BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030929
(169 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TFJ|A Chain A, Crystal Structure Of Bovine Glycolipid Transfer Protein In
Complex With A Fatty Acid
Length = 219
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 8/120 (6%)
Query: 31 VELAAFSRACSYVSPLFGCLG-IAFKFAEMDY---VAKVDDLAEASKSIL-TLQSV--ID 83
+E F A S++ P F CLG F + D + K+ + + + + TLQ++ ++
Sbjct: 28 IETGPFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPTKFRTLQNILEVE 87
Query: 84 RDIEGNCVRKAGSHTRNLLRVKRGLDMVRVLFEQILAAEYVYQHGKFLKGSSIQGLHTSI 143
+++ G K G+ T L+ +KRGL ++V + I E H ++ ++ + ++
Sbjct: 88 KEMYGAEWPKVGA-TLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNATKAYEMAL 146
>pdb|2BV7|A Chain A, Crystal Structure Of Gltp With Bound Gm3
Length = 208
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 8/120 (6%)
Query: 31 VELAAFSRACSYVSPLFGCLG-IAFKFAEMDY---VAKVDDLAEASKSIL-TLQSV--ID 83
+E F A S++ P F CLG F + D + K+ + + + + TLQ++ ++
Sbjct: 17 IETGPFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPTKFRTLQNILEVE 76
Query: 84 RDIEGNCVRKAGSHTRNLLRVKRGLDMVRVLFEQILAAEYVYQHGKFLKGSSIQGLHTSI 143
+++ G K G+ T L+ +KRGL ++V + I E H ++ ++ + ++
Sbjct: 77 KEMYGAEWPKVGA-TLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNATKAYEMAL 135
>pdb|1WBE|A Chain A, X-Ray Structure Of Bovine Gltp
Length = 209
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 8/120 (6%)
Query: 31 VELAAFSRACSYVSPLFGCLG-IAFKFAEMDY---VAKVDDLAEASKSIL-TLQSV--ID 83
+E F A S++ P F CLG F + D + K+ + + + + TLQ++ ++
Sbjct: 18 IETGPFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPTKFRTLQNILEVE 77
Query: 84 RDIEGNCVRKAGSHTRNLLRVKRGLDMVRVLFEQILAAEYVYQHGKFLKGSSIQGLHTSI 143
+++ G K G+ T L+ +KRGL ++V + I E H ++ ++ + ++
Sbjct: 78 KEMYGAEWPKVGA-TLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNATKAYEMAL 136
>pdb|1SWX|A Chain A, Crystal Structure Of A Human Glycolipid Transfer Protein
In Apo-Form
pdb|1SX6|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein In
Lactosylceramide-Bound Form
pdb|2EUK|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein
Complexed With 24:1 Galactosylceramide
pdb|2EUM|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein
Complexed With 8:0 Lactosylceramide
pdb|2EVD|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein
Complexed With 12:0 Lactosylceramide
pdb|2EVL|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein
Complexed With 18:2 Galactosylceramide
pdb|2EVS|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein
Complexed With N-Hexyl-Beta-D-Glucoside
pdb|2EVS|E Chain E, Crystal Structure Of Human Glycolipid Transfer Protein
Complexed With N-Hexyl-Beta-D-Glucoside
pdb|3RWV|A Chain A, Crystal Structure Of Apo-Form Of Human Glycolipid Transfer
Protein At 1.5 A Resolution
pdb|3RWV|B Chain B, Crystal Structure Of Apo-Form Of Human Glycolipid Transfer
Protein At 1.5 A Resolution
pdb|3RZN|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein
Complexed With 3-O-Sulfo-Galactosylceramide Containing
Nervonoyl Acyl Chain (24:1)
pdb|3S0K|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein
Complexed With Glucosylceramide Containing Oleoyl Acyl
Chain (18:1)
Length = 209
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 8/120 (6%)
Query: 31 VELAAFSRACSYVSPLFGCLG-IAFKFAEMDY---VAKVDDLAEASKSIL-TLQSV--ID 83
+E F A S++ P F CLG F + D + K+ + + + + TLQ++ ++
Sbjct: 18 IETGPFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPAKFRTLQNILEVE 77
Query: 84 RDIEGNCVRKAGSHTRNLLRVKRGLDMVRVLFEQILAAEYVYQHGKFLKGSSIQGLHTSI 143
+++ G K G+ T L+ +KRGL ++V + I E H ++ ++ + ++
Sbjct: 78 KEMYGAEWPKVGA-TLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNATKAYEMAL 136
>pdb|2EVT|A Chain A, Crystal Structure Of D48v Mutant Of Human Glycolipid
Transfer Protein
pdb|3S0I|A Chain A, Crystal Structure Of D48v Mutant Of Human Glycolipid
Transfer Protein Complexed With 3-O-Sulfo
Galactosylceramide Containing Nervonoyl Acyl Chain
Length = 209
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 8/121 (6%)
Query: 30 DVELAAFSRACSYVSPLFGCLG----IAFKFAEMDYVAKVDDLAEASKSIL-TLQSV--I 82
+E F A S++ P F CLG K + K+ + + + + TLQ++ +
Sbjct: 17 QIETGPFLEAVSHLPPFFDCLGSPVFTPIKAVISGNITKIKAVYDTNPAKFRTLQNILEV 76
Query: 83 DRDIEGNCVRKAGSHTRNLLRVKRGLDMVRVLFEQILAAEYVYQHGKFLKGSSIQGLHTS 142
++++ G K G+ T L+ +KRGL ++V + I E H ++ ++ + +
Sbjct: 77 EKEMYGAEWPKVGA-TLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNATKAYEMA 135
Query: 143 I 143
+
Sbjct: 136 L 136
>pdb|3RIC|A Chain A, Crystal Structure Of D48v||a47d Mutant Of Human Glycolipid
Transfer Protein Complexed With
3-O-Sulfo-Galactosylceramide Containing Nervonoyl Acyl
Chain (24:1)
Length = 209
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 8/120 (6%)
Query: 31 VELAAFSRACSYVSPLFGCLGIAFKFAEMDYVA----KVDDLAEASKSIL-TLQSV--ID 83
+E F A S++ P F CLG D ++ K+ + + + + TLQ++ ++
Sbjct: 18 IETGPFLEAVSHLPPFFDCLGSPVFTPIKDVISGNITKIKAVYDTNPAKFRTLQNILEVE 77
Query: 84 RDIEGNCVRKAGSHTRNLLRVKRGLDMVRVLFEQILAAEYVYQHGKFLKGSSIQGLHTSI 143
+++ G K G+ T L+ +KRGL ++V + I E H ++ ++ + ++
Sbjct: 78 KEMYGAEWPKVGA-TLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNATKAYEMAL 136
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 48 GCLGIAFKFAEMDY----VAKVDDLAEASKSILTLQSVIDRDIEGNCVRKAGSHTRNLLR 103
G +GI+ +E D AK D+ E K + T+QSV RDIEG L
Sbjct: 1 GAMGISLGNSEADRQLLEAAKAGDV-ETVKKLCTVQSVNCRDIEGR--------QSTPLH 51
Query: 104 VKRGLDMVRVLFEQILAAEYVYQHGKFLKGSSIQGL 139
G + V V+ EY+ QHG + GL
Sbjct: 52 FAAGYNRVSVV-------EYLLQHGADVHAKDKGGL 80
>pdb|1OLZ|A Chain A, The Ligand-Binding Face Of The Semaphorins Revealed By The
High Resolution Crystal Structure Of Sema4d
pdb|1OLZ|B Chain B, The Ligand-Binding Face Of The Semaphorins Revealed By The
High Resolution Crystal Structure Of Sema4d
pdb|3OL2|A Chain A, Receptor-Ligand Structure Of Human Semaphorin 4d With
Plexin B1
Length = 663
Score = 26.6 bits (57), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 5/31 (16%)
Query: 121 AEYVYQHGKFLKGSSIQGLHTSICSPSWMGY 151
AE V+ HGK+++ ++++ HT W+ Y
Sbjct: 312 AEEVFSHGKYMQSTTVEQSHT-----KWVRY 337
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,476,249
Number of Sequences: 62578
Number of extensions: 149176
Number of successful extensions: 293
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 290
Number of HSP's gapped (non-prelim): 12
length of query: 169
length of database: 14,973,337
effective HSP length: 92
effective length of query: 77
effective length of database: 9,216,161
effective search space: 709644397
effective search space used: 709644397
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)