDAFLAAP-GDAV-LFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPALVFF 89 (107)
T ss_dssp EEE-CCCHHHHHHCC-SCEE-EEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSEEEEE
T ss_pred eeechhhHHHHHhCC-CcEE-EEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCeEEEE
Confidence 345567778887653 3444 455554 45555555588999999999888888887778899999999999999999
Q ss_pred cCCceeeeeeCCCCHHHH
Q 030928 140 KDGKPSDRFEGAFSKDQL 157 (169)
Q Consensus 140 ~~g~~~~~~~G~~~~~~l 157 (169)
++|+.+....|..+.+++
T Consensus 90 R~g~~lG~i~gi~dW~dY 107 (107)
T PF07449_consen 90 RDGRYLGAIEGIRDWADY 107 (107)
T ss_dssp ETTEEEEEEESSSTHHHH
T ss_pred ECCEEEEEecCeeccccC
Confidence 999999999999887753
No 168
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=98.66 E-value=2.6e-07 Score=67.89 Aligned_cols=40 Identities=18% Similarity=0.541 Sum_probs=32.6
Q ss_pred CCcEEEEEEcCCChhhhhhhHHH---HHHHHHhcCCeEEEEEe
Q 030928 78 DKPVLVDFYATWCGPCQYMAPIL---NEVGAALKDKIQVVKID 117 (169)
Q Consensus 78 ~~~vvv~f~~~~C~~C~~~~~~l---~~~~~~~~~~v~~~~v~ 117 (169)
+++.||+|+...||+|.++.+.+ +.+.+.+++++.++.+.
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~ 79 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYH 79 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEec
Confidence 56789999999999999999866 78888888766665543
No 169
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.63 E-value=9.8e-07 Score=68.24 Aligned_cols=106 Identities=20% Similarity=0.257 Sum_probs=72.8
Q ss_pred ceecccCChhhHHHHHhcCCCcEEEEEEcCCChhhhh-----hhHHHHHHHHH-hcC-CeEEEEEeCCCchhHHHhCCCC
Q 030928 59 VVEAKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQY-----MAPILNEVGAA-LKD-KIQVVKIDTEKYPQIADTYRIE 131 (169)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~vvv~f~~~~C~~C~~-----~~~~l~~~~~~-~~~-~v~~~~v~~d~~~~l~~~~~v~ 131 (169)
...+..++..+|.+.+.+ -+..+|+|+.|--..=.. +...+-+++.+ ... .+.|+.||...+..+++++|+.
T Consensus 33 kDRVi~LneKNfk~~lKk-yd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv~ 111 (383)
T PF01216_consen 33 KDRVIDLNEKNFKRALKK-YDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGVE 111 (383)
T ss_dssp S--CEEE-TTTHHHHHHH--SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT--
T ss_pred ccceEEcchhHHHHHHHh-hcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCcc
Confidence 345677888999998865 457888888775322222 11223344433 332 4999999999999999999999
Q ss_pred CCcEEEEEcCCceeeeeeCCCCHHHHHHHHHhhhc
Q 030928 132 ALPTFILFKDGKPSDRFEGAFSKDQLIQRIENSLS 166 (169)
Q Consensus 132 ~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~~~l~ 166 (169)
..+++.+|++|+++ .|.|.+.++.+..||.+++.
T Consensus 112 E~~SiyVfkd~~~I-EydG~~saDtLVeFl~dl~e 145 (383)
T PF01216_consen 112 EEGSIYVFKDGEVI-EYDGERSADTLVEFLLDLLE 145 (383)
T ss_dssp STTEEEEEETTEEE-EE-S--SHHHHHHHHHHHHS
T ss_pred ccCcEEEEECCcEE-EecCccCHHHHHHHHHHhcc
Confidence 99999999999987 56799999999999998876
No 170
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=98.62 E-value=3.7e-07 Score=56.79 Aligned_cols=70 Identities=19% Similarity=0.250 Sum_probs=49.1
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCc---hhHHHhCCCCCCcEEEEEcCCceeeeeeCCCCH
Q 030928 78 DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKY---PQIADTYRIEALPTFILFKDGKPSDRFEGAFSK 154 (169)
Q Consensus 78 ~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~---~~l~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~ 154 (169)
++.-+++|+.+||++|++.+..|++. ++.|-.+|++++ .++.+..|...+|.+++ +|+.+. | .
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~~ig---G---~ 71 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEK------GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGKLIG---G---S 71 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHc------CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCEEEc---C---H
Confidence 34457789999999999999888642 366666777655 34555678999999876 777532 2 3
Q ss_pred HHHHHHH
Q 030928 155 DQLIQRI 161 (169)
Q Consensus 155 ~~l~~~i 161 (169)
++|.++|
T Consensus 72 ~~l~~~l 78 (79)
T TIGR02190 72 DELEAYL 78 (79)
T ss_pred HHHHHHh
Confidence 5555554
No 171
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=98.61 E-value=8.3e-07 Score=58.87 Aligned_cols=102 Identities=19% Similarity=0.172 Sum_probs=77.2
Q ss_pred cCChhhHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHH---hcCCeEEEEEeCCCchhHHHhCCCCC--CcEEEE
Q 030928 64 KQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAA---LKDKIQVVKIDTEKYPQIADTYRIEA--LPTFIL 138 (169)
Q Consensus 64 ~~~~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~---~~~~v~~~~v~~d~~~~l~~~~~v~~--~Pt~~~ 138 (169)
+.+.++...+... +.+..++|+ .=..-......+.+++++ +.+++.|+.+|.++.....+.+|+.. +|.+.+
T Consensus 3 e~t~e~~~~~~~~-~~~~~~l~f--~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~i 79 (111)
T cd03072 3 EITFENAEELTEE-GLPFLILFH--DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVIAI 79 (111)
T ss_pred ccccccHHHHhcC-CCCeEEEEe--cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEEEE
Confidence 4556666666544 445555566 222335678899999999 99999999999999888999999997 899999
Q ss_pred Ec-CCceeee-eeCCCCHHHHHHHHHhhhccC
Q 030928 139 FK-DGKPSDR-FEGAFSKDQLIQRIENSLSVK 168 (169)
Q Consensus 139 ~~-~g~~~~~-~~G~~~~~~l~~~i~~~l~~~ 168 (169)
.. ++..... ..+..+.+.|.+|+++.++++
T Consensus 80 ~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~Gk 111 (111)
T cd03072 80 DSFRHMYLFPDFEDVYVPGKLKQFVLDLHSGK 111 (111)
T ss_pred EcchhcCcCCCCccccCHHHHHHHHHHHhcCC
Confidence 86 3322333 568889999999999998764
No 172
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=4.1e-08 Score=71.47 Aligned_cols=82 Identities=26% Similarity=0.518 Sum_probs=73.6
Q ss_pred cCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEcCCceeeeeeCCCCHH
Q 030928 76 KSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSDRFEGAFSKD 155 (169)
Q Consensus 76 ~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~ 155 (169)
..++..++.||+.||..|..+...+..+++... ++.|+.++.++.++++..+.+..+|++.++..|+.+.+..|.....
T Consensus 15 ~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~-~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v~~l~~~~~~~ 93 (227)
T KOG0911|consen 15 QKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK-NAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKVDRLSGADPPF 93 (227)
T ss_pred hccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh-hheeeeehhhhhhHHHHHHHHhcCceeeeeecchhhhhhhccCcHH
Confidence 367899999999999999999999999999884 5999999999999999999999999999999999988888887665
Q ss_pred HHH
Q 030928 156 QLI 158 (169)
Q Consensus 156 ~l~ 158 (169)
...
T Consensus 94 ~~~ 96 (227)
T KOG0911|consen 94 LVS 96 (227)
T ss_pred HHH
Confidence 443
No 173
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=98.58 E-value=9.8e-07 Score=64.46 Aligned_cols=88 Identities=14% Similarity=0.203 Sum_probs=63.9
Q ss_pred CCCcEEEEEEc-CCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC----------------------------chhHHH
Q 030928 77 SDKPVLVDFYA-TWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEK----------------------------YPQIAD 126 (169)
Q Consensus 77 ~~~~vvv~f~~-~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~d~----------------------------~~~l~~ 126 (169)
.+++++|+||. .||+.|....+.+.++++++.+ ++.++.|++|. ..++++
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~ 114 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIAR 114 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHH
Confidence 46789999994 7899999999999999999875 47788776653 235667
Q ss_pred hCCCC------CCcEEEEEc-CCceeeeeeCC----CCHHHHHHHHHhh
Q 030928 127 TYRIE------ALPTFILFK-DGKPSDRFEGA----FSKDQLIQRIENS 164 (169)
Q Consensus 127 ~~~v~------~~Pt~~~~~-~g~~~~~~~G~----~~~~~l~~~i~~~ 164 (169)
.||+. .+|+.++++ +|+++..+.+. .+.+++.+.|+.+
T Consensus 115 ~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~ 163 (199)
T PTZ00253 115 SYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAF 163 (199)
T ss_pred HcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhh
Confidence 88985 357877776 88887766553 3455555555443
No 174
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.58 E-value=4.7e-07 Score=56.34 Aligned_cols=58 Identities=24% Similarity=0.468 Sum_probs=43.9
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCc-h----hHHHhCCCCCCcEEEEEcCCcee
Q 030928 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKY-P----QIADTYRIEALPTFILFKDGKPS 145 (169)
Q Consensus 82 vv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~-~----~l~~~~~v~~~Pt~~~~~~g~~~ 145 (169)
++.|+++|||+|+.+.+.|.++.. .+.++.++.+.+ . .+.+.+|+.++|++++ +|+.+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~--~g~~i 64 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV----KPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFI--GGKFI 64 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC----CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEEE
Confidence 577999999999999999988655 366777777654 2 3455678999999755 77653
No 175
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=98.58 E-value=5.9e-07 Score=63.99 Aligned_cols=39 Identities=28% Similarity=0.557 Sum_probs=33.8
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEE
Q 030928 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVK 115 (169)
Q Consensus 77 ~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~ 115 (169)
.+++.+++|+.+.||+|+.+.+.+.++..++++++.|..
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~ 52 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEK 52 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEE
Confidence 467899999999999999999999999998877666543
No 176
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.57 E-value=4.2e-07 Score=53.40 Aligned_cols=56 Identities=18% Similarity=0.362 Sum_probs=42.0
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchh----HHHhCCCCCCcEEEEEcCCcee
Q 030928 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQ----IADTYRIEALPTFILFKDGKPS 145 (169)
Q Consensus 82 vv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~----l~~~~~v~~~Pt~~~~~~g~~~ 145 (169)
++.|+.+||++|+..+..|+ +. ++.|-.+|++..++ +.+..|..++|++++ +|+.+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~----~~--~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLD----EK--GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHH----HT--TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHH----Hc--CCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCEEC
Confidence 57899999999999998882 22 37777788777643 333459999999887 77653
No 177
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.55 E-value=5.5e-07 Score=54.92 Aligned_cols=67 Identities=21% Similarity=0.368 Sum_probs=49.1
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhC---CCCCCcEEEEEcCCceeeeeeCCCCHHHHH
Q 030928 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTY---RIEALPTFILFKDGKPSDRFEGAFSKDQLI 158 (169)
Q Consensus 82 vv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~---~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~ 158 (169)
+..|+.++|++|++.+..|++. ++.|-.+|++++++...++ |...+|++++ +|+ ...|..+.+.|.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~------~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~---~~~~G~~~~~~~ 69 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEH------GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGD---LSWSGFRPDKLK 69 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCC---cEEeccCHHHHH
Confidence 3578899999999999888641 4777788888777655544 8889999766 554 244556777666
Q ss_pred H
Q 030928 159 Q 159 (169)
Q Consensus 159 ~ 159 (169)
+
T Consensus 70 ~ 70 (72)
T TIGR02194 70 A 70 (72)
T ss_pred h
Confidence 5
No 178
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=98.43 E-value=2.6e-06 Score=58.11 Aligned_cols=74 Identities=16% Similarity=0.198 Sum_probs=62.5
Q ss_pred hhhHHHHHHHHHhcCC-eEEEEEeCCCchhHHHhCCCC--CCcEEEEEcCCceeee-eeCCCCHHHHHHHHHhhhccC
Q 030928 95 YMAPILNEVGAALKDK-IQVVKIDTEKYPQIADTYRIE--ALPTFILFKDGKPSDR-FEGAFSKDQLIQRIENSLSVK 168 (169)
Q Consensus 95 ~~~~~l~~~~~~~~~~-v~~~~v~~d~~~~l~~~~~v~--~~Pt~~~~~~g~~~~~-~~G~~~~~~l~~~i~~~l~~~ 168 (169)
.....+.+++++++++ +.|+.+|.++...+.+.||+. ++|++++++..+..+. +.|..+.+.+.+|+++.++++
T Consensus 41 ~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~Gk 118 (130)
T cd02983 41 KYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGFGYPAMVAINFRKMKFATLKGSFSEDGINEFLRELSYGR 118 (130)
T ss_pred HHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCccCCCEEEEEecccCccccccCccCHHHHHHHHHHHHcCC
Confidence 5577889999999999 999999999999999999995 5999999863221333 679999999999999998765
No 179
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=98.41 E-value=2.9e-06 Score=53.02 Aligned_cols=78 Identities=22% Similarity=0.397 Sum_probs=60.6
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEcCC--ceeeeeeCCCCHHHHHH
Q 030928 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDG--KPSDRFEGAFSKDQLIQ 159 (169)
Q Consensus 82 vv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g--~~~~~~~G~~~~~~l~~ 159 (169)
+++|+.+.|+-|......+.++.... .+.+-.||+++++++.++|+. .+|.+.+-..+ .......+..+.+++.+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~--~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~L~~ 78 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF--PFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQLRA 78 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS--TCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc--CceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHHHHH
Confidence 68899999999999999998876554 388999999999999999996 89997773210 11335567889999999
Q ss_pred HHH
Q 030928 160 RIE 162 (169)
Q Consensus 160 ~i~ 162 (169)
+|+
T Consensus 79 ~L~ 81 (81)
T PF05768_consen 79 WLE 81 (81)
T ss_dssp HHH
T ss_pred HhC
Confidence 885
No 180
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=98.40 E-value=4.5e-06 Score=50.77 Aligned_cols=66 Identities=21% Similarity=0.261 Sum_probs=46.6
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCch---hHHHhCCCCCCcEEEEEcCCceeeeeeCCCCHHHHH
Q 030928 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYP---QIADTYRIEALPTFILFKDGKPSDRFEGAFSKDQLI 158 (169)
Q Consensus 82 vv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~---~l~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~ 158 (169)
++.|..+||++|.+.+..|.+. ++.|..+|++++. .+.+..|...+|.+++ +|+.+ | ..+++.
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi--~g~~i----g--g~~~l~ 68 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN------GISYEEIPLGKDITGRSLRAVTGAMTVPQVFI--DGELI----G--GSDDLE 68 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCcEEEECCCChhHHHHHHHhCCCCcCeEEE--CCEEE----e--CHHHHH
Confidence 6779999999999999888742 3666677776554 2334468999999865 77654 2 356666
Q ss_pred HHH
Q 030928 159 QRI 161 (169)
Q Consensus 159 ~~i 161 (169)
+++
T Consensus 69 ~~l 71 (72)
T cd03029 69 KYF 71 (72)
T ss_pred HHh
Confidence 664
No 181
>PHA03050 glutaredoxin; Provisional
Probab=98.40 E-value=1.6e-06 Score=57.14 Aligned_cols=59 Identities=14% Similarity=0.146 Sum_probs=41.5
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCC---c----hhHHHhCCCCCCcEEEEEcCCcee
Q 030928 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEK---Y----PQIADTYRIEALPTFILFKDGKPS 145 (169)
Q Consensus 82 vv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~---~----~~l~~~~~v~~~Pt~~~~~~g~~~ 145 (169)
|+.|..+|||+|++.+..|.+..-+.+ .|-.+|+++ . .++.+..|...+|++++ +|+.+
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~~---~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI--~g~~i 80 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKRG---AYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF--GKTSI 80 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcC---CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE--CCEEE
Confidence 667999999999999988876644332 244455543 2 24555678889999877 78754
No 182
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.39 E-value=6.9e-06 Score=51.31 Aligned_cols=72 Identities=14% Similarity=0.225 Sum_probs=53.4
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHH---HhCCCCCCcEEEEEcCCceeeeeeCCCCHHHHH
Q 030928 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA---DTYRIEALPTFILFKDGKPSDRFEGAFSKDQLI 158 (169)
Q Consensus 82 vv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~---~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~ 158 (169)
+..|..+||++|++.+..|.+ . ++.|-.+|++++++.. +..|...+|++++ +++ ..+..+.++|.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-----~-gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~----~~~Gf~~~~l~ 70 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-----R-GFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDL----SWSGFRPDMIN 70 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-----C-CCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCE----EEecCCHHHHH
Confidence 667999999999999988844 2 4888888988776543 3457889999876 443 33466788888
Q ss_pred HHHHhhh
Q 030928 159 QRIENSL 165 (169)
Q Consensus 159 ~~i~~~l 165 (169)
+++-...
T Consensus 71 ~~~~~~~ 77 (81)
T PRK10329 71 RLHPAPH 77 (81)
T ss_pred HHHHhhh
Confidence 8876554
No 183
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.37 E-value=2.1e-06 Score=51.55 Aligned_cols=57 Identities=19% Similarity=0.376 Sum_probs=41.8
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhH----HHhCCCCCCcEEEEEcCCceee
Q 030928 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQI----ADTYRIEALPTFILFKDGKPSD 146 (169)
Q Consensus 82 vv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l----~~~~~v~~~Pt~~~~~~g~~~~ 146 (169)
++.|+.+||++|+.++..|.+.. +.|..+|++.+.+. .+..+...+|++++ +|+.+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~--~~~~ig 62 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG------IEFEEIDILEDGELREELKELSGWPTVPQIFI--NGEFIG 62 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEEe
Confidence 56799999999999998887653 56667777766543 34457788998755 776554
No 184
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.36 E-value=5e-06 Score=69.70 Aligned_cols=98 Identities=20% Similarity=0.292 Sum_probs=80.3
Q ss_pred hHHHHHhcCCCc-EEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEc-CCce-e
Q 030928 69 SLDDLLQKSDKP-VLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFK-DGKP-S 145 (169)
Q Consensus 69 ~~~~~~~~~~~~-vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~-~g~~-~ 145 (169)
++.+.+.+-.++ .++.|+.+.|..|..+...+++++.. .+++.+...|...+.+++++|+|...|++.+++ +|+. -
T Consensus 356 ~l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~-s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~ 434 (555)
T TIGR03143 356 QLVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFASL-SEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTG 434 (555)
T ss_pred HHHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHHHhc-CCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccc
Confidence 455555544444 67788888999999999999999955 457988888988889999999999999999985 6643 3
Q ss_pred eeeeCCCCHHHHHHHHHhhhcc
Q 030928 146 DRFEGAFSKDQLIQRIENSLSV 167 (169)
Q Consensus 146 ~~~~G~~~~~~l~~~i~~~l~~ 167 (169)
.+|.|.+...++..+|..++..
T Consensus 435 i~f~g~P~G~Ef~s~i~~i~~~ 456 (555)
T TIGR03143 435 LKFHGVPSGHELNSFILALYNA 456 (555)
T ss_pred eEEEecCccHhHHHHHHHHHHh
Confidence 6899999999999999988764
No 185
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.34 E-value=1.9e-06 Score=55.98 Aligned_cols=56 Identities=20% Similarity=0.323 Sum_probs=38.0
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchh-------HHHhCCCCCCcEEEEEcCCcee
Q 030928 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQ-------IADTYRIEALPTFILFKDGKPS 145 (169)
Q Consensus 82 vv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~-------l~~~~~v~~~Pt~~~~~~g~~~ 145 (169)
++.|..+|||+|++.+..|.+. ++.|-.+|+|+.++ +.+..|...+|.+++ +|+.+
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~------~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi--~g~~i 72 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL------GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFV--GGKLV 72 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEE--CCEEE
Confidence 6669999999999999877654 24444555554422 333347889999866 77644
No 186
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=98.33 E-value=9.6e-06 Score=53.76 Aligned_cols=74 Identities=16% Similarity=0.269 Sum_probs=60.6
Q ss_pred hhhhhhhHHHHHHHHHhc-CCeEEEEEeCCCchhHHHhCCCCC----CcEEEEEc-CCceeeeeeCCC-CHHHHHHHHHh
Q 030928 91 GPCQYMAPILNEVGAALK-DKIQVVKIDTEKYPQIADTYRIEA----LPTFILFK-DGKPSDRFEGAF-SKDQLIQRIEN 163 (169)
Q Consensus 91 ~~C~~~~~~l~~~~~~~~-~~v~~~~v~~d~~~~l~~~~~v~~----~Pt~~~~~-~g~~~~~~~G~~-~~~~l~~~i~~ 163 (169)
..-......+.+++++++ +++.|+.+|.++.....+.||+.. +|++.++. ++ ......+.. +.+.|.+|+++
T Consensus 31 ~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~~~i~~~~~-~KY~~~~~~~t~e~i~~F~~~ 109 (111)
T cd03073 31 KGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEKPVVAIRTAKG-KKYVMEEEFSDVDALEEFLED 109 (111)
T ss_pred hHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCCCEEEEEeCCC-CccCCCcccCCHHHHHHHHHH
Confidence 444567889999999999 699999999999888999999984 99999986 44 333356777 99999999987
Q ss_pred hh
Q 030928 164 SL 165 (169)
Q Consensus 164 ~l 165 (169)
.+
T Consensus 110 f~ 111 (111)
T cd03073 110 FF 111 (111)
T ss_pred hC
Confidence 53
No 187
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.31 E-value=5e-06 Score=50.81 Aligned_cols=56 Identities=13% Similarity=0.250 Sum_probs=41.1
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHH----HhCCCC-CCcEEEEEcCCcee
Q 030928 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA----DTYRIE-ALPTFILFKDGKPS 145 (169)
Q Consensus 82 vv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~----~~~~v~-~~Pt~~~~~~g~~~ 145 (169)
++.|+.+||++|...+..|++. ++.|-.+|++.+++.. +.+|.. ++|++++ +|+.+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i--~g~~i 62 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIFI--GDVHI 62 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEE--CCEEE
Confidence 5679999999999999888652 3667777777765443 345766 8999876 77644
No 188
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.30 E-value=5.3e-06 Score=50.60 Aligned_cols=57 Identities=16% Similarity=0.363 Sum_probs=43.4
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchh----HHHhCCCCCCcEEEEEcCCceee
Q 030928 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQ----IADTYRIEALPTFILFKDGKPSD 146 (169)
Q Consensus 82 vv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~----l~~~~~v~~~Pt~~~~~~g~~~~ 146 (169)
++.|+.+||++|++.+..|++. ++.|-.+|++++++ +.+..+-..+|++++ +|+.+.
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i--~~~~iG 63 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK------GLPYVEINIDIFPERKAELEERTGSSVVPQIFF--NEKLVG 63 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEEe
Confidence 5679999999999999888751 36677778877654 555567889999877 776543
No 189
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.28 E-value=3.2e-06 Score=52.35 Aligned_cols=56 Identities=11% Similarity=0.294 Sum_probs=40.5
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhH----HHhCCCCCCcEEEEEcCCcee
Q 030928 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQI----ADTYRIEALPTFILFKDGKPS 145 (169)
Q Consensus 82 vv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l----~~~~~v~~~Pt~~~~~~g~~~ 145 (169)
++.|+.+||++|+..+..|++. ++.|-.+|++.+++. .+..|...+|++++ +|+.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i--~g~~i 60 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI--GDVHV 60 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE--CCEEE
Confidence 4578999999999999888753 255666666666544 34458889999866 77644
No 190
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=1.1e-05 Score=50.26 Aligned_cols=66 Identities=17% Similarity=0.306 Sum_probs=44.9
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCch-----hHHHhC-CCCCCcEEEEEcCCceeeeeeCCCCHH
Q 030928 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYP-----QIADTY-RIEALPTFILFKDGKPSDRFEGAFSKD 155 (169)
Q Consensus 82 vv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~-----~l~~~~-~v~~~Pt~~~~~~g~~~~~~~G~~~~~ 155 (169)
++.|..++||+|++.+..|.+ ..+.|..++.+.++ +..++. |...+|.+++ +|+. .-|..+.+
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~------~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i--~~~~---igg~~d~~ 71 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDR------KGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI--GGKH---VGGCDDLD 71 (80)
T ss_pred EEEEECCCCchHHHHHHHHHH------cCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE--CCEE---EeCcccHH
Confidence 567999999999999988862 23666666665544 444455 7899999888 6662 23344555
Q ss_pred HHH
Q 030928 156 QLI 158 (169)
Q Consensus 156 ~l~ 158 (169)
++.
T Consensus 72 ~~~ 74 (80)
T COG0695 72 ALE 74 (80)
T ss_pred HHH
Confidence 544
No 191
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=2.3e-05 Score=54.82 Aligned_cols=110 Identities=17% Similarity=0.251 Sum_probs=75.6
Q ss_pred cCCCcceecccCChhhHHHHHhcCCCcEEEEEE-cCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeC-------------
Q 030928 54 RRLLPVVEAKKQTFSSLDDLLQKSDKPVLVDFY-ATWCGPCQYMAPILNEVGAALKD-KIQVVKIDT------------- 118 (169)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~------------- 118 (169)
+..+|.+.+...+.+.+. +.+..+++||++|| ..++|.|-...-.+.+...++.+ +..++.|..
T Consensus 7 G~~aPdF~Lp~~~g~~v~-Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~ 85 (157)
T COG1225 7 GDKAPDFELPDQDGETVS-LSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKH 85 (157)
T ss_pred CCcCCCeEeecCCCCEEe-hHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHh
Confidence 455677777777766522 33345778888888 67999999999999888888775 467777754
Q ss_pred --------CCchhHHHhCCCCCC------------cEEEEE-cCCceeeeeeCCC---CHHHHHHHHHhh
Q 030928 119 --------EKYPQIADTYRIEAL------------PTFILF-KDGKPSDRFEGAF---SKDQLIQRIENS 164 (169)
Q Consensus 119 --------d~~~~l~~~~~v~~~------------Pt~~~~-~~g~~~~~~~G~~---~~~~l~~~i~~~ 164 (169)
|.+.++++.|||.+. ++.+++ ++|++...+.... ..+++.+.|+++
T Consensus 86 ~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~l 155 (157)
T COG1225 86 GLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAALKKL 155 (157)
T ss_pred CCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEecCCCCcccHHHHHHHHHHh
Confidence 455688889998542 344444 5899887774333 356666666554
No 192
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=98.13 E-value=1.2e-05 Score=50.95 Aligned_cols=58 Identities=22% Similarity=0.369 Sum_probs=43.7
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeC--CCc------------------------------hhHHHhCC
Q 030928 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDT--EKY------------------------------PQIADTYR 129 (169)
Q Consensus 82 vv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~--d~~------------------------------~~l~~~~~ 129 (169)
+++|+++.|++|..+.+.++++.....+++.+....+ ... .....++|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 4679999999999999999999866666666554432 221 24556789
Q ss_pred CCCCcEEEEE
Q 030928 130 IEALPTFILF 139 (169)
Q Consensus 130 v~~~Pt~~~~ 139 (169)
+.++|++++.
T Consensus 81 ~~g~Pt~v~~ 90 (98)
T cd02972 81 VTGTPTFVVN 90 (98)
T ss_pred CCCCCEEEEC
Confidence 9999999884
No 193
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.11 E-value=3.3e-05 Score=49.92 Aligned_cols=50 Identities=16% Similarity=0.308 Sum_probs=36.6
Q ss_pred CCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhH----HHhCCCCCCcEEEEEcCCcee
Q 030928 88 TWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQI----ADTYRIEALPTFILFKDGKPS 145 (169)
Q Consensus 88 ~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l----~~~~~v~~~Pt~~~~~~g~~~ 145 (169)
+|||+|++.+..|.+. ++.|..+|+++++++ .+..|...+|.+++ +|+.+
T Consensus 25 ~~Cp~C~~ak~lL~~~------~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi--~g~~i 78 (97)
T TIGR00365 25 PQCGFSARAVQILKAC------GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV--KGEFV 78 (97)
T ss_pred CCCchHHHHHHHHHHc------CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE--CCEEE
Confidence 8999999999888653 356777787766543 34457789999876 77644
No 194
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=98.05 E-value=0.00012 Score=46.81 Aligned_cols=88 Identities=19% Similarity=0.385 Sum_probs=66.7
Q ss_pred hhHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEcCC-ceee
Q 030928 68 SSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDG-KPSD 146 (169)
Q Consensus 68 ~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g-~~~~ 146 (169)
+++++++ ...++++|-|+..+|. .....+.+++..+.+.+.|+.+. +.++.+++++.. |++++|+.. +...
T Consensus 8 ~~l~~~~-~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~~-~~i~l~~~~~~~~~ 79 (97)
T cd02981 8 EELEKFL-DKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKVKP-GSVVLFKPFEEEPV 79 (97)
T ss_pred HHHHHHh-ccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCCCC-CceEEeCCcccCCc
Confidence 4455544 4567888899999887 46778889999987778888777 457787888754 888998643 4445
Q ss_pred eeeCCCCHHHHHHHHHh
Q 030928 147 RFEGAFSKDQLIQRIEN 163 (169)
Q Consensus 147 ~~~G~~~~~~l~~~i~~ 163 (169)
.|.|..+.+.|.+||..
T Consensus 80 ~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 80 EYDGEFTEESLVEFIKD 96 (97)
T ss_pred cCCCCCCHHHHHHHHHh
Confidence 68898889999999864
No 195
>PRK10638 glutaredoxin 3; Provisional
Probab=98.00 E-value=3.4e-05 Score=48.28 Aligned_cols=56 Identities=13% Similarity=0.240 Sum_probs=41.3
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchh----HHHhCCCCCCcEEEEEcCCcee
Q 030928 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQ----IADTYRIEALPTFILFKDGKPS 145 (169)
Q Consensus 82 vv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~----l~~~~~v~~~Pt~~~~~~g~~~ 145 (169)
++.|..+||++|++.+..|++. ++.|..+|++++++ +.+..|...+|++++ +|+.+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~--~g~~i 63 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI--DAQHI 63 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEE
Confidence 5678899999999999888752 36666777776653 344557889998866 77654
No 196
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=97.94 E-value=0.00012 Score=54.29 Aligned_cols=108 Identities=19% Similarity=0.298 Sum_probs=72.6
Q ss_pred cCCCcceecccCChhh---HHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCch--------
Q 030928 54 RRLLPVVEAKKQTFSS---LDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYP-------- 122 (169)
Q Consensus 54 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~-------- 122 (169)
+..+|...+..++.+. +-+.. +.++|+|++|.+-+||+=+.-.+.++++++++.+.+.|+.|.+.|..
T Consensus 76 G~~APns~vv~l~g~~~~~ildf~-~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~EAHpsDgW~~~ 154 (237)
T PF00837_consen 76 GGPAPNSPVVTLDGQRSCRILDFA-KGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEEAHPSDGWAFG 154 (237)
T ss_pred CCCCCCCceEeeCCCcceeHHHhc-cCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHhhhCcCCCccCC
Confidence 3344555544444444 44443 45899999999999999999999999999999987778877543311
Q ss_pred --------------------------------------hHHHhCCCCCCcE-EEEEcCCceeeee-eCC--CCHHHHHHH
Q 030928 123 --------------------------------------QIADTYRIEALPT-FILFKDGKPSDRF-EGA--FSKDQLIQR 160 (169)
Q Consensus 123 --------------------------------------~l~~~~~v~~~Pt-~~~~~~g~~~~~~-~G~--~~~~~l~~~ 160 (169)
...+.|| ++|. ++++++|++++.- .|. ...+++++|
T Consensus 155 ~~~~~i~qh~sledR~~aA~~l~~~~~~~pi~vD~mdN~~~~~Yg--A~PeRlyIi~~gkv~Y~Gg~GP~~y~~~e~r~~ 232 (237)
T PF00837_consen 155 NNPYEIPQHRSLEDRLRAAKLLKEEFPQCPIVVDTMDNNFNKAYG--ALPERLYIIQDGKVVYKGGPGPFGYSPEELREW 232 (237)
T ss_pred CCceeecCCCCHHHHHHHHHHHHhhCCCCCEEEEccCCHHHHHhC--CCcceEEEEECCEEEEeCCCCCCcCCHHHHHHH
Confidence 1112233 4565 6677899876432 122 367999999
Q ss_pred HHhh
Q 030928 161 IENS 164 (169)
Q Consensus 161 i~~~ 164 (169)
+++.
T Consensus 233 L~~~ 236 (237)
T PF00837_consen 233 LEKY 236 (237)
T ss_pred HHhc
Confidence 9864
No 197
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=97.91 E-value=6.4e-05 Score=47.84 Aligned_cols=58 Identities=21% Similarity=0.460 Sum_probs=39.5
Q ss_pred CcEEEEEEc-----CCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhH----HHhCCCCCCcEEEEEcCCcee
Q 030928 79 KPVLVDFYA-----TWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQI----ADTYRIEALPTFILFKDGKPS 145 (169)
Q Consensus 79 ~~vvv~f~~-----~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l----~~~~~v~~~Pt~~~~~~g~~~ 145 (169)
.+++| |.. +||++|+..+..|.+.. +.|-.+|++.++++ .+..|-..+|.+++ +|+.+
T Consensus 8 ~~vvv-f~k~~~~~~~Cp~C~~ak~~L~~~~------i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi--~g~~i 74 (90)
T cd03028 8 NPVVL-FMKGTPEEPRCGFSRKVVQILNQLG------VDFGTFDILEDEEVRQGLKEYSNWPTFPQLYV--NGELV 74 (90)
T ss_pred CCEEE-EEcCCCCCCCCcHHHHHHHHHHHcC------CCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEE--CCEEE
Confidence 45555 443 79999999998886642 55666676665543 34468889999855 77643
No 198
>PRK10824 glutaredoxin-4; Provisional
Probab=97.87 E-value=9.4e-05 Score=49.21 Aligned_cols=65 Identities=18% Similarity=0.389 Sum_probs=41.4
Q ss_pred HHHHHhcCCCcEEEEEEc-----CCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHH----HhCCCCCCcEEEEEc
Q 030928 70 LDDLLQKSDKPVLVDFYA-----TWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA----DTYRIEALPTFILFK 140 (169)
Q Consensus 70 ~~~~~~~~~~~vvv~f~~-----~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~----~~~~v~~~Pt~~~~~ 140 (169)
.++++.. .+|+| |.. ||||+|++.+..|.++. +.|..+|++++.++. +.-|-..+|.+++
T Consensus 8 v~~~I~~--~~Vvv-f~Kg~~~~p~Cpyc~~ak~lL~~~~------i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI-- 76 (115)
T PRK10824 8 IQRQIAE--NPILL-YMKGSPKLPSCGFSAQAVQALSACG------ERFAYVDILQNPDIRAELPKYANWPTFPQLWV-- 76 (115)
T ss_pred HHHHHhc--CCEEE-EECCCCCCCCCchHHHHHHHHHHcC------CCceEEEecCCHHHHHHHHHHhCCCCCCeEEE--
Confidence 4455532 35555 554 69999999998887652 334445665554433 3346778898888
Q ss_pred CCcee
Q 030928 141 DGKPS 145 (169)
Q Consensus 141 ~g~~~ 145 (169)
+|+.+
T Consensus 77 ~G~~I 81 (115)
T PRK10824 77 DGELV 81 (115)
T ss_pred CCEEE
Confidence 88755
No 199
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.80 E-value=8.2e-05 Score=54.11 Aligned_cols=99 Identities=19% Similarity=0.354 Sum_probs=77.5
Q ss_pred ccCChhhHHHHHhcC--CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEc
Q 030928 63 KKQTFSSLDDLLQKS--DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFK 140 (169)
Q Consensus 63 ~~~~~~~~~~~~~~~--~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~ 140 (169)
...+..+|.+.+++. .-.++|+.|-+.-+.|..+...+.=++.+|+- +.|+.+-... -+...+|...++|++++|+
T Consensus 142 El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~-vKFckikss~-~gas~~F~~n~lP~LliYk 219 (273)
T KOG3171|consen 142 ELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPI-VKFCKIKSSN-TGASDRFSLNVLPTLLIYK 219 (273)
T ss_pred EeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCc-eeEEEeeecc-ccchhhhcccCCceEEEee
Confidence 344667888888764 34678899999999999999999999999995 9999987655 4678899999999999999
Q ss_pred CCceeeeee-------CCCCHHHHHHHHHh
Q 030928 141 DGKPSDRFE-------GAFSKDQLIQRIEN 163 (169)
Q Consensus 141 ~g~~~~~~~-------G~~~~~~l~~~i~~ 163 (169)
+|+.+..+. ......++..||++
T Consensus 220 gGeLIgNFv~va~qlgedffa~dle~FL~e 249 (273)
T KOG3171|consen 220 GGELIGNFVSVAEQLGEDFFAGDLESFLNE 249 (273)
T ss_pred CCchhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 999876443 12345566666654
No 200
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.0003 Score=45.96 Aligned_cols=68 Identities=22% Similarity=0.410 Sum_probs=44.5
Q ss_pred hHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCch-hHHH----hCCCCCCcEEEEEcCCc
Q 030928 69 SLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYP-QIAD----TYRIEALPTFILFKDGK 143 (169)
Q Consensus 69 ~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~-~l~~----~~~v~~~Pt~~~~~~g~ 143 (169)
...+++.. .+| |.|..+||++|++++..|.+ ++....++.+|-+++. ++-+ --|-..+|.+++ +|+
T Consensus 6 ~v~~~i~~--~~V-VifSKs~C~~c~~~k~ll~~----~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~Gk 76 (104)
T KOG1752|consen 6 KVRKMISE--NPV-VIFSKSSCPYCHRAKELLSD----LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GGK 76 (104)
T ss_pred HHHHHhhc--CCE-EEEECCcCchHHHHHHHHHh----CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CCE
Confidence 34555533 344 45999999999998877766 4434566667665443 3333 235668999888 887
Q ss_pred ee
Q 030928 144 PS 145 (169)
Q Consensus 144 ~~ 145 (169)
.+
T Consensus 77 ~i 78 (104)
T KOG1752|consen 77 FI 78 (104)
T ss_pred EE
Confidence 54
No 201
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.00021 Score=54.82 Aligned_cols=104 Identities=16% Similarity=0.348 Sum_probs=75.4
Q ss_pred cccCChhhHHHHHhcC--CCcEEEEEEcC----CChhhhhhhHHHHHHHHHhc------C--CeEEEEEeCCCchhHHHh
Q 030928 62 AKKQTFSSLDDLLQKS--DKPVLVDFYAT----WCGPCQYMAPILNEVGAALK------D--KIQVVKIDTEKYPQIADT 127 (169)
Q Consensus 62 ~~~~~~~~~~~~~~~~--~~~vvv~f~~~----~C~~C~~~~~~l~~~~~~~~------~--~v~~~~v~~d~~~~l~~~ 127 (169)
+...+++.|..++... +-.++|.|.|. .|.-|+....++.-+++-+. + ++-|..||.|+.+++.++
T Consensus 42 VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~Fq~ 121 (331)
T KOG2603|consen 42 VIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQVFQQ 121 (331)
T ss_pred eEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHHHHH
Confidence 3445667777777643 33477778864 59999999999988887543 1 478999999999999999
Q ss_pred CCCCCCcEEEEEc--CCceee-----eeeCCCCHHHHHHHHHhhh
Q 030928 128 YRIEALPTFILFK--DGKPSD-----RFEGAFSKDQLIQRIENSL 165 (169)
Q Consensus 128 ~~v~~~Pt~~~~~--~g~~~~-----~~~G~~~~~~l~~~i~~~l 165 (169)
++++.+|++++|. .|+... ...-...+|++.+|+++.-
T Consensus 122 l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~t 166 (331)
T KOG2603|consen 122 LNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRT 166 (331)
T ss_pred hcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhh
Confidence 9999999999993 343321 1111123888888887654
No 202
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=97.76 E-value=0.00067 Score=48.75 Aligned_cols=36 Identities=22% Similarity=0.372 Sum_probs=29.4
Q ss_pred EEEEEEcCCChhhhhhhHHHHHHHHHhcC-CeEEEEE
Q 030928 81 VLVDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKI 116 (169)
Q Consensus 81 vvv~f~~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v 116 (169)
.|.+|+..-||+|-...+.+.++.+++.+ ++.+..+
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~ 37 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPF 37 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEecc
Confidence 47789999999999999999999999944 4555444
No 203
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.72 E-value=0.0017 Score=43.33 Aligned_cols=97 Identities=24% Similarity=0.396 Sum_probs=67.1
Q ss_pred CChhhHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHH-HHhc--CCeEEEEEeCC-----CchhHHHhCCC--CCCc
Q 030928 65 QTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVG-AALK--DKIQVVKIDTE-----KYPQIADTYRI--EALP 134 (169)
Q Consensus 65 ~~~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~-~~~~--~~v~~~~v~~d-----~~~~l~~~~~v--~~~P 134 (169)
++.-+|++.+.. -+.++|-|=.- -+--.-+..+.+++ +... +.+.++.|.+. +|.+++++|+| ..+|
T Consensus 9 LD~~tFdKvi~k-f~~~LVKFD~a--yPyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~fP 85 (126)
T PF07912_consen 9 LDELTFDKVIPK-FKYVLVKFDVA--YPYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKEDFP 85 (126)
T ss_dssp ESTTHHHHHGGG-SSEEEEEEEES--S--CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC-S
T ss_pred ccceehhheecc-CceEEEEEecc--CCCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcccCC
Confidence 466689999865 47889988522 12233466788888 3332 35888888653 46899999999 5689
Q ss_pred EEEEEc-CCceeeee--eCCCCHHHHHHHHHhh
Q 030928 135 TFILFK-DGKPSDRF--EGAFSKDQLIQRIENS 164 (169)
Q Consensus 135 t~~~~~-~g~~~~~~--~G~~~~~~l~~~i~~~ 164 (169)
.+.+|. +.+...++ .|..+.+.|++|+.+.
T Consensus 86 v~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~ 118 (126)
T PF07912_consen 86 VIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSN 118 (126)
T ss_dssp EEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHT
T ss_pred EEEEecCCCCCCccCCccCCccHHHHHHHHHhC
Confidence 999997 55666677 8999999999999765
No 204
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.00091 Score=50.18 Aligned_cols=38 Identities=32% Similarity=0.531 Sum_probs=30.9
Q ss_pred hHHHhCCCCCCcEEEEEcCCceeeeeeCCCCHHHHHHHHHhhh
Q 030928 123 QIADTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENSL 165 (169)
Q Consensus 123 ~l~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~~~l 165 (169)
.++.++||.++||+++ +|+ .+.|..+.+++.+.|+..+
T Consensus 206 ~~a~~~gv~gTPt~~v--~~~---~~~g~~~~~~l~~~i~~~~ 243 (244)
T COG1651 206 KLAQQLGVNGTPTFIV--NGK---LVPGLPDLDELKAIIDEAL 243 (244)
T ss_pred HHHHhcCCCcCCeEEE--CCe---eecCCCCHHHHHHHHHHhh
Confidence 3445689999999888 565 6789999999999998764
No 205
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=97.59 E-value=0.00042 Score=49.64 Aligned_cols=32 Identities=22% Similarity=0.316 Sum_probs=25.4
Q ss_pred EEEcCCChhhhhhhHHHHHHHHHhcCCeEEEE
Q 030928 84 DFYATWCGPCQYMAPILNEVGAALKDKIQVVK 115 (169)
Q Consensus 84 ~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~ 115 (169)
+|..|.|+.|-...|.|.++..++++++.+--
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~ 33 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRF 33 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEE
Confidence 69999999999999999999999998765543
No 206
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=97.51 E-value=0.00074 Score=47.36 Aligned_cols=73 Identities=16% Similarity=0.229 Sum_probs=47.6
Q ss_pred CcEEEEEEcCCChhhhhh-hHHHHHHHHHhcC-Ce-EEEEEeCC-----------------------CchhHHHhCCCC-
Q 030928 79 KPVLVDFYATWCGPCQYM-APILNEVGAALKD-KI-QVVKIDTE-----------------------KYPQIADTYRIE- 131 (169)
Q Consensus 79 ~~vvv~f~~~~C~~C~~~-~~~l~~~~~~~~~-~v-~~~~v~~d-----------------------~~~~l~~~~~v~- 131 (169)
..+++.|.+.||+.|... .+.+.+...++.+ ++ .++.|..| .+.++++.||+.
T Consensus 31 ~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~~~~f~lLsD~~~~~~~~ygv~~ 110 (155)
T cd03013 31 KVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGAKDKIRFLADGNGEFTKALGLTL 110 (155)
T ss_pred cEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCCCCcEEEEECCCHHHHHHcCCCc
Confidence 344454558899999998 9999888888763 34 46666443 344677778863
Q ss_pred -----C-----CcEEEEEcCCceeeeeeCC
Q 030928 132 -----A-----LPTFILFKDGKPSDRFEGA 151 (169)
Q Consensus 132 -----~-----~Pt~~~~~~g~~~~~~~G~ 151 (169)
+ ....+++++|++.+.+...
T Consensus 111 ~~~~~~~~~~~~R~~fiId~g~I~~~~~~~ 140 (155)
T cd03013 111 DLSAAGGGIRSKRYALIVDDGKVKYLFVEE 140 (155)
T ss_pred cccccCCcceeeeEEEEECCCEEEEEEEec
Confidence 1 2345566678877665443
No 207
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.51 E-value=0.0019 Score=41.55 Aligned_cols=96 Identities=16% Similarity=0.314 Sum_probs=72.0
Q ss_pred ChhhHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCC--chhHHHhCCCC----CCcE-EEE
Q 030928 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEK--YPQIADTYRIE----ALPT-FIL 138 (169)
Q Consensus 66 ~~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~--~~~l~~~~~v~----~~Pt-~~~ 138 (169)
+..+|..++... +-|+|+|..+.-.. ......+.++++...|+-+++.|||.+ ...+|+++.|. --|. +.-
T Consensus 8 d~KdfKKLLRTr-~NVLvLy~ks~k~a-~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~LkH 85 (112)
T cd03067 8 DHKDFKKLLRTR-NNVLVLYSKSAKSA-EALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELKH 85 (112)
T ss_pred chHHHHHHHhhc-CcEEEEEecchhhH-HHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcchhhc
Confidence 456788888654 46777676554333 344558889999999888888899876 67899999998 5554 556
Q ss_pred EcCCceeeeeeCCCCHHHHHHHHHh
Q 030928 139 FKDGKPSDRFEGAFSKDQLIQRIEN 163 (169)
Q Consensus 139 ~~~g~~~~~~~G~~~~~~l~~~i~~ 163 (169)
|++|.....|....+...+.+|+.+
T Consensus 86 YKdG~fHkdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 86 YKDGDFHTEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred ccCCCccccccchhhHHHHHHHhhC
Confidence 6899988888888888888888753
No 208
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.48 E-value=0.00039 Score=56.29 Aligned_cols=56 Identities=13% Similarity=0.200 Sum_probs=41.2
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchh---HHHh---------CCCCCCcEEEEEcCCcee
Q 030928 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQ---IADT---------YRIEALPTFILFKDGKPS 145 (169)
Q Consensus 82 vv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~---l~~~---------~~v~~~Pt~~~~~~g~~~ 145 (169)
|+.|..+|||+|++.+..|.+. ++.|-.+|+++.+. +.++ .|...+|++++ +|+.+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~~i 71 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDVHI 71 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCEEE
Confidence 6779999999999999888653 37777788876653 2222 47889999877 67643
No 209
>PTZ00062 glutaredoxin; Provisional
Probab=97.44 E-value=0.00098 Score=48.86 Aligned_cols=50 Identities=12% Similarity=0.232 Sum_probs=35.9
Q ss_pred CCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHH----HhCCCCCCcEEEEEcCCcee
Q 030928 88 TWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIA----DTYRIEALPTFILFKDGKPS 145 (169)
Q Consensus 88 ~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~----~~~~v~~~Pt~~~~~~g~~~ 145 (169)
|+|++|++....|.+. ++.|..+|+++++++. +..|-..+|.+++ +|+.+
T Consensus 126 p~C~~C~~~k~~L~~~------~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI--~G~~I 179 (204)
T PTZ00062 126 PFCRFSNAVVNMLNSS------GVKYETYNIFEDPDLREELKVYSNWPTYPQLYV--NGELI 179 (204)
T ss_pred CCChhHHHHHHHHHHc------CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEE--CCEEE
Confidence 7999999998888643 3667778887665443 3346678898887 78754
No 210
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=97.42 E-value=0.002 Score=45.82 Aligned_cols=66 Identities=23% Similarity=0.378 Sum_probs=54.9
Q ss_pred hhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEcCC-ceeeeeeCC-CCHHHHHHHHHhh
Q 030928 95 YMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDG-KPSDRFEGA-FSKDQLIQRIENS 164 (169)
Q Consensus 95 ~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g-~~~~~~~G~-~~~~~l~~~i~~~ 164 (169)
.....+.++++.+.+.+.|+.+. +.++++++++.. |++++|+.+ +....+.|. .+.++|.+||...
T Consensus 7 ~~~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~ 74 (184)
T PF13848_consen 7 ELFEIFEEAAEKLKGDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKN 74 (184)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHh
Confidence 35668899999999889999887 677999999999 999999863 445678887 8999999999765
No 211
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.0027 Score=44.01 Aligned_cols=90 Identities=21% Similarity=0.303 Sum_probs=65.2
Q ss_pred cCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCC-eEEEEEeCCCc--------h---hHHH-hCCCC-----------
Q 030928 76 KSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDK-IQVVKIDTEKY--------P---QIAD-TYRIE----------- 131 (169)
Q Consensus 76 ~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~-v~~~~v~~d~~--------~---~l~~-~~~v~----------- 131 (169)
-.+++++|.=.|+.|+.--+ ..-|+.+.++|.++ +.++.+.|+.- . ++|+ .|||+
T Consensus 23 ~~GkVlLIVNtASkCGfTpQ-YegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~fC~~~YgVtFp~f~Ki~VnG 101 (162)
T COG0386 23 YKGKVLLIVNTASKCGFTPQ-YEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKFCQLNYGVTFPMFSKIDVNG 101 (162)
T ss_pred hCCcEEEEEEcccccCCcHh-HHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHHHHHhccCceeeeeeEEeecC
Confidence 45899999999999999874 56888999998864 77777766431 1 2332 23221
Q ss_pred ------------CC--------c-----EEEEEcCCceeeeeeCCCCHHHHHHHHHhhhc
Q 030928 132 ------------AL--------P-----TFILFKDGKPSDRFEGAFSKDQLIQRIENSLS 166 (169)
Q Consensus 132 ------------~~--------P-----t~~~~~~g~~~~~~~G~~~~~~l~~~i~~~l~ 166 (169)
.. + -+++-++|+++.|+.-.-+++++...|+++|+
T Consensus 102 ~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t~P~d~~~~Ie~lL~ 161 (162)
T COG0386 102 KNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKTKPEDIELAIEKLLA 161 (162)
T ss_pred CCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCCChhhHHHHHHHHhc
Confidence 11 1 24555799999999988999999999999885
No 212
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.31 E-value=0.0019 Score=46.69 Aligned_cols=95 Identities=17% Similarity=0.284 Sum_probs=68.1
Q ss_pred CChhhHHHHHhc--CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEcCC
Q 030928 65 QTFSSLDDLLQK--SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDG 142 (169)
Q Consensus 65 ~~~~~~~~~~~~--~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g 142 (169)
++..+|.+-+.+ .+-.|||..|...-+.|.-+...++.++.+|+. ++|+.+-...- ...|-=.-.||+++|..|
T Consensus 96 ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~-iKFVki~at~c---IpNYPe~nlPTl~VY~~G 171 (240)
T KOG3170|consen 96 ISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ-IKFVKIPATTC---IPNYPESNLPTLLVYHHG 171 (240)
T ss_pred ccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc-ceEEecccccc---cCCCcccCCCeEEEeecc
Confidence 344555444332 366889999999999999999999999999996 88887743210 112333578999999999
Q ss_pred ceeeeeeCC-------CCHHHHHHHHHh
Q 030928 143 KPSDRFEGA-------FSKDQLIQRIEN 163 (169)
Q Consensus 143 ~~~~~~~G~-------~~~~~l~~~i~~ 163 (169)
.+...+.|. .+.+++..++-+
T Consensus 172 ~lk~q~igll~lgG~n~t~ed~e~~L~q 199 (240)
T KOG3170|consen 172 ALKKQMIGLLELGGMNLTMEDVEDFLVQ 199 (240)
T ss_pred hHHhheehhhhhcCCcCCHHHHHHHHHh
Confidence 887777654 356777777644
No 213
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=97.14 E-value=0.013 Score=37.50 Aligned_cols=85 Identities=20% Similarity=0.309 Sum_probs=58.6
Q ss_pred hhHHHHHhcCCCcE-EEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEcCCce-e
Q 030928 68 SSLDDLLQKSDKPV-LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKP-S 145 (169)
Q Consensus 68 ~~~~~~~~~~~~~v-vv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g~~-~ 145 (169)
+++.++..+-.++| ++.|..+. ..|..+...+++++.... ++.+...+.+. ..|++.+.++|+. -
T Consensus 8 ~qL~~~f~~l~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSd-kI~~~~~~~~~-----------~~P~~~i~~~~~~~g 74 (94)
T cd02974 8 QQLKAYLERLENPVELVASLDDS-EKSAELLELLEEIASLSD-KITLEEDNDDE-----------RKPSFSINRPGEDTG 74 (94)
T ss_pred HHHHHHHHhCCCCEEEEEEeCCC-cchHHHHHHHHHHHHhCC-ceEEEEecCCC-----------CCCEEEEecCCCccc
Confidence 34445554444555 55555555 999999999999988754 56664433221 4799999877633 2
Q ss_pred eeeeCCCCHHHHHHHHHhhh
Q 030928 146 DRFEGAFSKDQLIQRIENSL 165 (169)
Q Consensus 146 ~~~~G~~~~~~l~~~i~~~l 165 (169)
.+|.|.+...++..+|..++
T Consensus 75 IrF~GiP~GhEf~Slilai~ 94 (94)
T cd02974 75 IRFAGIPMGHEFTSLVLALL 94 (94)
T ss_pred EEEEecCCchhHHHHHHHhC
Confidence 58999999999999997664
No 214
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=97.11 E-value=0.011 Score=43.40 Aligned_cols=108 Identities=21% Similarity=0.299 Sum_probs=71.8
Q ss_pred ceecccCChhhHHHHHhcCCCcEEEEEEcCCChh-hhhhhHHHHHHHHHhc----CCe--EEEEEeCCC-----------
Q 030928 59 VVEAKKQTFSSLDDLLQKSDKPVLVDFYATWCGP-CQYMAPILNEVGAALK----DKI--QVVKIDTEK----------- 120 (169)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~vvv~f~~~~C~~-C~~~~~~l~~~~~~~~----~~v--~~~~v~~d~----------- 120 (169)
.+++.+.+.+.+.... ..+++++|.|.-+.||. |-.....+.++.++.. +++ .++.||-+.
T Consensus 49 ~f~l~d~~G~~~~~~~-l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~ 127 (207)
T COG1999 49 DFELTDQDGKPFTLKD-LKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAE 127 (207)
T ss_pred ceeeecCCCCEeeccc-cCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhc
Confidence 3455555555554332 25899999999888874 8777777777776665 234 445554321
Q ss_pred ----------------chhHHHhCCCCC--Cc-------------EEEEEc-CCceeeeeeCCCCHHHHHHHHHhhhcc
Q 030928 121 ----------------YPQIADTYRIEA--LP-------------TFILFK-DGKPSDRFEGAFSKDQLIQRIENSLSV 167 (169)
Q Consensus 121 ----------------~~~l~~~~~v~~--~P-------------t~~~~~-~g~~~~~~~G~~~~~~l~~~i~~~l~~ 167 (169)
.++++++|+|.. +| .+++++ +|+....+.+..+.+++.+.|+++++.
T Consensus 128 ~~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l~~~ 206 (207)
T COG1999 128 LNFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKLLKE 206 (207)
T ss_pred ccCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHHhhc
Confidence 125566676663 22 244444 999999998888899999999988864
No 215
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.0035 Score=53.06 Aligned_cols=82 Identities=27% Similarity=0.405 Sum_probs=63.2
Q ss_pred cCChhhHHHHHhcCCCcEEEEEEcCCChhhhhhhHHH---HHHHHHhcCCeEEEEEeCCCchhHHHhC--------CCCC
Q 030928 64 KQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPIL---NEVGAALKDKIQVVKIDTEKYPQIADTY--------RIEA 132 (169)
Q Consensus 64 ~~~~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l---~~~~~~~~~~v~~~~v~~d~~~~l~~~~--------~v~~ 132 (169)
.+..+.|.+.- ..++|+++-....||..|+.|..+= ++++..++..+.-++||.++-+++-+.| |--|
T Consensus 30 pW~~eAf~~A~-~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~GG 108 (667)
T COG1331 30 PWGEEAFAKAK-EEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQGG 108 (667)
T ss_pred ccCHHHHHHHH-HhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccCCC
Confidence 34667777664 4589999999999999999887643 6677777767888999999988766555 3569
Q ss_pred CcEEEEE-cCCceee
Q 030928 133 LPTFILF-KDGKPSD 146 (169)
Q Consensus 133 ~Pt~~~~-~~g~~~~ 146 (169)
+|--+|. .+|+...
T Consensus 109 WPLtVfLTPd~kPFf 123 (667)
T COG1331 109 WPLTVFLTPDGKPFF 123 (667)
T ss_pred CceeEEECCCCceee
Confidence 9987777 4888653
No 216
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=97.04 E-value=0.0072 Score=42.03 Aligned_cols=56 Identities=16% Similarity=0.296 Sum_probs=39.9
Q ss_pred EEEEEcC------CChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchh----HHHhCCC----CCCcEEEEEcCCcee
Q 030928 82 LVDFYAT------WCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQ----IADTYRI----EALPTFILFKDGKPS 145 (169)
Q Consensus 82 vv~f~~~------~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~----l~~~~~v----~~~Pt~~~~~~g~~~ 145 (169)
||.|+++ +|++|++++..|+.+ ++.|-.+|++.+++ +.+.++- ..+|.+++ +|+.+
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI--~G~~I 71 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV--DGRYL 71 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE--CCEEE
Confidence 4567777 999999999888653 37777888876654 4444454 68898877 77644
No 217
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=96.77 E-value=0.043 Score=35.48 Aligned_cols=92 Identities=10% Similarity=0.177 Sum_probs=62.2
Q ss_pred ChhhHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEcC-Cce
Q 030928 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKD-GKP 144 (169)
Q Consensus 66 ~~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~-g~~ 144 (169)
+.+++++++...+..++|-|+..--. .....+.+++..+.+.+.|+... +.++...+++. .|.++++++ .+.
T Consensus 7 ~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~~-~~~i~l~~~~~e~ 79 (102)
T cd03066 7 SERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFATF---DSKVAKKLGLK-MNEVDFYEPFMEE 79 (102)
T ss_pred CHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEEC---cHHHHHHcCCC-CCcEEEeCCCCCC
Confidence 44567777751345666666655333 35667888999887668886544 34667778774 688898864 444
Q ss_pred eeee-eCCCCHHHHHHHHHhh
Q 030928 145 SDRF-EGAFSKDQLIQRIENS 164 (169)
Q Consensus 145 ~~~~-~G~~~~~~l~~~i~~~ 164 (169)
...| .|..+.+.|.+||...
T Consensus 80 ~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 80 PVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred CcccCCCCCCHHHHHHHHHHh
Confidence 4457 6788999999999754
No 218
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.62 E-value=0.023 Score=47.46 Aligned_cols=88 Identities=18% Similarity=0.245 Sum_probs=64.4
Q ss_pred hhHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEcCCce-ee
Q 030928 68 SSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKP-SD 146 (169)
Q Consensus 68 ~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g~~-~~ 146 (169)
+++.++..+-.++|-+.++.+.|..|..+...+++++...+ ++.+-..+.+ ...|++.+.++|+. -.
T Consensus 8 ~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~-~i~~~~~~~~-----------~~~p~~~~~~~~~~~~i 75 (517)
T PRK15317 8 TQLKQYLELLERPIELVASLDDSEKSAELKELLEEIASLSD-KITVEEDSLD-----------VRKPSFSITRPGEDTGV 75 (517)
T ss_pred HHHHHHHHhCCCCEEEEEEeCCCchHHHHHHHHHHHHHhCC-ceEEEEccCC-----------CCCCEEEEEcCCccceE
Confidence 34555555556677666666689999999999999998764 5766432211 24799988876644 35
Q ss_pred eeeCCCCHHHHHHHHHhhhcc
Q 030928 147 RFEGAFSKDQLIQRIENSLSV 167 (169)
Q Consensus 147 ~~~G~~~~~~l~~~i~~~l~~ 167 (169)
+|.|.+...|+..||..+++.
T Consensus 76 ~f~g~P~g~Ef~s~i~~i~~~ 96 (517)
T PRK15317 76 RFAGIPMGHEFTSLVLALLQV 96 (517)
T ss_pred EEEecCccHHHHHHHHHHHHh
Confidence 889999999999999988753
No 219
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=96.45 E-value=0.074 Score=34.53 Aligned_cols=90 Identities=16% Similarity=0.323 Sum_probs=60.2
Q ss_pred ChhhHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEc-----
Q 030928 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFK----- 140 (169)
Q Consensus 66 ~~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~----- 140 (169)
+.+++++++. .+++++|-|+..--. .....+.+++..+.+.+.|+... +.++...+++ .|++++|+
T Consensus 7 s~~~l~~f~~-~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~--~~~ivl~~p~~~~ 77 (104)
T cd03069 7 TEAEFEKFLS-DDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTS---DKQLLEKYGY--GEGVVLFRPPRLS 77 (104)
T ss_pred CHHHHHHHhc-cCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEEC---hHHHHHhcCC--CCceEEEechhhh
Confidence 3455666664 355666666655333 35677888999887668886554 3466788888 67778772
Q ss_pred -C-CceeeeeeCCCCHHHHHHHHHhh
Q 030928 141 -D-GKPSDRFEGAFSKDQLIQRIENS 164 (169)
Q Consensus 141 -~-g~~~~~~~G~~~~~~l~~~i~~~ 164 (169)
+ .+....|.|..+.+.|.+||+..
T Consensus 78 ~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 78 NKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred cccCcccccccCcCCHHHHHHHHHhh
Confidence 1 12223578888899999999753
No 220
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.42 E-value=0.038 Score=46.17 Aligned_cols=89 Identities=20% Similarity=0.323 Sum_probs=64.2
Q ss_pred hhHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEcCCce-ee
Q 030928 68 SSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKP-SD 146 (169)
Q Consensus 68 ~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g~~-~~ 146 (169)
+++.++..+-.++|-+.++.+.|..|..+...+++++...+ ++.+...+.+. ...|++.+.++|+. -.
T Consensus 8 ~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~-ki~~~~~~~~~----------~~~p~~~~~~~~~~~~i 76 (515)
T TIGR03140 8 AQLKSYLASLENPVTLVLSAGSHEKSKELLELLDEIASLSD-KISLTQNTADT----------LRKPSFTILRDGADTGI 76 (515)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCchhHHHHHHHHHHHHhCC-CeEEEEecCCc----------CCCCeEEEecCCcccce
Confidence 34555555545666565555589999999999999988764 57765444332 35699988877653 35
Q ss_pred eeeCCCCHHHHHHHHHhhhcc
Q 030928 147 RFEGAFSKDQLIQRIENSLSV 167 (169)
Q Consensus 147 ~~~G~~~~~~l~~~i~~~l~~ 167 (169)
+|.|.+...++..+|..++..
T Consensus 77 ~f~g~P~g~Ef~s~i~~i~~~ 97 (515)
T TIGR03140 77 RFAGIPGGHEFTSLVLAILQV 97 (515)
T ss_pred EEEecCCcHHHHHHHHHHHHh
Confidence 899999999999999888753
No 221
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=96.42 E-value=0.022 Score=34.60 Aligned_cols=73 Identities=16% Similarity=0.264 Sum_probs=43.1
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEc--CCceeeeeeCCCCHHHHHH
Q 030928 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFK--DGKPSDRFEGAFSKDQLIQ 159 (169)
Q Consensus 82 vv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~--~g~~~~~~~G~~~~~~l~~ 159 (169)
+.+|+.++|++|++.+-.+.+..-. +.+..++.....++ +.-+...+|+++.-+ +|+.+. +...|.+
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi~----y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~l~------eS~~I~~ 70 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGIP----YEVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQQLV------DSSVIIS 70 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCc----eEEEECCchhHHHH-HHhCCCccCEEEECCCCCccEEE------cHHHHHH
Confidence 4568889999999998665433221 33333333222333 345667899987642 244432 4667777
Q ss_pred HHHhhh
Q 030928 160 RIENSL 165 (169)
Q Consensus 160 ~i~~~l 165 (169)
+|++.|
T Consensus 71 yL~~~~ 76 (77)
T cd03040 71 TLKTYL 76 (77)
T ss_pred HHHHHc
Confidence 777665
No 222
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=96.38 E-value=0.0015 Score=50.23 Aligned_cols=88 Identities=15% Similarity=0.326 Sum_probs=67.4
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEcCCceeeeeeCCCCHHHH
Q 030928 78 DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSDRFEGAFSKDQL 157 (169)
Q Consensus 78 ~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l 157 (169)
..++-+.||+.||+.-+...|.+.-....+...-.+..=+....++....||+.+.|++.+. +..-..++.|..+...+
T Consensus 76 ~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~i~h~~vee~~~lpsv~s~~~~~~~ps~~~~-n~t~~~~~~~~r~l~sL 154 (319)
T KOG2640|consen 76 NDYVSLLFYASWCPFSRAVRPEFDVRSSLFSSIQHFAVEESQALPSVFSSYGIHSEPSNLML-NQTCPASYRGERDLASL 154 (319)
T ss_pred CCcccccchhcccCcccccCcccchhhhhccccccccHHHHhhcccchhccccccCCcceee-ccccchhhcccccHHHH
Confidence 56888999999999999999988777776653222331123334577889999999997765 55566688899999999
Q ss_pred HHHHHhhhc
Q 030928 158 IQRIENSLS 166 (169)
Q Consensus 158 ~~~i~~~l~ 166 (169)
.++..+++.
T Consensus 155 v~fy~~i~~ 163 (319)
T KOG2640|consen 155 VNFYTEITP 163 (319)
T ss_pred HHHHHhhcc
Confidence 999988875
No 223
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=96.33 E-value=0.061 Score=36.72 Aligned_cols=74 Identities=16% Similarity=0.343 Sum_probs=55.3
Q ss_pred cEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCC----CCcEEEEEcCCceeeeeeCCCCHH
Q 030928 80 PVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIE----ALPTFILFKDGKPSDRFEGAFSKD 155 (169)
Q Consensus 80 ~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~----~~Pt~~~~~~g~~~~~~~G~~~~~ 155 (169)
.-++.|+.|.|+=|+.....++ .+ .+.+-.+..++-..+-++|||. +=-|.++ +|. .++|..+.+
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk-----~~-Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI--~Gy---~vEGHVPa~ 94 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMK-----AN-GFEVKVVETDDFLALKRRLGIPYEMQSCHTAVI--NGY---YVEGHVPAE 94 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHH-----hC-CcEEEEeecCcHHHHHHhcCCChhhccccEEEE--cCE---EEeccCCHH
Confidence 3477799999999998776664 22 3667677778877888888875 3346666 776 457899999
Q ss_pred HHHHHHHhh
Q 030928 156 QLIQRIENS 164 (169)
Q Consensus 156 ~l~~~i~~~ 164 (169)
.+..++.+-
T Consensus 95 aI~~ll~~~ 103 (149)
T COG3019 95 AIARLLAEK 103 (149)
T ss_pred HHHHHHhCC
Confidence 999988654
No 224
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.32 E-value=0.079 Score=39.34 Aligned_cols=40 Identities=35% Similarity=0.498 Sum_probs=32.3
Q ss_pred HHhCCCCCCcEEEEEcCCceeeeeeCCCCHHHHHHHHHhhhccC
Q 030928 125 ADTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENSLSVK 168 (169)
Q Consensus 125 ~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~~~l~~~ 168 (169)
++++||+++|+++| +|+. ...|..+.+.+...|++++..+
T Consensus 177 A~e~gI~gVP~fv~--d~~~--~V~Gaq~~~v~~~al~~~~~~~ 216 (225)
T COG2761 177 AQEMGIRGVPTFVF--DGKY--AVSGAQPYDVLEDALRQLLAEK 216 (225)
T ss_pred HHHCCCccCceEEE--cCcE--eecCCCCHHHHHHHHHHHHhcc
Confidence 34589999999988 4443 4579999999999999998653
No 225
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=96.12 E-value=0.034 Score=33.89 Aligned_cols=70 Identities=11% Similarity=0.117 Sum_probs=41.0
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCc----hhHHHhCCCCCCcEEEEEcCCceeeeeeCCCCHHHH
Q 030928 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKY----PQIADTYRIEALPTFILFKDGKPSDRFEGAFSKDQL 157 (169)
Q Consensus 82 vv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~----~~l~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l 157 (169)
+.+|+.++|++|++.+-.+++.. +.|-.++++.. +++.+.-+...+|+++.-++|..+. +...|
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~g------i~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~------es~~I 69 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELE------LDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQMF------ESADI 69 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcC------CcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEEE------cHHHH
Confidence 35677889999999886665432 33333444332 2333334567899975433444332 45667
Q ss_pred HHHHHh
Q 030928 158 IQRIEN 163 (169)
Q Consensus 158 ~~~i~~ 163 (169)
.++|++
T Consensus 70 ~~yL~~ 75 (77)
T cd03041 70 VKYLFK 75 (77)
T ss_pred HHHHHH
Confidence 777765
No 226
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=96.10 E-value=0.029 Score=33.49 Aligned_cols=68 Identities=10% Similarity=0.137 Sum_probs=38.2
Q ss_pred EEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEcCCceeeeeeCCCCHHHHHHHHH
Q 030928 84 DFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIE 162 (169)
Q Consensus 84 ~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~ 162 (169)
+|+.++|++|++.+-.+....- .+..+.++.+......+..+-..+|++.. ++|..+. +...|.++|+
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~gl----~~~~~~~~~~~~~~~~~~~~~~~vP~L~~-~~~~~l~------es~aI~~yL~ 70 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLKNI----PVEQIILQNDDEATPIRMIGAKQVPILEK-DDGSFMA------ESLDIVAFID 70 (71)
T ss_pred eEecCCCcHhHHHHHHHHHcCC----CeEEEECCCCchHHHHHhcCCCccCEEEe-CCCeEee------hHHHHHHHHh
Confidence 5778899999988766643321 23344455443333334445567898744 3355432 3455555554
No 227
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=96.05 E-value=0.031 Score=33.88 Aligned_cols=58 Identities=26% Similarity=0.259 Sum_probs=49.1
Q ss_pred EEEEEEcCCChhhhhhhHHHHHHHHHh-cCCeEEEEEeCCCchhHHHhCCCCCCcEEEE
Q 030928 81 VLVDFYATWCGPCQYMAPILNEVGAAL-KDKIQVVKIDTEKYPQIADTYRIEALPTFIL 138 (169)
Q Consensus 81 vvv~f~~~~C~~C~~~~~~l~~~~~~~-~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~ 138 (169)
.+.+|-+..-+..+.....+.++.+++ ++.+.+=.||+.+++++++.++|-.+||++-
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk 61 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLVK 61 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhhh
Confidence 466677777789998888998888876 4568888899999999999999999999654
No 228
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=0.052 Score=43.07 Aligned_cols=82 Identities=18% Similarity=0.368 Sum_probs=66.3
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEcCCceeeeeeCCCCHHH
Q 030928 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSDRFEGAFSKDQ 156 (169)
Q Consensus 77 ~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~ 156 (169)
.+..-+=-|++-.|..|-.+.+.|+-++-..+ ++.-..||..-.++-.+.-+|.++||+++ ||+.. ..|..+.++
T Consensus 115 ~g~~~FETy~SltC~nCPDVVQALN~msvlNp-~I~H~~IdGa~Fq~Evear~IMaVPtvfl--nGe~f--g~GRmtlee 189 (520)
T COG3634 115 DGDFHFETYFSLTCHNCPDVVQALNLMSVLNP-RIKHTAIDGALFQDEVEARNIMAVPTVFL--NGEEF--GQGRMTLEE 189 (520)
T ss_pred CCceeEEEEEEeeccCChHHHHHHHHHHhcCC-CceeEEecchhhHhHHHhccceecceEEE--cchhh--cccceeHHH
Confidence 46677888888999999999998877766555 58888888877777788889999999888 88864 357888888
Q ss_pred HHHHHHh
Q 030928 157 LIQRIEN 163 (169)
Q Consensus 157 l~~~i~~ 163 (169)
+.+.|+.
T Consensus 190 ilaki~~ 196 (520)
T COG3634 190 ILAKIDT 196 (520)
T ss_pred HHHHhcC
Confidence 8887765
No 229
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=95.70 E-value=0.4 Score=32.86 Aligned_cols=88 Identities=13% Similarity=0.186 Sum_probs=61.3
Q ss_pred cCCCcEEEEEEcCCC----hhhhhhh--HHHHHHHHHhcCCeEEEEEeCCCch------------------hHHHhCCCC
Q 030928 76 KSDKPVLVDFYATWC----GPCQYMA--PILNEVGAALKDKIQVVKIDTEKYP------------------QIADTYRIE 131 (169)
Q Consensus 76 ~~~~~vvv~f~~~~C----~~C~~~~--~~l~~~~~~~~~~v~~~~v~~d~~~------------------~l~~~~~v~ 131 (169)
+..|+.+|+.+.+.- ..|+... +.+.++.+ +++.+..-|+.... ...+.++..
T Consensus 19 ~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~---~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~~ 95 (136)
T cd02990 19 RDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLS---QNFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKTD 95 (136)
T ss_pred hhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHH---cCEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCcC
Confidence 347899999998876 4555442 23333433 35777777765432 234567899
Q ss_pred CCcEEEEEc--CC--ceeeeeeCCCCHHHHHHHHHhhhc
Q 030928 132 ALPTFILFK--DG--KPSDRFEGAFSKDQLIQRIENSLS 166 (169)
Q Consensus 132 ~~Pt~~~~~--~g--~~~~~~~G~~~~~~l~~~i~~~l~ 166 (169)
.+|.+.++- .+ +++.+..|..+.+++...|.+.++
T Consensus 96 ~fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~ve 134 (136)
T cd02990 96 QLPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAME 134 (136)
T ss_pred CCCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHHh
Confidence 999988873 22 678899999999999999988764
No 230
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=95.70 E-value=0.057 Score=32.26 Aligned_cols=58 Identities=10% Similarity=0.196 Sum_probs=37.5
Q ss_pred EEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCc-hhHHHhCCCCCCcEEEEEcCCcee
Q 030928 83 VDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKY-PQIADTYRIEALPTFILFKDGKPS 145 (169)
Q Consensus 83 v~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~-~~l~~~~~v~~~Pt~~~~~~g~~~ 145 (169)
++|+.+||++|++.+-.+++..- .+.+..+|.... +++.+......+|++.. .+|..+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl----~~e~~~v~~~~~~~~~~~~np~~~vP~L~~-~~g~~l 60 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGI----TVELREVELKNKPAEMLAASPKGTVPVLVL-GNGTVI 60 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCC----CcEEEEeCCCCCCHHHHHHCCCCCCCEEEE-CCCcEE
Confidence 46788999999998766644322 355666665433 45555566789999854 346544
No 231
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=95.52 E-value=0.055 Score=38.61 Aligned_cols=66 Identities=24% Similarity=0.248 Sum_probs=42.0
Q ss_pred cCCCcceecccCChhhHHHHHhcCCCcEEEEEEcCCC-hhhhhhhHHHHHHHHHhc---CCeEEEEEeCCC
Q 030928 54 RRLLPVVEAKKQTFSSLDDLLQKSDKPVLVDFYATWC-GPCQYMAPILNEVGAALK---DKIQVVKIDTEK 120 (169)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~f~~~~C-~~C~~~~~~l~~~~~~~~---~~v~~~~v~~d~ 120 (169)
....+.+.+.+.+...+.. ..-.+++++|.|.-+.| ..|-.....+.++.+++. .++.++-|.+|-
T Consensus 29 ~~~~~~f~L~d~~G~~~~~-~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP 98 (174)
T PF02630_consen 29 PRIVPDFTLTDQDGKTVTL-DDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDP 98 (174)
T ss_dssp SCSSST-EEEETTSSEEEG-GGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESST
T ss_pred CccCCCcEEEcCCCCEecH-HHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCC
Confidence 3445556666666655542 22358999999999999 468777777766666544 357777776653
No 232
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=95.28 E-value=0.16 Score=35.78 Aligned_cols=92 Identities=28% Similarity=0.355 Sum_probs=63.4
Q ss_pred hcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC--------chh----HHHhCCCC----------
Q 030928 75 QKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEK--------YPQ----IADTYRIE---------- 131 (169)
Q Consensus 75 ~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~d~--------~~~----l~~~~~v~---------- 131 (169)
.-.+++++|.=-|+-|+.-..-...|..+.++|++ .+.++...|+. +.+ ++.+|++.
T Consensus 31 ~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~Ei~~f~~~r~~~~f~if~KidVN 110 (171)
T KOG1651|consen 31 QYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNEEILNFVKVRYGAEFPIFQKIDVN 110 (171)
T ss_pred HhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcHHHHHHHHhccCCCCccEeEEecC
Confidence 34588999999999999999778899999999975 47777776642 222 22333321
Q ss_pred ---CCc----------------------EEEEEcCCceeeeeeCCCCHHHHHHHHHhhhc
Q 030928 132 ---ALP----------------------TFILFKDGKPSDRFEGAFSKDQLIQRIENSLS 166 (169)
Q Consensus 132 ---~~P----------------------t~~~~~~g~~~~~~~G~~~~~~l~~~i~~~l~ 166 (169)
.-| -+++-++|.++.||.-.-+..+++.-|+++|.
T Consensus 111 G~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ptt~p~~~~~dIe~lL~ 170 (171)
T KOG1651|consen 111 GDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFSPTTSPLDIEKDIEKLLA 170 (171)
T ss_pred CCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeCCCCCccccchhHHHHhc
Confidence 011 24455799999998766677677777777764
No 233
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=95.25 E-value=0.24 Score=39.96 Aligned_cols=89 Identities=17% Similarity=0.216 Sum_probs=61.8
Q ss_pred cCCCcEEEEEEcCCChhhhhhhH--HHHHHHHHhcCCeEEEEEeCCCc----hhHHHhCCCCCCcEEEEE-cCCceeeee
Q 030928 76 KSDKPVLVDFYATWCGPCQYMAP--ILNEVGAALKDKIQVVKIDTEKY----PQIADTYRIEALPTFILF-KDGKPSDRF 148 (169)
Q Consensus 76 ~~~~~vvv~f~~~~C~~C~~~~~--~l~~~~~~~~~~v~~~~v~~d~~----~~l~~~~~v~~~Pt~~~~-~~g~~~~~~ 148 (169)
+.++.++|.|-+........+.. .+.......- .-.|+.|.++.+ ..+..-|.+-.+|.++|+ ++|..+...
T Consensus 16 K~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~l-s~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLevi 94 (506)
T KOG2507|consen 16 KGKKALFVVYISGDDEESDKLNRLTWTDASVSDSL-SKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLEVI 94 (506)
T ss_pred hcCCeEEEEEEecCchHhhHHhhccchhhhhhhhh-hcceEEEEeccCchhhhhhhhhcccccccceeeecCCCceeEEe
Confidence 34667888888887777777662 2233322221 123455554444 355666888899999888 599999999
Q ss_pred eCCCCHHHHHHHHHhhh
Q 030928 149 EGAFSKDQLIQRIENSL 165 (169)
Q Consensus 149 ~G~~~~~~l~~~i~~~l 165 (169)
.|....++|...|++.+
T Consensus 95 tg~v~adeL~~~i~Kv~ 111 (506)
T KOG2507|consen 95 TGFVTADELASSIEKVW 111 (506)
T ss_pred eccccHHHHHHHHHHHH
Confidence 99999999999888764
No 234
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=95.06 E-value=0.35 Score=29.12 Aligned_cols=71 Identities=18% Similarity=0.254 Sum_probs=48.3
Q ss_pred EEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCc-hhHHHhCCCCCCcEEEEEcCCceeeeeeCCCCHHHHHHHHH
Q 030928 84 DFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKY-PQIADTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIE 162 (169)
Q Consensus 84 ~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~-~~l~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~ 162 (169)
+|+.++|++|++..-.++...- .+.+..++..+. .++.+...-..+|++. .+|..+. +-..|.++|+
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i----~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~l~------dS~~I~~yL~ 68 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGI----PYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEVLT------DSAAIIEYLE 68 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTE----EEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEEEE------SHHHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHcCC----eEEEeccCcccchhHHHhhcccccceEEE--ECCEEEe------CHHHHHHHHH
Confidence 4788999999998755432211 356667766553 5566677788999987 3577654 4677888887
Q ss_pred hhhc
Q 030928 163 NSLS 166 (169)
Q Consensus 163 ~~l~ 166 (169)
+...
T Consensus 69 ~~~~ 72 (75)
T PF13417_consen 69 ERYP 72 (75)
T ss_dssp HHST
T ss_pred HHcC
Confidence 7654
No 235
>PRK09301 circadian clock protein KaiB; Provisional
Probab=95.04 E-value=0.15 Score=33.14 Aligned_cols=75 Identities=23% Similarity=0.199 Sum_probs=60.1
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHHHh-cCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEcCCceeeeeeCCCC
Q 030928 78 DKPVLVDFYATWCGPCQYMAPILNEVGAAL-KDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSDRFEGAFS 153 (169)
Q Consensus 78 ~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~-~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~ 153 (169)
+..++-+|.+..-+..+.....+.++.+++ .+.+.+=.||+.+++++++.++|-++||++-.. -....++.|.++
T Consensus 5 ~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~-P~P~rriiGDls 80 (103)
T PRK09301 5 KTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKIL-PPPVRKIIGDLS 80 (103)
T ss_pred ceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhhcC-CCCcceeecccc
Confidence 457788888999999999999999987754 456777789999999999999999999965432 344557788764
No 236
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=94.95 E-value=0.22 Score=35.22 Aligned_cols=91 Identities=19% Similarity=0.253 Sum_probs=49.3
Q ss_pred ccCCCcceecccCChhhH--HHHHhcCCCcEEEEEE-cCCChhhhh----hhHHHHHHHHHhcCCeEEEEEe--------
Q 030928 53 KRRLLPVVEAKKQTFSSL--DDLLQKSDKPVLVDFY-ATWCGPCQY----MAPILNEVGAALKDKIQVVKID-------- 117 (169)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~vvv~f~-~~~C~~C~~----~~~~l~~~~~~~~~~v~~~~v~-------- 117 (169)
.+...|...+.+.+...+ .++ ..+++||++|| +..-|.|.+ ++..++++.+.+ ..++.+.
T Consensus 65 ~Gd~iPD~tL~dedg~sisLkki--t~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~---aeV~GlS~D~s~sqK 139 (211)
T KOG0855|consen 65 KGDAIPDFTLKDEDGKSISLKKI--TGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAG---AEVIGLSGDDSASQK 139 (211)
T ss_pred cCCcCCCcccccCCCCeeeeeee--cCCCcEEEEEeccCCCCCcccccccccccHHHHhhcC---ceEEeeccCchHHHH
Confidence 344566666666665543 222 23458888887 333444443 344555555432 2333333
Q ss_pred -------------CCCchhHHHhCCCCCCc--------EEEEEcCCceeeee
Q 030928 118 -------------TEKYPQIADTYRIEALP--------TFILFKDGKPSDRF 148 (169)
Q Consensus 118 -------------~d~~~~l~~~~~v~~~P--------t~~~~~~g~~~~~~ 148 (169)
.|...++-+.+|+.+.| +++|.++|.....+
T Consensus 140 aF~sKqnlPYhLLSDpk~e~ik~lGa~k~p~gg~~~Rsh~if~kg~~k~~ik 191 (211)
T KOG0855|consen 140 AFASKQNLPYHLLSDPKNEVIKDLGAPKDPFGGLPGRSHYIFDKGGVKQLIK 191 (211)
T ss_pred HhhhhccCCeeeecCcchhHHHHhCCCCCCCCCcccceEEEEecCCeEEEEE
Confidence 34455777888888766 56666665544333
No 237
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=94.90 E-value=0.18 Score=31.73 Aligned_cols=75 Identities=23% Similarity=0.180 Sum_probs=59.0
Q ss_pred CcEEEEEEcCCChhhhhhhHHHHHHHHHh-cCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEcCCceeeeeeCCCCH
Q 030928 79 KPVLVDFYATWCGPCQYMAPILNEVGAAL-KDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSDRFEGAFSK 154 (169)
Q Consensus 79 ~~vvv~f~~~~C~~C~~~~~~l~~~~~~~-~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~ 154 (169)
..++=.|.+..-+..+.....+.++.+++ .+.+.+=.||+.+++++++.++|-++||++-. .-....++.|.++.
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~-~P~P~rriiGdls~ 78 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLSKI-LPPPVRKIIGDLSD 78 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHhhc-CCCCcceeeccccc
Confidence 45677788899999999999999987754 45677778999999999999999999996543 23445577787643
No 238
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=94.89 E-value=0.022 Score=37.54 Aligned_cols=55 Identities=22% Similarity=0.344 Sum_probs=33.8
Q ss_pred EEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCch----hHHHhCCCCCCcEEEEEc-CCc
Q 030928 83 VDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYP----QIADTYRIEALPTFILFK-DGK 143 (169)
Q Consensus 83 v~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~----~l~~~~~v~~~Pt~~~~~-~g~ 143 (169)
..|+.++|+.|++.+..|++- ++.|-.+|+.+++ ++.+-++..+.|..-+++ .|+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~~~~~ 61 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH------GVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFNTSGK 61 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc------CCceEEecccCCcccHHHHHHHHHHcCCCHHHHHhcCCc
Confidence 468899999999999777552 3666666665433 334444444556544443 443
No 239
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=94.84 E-value=0.11 Score=35.34 Aligned_cols=42 Identities=29% Similarity=0.488 Sum_probs=32.1
Q ss_pred chhHHHhCCCCCCcEEEEEcCCc-----------eeeeeeCCCCHHHHHHHHH
Q 030928 121 YPQIADTYRIEALPTFILFKDGK-----------PSDRFEGAFSKDQLIQRIE 162 (169)
Q Consensus 121 ~~~l~~~~~v~~~Pt~~~~~~g~-----------~~~~~~G~~~~~~l~~~i~ 162 (169)
++.+.++|+|+.+|++++.+++. ......|....+.-.+.+.
T Consensus 60 dP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia 112 (130)
T TIGR02742 60 DPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMA 112 (130)
T ss_pred ChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHH
Confidence 58999999999999999998663 3556778877665554443
No 240
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=94.55 E-value=0.24 Score=28.44 Aligned_cols=57 Identities=14% Similarity=0.104 Sum_probs=36.1
Q ss_pred EEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCch--hHHHhCCCCCCcEEEEEcCCcee
Q 030928 83 VDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYP--QIADTYRIEALPTFILFKDGKPS 145 (169)
Q Consensus 83 v~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~--~l~~~~~v~~~Pt~~~~~~g~~~ 145 (169)
.+|+.++|+.|++.+-.+....- .+....++.+... ++.+..+-..+|++.. +|+.+
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i----~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~--~~~~~ 60 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGL----PYELVPVDLGEGEQEEFLALNPLGKVPVLED--GGLVL 60 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCC----CcEEEEeCCCCCCCHHHHhcCCCCCCCEEEE--CCEEE
Confidence 35788999999988866654422 2444555544332 2455667889998766 56544
No 241
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=94.54 E-value=0.81 Score=29.98 Aligned_cols=88 Identities=22% Similarity=0.299 Sum_probs=66.0
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC--CeEEEEEeCCCchhHHH----hCCCC-CCcEEEEEc--CCcee-ee
Q 030928 78 DKPVLVDFYATWCGPCQYMAPILNEVGAALKD--KIQVVKIDTEKYPQIAD----TYRIE-ALPTFILFK--DGKPS-DR 147 (169)
Q Consensus 78 ~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~--~v~~~~v~~d~~~~l~~----~~~v~-~~Pt~~~~~--~g~~~-~~ 147 (169)
+...++-|-.+.-+.-..+.+.+.++|+++.+ ++.|+-||-|+-+-+.. .|+|. .-|.+-+++ +..-+ ..
T Consensus 20 ~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~PqIGVV~vtdadSvW~~ 99 (120)
T cd03074 20 DGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQIGVVNVTDADSVWME 99 (120)
T ss_pred CCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCCceeeEecccccceeEe
Confidence 56788889999999999999999999999875 59999999999876553 45554 248887774 22222 22
Q ss_pred ee---CCCCHHHHHHHHHhhh
Q 030928 148 FE---GAFSKDQLIQRIENSL 165 (169)
Q Consensus 148 ~~---G~~~~~~l~~~i~~~l 165 (169)
.. ...+.++++.||+..|
T Consensus 100 m~~~~d~~t~~~Le~WiedVL 120 (120)
T cd03074 100 MDDDEDLPTAEELEDWIEDVL 120 (120)
T ss_pred cccccccCcHHHHHHHHHhhC
Confidence 32 3478999999998765
No 242
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=94.41 E-value=0.82 Score=30.46 Aligned_cols=77 Identities=18% Similarity=0.215 Sum_probs=49.4
Q ss_pred CCChhhhhhhHHHHHHHHHhcC-CeEEEEE-eCCCch-----------hHHHhCCCC--CCcEEEEEcCCceeeeeeCCC
Q 030928 88 TWCGPCQYMAPILNEVGAALKD-KIQVVKI-DTEKYP-----------QIADTYRIE--ALPTFILFKDGKPSDRFEGAF 152 (169)
Q Consensus 88 ~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v-~~d~~~-----------~l~~~~~v~--~~Pt~~~~~~g~~~~~~~G~~ 152 (169)
..-+.=+.....|.+-...+.+ ++.++.+ +-.... .+.++|++. ++-.+++-++|.+..++.+..
T Consensus 20 ~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLiGKDG~vK~r~~~p~ 99 (118)
T PF13778_consen 20 ADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLIGKDGGVKLRWPEPI 99 (118)
T ss_pred CCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEEEeCCCcEEEecCCCC
Confidence 3455555556666654444443 3544444 333322 677888865 332344447999999999999
Q ss_pred CHHHHHHHHHhh
Q 030928 153 SKDQLIQRIENS 164 (169)
Q Consensus 153 ~~~~l~~~i~~~ 164 (169)
+.++|.+.|+.+
T Consensus 100 ~~~~lf~~ID~M 111 (118)
T PF13778_consen 100 DPEELFDTIDAM 111 (118)
T ss_pred CHHHHHHHHhCC
Confidence 999999999865
No 243
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.37 E-value=0.097 Score=37.96 Aligned_cols=45 Identities=20% Similarity=0.243 Sum_probs=37.2
Q ss_pred hhHHHhCCCCCCcEEEEEcCCceeeeeeC--CCCHHHHHHHHHhhhc
Q 030928 122 PQIADTYRIEALPTFILFKDGKPSDRFEG--AFSKDQLIQRIENSLS 166 (169)
Q Consensus 122 ~~l~~~~~v~~~Pt~~~~~~g~~~~~~~G--~~~~~~l~~~i~~~l~ 166 (169)
..+++++|+.|+||+++-+||+....-.| ....+.+..++.+.+.
T Consensus 164 r~l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~~~ 210 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQRLA 210 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHHHHh
Confidence 46788999999999999999997666666 5577899999888764
No 244
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=94.35 E-value=0.38 Score=36.41 Aligned_cols=90 Identities=22% Similarity=0.408 Sum_probs=59.3
Q ss_pred CCCcEEEEEEcCCChh-hhhhhHHHHHHHHHhcCC--e----EEEEEeCCC--------------------------chh
Q 030928 77 SDKPVLVDFYATWCGP-CQYMAPILNEVGAALKDK--I----QVVKIDTEK--------------------------YPQ 123 (169)
Q Consensus 77 ~~~~vvv~f~~~~C~~-C~~~~~~l~~~~~~~~~~--v----~~~~v~~d~--------------------------~~~ 123 (169)
.++.++++|.-+.||. |-.....+.++..+...+ + .|+.||-+. -..
T Consensus 138 ~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~ 217 (280)
T KOG2792|consen 138 LGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQ 217 (280)
T ss_pred ccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHHH
Confidence 3899999999999985 766666665555554431 1 467776422 125
Q ss_pred HHHhCCCCCC--c-----------EEEEE--c-CCceeeeeeCCCCHHHHHHHHHhhhc
Q 030928 124 IADTYRIEAL--P-----------TFILF--K-DGKPSDRFEGAFSKDQLIQRIENSLS 166 (169)
Q Consensus 124 l~~~~~v~~~--P-----------t~~~~--~-~g~~~~~~~G~~~~~~l~~~i~~~l~ 166 (169)
+|++|.|.-- | ++++| + +|+.+..+--..+.+++.+.|.+.++
T Consensus 218 vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v~ 276 (280)
T KOG2792|consen 218 VAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHVA 276 (280)
T ss_pred HHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHHH
Confidence 6677766522 2 33333 4 88888776667899999988877664
No 245
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=94.33 E-value=0.34 Score=28.81 Aligned_cols=56 Identities=16% Similarity=0.317 Sum_probs=35.9
Q ss_pred EEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCC----chhHHHhCCCCCCcEEEEEcCCce
Q 030928 83 VDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEK----YPQIADTYRIEALPTFILFKDGKP 144 (169)
Q Consensus 83 v~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~----~~~l~~~~~v~~~Pt~~~~~~g~~ 144 (169)
.+|+.++|+.|++.+-.+++..- .+....++..+ .+++.+......+|++.. +|..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi----~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~ 61 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGL----ELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVD--NGFV 61 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCC----CCEEEEecCccCCcCCHHHHhhCcCCCCCEEEE--CCEE
Confidence 46889999999987766655422 24455555433 245555556778999854 4544
No 246
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=94.04 E-value=0.42 Score=31.62 Aligned_cols=22 Identities=36% Similarity=0.738 Sum_probs=19.6
Q ss_pred CchhHHHhCCCCCCcEEEEEcC
Q 030928 120 KYPQIADTYRIEALPTFILFKD 141 (169)
Q Consensus 120 ~~~~l~~~~~v~~~Pt~~~~~~ 141 (169)
-++.+.++|+|+.+|++++.++
T Consensus 59 IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 59 IDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred EChhHHhhCCceEcCEEEEEcC
Confidence 3589999999999999999876
No 247
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=93.98 E-value=1.1 Score=32.88 Aligned_cols=79 Identities=14% Similarity=0.323 Sum_probs=51.0
Q ss_pred EEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCc------------------hhHHHhCCCCC--CcEEEEEc
Q 030928 81 VLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKY------------------PQIADTYRIEA--LPTFILFK 140 (169)
Q Consensus 81 vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~------------------~~l~~~~~v~~--~Pt~~~~~ 140 (169)
||=+|++-.|.-|--....|.+++.+ . +|..+..++|.. +..++.++..+ +|.+++
T Consensus 1 vVELFTSQGCsSCPpAD~~L~~l~~~-~-~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vV-- 76 (202)
T PF06764_consen 1 VVELFTSQGCSSCPPADRLLSELAAR-P-DVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVV-- 76 (202)
T ss_dssp EEEEEE-TT-TT-HHHHHHHHHHHHH-T-SSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEE--
T ss_pred CeeEecCCCCCCCcHHHHHHHHhhcC-C-CEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEE--
Confidence 34578888999999999999999999 3 466666665531 23444566554 588888
Q ss_pred CCceeeeeeCCCCHHHHHHHHHhhhc
Q 030928 141 DGKPSDRFEGAFSKDQLIQRIENSLS 166 (169)
Q Consensus 141 ~g~~~~~~~G~~~~~~l~~~i~~~l~ 166 (169)
||+. ..+..+...+...|++..+
T Consensus 77 nG~~---~~~g~~~~~~~~ai~~~~~ 99 (202)
T PF06764_consen 77 NGRE---HRVGSDRAAVEAAIQAARA 99 (202)
T ss_dssp TTTE---EEETT-HHHHHHHHHHHHH
T ss_pred CCee---eeeccCHHHHHHHHHHhhc
Confidence 8984 3446678888888877654
No 248
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=93.97 E-value=0.068 Score=34.71 Aligned_cols=75 Identities=17% Similarity=0.219 Sum_probs=41.3
Q ss_pred EEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCc----hhHHHhCCCCCCcEEEEEc-CCceeeee----eCCCC
Q 030928 83 VDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKY----PQIADTYRIEALPTFILFK-DGKPSDRF----EGAFS 153 (169)
Q Consensus 83 v~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~----~~l~~~~~v~~~Pt~~~~~-~g~~~~~~----~G~~~ 153 (169)
..|+.++|+.|++....|++. ++.|-.+|+.++ .++.+-++-.+.+.--+++ +|...... ....+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~l~~~~~~~ls 75 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH------GIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPYRKLGLADKDELS 75 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc------CCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchHHHcCCccccCCC
Confidence 578999999999998777552 355555665442 2333333433433323332 33322111 24556
Q ss_pred HHHHHHHHHh
Q 030928 154 KDQLIQRIEN 163 (169)
Q Consensus 154 ~~~l~~~i~~ 163 (169)
.+++.++|.+
T Consensus 76 ~~e~~~~l~~ 85 (105)
T cd02977 76 DEEALELMAE 85 (105)
T ss_pred HHHHHHHHHh
Confidence 7777777654
No 249
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=93.89 E-value=0.36 Score=28.56 Aligned_cols=69 Identities=10% Similarity=0.201 Sum_probs=40.4
Q ss_pred EEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCc-hhHHHhCCCCCCcEEEEEcCCceeeeeeCCCCHHHHHHHH
Q 030928 83 VDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKY-PQIADTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRI 161 (169)
Q Consensus 83 v~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~-~~l~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i 161 (169)
.+|+.++|+.|++.+-.+++..-. +....++.... +++.+......+|++. .+|..+. +...|.++|
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~----~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~~l~------es~aI~~yL 69 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVS----VEIIDVDPDNPPEDLAELNPYGTVPTLV--DRDLVLY------ESRIIMEYL 69 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCc----cEEEEcCCCCCCHHHHhhCCCCCCCEEE--ECCEEEE------cHHHHHHHH
Confidence 468889999999988666443222 33444554432 3455555677899764 3554332 344555555
Q ss_pred Hh
Q 030928 162 EN 163 (169)
Q Consensus 162 ~~ 163 (169)
++
T Consensus 70 ~~ 71 (73)
T cd03059 70 DE 71 (73)
T ss_pred Hh
Confidence 43
No 250
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=93.86 E-value=0.41 Score=29.94 Aligned_cols=59 Identities=14% Similarity=0.221 Sum_probs=37.0
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCc-hhHHHhCCCCCCcEEEEEcCCcee
Q 030928 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKY-PQIADTYRIEALPTFILFKDGKPS 145 (169)
Q Consensus 82 vv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~-~~l~~~~~v~~~Pt~~~~~~g~~~ 145 (169)
+.+|+.+.|++|++.+-.+.+..- .+.+..++.... +++.+......+|.+.. ++|..+
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~gl----~~~~~~v~~~~~~~~~~~~np~~~vPvL~~-~~g~~l 78 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKNI----PHEVININLKDKPDWFLEKNPQGKVPALEI-DEGKVV 78 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCC----CCeEEEeCCCCCcHHHHhhCCCCCcCEEEE-CCCCEE
Confidence 556778899999988766544321 355556665443 33555556778999875 225543
No 251
>PHA03075 glutaredoxin-like protein; Provisional
Probab=93.77 E-value=0.13 Score=33.99 Aligned_cols=30 Identities=23% Similarity=0.456 Sum_probs=26.0
Q ss_pred CcEEEEEEcCCChhhhhhhHHHHHHHHHhc
Q 030928 79 KPVLVDFYATWCGPCQYMAPILNEVGAALK 108 (169)
Q Consensus 79 ~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~ 108 (169)
|.++|+|..|-|+-|......+.++..+|.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 568999999999999999999977777764
No 252
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=93.60 E-value=0.084 Score=38.10 Aligned_cols=37 Identities=24% Similarity=0.434 Sum_probs=29.3
Q ss_pred hhHHHhCCCCCCcEEEEEcCCceeeeeeCCCCHHHHHHHHH
Q 030928 122 PQIADTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIE 162 (169)
Q Consensus 122 ~~l~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~ 162 (169)
...+.++||.|+||+++ +|+. ...|..+.+.+.+.|+
T Consensus 165 ~~~a~~~gv~G~Pt~vv--~g~~--~~~G~~~~~~~~~~i~ 201 (201)
T cd03024 165 EARARQLGISGVPFFVF--NGKY--AVSGAQPPEVFLQALR 201 (201)
T ss_pred HHHHHHCCCCcCCEEEE--CCeE--eecCCCCHHHHHHHhC
Confidence 35667899999999998 7753 3689999999887763
No 253
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=93.58 E-value=0.15 Score=33.89 Aligned_cols=34 Identities=18% Similarity=0.198 Sum_probs=25.2
Q ss_pred EEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCch
Q 030928 83 VDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYP 122 (169)
Q Consensus 83 v~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~ 122 (169)
..|+.++|+.|++....|++ . ++.|-.+|..+.+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-----~-~i~~~~idi~~~~ 35 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA-----N-GIEYQFIDIGEDG 35 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH-----c-CCceEEEecCCCh
Confidence 46889999999999977765 2 3666677766543
No 254
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=93.51 E-value=0.61 Score=33.82 Aligned_cols=87 Identities=17% Similarity=0.243 Sum_probs=54.3
Q ss_pred CCcEEEEEE-cCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC----------------------------chhHHHh
Q 030928 78 DKPVLVDFY-ATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEK----------------------------YPQIADT 127 (169)
Q Consensus 78 ~~~vvv~f~-~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~d~----------------------------~~~l~~~ 127 (169)
++.+++.|| ++--+.|-.....+.+.+.++.. ++.++.+.+|. +.++++.
T Consensus 33 gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ 112 (194)
T COG0450 33 GKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIARA 112 (194)
T ss_pred CcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHHHHHhcHHhcCCccceecceEEcCchhHHHH
Confidence 466777676 44455666667777777776654 47777776543 4478888
Q ss_pred CCCCCCc------EEEEE-cCCceeeeeeC----CCCHHHHHHHHHhh
Q 030928 128 YRIEALP------TFILF-KDGKPSDRFEG----AFSKDQLIQRIENS 164 (169)
Q Consensus 128 ~~v~~~P------t~~~~-~~g~~~~~~~G----~~~~~~l~~~i~~~ 164 (169)
||+..-. .++++ .+|.+...... .++.+++.+.|+.+
T Consensus 113 ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~idAl 160 (194)
T COG0450 113 YGVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDAL 160 (194)
T ss_pred cCCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHH
Confidence 8876322 24444 58877654432 35678887777654
No 255
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=93.04 E-value=1.6 Score=28.42 Aligned_cols=91 Identities=9% Similarity=0.240 Sum_probs=57.1
Q ss_pred ChhhHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEcC----
Q 030928 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKD---- 141 (169)
Q Consensus 66 ~~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~---- 141 (169)
+.+++++++...++.++|-|+..--+ .....+.+++..+.+.+.|+.... .++.+++++.. |.+++|+.
T Consensus 7 s~~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~~---~~~~~~~~~~~-~~vvl~rp~~~~ 79 (107)
T cd03068 7 TLKQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTFD---SEIFKSLKVSP-GQLVVFQPEKFQ 79 (107)
T ss_pred CHHHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEECh---HHHHHhcCCCC-CceEEECcHHHh
Confidence 34566776655435666666655332 356678889999877788865543 46777888864 56666621
Q ss_pred ---CceeeeeeCC-CCHHH-HHHHHHh
Q 030928 142 ---GKPSDRFEGA-FSKDQ-LIQRIEN 163 (169)
Q Consensus 142 ---g~~~~~~~G~-~~~~~-l~~~i~~ 163 (169)
-.....|.|. .+.++ |.+||++
T Consensus 80 ~k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 80 SKYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred hhcCcceeeeeccccchHHHHHHHHhc
Confidence 1122345666 56655 9999875
No 256
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=92.73 E-value=0.65 Score=27.34 Aligned_cols=57 Identities=18% Similarity=0.241 Sum_probs=35.6
Q ss_pred EEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCC----chhHHHhCCCCCCcEEEEEcCCce
Q 030928 83 VDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEK----YPQIADTYRIEALPTFILFKDGKP 144 (169)
Q Consensus 83 v~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~----~~~l~~~~~v~~~Pt~~~~~~g~~ 144 (169)
.+|+.++|++|++.+-.+.+..- .+....++... .+++.+......+|++.. .+|..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l----~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~-~~~~~ 62 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGI----DVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL-DDGTV 62 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCC----CceEEEeecccCccCCHHHHhhCCCCCCCEEEe-CCCCE
Confidence 46888999999998877655422 23444555422 234555566778999865 34543
No 257
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=92.51 E-value=0.23 Score=33.77 Aligned_cols=33 Identities=18% Similarity=0.278 Sum_probs=22.8
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCC
Q 030928 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEK 120 (169)
Q Consensus 82 vv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~ 120 (169)
+..|+.++|+.|++.+..|++. ++.|-.+|+.+
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~------gi~~~~idi~~ 34 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH------DIPFTERNIFS 34 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc------CCCcEEeeccC
Confidence 4578899999999988766443 24555555543
No 258
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.27 E-value=0.26 Score=30.04 Aligned_cols=58 Identities=19% Similarity=0.319 Sum_probs=35.7
Q ss_pred EEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeC------------CCch--hHHHhCCCCCCcEEEEEcCCcee
Q 030928 83 VDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDT------------EKYP--QIADTYRIEALPTFILFKDGKPS 145 (169)
Q Consensus 83 v~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~------------d~~~--~l~~~~~v~~~Pt~~~~~~g~~~ 145 (169)
+.|++..||.|.....+++++.-. ..++.|-. |..+ +-.+..|--|+|.++.- +|+++
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~----yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~-d~~vV 76 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVD----YDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTD-DGKVV 76 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCC----ceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeC-CCcEE
Confidence 679999999999888777665433 33333321 1111 22445677799997664 56554
No 259
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=91.90 E-value=0.24 Score=32.51 Aligned_cols=58 Identities=21% Similarity=0.378 Sum_probs=39.9
Q ss_pred EEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCC--CCcEEEE-EcCCc
Q 030928 84 DFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIE--ALPTFIL-FKDGK 143 (169)
Q Consensus 84 ~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~--~~Pt~~~-~~~g~ 143 (169)
.||..+|+.|......+.+... .+.+.|+.+..+...++.+.+++. ..-+.+. .++|+
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 61 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDR--GGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDGE 61 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCC--CCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCCC
Confidence 3899999999999988877722 245888777556666666777765 2333333 46776
No 260
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=91.86 E-value=0.22 Score=35.50 Aligned_cols=34 Identities=29% Similarity=0.402 Sum_probs=26.6
Q ss_pred hHHHhCCCCCCcEEEEEcCCceeeeeeCCCCHHHHHHHH
Q 030928 123 QIADTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRI 161 (169)
Q Consensus 123 ~l~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i 161 (169)
..+.++||.|+|++++ ||+ .+.|....+.+.+.|
T Consensus 158 ~~a~~~gi~gvPtfvv--~g~---~~~G~~~l~~~~~~l 191 (192)
T cd03022 158 EEAIARGVFGVPTFVV--DGE---MFWGQDRLDMLEEAL 191 (192)
T ss_pred HHHHHcCCCcCCeEEE--CCe---eecccccHHHHHHHh
Confidence 5567899999999998 786 456887777776655
No 261
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=91.62 E-value=0.07 Score=33.26 Aligned_cols=55 Identities=22% Similarity=0.245 Sum_probs=45.3
Q ss_pred EEEcCCChhhhhhhHHHHHHHHHh-cCCeEEEEEeCCCchhHHHhCCCCCCcEEEE
Q 030928 84 DFYATWCGPCQYMAPILNEVGAAL-KDKIQVVKIDTEKYPQIADTYRIEALPTFIL 138 (169)
Q Consensus 84 ~f~~~~C~~C~~~~~~l~~~~~~~-~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~ 138 (169)
+|-+..-+........+..+.+++ ++.+.+=.||+.+++++++.++|-.+||++-
T Consensus 2 LyV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLik 57 (82)
T PF07689_consen 2 LYVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVATPTLIK 57 (82)
T ss_dssp EEESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEECHHHHHT
T ss_pred eEECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeeecceEee
Confidence 355666677788888888888874 4568888999999999999999999999653
No 262
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=91.13 E-value=0.21 Score=32.62 Aligned_cols=33 Identities=12% Similarity=0.022 Sum_probs=23.0
Q ss_pred EEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCc
Q 030928 83 VDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKY 121 (169)
Q Consensus 83 v~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~ 121 (169)
..|+.++|+.|++.+..|++- ++.|-.+|..+.
T Consensus 2 ~iy~~~~C~~crka~~~L~~~------~i~~~~~di~~~ 34 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR------GVAYTFHDYRKD 34 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc------CCCeEEEecccC
Confidence 578999999999988776543 255555555443
No 263
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=90.61 E-value=0.38 Score=38.08 Aligned_cols=79 Identities=19% Similarity=0.188 Sum_probs=46.5
Q ss_pred CCChhhh-hhhHHHHHHHHHhcC---CeEEEEEeCC-Cch--hHHHhCCCCCCc-EEEEEcCCceeeeeeCCCCHHHHHH
Q 030928 88 TWCGPCQ-YMAPILNEVGAALKD---KIQVVKIDTE-KYP--QIADTYRIEALP-TFILFKDGKPSDRFEGAFSKDQLIQ 159 (169)
Q Consensus 88 ~~C~~C~-~~~~~l~~~~~~~~~---~v~~~~v~~d-~~~--~l~~~~~v~~~P-t~~~~~~g~~~~~~~G~~~~~~l~~ 159 (169)
|.|+.|. .......++.+.+.+ .+++...-|. +.+ .-...+||.+-+ .+++|.+|+++....+..-.+++.+
T Consensus 272 PgCgR~~~D~~~la~~vee~~~~~~~PlkIAVmGC~VNgpGEa~~aDIGIaG~~~~~~vf~~Gk~v~kv~~~~~~~~l~~ 351 (360)
T PRK00366 272 PTCGRTEFDVIQELAEVEQRLEHIKMPLKVAVMGCVVNGPGEAKEADIGIAGGNPKGPVFVDGEKIKTLPEENIVEELEA 351 (360)
T ss_pred CCCCCCcccHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCchhhCcEeEecCCCceEEEECCEEeeeeChHhHHHHHHH
Confidence 4455543 223344455555544 2666666664 322 334467877655 4888899999888776655666666
Q ss_pred HHHhhhc
Q 030928 160 RIENSLS 166 (169)
Q Consensus 160 ~i~~~l~ 166 (169)
.|++..+
T Consensus 352 ~i~~~~~ 358 (360)
T PRK00366 352 EIEAYAE 358 (360)
T ss_pred HHHHHHh
Confidence 6665543
No 264
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=90.40 E-value=2.6 Score=31.61 Aligned_cols=47 Identities=17% Similarity=0.345 Sum_probs=37.5
Q ss_pred HHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC----CeEEEEEeCC
Q 030928 73 LLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKD----KIQVVKIDTE 119 (169)
Q Consensus 73 ~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~----~v~~~~v~~d 119 (169)
+....|+++||-+-..+|..|......|+.+..++.. +|.|+.||--
T Consensus 21 m~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~ 71 (238)
T PF04592_consen 21 MLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ 71 (238)
T ss_pred hhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC
Confidence 3344689999999999999999988888888766542 4899999853
No 265
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=90.00 E-value=1.6 Score=33.09 Aligned_cols=57 Identities=16% Similarity=0.151 Sum_probs=38.2
Q ss_pred cCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCC-CCCCcEEEEEc
Q 030928 76 KSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYR-IEALPTFILFK 140 (169)
Q Consensus 76 ~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~-v~~~Pt~~~~~ 140 (169)
..+|+.+++..+.|||.|-..+=.|-....++++ +.+..-..+. .+ -..+|++.|..
T Consensus 56 ~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn-~~l~~~~S~~-------~d~~pn~Ptl~F~~ 113 (249)
T PF06053_consen 56 PNGKPEVIFIGWEGCPYCAAESWALYIALSRFGN-FSLEYHYSDP-------YDNYPNTPTLIFNN 113 (249)
T ss_pred CCCeeEEEEEecccCccchhhHHHHHHHHHhcCC-eeeEEeecCc-------ccCCCCCCeEEEec
Confidence 4589999999999999999887666666677765 4333222222 11 14678877653
No 266
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=89.99 E-value=7 Score=29.72 Aligned_cols=62 Identities=26% Similarity=0.393 Sum_probs=38.3
Q ss_pred HHhcCCCcEEEEEEcCC------ChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHh----CCCCCCc
Q 030928 73 LLQKSDKPVLVDFYATW------CGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADT----YRIEALP 134 (169)
Q Consensus 73 ~~~~~~~~vvv~f~~~~------C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~----~~v~~~P 134 (169)
++.+-+++|-|.+|.+. -..=+.+...|++++..-++++.+-.||.+.+++..++ +|++.++
T Consensus 19 ~L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi~~~~ 90 (271)
T PF09822_consen 19 VLKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGIQPVQ 90 (271)
T ss_pred HHHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCCCccc
Confidence 34344556666666554 33334445555555555555799888998777666555 8888744
No 267
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=89.80 E-value=0.85 Score=30.10 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=23.5
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCc
Q 030928 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKY 121 (169)
Q Consensus 82 vv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~ 121 (169)
+..|+.++|+.|++....|++. ++.|-.+|..++
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~------gi~~~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH------QIPFEERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCceEEEecCCC
Confidence 4568899999999988777552 245555665443
No 268
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=89.26 E-value=0.6 Score=33.31 Aligned_cols=28 Identities=25% Similarity=0.503 Sum_probs=25.2
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcC
Q 030928 82 LVDFYATWCGPCQYMAPILNEVGAALKD 109 (169)
Q Consensus 82 vv~f~~~~C~~C~~~~~~l~~~~~~~~~ 109 (169)
+.+|+.+.||+|-...+.++++.+++++
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~~ 30 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYGG 30 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhCC
Confidence 6689999999999999999999999843
No 269
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=88.51 E-value=2.6 Score=28.88 Aligned_cols=66 Identities=18% Similarity=0.306 Sum_probs=49.4
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCC-c-EEEEEcCCcee
Q 030928 78 DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEAL-P-TFILFKDGKPS 145 (169)
Q Consensus 78 ~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~-P-t~~~~~~g~~~ 145 (169)
+++-.|.+|.-.|+.|......|.+.-. ++.+.|..+..+....+.+..|+.-- + ++++.++|+..
T Consensus 6 ~~p~~vvlyDG~C~lC~~~vrfLi~~D~--~~~i~f~~~q~e~g~~~l~~~~l~~~~~~s~~~~~~g~~~ 73 (137)
T COG3011 6 KKPDLVVLYDGVCPLCDGWVRFLIRRDQ--GGRIRFAALQSEPGQALLEAAGLDPEDVDSVLLVEAGQLL 73 (137)
T ss_pred CCCCEEEEECCcchhHHHHHHHHHHhcc--CCcEEEEeccCchhhhHHhhcCCChhhhheeeEecCCceE
Confidence 5677888999999999997766654432 23699999999988888888887644 3 46666777754
No 270
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=88.29 E-value=4.1 Score=27.44 Aligned_cols=67 Identities=25% Similarity=0.352 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHh---c-CCeEEEEEeCCCch----------hHHHhCCCCCCcEEEEEcCCceeeeeeCCCCHHHHHHHH
Q 030928 96 MAPILNEVGAAL---K-DKIQVVKIDTEKYP----------QIADTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRI 161 (169)
Q Consensus 96 ~~~~l~~~~~~~---~-~~v~~~~v~~d~~~----------~l~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i 161 (169)
..|.|.+++..+ + ..+.+...|...++ ++.++-|...+|-+++ ||+++. .-.+++.++|.+|+
T Consensus 22 vd~eL~~~a~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlV--dGeiv~-~G~YPt~eEl~~~~ 98 (123)
T PF06953_consen 22 VDPELVRFAADLDWLKEQGVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLV--DGEIVK-TGRYPTNEELAEWL 98 (123)
T ss_dssp --HHHHHHHHHHHHHHHTT-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEE--TTEEEE-ESS---HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEE--CCEEEE-ecCCCCHHHHHHHh
Confidence 445554444322 1 25888888887765 3344579999999988 999764 35577899999998
Q ss_pred Hhhh
Q 030928 162 ENSL 165 (169)
Q Consensus 162 ~~~l 165 (169)
.-..
T Consensus 99 ~i~~ 102 (123)
T PF06953_consen 99 GISF 102 (123)
T ss_dssp T--G
T ss_pred CCCc
Confidence 5443
No 271
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=88.21 E-value=2.3 Score=24.89 Aligned_cols=57 Identities=21% Similarity=0.285 Sum_probs=34.6
Q ss_pred EEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCC----chhHHHhCCCCCCcEEEEEcCCcee
Q 030928 83 VDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEK----YPQIADTYRIEALPTFILFKDGKPS 145 (169)
Q Consensus 83 v~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~----~~~l~~~~~v~~~Pt~~~~~~g~~~ 145 (169)
.+|+.+.|+.|++.+-.+++..- .+....++... .+++.+......+|++.. +|..+
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~~~----~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~i 62 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALLGI----PYEWVEVDILKGETRTPEFLALNPNGEVPVLEL--DGRVL 62 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHcCC----CcEEEEecCCCcccCCHHHHHhCCCCCCCEEEE--CCEEE
Confidence 35788999999988766654322 24445555422 234444445668899865 56544
No 272
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.88 E-value=2.1 Score=27.70 Aligned_cols=54 Identities=22% Similarity=0.352 Sum_probs=34.4
Q ss_pred cCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCC-CCCCcEEE-EEcCCcee
Q 030928 87 ATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYR-IEALPTFI-LFKDGKPS 145 (169)
Q Consensus 87 ~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~-v~~~Pt~~-~~~~g~~~ 145 (169)
.|-|+...+....|.. ++- +.|..||+-.++++.+.+. ...+||+= +|-+|+.+
T Consensus 27 ~P~CGFS~~~vqiL~~----~g~-v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GEfv 82 (105)
T COG0278 27 FPQCGFSAQAVQILSA----CGV-VDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGEFV 82 (105)
T ss_pred CCCCCccHHHHHHHHH----cCC-cceeEEeeccCHHHHhccHhhcCCCCCceeeECCEEe
Confidence 4678888777655533 322 7788899888888876654 33556632 33388754
No 273
>PRK12559 transcriptional regulator Spx; Provisional
Probab=87.54 E-value=0.68 Score=31.49 Aligned_cols=21 Identities=24% Similarity=0.501 Sum_probs=17.3
Q ss_pred EEEEEcCCChhhhhhhHHHHH
Q 030928 82 LVDFYATWCGPCQYMAPILNE 102 (169)
Q Consensus 82 vv~f~~~~C~~C~~~~~~l~~ 102 (169)
+..|+.++|+.|+.....|++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~ 22 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEE 22 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH
Confidence 567899999999998866654
No 274
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=87.28 E-value=1.6 Score=31.94 Aligned_cols=40 Identities=20% Similarity=0.497 Sum_probs=29.6
Q ss_pred chhHHHhCCCCCCcEEEEEcCCceeeeeeCCCCHHHHHHHH
Q 030928 121 YPQIADTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRI 161 (169)
Q Consensus 121 ~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i 161 (169)
++.+.++|+|+.+|++++.- +.-..+..|.+..++-.+.+
T Consensus 151 DP~lF~~F~I~~VPafVv~C-~~~yD~I~GNIsl~~ALe~i 190 (212)
T PRK13730 151 DPTLFSQYGIRSVPALVVFC-SQGYDIIRGNLRVGQALEKV 190 (212)
T ss_pred CHHHHHhcCCccccEEEEEc-CCCCCEEEecccHHHHHHHH
Confidence 57899999999999999874 34456777887765544443
No 275
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=86.83 E-value=2.6 Score=27.69 Aligned_cols=44 Identities=23% Similarity=0.295 Sum_probs=37.5
Q ss_pred cCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC
Q 030928 76 KSDKPVLVDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEK 120 (169)
Q Consensus 76 ~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~d~ 120 (169)
-.+++++|.=.|+.|+.-. ....|+++.++|++ .+.++..-|+.
T Consensus 19 y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnq 63 (108)
T PF00255_consen 19 YKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQ 63 (108)
T ss_dssp GTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBST
T ss_pred cCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHH
Confidence 3589999999999999999 77899999999984 58888887754
No 276
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=85.86 E-value=1 Score=35.46 Aligned_cols=79 Identities=18% Similarity=0.153 Sum_probs=50.2
Q ss_pred CChhhhhhhHHH----HHHHHHhcC---CeEEEEEeCCCc-h--hHHHhCCCCC--CcEEEEEcCCceeeeeeCCCCHHH
Q 030928 89 WCGPCQYMAPIL----NEVGAALKD---KIQVVKIDTEKY-P--QIADTYRIEA--LPTFILFKDGKPSDRFEGAFSKDQ 156 (169)
Q Consensus 89 ~C~~C~~~~~~l----~~~~~~~~~---~v~~~~v~~d~~-~--~l~~~~~v~~--~Pt~~~~~~g~~~~~~~G~~~~~~ 156 (169)
-||.|-+..-.+ .++.+++.. .+.+..+-|-.| + ..-..+|+.+ -|...+|++|+.+.+..+..-.++
T Consensus 263 aCP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVNGPGEak~AdiGia~~~~~~~~~f~~g~~~~~~~~~~~~ee 342 (361)
T COG0821 263 ACPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVNGPGEAKHADIGIAGGGKGSGPVFVKGEIIKKLPEEDIVEE 342 (361)
T ss_pred ECCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEecCCcchhccceeeecCCCCeeEEEECCeEEEecChhhHHHH
Confidence 688886554433 333333332 244444444332 1 2223566653 588899999999999888888899
Q ss_pred HHHHHHhhhcc
Q 030928 157 LIQRIENSLSV 167 (169)
Q Consensus 157 l~~~i~~~l~~ 167 (169)
+.+.++++.+.
T Consensus 343 l~~~i~~~~~~ 353 (361)
T COG0821 343 LEALIEAYAEE 353 (361)
T ss_pred HHHHHHHHHHH
Confidence 99998887654
No 277
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=85.51 E-value=4 Score=24.39 Aligned_cols=57 Identities=14% Similarity=0.098 Sum_probs=35.3
Q ss_pred EEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCC----chhHHHhCCCCCCcEEEEEcCCcee
Q 030928 83 VDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEK----YPQIADTYRIEALPTFILFKDGKPS 145 (169)
Q Consensus 83 v~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~----~~~l~~~~~v~~~Pt~~~~~~g~~~ 145 (169)
.+|+.+.|+.|++.+-.+++..- .+.+..++... .+++.+--.-..+|++. .+|..+
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~gl----~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~--~~g~~l 62 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKGL----RCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLI--HGDNII 62 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcCC----CCEEEEecCCcCccCCHHHHHhCcCCCCCEEE--ECCEEE
Confidence 46888899999887744433322 35566666532 23455555677889985 367654
No 278
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=83.59 E-value=8.7 Score=26.12 Aligned_cols=100 Identities=19% Similarity=0.278 Sum_probs=50.8
Q ss_pred CChhhHHHHHhcCCCcEEEEEEcCCChhh-hhhhHHHHHHHHH--hcCCeE--EEEEeCCCchhHHHhCC---CCCCcEE
Q 030928 65 QTFSSLDDLLQKSDKPVLVDFYATWCGPC-QYMAPILNEVGAA--LKDKIQ--VVKIDTEKYPQIADTYR---IEALPTF 136 (169)
Q Consensus 65 ~~~~~~~~~~~~~~~~vvv~f~~~~C~~C-~~~~~~l~~~~~~--~~~~v~--~~~v~~d~~~~l~~~~~---v~~~Pt~ 136 (169)
.+.++.++.+.+.+..++| +--+-|+=- ...+|........ .++++. |...|-+.. +-++.|= -.+-|.+
T Consensus 22 ~T~e~Vd~~~~~~~GTtlV-vVNSVCGCAag~ARPa~~~al~~~kkPD~lvTVFAGqDkEAt-~~aR~yf~~~pPSSPS~ 99 (136)
T PF06491_consen 22 TTAEEVDEALKNKEGTTLV-VVNSVCGCAAGNARPAAAMALQNDKKPDHLVTVFAGQDKEAT-AKAREYFEPYPPSSPSI 99 (136)
T ss_dssp -SHHHHHHHHHH--SEEEE-EEE-SSHHHHHTHHHHHHHHHHHSS--SEEEEEETTTSHHHH-HHHHHTSTTS---SSEE
T ss_pred CCHHHHHHHHhCCCCcEEE-EEeccccccccccCHHHHHHHhCCCCCCceEEeccCCCHHHH-HHHHHhcCCCCCCCchh
Confidence 3556777777754445555 444667522 2456655443332 223322 222232222 2334443 2355789
Q ss_pred EEEcCCceeeee----eCCCCHHHHHHHHHhhhc
Q 030928 137 ILFKDGKPSDRF----EGAFSKDQLIQRIENSLS 166 (169)
Q Consensus 137 ~~~~~g~~~~~~----~G~~~~~~l~~~i~~~l~ 166 (169)
.+|++|++++.+ +...+.++|.+-|..+++
T Consensus 100 ALfKdGelvh~ieRh~IEGr~a~~Ia~~L~~af~ 133 (136)
T PF06491_consen 100 ALFKDGELVHFIERHHIEGRPAEEIAENLQDAFD 133 (136)
T ss_dssp EEEETTEEEEEE-GGGTTTS-HHHHHHHHHHHHH
T ss_pred eeeeCCEEEEEeehhhcCCCCHHHHHHHHHHHHH
Confidence 999999988654 345678888877776653
No 279
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=83.28 E-value=1.4 Score=29.98 Aligned_cols=21 Identities=19% Similarity=0.392 Sum_probs=16.6
Q ss_pred EEEEEcCCChhhhhhhHHHHH
Q 030928 82 LVDFYATWCGPCQYMAPILNE 102 (169)
Q Consensus 82 vv~f~~~~C~~C~~~~~~l~~ 102 (169)
+..|+.++|+.|+.....|++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~ 22 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNA 22 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHH
Confidence 457889999999998866643
No 280
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=83.13 E-value=7.4 Score=22.97 Aligned_cols=58 Identities=17% Similarity=0.152 Sum_probs=35.2
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCC----chhHHHhCCCCCCcEEEEEcCCcee
Q 030928 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEK----YPQIADTYRIEALPTFILFKDGKPS 145 (169)
Q Consensus 82 vv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~----~~~l~~~~~v~~~Pt~~~~~~g~~~ 145 (169)
+.+|+.+.|+.|++..-.+++..- .+.+..++... .+++.+......+|++.. +|..+
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i----~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~--~g~~l 63 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGV----DYELVPVDLTKGEHKSPEHLARNPFGQIPALED--GDLKL 63 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCC----CcEEEEeCccccccCCHHHHhhCCCCCCCEEEE--CCEEE
Confidence 456777889999988766654322 24444555431 234555566788998753 56543
No 281
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=82.90 E-value=1.7 Score=30.94 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=17.3
Q ss_pred hHHHhCCCCCCcEEEEEcCCc
Q 030928 123 QIADTYRIEALPTFILFKDGK 143 (169)
Q Consensus 123 ~l~~~~~v~~~Pt~~~~~~g~ 143 (169)
..+.++||.|+||+++.+++.
T Consensus 160 ~~a~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 160 KLARELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHHHcCCCccCEEEEEeCCe
Confidence 556689999999999987654
No 282
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=82.56 E-value=14 Score=27.28 Aligned_cols=81 Identities=15% Similarity=0.356 Sum_probs=50.6
Q ss_pred hHHHHHhcCCCcEEEEEE-----cCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCCch--------------------
Q 030928 69 SLDDLLQKSDKPVLVDFY-----ATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEKYP-------------------- 122 (169)
Q Consensus 69 ~~~~~~~~~~~~vvv~f~-----~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~d~~~-------------------- 122 (169)
.+.++.....+.+|..|. ...|+.|..+...+......+.. .+.|+.|.-.-..
T Consensus 59 ~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSraP~~~i~afk~rmGW~~pw~Ss~g 138 (211)
T PF05988_consen 59 SLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSRAPLEKIEAFKRRMGWTFPWYSSYG 138 (211)
T ss_pred cHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCCCHHHHHHHHHhcCCCceEEEcCC
Confidence 455565555666666666 45699999999888554444443 4889888644322
Q ss_pred -hHHHhCCC-----CCCcEEEEE-c-CCceeeeee
Q 030928 123 -QIADTYRI-----EALPTFILF-K-DGKPSDRFE 149 (169)
Q Consensus 123 -~l~~~~~v-----~~~Pt~~~~-~-~g~~~~~~~ 149 (169)
++...|++ ...|-+-+| + +|++.+.|.
T Consensus 139 s~Fn~D~~~~~~~~~~~~g~svF~Rdg~~VfhTys 173 (211)
T PF05988_consen 139 SDFNYDFGVSFDEGGEMPGLSVFLRDGGRVFHTYS 173 (211)
T ss_pred CcccccccceeccCCCceeEEEEEEcCCEEEEEee
Confidence 23334666 567877766 4 555555553
No 283
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=81.14 E-value=8.9 Score=22.57 Aligned_cols=69 Identities=14% Similarity=0.114 Sum_probs=38.8
Q ss_pred EEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCC-C-CCCcEEEEEcCCceeeeeeCCCCHHHHHHH
Q 030928 83 VDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYR-I-EALPTFILFKDGKPSDRFEGAFSKDQLIQR 160 (169)
Q Consensus 83 v~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~-v-~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~ 160 (169)
.+|+.+.|++|++..=.+.+..- .+....++.....+...+.+ . ..+|++.. +|..+. +-..+.++
T Consensus 2 ~Ly~~~~sp~~~~v~~~l~~~gl----~~~~~~~~~~~~~~~~~~~~p~~~~vP~l~~--~~~~l~------eS~aI~~y 69 (74)
T cd03058 2 KLLGAWASPFVLRVRIALALKGV----PYEYVEEDLGNKSELLLASNPVHKKIPVLLH--NGKPIC------ESLIIVEY 69 (74)
T ss_pred EEEECCCCchHHHHHHHHHHcCC----CCEEEEeCcccCCHHHHHhCCCCCCCCEEEE--CCEEee------hHHHHHHH
Confidence 35677899999998765544322 24444455433223333443 3 68998763 565432 34556666
Q ss_pred HHh
Q 030928 161 IEN 163 (169)
Q Consensus 161 i~~ 163 (169)
|++
T Consensus 70 L~~ 72 (74)
T cd03058 70 IDE 72 (74)
T ss_pred HHh
Confidence 654
No 284
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=80.76 E-value=14 Score=27.44 Aligned_cols=74 Identities=18% Similarity=0.306 Sum_probs=49.2
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEcCCceeeeeeCCCCHHHHHHHH
Q 030928 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRI 161 (169)
Q Consensus 82 vv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i 161 (169)
+=.|.-.+|..|-.+...++.= -+-+++.| ++....+.+.-+-+|-++|.+++ +|+.+ +.+..+.++++..+
T Consensus 13 VkI~~HktC~ssy~Lf~~L~nk--gll~~Vki--i~a~~p~f~~~~~~V~SvP~Vf~--DGel~--~~dpVdp~~ies~~ 84 (265)
T COG5494 13 VKIFTHKTCVSSYMLFEYLENK--GLLGKVKI--IDAELPPFLAFEKGVISVPSVFI--DGELV--YADPVDPEEIESIL 84 (265)
T ss_pred EEEEEecchHHHHHHHHHHHhc--CCCCCceE--EEcCCChHHHhhcceeecceEEE--cCeEE--EcCCCCHHHHHHHH
Confidence 3345567888888776655320 01124665 45666667777788999999777 89875 45677888887776
Q ss_pred Hh
Q 030928 162 EN 163 (169)
Q Consensus 162 ~~ 163 (169)
.-
T Consensus 85 ~G 86 (265)
T COG5494 85 SG 86 (265)
T ss_pred cC
Confidence 43
No 285
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=80.75 E-value=1.5 Score=34.87 Aligned_cols=76 Identities=25% Similarity=0.282 Sum_probs=43.3
Q ss_pred CChhhhhhhHHHHHHHHHh----c---CCeEEEEEeCCCc-hhHHH--hCCCC-CCc-EEEEEcCCceeeee-eCCCCHH
Q 030928 89 WCGPCQYMAPILNEVGAAL----K---DKIQVVKIDTEKY-PQIAD--TYRIE-ALP-TFILFKDGKPSDRF-EGAFSKD 155 (169)
Q Consensus 89 ~C~~C~~~~~~l~~~~~~~----~---~~v~~~~v~~d~~-~~l~~--~~~v~-~~P-t~~~~~~g~~~~~~-~G~~~~~ 155 (169)
.||.|-+..-.++++.++. . ..+++...-|-.| +.-++ .||+- +-| ...+|++|+.+.+. ....-.+
T Consensus 270 SCPtCGRt~~Dl~~~~~~ie~~l~~l~~~lkIAVMGCiVNGPGEa~~AD~GiaGgg~g~~~lf~~g~~v~k~~~ee~~vd 349 (359)
T PF04551_consen 270 SCPTCGRTEFDLQELVAEIEERLKHLKKGLKIAVMGCIVNGPGEAKDADIGIAGGGKGKGILFKKGEVVKKVIPEEEIVD 349 (359)
T ss_dssp E----TT--SHHHHHHHHHHHHCCCHHCG-EEEEESSTCCCHHHCTTSSEEEE-E-TTCEEEECTTEEEEEE-CSTCHHH
T ss_pred eCCCCCCccchHHHHHHHHHHHHhcCCCCceEEEEeeeecCCchhhhCceeeecCCCCeEEEEECCEEEEecCCHHHHHH
Confidence 4666665555555554433 2 2477877777655 33232 46655 334 38899999999987 6776677
Q ss_pred HHHHHHHhh
Q 030928 156 QLIQRIENS 164 (169)
Q Consensus 156 ~l~~~i~~~ 164 (169)
+|.+.|++.
T Consensus 350 ~L~~~I~~~ 358 (359)
T PF04551_consen 350 ELIELIEEH 358 (359)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 777777664
No 286
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=80.68 E-value=2.2 Score=28.23 Aligned_cols=21 Identities=10% Similarity=0.214 Sum_probs=17.0
Q ss_pred EEEEEcCCChhhhhhhHHHHH
Q 030928 82 LVDFYATWCGPCQYMAPILNE 102 (169)
Q Consensus 82 vv~f~~~~C~~C~~~~~~l~~ 102 (169)
+..|+.+.|..|++.+..|++
T Consensus 2 i~iy~~p~C~~crkA~~~L~~ 22 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEA 22 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHH
Confidence 457889999999998866654
No 287
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=80.27 E-value=3.3 Score=30.23 Aligned_cols=38 Identities=26% Similarity=0.340 Sum_probs=24.6
Q ss_pred hHHHhCCCCCCcEEEEEcC-CceeeeeeCCCCHHHHHHHH
Q 030928 123 QIADTYRIEALPTFILFKD-GKPSDRFEGAFSKDQLIQRI 161 (169)
Q Consensus 123 ~l~~~~~v~~~Pt~~~~~~-g~~~~~~~G~~~~~~l~~~i 161 (169)
+.+.+.||.|+|++++-++ |+ ...+-|.--.+.++++|
T Consensus 170 ~~A~~~Gv~GVP~fvv~~~~~~-~e~fwG~Drl~~~~~~l 208 (209)
T cd03021 170 DEALKYGAFGLPWIVVTNDKGK-TEMFFGSDRFEQVADFL 208 (209)
T ss_pred HHHHHcCCCCCCEEEEEcCCCC-ccceecCCcHHHHHHHh
Confidence 3445689999999988643 32 22566766666665554
No 288
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=79.86 E-value=13 Score=23.58 Aligned_cols=66 Identities=17% Similarity=0.227 Sum_probs=40.6
Q ss_pred CCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHh-CCCCCCcEEEEEcCCceeeeeeCCCCHHHHHHHHHhhh
Q 030928 88 TWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADT-YRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENSL 165 (169)
Q Consensus 88 ~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~-~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~~~l 165 (169)
.+|++|++.+=.+.+- +-.+.+..+|..+.++...+ .-...+|++. ++|..+ .+...|.++|++..
T Consensus 20 g~cpf~~rvrl~L~eK----gi~ye~~~vd~~~~p~~~~~~nP~g~vPvL~--~~~~~i------~eS~~I~eYLde~~ 86 (91)
T cd03061 20 GNCPFCQRLFMVLWLK----GVVFNVTTVDMKRKPEDLKDLAPGTQPPFLL--YNGEVK------TDNNKIEEFLEETL 86 (91)
T ss_pred CCChhHHHHHHHHHHC----CCceEEEEeCCCCCCHHHHHhCCCCCCCEEE--ECCEEe------cCHHHHHHHHHHHc
Confidence 5799999877555433 11245566776665544444 4467889654 356544 25677888887764
No 289
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=79.48 E-value=4.8 Score=30.91 Aligned_cols=80 Identities=16% Similarity=0.197 Sum_probs=45.6
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEe-CCC-----chhHHHhCCC-CCCcEEEEEc-CCceeeeee
Q 030928 78 DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKID-TEK-----YPQIADTYRI-EALPTFILFK-DGKPSDRFE 149 (169)
Q Consensus 78 ~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~-~d~-----~~~l~~~~~v-~~~Pt~~~~~-~g~~~~~~~ 149 (169)
.....|..|+..|..-..+.| .+...+=++ |+.|. .|+ +..+..+|.. .++|++..+- ..+.+ +.
T Consensus 74 ~~t~~IR~Y~sDCn~le~v~p----Aa~~~g~kv-~lGiw~tdd~~~~~~~til~ay~~~~~~d~v~~v~VGnEal--~r 146 (305)
T COG5309 74 SYTHSIRTYGSDCNTLENVLP----AAEASGFKV-FLGIWPTDDIHDAVEKTILSAYLPYNGWDDVTTVTVGNEAL--NR 146 (305)
T ss_pred cCCceEEEeeccchhhhhhHH----HHHhcCceE-EEEEeeccchhhhHHHHHHHHHhccCCCCceEEEEechhhh--hc
Confidence 345588899987766444443 333333123 33332 222 2245555653 4778766664 44444 35
Q ss_pred CCCCHHHHHHHHHhh
Q 030928 150 GAFSKDQLIQRIENS 164 (169)
Q Consensus 150 G~~~~~~l~~~i~~~ 164 (169)
|..+.++|.++|++.
T Consensus 147 ~~~tasql~~~I~~v 161 (305)
T COG5309 147 NDLTASQLIEYIDDV 161 (305)
T ss_pred CCCCHHHHHHHHHHH
Confidence 788999999998764
No 290
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=77.84 E-value=22 Score=25.10 Aligned_cols=87 Identities=21% Similarity=0.271 Sum_probs=50.2
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHHH-hcC-C-eEEEEEeCCCch-----------------------------hH
Q 030928 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAA-LKD-K-IQVVKIDTEKYP-----------------------------QI 124 (169)
Q Consensus 77 ~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~-~~~-~-v~~~~v~~d~~~-----------------------------~l 124 (169)
.+|+-+|..-|-.-..=..-.|.++.+... ++. + -.+..||.|+.. -+
T Consensus 36 ~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~d~yqtttIiN~dDAi~gt~~fVrss~e~~kk~~p~s~~vlD~~G~~ 115 (160)
T PF09695_consen 36 PGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPHDKYQTTTIINLDDAIWGTGGFVRSSAEDSKKEFPWSQFVLDSNGVV 115 (160)
T ss_pred CCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCccceeEEEEEecccccccchHHHHHHHHHhhhhCCCcEEEEcCCCce
Confidence 366666655544444434445566666555 442 2 234455655421 12
Q ss_pred HHhCCCCCC-cEEEEE-cCCceeeeeeCCCCHHHHHHHHHh
Q 030928 125 ADTYRIEAL-PTFILF-KDGKPSDRFEGAFSKDQLIQRIEN 163 (169)
Q Consensus 125 ~~~~~v~~~-Pt~~~~-~~g~~~~~~~G~~~~~~l~~~i~~ 163 (169)
.+.++...- -.++++ ++|++.....|.++.+++.+.|.-
T Consensus 116 ~~aW~L~~~~SaiiVlDK~G~V~F~k~G~Ls~~Ev~qVi~L 156 (160)
T PF09695_consen 116 RKAWQLQEESSAIIVLDKQGKVQFVKEGALSPAEVQQVIAL 156 (160)
T ss_pred eccccCCCCCceEEEEcCCccEEEEECCCCCHHHHHHHHHH
Confidence 222333322 244554 699999999999999999998854
No 291
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=77.45 E-value=4.2 Score=25.03 Aligned_cols=34 Identities=21% Similarity=0.431 Sum_probs=22.0
Q ss_pred CCcEEEEEc-CCceeeee-eCCCCHHHHHHHHHhhh
Q 030928 132 ALPTFILFK-DGKPSDRF-EGAFSKDQLIQRIENSL 165 (169)
Q Consensus 132 ~~Pt~~~~~-~g~~~~~~-~G~~~~~~l~~~i~~~l 165 (169)
.-|++++++ +|+++.++ ....+.+++.++|.+.+
T Consensus 41 ~~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~kg 76 (78)
T PF08806_consen 41 APPELVLLDEDGEEVERINIEKWKTDEIEEFLNEKG 76 (78)
T ss_dssp ---EEEEE-SSS--SEEEE-SSSSHCHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHHhC
Confidence 458999986 88876665 46779999999998754
No 292
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=77.17 E-value=14 Score=27.84 Aligned_cols=82 Identities=11% Similarity=0.131 Sum_probs=54.2
Q ss_pred CcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCC------------------CchhHHHhCCCCCCcEEEEEc
Q 030928 79 KPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTE------------------KYPQIADTYRIEALPTFILFK 140 (169)
Q Consensus 79 ~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d------------------~~~~l~~~~~v~~~Pt~~~~~ 140 (169)
..||=+|++-.|.-|--....+.+++.+- ++.-+..++| ......+.|+-.+++|=-.+-
T Consensus 42 ~~VVELfTSQGCsSCPPAd~~l~k~a~~~--~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQavv 119 (261)
T COG5429 42 LGVVELFTSQGCSSCPPADANLAKLADDP--GVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQAVV 119 (261)
T ss_pred ceEEEEeecCCcCCCChHHHHHHHhccCC--CEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchhee
Confidence 45666788889999988888888888763 2443333332 123556678888887754444
Q ss_pred CCceeeeeeCCCCHHHHHHHHHhhh
Q 030928 141 DGKPSDRFEGAFSKDQLIQRIENSL 165 (169)
Q Consensus 141 ~g~~~~~~~G~~~~~~l~~~i~~~l 165 (169)
||+... ...+..+|++.|...-
T Consensus 120 nGr~~~---~Gad~~~i~~~i~a~~ 141 (261)
T COG5429 120 NGRVHA---NGADPGAIEDAIAAMA 141 (261)
T ss_pred echhhh---cCCCHHHHHHHHHHhh
Confidence 888543 3557777888876543
No 293
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=77.12 E-value=4.9 Score=31.86 Aligned_cols=56 Identities=20% Similarity=0.398 Sum_probs=45.1
Q ss_pred eEEEEEeCCCchhHHHhCCCCCCcEEEEEc--CCceeeeeeCCCCHHHHHHHHHhhhc
Q 030928 111 IQVVKIDTEKYPQIADTYRIEALPTFILFK--DGKPSDRFEGAFSKDQLIQRIENSLS 166 (169)
Q Consensus 111 v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~--~g~~~~~~~G~~~~~~l~~~i~~~l~ 166 (169)
...+..|..+.+.+..-|.+..+|.+.+++ -|+.+.+..|...++++..-+.+.+.
T Consensus 133 wllV~~Dtseg~~~~~Fy~~~~~P~i~iiDp~Tge~v~~ws~vi~~~~fl~~l~~Fi~ 190 (356)
T KOG1364|consen 133 WLLVLDDTSEGQPFSAFYHISSLPHIAIIDPITGERVKRWSGVIEPEQFLSDLNEFID 190 (356)
T ss_pred EEEEeeccCCCCchhhheeccCCceEEEECCchhhhhhhhccccCHHHHHHHHHHHHh
Confidence 444456666777888999999999988885 79999999999998888877777664
No 294
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=76.61 E-value=15 Score=26.58 Aligned_cols=62 Identities=13% Similarity=0.224 Sum_probs=39.0
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCc-hhHHHhCCCCCCcEEEEEcCCcee
Q 030928 78 DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKY-PQIADTYRIEALPTFILFKDGKPS 145 (169)
Q Consensus 78 ~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~-~~l~~~~~v~~~Pt~~~~~~g~~~ 145 (169)
+...+.+|+.++|+.|++..-.+++..- .+.+..||.... +++.+..-...+|++.. +|..+
T Consensus 7 ~~~~~~Ly~~~~s~~~~rv~~~L~e~gl----~~e~~~v~~~~~~~~~~~~nP~g~VPvL~~--~g~~l 69 (211)
T PRK09481 7 KRSVMTLFSGPTDIYSHQVRIVLAEKGV----SVEIEQVEKDNLPQDLIDLNPYQSVPTLVD--RELTL 69 (211)
T ss_pred CCCeeEEeCCCCChhHHHHHHHHHHCCC----CCEEEeCCcccCCHHHHHhCCCCCCCEEEE--CCEEe
Confidence 4455777888899999998866654321 355566665443 34444445678999863 56543
No 295
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=74.29 E-value=27 Score=27.57 Aligned_cols=97 Identities=19% Similarity=0.220 Sum_probs=58.6
Q ss_pred cccCChhhHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC---CeEEEEEeCCCchhHHHhCC--CCCCcEE
Q 030928 62 AKKQTFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKD---KIQVVKIDTEKYPQIADTYR--IEALPTF 136 (169)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~---~v~~~~v~~d~~~~l~~~~~--v~~~Pt~ 136 (169)
+.+++.++.+++.+ .|.|.+|+|+.+.--...+ ..-..+++++.+ .+.++..|++.-.--...+| -...|.+
T Consensus 212 VREiTFeN~EELtE-EGlPflILf~~kdD~~s~k--~F~~aI~ReL~~e~~~in~l~ADG~~f~hpL~HlgKs~~DLPvi 288 (375)
T KOG0912|consen 212 VREITFENAEELTE-EGLPFLILFRKKDDKESEK--IFKNAIARELDDETLAINFLTADGKVFKHPLRHLGKSPDDLPVI 288 (375)
T ss_pred hhhhhhccHHHHhh-cCCceEEEEecCCcccHHH--HHHHHHHHHhhhhhhccceeecCcceecchHHHhCCCcccCcEE
Confidence 45677777777764 5889999999887655432 233445555543 27888888776554444444 3355655
Q ss_pred EE--------EcCCceeeeeeCCCCHHHHHHHHHhhhcc
Q 030928 137 IL--------FKDGKPSDRFEGAFSKDQLIQRIENSLSV 167 (169)
Q Consensus 137 ~~--------~~~g~~~~~~~G~~~~~~l~~~i~~~l~~ 167 (169)
.+ |.+++- ...+..+++|+.++-..
T Consensus 289 aIDsF~Hmylfp~f~d------i~~pGkLkqFv~DL~sg 321 (375)
T KOG0912|consen 289 AIDSFRHMYLFPDFND------INIPGKLKQFVADLHSG 321 (375)
T ss_pred EeeccceeeecCchhh------hcCccHHHHHHHHHhCc
Confidence 44 333322 22345788888877544
No 296
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=73.98 E-value=15 Score=26.74 Aligned_cols=56 Identities=11% Similarity=0.147 Sum_probs=29.4
Q ss_pred EEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEcCCce
Q 030928 84 DFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKP 144 (169)
Q Consensus 84 ~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g~~ 144 (169)
+|+...||+|++.+=.+....-. +..+.++.++.....+......+|++.. .+|..
T Consensus 2 Ly~~~~sp~~~kvr~~L~~~gl~----~e~~~~~~~~~~~~~~~np~g~vP~l~~-~~g~~ 57 (209)
T TIGR02182 2 LYIYDHCPFCVRARMIFGLKNIP----VEKHVLLNDDEETPIRMIGAKQVPILQK-DDGRA 57 (209)
T ss_pred eecCCCCChHHHHHHHHHHcCCC----eEEEECCCCcchhHHHhcCCCCcceEEe-eCCeE
Confidence 35667899998877555332222 2333333333333333334578898754 35544
No 297
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=73.40 E-value=23 Score=27.51 Aligned_cols=73 Identities=16% Similarity=0.261 Sum_probs=42.8
Q ss_pred cEEEEEEcCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCCchhHHHhCCCCCCcEEEEEcCCceeeeeeCCCCHHHHH
Q 030928 80 PVLVDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSDRFEGAFSKDQLI 158 (169)
Q Consensus 80 ~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~ 158 (169)
.-+++|--..||.|-+++..| .|.+ ...++.||--...++--- ..+.+|-+++ +|+. ..+-.-|+
T Consensus 89 L~l~LyQyetCPFCcKVrAFL-----DyhgisY~VVEVnpV~r~eIk~S-sykKVPil~~--~Geq------m~dSsvII 154 (370)
T KOG3029|consen 89 LDLVLYQYETCPFCCKVRAFL-----DYHGISYAVVEVNPVLRQEIKWS-SYKKVPILLI--RGEQ------MVDSSVII 154 (370)
T ss_pred ceEEEEeeccCchHHHHHHHH-----hhcCCceEEEEecchhhhhcccc-ccccccEEEe--ccce------echhHHHH
Confidence 467777788999999988776 5554 234445553333333221 4678887766 4662 33444555
Q ss_pred HHHHhhhc
Q 030928 159 QRIENSLS 166 (169)
Q Consensus 159 ~~i~~~l~ 166 (169)
..|..+|+
T Consensus 155 s~laTyLq 162 (370)
T KOG3029|consen 155 SLLATYLQ 162 (370)
T ss_pred HHHHHHhc
Confidence 55555543
No 298
>COG3411 Ferredoxin [Energy production and conversion]
Probab=73.28 E-value=10 Score=22.34 Aligned_cols=30 Identities=10% Similarity=0.308 Sum_probs=25.7
Q ss_pred CcEEEEEcCCceeeeeeCCCCHHHHHHHHHhhhc
Q 030928 133 LPTFILFKDGKPSDRFEGAFSKDQLIQRIENSLS 166 (169)
Q Consensus 133 ~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~~~l~ 166 (169)
=|++++|.+| .+.+..+.+..++.+++++.
T Consensus 17 gPvl~vYpeg----vWY~~V~p~~a~rIv~~hl~ 46 (64)
T COG3411 17 GPVLVVYPEG----VWYTRVDPEDARRIVQSHLL 46 (64)
T ss_pred CCEEEEecCC----eeEeccCHHHHHHHHHHHHh
Confidence 4899999888 56778899999999999886
No 299
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=72.85 E-value=21 Score=22.58 Aligned_cols=55 Identities=13% Similarity=0.019 Sum_probs=29.9
Q ss_pred CChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCCchhHHHhC--------CCCCCcEEEEEcCCcee
Q 030928 89 WCGPCQYMAPILNEVGAALKD-KIQVVKIDTEKYPQIADTY--------RIEALPTFILFKDGKPS 145 (169)
Q Consensus 89 ~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~d~~~~l~~~~--------~v~~~Pt~~~~~~g~~~ 145 (169)
.+..-+.....=+++...+.. ++.|-.+|++.+++..+++ +-..+|-+++ +|+.+
T Consensus 8 s~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi--~~~~i 71 (92)
T cd03030 8 SSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFN--GDEYC 71 (92)
T ss_pred cccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEE--CCEEe
Confidence 343344444433333333332 4889899988766544332 3457787766 66543
No 300
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=72.00 E-value=17 Score=21.18 Aligned_cols=46 Identities=15% Similarity=0.127 Sum_probs=26.0
Q ss_pred CCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEcCCcee
Q 030928 88 TWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPS 145 (169)
Q Consensus 88 ~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g~~~ 145 (169)
++|+.|++.+-.+.. .+ +.|-.++++... .-.-..+|++.. +|+.+
T Consensus 14 s~sp~~~~v~~~L~~-----~~-i~~~~~~~~~~~----~~p~g~vP~l~~--~g~~l 59 (72)
T cd03054 14 SLSPECLKVETYLRM-----AG-IPYEVVFSSNPW----RSPTGKLPFLEL--NGEKI 59 (72)
T ss_pred CCCHHHHHHHHHHHh-----CC-CceEEEecCCcc----cCCCcccCEEEE--CCEEE
Confidence 589999998866644 22 444444443321 112347898765 56543
No 301
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=71.74 E-value=42 Score=25.54 Aligned_cols=40 Identities=15% Similarity=0.115 Sum_probs=27.8
Q ss_pred hHHHhCCCCCCc--EEEEE-cCCceeeeeeCCCCHHHHHHHHH
Q 030928 123 QIADTYRIEALP--TFILF-KDGKPSDRFEGAFSKDQLIQRIE 162 (169)
Q Consensus 123 ~l~~~~~v~~~P--t~~~~-~~g~~~~~~~G~~~~~~l~~~i~ 162 (169)
++-+.+|+.-.- -++++ .+|++.+.-.|..+.++++....
T Consensus 205 ~iRe~Lgi~N~~~GYvyLVD~~grIRWagsG~At~~E~~~L~k 247 (252)
T PF05176_consen 205 DIREALGINNSYVGYVYLVDPNGRIRWAGSGPATPEELESLWK 247 (252)
T ss_pred HHHHHhCCCCCCcCeEEEECCCCeEEeCccCCCCHHHHHHHHH
Confidence 344556655333 35555 49999999899999999887764
No 302
>PRK10387 glutaredoxin 2; Provisional
Probab=71.73 E-value=19 Score=25.78 Aligned_cols=56 Identities=11% Similarity=0.175 Sum_probs=30.7
Q ss_pred EEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEcCCce
Q 030928 84 DFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKP 144 (169)
Q Consensus 84 ~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g~~ 144 (169)
+++.+.|++|.+++=.+++..- .+....++..+.....+..+...+|+++. ++|..
T Consensus 3 Ly~~~~sp~~~kv~~~L~~~gi----~y~~~~~~~~~~~~~~~~~p~~~VPvL~~-~~g~~ 58 (210)
T PRK10387 3 LYIYDHCPFCVKARMIFGLKNI----PVELIVLANDDEATPIRMIGQKQVPILQK-DDGSY 58 (210)
T ss_pred EEeCCCCchHHHHHHHHHHcCC----CeEEEEcCCCchhhHHHhcCCcccceEEe-cCCeE
Confidence 4567789999987755543322 23444444433322223334567899754 35544
No 303
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=70.39 E-value=38 Score=25.13 Aligned_cols=66 Identities=20% Similarity=0.199 Sum_probs=42.0
Q ss_pred CChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhC-CCCCCcEEEEEcCCceeeeeeCCCCHHHHHHHHHhhhc
Q 030928 89 WCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTY-RIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENSLS 166 (169)
Q Consensus 89 ~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~-~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~~~l~ 166 (169)
.|+.|+++.-.|. .+.. .+.+-.||....++..+.. .-...|-+.+ +|+. ..+.+.++++|++-+.
T Consensus 20 dcpf~qr~~m~L~---~k~~-~f~vttVd~~~kp~~f~~~sp~~~~P~l~~--d~~~------~tDs~~Ie~~Lee~l~ 86 (221)
T KOG1422|consen 20 DCPFCQRLFMTLE---LKGV-PFKVTTVDLSRKPEWFLDISPGGKPPVLKF--DEKW------VTDSDKIEEFLEEKLP 86 (221)
T ss_pred CChhHHHHHHHHH---HcCC-CceEEEeecCCCcHHHHhhCCCCCCCeEEe--CCce------eccHHHHHHHHHHhcC
Confidence 5888888776665 2211 4667788888777666554 4555666555 4432 3357778888877664
No 304
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=69.54 E-value=43 Score=25.51 Aligned_cols=89 Identities=19% Similarity=0.270 Sum_probs=55.4
Q ss_pred HHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCC---chhHHHhCCCCCCcEEEEEcCCceeee
Q 030928 71 DDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEK---YPQIADTYRIEALPTFILFKDGKPSDR 147 (169)
Q Consensus 71 ~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~---~~~l~~~~~v~~~Pt~~~~~~g~~~~~ 147 (169)
..++....-.-++++.+..|+-.-.++..+.+++.+ .+.++.|+-+. -+++...+.-...+-|+|+++ +..
T Consensus 44 ~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~---GLRlIev~k~~L~~l~~l~~~l~~~~~kFIlf~DD---LsF 117 (249)
T PF05673_consen 44 EQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ---GLRLIEVSKEDLGDLPELLDLLRDRPYKFILFCDD---LSF 117 (249)
T ss_pred HHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc---CceEEEECHHHhccHHHHHHHHhcCCCCEEEEecC---CCC
Confidence 344433333456668899999988888777777765 48888886544 356666666566666777665 222
Q ss_pred eeCCCCHHHHHHHHHhhh
Q 030928 148 FEGAFSKDQLIQRIENSL 165 (169)
Q Consensus 148 ~~G~~~~~~l~~~i~~~l 165 (169)
-.+......++..|+-.+
T Consensus 118 e~~d~~yk~LKs~LeGgl 135 (249)
T PF05673_consen 118 EEGDTEYKALKSVLEGGL 135 (249)
T ss_pred CCCcHHHHHHHHHhcCcc
Confidence 234445556666665444
No 305
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=68.73 E-value=5.2 Score=26.22 Aligned_cols=20 Identities=15% Similarity=0.310 Sum_probs=16.1
Q ss_pred EEEEcCCChhhhhhhHHHHH
Q 030928 83 VDFYATWCGPCQYMAPILNE 102 (169)
Q Consensus 83 v~f~~~~C~~C~~~~~~l~~ 102 (169)
..|+.+.|..|++....|++
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~ 21 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEE 21 (112)
T ss_pred EEEECCCCHHHHHHHHHHHH
Confidence 46889999999998866643
No 306
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=68.20 E-value=5.4 Score=26.26 Aligned_cols=32 Identities=13% Similarity=0.182 Sum_probs=22.3
Q ss_pred EEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCC
Q 030928 83 VDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEK 120 (169)
Q Consensus 83 v~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~ 120 (169)
..|+.+.|..|++....|++- ++.|-.+|.-+
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~------~i~~~~~di~~ 33 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK------GIEPEVVKYLK 33 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC------CCCeEEEeccC
Confidence 468899999999988777552 24444555443
No 307
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=67.61 E-value=6.9 Score=26.04 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=18.0
Q ss_pred EEEEEcCCChhhhhhhHHHHHH
Q 030928 82 LVDFYATWCGPCQYMAPILNEV 103 (169)
Q Consensus 82 vv~f~~~~C~~C~~~~~~l~~~ 103 (169)
+..|+.|.|..|+..+..|++.
T Consensus 3 itiy~~p~C~t~rka~~~L~~~ 24 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEH 24 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHc
Confidence 5678999999999998777543
No 308
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=64.66 E-value=20 Score=21.64 Aligned_cols=67 Identities=13% Similarity=0.177 Sum_probs=36.1
Q ss_pred cCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHh---CCCCCCcEEEEEcCCceeeeeeCCCCHHHHHHHHHh
Q 030928 87 ATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADT---YRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIEN 163 (169)
Q Consensus 87 ~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~---~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~~ 163 (169)
.+||++|++.+-.+.+..- ...+..++..+.+..... -....+|++.. .+|+.+. +-..|.++|++
T Consensus 13 ~~~Sp~~~kv~~~L~~~~i----~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~-~~~~~l~------eS~aI~~yL~~ 81 (84)
T cd03038 13 RAFSPNVWKTRLALNHKGL----EYKTVPVEFPDIPPILGELTSGGFYTVPVIVD-GSGEVIG------DSFAIAEYLEE 81 (84)
T ss_pred CCcCChhHHHHHHHHhCCC----CCeEEEecCCCcccccccccCCCCceeCeEEE-CCCCEEe------CHHHHHHHHHH
Confidence 3689999988766644322 244445554433222222 23467898743 2265432 45667777665
Q ss_pred h
Q 030928 164 S 164 (169)
Q Consensus 164 ~ 164 (169)
.
T Consensus 82 ~ 82 (84)
T cd03038 82 A 82 (84)
T ss_pred h
Confidence 3
No 309
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=63.21 E-value=78 Score=25.48 Aligned_cols=91 Identities=23% Similarity=0.289 Sum_probs=59.0
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC--CeEEEEEeCCCchhHH----HhCCCC-CCcEEEEEc--CCceeee-
Q 030928 78 DKPVLVDFYATWCGPCQYMAPILNEVGAALKD--KIQVVKIDTEKYPQIA----DTYRIE-ALPTFILFK--DGKPSDR- 147 (169)
Q Consensus 78 ~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~--~v~~~~v~~d~~~~l~----~~~~v~-~~Pt~~~~~--~g~~~~~- 147 (169)
+...+|-|--..-+.-..+...+.++++...+ .+.++-||-|+-+-+. +.|+|. .-|.+-+++ +..-++.
T Consensus 268 ~g~hIvaFaee~dpdG~efleilk~va~~nt~np~LsivwIDPD~fPllv~yWE~tF~Idl~~PqIGvVnvtdadsvW~d 347 (383)
T PF01216_consen 268 DGIHIVAFAEEEDPDGFEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVPYWEKTFGIDLSRPQIGVVNVTDADSVWMD 347 (383)
T ss_dssp SSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT-TT--EEEE-GGG-HHHHHHHHHHHTT-TTS-EEEEEETTTSEEEEC-
T ss_pred CCceEEEEecCCCCchHHHHHHHHHHHHhcCcCCceeEEEECCCCCchhHHHHHhhcCccccCCceeEEeccccccchhc
Confidence 55677888888899999999999999998765 4899999999877544 346655 239988884 3332321
Q ss_pred e---eCCCCHHHHHHHHHhhhccC
Q 030928 148 F---EGAFSKDQLIQRIENSLSVK 168 (169)
Q Consensus 148 ~---~G~~~~~~l~~~i~~~l~~~ 168 (169)
. ...++.++++.||+..|..+
T Consensus 348 m~d~~d~pt~~~LedWieDVlsg~ 371 (383)
T PF01216_consen 348 MDDDDDLPTAEELEDWIEDVLSGK 371 (383)
T ss_dssp STTTSS---HHHHHHHHHHHHCTC
T ss_pred cCCcccCCcHHHHHHHHHHHhcCC
Confidence 1 23458899999999999764
No 310
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=63.12 E-value=16 Score=25.75 Aligned_cols=33 Identities=9% Similarity=-0.016 Sum_probs=26.3
Q ss_pred EEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEE
Q 030928 84 DFYATWCGPCQYMAPILNEVGAALKDKIQVVKI 116 (169)
Q Consensus 84 ~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v 116 (169)
+|+..-||.|-...+.++++..+++-.+.+..+
T Consensus 3 ~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~p~ 35 (192)
T cd03022 3 FYFDFSSPYSYLAHERLPALAARHGATVRYRPI 35 (192)
T ss_pred EEEeCCChHHHHHHHHHHHHHHHhCCeeEEeee
Confidence 577889999999999999999888644555444
No 311
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=62.67 E-value=9.9 Score=30.16 Aligned_cols=68 Identities=25% Similarity=0.306 Sum_probs=35.0
Q ss_pred cEEEEEEcCCChhhh-hhhHHHHHHHHHhc---CCeEEEEEeCCCc-hhHH--HhCCCCCC--cEEEEEcCCceeeeee
Q 030928 80 PVLVDFYATWCGPCQ-YMAPILNEVGAALK---DKIQVVKIDTEKY-PQIA--DTYRIEAL--PTFILFKDGKPSDRFE 149 (169)
Q Consensus 80 ~vvv~f~~~~C~~C~-~~~~~l~~~~~~~~---~~v~~~~v~~d~~-~~l~--~~~~v~~~--Pt~~~~~~g~~~~~~~ 149 (169)
+-+| -.|.|+.|. .+.+..+++.+.+. ..+++...-|..| +.-+ ..+||-+- -..++|++|+++....
T Consensus 257 ~~ii--SCPtCGR~~~dl~~~~~~ve~~l~~~~~~l~VAVMGCvVNGPGEak~ADiGIaggg~g~~~lF~~G~~~~kv~ 333 (346)
T TIGR00612 257 VEIV--ACPSCGRTGFDVEKVVRRVQEALFHLKTPLKVAVMGCVVNGPGEAKHADIGISGGGTGSAILFKRGKPKAKQP 333 (346)
T ss_pred CeEE--ECCCCCCcCCCHHHHHHHHHHHHhcCCCCCEEEEECceecCCchhhccCeeeecCCCCceEEEECCEEeEecC
Confidence 4444 345555553 22233333333333 3366665555443 2222 35676644 3477889999876544
No 312
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=62.60 E-value=18 Score=25.27 Aligned_cols=41 Identities=24% Similarity=0.231 Sum_probs=30.7
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCC
Q 030928 78 DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTE 119 (169)
Q Consensus 78 ~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d 119 (169)
++.++..|=+=.-+.|......+.+.+.++.+ +.++.|..|
T Consensus 45 k~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~-~~Vl~IS~D 85 (158)
T COG2077 45 KKKVISVFPSIDTPVCATQVRKFNEEAAKLGN-TVVLCISMD 85 (158)
T ss_pred ceEEEEEccCCCCchhhHHHHHHHHHHhccCC-cEEEEEeCC
Confidence 34555566677889999999999999999887 556656544
No 313
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=61.86 E-value=12 Score=25.29 Aligned_cols=23 Identities=9% Similarity=0.128 Sum_probs=18.2
Q ss_pred EEEEEEcCCChhhhhhhHHHHHH
Q 030928 81 VLVDFYATWCGPCQYMAPILNEV 103 (169)
Q Consensus 81 vvv~f~~~~C~~C~~~~~~l~~~ 103 (169)
.+.+|+-+.|..|++.+..|++-
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~ 24 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKAS 24 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHC
Confidence 35678899999999998777543
No 314
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=61.64 E-value=30 Score=20.11 Aligned_cols=60 Identities=17% Similarity=0.286 Sum_probs=33.7
Q ss_pred EEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCC-chhHHHhCCCCCCcEEEEEcCCcee
Q 030928 83 VDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEK-YPQIADTYRIEALPTFILFKDGKPS 145 (169)
Q Consensus 83 v~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~-~~~l~~~~~v~~~Pt~~~~~~g~~~ 145 (169)
.+|+.+.|++|.+.+-.+.... .+-.+..+.+|... .+++.+......+|.+.. .+|..+
T Consensus 2 ~Ly~~~~s~~~~~~~~~l~~~~--~~i~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~-~~g~~l 62 (73)
T cd03049 2 KLLYSPTSPYVRKVRVAAHETG--LGDDVELVLVNPWSDDESLLAVNPLGKIPALVL-DDGEAL 62 (73)
T ss_pred EEecCCCCcHHHHHHHHHHHhC--CCCCcEEEEcCcccCChHHHHhCCCCCCCEEEE-CCCCEE
Confidence 3577889999998775554311 11124445555322 334445555778898654 355443
No 315
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=61.35 E-value=22 Score=23.80 Aligned_cols=53 Identities=21% Similarity=0.387 Sum_probs=36.6
Q ss_pred CCChhhhhhhHHHHHHHHH----hcC---CeEEEEEeCCCchhHHHhCCCCCCcEEEEEcCCcee
Q 030928 88 TWCGPCQYMAPILNEVGAA----LKD---KIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPS 145 (169)
Q Consensus 88 ~~C~~C~~~~~~l~~~~~~----~~~---~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g~~~ 145 (169)
..|..|...-..+.+..++ +.. .+.+-.+..+. .+++.++ -.-|++.+ ||+.+
T Consensus 13 ~tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~-~~~~~~~--~~S~~I~i--nG~pi 72 (120)
T PF10865_consen 13 KTCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDE-EEFARQP--LESPTIRI--NGRPI 72 (120)
T ss_pred CcCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECCh-HHHhhcc--cCCCeeeE--CCEeh
Confidence 4899998877766665554 332 36666777766 4677777 67788888 88765
No 316
>PRK10853 putative reductase; Provisional
Probab=60.44 E-value=10 Score=25.19 Aligned_cols=21 Identities=10% Similarity=0.090 Sum_probs=17.3
Q ss_pred EEEEEcCCChhhhhhhHHHHH
Q 030928 82 LVDFYATWCGPCQYMAPILNE 102 (169)
Q Consensus 82 vv~f~~~~C~~C~~~~~~l~~ 102 (169)
+..|+-+.|..|++....|++
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~ 22 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEA 22 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHH
Confidence 457889999999999877754
No 317
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=59.62 E-value=54 Score=24.06 Aligned_cols=37 Identities=14% Similarity=0.130 Sum_probs=26.1
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeC
Q 030928 78 DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDT 118 (169)
Q Consensus 78 ~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~ 118 (169)
..-.+.+|....|+.|......+.. -...+.++.|+.
T Consensus 108 ~~~rlalFvkd~C~~C~~~~~~l~a----~~~~~Diylvgs 144 (200)
T TIGR03759 108 GGGRLALFVKDDCVACDARVQRLLA----DNAPLDLYLVGS 144 (200)
T ss_pred CCCeEEEEeCCCChHHHHHHHHHhc----CCCceeEEEecC
Confidence 3456777888999999988776622 122488888883
No 318
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=59.49 E-value=38 Score=24.48 Aligned_cols=49 Identities=12% Similarity=0.268 Sum_probs=36.8
Q ss_pred hHHHHHhcCCCcEEEEEE--cCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCC
Q 030928 69 SLDDLLQKSDKPVLVDFY--ATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEK 120 (169)
Q Consensus 69 ~~~~~~~~~~~~vvv~f~--~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~d~ 120 (169)
.|.+++ +.-+.|+|. ++--|.|......+.+++.++.. +++.+...||.
T Consensus 25 ~fhd~~---gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d~ 76 (224)
T KOG0854|consen 25 KFHDYL---GDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVDD 76 (224)
T ss_pred ehhhhc---ccceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehhh
Confidence 466665 556778887 55688999998888888888875 48888877654
No 319
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=59.00 E-value=27 Score=23.18 Aligned_cols=34 Identities=24% Similarity=0.320 Sum_probs=22.1
Q ss_pred HHhCCCCCCcEEEEEcCCceeeeeeCCCCHHHHHHHHH
Q 030928 125 ADTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIE 162 (169)
Q Consensus 125 ~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~ 162 (169)
+..|||+.+|.++| |++- ...|..+...-...++
T Consensus 76 Aw~lgi~k~PAVVf--D~~~--VVYG~tDV~~A~~~~~ 109 (114)
T PF07511_consen 76 AWSLGITKYPAVVF--DDRY--VVYGETDVARALARIE 109 (114)
T ss_pred HHHhCccccCEEEE--cCCe--EEecccHHHHHHHHHH
Confidence 45799999999888 4443 2356666554444443
No 320
>PF12617 LdpA_C: Iron-Sulfur binding protein C terminal; InterPro: IPR021039 This entry represents the C-terminal region of the iron-sulphur protein LdpA (Light dependent period), which is found in phototropic organisms. LdpA was originally identified in cyanobacteria where it is involved in light-dependent modulation of the circadian clock. The presence of iron-sulphur clusters on LdpA suggests that it may modulate the circadian clock as an indirect function of light intensity by sensing changes in cellular physiology [].
Probab=58.23 E-value=37 Score=24.53 Aligned_cols=74 Identities=15% Similarity=0.312 Sum_probs=47.6
Q ss_pred hhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHH----hCC-CCCCcEEEEEc-CCceeeeeeCCCCHHHHHHHHHhhh
Q 030928 92 PCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIAD----TYR-IEALPTFILFK-DGKPSDRFEGAFSKDQLIQRIENSL 165 (169)
Q Consensus 92 ~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~----~~~-v~~~Pt~~~~~-~g~~~~~~~G~~~~~~l~~~i~~~l 165 (169)
.-..+...|+.++.-.. .++.+.|.|.+.+.+.+ .|. +...|...+.. ||+.+.-..|..+...-.++.++++
T Consensus 19 r~~~F~~lw~~l~~~~~-~Lk~lAiSc~~~~~li~~L~~~~~~l~~l~~~~iWQ~DGRPMSGDIG~GTt~aaV~l~~~v~ 97 (183)
T PF12617_consen 19 RLAAFERLWQALAPSVP-QLKLLAISCPDGEGLIDYLWQLYEILRPLPCPLIWQLDGRPMSGDIGDGTTRAAVKLAQKVL 97 (183)
T ss_pred ccHHHHHHHHHHHhhhh-hccEEEEECCCCHHHHHHHHHHHHHHhccCCCeeEeeCCcccCCCCCCcHHHHHHHHHHHHh
Confidence 33456666777666655 48888898887765544 344 33456656665 8988776677766666666666655
Q ss_pred c
Q 030928 166 S 166 (169)
Q Consensus 166 ~ 166 (169)
.
T Consensus 98 ~ 98 (183)
T PF12617_consen 98 S 98 (183)
T ss_pred h
Confidence 3
No 321
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=58.13 E-value=19 Score=30.68 Aligned_cols=73 Identities=18% Similarity=0.368 Sum_probs=50.7
Q ss_pred ChhhHHHHHhcCCCcEEEEEEcCCChhhhhhhHH-H--HHHHHHhcCCeEEEEEeCCCchhHHH--------hCCCCCCc
Q 030928 66 TFSSLDDLLQKSDKPVLVDFYATWCGPCQYMAPI-L--NEVGAALKDKIQVVKIDTEKYPQIAD--------TYRIEALP 134 (169)
Q Consensus 66 ~~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~-l--~~~~~~~~~~v~~~~v~~d~~~~l~~--------~~~v~~~P 134 (169)
..+.|++.- ..++|+++-..-..|-.|..|..+ | ++.++...++++-+.||.++.+++=+ -+|-.|+|
T Consensus 101 gqeaf~kar-~enkpifLsvgystchwchvmekesfeneet~~ilnenfv~ikVDREERPDVDK~YM~Fv~assg~GGWP 179 (786)
T KOG2244|consen 101 GQEAFNKAR-AENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNENFVKIKVDREERPDVDKLYMAFVVASSGGGGWP 179 (786)
T ss_pred hHHHHHHHH-hcCCCEEEEcccccchheeeeecccccCHHHHHHHhhhhhhhccChhhcCchHHHHHHHHHhccCCCCCc
Confidence 445677664 457899999999999999887652 3 44666665556666777777665543 35777888
Q ss_pred EEEEE
Q 030928 135 TFILF 139 (169)
Q Consensus 135 t~~~~ 139 (169)
.-++.
T Consensus 180 msV~L 184 (786)
T KOG2244|consen 180 MSVFL 184 (786)
T ss_pred eeEEe
Confidence 76655
No 322
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=57.29 E-value=37 Score=19.88 Aligned_cols=57 Identities=14% Similarity=0.162 Sum_probs=34.7
Q ss_pred EEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCC----chhHHHhCCCCCCcEEEEEcCCcee
Q 030928 83 VDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEK----YPQIADTYRIEALPTFILFKDGKPS 145 (169)
Q Consensus 83 v~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~----~~~l~~~~~v~~~Pt~~~~~~g~~~ 145 (169)
.+|+.+.++.|+...-.+++..- .+....++..+ .+++.+......+|++.. +|..+
T Consensus 2 ~ly~~~~s~~~~~v~~~l~~~g~----~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~--~~~~l 62 (76)
T cd03050 2 KLYYDLMSQPSRAVYIFLKLNKI----PFEECPIDLRKGEQLTPEFKKINPFGKVPAIVD--GDFTL 62 (76)
T ss_pred EEeeCCCChhHHHHHHHHHHcCC----CcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEE--CCEEE
Confidence 35777889999887655544332 24455565432 234555556778998863 56543
No 323
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=57.13 E-value=34 Score=22.70 Aligned_cols=33 Identities=15% Similarity=0.215 Sum_probs=22.1
Q ss_pred HHhCCCCCCcEEEEEcCCceeeeeeCCCCHHHHHHHH
Q 030928 125 ADTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRI 161 (169)
Q Consensus 125 ~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i 161 (169)
+..|||+.+|.++| |++- ...|..+...=...+
T Consensus 77 Aw~lGi~k~PAVV~--D~~~--VVYG~~DV~~A~~~~ 109 (113)
T TIGR03757 77 AWQLGVTKIPAVVV--DRRY--VVYGETDVARALALI 109 (113)
T ss_pred HHHcCCccCCEEEE--cCCe--EEecCccHHHHHHHH
Confidence 45799999999888 4542 345776665544444
No 324
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=56.86 E-value=38 Score=19.87 Aligned_cols=57 Identities=14% Similarity=0.153 Sum_probs=33.9
Q ss_pred EEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCC---chhHHHhCCCCCCcEEEEEcCCcee
Q 030928 84 DFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEK---YPQIADTYRIEALPTFILFKDGKPS 145 (169)
Q Consensus 84 ~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~---~~~l~~~~~v~~~Pt~~~~~~g~~~ 145 (169)
+|+.+.|+.|.+.+-.+++.. -.+.+..++... .+++.+..-...+|++.. .+|..+
T Consensus 3 Ly~~~~~~~~~~~~~~l~~~g----i~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~-~~g~~l 62 (75)
T cd03044 3 LYTYPGNPRSLKILAAAKYNG----LDVEIVDFQPGKENKTPEFLKKFPLGKVPAFEG-ADGFCL 62 (75)
T ss_pred EecCCCCccHHHHHHHHHHcC----CceEEEecccccccCCHHHHHhCCCCCCCEEEc-CCCCEE
Confidence 467778898887765555331 135555666542 344444455778999865 246544
No 325
>PRK10026 arsenate reductase; Provisional
Probab=56.86 E-value=14 Score=25.44 Aligned_cols=22 Identities=9% Similarity=0.300 Sum_probs=17.8
Q ss_pred EEEEEcCCChhhhhhhHHHHHH
Q 030928 82 LVDFYATWCGPCQYMAPILNEV 103 (169)
Q Consensus 82 vv~f~~~~C~~C~~~~~~l~~~ 103 (169)
+..|+-+.|..|+.....|++-
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~ 25 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNS 25 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC
Confidence 5678899999999998777543
No 326
>cd03062 TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) family, Sucrase subfamily; composed of proteins with similarity to a novel plant enzyme, isolated from potato, which contains a Fd-like domain and exhibits sucrolytic activity. The putative active site of the Fd-like domain of the enzyme contains two cysteines and two histidines for possible binding to iron-sulfur clusters, compared to four cysteines present in the active site of Fd.
Probab=53.86 E-value=29 Score=22.07 Aligned_cols=65 Identities=18% Similarity=0.384 Sum_probs=41.2
Q ss_pred CCChhhhhhhHHHHHHHHHhcC----CeEEEEEeCCCchhHHHhCCCC-CCcEEEEEc--CCceeeeeeCCCCHHHHHHH
Q 030928 88 TWCGPCQYMAPILNEVGAALKD----KIQVVKIDTEKYPQIADTYRIE-ALPTFILFK--DGKPSDRFEGAFSKDQLIQR 160 (169)
Q Consensus 88 ~~C~~C~~~~~~l~~~~~~~~~----~v~~~~v~~d~~~~l~~~~~v~-~~Pt~~~~~--~g~~~~~~~G~~~~~~l~~~ 160 (169)
.-|..+- .+.++++.+++.+ .+.+..+.+ +|.- .=|++++|. +| .+.|..+++++...
T Consensus 14 ~~C~~~g--~~l~~~l~~~l~~~~~~~v~v~~~~c---------lG~c~~gp~vvvyP~~~g----~wy~~v~p~~v~~I 78 (97)
T cd03062 14 KRCGICG--PPLAAELRAELPEHGPGGVRVWEVSH---------VGGHKFAGNVIIYPKGDG----IWYGRVTPEHVPPI 78 (97)
T ss_pred cChhhcC--HHHHHHHHHHHHHhCCCceEEEeCCc---------CCccCcCCEEEEEeCCCe----eEEeecCHHHHHHH
Confidence 3465543 3456666665542 244443332 3322 348999998 65 46788899999999
Q ss_pred HHhhhcc
Q 030928 161 IENSLSV 167 (169)
Q Consensus 161 i~~~l~~ 167 (169)
|++++..
T Consensus 79 v~~hl~~ 85 (97)
T cd03062 79 VDRLILG 85 (97)
T ss_pred HHHHhcC
Confidence 9988854
No 327
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=52.43 E-value=24 Score=21.82 Aligned_cols=32 Identities=31% Similarity=0.451 Sum_probs=25.4
Q ss_pred CcEEEEEcCCceeeeeeCCCCHHHHHHHHHhhhc
Q 030928 133 LPTFILFKDGKPSDRFEGAFSKDQLIQRIENSLS 166 (169)
Q Consensus 133 ~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~~~l~ 166 (169)
-.++.+|..|+++ ..|..+.+++++.++++++
T Consensus 49 ~~t~~IF~sGki~--itGaks~~~~~~a~~~i~~ 80 (86)
T PF00352_consen 49 KATVLIFSSGKIV--ITGAKSEEEAKKAIEKILP 80 (86)
T ss_dssp TEEEEEETTSEEE--EEEESSHHHHHHHHHHHHH
T ss_pred cEEEEEEcCCEEE--EEecCCHHHHHHHHHHHHH
Confidence 3578899999975 4688888888888887764
No 328
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=47.73 E-value=79 Score=24.14 Aligned_cols=47 Identities=19% Similarity=0.215 Sum_probs=28.9
Q ss_pred CCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchh-HHHhCCCCCCcEEEE
Q 030928 88 TWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQ-IADTYRIEALPTFIL 138 (169)
Q Consensus 88 ~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~-l~~~~~v~~~Pt~~~ 138 (169)
.+|++|++..-.+++..- .+.+..+|..+.++ +.+.---..+|++..
T Consensus 71 g~cp~s~rV~i~L~ekgi----~ye~~~vdl~~~~~~fl~iNP~GkVPvL~~ 118 (265)
T PLN02817 71 GDCPFCQRVLLTLEEKHL----PYDMKLVDLTNKPEWFLKISPEGKVPVVKL 118 (265)
T ss_pred CCCcHHHHHHHHHHHcCC----CCEEEEeCcCcCCHHHHhhCCCCCCCEEEE
Confidence 469999998876654432 25566677655433 333333568899865
No 329
>PRK15113 glutathione S-transferase; Provisional
Probab=47.46 E-value=1.1e+02 Score=22.17 Aligned_cols=61 Identities=16% Similarity=0.176 Sum_probs=36.6
Q ss_pred CcEEEEEEcC--CChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCc----hhHHHhCCCCCCcEEEEEcCCcee
Q 030928 79 KPVLVDFYAT--WCGPCQYMAPILNEVGAALKDKIQVVKIDTEKY----PQIADTYRIEALPTFILFKDGKPS 145 (169)
Q Consensus 79 ~~vvv~f~~~--~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~----~~l~~~~~v~~~Pt~~~~~~g~~~ 145 (169)
++.+.+|+.+ .|++|++..-.+++..- .+.++.+|.... +++.+..-...+|++.. +|..+
T Consensus 3 ~~~~~Ly~~~~~~s~~~~rv~~~l~e~gi----~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~--~~~~l 69 (214)
T PRK15113 3 KPAITLYSDAHFFSPYVMSAFVALQEKGL----PFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQH--DDFEL 69 (214)
T ss_pred CCeEEEEeCCCCCCchHHHHHHHHHHcCC----CCeEEEeCCCCccccCHHHHhcCCCCCCCEEEE--CCEEE
Confidence 4556777765 69999887755544322 255666765432 34444444678899864 55443
No 330
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=46.81 E-value=61 Score=23.85 Aligned_cols=27 Identities=11% Similarity=0.324 Sum_probs=20.7
Q ss_pred CCCchhHHHhCCCCCCcEEEEEcCCcee
Q 030928 118 TEKYPQIADTYRIEALPTFILFKDGKPS 145 (169)
Q Consensus 118 ~d~~~~l~~~~~v~~~Pt~~~~~~g~~~ 145 (169)
.|.+..+.++|||..+|.++. .+|+.+
T Consensus 171 fdQ~g~Lt~rF~I~~VPavV~-q~g~~l 197 (202)
T TIGR02743 171 FDQHGKLTQKFGIKHVPARVS-QEGLRL 197 (202)
T ss_pred EcCCchHhhccCceeeceEEE-ecCCEE
Confidence 356678999999999999775 566543
No 331
>PLN02333 glucose-6-phosphate 1-dehydrogenase
Probab=46.66 E-value=83 Score=27.25 Aligned_cols=42 Identities=10% Similarity=-0.035 Sum_probs=32.1
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHHH--hcCCeEEEEEeCC
Q 030928 78 DKPVLVDFYATWCGPCQYMAPILNEVGAA--LKDKIQVVKIDTE 119 (169)
Q Consensus 78 ~~~vvv~f~~~~C~~C~~~~~~l~~~~~~--~~~~v~~~~v~~d 119 (169)
+...+|.|.|+.--.=+++.|.|-.+... +++.+.++.+-..
T Consensus 116 ~~~~iVIFGASGDLAkRKL~PALf~L~~~g~Lp~~~~IiG~aRs 159 (604)
T PLN02333 116 STVSITVVGASGDLAKKKIFPALFALYYEGCLPEHFTIFGYARS 159 (604)
T ss_pred CceEEEEecCccHHhHhhHHHHHHHHHHcCCCCCCCEEEEEECC
Confidence 45789999999998889999988888754 3345777777543
No 332
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=45.86 E-value=42 Score=22.21 Aligned_cols=50 Identities=18% Similarity=0.440 Sum_probs=32.1
Q ss_pred ChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCch-hHHHhCC--CCCCcEEEEEc
Q 030928 90 CGPCQYMAPILNEVGAALKDKIQVVKIDTEKYP-QIADTYR--IEALPTFILFK 140 (169)
Q Consensus 90 C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~-~l~~~~~--v~~~Pt~~~~~ 140 (169)
|++|..+.-.|.-+- ...+++.+..|+...-+ ++....| -++.|++++-.
T Consensus 24 Cp~c~~iEGlLa~~P-~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~ 76 (112)
T PF11287_consen 24 CPHCAAIEGLLASFP-DLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLAD 76 (112)
T ss_pred CCchHHHHhHHhhCh-hhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCC
Confidence 889988776653332 22335778888876654 3444444 57999988854
No 333
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=45.36 E-value=72 Score=19.62 Aligned_cols=59 Identities=15% Similarity=0.286 Sum_probs=36.8
Q ss_pred hHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEcCCceeeeeeCCCCHHHHHHHHHhhhccC
Q 030928 97 APILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENSLSVK 168 (169)
Q Consensus 97 ~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~~~l~~~ 168 (169)
...++++. +.++ +.++..+|-.+=+.| ...|-.++ ||+.+. ..+++++.+.|.+.++..
T Consensus 17 ~~~~~~Le-~~p~-~~Vie~gCl~~Cg~C-----~~~pFAlV--nG~~V~----A~t~eeL~~kI~~~i~e~ 75 (78)
T PF07293_consen 17 DQVYEKLE-KDPD-IDVIEYGCLSYCGPC-----AKKPFALV--NGEIVA----AETAEELLEKIKEKIEEN 75 (78)
T ss_pred HHHHHHHh-cCCC-ccEEEcChhhhCcCC-----CCCccEEE--CCEEEe----cCCHHHHHHHHHHHHhcc
Confidence 34455554 3344 777777776665555 23344444 787554 678889998888887653
No 334
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=44.42 E-value=1.3e+02 Score=22.32 Aligned_cols=68 Identities=13% Similarity=0.068 Sum_probs=38.6
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHh-CCCCCCcEEEEEcCCcee
Q 030928 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADT-YRIEALPTFILFKDGKPS 145 (169)
Q Consensus 77 ~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~-~~v~~~Pt~~~~~~g~~~ 145 (169)
.|+..+.+=|+++.+--..|...-.++.++-.| |.++.++....++.... -|+..+|...+..+|...
T Consensus 3 rGrLkIflG~apGVGKTy~ML~ea~~l~~~G~D-VViG~vethgR~et~~l~~gLe~iP~~~i~y~g~~~ 71 (211)
T PF02702_consen 3 RGRLKIFLGAAPGVGKTYAMLQEAHRLKEQGVD-VVIGYVETHGRPETEALLEGLEVIPRKKIEYRGRTL 71 (211)
T ss_dssp ---EEEEEESSTTSSHHHHHHHHHHHHHHTT---EEEEE---TT-HHHHHHHCTS-B---EEEEETTEEE
T ss_pred CccEEEEEecCCCCCHHHHHHHHHHHHHHCCCC-EEEEEecCCCcHHHHHHHcCCCcCCCeeEeeCCEec
Confidence 356666666788888888887777777766444 88888887776665544 468888887766666543
No 335
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=44.04 E-value=22 Score=23.05 Aligned_cols=71 Identities=20% Similarity=0.318 Sum_probs=35.7
Q ss_pred EEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCch-------hHHHhCCCCCCcEEEEEcCCceeeee----eCCCC
Q 030928 85 FYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYP-------QIADTYRIEALPTFILFKDGKPSDRF----EGAFS 153 (169)
Q Consensus 85 f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~-------~l~~~~~v~~~Pt~~~~~~g~~~~~~----~G~~~ 153 (169)
|+-+.|..|+.....|++ . ++.+-.+|..+.+ ++.+.+|.. +.-++-.+|...... ....+
T Consensus 1 Y~~~~C~t~rka~~~L~~-----~-gi~~~~~d~~k~p~s~~el~~~l~~~~~~--~~~lin~~~~~~k~l~~~~~~~~s 72 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEE-----N-GIEYEFIDYKKEPLSREELRELLSKLGNG--PDDLINTRSKTYKELGKLKKDDLS 72 (110)
T ss_dssp EE-TT-HHHHHHHHHHHH-----T-T--EEEEETTTS---HHHHHHHHHHHTSS--GGGGB-TTSHHHHHTTHHHCTTSB
T ss_pred CcCCCCHHHHHHHHHHHH-----c-CCCeEeehhhhCCCCHHHHHHHHHHhccc--HHHHhcCccchHhhhhhhhhhhhh
Confidence 577899999999877754 2 3556667765533 444555532 111222344322111 13556
Q ss_pred HHHHHHHHHh
Q 030928 154 KDQLIQRIEN 163 (169)
Q Consensus 154 ~~~l~~~i~~ 163 (169)
.+++.+.|.+
T Consensus 73 ~~e~i~~l~~ 82 (110)
T PF03960_consen 73 DEELIELLLE 82 (110)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHh
Confidence 6666666654
No 336
>PF10262 Rdx: Rdx family; InterPro: IPR011893 This entry represents the Rdx family of selenoproteins, which includes mammalian selenoproteins SelW, SelV, SelT and SelH, bacterial SelW-like proteins and cysteine-containing proteins of unknown function in all three domains of life. Mammalian Rdx12 and its fish selenoprotein orthologues are also members of this family []. These proteins possess a thioredoxin-like fold and a conserved CXXC or CxxU (U is selenocysteine) motif near the N terminus, suggesting a redox function. Rdx proteins can use catalytic cysteine (or selenocysteine) to form transient mixed disulphides with substrate proteins. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins. Selenoprotein W (SelW) plays an important role in protection of neurons from oxidative stress during neuronal development [], []. Selenoprotein T (SelT) is conserved from plants to humans. SelT is localized to the endoplasmic reticulum through a hydrophobic domain. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding [, ]. The function of SelT is unknown, although it may have a role in PACAP signaling during PC12 cell differentiation [, ]. Selenoprotein H (SelH) protects neurons against UVB-induced damage by inhibiting apoptotic cell death pathways, by preventing mitochondrial depolarization, and by promoting cell survival pathways [].; GO: 0008430 selenium binding, 0045454 cell redox homeostasis; PDB: 2OJL_B 2FA8_A 2P0G_C 2NPB_A 3DEX_C 2OKA_A 2OBK_G.
Probab=43.84 E-value=71 Score=19.14 Aligned_cols=70 Identities=19% Similarity=0.200 Sum_probs=40.6
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEcCCceeeee---eCCCCHHHHH
Q 030928 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSDRF---EGAFSKDQLI 158 (169)
Q Consensus 82 vv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~---~G~~~~~~l~ 158 (169)
|..-|-..|++=.+....-+++...+++++.-+.... + ..-+|-++-||+.++.. .|.++.+++.
T Consensus 3 V~IeYC~~C~~~~~a~~l~~~l~~~fp~~~~~v~~~~----------~--~~G~FEV~v~g~lI~SK~~~g~fP~~~~i~ 70 (76)
T PF10262_consen 3 VTIEYCTSCGYRPRALELAQELLQTFPDRIAEVELSP----------G--STGAFEVTVNGELIFSKLESGRFPDPDEIV 70 (76)
T ss_dssp EEEEEETTTTCHHHHHHHHHHHHHHSTTTCSEEEEEE----------E--STT-EEEEETTEEEEEHHHHTSSS-HHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcceEEEEEe----------c--cCCEEEEEEccEEEEEehhcCCCCCHHHHH
Confidence 3444555666656666666778888887432122210 1 11235666678877643 2677889999
Q ss_pred HHHHh
Q 030928 159 QRIEN 163 (169)
Q Consensus 159 ~~i~~ 163 (169)
+.|++
T Consensus 71 ~~I~~ 75 (76)
T PF10262_consen 71 QLIRD 75 (76)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 88875
No 337
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=43.33 E-value=19 Score=26.11 Aligned_cols=60 Identities=25% Similarity=0.421 Sum_probs=33.4
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCCc-hhHHHhC----CCCCCcEEEEEcCCceee
Q 030928 78 DKPVLVDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEKY-PQIADTY----RIEALPTFILFKDGKPSD 146 (169)
Q Consensus 78 ~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~d~~-~~l~~~~----~v~~~Pt~~~~~~g~~~~ 146 (169)
.|+++.-+|.+.|..=.+.. -.+++ ...+..||.-.. .....+| -...+|++++ +|..+.
T Consensus 4 ~KpiLYSYWrSSCswRVRiA-------LaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i--~g~tl~ 69 (217)
T KOG0868|consen 4 AKPILYSYWRSSCSWRVRIA-------LALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVI--DGLTLT 69 (217)
T ss_pred ccchhhhhhcccchHHHHHH-------HHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEE--CCEEee
Confidence 47888888888887644332 22222 244555554322 2222222 3568999888 776553
No 338
>COG2326 Uncharacterized conserved protein [Function unknown]
Probab=43.12 E-value=1.5e+02 Score=22.78 Aligned_cols=92 Identities=15% Similarity=0.251 Sum_probs=56.8
Q ss_pred HHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCCchhHHHhC---CCCCCcE---EEEEc--
Q 030928 70 LDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEKYPQIADTY---RIEALPT---FILFK-- 140 (169)
Q Consensus 70 ~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~d~~~~l~~~~---~v~~~Pt---~~~~~-- 140 (169)
++..+...+..+|+.|-+..-.. --..+..+.+.++. .+.++.+-....++..+.| -+..+|+ +++|+
T Consensus 64 lq~~~~~~~~~vvivfEGrDAAG---KgG~Ikri~~~lNPR~~rvval~aPt~~E~~qwY~qRy~~~lPa~GeiviFdRS 140 (270)
T COG2326 64 LQRWVAETGQRVVIVFEGRDAAG---KGGAIKRITEALNPRGARVVALPAPTDRERGQWYFQRYVAHLPAAGEIVIFDRS 140 (270)
T ss_pred HHHHHHhcCCeEEEEEecccccC---CCchhHHHhhhcCCceeEEeecCCCChHhhccHHHHHHHHhCCCCCeEEEechh
Confidence 34445556778888888654222 11234444444443 3666666655555555444 2667886 88884
Q ss_pred --CCceeeeeeCCCCHHHHHHHHHhh
Q 030928 141 --DGKPSDRFEGAFSKDQLIQRIENS 164 (169)
Q Consensus 141 --~g~~~~~~~G~~~~~~l~~~i~~~ 164 (169)
|--.+.+..|..++++.+.+++++
T Consensus 141 wYnr~gVeRVmGfct~~q~~rfl~ei 166 (270)
T COG2326 141 WYNRAGVERVMGFCTPKQYKRFLREI 166 (270)
T ss_pred hccccCeeeccccCCHHHHHHHHHHh
Confidence 334567889999999888888764
No 339
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=42.55 E-value=1.8e+02 Score=23.35 Aligned_cols=82 Identities=12% Similarity=0.049 Sum_probs=49.7
Q ss_pred CcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEcCCceeeeeeCCCCHHHHH
Q 030928 79 KPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSDRFEGAFSKDQLI 158 (169)
Q Consensus 79 ~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~ 158 (169)
+-.++.++......-..+...+.+++++.+=.+.++ +..--...-+-.+.-.|+||+.+--.-+.++...+..+.++++
T Consensus 250 ~Gp~i~~~D~~~i~~~~l~~~l~~~A~~~~I~~Q~~-~~~gGtDa~~~~~~~~Gvpt~~i~ip~Ry~Hs~~e~i~~~D~~ 328 (350)
T TIGR03107 250 EGTLLRFFDPGHIMLPRMKDFLLTTAEEAGIKYQYY-VAKGGTDAGAAHLKNSGVPSTTIGVCARYIHSHQTLYSIDDFL 328 (350)
T ss_pred CCceEEEecCCCCCCHHHHHHHHHHHHHcCCCcEEe-cCCCCchHHHHHHhCCCCcEEEEccCcccccChhheeeHHHHH
Confidence 333445777788888899999999999976444442 2111111112245667999988754445555555666666655
Q ss_pred HHH
Q 030928 159 QRI 161 (169)
Q Consensus 159 ~~i 161 (169)
+.+
T Consensus 329 ~~~ 331 (350)
T TIGR03107 329 AAQ 331 (350)
T ss_pred HHH
Confidence 544
No 340
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=42.37 E-value=1.3e+02 Score=21.79 Aligned_cols=45 Identities=13% Similarity=0.262 Sum_probs=25.2
Q ss_pred CCchhHHHhCCCC----CCcE--EEEE-cCCceee----eeeCCCCHHHHHHHHHh
Q 030928 119 EKYPQIADTYRIE----ALPT--FILF-KDGKPSD----RFEGAFSKDQLIQRIEN 163 (169)
Q Consensus 119 d~~~~l~~~~~v~----~~Pt--~~~~-~~g~~~~----~~~G~~~~~~l~~~i~~ 163 (169)
|.+.+++++|||- |.+- ++++ .+|.... ...-..+.++....++.
T Consensus 104 D~~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~it~NDlpvgRSVdE~lRLvqA 159 (196)
T KOG0852|consen 104 DLNHEISRDYGVLKEDEGIALRGLFIIDPDGILRQITINDLPVGRSVDETLRLVQA 159 (196)
T ss_pred ccchhhHHhcCceecCCCcceeeeEEEccccceEEeeecccCCCccHHHHHHHHHH
Confidence 4566899999975 5553 3444 4665432 12223456666665543
No 341
>cd07973 Spt4 Transcription elongation factor Spt4. Spt4 is a transcription elongation factor. Three transcription-elongation factors Spt4, Spt5, and Spt6, are conserved among eukaryotes and are essential for transcription via the modulation of chromatin structure. It is known that Spt4, Spt5, and Spt6 are general transcription-elongation factors, controlling transcription both positively and negatively in important regulatory and developmental roles. Spt4 functions entirely in the context of the Spt4-Spt5 heterodimer and it has been found only as a complex to Spt5 in Yeast and Human. Spt4 is a small protein that has zinc finger at the N-terminus. Spt5 is a large protein that has several interesting structural features of an acidic N-terminus, a single NGN domain, five or six KOW domains, and a set of simple C-termianl repeats. Spt4 binds to Spt5 NGN domain. Unlike Spt5, Spt4 is not essential for viability in yeast, however Spt4 is critical for normal function of the Spt4-Spt5 compl
Probab=42.37 E-value=35 Score=22.01 Aligned_cols=51 Identities=14% Similarity=0.277 Sum_probs=28.0
Q ss_pred EEcCCChhhhhhhH-------HHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCC-CcEEEE
Q 030928 85 FYATWCGPCQYMAP-------ILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEA-LPTFIL 138 (169)
Q Consensus 85 f~~~~C~~C~~~~~-------~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~-~Pt~~~ 138 (169)
|....|+.|..+.. ..+-....+.+ ++.+--.+...+++.+++.. +|=.+-
T Consensus 18 f~~~gCpnC~~~l~~~g~~~~v~~~tT~~f~G---~i~i~dP~~SwVAk~l~i~~~~pG~YA 76 (98)
T cd07973 18 FERDGCPNCEGYLDMKGNHERVYDCTSPNFEG---IIALMDPEKSWVARWQRIDKFVPGIYA 76 (98)
T ss_pred ccCCCCCCCcchhccCCCccccccccCCCcce---EEEEECCchhHHHHHhCCCCCCCCeEE
Confidence 77889999963321 11122333333 33333344568899998863 344333
No 342
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=42.29 E-value=66 Score=18.35 Aligned_cols=56 Identities=16% Similarity=0.094 Sum_probs=29.2
Q ss_pred EEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCC----chhHHHhCCCCCCcEEEEEcCCcee
Q 030928 84 DFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEK----YPQIADTYRIEALPTFILFKDGKPS 145 (169)
Q Consensus 84 ~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~----~~~l~~~~~v~~~Pt~~~~~~g~~~ 145 (169)
+|+.+.|+.|...+-.+++. +-.+....++... .+++.+......+|++.. +|..+
T Consensus 3 L~~~~~~~~~~~~~~~l~~~----gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~l 62 (73)
T cd03042 3 LYSYFRSSASYRVRIALNLK----GLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVI--DGLVL 62 (73)
T ss_pred EecCCCCcchHHHHHHHHHc----CCCCeEEEecCccCCcCChHHHHhCCCCCCCEEEE--CCEEE
Confidence 34455666666654444332 1134555565422 234455556778998754 55543
No 343
>COG4752 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.72 E-value=35 Score=23.88 Aligned_cols=28 Identities=32% Similarity=0.472 Sum_probs=21.9
Q ss_pred cCChhhHHHHHhcCCCcEEEEEEcCCCh
Q 030928 64 KQTFSSLDDLLQKSDKPVLVDFYATWCG 91 (169)
Q Consensus 64 ~~~~~~~~~~~~~~~~~vvv~f~~~~C~ 91 (169)
.++.+++...+...+++++++|..-|--
T Consensus 119 ~isy~~lr~~I~e~dkp~LilfGTGwGl 146 (190)
T COG4752 119 TISYSWLRNEIQERDKPWLILFGTGWGL 146 (190)
T ss_pred cccHHHHHHHHhhcCCcEEEEecCCCCC
Confidence 4566677777777899999999988853
No 344
>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX). NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.
Probab=41.65 E-value=1e+02 Score=20.34 Aligned_cols=90 Identities=11% Similarity=0.120 Sum_probs=51.8
Q ss_pred CCCcEEEEEEcCCCh-hhhhhhHHHHHHHHHh----cC----C--eEEEEEeCCCchhHHHhCCCC-CCcEEEEEc--CC
Q 030928 77 SDKPVLVDFYATWCG-PCQYMAPILNEVGAAL----KD----K--IQVVKIDTEKYPQIADTYRIE-ALPTFILFK--DG 142 (169)
Q Consensus 77 ~~~~vvv~f~~~~C~-~C~~~~~~l~~~~~~~----~~----~--v~~~~v~~d~~~~l~~~~~v~-~~Pt~~~~~--~g 142 (169)
+..+.+|+|...--. .-...++.++.++.++ +. . +-|+..+-+....+..-.+.. ..|-+++.+ +.
T Consensus 13 n~~p~lvlf~D~Edeg~l~~A~~llQpiAd~~~aka~~k~~dap~~f~~a~ede~tdsLRDf~nL~d~~P~LviLDip~r 92 (116)
T cd03071 13 NEGPCLVLFVDSEDEGESEAAKQLIQPIAEKIIAKYKAKEEEAPLLFFVAGEDDMTDSLRDYTNLPEAAPLLTILDMSAR 92 (116)
T ss_pred cCCceEEEEecccchhhHHHHHHHHHHHHHHHHHHhhccCCCcceeeeeeccchHHHHHHHhcCCCccCceEEEEecccc
Confidence 356888888854433 5666677776666543 21 1 334444444333333333443 568888775 32
Q ss_pred ceeeeeeCCCCHHHHHHHHHhhhc
Q 030928 143 KPSDRFEGAFSKDQLIQRIENSLS 166 (169)
Q Consensus 143 ~~~~~~~G~~~~~~l~~~i~~~l~ 166 (169)
++...-...++.+.+.+|+.+.++
T Consensus 93 ~~~v~~~eeIT~e~~~~fv~~ylA 116 (116)
T cd03071 93 AKYVMDVEEITPAIVEAFVSDFLA 116 (116)
T ss_pred ceEeCchHhcCHHHHHHHHHHhhC
Confidence 222222367889999999988763
No 345
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=40.67 E-value=1.6e+02 Score=22.17 Aligned_cols=65 Identities=12% Similarity=0.096 Sum_probs=39.2
Q ss_pred CCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCc-hhHHHhCCCCCCcEEEEEcCCceeeeeeCCCCHHHHHHHHHhh
Q 030928 88 TWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKY-PQIADTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENS 164 (169)
Q Consensus 88 ~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~-~~l~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~~~ 164 (169)
.-|++|++..=.+.+ .+-.+.+..||.... +++.+..-...+|++.- +|..+. +...|.++|++.
T Consensus 17 ~~cp~~~rv~i~L~e----kgi~~e~~~vd~~~~~~~fl~inP~g~vPvL~~--~g~~l~------ES~aI~eYL~e~ 82 (236)
T TIGR00862 17 GNCPFSQRLFMILWL----KGVVFNVTTVDLKRKPEDLQNLAPGTHPPFLTY--NTEVKT------DVNKIEEFLEET 82 (236)
T ss_pred CCCHhHHHHHHHHHH----cCCCcEEEEECCCCCCHHHHHHCcCCCCCEEEE--CCEEee------cHHHHHHHHHHH
Confidence 579999998866654 111366777887664 44444444667998754 565432 244455555543
No 346
>PLN02378 glutathione S-transferase DHAR1
Probab=40.52 E-value=1e+02 Score=22.34 Aligned_cols=51 Identities=20% Similarity=0.155 Sum_probs=30.2
Q ss_pred CCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCch-hHHHhCCCCCCcEEEEEcCCce
Q 030928 88 TWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYP-QIADTYRIEALPTFILFKDGKP 144 (169)
Q Consensus 88 ~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~-~l~~~~~v~~~Pt~~~~~~g~~ 144 (169)
.+|++|++..-.+++..- .+.+..||....+ ++.+-.-...+|++.. +|..
T Consensus 18 ~~~p~~~rv~~~L~e~gl----~~e~~~v~~~~~~~~~l~inP~G~VPvL~~--~~~~ 69 (213)
T PLN02378 18 GDCPFSQRALLTLEEKSL----TYKIHLINLSDKPQWFLDISPQGKVPVLKI--DDKW 69 (213)
T ss_pred CCCcchHHHHHHHHHcCC----CCeEEEeCcccCCHHHHHhCCCCCCCEEEE--CCEE
Confidence 459999998766644322 2455566654333 4444444678898753 5543
No 347
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=39.82 E-value=81 Score=22.82 Aligned_cols=36 Identities=14% Similarity=0.082 Sum_probs=26.5
Q ss_pred EEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEE
Q 030928 81 VLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKI 116 (169)
Q Consensus 81 vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v 116 (169)
.+-+|+..-||+|---...++++...++-.+.+..+
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~ 37 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPV 37 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEee
Confidence 344677888999999999999988766544555444
No 348
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.77 E-value=54 Score=23.08 Aligned_cols=41 Identities=15% Similarity=0.160 Sum_probs=31.1
Q ss_pred hHHHHHhc--CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC
Q 030928 69 SLDDLLQK--SDKPVLVDFYATWCGPCQYMAPILNEVGAALKD 109 (169)
Q Consensus 69 ~~~~~~~~--~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~ 109 (169)
.|..+.+. ..-..+|+.|.-.|.+.-.-.|.|-+-.++|.+
T Consensus 68 rfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan 110 (213)
T KOG0095|consen 68 RFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYAN 110 (213)
T ss_pred HHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhh
Confidence 45544432 345678889999999999999999888888875
No 349
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=39.23 E-value=50 Score=23.46 Aligned_cols=25 Identities=20% Similarity=0.121 Sum_probs=22.3
Q ss_pred EEEcCCChhhhhhhHHHHHHHHHhc
Q 030928 84 DFYATWCGPCQYMAPILNEVGAALK 108 (169)
Q Consensus 84 ~f~~~~C~~C~~~~~~l~~~~~~~~ 108 (169)
.|+..-||+|-...+.|.++.++++
T Consensus 3 ~~~D~~cP~cyl~~~~l~~~~~~~~ 27 (201)
T cd03024 3 IWSDVVCPWCYIGKRRLEKALAELG 27 (201)
T ss_pred EEecCcCccHHHHHHHHHHHHHhCC
Confidence 5778889999999999999999985
No 350
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=38.89 E-value=34 Score=24.72 Aligned_cols=25 Identities=32% Similarity=0.749 Sum_probs=13.9
Q ss_pred CChhhHHHHHhcCCCcEEEEEEcCC
Q 030928 65 QTFSSLDDLLQKSDKPVLVDFYATW 89 (169)
Q Consensus 65 ~~~~~~~~~~~~~~~~vvv~f~~~~ 89 (169)
++..++.+.+.+.++|+++.|.+-|
T Consensus 119 is~~~lr~~l~~~~~P~LllFGTGw 143 (185)
T PF09936_consen 119 ISYAELRRMLEEEDRPVLLLFGTGW 143 (185)
T ss_dssp B-HHHHHHHHHH--S-EEEEE--TT
T ss_pred cCHHHHHHHHhccCCeEEEEecCCC
Confidence 4566777777666788888888777
No 351
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=38.70 E-value=72 Score=24.73 Aligned_cols=102 Identities=15% Similarity=0.196 Sum_probs=58.3
Q ss_pred cccCChhhHHHHHhcC-CCc--EEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCch---hHHHhCCCCCCcE
Q 030928 62 AKKQTFSSLDDLLQKS-DKP--VLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYP---QIADTYRIEALPT 135 (169)
Q Consensus 62 ~~~~~~~~~~~~~~~~-~~~--vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~---~l~~~~~v~~~Pt 135 (169)
-++.+.+.|.+++..- .+. .-+.++.+.|..-..=.....+++++..--+.++.-|..+.. ++|++.+ .|+
T Consensus 161 QTT~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~vD~miVVGg~nSsNT~rL~ei~~~~~---~~t 237 (280)
T TIGR00216 161 QTTLSQEDTKEIVAELKARVPQKEVPVFNTICYATQNRQDAVKELAPEVDLMIVIGGKNSSNTTRLYEIAEEHG---PPS 237 (280)
T ss_pred cCCCcHHHHHHHHHHHHHhCCCcCCCCCCCcccccHHHHHHHHHHHhhCCEEEEECCCCCchHHHHHHHHHHhC---CCE
Confidence 3445555666554321 122 233456888988888788888888874321223333343333 4566665 567
Q ss_pred EEEE----------cCCceeeeeeCCCCHHHHHHHHHhhhc
Q 030928 136 FILF----------KDGKPSDRFEGAFSKDQLIQRIENSLS 166 (169)
Q Consensus 136 ~~~~----------~~g~~~~~~~G~~~~~~l~~~i~~~l~ 166 (169)
+.+- ++.+.+..-.|.-+++.+.+-+.+.|+
T Consensus 238 ~~Ie~~~el~~~~l~~~~~VGiTAGASTP~~li~eVi~~l~ 278 (280)
T TIGR00216 238 YLIETAEELPEEWLKGVKVVGITAGASTPDWIIEEVIRKIK 278 (280)
T ss_pred EEECChHHCCHHHhCCCCEEEEEecCCCCHHHHHHHHHHHH
Confidence 6643 223456666788888777666655553
No 352
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.68 E-value=1.2e+02 Score=21.95 Aligned_cols=71 Identities=11% Similarity=0.229 Sum_probs=43.9
Q ss_pred EEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCch-------hHHHhC---CCCCCcEEEEEcCCceeeeeeCCCCH
Q 030928 85 FYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYP-------QIADTY---RIEALPTFILFKDGKPSDRFEGAFSK 154 (169)
Q Consensus 85 f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~-------~l~~~~---~v~~~Pt~~~~~~g~~~~~~~G~~~~ 154 (169)
|....++.+...+|.|+....... ..++.||..+.. ++.+.+ .....|.+++-+.. ...|.++.
T Consensus 63 f~vWDvGGq~k~R~lW~~Y~~~t~--~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKq----D~~~als~ 136 (181)
T KOG0070|consen 63 FTVWDVGGQEKLRPLWKHYFQNTQ--GLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQ----DLPGALSA 136 (181)
T ss_pred EEEEecCCCcccccchhhhccCCc--EEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechh----hccccCCH
Confidence 333367788889999988877654 456678876543 233333 34577877665322 34567777
Q ss_pred HHHHHHH
Q 030928 155 DQLIQRI 161 (169)
Q Consensus 155 ~~l~~~i 161 (169)
.++.+.+
T Consensus 137 ~ei~~~L 143 (181)
T KOG0070|consen 137 AEITNKL 143 (181)
T ss_pred HHHHhHh
Confidence 7766665
No 353
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=38.50 E-value=82 Score=18.33 Aligned_cols=57 Identities=14% Similarity=0.153 Sum_probs=29.9
Q ss_pred EEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCC-CCCCcEEEEEcCCcee
Q 030928 83 VDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYR-IEALPTFILFKDGKPS 145 (169)
Q Consensus 83 v~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~-v~~~Pt~~~~~~g~~~ 145 (169)
.++|.+-|+.|+..+-.+++..- .+....++.+...+.....+ ...+|++.. +|..+
T Consensus 3 ~Ly~~~~~~~~~~v~~~L~~~~i----~~e~~~v~~~~~~~~~~~~~p~~~vP~l~~--~~~~l 60 (73)
T cd03076 3 TLTYFPVRGRAEAIRLLLADQGI----SWEEERVTYEEWQESLKPKMLFGQLPCFKD--GDLTL 60 (73)
T ss_pred EEEEeCCcchHHHHHHHHHHcCC----CCEEEEecHHHhhhhhhccCCCCCCCEEEE--CCEEE
Confidence 34566678888876655544422 24444555432222222333 456898753 55543
No 354
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=37.39 E-value=85 Score=18.18 Aligned_cols=65 Identities=18% Similarity=0.244 Sum_probs=35.5
Q ss_pred CChhhhhhhHHHHHHHHHhcCCeEEEEEe----CCCchhHHHhCCCCCCcEEEEEcCCceeeeeeCCCCHHHHHHHHHh
Q 030928 89 WCGPCQYMAPILNEVGAALKDKIQVVKID----TEKYPQIADTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIEN 163 (169)
Q Consensus 89 ~C~~C~~~~~~l~~~~~~~~~~v~~~~v~----~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~~ 163 (169)
.||+|++..=.+++..-.+ .+.++ .+ ....+.+.+--+-..+|++.. .+|+++. +-..|.++|++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~--~~~~v-~~~~~~~~~~~~~~~~~p~~~VP~L~~-~~g~vi~------eS~~I~~yL~~ 69 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPY--EIKVV-PLIPKGEQKPPEFLALNPRGKVPVLVD-PDGTVIN------ESLAILEYLEE 69 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTC--EEEEE-ETTTTBCTTCHBHHHHSTT-SSSEEEE-TTTEEEE------SHHHHHHHHHH
T ss_pred CchHhHHHHHHHHHhCCCC--EEEEE-eeecCccccChhhhccCcCeEEEEEEE-CCCCEee------CHHHHHHHHhc
Confidence 4899988876665543322 23333 12 112245666666778999776 4777543 35556666654
No 355
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=37.37 E-value=63 Score=20.05 Aligned_cols=40 Identities=23% Similarity=0.194 Sum_probs=25.7
Q ss_pred hhHHHhCCCCCCcEEEEEcCCceeeeeeCCCCHHHHHHHHHhhh
Q 030928 122 PQIADTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENSL 165 (169)
Q Consensus 122 ~~l~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~~~l 165 (169)
..+|.++|+.|+ +.=..+|.+.....| +.+.++++++.+.
T Consensus 24 ~~~A~~~gl~G~--V~N~~dg~V~i~~~G--~~~~l~~f~~~l~ 63 (91)
T PF00708_consen 24 KRIARKLGLTGW--VRNLPDGSVEIEAEG--EEEQLEEFIKWLK 63 (91)
T ss_dssp HHHHHHTT-EEE--EEE-TTSEEEEEEEE--EHHHHHHHHHHHH
T ss_pred HHHHHHhCCceE--EEECCCCEEEEEEEe--CHHHHHHHHHHHH
Confidence 367888998887 333357877666777 5666777776554
No 356
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=36.86 E-value=1.1e+02 Score=21.54 Aligned_cols=42 Identities=10% Similarity=0.370 Sum_probs=34.7
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCC
Q 030928 78 DKPVLVDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTE 119 (169)
Q Consensus 78 ~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~d 119 (169)
++-+.+.++++.++.|.-+...++.+++.+.+ .+.+-.+++.
T Consensus 127 ~~~l~l~Y~S~R~gl~~~~~Gli~g~A~~f~~~~v~i~~~~~~ 169 (171)
T PF07700_consen 127 DNELTLHYRSPRPGLCPYVIGLIRGAAKHFFELDVEIEHVECM 169 (171)
T ss_dssp TTEEEEEEEESSSSTHHHHHHHHHHHHHHTTEEEEEEEEEECC
T ss_pred CCEEEEEEECCCcCHHHHHHHHHHHHHHHhCCCCeEEEEeccc
Confidence 45678889999999999999999999999987 6777666654
No 357
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=36.50 E-value=54 Score=23.80 Aligned_cols=53 Identities=11% Similarity=0.180 Sum_probs=31.8
Q ss_pred EcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEcCCc
Q 030928 86 YATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGK 143 (169)
Q Consensus 86 ~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g~ 143 (169)
--++||+|.+.+-.+ .+.+. .+....++.|+.+.--+..|-+.+|-+.- .+|+
T Consensus 5 IYdHCPfcvrarmi~-Gl~ni---pve~~vL~nDDe~Tp~rmiG~KqVPiL~K-edg~ 57 (215)
T COG2999 5 IYDHCPFCVRARMIF-GLKNI---PVELHVLLNDDEETPIRMIGQKQVPILQK-EDGR 57 (215)
T ss_pred EeccChHHHHHHHHh-hccCC---ChhhheeccCcccChhhhhcccccceEEc-cccc
Confidence 347899998876332 11111 25555566666666667778888886432 2555
No 358
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=36.49 E-value=60 Score=24.01 Aligned_cols=28 Identities=11% Similarity=0.246 Sum_probs=21.2
Q ss_pred CCCchhHHHhCCCCCCcEEEEE-cCCcee
Q 030928 118 TEKYPQIADTYRIEALPTFILF-KDGKPS 145 (169)
Q Consensus 118 ~d~~~~l~~~~~v~~~Pt~~~~-~~g~~~ 145 (169)
.|.+..+.++|||..+|.++.- .+|+.+
T Consensus 169 fdQ~G~Lt~rF~I~~VPAvV~~~q~G~~l 197 (209)
T PRK13738 169 FDQNGVLCQRFGIDQVPARVSAVPGGRFL 197 (209)
T ss_pred EcCcchHHHhcCCeeeceEEEEcCCCCEE
Confidence 3555679999999999997752 577654
No 359
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=36.33 E-value=93 Score=23.34 Aligned_cols=72 Identities=14% Similarity=0.141 Sum_probs=42.3
Q ss_pred hhhhhhhHHHHHHHH-HhcCCeEEEEEeCCC---chhHHHhCCCCCCcEEEEEcCCceeeeeeCCCCHHHHHHHHHh
Q 030928 91 GPCQYMAPILNEVGA-ALKDKIQVVKIDTEK---YPQIADTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIEN 163 (169)
Q Consensus 91 ~~C~~~~~~l~~~~~-~~~~~v~~~~v~~d~---~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~~ 163 (169)
..+......+.++.+ ....++.|+.+-.-. ..++.+++++ -.|-+++-..|..+.........+++.+.|..
T Consensus 15 ~~~~~~~~~l~~~l~~~~~~~~~~v~~TGRs~~~~~~~~~~~~l-~~Pd~~I~svGt~I~~~~~~~~d~~w~~~i~~ 90 (247)
T PF05116_consen 15 DGDDEALARLEELLEQQARPEILFVYVTGRSLESVLRLLREYNL-PQPDYIITSVGTEIYYGENWQPDEEWQAHIDE 90 (247)
T ss_dssp HCHHHHHHHHHHHHHHHHCCGEEEEEE-SS-HHHHHHHHHHCT--EE-SEEEETTTTEEEESSTTEE-HHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhhCCCceEEEECCCCHHHHHHHHHhCCC-CCCCEEEecCCeEEEEcCCCcChHHHHHHHHh
Confidence 445556666666666 455568888776443 3456667776 35888888888877663344444556665544
No 360
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=35.64 E-value=74 Score=21.79 Aligned_cols=8 Identities=38% Similarity=1.252 Sum_probs=4.7
Q ss_pred Chhhhhhh
Q 030928 90 CGPCQYMA 97 (169)
Q Consensus 90 C~~C~~~~ 97 (169)
|+.||+++
T Consensus 88 CG~CRQ~i 95 (134)
T COG0295 88 CGACRQVL 95 (134)
T ss_pred cHHHHHHH
Confidence 66666544
No 361
>KOG4079 consensus Putative mitochondrial ribosomal protein mRpS25 [Translation, ribosomal structure and biogenesis]
Probab=35.50 E-value=32 Score=23.63 Aligned_cols=33 Identities=12% Similarity=0.246 Sum_probs=22.6
Q ss_pred cEEEEE-cCCceeeeeeCCCCHHHHHHHHHhhhc
Q 030928 134 PTFILF-KDGKPSDRFEGAFSKDQLIQRIENSLS 166 (169)
Q Consensus 134 Pt~~~~-~~g~~~~~~~G~~~~~~l~~~i~~~l~ 166 (169)
|...+| ++|+.+.........++|++.|.+.|.
T Consensus 75 PF~R~YlddGr~vL~Dld~~~r~eI~~hl~K~lG 108 (169)
T KOG4079|consen 75 PFARAYLDDGREVLFDLDGMKREEIEKHLAKTLG 108 (169)
T ss_pred hHHHheecCcceEEEEcccccHHHHHHHHHHHhC
Confidence 333344 678776666666788889888877764
No 362
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=34.94 E-value=68 Score=19.81 Aligned_cols=24 Identities=21% Similarity=0.508 Sum_probs=19.1
Q ss_pred hHHHhCCCCCCcEEEEEcCCceee
Q 030928 123 QIADTYRIEALPTFILFKDGKPSD 146 (169)
Q Consensus 123 ~l~~~~~v~~~Pt~~~~~~g~~~~ 146 (169)
..++.+++...+++++..+|.++.
T Consensus 29 K~~~~l~l~~~~~lvL~eDGT~Vd 52 (79)
T cd06538 29 KVLDALLLDCISSLVLDEDGTGVD 52 (79)
T ss_pred HHHHHcCCCCccEEEEecCCcEEc
Confidence 557788987667888889999774
No 363
>KOG0324 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.51 E-value=35 Score=25.23 Aligned_cols=54 Identities=11% Similarity=0.212 Sum_probs=39.3
Q ss_pred EEEEcCCChhhhhhhHHHHHHHHHhcC-CeEEEEEeCCCc-hhHHHhCCCCCCcEEE
Q 030928 83 VDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKIDTEKY-PQIADTYRIEALPTFI 137 (169)
Q Consensus 83 v~f~~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~d~~-~~l~~~~~v~~~Pt~~ 137 (169)
|+...+.| .+..+...+++++++|.+ ..+++.=||+.- .++|.++..+.+|.++
T Consensus 78 I~lG~Td~-~~~~v~~~le~L~~ey~G~~YhL~~kNCNHFsn~la~~Ltgk~IP~wi 133 (214)
T KOG0324|consen 78 ILLGSTDL-TEDDVRRILEELSEEYRGNSYHLLTKNCNHFSNELALQLTGKKIPSWV 133 (214)
T ss_pred EEecCCCC-CHHHHHHHHHHHHhhcCCceehhhhhccchhHHHHHHHHcCCCccHHH
Confidence 44555555 567788899999999987 367777777654 4678888888888654
No 364
>PHA03308 transcriptional regulator ICP4; Provisional
Probab=34.10 E-value=26 Score=30.96 Aligned_cols=26 Identities=19% Similarity=0.419 Sum_probs=16.8
Q ss_pred EEEcCCChhhhhhhHHHHHHHHHhcC
Q 030928 84 DFYATWCGPCQYMAPILNEVGAALKD 109 (169)
Q Consensus 84 ~f~~~~C~~C~~~~~~l~~~~~~~~~ 109 (169)
-.-+.|..+.+.-...+.-+..-|.+
T Consensus 1346 plaaswsdpskipqevlriisdyypd 1371 (1463)
T PHA03308 1346 PLAASWSDPSKIPQEVLRIISDYYPD 1371 (1463)
T ss_pred ccccccCCcccchHHHHHHHhhhCCC
Confidence 34578888887766666555555544
No 365
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=33.82 E-value=16 Score=25.15 Aligned_cols=12 Identities=33% Similarity=0.731 Sum_probs=10.8
Q ss_pred CChhhhhhhHHH
Q 030928 89 WCGPCQYMAPIL 100 (169)
Q Consensus 89 ~C~~C~~~~~~l 100 (169)
-||+|++..|.|
T Consensus 11 ~CPhCRQ~ipAL 22 (163)
T TIGR02652 11 RCPHCRQNIPAL 22 (163)
T ss_pred cCchhhcccchh
Confidence 599999999977
No 366
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=33.76 E-value=16 Score=25.15 Aligned_cols=12 Identities=33% Similarity=0.744 Sum_probs=10.8
Q ss_pred CChhhhhhhHHH
Q 030928 89 WCGPCQYMAPIL 100 (169)
Q Consensus 89 ~C~~C~~~~~~l 100 (169)
.||+|++..|.|
T Consensus 8 ~CPhCRq~ipAL 19 (161)
T PF09654_consen 8 QCPHCRQTIPAL 19 (161)
T ss_pred cCchhhcccchh
Confidence 599999999987
No 367
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=33.59 E-value=70 Score=19.84 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=19.1
Q ss_pred hHHHhCCCCCCcEEEEEcCCceee
Q 030928 123 QIADTYRIEALPTFILFKDGKPSD 146 (169)
Q Consensus 123 ~l~~~~~v~~~Pt~~~~~~g~~~~ 146 (169)
..|+.+++...++++++.+|.++.
T Consensus 29 K~~~~L~~~~~~~lvLeeDGT~Vd 52 (81)
T cd06537 29 KALETLLLSGVLTLVLEEDGTAVD 52 (81)
T ss_pred HHHHHhCCCCceEEEEecCCCEEc
Confidence 456778887778899999999774
No 368
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=32.97 E-value=35 Score=19.69 Aligned_cols=24 Identities=25% Similarity=0.534 Sum_probs=16.8
Q ss_pred CCCcEEEEEEcCC-----------ChhhhhhhHHH
Q 030928 77 SDKPVLVDFYATW-----------CGPCQYMAPIL 100 (169)
Q Consensus 77 ~~~~vvv~f~~~~-----------C~~C~~~~~~l 100 (169)
.+.+|+-+...-| ||.|+.....+
T Consensus 23 ~G~pVvALCGk~wvp~rdp~~~PVCP~Ck~iye~l 57 (58)
T PF11238_consen 23 MGTPVVALCGKVWVPTRDPKPFPVCPECKEIYESL 57 (58)
T ss_pred cCceeEeeeCceeCCCCCCCCCCCCcCHHHHHHhc
Confidence 3678877776544 99999876543
No 369
>COG4952 Predicted sugar isomerase [Cell envelope biogenesis, outer membrane]
Probab=32.89 E-value=16 Score=28.49 Aligned_cols=49 Identities=20% Similarity=0.360 Sum_probs=38.3
Q ss_pred EEEeCCCchhHHHhCCCCCCcEEEEEcCCceeeeeeCCCCHHHHHHHHHh
Q 030928 114 VKIDTEKYPQIADTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIEN 163 (169)
Q Consensus 114 ~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~~ 163 (169)
-.||+|.-..-..+|+| .+|.|-+-..|....++.|...+..+.+.|++
T Consensus 35 r~I~idai~akv~e~~v-avPSWgvgtgGTRFArFpg~GepRniFdkieD 83 (430)
T COG4952 35 RGIDIDAIFAKVAEFKV-AVPSWGVGTGGTRFARFPGEGEPRNIFDKIED 83 (430)
T ss_pred ccCcHHHHHHHHHHHee-ecccccccCCCceeeecCCCCCcchHHHHHHH
Confidence 34566655555667777 78999998899999999999988888887765
No 370
>PRK13669 hypothetical protein; Provisional
Probab=32.87 E-value=1.2e+02 Score=18.65 Aligned_cols=55 Identities=13% Similarity=0.208 Sum_probs=34.5
Q ss_pred HHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEcCCceeeeeeCCCCHHHHHHHHHhhhcc
Q 030928 100 LNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENSLSV 167 (169)
Q Consensus 100 l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~~~l~~ 167 (169)
++++ +++++ +.++..+|-.+-+.| ..-|--++ ||+.+. ..+++++.+.|.+.++.
T Consensus 20 ~~~L-e~dP~-~dVie~gCls~CG~C-----~~~~FAlV--ng~~V~----a~t~eeL~~kI~~~i~e 74 (78)
T PRK13669 20 FEKL-EKDPN-LDVLEYGCLGYCGIC-----SEGLFALV--NGEVVE----GETPEELVENIYAHLEE 74 (78)
T ss_pred HHHH-HhCCC-ceEEEcchhhhCcCc-----ccCceEEE--CCeEee----cCCHHHHHHHHHHHHhh
Confidence 3434 45554 777777777665555 23344344 887553 56888888888777753
No 371
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=32.21 E-value=66 Score=23.70 Aligned_cols=29 Identities=28% Similarity=0.452 Sum_probs=25.3
Q ss_pred cEEEEEEcCCChhhhhhhHHHHHHHHHhc
Q 030928 80 PVLVDFYATWCGPCQYMAPILNEVGAALK 108 (169)
Q Consensus 80 ~vvv~f~~~~C~~C~~~~~~l~~~~~~~~ 108 (169)
..|.+.+.|-|+.|--.-|.++++....+
T Consensus 2 ~~lhYifDPmCgWCyGa~Pll~~l~~~~g 30 (212)
T COG3531 2 VTLHYIFDPMCGWCYGAAPLLEALSAQPG 30 (212)
T ss_pred ceeEEecCcchhhhhCccHHHHHHHhcCC
Confidence 35778899999999999999999998863
No 372
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=32.21 E-value=67 Score=18.49 Aligned_cols=56 Identities=25% Similarity=0.402 Sum_probs=29.1
Q ss_pred EEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCch--hHHHhCCCCCCcEEEEEcCCcee
Q 030928 84 DFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYP--QIADTYRIEALPTFILFKDGKPS 145 (169)
Q Consensus 84 ~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~--~l~~~~~v~~~Pt~~~~~~g~~~ 145 (169)
+++.+.|+.|+..+=.+++..- .+....++..+.. ++.+......+|++.. +|..+
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~gi----~~e~~~~~~~~~~~~~~~~~~p~~~vP~L~~--~~~~l 60 (72)
T cd03039 3 LTYFNIRGRGEPIRLLLADAGV----EYEDVRITYEEWPELDLKPTLPFGQLPVLEI--DGKKL 60 (72)
T ss_pred EEEEcCcchHHHHHHHHHHCCC----CcEEEEeCHHHhhhhhhccCCcCCCCCEEEE--CCEEE
Confidence 4555778888877655543322 2344444433221 2223334568898754 55543
No 373
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.10 E-value=2e+02 Score=21.65 Aligned_cols=51 Identities=22% Similarity=0.427 Sum_probs=32.8
Q ss_pred hhHHHHHhcCCCcEEEEEE-c----CCChhhhhhhHHHHHHHHHhc-CCeEEEEEeC
Q 030928 68 SSLDDLLQKSDKPVLVDFY-A----TWCGPCQYMAPILNEVGAALK-DKIQVVKIDT 118 (169)
Q Consensus 68 ~~~~~~~~~~~~~vvv~f~-~----~~C~~C~~~~~~l~~~~~~~~-~~v~~~~v~~ 118 (169)
.++.++.....+.+|..|. . ..|+.|..+...+......+. ..+.++.|.-
T Consensus 64 ~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~dv~lv~VsR 120 (247)
T COG4312 64 KSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHDVTLVAVSR 120 (247)
T ss_pred hhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcCceEEEEec
Confidence 3566666555555555553 3 359999999988865544443 2488888753
No 374
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=31.73 E-value=89 Score=24.70 Aligned_cols=82 Identities=12% Similarity=0.170 Sum_probs=49.5
Q ss_pred CcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCc--hhHHHhCCCCCCcEEEEE------cC---------
Q 030928 79 KPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKY--PQIADTYRIEALPTFILF------KD--------- 141 (169)
Q Consensus 79 ~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~--~~l~~~~~v~~~Pt~~~~------~~--------- 141 (169)
..++|++ .|+.|++....|+.+..... .+.++.||+... +..++++.-..+|.+-+. .+
T Consensus 77 ~~~lIEL---GsG~~~Kt~~LL~aL~~~~~-~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~ 152 (319)
T TIGR03439 77 GSMLVEL---GSGNLRKVGILLEALERQKK-SVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPE 152 (319)
T ss_pred CCEEEEE---CCCchHHHHHHHHHHHhcCC-CceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccc
Confidence 3467776 57889999988888874432 488999998764 233334433455543331 11
Q ss_pred ---Cceeeee----eCCCCHHHHHHHHHhh
Q 030928 142 ---GKPSDRF----EGAFSKDQLIQRIENS 164 (169)
Q Consensus 142 ---g~~~~~~----~G~~~~~~l~~~i~~~ 164 (169)
+..+..+ .|..+.++-..++.++
T Consensus 153 ~~~~~r~~~flGSsiGNf~~~ea~~fL~~~ 182 (319)
T TIGR03439 153 NRSRPTTILWLGSSIGNFSRPEAAAFLAGF 182 (319)
T ss_pred ccCCccEEEEeCccccCCCHHHHHHHHHHH
Confidence 1122222 4567888888887665
No 375
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=31.71 E-value=34 Score=25.34 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=21.9
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHH
Q 030928 78 DKPVLVDFYATWCGPCQYMAPILNEVG 104 (169)
Q Consensus 78 ~~~vvv~f~~~~C~~C~~~~~~l~~~~ 104 (169)
.+++++.|....|++|+...+.+++..
T Consensus 84 ~~v~v~~f~d~~Cp~C~~~~~~l~~~~ 110 (244)
T COG1651 84 APVTVVEFFDYTCPYCKEAFPELKKKY 110 (244)
T ss_pred CCceEEEEecCcCccHHHHHHHHHHHh
Confidence 378888999999999988888887743
No 376
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=31.56 E-value=1.1e+02 Score=23.95 Aligned_cols=100 Identities=14% Similarity=0.140 Sum_probs=54.9
Q ss_pred ccCChhhHHHHHh---cCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCch---hHHHhCCCCCCcEE
Q 030928 63 KKQTFSSLDDLLQ---KSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYP---QIADTYRIEALPTF 136 (169)
Q Consensus 63 ~~~~~~~~~~~~~---~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~---~l~~~~~v~~~Pt~ 136 (169)
++.+.+.|.+++. +...-+.+.++.+.|..-..=.....+++++..--+.++.-+..+.. ++|++++ .|++
T Consensus 164 TT~~~~~~~~i~~~l~~~~~~~~v~~~nTIC~aT~~RQ~a~~~La~~vD~miVVGg~~SsNT~kL~~i~~~~~---~~t~ 240 (298)
T PRK01045 164 TTLSVDDTAEIIAALKERFPEIQGPPKDDICYATQNRQEAVKELAPQADLVIVVGSKNSSNSNRLREVAEEAG---APAY 240 (298)
T ss_pred CCCcHHHHHHHHHHHHHhCcCcccCCCCCcchhhHHHHHHHHHHHhhCCEEEEECCCCCccHHHHHHHHHHHC---CCEE
Confidence 3444455555443 22222333348899998888788888888864321222233333333 4555654 5565
Q ss_pred EEE----------cCCceeeeeeCCCCHHHHHHHHHhhh
Q 030928 137 ILF----------KDGKPSDRFEGAFSKDQLIQRIENSL 165 (169)
Q Consensus 137 ~~~----------~~g~~~~~~~G~~~~~~l~~~i~~~l 165 (169)
.+- ++-+.+..-.|.-+++.+.+-+.+.|
T Consensus 241 ~Ie~~~el~~~~l~~~~~VGitaGASTP~~li~eV~~~l 279 (298)
T PRK01045 241 LIDDASEIDPEWFKGVKTVGVTAGASAPEWLVQEVIARL 279 (298)
T ss_pred EECChHHCcHHHhcCCCEEEEEecCCCCHHHHHHHHHHH
Confidence 542 22334566667777776666555444
No 377
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=31.34 E-value=35 Score=29.42 Aligned_cols=19 Identities=16% Similarity=0.266 Sum_probs=9.4
Q ss_pred cEEEEEEcCCC---hhhhhhhH
Q 030928 80 PVLVDFYATWC---GPCQYMAP 98 (169)
Q Consensus 80 ~vvv~f~~~~C---~~C~~~~~ 98 (169)
..+|+|+...- ..|+....
T Consensus 140 sliiyf~das~~~ve~cq~w~~ 161 (1103)
T KOG1420|consen 140 SLIIYFIDASNPIVETCQNWYK 161 (1103)
T ss_pred ceEEEEEcCCChHHHhhhhhhh
Confidence 35566775443 23554443
No 378
>cd00307 RuBisCO_small_like Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit and related proteins. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits. This superfamily also contains specific proteins from cyanobacteria. CcmM plays a role in a CO2 concentrating mechanism, which cyanobacteria need to to overcome t
Probab=31.15 E-value=66 Score=20.08 Aligned_cols=30 Identities=27% Similarity=0.492 Sum_probs=19.3
Q ss_pred Chhh--hhhh---HHHHHHHHHhcCC-eEEEEEeCC
Q 030928 90 CGPC--QYMA---PILNEVGAALKDK-IQVVKIDTE 119 (169)
Q Consensus 90 C~~C--~~~~---~~l~~~~~~~~~~-v~~~~v~~d 119 (169)
|..| +... .++++-.+++++. |.++.+|..
T Consensus 36 ~f~~~~~~~~~Vl~el~~c~~~~p~~YVRlig~D~~ 71 (84)
T cd00307 36 CGPIEGRSEAQVLAALEACLAEHPGEYVRLIGIDPK 71 (84)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCeEEEEEEeCC
Confidence 6777 5444 4555556677763 788888855
No 379
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=31.05 E-value=1.5e+02 Score=19.10 Aligned_cols=21 Identities=19% Similarity=0.485 Sum_probs=15.1
Q ss_pred EEEEEcCCChhhhhhhH-HHHH
Q 030928 82 LVDFYATWCGPCQYMAP-ILNE 102 (169)
Q Consensus 82 vv~f~~~~C~~C~~~~~-~l~~ 102 (169)
|-.||-+-||.|+++.. .|..
T Consensus 3 v~vyyESlCPd~~~fi~~~L~p 24 (108)
T PF03227_consen 3 VEVYYESLCPDCRRFITNQLFP 24 (108)
T ss_pred EEEEEEecCHhHHHHHHHHHHH
Confidence 55788999999998633 3443
No 380
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=30.73 E-value=1.8e+02 Score=21.86 Aligned_cols=51 Identities=24% Similarity=0.236 Sum_probs=35.2
Q ss_pred CChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEcCCceeee
Q 030928 89 WCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSDR 147 (169)
Q Consensus 89 ~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~ 147 (169)
.-.+|..++..+.+++.+++..+.++.=|++- +..|.- .++-+++|+++..
T Consensus 167 DmkHsv~iMk~Lrrla~el~KtiviVlHDINf----AS~YsD----~IVAlK~G~vv~~ 217 (252)
T COG4604 167 DMKHSVQIMKILRRLADELGKTIVVVLHDINF----ASCYSD----HIVALKNGKVVKQ 217 (252)
T ss_pred chHHHHHHHHHHHHHHHHhCCeEEEEEecccH----HHhhhh----heeeecCCEEEec
Confidence 46799999999999999998655554444332 333322 4677889988653
No 381
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=30.18 E-value=2.7e+02 Score=22.22 Aligned_cols=34 Identities=18% Similarity=0.020 Sum_probs=22.2
Q ss_pred cCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC
Q 030928 76 KSDKPVLVDFYATWCGPCQYMAPILNEVGAALKD 109 (169)
Q Consensus 76 ~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~ 109 (169)
+.++.+||.|-+..-.+|..-.+.+.++.+++.+
T Consensus 177 ~~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~ 210 (335)
T PF04007_consen 177 DDEPYIVVRPEAWKASYDNGKKSILPEIIEELEK 210 (335)
T ss_pred CCCCEEEEEeccccCeeecCccchHHHHHHHHHh
Confidence 3456788888766666777666666666665543
No 382
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=29.98 E-value=77 Score=26.35 Aligned_cols=46 Identities=20% Similarity=0.510 Sum_probs=32.6
Q ss_pred CCCchhHHHhCCCCCCcEEEEEcCCceeeeeeCCCCHHHHHHHHHhhhc
Q 030928 118 TEKYPQIADTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENSLS 166 (169)
Q Consensus 118 ~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~~~l~ 166 (169)
+-+.-++.++||+.++ .+++.++|+. ...|....+++.+.+.+.|+
T Consensus 352 vvdP~~l~~kygvD~v-RyflLr~~~l--~~Dgdy~eekl~k~~n~~La 397 (578)
T KOG0436|consen 352 VVDPFELVQKYGVDAV-RYFLLREGEL--GNDGDYSEEKLIKIVNAHLA 397 (578)
T ss_pred ccCHHHHHHHhCccce-eeEeeecccc--CCCCCccHHHHHHHHHHHHH
Confidence 3455689999999988 4455577764 34577788888887766654
No 383
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.56 E-value=1.6e+02 Score=18.92 Aligned_cols=80 Identities=16% Similarity=0.238 Sum_probs=46.2
Q ss_pred EEEEEEcCC-Chhhhhh------hHHHHH-HHHHhcCC-eEEEEEeCCCc------hhHHHhC--CCCCCcEEEEEcCCc
Q 030928 81 VLVDFYATW-CGPCQYM------APILNE-VGAALKDK-IQVVKIDTEKY------PQIADTY--RIEALPTFILFKDGK 143 (169)
Q Consensus 81 vvv~f~~~~-C~~C~~~------~~~l~~-~~~~~~~~-v~~~~v~~d~~------~~l~~~~--~v~~~Pt~~~~~~g~ 143 (169)
-++.|.+.. |..|..+ ...|+. +.++|+++ +.+-.||+.+. .+++.+. .-.-+|.+++ +++
T Consensus 6 ~l~VyGae~iCASCV~aPtsKdt~eWLeaalkRKyp~~~F~~~YiDI~n~~~e~~~~~~aekI~~dey~YPlivv--ede 83 (106)
T COG4837 6 KLVVYGAEVICASCVNAPTSKDTYEWLEAALKRKYPNQPFKYTYIDITNPPLEDHDLQFAEKIEQDEYFYPLIVV--EDE 83 (106)
T ss_pred EEEEecchhhhHHhcCCCcchhHHHHHHHHHhccCCCCCcEEEEEEcCCCccHHHHHHHHHHHhcccccceEEEE--cce
Confidence 455566654 8888653 333333 34566653 55556666321 1333332 2335788777 777
Q ss_pred eeeeeeCCCCHHHHHHHHHhh
Q 030928 144 PSDRFEGAFSKDQLIQRIENS 164 (169)
Q Consensus 144 ~~~~~~G~~~~~~l~~~i~~~ 164 (169)
++. .|.+...++.+++++.
T Consensus 84 iVa--eGnprlKdiy~~m~d~ 102 (106)
T COG4837 84 IVA--EGNPRLKDIYRVMDDK 102 (106)
T ss_pred Eee--cCCchHHHHHHHHHHh
Confidence 654 5777778888777654
No 384
>PF09499 RE_ApaLI: ApaLI-like restriction endonuclease; InterPro: IPR019036 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry includes R.ApaLI and R.XbaI restriction endonucleases. ApaLI recognises and cleaves the sequence GTGCAC.
Probab=29.23 E-value=1.8e+02 Score=20.98 Aligned_cols=41 Identities=12% Similarity=0.167 Sum_probs=31.8
Q ss_pred hHHHHHhcC-CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC
Q 030928 69 SLDDLLQKS-DKPVLVDFYATWCGPCQYMAPILNEVGAALKD 109 (169)
Q Consensus 69 ~~~~~~~~~-~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~ 109 (169)
++.+.+.+. -+|+.|.||.|.-..-.+....|+.+....++
T Consensus 133 trikvi~~aGy~PIrimf~~P~r~~~~~iq~~L~tlY~gvgG 174 (191)
T PF09499_consen 133 TRIKVIKSAGYKPIRIMFYYPNREQAIRIQTTLKTLYNGVGG 174 (191)
T ss_pred HHHHHHHHCCCcceEEEEeCCCHHHHHHHHHHHHHHHHhcCc
Confidence 344555544 47999999999988888888888888887766
No 385
>PLN00062 TATA-box-binding protein; Provisional
Probab=29.15 E-value=1.1e+02 Score=22.08 Aligned_cols=30 Identities=23% Similarity=0.454 Sum_probs=23.2
Q ss_pred EEEEEcCCceeeeeeCCCCHHHHHHHHHhhhc
Q 030928 135 TFILFKDGKPSDRFEGAFSKDQLIQRIENSLS 166 (169)
Q Consensus 135 t~~~~~~g~~~~~~~G~~~~~~l~~~i~~~l~ 166 (169)
++.+|..|+++ ..|..+.+++++.++.+++
T Consensus 140 ~~liF~sGkvv--itGaks~~~~~~ai~~i~p 169 (179)
T PLN00062 140 VLLIFVSGKIV--ITGAKVREEIYTAFENIYP 169 (179)
T ss_pred EEEEeCCCEEE--EEecCCHHHHHHHHHHHHH
Confidence 56677788875 5788899999988877764
No 386
>PF02484 Rhabdo_NV: Rhabdovirus Non-virion protein; InterPro: IPR003490 Infectious hematopoietic necrosis virus (IHNV) is a member of the family Rhabdoviridae. The non-virion protein (NV) is coded for by one of the six genes of the IHNV genome [], but is absent in vesiculovirus-like rhabdovirus [].
Probab=29.14 E-value=53 Score=20.77 Aligned_cols=38 Identities=18% Similarity=0.166 Sum_probs=26.0
Q ss_pred hCCCCCCcEEEEEcCCceeeeeeCCCCHHHHHHHHHhh
Q 030928 127 TYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENS 164 (169)
Q Consensus 127 ~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~~~ 164 (169)
+|.+...-.=++|++|+++++..|.-....+-..+..+
T Consensus 18 ryk~~va~hgflfddg~~vw~e~~d~~w~rl~~vv~al 55 (111)
T PF02484_consen 18 RYKNEVARHGFLFDDGDIVWSEDDDETWNRLCDVVNAL 55 (111)
T ss_pred HHHhhccccceEecCCcEEEecCChHHHHHHHHHHHHH
Confidence 56665555667889999999988776665555554433
No 387
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=28.86 E-value=95 Score=26.72 Aligned_cols=56 Identities=14% Similarity=0.287 Sum_probs=39.8
Q ss_pred eEEEEEeCCCchhHHHhCCCCCCcEEEEEcCCceeeeeeCCCCHHHHHHHHHhhhcc
Q 030928 111 IQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENSLSV 167 (169)
Q Consensus 111 v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~~~l~~ 167 (169)
+....+-..++..+.+ +++...|+..++++|+.........+.+.+.+.|++++..
T Consensus 216 v~vr~~~d~q~~~~~~-l~~~~~~~~llfrnG~~q~l~~~~~s~~~y~~~I~~~lg~ 271 (606)
T KOG1731|consen 216 VGVRARLDTQNFPLFG-LKPDNFPLALLFRNGEQQPLWPSSSSRSAYVKKIDDLLGD 271 (606)
T ss_pred cceEEEecchhccccc-cCCCCchhhhhhcCCcccccccccccHHHHHHHHHHHhcC
Confidence 4444444444455565 8999999999999998776666666777777777777653
No 388
>PRK00394 transcription factor; Reviewed
Probab=28.76 E-value=1.1e+02 Score=21.94 Aligned_cols=30 Identities=30% Similarity=0.449 Sum_probs=24.0
Q ss_pred EEEEEcCCceeeeeeCCCCHHHHHHHHHhhhc
Q 030928 135 TFILFKDGKPSDRFEGAFSKDQLIQRIENSLS 166 (169)
Q Consensus 135 t~~~~~~g~~~~~~~G~~~~~~l~~~i~~~l~ 166 (169)
++.+|..|+++ ..|..+.+++.+.++.+++
T Consensus 141 ~~lIF~SGKvv--itGaks~~~~~~a~~~i~~ 170 (179)
T PRK00394 141 VVLLFGSGKLV--ITGAKSEEDAEKAVEKILE 170 (179)
T ss_pred EEEEEcCCEEE--EEecCCHHHHHHHHHHHHH
Confidence 67788889875 5799999999988887754
No 389
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=28.45 E-value=1.1e+02 Score=21.84 Aligned_cols=30 Identities=30% Similarity=0.531 Sum_probs=23.6
Q ss_pred EEEEEcCCceeeeeeCCCCHHHHHHHHHhhhc
Q 030928 135 TFILFKDGKPSDRFEGAFSKDQLIQRIENSLS 166 (169)
Q Consensus 135 t~~~~~~g~~~~~~~G~~~~~~l~~~i~~~l~ 166 (169)
++.+|..|+++ ..|..+.+++++.++.+++
T Consensus 140 ~~liF~sGkvv--itGaks~~~~~~a~~~i~p 169 (174)
T cd04516 140 VLLIFVSGKIV--LTGAKSREEIYQAFENIYP 169 (174)
T ss_pred EEEEeCCCEEE--EEecCCHHHHHHHHHHHHH
Confidence 46677788875 5788899999999888764
No 390
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=28.14 E-value=1.2e+02 Score=21.73 Aligned_cols=30 Identities=33% Similarity=0.507 Sum_probs=24.0
Q ss_pred EEEEEcCCceeeeeeCCCCHHHHHHHHHhhhc
Q 030928 135 TFILFKDGKPSDRFEGAFSKDQLIQRIENSLS 166 (169)
Q Consensus 135 t~~~~~~g~~~~~~~G~~~~~~l~~~i~~~l~ 166 (169)
++++|..|+++ ..|..+.++++..++.+.+
T Consensus 140 ~~lIF~SGKvv--itGaks~~~~~~a~~~i~~ 169 (174)
T cd04518 140 VLLLFSSGKMV--ITGAKSEEDAKRAVEKLLS 169 (174)
T ss_pred EEEEeCCCEEE--EEecCCHHHHHHHHHHHHH
Confidence 57778889875 5799999999998887754
No 391
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=27.89 E-value=1.1e+02 Score=21.74 Aligned_cols=30 Identities=23% Similarity=0.490 Sum_probs=23.6
Q ss_pred EEEEEcCCceeeeeeCCCCHHHHHHHHHhhhc
Q 030928 135 TFILFKDGKPSDRFEGAFSKDQLIQRIENSLS 166 (169)
Q Consensus 135 t~~~~~~g~~~~~~~G~~~~~~l~~~i~~~l~ 166 (169)
|+.+|..|+++ ..|..+.+++++.++.+++
T Consensus 141 t~lIF~sGkvv--itGaks~~~~~~a~~~i~~ 170 (174)
T cd00652 141 VLLIFVSGKIV--ITGAKSREDIYEAVEKIYP 170 (174)
T ss_pred EEEEEcCCEEE--EEecCCHHHHHHHHHHHHH
Confidence 56677888875 5789999999988887764
No 392
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=27.82 E-value=1.7e+02 Score=18.64 Aligned_cols=74 Identities=20% Similarity=0.330 Sum_probs=42.2
Q ss_pred EEcC-CChhhhhh------hHHHHH-HHHHhcCC-eEEEEEeCCCch------hHHHhC--CCCCCcEEEEEcCCceeee
Q 030928 85 FYAT-WCGPCQYM------APILNE-VGAALKDK-IQVVKIDTEKYP------QIADTY--RIEALPTFILFKDGKPSDR 147 (169)
Q Consensus 85 f~~~-~C~~C~~~------~~~l~~-~~~~~~~~-v~~~~v~~d~~~------~l~~~~--~v~~~Pt~~~~~~g~~~~~ 147 (169)
|.|. -|.-|..+ ..-|+. +.++|+++ +.|-.||+.+.+ +++++. .-.-+|.+++ +|+++.
T Consensus 3 YGAe~~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i--~~eiV~- 79 (93)
T PF07315_consen 3 YGAEVICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVI--NDEIVA- 79 (93)
T ss_dssp EE-SS--GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEE--TTEEEE-
T ss_pred ccccccchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEE--CCEEEe-
Confidence 4444 48888653 333333 56778875 888888876543 334332 3446798888 898875
Q ss_pred eeCCCCHHHHHHHHH
Q 030928 148 FEGAFSKDQLIQRIE 162 (169)
Q Consensus 148 ~~G~~~~~~l~~~i~ 162 (169)
.|.+....+.++++
T Consensus 80 -EGnp~LK~I~~~~e 93 (93)
T PF07315_consen 80 -EGNPQLKDIYEEME 93 (93)
T ss_dssp -ESS--HHHHHHHHH
T ss_pred -cCCccHHHHHHhhC
Confidence 58888887777664
No 393
>PF02591 DUF164: Putative zinc ribbon domain; InterPro: IPR003743 This entry describes proteins of unknown function.
Probab=27.44 E-value=1.2e+02 Score=16.90 Aligned_cols=38 Identities=18% Similarity=0.349 Sum_probs=27.3
Q ss_pred hhHHHHHhcCCCcEEEEEEcCCChhhhhhhH--HHHHHHH
Q 030928 68 SSLDDLLQKSDKPVLVDFYATWCGPCQYMAP--ILNEVGA 105 (169)
Q Consensus 68 ~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~--~l~~~~~ 105 (169)
+.|+.+.+..+...++..-...|..|....| .+.++..
T Consensus 3 ~~Y~rl~~~~~g~~va~v~~~~C~gC~~~l~~~~~~~i~~ 42 (56)
T PF02591_consen 3 AEYERLRKRKGGVAVARVEGGTCSGCHMELPPQELNEIRK 42 (56)
T ss_pred HHHHHHHhhcCCcEEEEeeCCccCCCCEEcCHHHHHHHHc
Confidence 3566666555678899999999999987766 4455543
No 394
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=27.15 E-value=2.7e+02 Score=20.92 Aligned_cols=76 Identities=20% Similarity=0.240 Sum_probs=42.0
Q ss_pred CCChhhhhhhH-HHHHHHHHhcCCeEEEEEeCCCchh-H----HHhCCCCCCcEEEEEcCCc-eeeeeeCCCCHHHHHHH
Q 030928 88 TWCGPCQYMAP-ILNEVGAALKDKIQVVKIDTEKYPQ-I----ADTYRIEALPTFILFKDGK-PSDRFEGAFSKDQLIQR 160 (169)
Q Consensus 88 ~~C~~C~~~~~-~l~~~~~~~~~~v~~~~v~~d~~~~-l----~~~~~v~~~Pt~~~~~~g~-~~~~~~G~~~~~~l~~~ 160 (169)
..|..|+.++- .+.+++.+.+-...+..-+.|+..+ + .+.-++.+.+......+|. .+.+---....+++.++
T Consensus 110 ~~c~~c~~~R~~~l~~~a~~~g~~~Ia~GH~~dD~~Et~l~nl~rg~~l~~m~~~~~~~~~~i~iiRPLl~~~k~eI~~y 189 (258)
T PRK10696 110 TTCSLCSRLRRGILYRTARELGATKIALGHHRDDILETLFLNMFYGGKLKAMPPKLLSDDGKHIVIRPLAYVAEKDIIKF 189 (258)
T ss_pred ChhHHHHHHHHHHHHHHHHHcCCCEEEEcCchHHHHHHHHHHHHhCCcccccCCeeecCCCceeEEecCccCCHHHHHHH
Confidence 46889988765 5677777765445455555555432 1 2222456665544333443 23333344677777777
Q ss_pred HHh
Q 030928 161 IEN 163 (169)
Q Consensus 161 i~~ 163 (169)
.++
T Consensus 190 ~~~ 192 (258)
T PRK10696 190 AEA 192 (258)
T ss_pred HHH
Confidence 654
No 395
>PF11317 DUF3119: Protein of unknown function (DUF3119); InterPro: IPR021467 This family of proteins has no known function.
Probab=26.81 E-value=1.5e+02 Score=19.83 Aligned_cols=35 Identities=20% Similarity=0.361 Sum_probs=28.7
Q ss_pred CCCcEEEEEcCCceeeeeeCCCCHHHHHHHHHhhh
Q 030928 131 EALPTFILFKDGKPSDRFEGAFSKDQLIQRIENSL 165 (169)
Q Consensus 131 ~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~~~l 165 (169)
.++|-+++||+-+-++-..--.+..++++-+++..
T Consensus 81 p~~PiL~YFkE~qsiHFlPiiFd~~~L~~~l~~r~ 115 (116)
T PF11317_consen 81 PGFPILFYFKETQSIHFLPIIFDPKQLREQLEERC 115 (116)
T ss_pred CCCCEEEEEecCCcceeeeeecCHHHHHHHHHHhC
Confidence 48899999998777887777888999988887643
No 396
>COG5270 PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis]
Probab=26.81 E-value=25 Score=25.50 Aligned_cols=37 Identities=24% Similarity=0.547 Sum_probs=23.8
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEE
Q 030928 78 DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKI 116 (169)
Q Consensus 78 ~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v 116 (169)
.+.++=.||..||..|.. |.+.+-....++++.-+.+
T Consensus 5 ~~~~~gk~~iyWCe~cNl--Pl~~~~c~~cg~~~~~l~L 41 (202)
T COG5270 5 MPVVLGKFPIYWCEKCNL--PLLGRRCSVCGSKVEELRL 41 (202)
T ss_pred cceeecccceeehhhCCC--ccccccccccCCcceEEEe
Confidence 345666789999999964 5555555555554544444
No 397
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=26.72 E-value=2.4e+02 Score=20.00 Aligned_cols=37 Identities=24% Similarity=0.371 Sum_probs=27.4
Q ss_pred hCCCCCCcE--EEEEcCCceeeeeeCCCCHHHHHHHHHh
Q 030928 127 TYRIEALPT--FILFKDGKPSDRFEGAFSKDQLIQRIEN 163 (169)
Q Consensus 127 ~~~v~~~Pt--~~~~~~g~~~~~~~G~~~~~~l~~~i~~ 163 (169)
.++.+.--. +++.++|++.....|.++..++...|+-
T Consensus 140 AWqL~e~~SaivVlDk~G~VkfvkeGaLt~aevQ~Vi~l 178 (184)
T COG3054 140 AWQLKEESSAVVVLDKDGRVKFVKEGALTQAEVQQVIDL 178 (184)
T ss_pred hhccccccceEEEEcCCCcEEEEecCCccHHHHHHHHHH
Confidence 566655443 4444699999999999999888887754
No 398
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=26.43 E-value=1.2e+02 Score=18.76 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=18.5
Q ss_pred hHHHhCCCC-CCcEEEEEcCCceee
Q 030928 123 QIADTYRIE-ALPTFILFKDGKPSD 146 (169)
Q Consensus 123 ~l~~~~~v~-~~Pt~~~~~~g~~~~ 146 (169)
..|+.+++. ..++++++.+|+++.
T Consensus 29 K~~~~l~~~~~~~~lvL~eDGT~Vd 53 (78)
T cd06539 29 KTLDALVITSGLVTLVLEEDGTVVD 53 (78)
T ss_pred HHHHHhCCCCCCcEEEEeCCCCEEc
Confidence 567788884 467888999999774
No 399
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=26.42 E-value=1.5e+02 Score=23.61 Aligned_cols=41 Identities=15% Similarity=0.109 Sum_probs=31.5
Q ss_pred CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC-CeEEEEEe
Q 030928 77 SDKPVLVDFYATWCGPCQYMAPILNEVGAALKD-KIQVVKID 117 (169)
Q Consensus 77 ~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~ 117 (169)
.+|||++.|-...=+.++.+...|.+.+++.+. .+.++.+.
T Consensus 157 dGKPv~~Iy~p~~~pd~~~~~~~wr~~a~~~G~~giyii~~~ 198 (345)
T PF14307_consen 157 DGKPVFLIYRPGDIPDIKEMIERWREEAKEAGLPGIYIIAVQ 198 (345)
T ss_pred CCEEEEEEECcccccCHHHHHHHHHHHHHHcCCCceEEEEEe
Confidence 378998877776678889999999999888653 36666554
No 400
>COG5575 ORC2 Origin recognition complex, subunit 2 [DNA replication, recombination, and repair]
Probab=25.75 E-value=2.3e+02 Score=23.30 Aligned_cols=65 Identities=18% Similarity=0.346 Sum_probs=38.0
Q ss_pred hhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEE-cCCceeeeeeCCCCHHHHHHHHHhhh
Q 030928 92 PCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILF-KDGKPSDRFEGAFSKDQLIQRIENSL 165 (169)
Q Consensus 92 ~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~-~~g~~~~~~~G~~~~~~l~~~i~~~l 165 (169)
.|+.+.++|-++++.+ .+.||.+.... .+.++|-+..+|.+=++ -||- .-.....++.+-|.++|
T Consensus 242 q~k~F~q~~feL~~~F--nLLFYG~GSK~--~fL~~f~~~~LP~~P~~~lnGY-----~p~~~~r~Vl~ei~e~l 307 (535)
T COG5575 242 QCKNFHQELFELARSF--NLLFYGYGSKT--AFLRKFFPSALPCFPIFYLNGY-----CPIMSRREVLAEIMEAL 307 (535)
T ss_pred eccccHHHHHHHhhhc--eEEEEecCchH--HHHHHHhHHhcCCcceeeeccc-----CccccHHHHHHHHHHHh
Confidence 5888999999999987 47888876544 34555544444543322 1552 11234444555444444
No 401
>PRK09864 putative peptidase; Provisional
Probab=25.74 E-value=3.6e+02 Score=21.75 Aligned_cols=83 Identities=16% Similarity=0.050 Sum_probs=46.9
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEEEEcCCceeeeeeCCCCHHHH
Q 030928 78 DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFILFKDGKPSDRFEGAFSKDQL 157 (169)
Q Consensus 78 ~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l 157 (169)
+.|++ .++....-.-+.+...+.+++++.+=.+.+-....--...-.-++.-.|+||..+----+.++...+..+.+++
T Consensus 249 ~Gp~i-~~~D~~~i~~~~l~~~l~~~A~~~~Ip~Q~~~~~~ggTDa~~i~~~~~Gvpt~~isiP~RY~Hs~~e~~~~~D~ 327 (356)
T PRK09864 249 QGPGL-MLFDKRYFPNQKLVAALKSCAAHNDLPLQFSTMKTGATDGGRYNVMGGGRPVVALCLPTRYLHANSGMISKADY 327 (356)
T ss_pred CCCeE-EEccCCccCCHHHHHHHHHHHHHcCCCceEEEcCCCCchHHHHHHhCCCCcEEEEeeccCcCCCcceEeEHHHH
Confidence 44555 46666777778888899999998653333322211111112224455689997775444445555555555555
Q ss_pred HHHH
Q 030928 158 IQRI 161 (169)
Q Consensus 158 ~~~i 161 (169)
++.+
T Consensus 328 e~~~ 331 (356)
T PRK09864 328 DALL 331 (356)
T ss_pred HHHH
Confidence 5444
No 402
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=25.28 E-value=1.9e+02 Score=18.54 Aligned_cols=40 Identities=15% Similarity=0.125 Sum_probs=22.2
Q ss_pred EEEcCCChhhhhhhHHHHHHHHHhc-CCeEEEEEeCCCchh
Q 030928 84 DFYATWCGPCQYMAPILNEVGAALK-DKIQVVKIDTEKYPQ 123 (169)
Q Consensus 84 ~f~~~~C~~C~~~~~~l~~~~~~~~-~~v~~~~v~~d~~~~ 123 (169)
.+|-+.+..-..++..-+++...+. .++.|-.||+..+++
T Consensus 4 ~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~ 44 (99)
T PF04908_consen 4 KVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEE 44 (99)
T ss_dssp EEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HH
T ss_pred EEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHH
Confidence 3344555556666666666665554 369999999887654
No 403
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=25.12 E-value=1.5e+02 Score=21.43 Aligned_cols=30 Identities=20% Similarity=0.361 Sum_probs=24.5
Q ss_pred EEEEEcCCceeeeeeCCCCHHHHHHHHHhhhc
Q 030928 135 TFILFKDGKPSDRFEGAFSKDQLIQRIENSLS 166 (169)
Q Consensus 135 t~~~~~~g~~~~~~~G~~~~~~l~~~i~~~l~ 166 (169)
++++|+.|+++ .+|.-+.++++..++++++
T Consensus 55 a~LIF~SGK~V--cTGaKs~ed~~~av~~~~~ 84 (185)
T COG2101 55 AALIFRSGKVV--CTGAKSVEDVHRAVKKLAK 84 (185)
T ss_pred eEEEEecCcEE--EeccCcHHHHHHHHHHHHH
Confidence 67888999875 5799999999988877654
No 404
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=24.91 E-value=1.6e+02 Score=17.33 Aligned_cols=69 Identities=10% Similarity=0.141 Sum_probs=37.6
Q ss_pred EEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCC----CchhHHHhCCCCCCcEEEEEcC--CceeeeeeCCCCHHHH
Q 030928 84 DFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTE----KYPQIADTYRIEALPTFILFKD--GKPSDRFEGAFSKDQL 157 (169)
Q Consensus 84 ~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d----~~~~l~~~~~v~~~Pt~~~~~~--g~~~~~~~G~~~~~~l 157 (169)
+|+.+ ++.|++..-.+++..- .+....++.. ..+++.+......+|++.. .+ |..+. +-..|
T Consensus 4 Ly~~~-~~~~~~v~~~l~~~gl----~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~-~~~~g~~l~------eS~aI 71 (81)
T cd03048 4 LYTHG-TPNGFKVSIMLEELGL----PYEIHPVDISKGEQKKPEFLKINPNGRIPAIVD-HNGTPLTVF------ESGAI 71 (81)
T ss_pred EEeCC-CCChHHHHHHHHHcCC----CcEEEEecCcCCcccCHHHHHhCcCCCCCEEEe-CCCCceEEE------cHHHH
Confidence 34444 5889887766655432 2444555542 2234444455678898754 22 54332 34556
Q ss_pred HHHHHhh
Q 030928 158 IQRIENS 164 (169)
Q Consensus 158 ~~~i~~~ 164 (169)
.++|.+.
T Consensus 72 ~~yL~~~ 78 (81)
T cd03048 72 LLYLAEK 78 (81)
T ss_pred HHHHHHH
Confidence 6666554
No 405
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=24.50 E-value=24 Score=27.29 Aligned_cols=99 Identities=18% Similarity=0.219 Sum_probs=51.0
Q ss_pred ccCChhhHHHHH---hcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEe--CCCc---hhHHHhCCCCCCc
Q 030928 63 KKQTFSSLDDLL---QKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKID--TEKY---PQIADTYRIEALP 134 (169)
Q Consensus 63 ~~~~~~~~~~~~---~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~--~d~~---~~l~~~~~v~~~P 134 (169)
++.+.+.|.+++ .+...-....++.+.|..-..=...+.+++++.. +-++.-+ ..+. .++|++++. |
T Consensus 163 TT~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~aT~~RQ~a~~~La~~vD--~miVIGg~~SsNT~kL~eia~~~~~---~ 237 (281)
T PF02401_consen 163 TTQSVEKFEEIVEALKKRFPELEGPVFNTICYATQNRQEAARELAKEVD--AMIVIGGKNSSNTRKLAEIAKEHGK---P 237 (281)
T ss_dssp TTS-HHHHHHHHHHHHHHSTCEE-SCC-S--CHHHHHHHHHHHHHCCSS--EEEEES-TT-HHHHHHHHHHHHCTT---C
T ss_pred ecccHHHHHHHHHHHHHhCccccCCCCCCCCHhHHHHHHHHHHHHhhCC--EEEEecCCCCccHHHHHHHHHHhCC---C
Confidence 344455555544 3333344445889999988777777777777532 2222111 1111 256667655 6
Q ss_pred EEEEE----------cCCceeeeeeCCCCHHHHHHHHHhhhc
Q 030928 135 TFILF----------KDGKPSDRFEGAFSKDQLIQRIENSLS 166 (169)
Q Consensus 135 t~~~~----------~~g~~~~~~~G~~~~~~l~~~i~~~l~ 166 (169)
++.+- ++.+.+.--.|.-+++.+.+-+.+.|+
T Consensus 238 t~~Ie~~~el~~~~l~~~~~VGItaGASTP~~ii~eVi~~l~ 279 (281)
T PF02401_consen 238 TYHIETADELDPEWLKGVKKVGITAGASTPDWIIEEVIDRLE 279 (281)
T ss_dssp EEEESSGGG--HHHHTT-SEEEEEE-TTS-HHHHHHHHHHHH
T ss_pred EEEeCCccccCHhHhCCCCEEEEEccCCCCHHHHHHHHHHHh
Confidence 76653 233456666788888877777766554
No 406
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=23.98 E-value=1.1e+02 Score=24.29 Aligned_cols=19 Identities=32% Similarity=0.413 Sum_probs=12.1
Q ss_pred EEEEEcCCceeeeeeCCCC
Q 030928 135 TFILFKDGKPSDRFEGAFS 153 (169)
Q Consensus 135 t~~~~~~g~~~~~~~G~~~ 153 (169)
++.+.++|++..+-.|+.+
T Consensus 298 ~v~iiK~GkE~~QGVgYLd 316 (356)
T COG4956 298 TVQIIKDGKEPGQGVGYLD 316 (356)
T ss_pred EEEEeecCcccCCceEEec
Confidence 5667777776655555543
No 407
>KOG3286 consensus Selenoprotein T [General function prediction only]
Probab=23.92 E-value=3.1e+02 Score=20.35 Aligned_cols=80 Identities=14% Similarity=0.083 Sum_probs=53.5
Q ss_pred cEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCc---hhHHHhCCCCCCcEEEEEcCCceeeeeeCCCCHHH
Q 030928 80 PVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKY---PQIADTYRIEALPTFILFKDGKPSDRFEGAFSKDQ 156 (169)
Q Consensus 80 ~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~---~~l~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~ 156 (169)
+++-.+|.-.|++=+.+..+.+-+.++|++ +.+..-|.+.. +=+++-..|-.+=.+.++-.|.....+.|...+.-
T Consensus 70 ptl~i~fCvSCgYk~af~~~~~~l~ekyPg-l~IegaNy~Pp~~kr~lAk~v~v~k~gvIglii~G~~pF~~iGl~~P~i 148 (226)
T KOG3286|consen 70 PTLEINFCVSCGYKQAFEQYKKFLKEKYPG-LDIEGANYPPPAWKRYLAKVVSVVKMGVIGLIIGGKNPFEFIGLGYPSI 148 (226)
T ss_pred CcEEEEEEEecCcHHHHHHHHHHHHhhCCC-ceeecCcCCCchHHHHHHHHHHHHhheeEEEEeccCCccceecCCCcHH
Confidence 667777778899988888777777788886 66655555432 23444445555545666668888888888877665
Q ss_pred HHHH
Q 030928 157 LIQR 160 (169)
Q Consensus 157 l~~~ 160 (169)
+...
T Consensus 149 wqh~ 152 (226)
T KOG3286|consen 149 WQHA 152 (226)
T ss_pred HHHH
Confidence 5443
No 408
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=23.92 E-value=3.8e+02 Score=21.38 Aligned_cols=80 Identities=20% Similarity=0.253 Sum_probs=39.4
Q ss_pred HHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhC-CCCCCcEEEEEcCCceeeeeeCC
Q 030928 73 LLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTY-RIEALPTFILFKDGKPSDRFEGA 151 (169)
Q Consensus 73 ~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~-~v~~~Pt~~~~~~g~~~~~~~G~ 151 (169)
.++...++.+|+|....- |.++++...-..++.+...-. ..++++-.+ ...-.|.+.+|++...-.. ..
T Consensus 148 hlq~Rhq~ffVf~Gtge~-------PL~d~fidAASe~~~~a~FfS-aseeVaPe~~~~kempaV~VFKDetf~i~--de 217 (468)
T KOG4277|consen 148 HLQARHQPFFVFFGTGEG-------PLFDAFIDAASEKFSVARFFS-ASEEVAPEENDAKEMPAVAVFKDETFEIE--DE 217 (468)
T ss_pred HHhhccCceEEEEeCCCC-------cHHHHHHHHhhhheeeeeeec-cccccCCcccchhhccceEEEccceeEEE--ec
Confidence 344567888887775433 333333222222333332221 112233233 3456788889887653322 23
Q ss_pred CCHHHHHHHHH
Q 030928 152 FSKDQLIQRIE 162 (169)
Q Consensus 152 ~~~~~l~~~i~ 162 (169)
.+.+++-.||.
T Consensus 218 ~dd~dLseWin 228 (468)
T KOG4277|consen 218 GDDEDLSEWIN 228 (468)
T ss_pred CchhHHHHHHh
Confidence 44566666664
No 409
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=23.90 E-value=1.5e+02 Score=19.38 Aligned_cols=22 Identities=32% Similarity=0.339 Sum_probs=14.6
Q ss_pred EEcCCChhhhhhhHHHHHHHHH
Q 030928 85 FYATWCGPCQYMAPILNEVGAA 106 (169)
Q Consensus 85 f~~~~C~~C~~~~~~l~~~~~~ 106 (169)
+|.+.-++++.+...+.+-...
T Consensus 4 iy~S~tGnT~~~A~~i~~~~~~ 25 (140)
T TIGR01753 4 VYASMTGNTEEMANIIAEGLKE 25 (140)
T ss_pred EEECCCcHHHHHHHHHHHHHHh
Confidence 4455678888877777665554
No 410
>PRK14451 acylphosphatase; Provisional
Probab=23.29 E-value=1.4e+02 Score=18.59 Aligned_cols=38 Identities=18% Similarity=0.117 Sum_probs=21.4
Q ss_pred hHHHhCCCCCCcEEEEE-cCCceeeeeeCCCCHHHHHHHHHhhh
Q 030928 123 QIADTYRIEALPTFILF-KDGKPSDRFEGAFSKDQLIQRIENSL 165 (169)
Q Consensus 123 ~l~~~~~v~~~Pt~~~~-~~g~~~~~~~G~~~~~~l~~~i~~~l 165 (169)
.++.++|+.|+- -- .+|.+.....| +.+.+.++++.+.
T Consensus 24 ~~A~~~gl~G~V---~N~~dG~Vei~~qG--~~~~i~~f~~~l~ 62 (89)
T PRK14451 24 KLAEQLMISGWA---RNLADGRVEVFACG--KEDKLEEFYTWLQ 62 (89)
T ss_pred HHHHHhCCEEEE---EECCCCCEEEEEEE--CHHHHHHHHHHHh
Confidence 556677776652 22 26665555555 4555666665543
No 411
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=23.29 E-value=3.4e+02 Score=20.69 Aligned_cols=65 Identities=9% Similarity=0.158 Sum_probs=43.7
Q ss_pred hHHHHHHHHHhc-CCeEEEEEeCCCchh-------HHHhCC-CCCCcEEEEEcCCceeeeeeCCCCHHHHHHHHHhhh
Q 030928 97 APILNEVGAALK-DKIQVVKIDTEKYPQ-------IADTYR-IEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENSL 165 (169)
Q Consensus 97 ~~~l~~~~~~~~-~~v~~~~v~~d~~~~-------l~~~~~-v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~~~l 165 (169)
...|++++.+++ +.+....+|+.+... +.++|+ | -+++-+-|-.+.......+.++|+..++--+
T Consensus 40 ~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g~i----DiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni 113 (246)
T COG4221 40 EERLEALADEIGAGAALALALDVTDRAAVEAAIEALPEEFGRI----DILVNNAGLALGDPLDEADLDDWDRMIDTNV 113 (246)
T ss_pred HHHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHHhhCcc----cEEEecCCCCcCChhhhCCHHHHHHHHHHHH
Confidence 567999999998 568888888877643 344555 3 2445456665554455678888888886543
No 412
>PRK14449 acylphosphatase; Provisional
Probab=23.22 E-value=2e+02 Score=17.92 Aligned_cols=39 Identities=21% Similarity=0.112 Sum_probs=20.5
Q ss_pred hHHHhCCCCCCcEEEEEcCCceeeeeeCCCCHHHHHHHHHhhh
Q 030928 123 QIADTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENSL 165 (169)
Q Consensus 123 ~l~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~~~l 165 (169)
.++.++++.|+ +.=..+|.+.....| +.+.+.+|++.+.
T Consensus 24 ~~A~~lgl~G~--V~N~~dG~Vei~~~G--~~~~v~~f~~~l~ 62 (90)
T PRK14449 24 QKAVSLGITGY--AENLYDGSVEVVAEG--DEENIKELINFIK 62 (90)
T ss_pred HHHHHcCCEEE--EEECCCCeEEEEEEe--CHHHHHHHHHHHh
Confidence 45666777665 111235655545555 3455666665543
No 413
>PRK04011 peptide chain release factor 1; Provisional
Probab=22.93 E-value=89 Score=25.63 Aligned_cols=29 Identities=24% Similarity=0.397 Sum_probs=18.7
Q ss_pred HHHHHHhcCCeEEEEEeCCCchhHHHhCC
Q 030928 101 NEVGAALKDKIQVVKIDTEKYPQIADTYR 129 (169)
Q Consensus 101 ~~~~~~~~~~v~~~~v~~d~~~~l~~~~~ 129 (169)
.+.+++++.++.|+.-+.++...+.+.||
T Consensus 373 ~e~a~~~g~~v~iis~~~e~G~qL~~~fG 401 (411)
T PRK04011 373 SELAEQSGTKVEVISTDTEEGEQLLKAFG 401 (411)
T ss_pred HHHHHHcCCEEEEECCCChhHHHHHHcCC
Confidence 34445555567777767777777777765
No 414
>TIGR00597 rad10 DNA repair protein rad10. All proteins in this family for which functions are known are components in a multiprotein endonuclease complex (usually made up of Rad1 and Rad10 homologs). This complex is used primarily for nucleotide excision repair but also for some aspects of recombination repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.76 E-value=1.1e+02 Score=20.23 Aligned_cols=29 Identities=21% Similarity=0.328 Sum_probs=19.6
Q ss_pred HHHHHHHHhcCCeEEEEEeCCCchhHHHh
Q 030928 99 ILNEVGAALKDKIQVVKIDTEKYPQIADT 127 (169)
Q Consensus 99 ~l~~~~~~~~~~v~~~~v~~d~~~~l~~~ 127 (169)
.++++.+.+..++.++.||+++.++.-++
T Consensus 58 Ri~~L~~~~~lrvLL~~VDv~~~~~~L~e 86 (112)
T TIGR00597 58 RLQSLGKNFNLRILLVQVDVKNPQQALKE 86 (112)
T ss_pred HHHHhccccceeEEEEEEeCCchHHHHHH
Confidence 44555555665688889999887654443
No 415
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=22.70 E-value=1.4e+02 Score=22.79 Aligned_cols=43 Identities=14% Similarity=0.428 Sum_probs=26.0
Q ss_pred CCCchhHHHhCCCCCCcEEEEEcCCceeeeeeCCCCHHHHHHHHH
Q 030928 118 TEKYPQIADTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIE 162 (169)
Q Consensus 118 ~d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~ 162 (169)
+|-.++.+++++|.-+|--+.++ |+.... .-..+.+++.+.++
T Consensus 9 ~dl~~~~~~~~~I~vvPl~I~~~-~~~y~D-~~~i~~~~~y~~~~ 51 (275)
T TIGR00762 9 ADLPPELIEEYGITVVPLTVIID-GKTYRD-GVDITPEEFYEKLK 51 (275)
T ss_pred cCCCHHHHHHcCCEEEEEEEEEC-CEEeec-CCCCCHHHHHHHHH
Confidence 34457788999999999877664 432211 11345555555554
No 416
>KOG3360 consensus Acylphosphatase [Energy production and conversion]
Probab=22.52 E-value=1.9e+02 Score=18.59 Aligned_cols=39 Identities=13% Similarity=0.191 Sum_probs=28.7
Q ss_pred hhHHHhCCCCCCcEEEEEcCCceeeeeeCCCC-HHHHHHHHH
Q 030928 122 PQIADTYRIEALPTFILFKDGKPSDRFEGAFS-KDQLIQRIE 162 (169)
Q Consensus 122 ~~l~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~-~~~l~~~i~ 162 (169)
.+.|+++||.|+ +.=-++|.+..++.|... .+.+..||.
T Consensus 28 ~~~a~~lGlrGW--v~Nt~~GtvkG~leGp~~~vd~mk~wl~ 67 (98)
T KOG3360|consen 28 LDEAKKLGLRGW--VMNTSEGTVKGQLEGPPEKVDEMKEWLL 67 (98)
T ss_pred HHHHHhhcceEE--EEecCCceEEEEEeCCHHHHHHHHHHHH
Confidence 356788999886 122258999999999874 477777776
No 417
>PRK11752 putative S-transferase; Provisional
Probab=22.49 E-value=3e+02 Score=20.77 Aligned_cols=56 Identities=13% Similarity=0.102 Sum_probs=35.0
Q ss_pred EEEEEcCCChhhhhhhHHHHHH-HHHhcC-CeEEEEEeCCC----chhHHHhCCCCCCcEEEE
Q 030928 82 LVDFYATWCGPCQYMAPILNEV-GAALKD-KIQVVKIDTEK----YPQIADTYRIEALPTFIL 138 (169)
Q Consensus 82 vv~f~~~~C~~C~~~~~~l~~~-~~~~~~-~v~~~~v~~d~----~~~l~~~~~v~~~Pt~~~ 138 (169)
+.+|+ .+|+.|+++.-.++++ +...++ .+.++.||... .+++.+-.-...+|+++.
T Consensus 45 ~~Ly~-~~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~ 106 (264)
T PRK11752 45 LQLYS-LGTPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLD 106 (264)
T ss_pred eEEec-CCCCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEe
Confidence 44344 5699999998888775 333322 36666777643 234554445678999865
No 418
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=22.46 E-value=1.4e+02 Score=15.78 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=16.9
Q ss_pred EEcCCceeeeeeCCCCHHHHHHHHHhh
Q 030928 138 LFKDGKPSDRFEGAFSKDQLIQRIENS 164 (169)
Q Consensus 138 ~~~~g~~~~~~~G~~~~~~l~~~i~~~ 164 (169)
+.++|+ ..|..+.+++.+.+.+-
T Consensus 4 ~~~~g~----~~GP~s~~el~~l~~~g 26 (45)
T PF14237_consen 4 YARNGQ----QQGPFSLEELRQLISSG 26 (45)
T ss_pred EeCCCe----EECCcCHHHHHHHHHcC
Confidence 334564 57899999999988653
No 419
>PLN02473 glutathione S-transferase
Probab=22.40 E-value=3e+02 Score=19.63 Aligned_cols=59 Identities=15% Similarity=0.135 Sum_probs=34.9
Q ss_pred EEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCC----chhHHHhCCCCCCcEEEEEcCCcee
Q 030928 81 VLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEK----YPQIADTYRIEALPTFILFKDGKPS 145 (169)
Q Consensus 81 vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~----~~~l~~~~~v~~~Pt~~~~~~g~~~ 145 (169)
|+-+++.+.|+.|++..-.+++..- .+.++.+|..+ .++.....-...+|++. .+|..+
T Consensus 2 ~~kLy~~~~s~~~~rv~~~L~e~gi----~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~--~~g~~l 64 (214)
T PLN02473 2 VVKVYGQIKAANPQRVLLCFLEKGI----EFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIE--DGDLKL 64 (214)
T ss_pred ceEEecCCCCCchHHHHHHHHHcCC----CceEEEecCcccccCCHHHHhhCCCCCCCeEE--ECCEEE
Confidence 3445666778888887755544322 25556666543 34444445577899985 366543
No 420
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=22.17 E-value=2.2e+02 Score=22.09 Aligned_cols=100 Identities=17% Similarity=0.167 Sum_probs=55.4
Q ss_pred ccCChhhHHHHHhc--CCCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCch---hHHHhCCCCCCcEEE
Q 030928 63 KKQTFSSLDDLLQK--SDKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYP---QIADTYRIEALPTFI 137 (169)
Q Consensus 63 ~~~~~~~~~~~~~~--~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~---~l~~~~~v~~~Pt~~ 137 (169)
++.+.+.|.+++.. ..-+-+ .+..+.|..-..=.....+++++..--+.++.-+..+.. ++|++++ .|++.
T Consensus 165 TT~~~~~~~~iv~~l~~~~~~~-~v~~TIC~aT~~RQ~a~~~La~~vD~miVVGg~~SsNT~rL~eia~~~~---~~t~~ 240 (281)
T PRK12360 165 TTIIPELWEDILNVIKLKSKEL-VFFNTICSATKKRQESAKELSKEVDVMIVIGGKHSSNTQKLVKICEKNC---PNTFH 240 (281)
T ss_pred CCCcHHHHHHHHHHHHHhCccc-ccCCCcchhhhhHHHHHHHHHHhCCEEEEecCCCCccHHHHHHHHHHHC---CCEEE
Confidence 44455566655432 112222 346889988887777888888764321222233333333 4566664 56666
Q ss_pred EEc----------CCceeeeeeCCCCHHHHHHHHHhhhc
Q 030928 138 LFK----------DGKPSDRFEGAFSKDQLIQRIENSLS 166 (169)
Q Consensus 138 ~~~----------~g~~~~~~~G~~~~~~l~~~i~~~l~ 166 (169)
+-. +-+.+..-.|.-+++.+.+-+.+.|+
T Consensus 241 Ie~~~el~~~~~~~~~~VGitaGASTP~~li~eV~~~l~ 279 (281)
T PRK12360 241 IETADELDLEMLKDYKIIGITAGASTPDWIIEEVIKKIK 279 (281)
T ss_pred ECChHHCCHHHhCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 532 22345556677777776666655543
No 421
>COG2957 Peptidylarginine deiminase and related enzymes [Amino acid transport and metabolism]
Probab=22.14 E-value=4.1e+02 Score=21.19 Aligned_cols=73 Identities=14% Similarity=0.108 Sum_probs=39.1
Q ss_pred hhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCCCCcEEE--EEcCCceeeeeeCCCCHHHHHHHHHhhhcc
Q 030928 93 CQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIEALPTFI--LFKDGKPSDRFEGAFSKDQLIQRIENSLSV 167 (169)
Q Consensus 93 C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~~~Pt~~--~~~~g~~~~~~~G~~~~~~l~~~i~~~l~~ 167 (169)
|+++...|+++...-+..+.+..+.+... +..+-+-+-.++++ ++-||-++.-..+..+.....+.|+++...
T Consensus 244 ~q~~~~~L~~~~d~~G~~~~l~~Lp~P~~--~~~e~~~rL~aSY~NFlI~N~avIvP~y~D~~D~~a~~~L~~~fP~ 318 (346)
T COG2957 244 LQAMLEELKELRDAKGRPLKLHKLPIPKP--VTDEDGERLPASYVNFLIINGAVIVPQYDDPNDALALDVLQQAFPG 318 (346)
T ss_pred HHHHHHHHHhccccCCCeeEEEEcCCCcc--cccccCCCCcccceeEEEecCeEEeeccCCcchHHHHHHHHHhCCC
Confidence 33333333333333223466666665421 12221333223322 334777777778888888888888888764
No 422
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=22.01 E-value=21 Score=18.68 Aligned_cols=11 Identities=9% Similarity=0.365 Sum_probs=8.1
Q ss_pred CCHHHHHHHHH
Q 030928 152 FSKDQLIQRIE 162 (169)
Q Consensus 152 ~~~~~l~~~i~ 162 (169)
.+.+++.+|++
T Consensus 38 ~~~~~l~~~~~ 48 (49)
T TIGR01764 38 IPREDVDEYLE 48 (49)
T ss_pred EeHHHHHHHHh
Confidence 36788888875
No 423
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=21.81 E-value=43 Score=25.36 Aligned_cols=51 Identities=8% Similarity=0.074 Sum_probs=35.7
Q ss_pred CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchhHHHhCCCC
Q 030928 78 DKPVLVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQIADTYRIE 131 (169)
Q Consensus 78 ~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~l~~~~~v~ 131 (169)
+++++ -+.+.|+.++.++..++++..+.+. ..+..++.++-+++..+||+.
T Consensus 221 g~pv~--~~~p~s~~a~~~~~la~ell~~~~~-~~~~~~~~~~~~~~~~~~~~~ 271 (275)
T TIGR01287 221 KMTVI--EYDPESEQANEYRELAKKIYENTEF-VIPTPLTMDELEEILMKFGIM 271 (275)
T ss_pred CCceE--EeCCCCHHHHHHHHHHHHHHhcCCC-CCCCCCCHHHHHHHHHHHHHh
Confidence 45553 3468888888888888877765432 555667777778888888864
No 424
>PRK14430 acylphosphatase; Provisional
Probab=21.37 E-value=1.9e+02 Score=18.20 Aligned_cols=39 Identities=18% Similarity=0.029 Sum_probs=22.8
Q ss_pred hhHHHhCCCCCCcEEEEEcCCceeeeeeCCCCHHHHHHHHHhh
Q 030928 122 PQIADTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENS 164 (169)
Q Consensus 122 ~~l~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~~~ 164 (169)
..++.++|+.|+-. =..+|.+.....| +.+.+.++++.+
T Consensus 24 ~~~A~~lgl~G~Vr--N~~dGsVei~~qG--~~~~i~~f~~~l 62 (92)
T PRK14430 24 ADAADDLGLGGWVR--NRADGTVEVMASG--TVRQLEALRAWM 62 (92)
T ss_pred HHHHHHhCCEEEEE--ECCCCcEEEEEEc--CHHHHHHHHHHH
Confidence 35677788777631 1136766555566 456666666554
No 425
>PRK14420 acylphosphatase; Provisional
Probab=21.34 E-value=2.2e+02 Score=17.70 Aligned_cols=39 Identities=18% Similarity=0.118 Sum_probs=23.6
Q ss_pred hHHHhCCCCCCcEEEEEcCCceeeeeeCCCCHHHHHHHHHhhh
Q 030928 123 QIADTYRIEALPTFILFKDGKPSDRFEGAFSKDQLIQRIENSL 165 (169)
Q Consensus 123 ~l~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~~~l 165 (169)
.++.++|+.|+- .=..+|.+.....|. .+.+++|++.+.
T Consensus 23 ~~A~~~gl~G~V--~N~~dG~Vei~~qG~--~~~i~~f~~~l~ 61 (91)
T PRK14420 23 MEADKRKLTGWV--KNRDDGTVEIEAEGP--EEALQLFLDAIE 61 (91)
T ss_pred HHHHHcCCEEEE--EECCCCcEEEEEEEC--HHHHHHHHHHHH
Confidence 567778887761 111367666666664 466777666554
No 426
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the basal transcription machinery. Yet, in contrast to TBPs, TLFs seem not to interact with the TATA-box and even have a negative effect on the transcription of TATA-containing promoters. Recent results indicate that TLFs are involved in the transcription via TATA-less promoters.
Probab=21.27 E-value=1.8e+02 Score=20.71 Aligned_cols=30 Identities=23% Similarity=0.399 Sum_probs=23.5
Q ss_pred EEEEEcCCceeeeeeCCCCHHHHHHHHHhhhc
Q 030928 135 TFILFKDGKPSDRFEGAFSKDQLIQRIENSLS 166 (169)
Q Consensus 135 t~~~~~~g~~~~~~~G~~~~~~l~~~i~~~l~ 166 (169)
++.+|..|+++ ..|..+.+++.+.++.+++
T Consensus 141 t~lIF~sGkiv--itGaks~~~~~~a~~~i~p 170 (174)
T cd04517 141 TLSIFSTGSVT--VTGARSMEDVREAVEKIYP 170 (174)
T ss_pred EEEEeCCCEEE--EEecCCHHHHHHHHHHHHH
Confidence 56677788764 5789999999999888764
No 427
>PF02042 RWP-RK: RWP-RK domain; InterPro: IPR003035 This domain is named RWP-RK after a conserved motif at the C terminus of the domain. The domain is found in algal minus dominance proteins as well as plant proteins involved in nitrogen-controlled development [].
Probab=21.08 E-value=79 Score=17.80 Aligned_cols=15 Identities=13% Similarity=0.122 Sum_probs=12.6
Q ss_pred chhHHHhCCCCCCcE
Q 030928 121 YPQIADTYRIEALPT 135 (169)
Q Consensus 121 ~~~l~~~~~v~~~Pt 135 (169)
-...|+++||..+|.
T Consensus 32 LKr~CR~~GI~RWP~ 46 (52)
T PF02042_consen 32 LKRRCRRLGIPRWPY 46 (52)
T ss_pred HHHHHHHcCCCCCCc
Confidence 467899999999995
No 428
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=20.96 E-value=1.3e+02 Score=22.95 Aligned_cols=42 Identities=21% Similarity=0.475 Sum_probs=25.2
Q ss_pred CCchhHHHhCCCCCCcEEEEEcCCceeeeeeC-CCCHHHHHHHHHh
Q 030928 119 EKYPQIADTYRIEALPTFILFKDGKPSDRFEG-AFSKDQLIQRIEN 163 (169)
Q Consensus 119 d~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~G-~~~~~~l~~~i~~ 163 (169)
|-.+++.++++|.-+|-.+.+++ +. ...| ..+.+++.+.+++
T Consensus 11 dl~~~~~~~~~i~vvPl~i~~~~-~~--y~D~~~i~~~efy~~l~~ 53 (280)
T PF02645_consen 11 DLPPELAEEYGIYVVPLNIIIDG-KE--YRDGVDISPEEFYEKLRE 53 (280)
T ss_dssp ---HHHHHHTTEEEE--EEEETT-EE--EETTTTSCHHHHHHHHHH
T ss_pred CCCHHHHHhCCeEEEeEEEecCC-eE--EecCCCCCHHHHHHHHHh
Confidence 44568889999999998777754 32 1223 6677777777743
No 429
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=20.79 E-value=2e+02 Score=19.96 Aligned_cols=72 Identities=11% Similarity=0.222 Sum_probs=38.9
Q ss_pred EEEEEcCCChhhhhhhHHHHHHHHHhcCCeEEEEEeCCCchh----------HHHhCCCCCCcEEEEEcCCceeeeeeCC
Q 030928 82 LVDFYATWCGPCQYMAPILNEVGAALKDKIQVVKIDTEKYPQ----------IADTYRIEALPTFILFKDGKPSDRFEGA 151 (169)
Q Consensus 82 vv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~d~~~~----------l~~~~~v~~~Pt~~~~~~g~~~~~~~G~ 151 (169)
-+.+| .++.+..+.+.|+.+.... ...++.||..+... +.....+...|.+++..... ..+.
T Consensus 59 ~~~~~--d~gG~~~~~~~w~~y~~~~--~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D----~~~~ 130 (175)
T PF00025_consen 59 SLTIW--DLGGQESFRPLWKSYFQNA--DGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQD----LPDA 130 (175)
T ss_dssp EEEEE--EESSSGGGGGGGGGGHTTE--SEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTT----STTS
T ss_pred EEEEE--eccccccccccceeecccc--ceeEEEEecccceeecccccchhhhcchhhcccceEEEEecccc----ccCc
Confidence 34555 4445556677776665543 24566678765432 12223466788877764221 1244
Q ss_pred CCHHHHHHHH
Q 030928 152 FSKDQLIQRI 161 (169)
Q Consensus 152 ~~~~~l~~~i 161 (169)
.+.+++...+
T Consensus 131 ~~~~~i~~~l 140 (175)
T PF00025_consen 131 MSEEEIKEYL 140 (175)
T ss_dssp STHHHHHHHT
T ss_pred chhhHHHhhh
Confidence 5666666554
No 430
>PF06999 Suc_Fer-like: Sucrase/ferredoxin-like; InterPro: IPR009737 This family contains a number of bacterial and eukaryotic proteins approximately 400 residues long that resemble ferredoxin and appear to have sucrolytic activity [].
Probab=20.75 E-value=1.8e+02 Score=21.43 Aligned_cols=41 Identities=12% Similarity=0.217 Sum_probs=29.8
Q ss_pred hCCCCCC-cEEEEEcCCceeeeeeCCCCHHHHHHHHHh-hhcc
Q 030928 127 TYRIEAL-PTFILFKDGKPSDRFEGAFSKDQLIQRIEN-SLSV 167 (169)
Q Consensus 127 ~~~v~~~-Pt~~~~~~g~~~~~~~G~~~~~~l~~~i~~-~l~~ 167 (169)
..|-..+ |++++|..++.-..+.|..+.+++...+++ +.+.
T Consensus 177 HiGGHkfAgNvIiy~~~~p~g~wyGrv~p~~v~~iv~~t~~~g 219 (230)
T PF06999_consen 177 HIGGHKFAGNVIIYSKPKPDGIWYGRVTPEDVEGIVDATILDG 219 (230)
T ss_pred ccccceecCeEEEEecCCCcEEEEEeeCHHHHHHHHHHHHhCC
Confidence 3443433 888888444556678999999999999999 5554
No 431
>PF06122 TraH: Conjugative relaxosome accessory transposon protein; InterPro: IPR010927 Six Tra proteins encoded by the F plasmid and required by F(+) cells to elaborate F pili. The six proteins are TraH, TraF, TraW, TraU, TrbI, and TrbB. Except for TrbI, these proteins were all identified as hallmarks of F-like type IV secretion systems (TFSSs), with no homologues among TFSS genes of P-type or I-type systems. With the exception of TrbI, which is an inner membrane protein, the remaining proteins are or are predicted to be periplasmic. TrbI consists of one membrane-spanning segment near its N terminus and an 88-residue, hydrophilic domain that extends into the periplasm []. It has been proposed that the TraH interaction group is to control F-pilus extension and retraction during conjugation [, , ].
Probab=20.67 E-value=75 Score=25.49 Aligned_cols=52 Identities=15% Similarity=0.138 Sum_probs=33.1
Q ss_pred cceecccCChhhHHHHHhcC----CCcEEEEEEcCCChhhhhhhHHHHHHHHHhcC
Q 030928 58 PVVEAKKQTFSSLDDLLQKS----DKPVLVDFYATWCGPCQYMAPILNEVGAALKD 109 (169)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~----~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~~ 109 (169)
-...+.-++.++|.+.+++- ....+=+=-..+||.|...+..|+++++++.+
T Consensus 61 f~GsFSfIn~dqlVq~lr~Ia~nA~gyAF~LAL~t~~p~~~~~~~~lq~~~~~lN~ 116 (361)
T PF06122_consen 61 FMGSFSFINSDQLVQMLRNIASNAPGYAFQLALQTLCPQCGNIMDKLQKIAQALNQ 116 (361)
T ss_pred cccccccCCHHHHHHHHHHHHHhhHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHh
Confidence 33445566777776665432 11111111157999999999999999988764
No 432
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=20.54 E-value=93 Score=23.57 Aligned_cols=37 Identities=19% Similarity=0.377 Sum_probs=27.1
Q ss_pred hHHHHHhcCCCcEEEEEEcCCChhhhhhhHH--HHHHHH
Q 030928 69 SLDDLLQKSDKPVLVDFYATWCGPCQYMAPI--LNEVGA 105 (169)
Q Consensus 69 ~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~--l~~~~~ 105 (169)
.|..+..+...+.+|-+-..-|+.|+...|. +..+.+
T Consensus 179 ~yeri~~~~kg~gvvpl~g~~C~GC~m~l~~~~~~~V~~ 217 (239)
T COG1579 179 EYERIRKNKKGVGVVPLEGRVCGGCHMKLPSQTLSKVRK 217 (239)
T ss_pred HHHHHHhcCCCceEEeecCCcccCCeeeecHHHHHHHhc
Confidence 4555555555789999999999999998883 344444
No 433
>PF07351 DUF1480: Protein of unknown function (DUF1480); InterPro: IPR009950 This family consists of several hypothetical Enterobacterial proteins of around 80 residues in length. The function of this family is unknown.
Probab=20.50 E-value=1.1e+02 Score=18.80 Aligned_cols=37 Identities=22% Similarity=0.416 Sum_probs=25.7
Q ss_pred eEEEEEeCCCchhHHHhCC----CCCCcEEEEEcCCceeeeeeC
Q 030928 111 IQVVKIDTEKYPQIADTYR----IEALPTFILFKDGKPSDRFEG 150 (169)
Q Consensus 111 v~~~~v~~d~~~~l~~~~~----v~~~Pt~~~~~~g~~~~~~~G 150 (169)
...+.|.|..++++|.++. -.++|.++ +|+.+.-|.+
T Consensus 26 ~~tlsIPCksdpdlcmQLDgWDe~TSiPA~l---dgk~~lLyr~ 66 (80)
T PF07351_consen 26 EDTLSIPCKSDPDLCMQLDGWDEHTSIPAIL---DGKPSLLYRQ 66 (80)
T ss_pred CCeEEeecCCChhheeEecccccCCccceEE---CCceeeeeeh
Confidence 5667888999999998875 45888754 5655444433
No 434
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=20.12 E-value=2.7e+02 Score=19.27 Aligned_cols=39 Identities=13% Similarity=0.201 Sum_probs=25.3
Q ss_pred hhHHHHHhcCCCcEEEEEEcCCChhhhhhhHHHHHHHHHhc
Q 030928 68 SSLDDLLQKSDKPVLVDFYATWCGPCQYMAPILNEVGAALK 108 (169)
Q Consensus 68 ~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~~~~~~~ 108 (169)
+.+.+++.+. +|-+|...+ +...|+.+...+.++..+..
T Consensus 53 ~~l~~~i~~~-kP~vI~v~g-~~~~s~~l~~~v~~~v~~~~ 91 (150)
T PF14639_consen 53 ERLKKFIEKH-KPDVIAVGG-NSRESRKLYDDVRDIVEELD 91 (150)
T ss_dssp HHHHHHHHHH---SEEEE---SSTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHc-CCeEEEEcC-CChhHHHHHHHHHHHHHHhh
Confidence 3455676554 455555554 78999999999988887764
No 435
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=20.01 E-value=1.8e+02 Score=20.15 Aligned_cols=17 Identities=18% Similarity=0.362 Sum_probs=14.1
Q ss_pred hhHHHhCCCCCCcEEEE
Q 030928 122 PQIADTYRIEALPTFIL 138 (169)
Q Consensus 122 ~~l~~~~~v~~~Pt~~~ 138 (169)
.++++++++..||.++-
T Consensus 121 ddLA~rL~l~HYPvLIt 137 (142)
T PF11072_consen 121 DDLARRLGLSHYPVLIT 137 (142)
T ss_pred HHHHHHhCCCcccEEee
Confidence 47899999999998653
Done!