Your job contains 1 sequence.
>030930
MVQTLAMPVAPALSVICNGHNNNLLTNASLSFPVSKQPQYPGLSIQCARVGGVEIPNNKR
IEYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITIRDEVSKYMIEGDLRRFNAL
AIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 030930
(169 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2145618 - symbol:EMB3137 "EMBRYO DEFECTIVE 313... 679 8.2e-67 1
UNIPROTKB|Q0DPA4 - symbol:Os03g0704000 "Os03g0704000 prot... 394 1.3e-36 1
UNIPROTKB|A8JDP6 - symbol:PRPS13 "Plastid ribosomal prote... 357 1.1e-32 1
TAIR|locus:2203216 - symbol:AT1G77750 species:3702 "Arabi... 349 7.7e-32 1
UNIPROTKB|P20282 - symbol:rpsM "30S ribosomal protein S13... 313 5.0e-28 1
TIGR_CMR|BA_0135 - symbol:BA_0135 "ribosomal protein S13"... 303 5.7e-27 1
UNIPROTKB|O66486 - symbol:rpsM "30S ribosomal protein S13... 301 9.4e-27 1
TIGR_CMR|CHY_2284 - symbol:CHY_2284 "ribosomal protein S1... 301 9.4e-27 1
UNIPROTKB|Q749B0 - symbol:rpsM "30S ribosomal protein S13... 300 1.2e-26 1
TIGR_CMR|GSU_2834 - symbol:GSU_2834 "ribosomal protein S1... 300 1.2e-26 1
UNIPROTKB|O06327 - symbol:rpsM "30S ribosomal protein S13... 299 1.5e-26 1
UNIPROTKB|Q89JA6 - symbol:rpsM "30S ribosomal protein S13... 297 2.5e-26 1
UNIPROTKB|Q7NFF2 - symbol:rpsM "30S ribosomal protein S13... 293 6.6e-26 1
UNIPROTKB|Q9RSJ9 - symbol:rpsM "30S ribosomal protein S13... 292 8.4e-26 1
UNIPROTKB|A9WH90 - symbol:rpsM "30S ribosomal protein S13... 290 1.4e-25 1
UNIPROTKB|O86773 - symbol:rpsM "30S ribosomal protein S13... 285 4.6e-25 1
UNIPROTKB|Q8A499 - symbol:rpsM "30S ribosomal protein S13... 278 2.6e-24 1
UNIPROTKB|P0A7S9 - symbol:rpsM species:83333 "Escherichia... 277 3.3e-24 1
UNIPROTKB|A6UZL0 - symbol:rpsM "30S ribosomal protein S13... 276 4.2e-24 1
TIGR_CMR|SO_0253 - symbol:SO_0253 "ribosomal protein S13"... 276 4.2e-24 1
TIGR_CMR|CJE_1764 - symbol:CJE_1764 "ribosomal protein S1... 275 5.3e-24 1
UNIPROTKB|Q9KP05 - symbol:rpsM "30S ribosomal protein S13... 274 6.8e-24 1
TIGR_CMR|VC_2574 - symbol:VC_2574 "ribosomal protein S13"... 274 6.8e-24 1
TIGR_CMR|DET_0499 - symbol:DET_0499 "ribosomal protein S1... 271 1.4e-23 1
TIGR_CMR|SPO_0509 - symbol:SPO_0509 "ribosomal protein S1... 267 3.8e-23 1
TIGR_CMR|CBU_0260 - symbol:CBU_0260 "ribosomal protein S1... 265 6.1e-23 1
TIGR_CMR|ECH_0430 - symbol:ECH_0430 "ribosomal protein S1... 260 2.1e-22 1
UNIPROTKB|Q9X1I5 - symbol:rpsM "30S ribosomal protein S13... 256 5.5e-22 1
UNIPROTKB|Q9XD12 - symbol:rpsM "30S ribosomal protein S13... 247 4.9e-21 1
TIGR_CMR|APH_0301 - symbol:APH_0301 "ribosomal protein S1... 242 1.7e-20 1
UNIPROTKB|Q3KLI8 - symbol:rpsM "30S ribosomal protein S13... 241 2.1e-20 1
TIGR_CMR|CPS_0623 - symbol:CPS_0623 "ribosomal protein S1... 241 2.1e-20 1
TIGR_CMR|NSE_0287 - symbol:NSE_0287 "ribosomal protein S1... 233 1.5e-19 1
POMBASE|SPCC1795.07 - symbol:SPCC1795.07 "mitochondrial r... 203 2.3e-16 1
ASPGD|ASPL0000076821 - symbol:AN4468 species:162425 "Emer... 153 4.5e-11 1
UNIPROTKB|Q3T0R1 - symbol:RPS18 "40S ribosomal protein S1... 105 2.0e-10 2
UNIPROTKB|Q5TJE9 - symbol:RPS18 "40S ribosomal protein S1... 105 2.0e-10 2
UNIPROTKB|P62269 - symbol:RPS18 "40S ribosomal protein S1... 105 2.0e-10 2
UNIPROTKB|P62272 - symbol:RPS18 "40S ribosomal protein S1... 105 2.0e-10 2
MGI|MGI:98146 - symbol:Rps18 "ribosomal protein S18" spec... 105 2.0e-10 2
RGD|3595 - symbol:Rps18 "ribosomal protein S18" species:1... 105 2.0e-10 2
WB|WBGene00004487 - symbol:rps-18 species:6239 "Caenorhab... 104 2.4e-10 2
UNIPROTKB|O18240 - symbol:rps-18 "Protein RPS-18" species... 104 2.4e-10 2
UNIPROTKB|Q90YQ5 - symbol:rps18 "40S ribosomal protein S1... 105 2.6e-10 2
ZFIN|ZDB-GENE-020419-20 - symbol:rps18 "ribosomal protein... 105 2.6e-10 2
UNIPROTKB|Q7S2C2 - symbol:NCU09539 "Putative uncharacteri... 145 3.2e-10 1
UNIPROTKB|Q8HCP0 - symbol:rps13 "Ribosomal protein S13" s... 145 3.2e-10 1
UNIPROTKB|A7KIL2 - symbol:RPS18 "Ribosomal protein S18" s... 105 4.2e-10 2
RGD|2318487 - symbol:LOC100362298 "ribosomal protein S18-... 102 1.1e-09 2
SGD|S000005025 - symbol:SWS2 "Putative mitochondrial ribo... 139 1.4e-09 1
UNIPROTKB|Q5B4R2 - symbol:AN4468.2 "Putative uncharacteri... 137 2.2e-09 1
UNIPROTKB|Q7R7S0 - symbol:PY07508 "Ribosomal protein S13/... 112 3.4e-09 2
UNIPROTKB|G4MNZ8 - symbol:MGG_05661 "40S ribosomal protei... 104 4.3e-09 2
UNIPROTKB|Q7RXX0 - symbol:NCU00475 "40S ribosomal protein... 104 1.1e-08 2
ASPGD|ASPL0000026438 - symbol:AN5441 species:162425 "Emer... 103 1.2e-08 2
UNIPROTKB|Q5B1Y9 - symbol:AN5441.2 "Ribosomal protein S13... 103 1.2e-08 2
DICTYBASE|DDB_G0276415 - symbol:rps18 "40S ribosomal prot... 98 4.4e-08 2
UNIPROTKB|P95986 - symbol:rps13 "30S ribosomal protein S1... 91 9.6e-08 2
POMBASE|SPBC16D10.11c - symbol:rps1801 "40S ribosomal pro... 103 1.0e-07 2
POMBASE|SPCC1259.01c - symbol:rps1802 "40S ribosomal prot... 103 1.0e-07 2
CGD|CAL0002110 - symbol:orf19.6406 species:5476 "Candida ... 120 1.4e-07 1
UNIPROTKB|Q2F922 - symbol:rps13 "Ribosomal protein S13" s... 120 1.4e-07 1
UNIPROTKB|Q2F974 - symbol:rps13 "Ribosomal protein S13" s... 120 1.4e-07 1
GENEDB_PFALCIPARUM|PF11_0272 - symbol:PF11_0272 "ribosoma... 107 1.5e-07 2
FB|FBgn0010411 - symbol:RpS18 "Ribosomal protein S18" spe... 103 1.7e-07 2
UNIPROTKB|A8HVP2 - symbol:RPS18 "Ribosomal protein S18" s... 105 1.9e-07 2
UNIPROTKB|Q756F0 - symbol:AER315C "AER315Cp" species:2848... 93 2.0e-07 2
RGD|1561919 - symbol:RGD1561919 "similar to ribosomal pro... 98 2.4e-07 2
TAIR|locus:2199670 - symbol:PFL "POINTED FIRST LEAVES" sp... 101 2.5e-07 2
TAIR|locus:2009066 - symbol:AT1G34030 species:3702 "Arabi... 101 2.5e-07 2
TAIR|locus:2005541 - symbol:RPS18C "S18 ribosomal protein... 101 2.5e-07 2
UNIPROTKB|Q8H588 - symbol:OJ1656_E11.108 "Putative riboso... 101 2.7e-07 2
UNIPROTKB|Q8H590 - symbol:OJ1656_E11.104 "Putative riboso... 101 3.9e-07 2
UNIPROTKB|Q755U6 - symbol:AER422C "AER422Cp" species:2848... 112 1.0e-06 1
UNIPROTKB|F1S4M2 - symbol:RPS18 "40S ribosomal protein S1... 90 1.6e-06 2
SGD|S000002858 - symbol:RPS18A "Protein component of the ... 93 1.7e-06 2
SGD|S000004488 - symbol:RPS18B "Protein component of the ... 93 1.7e-06 2
UNIPROTKB|J3JS69 - symbol:RPS18 "HCG1777176, isoform CRA_... 105 5.5e-06 1
RGD|1562404 - symbol:RGD1562404 "similar to ribosomal pro... 84 6.8e-06 2
UNIPROTKB|Q9GT46 - symbol:IrpS18 "Ribosomal protein S18" ... 101 1.5e-05 1
UNIPROTKB|Q8TRR2 - symbol:rps13 "30S ribosomal protein S1... 101 0.00035 1
>TAIR|locus:2145618 [details] [associations]
symbol:EMB3137 "EMBRYO DEFECTIVE 3137" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0015935 "small ribosomal
subunit" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=IBA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0006354
"DNA-dependent transcription, elongation" evidence=RCA] [GO:0009773
"photosynthetic electron transport in photosystem I" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0035304
"regulation of protein dephosphorylation" evidence=RCA]
InterPro:IPR001892 InterPro:IPR010979 InterPro:IPR018269
InterPro:IPR019980 Pfam:PF00416 PROSITE:PS00646 PROSITE:PS50159
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0006412
GO:GO:0009941 GO:GO:0042254 GO:GO:0005840 GO:GO:0003735
EMBL:AL163817 GO:GO:0019843 SUPFAM:SSF46946 EMBL:Z47986 EMBL:X91955
EMBL:X86734 EMBL:AY052738 EMBL:AY039533 EMBL:Z17611 IPI:IPI00535943
PIR:S59594 RefSeq:NP_568299.1 UniGene:At.19669
ProteinModelPortal:P42732 SMR:P42732 STRING:P42732 PaxDb:P42732
PRIDE:P42732 EnsemblPlants:AT5G14320.1 GeneID:831282
KEGG:ath:AT5G14320 GeneFarm:44 TAIR:At5g14320 eggNOG:COG0099
HOGENOM:HOG000039879 InParanoid:P42732 KO:K02952 OMA:REVAMNI
PhylomeDB:P42732 ProtClustDB:CLSN2689668 Genevestigator:P42732
GermOnline:AT5G14320 HAMAP:MF_01315 PANTHER:PTHR10871
TIGRFAMs:TIGR03631 Uniprot:P42732
Length = 169
Score = 679 (244.1 bits), Expect = 8.2e-67, P = 8.2e-67
Identities = 130/169 (76%), Positives = 147/169 (86%)
Query: 1 MVQTLAMPVAPALSVICNGHNNNLLTNASLSFPVSKQPQYPGLSIQCARVGGVEIPNNKR 60
M Q +AMPVA +LS+ICN +N L+ +L+ P S P LSI+CARVGGVEIP NKR
Sbjct: 1 MAQMVAMPVAHSLSLICNWAKSNPLSRNTLALPASNTPNKQSLSIRCARVGGVEIPANKR 60
Query: 61 IEYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITIRDEVSKYMIEGDLRRFNAL 120
IEYSLQYIHG+GRTRARQILVDL+MENKITKDM+EEELI +RDEVSKYMIEGDLRRFNAL
Sbjct: 61 IEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEELIILRDEVSKYMIEGDLRRFNAL 120
Query: 121 AIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 169
AI+RLKEIQCYRG+RHIQGLPCRGQ TKNNCRTLKGK++AIAGKKK +
Sbjct: 121 AIKRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKVSK 169
>UNIPROTKB|Q0DPA4 [details] [associations]
symbol:Os03g0704000 "Os03g0704000 protein" species:39947
"Oryza sativa Japonica Group" [GO:0003735 "structural constituent
of ribosome" evidence=IBA] [GO:0005739 "mitochondrion"
evidence=IBA] [GO:0006412 "translation" evidence=IBA] [GO:0015935
"small ribosomal subunit" evidence=IBA] [GO:0042254 "ribosome
biogenesis" evidence=IBA] [GO:0005829 "cytosol" evidence=IBA]
InterPro:IPR001892 InterPro:IPR010979 Pfam:PF00416 PROSITE:PS50159
GO:GO:0005739 GO:GO:0006412 GO:GO:0042254 EMBL:AP008209
GO:GO:0003723 GO:GO:0003735 SUPFAM:SSF46946 GO:GO:0015935
eggNOG:COG0099 KO:K02952 PANTHER:PTHR10871 RefSeq:NP_001051020.2
UniGene:Os.68758 STRING:Q0DPA4 GeneID:4333848 KEGG:osa:4333848
Gramene:Q0DPA4 Uniprot:Q0DPA4
Length = 203
Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
Identities = 73/108 (67%), Positives = 95/108 (87%)
Query: 27 NASLSFPVSKQPQ--YPGLSIQCARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLK 84
++S+SFPV K+ + GL I+C R+GGVEIPN+KR+EYSLQYIHG+GR+R+RQIL+DL
Sbjct: 24 SSSVSFPVPKKGGIGHGGLRIECIRIGGVEIPNHKRVEYSLQYIHGIGRSRSRQILLDLN 83
Query: 85 MENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYR 132
+NK+TKD+SEEE+IT+R EV+KYMIEGDL+RFN +AI RLKEI+CYR
Sbjct: 84 FDNKVTKDLSEEEVITLRKEVTKYMIEGDLKRFNRVAIERLKEIRCYR 131
>UNIPROTKB|A8JDP6 [details] [associations]
symbol:PRPS13 "Plastid ribosomal protein S13" species:3055
"Chlamydomonas reinhardtii" [GO:0003735 "structural constituent of
ribosome" evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA]
[GO:0006412 "translation" evidence=IBA] [GO:0015935 "small
ribosomal subunit" evidence=IBA] [GO:0042254 "ribosome biogenesis"
evidence=IBA] [GO:0005829 "cytosol" evidence=IBA]
InterPro:IPR001892 InterPro:IPR010979 InterPro:IPR018269
InterPro:IPR019980 Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646
PROSITE:PS50159 GO:GO:0005739 GO:GO:0006412 GO:GO:0009941
GO:GO:0042254 GO:GO:0003723 GO:GO:0003735 SUPFAM:SSF46946
GO:GO:0015935 eggNOG:COG0099 KO:K02952 OMA:REVAMNI
PANTHER:PTHR10871 TIGRFAMs:TIGR03631 EMBL:DS496163
RefSeq:XP_001700563.1 UniGene:Cre.14084 ProteinModelPortal:A8JDP6
SMR:A8JDP6 STRING:A8JDP6 PRIDE:A8JDP6 ProMEX:A8JDP6
EnsemblPlants:EDO98007 GeneID:5726085 KEGG:cre:CHLREDRAFT_195627
ProtClustDB:CLSN2923472 HAMAP:MF_01315_B Uniprot:A8JDP6
Length = 164
Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
Identities = 75/132 (56%), Positives = 89/132 (67%)
Query: 38 PQYPGLSIQCARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEE 97
P+ L I RV VEIPN+KRIE SLQYI G+G T A+ IL D +ENK T +++EEE
Sbjct: 33 PRRAPLHIMNLRVNNVEIPNSKRIEVSLQYIFGIGETTAQTILRDTGVENKKTYELNEEE 92
Query: 98 LITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGK 157
+ +R EV KY E DLRR A I+RLK+I CYRG RHI GLP RGQ TK N RT KGK
Sbjct: 93 INKLRSEVEKYTTEADLRRVVAQNIKRLKDIGCYRGRRHIMGLPVRGQRTKTNARTRKGK 152
Query: 158 RVAIAGKKKAPR 169
+A KKKA +
Sbjct: 153 AKTVANKKKATK 164
>TAIR|locus:2203216 [details] [associations]
symbol:AT1G77750 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA;ISS] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=ISM;IDA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA;ISS] [GO:0015935 "small ribosomal subunit"
evidence=ISS] [GO:0042254 "ribosome biogenesis" evidence=IBA]
[GO:0005763 "mitochondrial small ribosomal subunit" evidence=TAS]
[GO:0009507 "chloroplast" evidence=IDA] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=RCA] InterPro:IPR001892
InterPro:IPR010979 InterPro:IPR018269 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0006412 GO:GO:0042254 GO:GO:0003735
GO:GO:0019843 EMBL:AC012193 GO:GO:0005763 SUPFAM:SSF46946
eggNOG:COG0099 HOGENOM:HOG000039879 KO:K02952 HAMAP:MF_01315
PANTHER:PTHR10871 EMBL:BT010186 IPI:IPI00540022 PIR:D96807
RefSeq:NP_177898.1 UniGene:At.34407 ProteinModelPortal:Q9CA19
SMR:Q9CA19 STRING:Q9CA19 PaxDb:Q9CA19 PRIDE:Q9CA19
EnsemblPlants:AT1G77750.1 GeneID:844111 KEGG:ath:AT1G77750
TAIR:At1g77750 InParanoid:Q9CA19 OMA:RSATTLF
ProtClustDB:CLSN2679459 Genevestigator:Q9CA19 GermOnline:AT1G77750
Uniprot:Q9CA19
Length = 154
Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
Identities = 69/151 (45%), Positives = 97/151 (64%)
Query: 19 GHNNNLLTNASLSFPVSKQPQYPGLSIQCARVGGVEIPNNKRIEYSLQYIHGVGRTRARQ 78
G + T +S + + + GL +Q RVG E+PNNK ++ LQ ++G+GR ++ Q
Sbjct: 3 GLRRSATTLFDISQSLLRNVTFHGLRVQGIRVGNAEVPNNKPLKTGLQEVYGIGRRKSHQ 62
Query: 79 ILVDLKMENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQ 138
+L L + NK+ +D++ +ELI +R+EV ++ +LRR I+RL E+ CYRG RH
Sbjct: 63 VLCHLGITNKLARDLTGKELIDLREEVGQHQHGDELRRRVGSEIQRLVEVDCYRGSRHRH 122
Query: 139 GLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 169
GLPCRGQ T N RT KGK VAIAGKKKAPR
Sbjct: 123 GLPCRGQRTSTNARTKKGKAVAIAGKKKAPR 153
>UNIPROTKB|P20282 [details] [associations]
symbol:rpsM "30S ribosomal protein S13" species:224308
"Bacillus subtilis subsp. subtilis str. 168" [GO:0003735
"structural constituent of ribosome" evidence=IBA] [GO:0005829
"cytosol" evidence=IBA] [GO:0006412 "translation" evidence=IBA]
[GO:0015935 "small ribosomal subunit" evidence=IBA] [GO:0042254
"ribosome biogenesis" evidence=IBA] InterPro:IPR001892
InterPro:IPR010979 InterPro:IPR018269 InterPro:IPR019980
Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159
GO:GO:0005829 GO:GO:0006412 GO:GO:0042254 GO:GO:0003735
EMBL:AL009126 GenomeReviews:AL009126_GR GO:GO:0000049 GO:GO:0019843
SUPFAM:SSF46946 GO:GO:0015935 EMBL:L47971 eggNOG:COG0099
HOGENOM:HOG000039879 KO:K02952 HAMAP:MF_01315 PANTHER:PTHR10871
TIGRFAMs:TIGR03631 ProtClustDB:PRK05179 EMBL:M26414 EMBL:M13957
PIR:C32307 RefSeq:NP_388022.2 ProteinModelPortal:P20282 SMR:P20282
EnsemblBacteria:EBBACT00000002700 GeneID:938928 KEGG:bsu:BSU01410
PATRIC:18971793 GenoList:BSU01410 BioCyc:BSUB:BSU01410-MONOMER
Uniprot:P20282
Length = 121
Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
Identities = 65/120 (54%), Positives = 86/120 (71%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVS 106
AR+ GV+IP +KR+ SL YI G+GRT A+Q+L + + E+ +D++EEEL IRD +
Sbjct: 2 ARIAGVDIPRDKRVVISLTYIFGIGRTTAQQVLKEAGVSEDTRVRDLTEEELGKIRDIID 61
Query: 107 KYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 166
K +EGDLRR +L I+RL EI YRGIRH +GLP RGQ++KNN RT KG R +A KKK
Sbjct: 62 KLKVEGDLRREVSLNIKRLIEIGSYRGIRHRRGLPVRGQNSKNNARTRKGPRRTVANKKK 121
>TIGR_CMR|BA_0135 [details] [associations]
symbol:BA_0135 "ribosomal protein S13" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR001892 InterPro:IPR010979 InterPro:IPR018269
InterPro:IPR019980 Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646
PROSITE:PS50159 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0000049 GO:GO:0019843 SUPFAM:SSF46946 eggNOG:COG0099
HOGENOM:HOG000039879 KO:K02952 OMA:REVAMNI HAMAP:MF_01315
PANTHER:PTHR10871 TIGRFAMs:TIGR03631 ProtClustDB:PRK05179
RefSeq:NP_842703.1 RefSeq:YP_016740.1 RefSeq:YP_026421.1
ProteinModelPortal:P62176 SMR:P62176 DNASU:1085954
EnsemblBacteria:EBBACT00000008086 EnsemblBacteria:EBBACT00000018614
EnsemblBacteria:EBBACT00000020746 GeneID:1085954 GeneID:2819393
GeneID:2850910 KEGG:ban:BA_0135 KEGG:bar:GBAA_0135 KEGG:bat:BAS0135
BioCyc:BANT260799:GJAJ-146-MONOMER
BioCyc:BANT261594:GJ7F-148-MONOMER Uniprot:P62176
Length = 121
Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
Identities = 61/120 (50%), Positives = 84/120 (70%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVS 106
AR+ GV+IP +KR+ SL Y+ G+GRT A +IL + + E +D++E+EL IRD +
Sbjct: 2 ARIAGVDIPRDKRVVISLTYVFGIGRTTAEKILAEAGISEETRVRDLTEDELGRIRDIID 61
Query: 107 KYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 166
+ +EGDLRR +L I+RL EI YRG+RH +GLP RGQ++KNN RT KG R +A KKK
Sbjct: 62 RIKVEGDLRREVSLNIKRLMEIGSYRGLRHRRGLPVRGQNSKNNARTRKGPRRTVANKKK 121
>UNIPROTKB|O66486 [details] [associations]
symbol:rpsM "30S ribosomal protein S13" species:224324
"Aquifex aeolicus VF5" [GO:0003735 "structural constituent of
ribosome" evidence=IBA] [GO:0005829 "cytosol" evidence=IBA]
[GO:0006412 "translation" evidence=IBA] [GO:0015935 "small
ribosomal subunit" evidence=IBA] [GO:0042254 "ribosome biogenesis"
evidence=IBA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 InterPro:IPR019980 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 GO:GO:0005829
GO:GO:0006412 GO:GO:0042254 GO:GO:0003735 GO:GO:0000049
GO:GO:0019843 EMBL:AE000657 GenomeReviews:AE000657_GR
SUPFAM:SSF46946 GO:GO:0015935 eggNOG:COG0099 HOGENOM:HOG000039879
KO:K02952 OMA:REVAMNI HAMAP:MF_01315 PANTHER:PTHR10871
TIGRFAMs:TIGR03631 ProtClustDB:PRK05179 PIR:C70307
RefSeq:NP_213046.1 ProteinModelPortal:O66486 SMR:O66486
GeneID:1192499 KEGG:aae:aq_074 PATRIC:20957847
BioCyc:AAEO224324:GJBH-61-MONOMER Uniprot:O66486
Length = 126
Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
Identities = 60/122 (49%), Positives = 85/122 (69%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVS 106
AR+ GV++PNNKR+E +L YI+G+G +RAR+I + K +++ +EL T+R +
Sbjct: 2 ARIAGVDLPNNKRLEVALTYIYGIGWSRAREICEKTGIPCTKRVGELTPDELNTLRKFID 61
Query: 107 K-YMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
+ Y +EGDLRR L I++LK++ CYRGIRH +GLP RGQ T+ N RT KGKR + G K
Sbjct: 62 ENYKVEGDLRREVQLNIKKLKDMGCYRGIRHARGLPVRGQQTRTNARTRKGKRKTVGGTK 121
Query: 166 KA 167
KA
Sbjct: 122 KA 123
>TIGR_CMR|CHY_2284 [details] [associations]
symbol:CHY_2284 "ribosomal protein S13" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 InterPro:IPR019980 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0000049 GO:GO:0019843 SUPFAM:SSF46946 eggNOG:COG0099
KO:K02952 OMA:REVAMNI HAMAP:MF_01315 PANTHER:PTHR10871
TIGRFAMs:TIGR03631 ProtClustDB:PRK05179 RefSeq:YP_361093.1
ProteinModelPortal:Q3A9U1 SMR:Q3A9U1 STRING:Q3A9U1 GeneID:3726461
KEGG:chy:CHY_2284 PATRIC:21277639 HOGENOM:HOG000039878
BioCyc:CHYD246194:GJCN-2283-MONOMER Uniprot:Q3A9U1
Length = 123
Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
Identities = 61/122 (50%), Positives = 85/122 (69%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL--VDLKMENKITKDMSEEELITIRDEV 105
AR+ GV++P +KR+E +L YI+G+GR A IL + + ++ KD++EEE+ +RDE+
Sbjct: 2 ARIAGVDLPRDKRVEIALTYIYGIGRPTANVILKKTGINPDTRV-KDLTEEEVAKLRDEI 60
Query: 106 SK-YMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGK 164
K Y +EG+LRR AL I+RL EI CYRGIRH +GLP RGQ T+ N RT KG R + K
Sbjct: 61 EKNYKVEGELRREVALNIKRLIEIGCYRGIRHRKGLPVRGQRTRTNARTRKGPRRTVGVK 120
Query: 165 KK 166
+K
Sbjct: 121 RK 122
>UNIPROTKB|Q749B0 [details] [associations]
symbol:rpsM "30S ribosomal protein S13" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=IBA] [GO:0005829 "cytosol" evidence=IBA]
[GO:0006412 "translation" evidence=IBA] [GO:0015935 "small
ribosomal subunit" evidence=IBA] [GO:0042254 "ribosome biogenesis"
evidence=IBA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 InterPro:IPR019980 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 GO:GO:0005829
GO:GO:0006412 GO:GO:0042254 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0003735 GO:GO:0000049 GO:GO:0019843 SUPFAM:SSF46946
GO:GO:0015935 eggNOG:COG0099 HOGENOM:HOG000039879 KO:K02952
OMA:REVAMNI HAMAP:MF_01315 PANTHER:PTHR10871 TIGRFAMs:TIGR03631
ProtClustDB:PRK05179 RefSeq:NP_953877.1 ProteinModelPortal:Q749B0
SMR:Q749B0 GeneID:2687149 KEGG:gsu:GSU2834 PATRIC:22028513
BioCyc:GSUL243231:GH27-2793-MONOMER Uniprot:Q749B0
Length = 122
Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
Identities = 59/121 (48%), Positives = 85/121 (70%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVS 106
AR+ G+++P NKRIE +L YI G+GRT A++IL + + + T +++E E+ IRD +
Sbjct: 2 ARIAGIDLPRNKRIEIALTYIFGIGRTTAQRILAETGVSADTRTDNLAESEVAKIRDYID 61
Query: 107 KYM-IEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
K + +EGDLRR ++ I+RL ++ CYRG+RH +GLP RGQ TK N RT KG +AGKK
Sbjct: 62 KNLKVEGDLRRDVSMDIKRLMDLGCYRGLRHRKGLPVRGQRTKTNARTRKGPARTVAGKK 121
Query: 166 K 166
K
Sbjct: 122 K 122
>TIGR_CMR|GSU_2834 [details] [associations]
symbol:GSU_2834 "ribosomal protein S13" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR001892
InterPro:IPR010979 InterPro:IPR018269 InterPro:IPR019980
Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159
GO:GO:0005829 GO:GO:0006412 GO:GO:0042254 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0003735 GO:GO:0000049 GO:GO:0019843
SUPFAM:SSF46946 GO:GO:0015935 eggNOG:COG0099 HOGENOM:HOG000039879
KO:K02952 OMA:REVAMNI HAMAP:MF_01315 PANTHER:PTHR10871
TIGRFAMs:TIGR03631 ProtClustDB:PRK05179 RefSeq:NP_953877.1
ProteinModelPortal:Q749B0 SMR:Q749B0 GeneID:2687149
KEGG:gsu:GSU2834 PATRIC:22028513
BioCyc:GSUL243231:GH27-2793-MONOMER Uniprot:Q749B0
Length = 122
Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
Identities = 59/121 (48%), Positives = 85/121 (70%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVS 106
AR+ G+++P NKRIE +L YI G+GRT A++IL + + + T +++E E+ IRD +
Sbjct: 2 ARIAGIDLPRNKRIEIALTYIFGIGRTTAQRILAETGVSADTRTDNLAESEVAKIRDYID 61
Query: 107 KYM-IEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
K + +EGDLRR ++ I+RL ++ CYRG+RH +GLP RGQ TK N RT KG +AGKK
Sbjct: 62 KNLKVEGDLRRDVSMDIKRLMDLGCYRGLRHRKGLPVRGQRTKTNARTRKGPARTVAGKK 121
Query: 166 K 166
K
Sbjct: 122 K 122
>UNIPROTKB|O06327 [details] [associations]
symbol:rpsM "30S ribosomal protein S13" species:1773
"Mycobacterium tuberculosis" [GO:0005886 "plasma membrane"
evidence=IDA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 InterPro:IPR019980 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 GO:GO:0005886
EMBL:AE000516 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
EMBL:BX842583 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0000049 GO:GO:0019843 SUPFAM:SSF46946 eggNOG:COG0099
HOGENOM:HOG000039879 KO:K02952 OMA:REVAMNI HAMAP:MF_01315
PANTHER:PTHR10871 TIGRFAMs:TIGR03631 ProtClustDB:PRK05179
PIR:A70566 RefSeq:NP_217977.1 RefSeq:NP_338092.1
RefSeq:YP_006516949.1 ProteinModelPortal:O06327 SMR:O06327
PRIDE:O06327 EnsemblBacteria:EBMYCT00000002449
EnsemblBacteria:EBMYCT00000070559 GeneID:13317067 GeneID:887514
GeneID:926626 KEGG:mtc:MT3567 KEGG:mtu:Rv3460c KEGG:mtv:RVBD_3460c
PATRIC:18129571 TubercuList:Rv3460c Uniprot:O06327
Length = 124
Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
Identities = 61/122 (50%), Positives = 86/122 (70%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVS 106
AR+ GV++P +KR+E +L YI G+GRTR+ +IL ++ + T+D++EE+LI +RD +
Sbjct: 2 ARLVGVDLPRDKRMEVALTYIFGIGRTRSNEILAATGIDRDLRTRDLTEEQLIHLRDYIE 61
Query: 107 KYM-IEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
+ +EGDLRR IRR EI CY+G+RH +G+P RGQ TK N RT KG + IAGKK
Sbjct: 62 ANLKVEGDLRREVQADIRRKIEIGCYQGLRHRRGMPVRGQRTKTNARTRKGPKRTIAGKK 121
Query: 166 KA 167
KA
Sbjct: 122 KA 123
>UNIPROTKB|Q89JA6 [details] [associations]
symbol:rpsM "30S ribosomal protein S13" species:224911
"Bradyrhizobium japonicum USDA 110" [GO:0003735 "structural
constituent of ribosome" evidence=IBA] [GO:0005829 "cytosol"
evidence=IBA] [GO:0006412 "translation" evidence=IBA] [GO:0015935
"small ribosomal subunit" evidence=IBA] [GO:0042254 "ribosome
biogenesis" evidence=IBA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 InterPro:IPR019980 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 GO:GO:0005829
GO:GO:0006412 GO:GO:0042254 GO:GO:0003735 GO:GO:0000049
GO:GO:0019843 SUPFAM:SSF46946 GO:GO:0015935 EMBL:BA000040
GenomeReviews:BA000040_GR eggNOG:COG0099 HOGENOM:HOG000039879
KO:K02952 OMA:REVAMNI HAMAP:MF_01315 PANTHER:PTHR10871
TIGRFAMs:TIGR03631 ProtClustDB:PRK05179 RefSeq:NP_772018.1
ProteinModelPortal:Q89JA6 SMR:Q89JA6 GeneID:1051268
KEGG:bja:bll5378 PATRIC:21194446
BioCyc:BJAP224911:GJEJ-5418-MONOMER Uniprot:Q89JA6
Length = 122
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 59/121 (48%), Positives = 84/121 (69%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVS 106
AR+ GV IP NKR+ +LQYIHG+G+ A +IL +K+ ++ +S+ E++ IR+ +
Sbjct: 2 ARIAGVNIPTNKRVLIALQYIHGIGQKIAGEILEKVKIPVDRRVSQLSDAEVLQIREVID 61
Query: 107 K-YMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
+ Y++EGDLRR + I+RL ++ CYRG+RH +GLP RGQ T N RT KG AIAGKK
Sbjct: 62 RDYLVEGDLRREVGINIKRLMDLGCYRGLRHRRGLPVRGQRTHTNARTRKGPAKAIAGKK 121
Query: 166 K 166
K
Sbjct: 122 K 122
>UNIPROTKB|Q7NFF2 [details] [associations]
symbol:rpsM "30S ribosomal protein S13" species:251221
"Gloeobacter violaceus PCC 7421" [GO:0003735 "structural
constituent of ribosome" evidence=IBA] [GO:0005829 "cytosol"
evidence=IBA] [GO:0006412 "translation" evidence=IBA] [GO:0015935
"small ribosomal subunit" evidence=IBA] [GO:0042254 "ribosome
biogenesis" evidence=IBA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 InterPro:IPR019980 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 GO:GO:0005829
GO:GO:0006412 GO:GO:0042254 GO:GO:0003735 GO:GO:0000049
GO:GO:0019843 SUPFAM:SSF46946 GO:GO:0015935 EMBL:BA000045
GenomeReviews:BA000045_GR eggNOG:COG0099 KO:K02952 OMA:REVAMNI
HAMAP:MF_01315 PANTHER:PTHR10871 TIGRFAMs:TIGR03631
ProtClustDB:PRK05179 RefSeq:NP_926520.1 ProteinModelPortal:Q7NFF2
SMR:Q7NFF2 GeneID:2601978 KEGG:gvi:gvip484 PATRIC:22046643
BioCyc:GVIO251221:GH9A-3624-MONOMER Uniprot:Q7NFF2
Length = 127
Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
Identities = 58/122 (47%), Positives = 83/122 (68%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVS 106
AR+ GV+IP KR+E +L YI G+G +RA QIL+ + N +++++ ++ +R+E+
Sbjct: 2 ARIAGVDIPREKRVEIALTYIFGIGPSRATQILLSTGINPNLRVRELTDVQVSLLREEIE 61
Query: 107 -KYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
KY +EGDLRRF + I+RL +I C RG RH GLP RGQ T+ N RT +G R +AGKK
Sbjct: 62 QKYQVEGDLRRFENINIKRLMDIGCLRGRRHRLGLPVRGQRTRTNARTRRGGRKTVAGKK 121
Query: 166 KA 167
KA
Sbjct: 122 KA 123
>UNIPROTKB|Q9RSJ9 [details] [associations]
symbol:rpsM "30S ribosomal protein S13" species:243230
"Deinococcus radiodurans R1" [GO:0003735 "structural constituent of
ribosome" evidence=IBA] [GO:0005829 "cytosol" evidence=IBA]
[GO:0006412 "translation" evidence=IBA] [GO:0015935 "small
ribosomal subunit" evidence=IBA] [GO:0042254 "ribosome biogenesis"
evidence=IBA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 InterPro:IPR019980 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 GO:GO:0005829
GO:GO:0006412 GO:GO:0042254 GO:GO:0003735 GO:GO:0000049
GO:GO:0019843 EMBL:AE000513 GenomeReviews:AE000513_GR
SUPFAM:SSF46946 GO:GO:0015935 eggNOG:COG0099 HOGENOM:HOG000039879
KO:K02952 OMA:REVAMNI HAMAP:MF_01315 PANTHER:PTHR10871
TIGRFAMs:TIGR03631 ProtClustDB:PRK05179 PIR:F75312
RefSeq:NP_295848.1 ProteinModelPortal:Q9RSJ9 SMR:Q9RSJ9
GeneID:1799972 KEGG:dra:DR_2125 PATRIC:21631926
BioCyc:DRAD243230:GH46-2493-MONOMER Uniprot:Q9RSJ9
Length = 126
Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
Identities = 58/125 (46%), Positives = 85/125 (68%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILV--DLKMENKITKDMSEEELITIRDEV 105
AR+ G+++P KR+E +L YI+G+G TR+++IL + + ++ K++SE E T+R+ +
Sbjct: 2 ARIAGIDLPREKRVEIALTYIYGIGLTRSKEILARTGVSPDTRV-KNLSEAEQSTLREAI 60
Query: 106 SK-YMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGK 164
K Y +EGDLR I+RL +I YRG+RH +GLP RGQ TK N RT KG + +AGK
Sbjct: 61 EKTYKVEGDLRNEVGQNIKRLMDIGAYRGLRHRRGLPVRGQRTKTNARTRKGPKKTVAGK 120
Query: 165 KKAPR 169
KKA R
Sbjct: 121 KKATR 125
>UNIPROTKB|A9WH90 [details] [associations]
symbol:rpsM "30S ribosomal protein S13" species:324602
"Chloroflexus aurantiacus J-10-fl" [GO:0003735 "structural
constituent of ribosome" evidence=IBA] [GO:0005829 "cytosol"
evidence=IBA] [GO:0006412 "translation" evidence=IBA] [GO:0015935
"small ribosomal subunit" evidence=IBA] [GO:0042254 "ribosome
biogenesis" evidence=IBA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 InterPro:IPR019980 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 GO:GO:0005829
GO:GO:0006412 GO:GO:0042254 GO:GO:0003735 GO:GO:0000049
GO:GO:0019843 EMBL:CP000909 GenomeReviews:CP000909_GR
SUPFAM:SSF46946 GO:GO:0015935 eggNOG:COG0099 HOGENOM:HOG000039879
KO:K02952 OMA:REVAMNI HAMAP:MF_01315 PANTHER:PTHR10871
TIGRFAMs:TIGR03631 ProtClustDB:PRK05179 RefSeq:YP_001635991.1
ProteinModelPortal:A9WH90 SMR:A9WH90 STRING:A9WH90 PRIDE:A9WH90
GeneID:5826857 KEGG:cau:Caur_2393 PATRIC:21415911
BioCyc:CAUR324602:GIXU-2432-MONOMER Uniprot:A9WH90
Length = 127
Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
Identities = 60/126 (47%), Positives = 89/126 (70%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL--VDLKMENKITKDMSEEELITIRDEV 105
AR+ GV+IP NK+IE ++ YI+G+GR+ +IL ++ E ++ +D++EEE+ IR+ V
Sbjct: 2 ARIAGVDIPRNKKIEIAITYIYGIGRSNGMEILRKANVNPERRV-RDLTEEEVGRIREIV 60
Query: 106 SK-YMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKR-VAIAG 163
+ Y +EGDLRR L I+RL +I CYRG+RH +G+P RGQ T+ N RT +G+R AI
Sbjct: 61 DREYRVEGDLRREVQLNIKRLMDIGCYRGLRHRRGMPVRGQRTRTNARTRRGRRGQAIGI 120
Query: 164 KKKAPR 169
KKKA +
Sbjct: 121 KKKATK 126
>UNIPROTKB|O86773 [details] [associations]
symbol:rpsM "30S ribosomal protein S13" species:100226
"Streptomyces coelicolor A3(2)" [GO:0003735 "structural constituent
of ribosome" evidence=IBA] [GO:0005829 "cytosol" evidence=IBA]
[GO:0006412 "translation" evidence=IBA] [GO:0015935 "small
ribosomal subunit" evidence=IBA] [GO:0042254 "ribosome biogenesis"
evidence=IBA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 InterPro:IPR019980 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 GO:GO:0005829
GO:GO:0006412 GO:GO:0042254 GO:GO:0003735 EMBL:AL939121
GenomeReviews:AL645882_GR GO:GO:0000049 GO:GO:0019843
SUPFAM:SSF46946 GO:GO:0015935 eggNOG:COG0099 HOGENOM:HOG000039879
KO:K02952 OMA:REVAMNI HAMAP:MF_01315 PANTHER:PTHR10871
TIGRFAMs:TIGR03631 ProtClustDB:PRK05179 PIR:T35556
RefSeq:NP_628885.1 ProteinModelPortal:O86773 SMR:O86773
PhosSite:P11111095 GeneID:1100168 KEGG:sco:SCO4727 PATRIC:23739276
Uniprot:O86773
Length = 126
Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
Identities = 62/121 (51%), Positives = 80/121 (66%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVS 106
ARV GV+IP KR+E +L Y+ G+GRT ++Q L ++ N +D+SEE+L+ IR+ V
Sbjct: 2 ARVSGVDIPREKRVEIALTYVFGIGRTLSQQTLAATGVDPNTRVRDLSEEQLVAIREYVD 61
Query: 107 KYM-IEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
+ EGDLRR IRR EI Y+G+RH +GLP RGQ T N RT KG R AIAGKK
Sbjct: 62 NNIKTEGDLRREVQADIRRKVEIGTYQGLRHRRGLPVRGQRTSTNARTRKGPRRAIAGKK 121
Query: 166 K 166
K
Sbjct: 122 K 122
>UNIPROTKB|Q8A499 [details] [associations]
symbol:rpsM "30S ribosomal protein S13" species:226186
"Bacteroides thetaiotaomicron VPI-5482" [GO:0003735 "structural
constituent of ribosome" evidence=IBA] [GO:0005829 "cytosol"
evidence=IBA] [GO:0006412 "translation" evidence=IBA] [GO:0015935
"small ribosomal subunit" evidence=IBA] [GO:0042254 "ribosome
biogenesis" evidence=IBA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 InterPro:IPR019980 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 GO:GO:0005829
GO:GO:0006412 GO:GO:0042254 GO:GO:0003735 GO:GO:0000049
GO:GO:0019843 EMBL:AE015928 GenomeReviews:AE015928_GR
SUPFAM:SSF46946 GO:GO:0015935 eggNOG:COG0099 HOGENOM:HOG000039879
KO:K02952 OMA:REVAMNI HAMAP:MF_01315 PANTHER:PTHR10871
TIGRFAMs:TIGR03631 ProtClustDB:PRK05179 RefSeq:NP_811616.1
ProteinModelPortal:Q8A499 SMR:Q8A499 GeneID:1072473
KEGG:bth:BT_2704 PATRIC:21060349
BioCyc:BTHE226186:GJXV-2758-MONOMER Uniprot:Q8A499
Length = 126
Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 55/123 (44%), Positives = 84/123 (68%)
Query: 49 RVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEV-S 106
R+ GV++P NKR E +L Y++G+GR+ + +IL ++ + KD ++++ IR+ + +
Sbjct: 4 RIVGVDLPQNKRGEIALTYVYGIGRSSSAKILDKAGVDKDLKVKDWTDDQAAKIREIIGA 63
Query: 107 KYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 166
+Y +EGDLR L I+RL +I CYRG+RH GLP RGQ TKNN RT KG++ +A KKK
Sbjct: 64 EYKVEGDLRSEIQLNIKRLMDIGCYRGVRHRIGLPVRGQSTKNNARTRKGRKKTVANKKK 123
Query: 167 APR 169
A +
Sbjct: 124 ATK 126
>UNIPROTKB|P0A7S9 [details] [associations]
symbol:rpsM species:83333 "Escherichia coli K-12"
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA]
[GO:0006412 "translation" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IBA] [GO:0019843 "rRNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000049 "tRNA binding"
evidence=IEA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 InterPro:IPR019980 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0006412 EMBL:U18997 GO:GO:0042254 GO:GO:0003735 GO:GO:0000049
GO:GO:0019843 PDB:3J00 PDBsum:3J00 PDB:3FIH PDB:3IZV PDB:3IZW
PDBsum:3FIH PDBsum:3IZV PDBsum:3IZW GO:GO:0022627 SUPFAM:SSF46946
PDB:3SFS PDB:3UOQ PDBsum:3SFS PDBsum:3UOQ EMBL:X02543 EMBL:M12432
eggNOG:COG0099 HOGENOM:HOG000039879 KO:K02952 OMA:REVAMNI
HAMAP:MF_01315 PANTHER:PTHR10871 TIGRFAMs:TIGR03631 PDB:4GAS
PDB:4GD1 PDBsum:4GAS PDBsum:4GD1 PDB:1M5G PDB:1P6G PDB:1P87
PDB:1VS5 PDB:1VS7 PDB:2AVY PDB:2AW7 PDB:2GY9 PDB:2GYB PDB:2I2P
PDB:2I2U PDB:2QAL PDB:2QAN PDB:2QB9 PDB:2QBB PDB:2QBD PDB:2QBF
PDB:2QBH PDB:2QBJ PDB:2QOU PDB:2QOW PDB:2QOY PDB:2QP0 PDB:2VHO
PDB:2VHP PDB:2WWL PDB:2YKR PDB:2Z4K PDB:2Z4M PDB:3DF1 PDB:3DF3
PDB:3E1A PDB:3E1C PDB:3I1M PDB:3I1O PDB:3I1Q PDB:3I1S PDB:3I1Z
PDB:3I21 PDB:3J0U PDB:3J0V PDB:3J0X PDB:3J0Z PDB:3J10 PDB:3J13
PDB:3J18 PDB:3KC4 PDB:3OAQ PDB:3OAR PDB:3OFA PDB:3OFB PDB:3OFO
PDB:3OFP PDB:3OFX PDB:3OFY PDB:3OR9 PDB:3ORA PDB:4A2I PDB:4ADV
PDB:4GAQ PDB:4GD2 PDBsum:1M5G PDBsum:1P6G PDBsum:1P87 PDBsum:1VS5
PDBsum:1VS7 PDBsum:2AVY PDBsum:2AW7 PDBsum:2GY9 PDBsum:2GYB
PDBsum:2I2P PDBsum:2I2U PDBsum:2QAL PDBsum:2QAN PDBsum:2QB9
PDBsum:2QBB PDBsum:2QBD PDBsum:2QBF PDBsum:2QBH PDBsum:2QBJ
PDBsum:2QOU PDBsum:2QOW PDBsum:2QOY PDBsum:2QP0 PDBsum:2VHO
PDBsum:2VHP PDBsum:2WWL PDBsum:2YKR PDBsum:2Z4K PDBsum:2Z4M
PDBsum:3DF1 PDBsum:3DF3 PDBsum:3E1A PDBsum:3E1C PDBsum:3I1M
PDBsum:3I1O PDBsum:3I1Q PDBsum:3I1S PDBsum:3I1Z PDBsum:3I21
PDBsum:3J0U PDBsum:3J0V PDBsum:3J0X PDBsum:3J0Z PDBsum:3J10
PDBsum:3J13 PDBsum:3J18 PDBsum:3KC4 PDBsum:3OAQ PDBsum:3OAR
PDBsum:3OFA PDBsum:3OFB PDBsum:3OFO PDBsum:3OFP PDBsum:3OFX
PDBsum:3OFY PDBsum:3OR9 PDBsum:3ORA PDBsum:4A2I PDBsum:4ADV
PDBsum:4GAQ PDBsum:4GD2 ProtClustDB:PRK05179 EMBL:M10213 PIR:A23807
RefSeq:NP_417757.1 RefSeq:YP_492134.1 ProteinModelPortal:P0A7S9
SMR:P0A7S9 DIP:DIP-35855N IntAct:P0A7S9 MINT:MINT-1290225
PaxDb:P0A7S9 PRIDE:P0A7S9 EnsemblBacteria:EBESCT00000003493
EnsemblBacteria:EBESCT00000015980 GeneID:12934445 GeneID:947791
KEGG:ecj:Y75_p3878 KEGG:eco:b3298 PATRIC:32122028 EchoBASE:EB0905
EcoGene:EG10912 BioCyc:EcoCyc:EG10912-MONOMER
BioCyc:ECOL316407:JW3260-MONOMER EvolutionaryTrace:P0A7S9
Genevestigator:P0A7S9 Uniprot:P0A7S9
Length = 118
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 53/115 (46%), Positives = 81/115 (70%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKIT-KDMSEEELITIRDEVS 106
AR+ G+ IP++K +L I+GVG+TR++ IL + + ++SE ++ T+RDEV+
Sbjct: 2 ARIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEVA 61
Query: 107 KYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAI 161
K+++EGDLRR +++I+RL ++ CYRG+RH +GLP RGQ TK N RT KG R I
Sbjct: 62 KFVVEGDLRREISMSIKRLMDLGCYRGLRHRRGLPVRGQRTKTNARTRKGPRKPI 116
>UNIPROTKB|A6UZL0 [details] [associations]
symbol:rpsM "30S ribosomal protein S13" species:381754
"Pseudomonas aeruginosa PA7" [GO:0003735 "structural constituent of
ribosome" evidence=IBA] [GO:0005829 "cytosol" evidence=IBA]
[GO:0006412 "translation" evidence=IBA] [GO:0015935 "small
ribosomal subunit" evidence=IBA] [GO:0042254 "ribosome biogenesis"
evidence=IBA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 InterPro:IPR019980 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 GO:GO:0005829
GO:GO:0006412 GO:GO:0042254 GO:GO:0003735 EMBL:CP000744
GenomeReviews:CP000744_GR GO:GO:0000049 GO:GO:0019843
SUPFAM:SSF46946 GO:GO:0015935 eggNOG:COG0099 HOGENOM:HOG000039879
KO:K02952 OMA:REVAMNI HAMAP:MF_01315 PANTHER:PTHR10871
TIGRFAMs:TIGR03631 ProtClustDB:PRK05179 RefSeq:YP_001346245.1
ProteinModelPortal:A6UZL0 SMR:A6UZL0 STRING:A6UZL0 PRIDE:A6UZL0
GeneID:5355004 KEGG:pap:PSPA7_0859 PATRIC:19823551
BioCyc:PAER381754:GHMY-924-MONOMER Uniprot:A6UZL0
Length = 118
Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
Identities = 59/116 (50%), Positives = 78/116 (67%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILV--DLKMENKITKDMSEEELITIRDEV 105
AR+ GV IP+NK SL YI+GVGRT A+ I + KI KD+S+E++ +R+EV
Sbjct: 2 ARIAGVNIPDNKHTVISLTYIYGVGRTTAQNICAATGVNPAAKI-KDLSDEQIDQLRNEV 60
Query: 106 SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAI 161
+K+ EGDLRR + I+RL ++ CYRG+RH +GLP RGQ TK N RT KG R I
Sbjct: 61 AKHTTEGDLRREINMNIKRLMDLGCYRGLRHRRGLPVRGQRTKTNARTRKGPRKPI 116
>TIGR_CMR|SO_0253 [details] [associations]
symbol:SO_0253 "ribosomal protein S13" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR001892 InterPro:IPR010979 InterPro:IPR018269
InterPro:IPR019980 Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646
PROSITE:PS50159 GO:GO:0006412 GO:GO:0005840 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0003735 GO:GO:0000049 GO:GO:0019843
SUPFAM:SSF46946 eggNOG:COG0099 HOGENOM:HOG000039879 KO:K02952
OMA:REVAMNI HAMAP:MF_01315 PANTHER:PTHR10871 TIGRFAMs:TIGR03631
ProtClustDB:PRK05179 RefSeq:NP_715893.1 ProteinModelPortal:Q8EK48
SMR:Q8EK48 GeneID:1168136 KEGG:son:SO_0253 PATRIC:23520199
Uniprot:Q8EK48
Length = 118
Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
Identities = 55/115 (47%), Positives = 77/115 (66%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVS 106
AR+ G+ IP+ K +L I G+GRTRAR I + E K++SE ++ T+R+EV+
Sbjct: 2 ARIAGINIPDQKHTVIALTAIFGIGRTRARAICAATSIAETAKIKELSEAQIDTLREEVA 61
Query: 107 KYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAI 161
KY++EGDLRR ++ I+RL ++ CYRG+RH + LP RGQ TK N RT KG R I
Sbjct: 62 KYLVEGDLRREISMNIKRLMDLGCYRGLRHRRSLPLRGQRTKTNARTRKGPRKPI 116
>TIGR_CMR|CJE_1764 [details] [associations]
symbol:CJE_1764 "ribosomal protein S13/S18" species:195099
"Campylobacter jejuni RM1221" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 InterPro:IPR019980 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 GO:GO:0006412
GO:GO:0005840 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0003735
GO:GO:0000049 GO:GO:0019843 SUPFAM:SSF46946 eggNOG:COG0099
HOGENOM:HOG000039879 KO:K02952 OMA:REVAMNI HAMAP:MF_01315
PANTHER:PTHR10871 TIGRFAMs:TIGR03631 ProtClustDB:PRK05179
RefSeq:YP_179736.1 ProteinModelPortal:Q5HSJ9 SMR:Q5HSJ9
STRING:Q5HSJ9 GeneID:3232391 KEGG:cjr:CJE1764 PATRIC:20045338
BioCyc:CJEJ195099:GJC0-1794-MONOMER Uniprot:Q5HSJ9
Length = 121
Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
Identities = 55/120 (45%), Positives = 81/120 (67%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL--VDLKMENKITKDMSEEELITIRDEV 105
AR+ GV++P KRIEY L YI+G+G +R+IL V + + ++ ++SE+E IR E+
Sbjct: 2 ARIAGVDLPKKKRIEYGLTYIYGIGLFTSRKILDKVGISYDKRV-HELSEDEAAAIRKEI 60
Query: 106 SK-YMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGK 164
+ YM+EGDLR+ A+ I+ L ++ +RG+RH +GLP RGQ TK N RT KGKR + K
Sbjct: 61 QENYMVEGDLRKQVAMDIKALMDLGSFRGLRHRKGLPVRGQKTKTNARTRKGKRKTVGAK 120
>UNIPROTKB|Q9KP05 [details] [associations]
symbol:rpsM "30S ribosomal protein S13" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 InterPro:IPR019980 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 GO:GO:0006412
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735
GO:GO:0000049 GO:GO:0019843 SUPFAM:SSF46946 eggNOG:COG0099
KO:K02952 OMA:REVAMNI HAMAP:MF_01315 PANTHER:PTHR10871
TIGRFAMs:TIGR03631 ProtClustDB:PRK05179 PIR:D82061
RefSeq:NP_232202.1 ProteinModelPortal:Q9KP05 SMR:Q9KP05
DNASU:2615591 GeneID:2615591 KEGG:vch:VC2574 PATRIC:20084174
Uniprot:Q9KP05
Length = 118
Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
Identities = 52/115 (45%), Positives = 79/115 (68%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKIT-KDMSEEELITIRDEVS 106
AR+ G+ IP++K +L I+G+G+TR++ IL DL + + +++EE++ +RD V+
Sbjct: 2 ARIAGINIPDHKHAVIALTAIYGIGKTRSKAILADLGIAESVKISELTEEQIDQLRDGVA 61
Query: 107 KYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAI 161
KY +EGDLRR ++ I+RL ++ CYRG+RH + LP RGQ TK N RT KG R I
Sbjct: 62 KYTVEGDLRREVSMNIKRLMDLGCYRGLRHRRSLPLRGQRTKTNARTRKGPRKPI 116
>TIGR_CMR|VC_2574 [details] [associations]
symbol:VC_2574 "ribosomal protein S13" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR001892 InterPro:IPR010979 InterPro:IPR018269
InterPro:IPR019980 Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646
PROSITE:PS50159 GO:GO:0006412 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735 GO:GO:0000049
GO:GO:0019843 SUPFAM:SSF46946 eggNOG:COG0099 KO:K02952 OMA:REVAMNI
HAMAP:MF_01315 PANTHER:PTHR10871 TIGRFAMs:TIGR03631
ProtClustDB:PRK05179 PIR:D82061 RefSeq:NP_232202.1
ProteinModelPortal:Q9KP05 SMR:Q9KP05 DNASU:2615591 GeneID:2615591
KEGG:vch:VC2574 PATRIC:20084174 Uniprot:Q9KP05
Length = 118
Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
Identities = 52/115 (45%), Positives = 79/115 (68%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKIT-KDMSEEELITIRDEVS 106
AR+ G+ IP++K +L I+G+G+TR++ IL DL + + +++EE++ +RD V+
Sbjct: 2 ARIAGINIPDHKHAVIALTAIYGIGKTRSKAILADLGIAESVKISELTEEQIDQLRDGVA 61
Query: 107 KYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAI 161
KY +EGDLRR ++ I+RL ++ CYRG+RH + LP RGQ TK N RT KG R I
Sbjct: 62 KYTVEGDLRREVSMNIKRLMDLGCYRGLRHRRSLPLRGQRTKTNARTRKGPRKPI 116
>TIGR_CMR|DET_0499 [details] [associations]
symbol:DET_0499 "ribosomal protein S13" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR001892 InterPro:IPR010979 InterPro:IPR018269
InterPro:IPR019980 Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646
PROSITE:PS50159 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0000049 GO:GO:0019843
SUPFAM:SSF46946 eggNOG:COG0099 HOGENOM:HOG000039879 KO:K02952
OMA:REVAMNI HAMAP:MF_01315 PANTHER:PTHR10871 TIGRFAMs:TIGR03631
ProtClustDB:PRK05179 RefSeq:YP_181243.1 ProteinModelPortal:Q3Z956
SMR:Q3Z956 STRING:Q3Z956 GeneID:3230223 KEGG:det:DET0499
PATRIC:21608067 BioCyc:DETH243164:GJNF-499-MONOMER Uniprot:Q3Z956
Length = 129
Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
Identities = 53/118 (44%), Positives = 79/118 (66%)
Query: 49 RVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSK 107
R+ G +IP+NK++ +SLQYI G+G R+ ++LV ++ I +++EE+ +R+ + K
Sbjct: 3 RIAGTDIPDNKQVYFSLQYIFGIGPARSEKVLVQAGVDKAIRVNKLTDEEINRLREIIDK 62
Query: 108 -YMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGK 164
Y +EGDLR+ AL I+RL +I CYRG RH LP RGQ TK N RT +G R +AG+
Sbjct: 63 EYRVEGDLRKEIALNIKRLIDIGCYRGNRHKHNLPVRGQRTKTNARTRRGPRKTVAGR 120
>TIGR_CMR|SPO_0509 [details] [associations]
symbol:SPO_0509 "ribosomal protein S13" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042255 "ribosome assembly" evidence=ISS] InterPro:IPR001892
InterPro:IPR010979 InterPro:IPR018269 InterPro:IPR019980
Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 GO:GO:0000049 GO:GO:0019843 SUPFAM:SSF46946
eggNOG:COG0099 HOGENOM:HOG000039879 KO:K02952 OMA:REVAMNI
HAMAP:MF_01315 PANTHER:PTHR10871 TIGRFAMs:TIGR03631
ProtClustDB:PRK05179 RefSeq:YP_165771.1 ProteinModelPortal:Q5LW34
SMR:Q5LW34 GeneID:3195393 KEGG:sil:SPO0509 PATRIC:23374281
Uniprot:Q5LW34
Length = 122
Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
Identities = 54/121 (44%), Positives = 78/121 (64%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEV- 105
AR+ GV IP KR+ +L YI G+G T A+ I + ++ + ++S+ E++ IR+ +
Sbjct: 2 ARIAGVNIPTAKRVPIALTYITGIGNTSAKAICEAVGIDATRRVNELSDAEILAIREHID 61
Query: 106 SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
+ Y +EGDLRR + I+RL ++ CYRG+RH + LP RGQ T N RT KG AIAGKK
Sbjct: 62 ANYSVEGDLRREVQMNIKRLMDLGCYRGLRHRRNLPVRGQRTHTNARTRKGPAKAIAGKK 121
Query: 166 K 166
K
Sbjct: 122 K 122
>TIGR_CMR|CBU_0260 [details] [associations]
symbol:CBU_0260 "ribosomal protein S13/S18" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 InterPro:IPR019980 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 GO:GO:0006412
GO:GO:0005840 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0003735
GO:GO:0000049 GO:GO:0019843 SUPFAM:SSF46946 eggNOG:COG0099
HOGENOM:HOG000039879 KO:K02952 OMA:REVAMNI HAMAP:MF_01315
PANTHER:PTHR10871 TIGRFAMs:TIGR03631 ProtClustDB:PRK05179
RefSeq:NP_819304.1 ProteinModelPortal:P59753 SMR:P59753
GeneID:1208141 KEGG:cbu:CBU_0260 PATRIC:17929213
BioCyc:CBUR227377:GJ7S-267-MONOMER Uniprot:P59753
Length = 119
Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
Identities = 55/116 (47%), Positives = 77/116 (66%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME--NKITKDMSEEELITIRDEV 105
AR+ GV IP K +LQ I+G+G +RA +I + K++ K+ KD+SE EL +R EV
Sbjct: 3 ARIAGVNIPVQKHARIALQAIYGIGNSRALEICKEAKIDPATKV-KDLSEAELDALRTEV 61
Query: 106 SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAI 161
K+ +EGDLRR ++ I+R ++ Y GIRH +GLP RGQ T++N RT KGKR I
Sbjct: 62 GKFSVEGDLRRERSMDIKRKMDLGAYEGIRHRRGLPLRGQRTRSNARTRKGKRKPI 117
>TIGR_CMR|ECH_0430 [details] [associations]
symbol:ECH_0430 "ribosomal protein S13" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0042255 "ribosome assembly" evidence=ISS]
InterPro:IPR001892 InterPro:IPR010979 InterPro:IPR018269
InterPro:IPR019980 Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646
PROSITE:PS50159 EMBL:CP000236 GenomeReviews:CP000236_GR
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 GO:GO:0000049
GO:GO:0019843 SUPFAM:SSF46946 eggNOG:COG0099 HOGENOM:HOG000039879
KO:K02952 OMA:REVAMNI HAMAP:MF_01315 PANTHER:PTHR10871
TIGRFAMs:TIGR03631 ProtClustDB:PRK05179 RefSeq:YP_507248.1
ProteinModelPortal:Q2GH35 SMR:Q2GH35 STRING:Q2GH35 GeneID:3927582
KEGG:ech:ECH_0430 PATRIC:20576337
BioCyc:ECHA205920:GJNR-431-MONOMER Uniprot:Q2GH35
Length = 123
Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
Identities = 52/122 (42%), Positives = 84/122 (68%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVS 106
AR+ GV IP NKRI +L YI+G+G + A +I +++ + ++S++E+I IR+ +
Sbjct: 2 ARIAGVNIPTNKRIVIALTYIYGIGLSLANRICEGCNIDHNVRVVNLSDDEIIRIRNFIR 61
Query: 107 K-YMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGK-RVAIAGK 164
+ Y++EGDLR+ ++ I+ L +I CYRG+RH +GLP RGQ T N +T KG+ ++ +A K
Sbjct: 62 ENYIVEGDLRKEVSMNIKFLTDIGCYRGLRHRRGLPVRGQRTHTNAKTRKGRSKLPVAAK 121
Query: 165 KK 166
KK
Sbjct: 122 KK 123
>UNIPROTKB|Q9X1I5 [details] [associations]
symbol:rpsM "30S ribosomal protein S13" species:243274
"Thermotoga maritima MSB8" [GO:0003735 "structural constituent of
ribosome" evidence=IBA] [GO:0005829 "cytosol" evidence=IBA]
[GO:0006412 "translation" evidence=IBA] [GO:0015935 "small
ribosomal subunit" evidence=IBA] [GO:0042254 "ribosome biogenesis"
evidence=IBA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 InterPro:IPR019980 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 GO:GO:0005829
GO:GO:0006412 GO:GO:0042254 GO:GO:0003735 GO:GO:0000049
GO:GO:0019843 EMBL:AE000512 GenomeReviews:AE000512_GR
SUPFAM:SSF46946 GO:GO:0015935 eggNOG:COG0099 KO:K02952 OMA:REVAMNI
HAMAP:MF_01315 PANTHER:PTHR10871 TIGRFAMs:TIGR03631
ProtClustDB:PRK05179 PIR:D72247 RefSeq:NP_229275.1
ProteinModelPortal:Q9X1I5 SMR:Q9X1I5 GeneID:897029 KEGG:tma:TM1475
PATRIC:23937906 Uniprot:Q9X1I5
Length = 125
Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
Identities = 57/123 (46%), Positives = 82/123 (66%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVS 106
AR+ GVE+PNNK++ +L YI+G+GR+R+ +IL + ++ K D+++EE+ I +
Sbjct: 2 ARIVGVELPNNKKVWVALTYIYGIGRSRSFEILKNTGIDPEKRVGDLTDEEISKITKYIQ 61
Query: 107 KYM-IEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVA-IAGK 164
+ +EG+LR IRRL EI CYRGIRH GLP RGQ T++N RT KG R + I K
Sbjct: 62 DHFKVEGELRSEVERNIRRLIEIGCYRGIRHKLGLPVRGQKTRSNARTRKGPRPSRIKTK 121
Query: 165 KKA 167
KK+
Sbjct: 122 KKS 124
>UNIPROTKB|Q9XD12 [details] [associations]
symbol:rpsM "30S ribosomal protein S13" species:189518
"Leptospira interrogans serovar Lai str. 56601" [GO:0003735
"structural constituent of ribosome" evidence=IBA] [GO:0005829
"cytosol" evidence=IBA] [GO:0006412 "translation" evidence=IBA]
[GO:0015935 "small ribosomal subunit" evidence=IBA] [GO:0042254
"ribosome biogenesis" evidence=IBA] InterPro:IPR001892
InterPro:IPR010979 InterPro:IPR018269 InterPro:IPR019980
Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159
GO:GO:0005829 GO:GO:0006412 GO:GO:0042254 GO:GO:0003735
GO:GO:0000049 GO:GO:0019843 SUPFAM:SSF46946 GO:GO:0015935
EMBL:AE010300 GenomeReviews:AE010300_GR eggNOG:COG0099
HOGENOM:HOG000039879 KO:K02952 OMA:REVAMNI HAMAP:MF_01315
PANTHER:PTHR10871 TIGRFAMs:TIGR03631 ProtClustDB:PRK05179
EMBL:AF115283 RefSeq:NP_710943.1 ProteinModelPortal:Q9XD12
SMR:Q9XD12 PaxDb:Q9XD12 PRIDE:Q9XD12 GeneID:1150105
KEGG:lil:LA_0762 PATRIC:22382384 BioCyc:LINT189518:GJBB-621-MONOMER
Uniprot:Q9XD12
Length = 125
Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
Identities = 53/126 (42%), Positives = 77/126 (61%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIR---D 103
AR+ G+++P KRI L YI G+G + ++ IL ++ I KD++E + IR +
Sbjct: 2 ARIAGIDLPREKRIVVGLTYIFGIGNSLSKLILKKAGIDESIRVKDLNESQEAAIRKTLE 61
Query: 104 EVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAG 163
E +K +EGDLR L I+RL +I CYRG+RH +GLP GQ T+ N RT KG + +A
Sbjct: 62 ETAK--VEGDLRSEIQLNIKRLMDIGCYRGLRHRRGLPVNGQRTRTNARTRKGGKKTVAN 119
Query: 164 KKKAPR 169
KKK +
Sbjct: 120 KKKVTK 125
>TIGR_CMR|APH_0301 [details] [associations]
symbol:APH_0301 "ribosomal protein S13" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042255 "ribosome assembly" evidence=ISS] InterPro:IPR001892
InterPro:IPR010979 InterPro:IPR018269 InterPro:IPR019980
Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0000049 GO:GO:0019843
SUPFAM:SSF46946 eggNOG:COG0099 HOGENOM:HOG000039879 KO:K02952
OMA:REVAMNI HAMAP:MF_01315 PANTHER:PTHR10871 TIGRFAMs:TIGR03631
RefSeq:YP_504913.1 ProteinModelPortal:Q2GL38 SMR:Q2GL38
STRING:Q2GL38 GeneID:3931105 KEGG:aph:APH_0301 PATRIC:20949176
ProtClustDB:PRK05179 BioCyc:APHA212042:GHPM-331-MONOMER
Uniprot:Q2GL38
Length = 123
Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
Identities = 51/122 (41%), Positives = 80/122 (65%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEV- 105
AR+GGV +P +KR+ +L YI+G+G + A +I ++ + +SEE+++ IR+ +
Sbjct: 2 ARIGGVNVPVDKRVVVALTYIYGIGTSLANRICEGCGIDKNVRVSALSEEDVVKIRNFIR 61
Query: 106 SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKG-KRVAIAGK 164
+ ++E DLR+ A+ I+ L +I CYRG+RH + LP RGQ T N RT KG R+A+A K
Sbjct: 62 AGCVVEADLRKEVAMNIKFLMDIGCYRGLRHRKKLPVRGQRTHTNARTRKGGSRLAVAAK 121
Query: 165 KK 166
KK
Sbjct: 122 KK 123
>UNIPROTKB|Q3KLI8 [details] [associations]
symbol:rpsM "30S ribosomal protein S13" species:315277
"Chlamydia trachomatis A/HAR-13" [GO:0003735 "structural
constituent of ribosome" evidence=IBA] [GO:0005829 "cytosol"
evidence=IBA] [GO:0006412 "translation" evidence=IBA] [GO:0015935
"small ribosomal subunit" evidence=IBA] [GO:0042254 "ribosome
biogenesis" evidence=IBA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 InterPro:IPR019980 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 GO:GO:0005829
GO:GO:0006412 GO:GO:0042254 GO:GO:0003735 GO:GO:0000049
GO:GO:0019843 EMBL:CP000051 GenomeReviews:CP000051_GR
SUPFAM:SSF46946 GO:GO:0015935 eggNOG:COG0099 HOGENOM:HOG000039879
KO:K02952 OMA:REVAMNI HAMAP:MF_01315 PANTHER:PTHR10871
TIGRFAMs:TIGR03631 ProtClustDB:PRK05179 RefSeq:YP_328332.1
ProteinModelPortal:Q3KLI8 SMR:Q3KLI8 STRING:Q3KLI8 GeneID:3687704
KEGG:cta:CTA_0558 PATRIC:32023022
BioCyc:CTRA315277:GI4C-584-MONOMER Uniprot:Q3KLI8
Length = 122
Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
Identities = 52/120 (43%), Positives = 77/120 (64%)
Query: 49 RVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEV-S 106
R+ G++IP K+++ SL YI+G+G +++I+ L++ + +++EEE+ + + S
Sbjct: 3 RIIGIDIPAKKKLKISLTYIYGIGPALSKEIIARLQLNPEARAAELTEEEVGRLNALLQS 62
Query: 107 KYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 166
Y++EGDLRR I+RL I YRG RH LP RGQ TK N RT KGKR +AGKKK
Sbjct: 63 DYVVEGDLRRRVQSDIKRLITIHAYRGQRHRLSLPVRGQRTKTNSRTRKGKRKTVAGKKK 122
>TIGR_CMR|CPS_0623 [details] [associations]
symbol:CPS_0623 "ribosomal protein S13" species:167879
"Colwellia psychrerythraea 34H" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR001892
InterPro:IPR010979 InterPro:IPR018269 InterPro:IPR019980
Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159
GO:GO:0006412 GO:GO:0005840 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0003735 GO:GO:0000049 GO:GO:0019843 SUPFAM:SSF46946
eggNOG:COG0099 HOGENOM:HOG000039879 KO:K02952 OMA:REVAMNI
HAMAP:MF_01315 PANTHER:PTHR10871 TIGRFAMs:TIGR03631
ProtClustDB:PRK05179 RefSeq:YP_267373.1 ProteinModelPortal:Q488Z1
SMR:Q488Z1 STRING:Q488Z1 PRIDE:Q488Z1 GeneID:3519508
KEGG:cps:CPS_0623 PATRIC:21464573
BioCyc:CPSY167879:GI48-710-MONOMER Uniprot:Q488Z1
Length = 118
Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
Identities = 49/115 (42%), Positives = 72/115 (62%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVS 106
AR+ G+ IP+ K ++ I+G+G TRA+ I + E+ ++ E ++ +R EV
Sbjct: 2 ARIAGINIPDRKHAVIAITAIYGIGATRAKAICAATGIAESTKISELDEAKIDLLRAEVD 61
Query: 107 KYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAI 161
K+ +EGDLRR ++ I+RL ++ CYRGIRH + LP RGQ TK N RT KG R I
Sbjct: 62 KFTVEGDLRREVSMNIKRLMDLGCYRGIRHRRSLPLRGQRTKTNARTRKGPRKPI 116
>TIGR_CMR|NSE_0287 [details] [associations]
symbol:NSE_0287 "ribosomal protein S13" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0042255 "ribosome assembly" evidence=ISS]
InterPro:IPR001892 InterPro:IPR010979 InterPro:IPR018269
InterPro:IPR019980 Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646
PROSITE:PS50159 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0000049 GO:GO:0019843 EMBL:CP000237 GenomeReviews:CP000237_GR
SUPFAM:SSF46946 eggNOG:COG0099 HOGENOM:HOG000039879 KO:K02952
OMA:REVAMNI HAMAP:MF_01315 PANTHER:PTHR10871 TIGRFAMs:TIGR03631
ProtClustDB:PRK05179 RefSeq:YP_506178.1 ProteinModelPortal:Q2GEB8
SMR:Q2GEB8 STRING:Q2GEB8 PRIDE:Q2GEB8 GeneID:3932234
KEGG:nse:NSE_0287 PATRIC:22680667
BioCyc:NSEN222891:GHFU-314-MONOMER Uniprot:Q2GEB8
Length = 123
Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
Identities = 49/118 (41%), Positives = 75/118 (63%)
Query: 52 GVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKIT-KDMSEEELITIRDEVSKYM- 109
GV +P+NK + +L Y++G+G AR+I L ++ D+ +E+L +I + +
Sbjct: 5 GVNLPDNKAVVVALTYLYGIGLPTARKICSSLAIDGSAKLPDLEQEQLNSIMAYIKNDIP 64
Query: 110 IEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGK-RVAIAGKKK 166
EG+LR+ A +I+ L +I+CYRG+RH + LP RGQ T+ N RT KGK RV IA KK+
Sbjct: 65 FEGELRKSVAFSIKHLVDIKCYRGVRHRKNLPVRGQRTRTNARTRKGKVRVPIAAKKR 122
>POMBASE|SPCC1795.07 [details] [associations]
symbol:SPCC1795.07 "mitochondrial ribosomal protein
subunit S37 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003735 "structural constituent of ribosome" evidence=ISO]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005763 "mitochondrial small ribosomal subunit"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0019843 "rRNA
binding" evidence=IEA] [GO:0032543 "mitochondrial translation"
evidence=ISO] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646
PROSITE:PS50159 PomBase:SPCC1795.07 GO:GO:0005829 GO:GO:0005634
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0003735 GO:GO:0032543
GO:GO:0019843 GO:GO:0005763 SUPFAM:SSF46946 eggNOG:COG0099
KO:K02952 HAMAP:MF_01315 PANTHER:PTHR10871 HOGENOM:HOG000039878
OMA:RSATTLF PIR:T41136 RefSeq:NP_588037.1 ProteinModelPortal:O59772
STRING:O59772 EnsemblFungi:SPCC1795.07.1 GeneID:2538943
KEGG:spo:SPCC1795.07 OrthoDB:EOG4WHCWG NextBio:20800119
Uniprot:O59772
Length = 151
Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
Identities = 39/105 (37%), Positives = 63/105 (60%)
Query: 52 GVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMI 110
GV + ++K + ++L +G+G +A +I L N + ++++ +L T+ +S I
Sbjct: 6 GVAVNDDKPVRFALLSFYGIGHAKAEEICAKLSFHNTLRVRELTNVQLTTLSQLLSGMTI 65
Query: 111 EGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLK 155
EGDLRR I RL I+CYRG+RH+ GLP GQ+T+ N +T K
Sbjct: 66 EGDLRRQRNADISRLVNIRCYRGMRHVNGLPVNGQNTRTNAKTAK 110
>ASPGD|ASPL0000076821 [details] [associations]
symbol:AN4468 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0042173 "regulation of
sporulation resulting in formation of a cellular spore"
evidence=IEA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646
PROSITE:PS50159 GO:GO:0006412 GO:GO:0003723 GO:GO:0005840
GO:GO:0003735 EMBL:BN001303 SUPFAM:SSF46946 PANTHER:PTHR10871
OMA:RSATTLF EnsemblFungi:CADANIAT00005983 Uniprot:C8V8H2
Length = 119
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 36/100 (36%), Positives = 55/100 (55%)
Query: 52 GVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMI 110
GV P + ++ SLQ GVG + +I+ + +++ ++++ + +S+ I
Sbjct: 6 GVNFPEGQLVQKSLQKFFGVGPQVSSRIMSRFHIHQTCKVGELANKQVLDLTAVLSEMKI 65
Query: 111 EGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNN 150
E DLRR I+RLKE YRG RH GLP RGQ T+NN
Sbjct: 66 ENDLRRQVLDDIKRLKETGTYRGRRHALGLPVRGQRTRNN 105
>UNIPROTKB|Q3T0R1 [details] [associations]
symbol:RPS18 "40S ribosomal protein S18" species:9913 "Bos
taurus" [GO:0015935 "small ribosomal subunit" evidence=ISS;IBA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=IBA] [GO:0006412
"translation" evidence=IBA] [GO:0005829 "cytosol" evidence=IBA]
[GO:0003735 "structural constituent of ribosome" evidence=IBA]
[GO:0019843 "rRNA binding" evidence=IEA] InterPro:IPR001892
InterPro:IPR010979 InterPro:IPR018269 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 GO:GO:0006412
GO:GO:0042254 GO:GO:0003735 GO:GO:0019843 GO:GO:0022627
SUPFAM:SSF46946 eggNOG:COG0099 HAMAP:MF_01315 PANTHER:PTHR10871
OMA:FQHILRI HOGENOM:HOG000039877 KO:K02964
GeneTree:ENSGT00390000012691 EMBL:BC102293 IPI:IPI00689850
RefSeq:NP_001028786.1 UniGene:Bt.15275 ProteinModelPortal:Q3T0R1
SMR:Q3T0R1 STRING:Q3T0R1 PRIDE:Q3T0R1 Ensembl:ENSBTAT00000003431
GeneID:326602 KEGG:bta:326602 CTD:6222 HOVERGEN:HBG000200
InParanoid:Q3T0R1 OrthoDB:EOG4KSPM2 NextBio:20809664
ArrayExpress:Q3T0R1 Uniprot:Q3T0R1
Length = 152
Score = 105 (42.0 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 21/44 (47%), Positives = 30/44 (68%)
Query: 122 IRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
+ RLK+I+ +RG+RH GL RGQHTK R +G+ V ++ KK
Sbjct: 111 LERLKKIRAHRGLRHFWGLRVRGQHTKTTGR--RGRTVGVSKKK 152
Score = 70 (29.7 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 22/67 (32%), Positives = 34/67 (50%)
Query: 49 RVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL----VDL-KMENKITKDMSEEELITIRD 103
RV I ++I +++ I GVGR A +L +DL K ++T+D E +ITI
Sbjct: 14 RVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTED-EVERVITIMQ 72
Query: 104 EVSKYMI 110
+Y I
Sbjct: 73 NPRQYKI 79
>UNIPROTKB|Q5TJE9 [details] [associations]
symbol:RPS18 "40S ribosomal protein S18" species:9615
"Canis lupus familiaris" [GO:0022627 "cytosolic small ribosomal
subunit" evidence=ISS] [GO:0015935 "small ribosomal subunit"
evidence=ISS;IBA] [GO:0042254 "ribosome biogenesis" evidence=IBA]
[GO:0006412 "translation" evidence=IBA] [GO:0005829 "cytosol"
evidence=IBA] [GO:0003735 "structural constituent of ribosome"
evidence=IBA] [GO:0019843 "rRNA binding" evidence=IEA]
InterPro:IPR001892 InterPro:IPR010979 InterPro:IPR018269
Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159
GO:GO:0006412 GO:GO:0042254 GO:GO:0003735 GO:GO:0019843
EMBL:AJ630366 GO:GO:0022627 SUPFAM:SSF46946 eggNOG:COG0099
HAMAP:MF_01315 PANTHER:PTHR10871 PDB:2ZKQ PDBsum:2ZKQ OMA:FQHILRI
HOGENOM:HOG000039877 KO:K02964 GeneTree:ENSGT00390000012691
CTD:6222 HOVERGEN:HBG000200 OrthoDB:EOG4KSPM2 RefSeq:NP_001041547.1
UniGene:Cfa.6430 ProteinModelPortal:Q5TJE9 SMR:Q5TJE9 STRING:Q5TJE9
PRIDE:Q5TJE9 Ensembl:ENSCAFT00000001473 GeneID:403685
KEGG:cfa:403685 InParanoid:Q5TJE9 EvolutionaryTrace:Q5TJE9
NextBio:20817189 Uniprot:Q5TJE9
Length = 152
Score = 105 (42.0 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 21/44 (47%), Positives = 30/44 (68%)
Query: 122 IRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
+ RLK+I+ +RG+RH GL RGQHTK R +G+ V ++ KK
Sbjct: 111 LERLKKIRAHRGLRHFWGLRVRGQHTKTTGR--RGRTVGVSKKK 152
Score = 70 (29.7 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 22/67 (32%), Positives = 34/67 (50%)
Query: 49 RVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL----VDL-KMENKITKDMSEEELITIRD 103
RV I ++I +++ I GVGR A +L +DL K ++T+D E +ITI
Sbjct: 14 RVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTED-EVERVITIMQ 72
Query: 104 EVSKYMI 110
+Y I
Sbjct: 73 NPRQYKI 79
>UNIPROTKB|P62269 [details] [associations]
symbol:RPS18 "40S ribosomal protein S18" species:9606 "Homo
sapiens" [GO:0019843 "rRNA binding" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IBA] [GO:0005829
"cytosol" evidence=IBA;TAS] [GO:0006412 "translation"
evidence=IC;IBA;TAS] [GO:0015935 "small ribosomal subunit"
evidence=IDA;IBA] [GO:0042254 "ribosome biogenesis" evidence=IBA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005840
"ribosome" evidence=NAS] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=TAS]
[GO:0006413 "translational initiation" evidence=TAS] [GO:0006414
"translational elongation" evidence=TAS] [GO:0006415 "translational
termination" evidence=TAS] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0016071 "mRNA metabolic process" evidence=TAS]
[GO:0019058 "viral infectious cycle" evidence=TAS] [GO:0019083
"viral transcription" evidence=TAS] [GO:0044267 "cellular protein
metabolic process" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 Reactome:REACT_17015 InterPro:IPR001892
InterPro:IPR010979 InterPro:IPR018269 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159
Reactome:REACT_116125 EMBL:CH471081 GO:GO:0000184 GO:GO:0006413
GO:GO:0042254 GO:GO:0003735 GO:GO:0019843 EMBL:AL031228
EMBL:AL645940 EMBL:AL844527 EMBL:AL662827 EMBL:AL662820
EMBL:CR759817 EMBL:CR759786 GO:GO:0006415 EMBL:AL713971
GO:GO:0006414 GO:GO:0022627 Reactome:REACT_1762 SUPFAM:SSF46946
GO:GO:0006614 GO:GO:0019083 eggNOG:COG0099 HAMAP:MF_01315
PANTHER:PTHR10871 OMA:FQHILRI HOGENOM:HOG000039877 KO:K02964
CTD:6222 HOVERGEN:HBG000200 OrthoDB:EOG4KSPM2 EMBL:X69150
EMBL:BC101786 EMBL:BC101788 EMBL:BC106063 IPI:IPI00013296
PIR:S30393 RefSeq:NP_072045.1 UniGene:Hs.448854 UniGene:Hs.627414
ProteinModelPortal:P62269 SMR:P62269 IntAct:P62269
MINT:MINT-1151113 STRING:P62269 PhosphoSite:P62269 DMDM:50403625
PaxDb:P62269 PeptideAtlas:P62269 PRIDE:P62269
Ensembl:ENST00000211372 Ensembl:ENST00000434122
Ensembl:ENST00000439602 Ensembl:ENST00000454021
Ensembl:ENST00000457341 GeneID:6222 KEGG:hsa:6222 UCSC:uc003odp.1
GeneCards:GC06P033240 HGNC:HGNC:10401 HPA:HPA050159 MIM:180473
neXtProt:NX_P62269 PharmGKB:PA34801 InParanoid:P62269
PhylomeDB:P62269 GenomeRNAi:6222 NextBio:24155 ArrayExpress:P62269
Bgee:P62269 CleanEx:HS_RPS18 Genevestigator:P62269
GermOnline:ENSG00000182498 Uniprot:P62269
Length = 152
Score = 105 (42.0 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 21/44 (47%), Positives = 30/44 (68%)
Query: 122 IRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
+ RLK+I+ +RG+RH GL RGQHTK R +G+ V ++ KK
Sbjct: 111 LERLKKIRAHRGLRHFWGLRVRGQHTKTTGR--RGRTVGVSKKK 152
Score = 70 (29.7 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 22/67 (32%), Positives = 34/67 (50%)
Query: 49 RVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL----VDL-KMENKITKDMSEEELITIRD 103
RV I ++I +++ I GVGR A +L +DL K ++T+D E +ITI
Sbjct: 14 RVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTED-EVERVITIMQ 72
Query: 104 EVSKYMI 110
+Y I
Sbjct: 73 NPRQYKI 79
>UNIPROTKB|P62272 [details] [associations]
symbol:RPS18 "40S ribosomal protein S18" species:9823 "Sus
scrofa" [GO:0015935 "small ribosomal subunit" evidence=ISS]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS]
[GO:0019843 "rRNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646
PROSITE:PS50159 GO:GO:0006412 GO:GO:0003735 GO:GO:0019843
GO:GO:0022627 SUPFAM:SSF46946 eggNOG:COG0099 HAMAP:MF_01315
PANTHER:PTHR10871 OMA:FQHILRI HOGENOM:HOG000039877 KO:K02964
GeneTree:ENSGT00390000012691 CTD:6222 HOVERGEN:HBG000200
OrthoDB:EOG4KSPM2 EMBL:AB000911 RefSeq:NP_999105.1
UniGene:Ssc.53782 ProteinModelPortal:P62272 SMR:P62272
STRING:P62272 PRIDE:P62272 Ensembl:ENSSSCT00000001675 GeneID:396980
KEGG:ssc:396980 Uniprot:P62272
Length = 152
Score = 105 (42.0 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 21/44 (47%), Positives = 30/44 (68%)
Query: 122 IRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
+ RLK+I+ +RG+RH GL RGQHTK R +G+ V ++ KK
Sbjct: 111 LERLKKIRAHRGLRHFWGLRVRGQHTKTTGR--RGRTVGVSKKK 152
Score = 70 (29.7 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 22/67 (32%), Positives = 34/67 (50%)
Query: 49 RVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL----VDL-KMENKITKDMSEEELITIRD 103
RV I ++I +++ I GVGR A +L +DL K ++T+D E +ITI
Sbjct: 14 RVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTED-EVERVITIMQ 72
Query: 104 EVSKYMI 110
+Y I
Sbjct: 73 NPRQYKI 79
>MGI|MGI:98146 [details] [associations]
symbol:Rps18 "ribosomal protein S18" species:10090 "Mus
musculus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IBA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005829 "cytosol"
evidence=IBA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IBA] [GO:0015935 "small ribosomal subunit"
evidence=ISO;IBA] [GO:0019843 "rRNA binding" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IBA] InterPro:IPR001892
InterPro:IPR010979 InterPro:IPR018269 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 MGI:MGI:98146
GO:GO:0005829 GO:GO:0006412 GO:GO:0042254 GO:GO:0003735
GO:GO:0019843 EMBL:AF110520 EMBL:AF100956 SUPFAM:SSF46946
GO:GO:0015935 eggNOG:COG0099 HAMAP:MF_01315 PANTHER:PTHR10871
OMA:FQHILRI HOGENOM:HOG000039877 KO:K02964 CTD:6222
HOVERGEN:HBG000200 OrthoDB:EOG4KSPM2 EMBL:M76763 EMBL:M76762
EMBL:AK050626 EMBL:BC081459 EMBL:BC081458 IPI:IPI00317590
PIR:I76666 RefSeq:NP_035426.1 UniGene:Mm.298745 UniGene:Mm.324762
UniGene:Mm.440079 ProteinModelPortal:P62270 SMR:P62270
IntAct:P62270 STRING:P62270 PhosphoSite:P62270 PaxDb:P62270
PRIDE:P62270 Ensembl:ENSMUST00000008812 GeneID:20084 KEGG:mmu:20084
InParanoid:P62270 NextBio:297575 Bgee:P62270 CleanEx:MM_RPS18
Genevestigator:P62270 GermOnline:ENSMUSG00000008668 Uniprot:P62270
Length = 152
Score = 105 (42.0 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 21/44 (47%), Positives = 30/44 (68%)
Query: 122 IRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
+ RLK+I+ +RG+RH GL RGQHTK R +G+ V ++ KK
Sbjct: 111 LERLKKIRAHRGLRHFWGLRVRGQHTKTTGR--RGRTVGVSKKK 152
Score = 70 (29.7 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 22/67 (32%), Positives = 34/67 (50%)
Query: 49 RVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL----VDL-KMENKITKDMSEEELITIRD 103
RV I ++I +++ I GVGR A +L +DL K ++T+D E +ITI
Sbjct: 14 RVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTED-EVERVITIMQ 72
Query: 104 EVSKYMI 110
+Y I
Sbjct: 73 NPRQYKI 79
>RGD|3595 [details] [associations]
symbol:Rps18 "ribosomal protein S18" species:10116 "Rattus
norvegicus" [GO:0003735 "structural constituent of ribosome"
evidence=IBA;TAS] [GO:0006412 "translation" evidence=IBA] [GO:0006417
"regulation of translation" evidence=NAS] [GO:0015935 "small
ribosomal subunit" evidence=ISO;TAS] [GO:0019843 "rRNA binding"
evidence=IEA] [GO:0022627 "cytosolic small ribosomal subunit"
evidence=ISO;IDA] [GO:0042254 "ribosome biogenesis" evidence=IBA]
InterPro:IPR001892 InterPro:IPR010979 InterPro:IPR018269 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 RGD:3595
GO:GO:0006417 GO:GO:0006412 GO:GO:0042254 GO:GO:0003735 GO:GO:0019843
EMBL:BX883042 GO:GO:0022627 SUPFAM:SSF46946 eggNOG:COG0099
HAMAP:MF_01315 PANTHER:PTHR10871 OMA:FQHILRI HOGENOM:HOG000039877
KO:K02964 GeneTree:ENSGT00390000012691 CTD:6222 HOVERGEN:HBG000200
OrthoDB:EOG4KSPM2 EMBL:X57529 EMBL:BC126072 IPI:IPI00188058
PIR:JH0419 RefSeq:NP_998722.1 RefSeq:XP_002724624.1
RefSeq:XP_002727879.1 UniGene:Rn.199092 UniGene:Rn.42766
ProteinModelPortal:P62271 SMR:P62271 IntAct:P62271 STRING:P62271
PRIDE:P62271 Ensembl:ENSRNOT00000037499 Ensembl:ENSRNOT00000046010
GeneID:100360679 GeneID:294282 KEGG:rno:100360679 KEGG:rno:294282
UCSC:RGD:3595 InParanoid:P62271 NextBio:637886 Genevestigator:P62271
GermOnline:ENSRNOG00000033152 Uniprot:P62271
Length = 152
Score = 105 (42.0 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 21/44 (47%), Positives = 30/44 (68%)
Query: 122 IRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
+ RLK+I+ +RG+RH GL RGQHTK R +G+ V ++ KK
Sbjct: 111 LERLKKIRAHRGLRHFWGLRVRGQHTKTTGR--RGRTVGVSKKK 152
Score = 70 (29.7 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 22/67 (32%), Positives = 34/67 (50%)
Query: 49 RVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL----VDL-KMENKITKDMSEEELITIRD 103
RV I ++I +++ I GVGR A +L +DL K ++T+D E +ITI
Sbjct: 14 RVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTED-EVERVITIMQ 72
Query: 104 EVSKYMI 110
+Y I
Sbjct: 73 NPRQYKI 79
>WB|WBGene00004487 [details] [associations]
symbol:rps-18 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0000003 "reproduction"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646
PROSITE:PS50159 GO:GO:0005829 GO:GO:0006898 GO:GO:0006412
EMBL:Z99281 GO:GO:0000003 GO:GO:0042254 GO:GO:0003723 GO:GO:0003735
SUPFAM:SSF46946 GO:GO:0015935 eggNOG:COG0099 PANTHER:PTHR10871
OMA:FQHILRI HOGENOM:HOG000039877 KO:K02964
GeneTree:ENSGT00390000012691 PIR:T27228 RefSeq:NP_502794.1
ProteinModelPortal:O18240 SMR:O18240 DIP:DIP-25985N
MINT:MINT-1089736 STRING:O18240 PaxDb:O18240
EnsemblMetazoa:Y57G11C.16.1 EnsemblMetazoa:Y57G11C.16.2
GeneID:178408 KEGG:cel:CELE_Y57G11C.16 UCSC:Y57G11C.16.1 CTD:178408
WormBase:Y57G11C.16 InParanoid:O18240 NextBio:901012 Uniprot:O18240
Length = 154
Score = 104 (41.7 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 21/44 (47%), Positives = 30/44 (68%)
Query: 122 IRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
+ R+K+I+ +RG+RH GL RGQHTK R KG+ V ++ KK
Sbjct: 111 LERMKKIRLHRGLRHYWGLRVRGQHTKTTGR--KGRTVGVSKKK 152
Score = 74 (31.1 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 24/69 (34%), Positives = 37/69 (53%)
Query: 49 RVGGVEIPNNKRIEYSLQYIHGVGRTRA----RQILVDLKMENKITKDMSEEE---LITI 101
RV I N+++ Y+L I GVGR A R+ VD+ NK +++EE+ ++TI
Sbjct: 14 RVMNTNIDGNRKVPYALTAIKGVGRRFAFVCCRKADVDV---NKRAGELTEEDFDKIVTI 70
Query: 102 RDEVSKYMI 110
S+Y I
Sbjct: 71 MQNPSQYKI 79
>UNIPROTKB|O18240 [details] [associations]
symbol:rps-18 "Protein RPS-18" species:6239 "Caenorhabditis
elegans" [GO:0042254 "ribosome biogenesis" evidence=IBA]
[GO:0015935 "small ribosomal subunit" evidence=IBA] [GO:0006412
"translation" evidence=IBA] [GO:0005829 "cytosol" evidence=IBA]
[GO:0003735 "structural constituent of ribosome" evidence=IBA]
InterPro:IPR001892 InterPro:IPR010979 InterPro:IPR018269
Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159
GO:GO:0005829 GO:GO:0006898 GO:GO:0006412 EMBL:Z99281 GO:GO:0000003
GO:GO:0042254 GO:GO:0003723 GO:GO:0003735 SUPFAM:SSF46946
GO:GO:0015935 eggNOG:COG0099 PANTHER:PTHR10871 OMA:FQHILRI
HOGENOM:HOG000039877 KO:K02964 GeneTree:ENSGT00390000012691
PIR:T27228 RefSeq:NP_502794.1 ProteinModelPortal:O18240 SMR:O18240
DIP:DIP-25985N MINT:MINT-1089736 STRING:O18240 PaxDb:O18240
EnsemblMetazoa:Y57G11C.16.1 EnsemblMetazoa:Y57G11C.16.2
GeneID:178408 KEGG:cel:CELE_Y57G11C.16 UCSC:Y57G11C.16.1 CTD:178408
WormBase:Y57G11C.16 InParanoid:O18240 NextBio:901012 Uniprot:O18240
Length = 154
Score = 104 (41.7 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 21/44 (47%), Positives = 30/44 (68%)
Query: 122 IRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
+ R+K+I+ +RG+RH GL RGQHTK R KG+ V ++ KK
Sbjct: 111 LERMKKIRLHRGLRHYWGLRVRGQHTKTTGR--KGRTVGVSKKK 152
Score = 74 (31.1 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 24/69 (34%), Positives = 37/69 (53%)
Query: 49 RVGGVEIPNNKRIEYSLQYIHGVGRTRA----RQILVDLKMENKITKDMSEEE---LITI 101
RV I N+++ Y+L I GVGR A R+ VD+ NK +++EE+ ++TI
Sbjct: 14 RVMNTNIDGNRKVPYALTAIKGVGRRFAFVCCRKADVDV---NKRAGELTEEDFDKIVTI 70
Query: 102 RDEVSKYMI 110
S+Y I
Sbjct: 71 MQNPSQYKI 79
>UNIPROTKB|Q90YQ5 [details] [associations]
symbol:rps18 "40S ribosomal protein S18" species:7998
"Ictalurus punctatus" [GO:0015935 "small ribosomal subunit"
evidence=ISS] [GO:0022627 "cytosolic small ribosomal subunit"
evidence=ISS] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646
PROSITE:PS50159 GO:GO:0006412 GO:GO:0003735 GO:GO:0019843
GO:GO:0022627 SUPFAM:SSF46946 HAMAP:MF_01315 PANTHER:PTHR10871
HOVERGEN:HBG000200 EMBL:AF402827 RefSeq:NP_001187081.1
UniGene:Ipu.133 ProteinModelPortal:Q90YQ5 SMR:Q90YQ5 PRIDE:Q90YQ5
GeneID:100304570 Uniprot:Q90YQ5
Length = 152
Score = 105 (42.0 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 21/44 (47%), Positives = 30/44 (68%)
Query: 122 IRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
+ RLK+I+ +RG+RH GL RGQHTK R +G+ V ++ KK
Sbjct: 111 LERLKKIRAHRGLRHFWGLRVRGQHTKTTGR--RGRTVGVSKKK 152
Score = 69 (29.3 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 21/67 (31%), Positives = 34/67 (50%)
Query: 49 RVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL----VDL-KMENKITKDMSEEELITIRD 103
RV I ++I +++ I GVGR A +L +DL K ++T+D E ++TI
Sbjct: 14 RVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLSKRAGELTED-EVERVVTIMQ 72
Query: 104 EVSKYMI 110
+Y I
Sbjct: 73 NPRQYKI 79
>ZFIN|ZDB-GENE-020419-20 [details] [associations]
symbol:rps18 "ribosomal protein S18" species:7955
"Danio rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA;IBA] [GO:0006412
"translation" evidence=IEA;IBA] [GO:0015935 "small ribosomal
subunit" evidence=IBA] [GO:0042254 "ribosome biogenesis"
evidence=IBA] [GO:0005829 "cytosol" evidence=IBA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0019843
"rRNA binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0051726 "regulation of cell cycle" evidence=IMP]
InterPro:IPR001892 InterPro:IPR010979 InterPro:IPR018269
Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159
ZFIN:ZDB-GENE-020419-20 GO:GO:0007275 GO:GO:0005829 GO:GO:0006412
GO:GO:0042254 GO:GO:0051726 GO:GO:0003735 GO:GO:0019843
SUPFAM:SSF46946 GO:GO:0015935 eggNOG:COG0099 HAMAP:MF_01315
PANTHER:PTHR10871 HOGENOM:HOG000039877 KO:K02964
GeneTree:ENSGT00390000012691 CTD:6222 HOVERGEN:HBG000200
OrthoDB:EOG4KSPM2 EMBL:AY099517 EMBL:BC062289 EMBL:AF210641
IPI:IPI00490073 RefSeq:NP_775341.1 UniGene:Dr.76001
ProteinModelPortal:Q8JGS9 SMR:Q8JGS9 STRING:Q8JGS9 PRIDE:Q8JGS9
Ensembl:ENSDART00000017975 GeneID:192300 KEGG:dre:192300
InParanoid:Q8JGS9 NextBio:20797141 ArrayExpress:Q8JGS9 Bgee:Q8JGS9
Uniprot:Q8JGS9
Length = 152
Score = 105 (42.0 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 21/44 (47%), Positives = 30/44 (68%)
Query: 122 IRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
+ RLK+I+ +RG+RH GL RGQHTK R +G+ V ++ KK
Sbjct: 111 LERLKKIRAHRGLRHFWGLRVRGQHTKTTGR--RGRTVGVSKKK 152
Score = 69 (29.3 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 21/67 (31%), Positives = 34/67 (50%)
Query: 49 RVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL----VDL-KMENKITKDMSEEELITIRD 103
RV I ++I +++ I GVGR A +L +DL K ++T+D E ++TI
Sbjct: 14 RVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLNKRAGELTED-EVERVVTIMQ 72
Query: 104 EVSKYMI 110
+Y I
Sbjct: 73 NPRQYKI 79
>UNIPROTKB|Q7S2C2 [details] [associations]
symbol:NCU09539 "Putative uncharacterized protein"
species:367110 "Neurospora crassa OR74A" [GO:0003735 "structural
constituent of ribosome" evidence=IBA] [GO:0005739 "mitochondrion"
evidence=IBA] [GO:0006412 "translation" evidence=IBA] [GO:0015935
"small ribosomal subunit" evidence=IBA] [GO:0042254 "ribosome
biogenesis" evidence=IBA] [GO:0005829 "cytosol" evidence=IBA]
InterPro:IPR001892 InterPro:IPR010979 InterPro:IPR018269
Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159
GO:GO:0005739 GO:GO:0006412 GO:GO:0042254 GO:GO:0003723
GO:GO:0003735 SUPFAM:SSF46946 GO:GO:0015935 eggNOG:COG0099
KO:K02952 PANTHER:PTHR10871 HOGENOM:HOG000039878 OrthoDB:EOG4WHCWG
OMA:MTIEGDA EMBL:AABX02000041 RefSeq:XP_958758.1
ProteinModelPortal:Q7S2C2 STRING:Q7S2C2
EnsemblFungi:EFNCRT00000007552 GeneID:3874905 KEGG:ncr:NCU09539
Uniprot:Q7S2C2
Length = 119
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 35/107 (32%), Positives = 57/107 (53%)
Query: 52 GVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELIT-IRDEVSKYMI 110
GV +K ++ +L+ +G+G+ + +IL + + +++T + E+S I
Sbjct: 6 GVNFNEHKLVQKALESFYGLGQQASARILAKYSIHPRAKMGTLPPKIVTALTAELSTMTI 65
Query: 111 EGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKN---NCRTL 154
E D RR I+RL+++ YRG RH GLP RGQ T+N N R L
Sbjct: 66 ENDARRLVLDNIKRLRDMGTYRGRRHAMGLPVRGQQTRNQIANARKL 112
>UNIPROTKB|Q8HCP0 [details] [associations]
symbol:rps13 "Ribosomal protein S13" species:39947 "Oryza
sativa Japonica Group" [GO:0003735 "structural constituent of
ribosome" evidence=IBA] [GO:0005739 "mitochondrion"
evidence=IC;IBA] [GO:0006412 "translation" evidence=IBA]
[GO:0015935 "small ribosomal subunit" evidence=IBA] [GO:0042254
"ribosome biogenesis" evidence=IBA] [GO:0005829 "cytosol"
evidence=IBA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646
PROSITE:PS50159 GO:GO:0005739 GO:GO:0006412 GO:GO:0042254
GO:GO:0003723 GO:GO:0003735 EMBL:BA000029 GenomeReviews:BA000029_GR
SUPFAM:SSF46946 GO:GO:0015935 KO:K02952 PANTHER:PTHR10871
RefSeq:YP_002000577.1 ProteinModelPortal:Q8HCP0 STRING:Q8HCP0
GeneID:6450193 KEGG:osa:6450193 Gramene:Q8HCP0 Uniprot:Q8HCP0
Length = 116
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 32/106 (30%), Positives = 58/106 (54%)
Query: 52 GVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKIT-KDMSEEELITIRDEVSK-YM 109
G + ++++ +L + G+G +A Q+ L + I ++++ ++ I +++ ++
Sbjct: 6 GARLLPDEQVRIALTKMDGIGPKKAIQLCYRLGISGNIKMNELTKYQIDQIEQMIAQDHV 65
Query: 110 IEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLK 155
+ +L+R I RL I CYRGIRH GLP RGQ T N RT +
Sbjct: 66 VHWELKRGERADIERLISISCYRGIRHQDGLPLRGQRTHTNARTAR 111
>UNIPROTKB|A7KIL2 [details] [associations]
symbol:RPS18 "Ribosomal protein S18" species:8030 "Salmo
salar" [GO:0015935 "small ribosomal subunit" evidence=ISS]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS]
InterPro:IPR001892 InterPro:IPR010979 InterPro:IPR018269
Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159
GO:GO:0006412 GO:GO:0003723 GO:GO:0003735 GO:GO:0022627
SUPFAM:SSF46946 PANTHER:PTHR10871 HOVERGEN:HBG000200
OrthoDB:EOG4KSPM2 EMBL:EF427383 EMBL:BT043500 EMBL:BT047156
EMBL:BT047683 EMBL:BT049532 EMBL:BT050180 EMBL:BT058115
EMBL:BT058207 EMBL:BT059815 EMBL:BT059907 EMBL:GQ505858
EMBL:GQ505859 ProteinModelPortal:A7KIL2 SMR:A7KIL2 Uniprot:A7KIL2
Length = 152
Score = 105 (42.0 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 21/44 (47%), Positives = 30/44 (68%)
Query: 122 IRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
+ RLK+I+ +RG+RH GL RGQHTK R +G+ V ++ KK
Sbjct: 111 LERLKKIRAHRGLRHFWGLRVRGQHTKTTGR--RGRTVGVSKKK 152
Score = 67 (28.6 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 21/67 (31%), Positives = 33/67 (49%)
Query: 49 RVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL----VDL-KMENKITKDMSEEELITIRD 103
RV I ++I +++ I GVGR A +L +DL K ++T D E ++TI
Sbjct: 14 RVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLSKRAGELTDD-EVERVVTIMQ 72
Query: 104 EVSKYMI 110
+Y I
Sbjct: 73 NPRQYKI 79
>RGD|2318487 [details] [associations]
symbol:LOC100362298 "ribosomal protein S18-like" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646
PROSITE:PS50159 RGD:2318487 GO:GO:0006412 GO:GO:0003723
GO:GO:0005840 GO:GO:0003735 SUPFAM:SSF46946 PANTHER:PTHR10871
GeneTree:ENSGT00390000012691 OMA:IKYIVRI OrthoDB:EOG4KSPM2
IPI:IPI00387914 RefSeq:XP_002729551.1 Ensembl:ENSRNOT00000048495
GeneID:100362298 KEGG:rno:100362298 UCSC:RGD:2318487 Uniprot:D3ZM33
Length = 152
Score = 102 (41.0 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 21/44 (47%), Positives = 29/44 (65%)
Query: 122 IRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
+ RLK+I+ +RG+RH GL RGQHTK R +G V ++ KK
Sbjct: 111 LERLKKIRAHRGLRHFWGLRVRGQHTKTTGR--RGHTVGVSKKK 152
Score = 70 (29.7 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 22/67 (32%), Positives = 34/67 (50%)
Query: 49 RVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL----VDL-KMENKITKDMSEEELITIRD 103
RV I ++I +++ I GVGR A +L +DL K ++T+D E +ITI
Sbjct: 14 RVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTED-EVERVITIMQ 72
Query: 104 EVSKYMI 110
+Y I
Sbjct: 73 NPRQYKI 79
>SGD|S000005025 [details] [associations]
symbol:SWS2 "Putative mitochondrial ribosomal protein of the
small subunit" species:4932 "Saccharomyces cerevisiae" [GO:0005763
"mitochondrial small ribosomal subunit" evidence=ISA] [GO:0042173
"regulation of sporulation resulting in formation of a cellular
spore" evidence=IMP] [GO:0003735 "structural constituent of
ribosome" evidence=IEA;ISA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IBA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0032543 "mitochondrial
translation" evidence=ISA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646
PROSITE:PS50159 SGD:S000005025 EMBL:BK006947 GO:GO:0042254
GO:GO:0003723 GO:GO:0003735 GO:GO:0032543 EMBL:DQ115393 EMBL:X86470
GO:GO:0005763 SUPFAM:SSF46946 GO:GO:0042173 RefSeq:NP_014325.3
GeneID:855650 KEGG:sce:YNL074C EMBL:Z71357 eggNOG:COG0099 KO:K02952
HAMAP:MF_01315 PANTHER:PTHR10871 HOGENOM:HOG000039878
OrthoDB:EOG4WHCWG PIR:S53897 RefSeq:NP_014318.3
ProteinModelPortal:P53937 SMR:P53937 DIP:DIP-5522N IntAct:P53937
MINT:MINT-539439 STRING:P53937 PaxDb:P53937 EnsemblFungi:YNL081C
GeneID:855643 KEGG:sce:YNL081C CYGD:YNL081c OMA:MTIEGDA
NextBio:979875 Genevestigator:P53937 GermOnline:YNL081C
Uniprot:P53937
Length = 143
Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 33/90 (36%), Positives = 53/90 (58%)
Query: 69 HGVGRTRARQILVDLKMENKITK-DMSEEELITIRDEVSKYMIEGDLRRF--NALAIRRL 125
+G+G+T A +I L + +SE ++++I E+S IEGD R + +A++R
Sbjct: 25 YGIGKTTAEKICSKLGFYPWMRMHQLSEPQIMSIASELSTMTIEGDARAIVKDNIALKR- 83
Query: 126 KEIQCYRGIRHIQGLPCRGQHTKNNCRTLK 155
+I Y G+RH LP RGQHT+NN +T +
Sbjct: 84 -KIGSYSGMRHTLHLPVRGQHTRNNAKTAR 112
>UNIPROTKB|Q5B4R2 [details] [associations]
symbol:AN4468.2 "Putative uncharacterized protein"
species:227321 "Aspergillus nidulans FGSC A4" [GO:0003735
"structural constituent of ribosome" evidence=IBA] [GO:0005739
"mitochondrion" evidence=IBA] [GO:0006412 "translation"
evidence=IBA] [GO:0015935 "small ribosomal subunit" evidence=IBA]
[GO:0042254 "ribosome biogenesis" evidence=IBA] [GO:0005829
"cytosol" evidence=IBA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646
PROSITE:PS50159 GO:GO:0005739 GO:GO:0006412 GO:GO:0042254
GO:GO:0003723 GO:GO:0003735 EMBL:AACD01000077 SUPFAM:SSF46946
GO:GO:0015935 eggNOG:COG0099 KO:K02952 PANTHER:PTHR10871
HOGENOM:HOG000039878 OrthoDB:EOG4WHCWG RefSeq:XP_662072.1
ProteinModelPortal:Q5B4R2 STRING:Q5B4R2 GeneID:2872269
KEGG:ani:AN4468.2 Uniprot:Q5B4R2
Length = 130
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 36/100 (36%), Positives = 53/100 (53%)
Query: 52 GVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMI 110
GV P + SLQ GVG + +I+ + +++ ++++ + +S+ I
Sbjct: 6 GVNFPEGQL--KSLQKFFGVGPQVSSRIMSRFHIHQTCKVGELANKQVLDLTAVLSEMKI 63
Query: 111 EGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNN 150
E DLRR I+RLKE YRG RH GLP RGQ T+NN
Sbjct: 64 ENDLRRQVLDDIKRLKETGTYRGRRHALGLPVRGQRTRNN 103
>UNIPROTKB|Q7R7S0 [details] [associations]
symbol:PY07508 "Ribosomal protein S13/S18" species:73239
"Plasmodium yoelii yoelii" [GO:0003735 "structural constituent of
ribosome" evidence=IBA] [GO:0005829 "cytosol" evidence=IBA]
[GO:0006412 "translation" evidence=IBA] [GO:0015935 "small
ribosomal subunit" evidence=IBA] [GO:0042254 "ribosome biogenesis"
evidence=IBA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646
PROSITE:PS50159 GO:GO:0005829 GO:GO:0006412 GO:GO:0042254
GO:GO:0003723 GO:GO:0003735 SUPFAM:SSF46946 GO:GO:0015935
eggNOG:COG0099 PANTHER:PTHR10871 KO:K02964 EMBL:AABL01002777
RefSeq:XP_728420.1 ProteinModelPortal:Q7R7S0 SMR:Q7R7S0
STRING:Q7R7S0 GeneID:3800630 KEGG:pyo:PY07508
EuPathDB:PlasmoDB:PY07508 Uniprot:Q7R7S0
Length = 156
Score = 112 (44.5 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 26/67 (38%), Positives = 40/67 (59%)
Query: 101 IRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVA 160
I+D + ++I L + + R+K+I+ +RG+RH GL RGQHTK R +G+ V
Sbjct: 92 IKDGKNLHVIANQLDSYLREDLERMKKIRLHRGLRHHWGLRVRGQHTKTTGR--RGRTVG 149
Query: 161 IAGKKKA 167
+A KK A
Sbjct: 150 VAKKKGA 156
Score = 41 (19.5 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 11/54 (20%), Positives = 25/54 (46%)
Query: 49 RVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITI 101
R+ + +++ +L I G+G+ A I ++ K +++ EE+ I
Sbjct: 16 RILNTNVDGKEKVTIALTAIKGIGKRIANVICKQANVDPTKRAGELTTEEINNI 69
>UNIPROTKB|G4MNZ8 [details] [associations]
symbol:MGG_05661 "40S ribosomal protein S18" species:242507
"Magnaporthe oryzae 70-15" [GO:0043581 "mycelium development"
evidence=IEP] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646
PROSITE:PS50159 GO:GO:0006412 GO:GO:0003723 GO:GO:0005840
GO:GO:0003735 EMBL:CM001231 GO:GO:0043581 SUPFAM:SSF46946
PANTHER:PTHR10871 KO:K02964 RefSeq:XP_003710559.1
ProteinModelPortal:G4MNZ8 SMR:G4MNZ8 EnsemblFungi:MGG_05661T0
GeneID:2676017 KEGG:mgr:MGG_05661 Uniprot:G4MNZ8
Length = 156
Score = 104 (41.7 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 21/44 (47%), Positives = 30/44 (68%)
Query: 122 IRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
+ RLK+I+ +RG+RH GL RGQHTK R +G+ V ++ KK
Sbjct: 113 LERLKKIRAHRGLRHYWGLRVRGQHTKTTGR--RGRTVGVSKKK 154
Score = 63 (27.2 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 18/66 (27%), Positives = 34/66 (51%)
Query: 49 RVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEEL---ITIRDE 104
R+ + ++I Y+L I GVGR + ++ ++ NK +++ EEL +TI
Sbjct: 16 RLLNTNVDGKQKIVYALTKIKGVGRRYSNLVVKKADVDLNKRAGELTSEELERVVTILQN 75
Query: 105 VSKYMI 110
++Y I
Sbjct: 76 PTQYKI 81
>UNIPROTKB|Q7RXX0 [details] [associations]
symbol:NCU00475 "40S ribosomal protein S18" species:367110
"Neurospora crassa OR74A" [GO:0003735 "structural constituent of
ribosome" evidence=IBA] [GO:0005829 "cytosol" evidence=IBA]
[GO:0006412 "translation" evidence=IBA] [GO:0015935 "small
ribosomal subunit" evidence=IBA] [GO:0042254 "ribosome biogenesis"
evidence=IBA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646
PROSITE:PS50159 GO:GO:0005829 GO:GO:0006412 GO:GO:0042254
GO:GO:0003723 GO:GO:0003735 SUPFAM:SSF46946 GO:GO:0015935
eggNOG:COG0099 PANTHER:PTHR10871 HOGENOM:HOG000039877 KO:K02964
OrthoDB:EOG437VQ7 EMBL:AABX02000001 RefSeq:XP_956794.2
UniGene:Ncr.4507 ProteinModelPortal:Q7RXX0 SMR:Q7RXX0 STRING:Q7RXX0
EnsemblFungi:EFNCRT00000000145 GeneID:3872941 KEGG:ncr:NCU00475
Uniprot:Q7RXX0
Length = 156
Score = 104 (41.7 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 21/44 (47%), Positives = 30/44 (68%)
Query: 122 IRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
+ RLK+I+ +RG+RH GL RGQHTK R +G+ V ++ KK
Sbjct: 113 LERLKKIRAHRGLRHYWGLRVRGQHTKTTGR--RGRTVGVSKKK 154
Score = 59 (25.8 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 19/67 (28%), Positives = 32/67 (47%)
Query: 49 RVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL----VDL-KMENKITKDMSEEELITIRD 103
R+ + +++ YSL I GVGR + + VDL K ++T + E ++TI
Sbjct: 16 RLLNTNVDGKQKVVYSLTKIKGVGRRYSNLVCKKADVDLSKRAGELTSE-ELERIVTIMQ 74
Query: 104 EVSKYMI 110
+ Y I
Sbjct: 75 NPTAYKI 81
>ASPGD|ASPL0000026438 [details] [associations]
symbol:AN5441 species:162425 "Emericella nidulans"
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005576
"extracellular region" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0006407 "rRNA export from
nucleus" evidence=IEA] [GO:0000447 "endonucleolytic cleavage in
ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646
PROSITE:PS50159 GO:GO:0005829 GO:GO:0006412 GO:GO:0042254
GO:GO:0003723 EMBL:BN001305 GO:GO:0003735 EMBL:AACD01000094
SUPFAM:SSF46946 GO:GO:0015935 eggNOG:COG0099 PANTHER:PTHR10871
OMA:FQHILRI HOGENOM:HOG000039877 KO:K02964 OrthoDB:EOG437VQ7
RefSeq:XP_663045.1 ProteinModelPortal:Q5B1Y9 SMR:Q5B1Y9
STRING:Q5B1Y9 EnsemblFungi:CADANIAT00003648 GeneID:2871718
KEGG:ani:AN5441.2 Uniprot:Q5B1Y9
Length = 155
Score = 103 (41.3 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 21/44 (47%), Positives = 30/44 (68%)
Query: 122 IRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
+ RLK+I+ +RG+RH GL RGQHTK R +G+ V ++ KK
Sbjct: 113 LERLKKIRSHRGLRHYWGLRVRGQHTKTTGR--RGRTVGVSKKK 154
Score = 60 (26.2 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 17/66 (25%), Positives = 33/66 (50%)
Query: 49 RVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEEL---ITIRDE 104
R+ + ++I Y+L + GVGR + + ++ NK +++ EEL +TI
Sbjct: 16 RLLNTNVDGKEKIMYALTQVKGVGRRYSNLVCKKADVDLNKRAGELTTEELERIVTILQN 75
Query: 105 VSKYMI 110
++Y I
Sbjct: 76 PTQYKI 81
>UNIPROTKB|Q5B1Y9 [details] [associations]
symbol:AN5441.2 "Ribosomal protein S13p/S18e
(AFU_orthologue; AFUA_6G13550)" species:227321 "Aspergillus
nidulans FGSC A4" [GO:0003735 "structural constituent of ribosome"
evidence=IBA] [GO:0005829 "cytosol" evidence=IBA] [GO:0006412
"translation" evidence=IBA] [GO:0015935 "small ribosomal subunit"
evidence=IBA] [GO:0042254 "ribosome biogenesis" evidence=IBA]
InterPro:IPR001892 InterPro:IPR010979 InterPro:IPR018269
Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159
GO:GO:0005829 GO:GO:0006412 GO:GO:0042254 GO:GO:0003723
EMBL:BN001305 GO:GO:0003735 EMBL:AACD01000094 SUPFAM:SSF46946
GO:GO:0015935 eggNOG:COG0099 PANTHER:PTHR10871 OMA:FQHILRI
HOGENOM:HOG000039877 KO:K02964 OrthoDB:EOG437VQ7 RefSeq:XP_663045.1
ProteinModelPortal:Q5B1Y9 SMR:Q5B1Y9 STRING:Q5B1Y9
EnsemblFungi:CADANIAT00003648 GeneID:2871718 KEGG:ani:AN5441.2
Uniprot:Q5B1Y9
Length = 155
Score = 103 (41.3 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 21/44 (47%), Positives = 30/44 (68%)
Query: 122 IRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
+ RLK+I+ +RG+RH GL RGQHTK R +G+ V ++ KK
Sbjct: 113 LERLKKIRSHRGLRHYWGLRVRGQHTKTTGR--RGRTVGVSKKK 154
Score = 60 (26.2 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 17/66 (25%), Positives = 33/66 (50%)
Query: 49 RVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEEL---ITIRDE 104
R+ + ++I Y+L + GVGR + + ++ NK +++ EEL +TI
Sbjct: 16 RLLNTNVDGKEKIMYALTQVKGVGRRYSNLVCKKADVDLNKRAGELTTEELERIVTILQN 75
Query: 105 VSKYMI 110
++Y I
Sbjct: 76 PTQYKI 81
>DICTYBASE|DDB_G0276415 [details] [associations]
symbol:rps18 "40S ribosomal protein S18"
species:44689 "Dictyostelium discoideum" [GO:0006412 "translation"
evidence=IEA;ISS;IBA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA;ISS;IBA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IBA]
[GO:0015935 "small ribosomal subunit" evidence=IBA] [GO:0005829
"cytosol" evidence=IBA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0019843 "rRNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646
PROSITE:PS50159 dictyBase:DDB_G0276415 GO:GO:0005829 GO:GO:0006412
GenomeReviews:CM000151_GR GO:GO:0042254 GO:GO:0003735 GO:GO:0019843
EMBL:AAFI02000015 SUPFAM:SSF46946 GO:GO:0015935 eggNOG:COG0099
HAMAP:MF_01315 PANTHER:PTHR10871 OMA:FQHILRI KO:K02964
RefSeq:XP_643120.1 ProteinModelPortal:Q869U7 SMR:Q869U7
STRING:Q869U7 PRIDE:Q869U7 EnsemblProtists:DDB0231058
GeneID:8620525 KEGG:ddi:DDB_G0276415 ProtClustDB:PTZ00134
Uniprot:Q869U7
Length = 154
Score = 98 (39.6 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 20/44 (45%), Positives = 30/44 (68%)
Query: 122 IRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
+ RLK+I+ +RG+RH GL RGQ TK R +G+ V +AG++
Sbjct: 113 LERLKKIRAHRGVRHHFGLRVRGQKTKTTGR--RGRTVGVAGRR 154
Score = 64 (27.6 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 19/67 (28%), Positives = 33/67 (49%)
Query: 49 RVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL--VDL---KMENKITKDMSEEELITIRD 103
R+ + ++I+Y+L + GVGR A + D+ K +++KD E L TI +
Sbjct: 16 RIYNTNVDGRRKIQYALTCVKGVGRRFANLVCKKADIDTSKRAGELSKD-EVERLTTIMN 74
Query: 104 EVSKYMI 110
+Y I
Sbjct: 75 HPRQYNI 81
>UNIPROTKB|P95986 [details] [associations]
symbol:rps13 "30S ribosomal protein S13" species:273057
"Sulfolobus solfataricus P2" [GO:0003735 "structural constituent of
ribosome" evidence=IBA] [GO:0005829 "cytosol" evidence=IBA]
[GO:0006412 "translation" evidence=IBA] [GO:0015935 "small
ribosomal subunit" evidence=IBA] [GO:0042254 "ribosome biogenesis"
evidence=IBA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 InterPro:IPR019977 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 GO:GO:0005829
GO:GO:0006412 GO:GO:0042254 GO:GO:0003735 EMBL:AE006641
GenomeReviews:AE006641_GR GO:GO:0019843 EMBL:Y08257 SUPFAM:SSF46946
GO:GO:0015935 eggNOG:COG0099 KO:K02952 HAMAP:MF_01315
PANTHER:PTHR10871 OMA:FQHILRI ProtClustDB:PRK04053
TIGRFAMs:TIGR03629 PIR:S75414 RefSeq:NP_341646.1
ProteinModelPortal:P95986 GeneID:1455327 KEGG:sso:SSO0074
HOGENOM:HOG000039877 Uniprot:P95986
Length = 165
Score = 91 (37.1 bits), Expect = 9.6e-08, Sum P(2) = 9.6e-08
Identities = 22/60 (36%), Positives = 33/60 (55%)
Query: 108 YMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKA 167
+++ DL + I R K+ + +RG+RH GL RGQ T+ RT G + +A KK A
Sbjct: 93 HLVTSDLIFYVRNDIEREKKSRSWRGVRHSLGLKVRGQRTRTTGRT--GMTIGVARKKAA 150
Score = 75 (31.5 bits), Expect = 9.6e-08, Sum P(2) = 9.6e-08
Identities = 16/65 (24%), Positives = 35/65 (53%)
Query: 49 RVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVSK 107
R+ G ++ ++ Y+L + G+G A+ I+ L M+ N ++S+ E+ + +S
Sbjct: 10 RIFGQDVDGTMKLPYALAMVKGIGYNTAKAIIRKLGMDPNARLGELSDAEVKKVESVISD 69
Query: 108 YMIEG 112
+ I+G
Sbjct: 70 HTIKG 74
>POMBASE|SPBC16D10.11c [details] [associations]
symbol:rps1801 "40S ribosomal protein S18 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0002181 "cytoplasmic
translation" evidence=NAS] [GO:0003735 "structural constituent of
ribosome" evidence=ISO] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006412 "translation"
evidence=ISO] [GO:0019843 "rRNA binding" evidence=IEA] [GO:0022627
"cytosolic small ribosomal subunit" evidence=ISO] [GO:0042254
"ribosome biogenesis" evidence=ISO] InterPro:IPR001892
InterPro:IPR010979 InterPro:IPR018269 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159
PomBase:SPBC16D10.11c PomBase:SPCC1259.01c GO:GO:0005739
GO:GO:0005730 EMBL:CU329672 GenomeReviews:CU329672_GR EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0042254 GO:GO:0003735 GO:GO:0002181
GO:GO:0019843 GO:GO:0022627 SUPFAM:SSF46946 eggNOG:COG0099
HAMAP:MF_01315 PANTHER:PTHR10871 OMA:FQHILRI HOGENOM:HOG000039877
KO:K02964 PIR:T39575 RefSeq:NP_588057.2 RefSeq:NP_596506.1
ProteinModelPortal:O94754 SMR:O94754 IntAct:O94754 STRING:O94754
PRIDE:O94754 EnsemblFungi:SPBC16D10.11c.1
EnsemblFungi:SPCC1259.01c.1 GeneID:2540180 GeneID:3361064
KEGG:spo:SPBC16D10.11c KEGG:spo:SPCC1259.01c OrthoDB:EOG437VQ7
NextBio:20801312 Uniprot:O94754
Length = 152
Score = 103 (41.3 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 22/44 (50%), Positives = 29/44 (65%)
Query: 122 IRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
+ RLK+IQ +RG+RH L RGQHTK R +GK V ++ KK
Sbjct: 111 LERLKKIQTHRGLRHALDLRVRGQHTKTTGR--RGKTVGVSKKK 152
Score = 49 (22.3 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 15/66 (22%), Positives = 31/66 (46%)
Query: 49 RVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL--VDLKMENKITKDMSEE--ELITIRDE 104
R+ + ++ +++ I GVGR A + D+ M + + +EE ++TI
Sbjct: 14 RLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELTTEELERIVTIIQN 73
Query: 105 VSKYMI 110
S++ I
Sbjct: 74 PSQFKI 79
>POMBASE|SPCC1259.01c [details] [associations]
symbol:rps1802 "40S ribosomal protein S18 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003735 "structural
constituent of ribosome" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006412 "translation" evidence=ISO]
[GO:0019843 "rRNA binding" evidence=ISM] [GO:0022627 "cytosolic
small ribosomal subunit" evidence=ISO] [GO:0042254 "ribosome
biogenesis" evidence=ISO] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646
PROSITE:PS50159 PomBase:SPBC16D10.11c PomBase:SPCC1259.01c
GO:GO:0005739 GO:GO:0005730 EMBL:CU329672 GenomeReviews:CU329672_GR
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0042254 GO:GO:0003735
GO:GO:0002181 GO:GO:0019843 GO:GO:0022627 SUPFAM:SSF46946
eggNOG:COG0099 HAMAP:MF_01315 PANTHER:PTHR10871 OMA:FQHILRI
HOGENOM:HOG000039877 KO:K02964 PIR:T39575 RefSeq:NP_588057.2
RefSeq:NP_596506.1 ProteinModelPortal:O94754 SMR:O94754
IntAct:O94754 STRING:O94754 PRIDE:O94754
EnsemblFungi:SPBC16D10.11c.1 EnsemblFungi:SPCC1259.01c.1
GeneID:2540180 GeneID:3361064 KEGG:spo:SPBC16D10.11c
KEGG:spo:SPCC1259.01c OrthoDB:EOG437VQ7 NextBio:20801312
Uniprot:O94754
Length = 152
Score = 103 (41.3 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 22/44 (50%), Positives = 29/44 (65%)
Query: 122 IRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
+ RLK+IQ +RG+RH L RGQHTK R +GK V ++ KK
Sbjct: 111 LERLKKIQTHRGLRHALDLRVRGQHTKTTGR--RGKTVGVSKKK 152
Score = 49 (22.3 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 15/66 (22%), Positives = 31/66 (46%)
Query: 49 RVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL--VDLKMENKITKDMSEE--ELITIRDE 104
R+ + ++ +++ I GVGR A + D+ M + + +EE ++TI
Sbjct: 14 RLLNTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELTTEELERIVTIIQN 73
Query: 105 VSKYMI 110
S++ I
Sbjct: 74 PSQFKI 79
>CGD|CAL0002110 [details] [associations]
symbol:orf19.6406 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0042173 "regulation
of sporulation resulting in formation of a cellular spore"
evidence=IEA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646
PROSITE:PS50159 CGD:CAL0002110 GO:GO:0006412 GO:GO:0003723
GO:GO:0005840 GO:GO:0003735 EMBL:AACQ01000073 EMBL:AACQ01000072
SUPFAM:SSF46946 eggNOG:COG0099 KO:K02952 PANTHER:PTHR10871
RefSeq:XP_716162.1 RefSeq:XP_716245.1 ProteinModelPortal:Q5A357
STRING:Q5A357 GeneID:3642115 GeneID:3642169 KEGG:cal:CaO19.13764
KEGG:cal:CaO19.6406 Uniprot:Q5A357
Length = 122
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 31/108 (28%), Positives = 54/108 (50%)
Query: 50 VGGVEIPNNKRIEYSL-QYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSK 107
V G I +N + L + I G+G A +++ + + N ++E +++ + E+S+
Sbjct: 5 VFGKSIKHNFPVRIGLAKTIFGIGYQTAERLMAKVGIYPNCRMNQLTEPQIMDLNKEISQ 64
Query: 108 YMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLK 155
++EG L+ I+ + I Y G RH G P RGQ TK N T +
Sbjct: 65 LLVEGHLKHKINNDIKMKRTIGSYAGSRHALGFPVRGQRTKTNGSTAR 112
>UNIPROTKB|Q2F922 [details] [associations]
symbol:rps13 "Ribosomal protein S13" species:39947 "Oryza
sativa Japonica Group" [GO:0005739 "mitochondrion" evidence=IC]
InterPro:IPR001892 InterPro:IPR010979 InterPro:IPR018269
Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159
GO:GO:0005739 GO:GO:0006412 GO:GO:0003723 GO:GO:0005840
GO:GO:0003735 EMBL:DQ167807 EMBL:DQ167400 SUPFAM:SSF46946
eggNOG:COG0099 HOGENOM:HOG000039879 PANTHER:PTHR10871
ProteinModelPortal:Q2F922 STRING:Q2F922 Gramene:Q2F922 OMA:NARTARK
Uniprot:Q2F922
Length = 116
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 30/107 (28%), Positives = 56/107 (52%)
Query: 51 GGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKIT-KDMSEEELITIRDEVSK-Y 108
G +P+ +++ + + G+G +A Q+ L + I ++++ ++ I +++ +
Sbjct: 6 GARSLPD-EQVRIASTKMDGIGPKKAIQLRYRLGISGNIKMNELTKYQIDQIEQMIAQDH 64
Query: 109 MIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLK 155
++ +L+R I RL I YRGIRH G P RGQ T N RT +
Sbjct: 65 VVHWELKRGERADIERLISISRYRGIRHQDGSPLRGQRTHTNARTAR 111
>UNIPROTKB|Q2F974 [details] [associations]
symbol:rps13 "Ribosomal protein S13" species:39946 "Oryza
sativa Indica Group" [GO:0005739 "mitochondrion" evidence=IC]
InterPro:IPR001892 InterPro:IPR010979 InterPro:IPR018269
Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159
GO:GO:0005739 GO:GO:0006412 GO:GO:0003723 GO:GO:0005840
GO:GO:0003735 EMBL:DQ167399 SUPFAM:SSF46946 PANTHER:PTHR10871
EMBL:JN861111 EMBL:JN861112 EMBL:JF281153 EMBL:JF281154
EMBL:AP011077 RefSeq:YP_514659.1 ProteinModelPortal:Q2F974
GeneID:3950763 Gramene:Q2F974 Uniprot:Q2F974
Length = 116
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 30/107 (28%), Positives = 56/107 (52%)
Query: 51 GGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKIT-KDMSEEELITIRDEVSK-Y 108
G +P+ +++ + + G+G +A Q+ L + I ++++ ++ I +++ +
Sbjct: 6 GARSLPD-EQVRIASTKMDGIGPKKAIQLRYRLGISGNIKMNELTKYQIDQIEQMIAQDH 64
Query: 109 MIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLK 155
++ +L+R I RL I YRGIRH G P RGQ T N RT +
Sbjct: 65 VVHWELKRGERADIERLISISRYRGIRHQDGSPLRGQRTHTNARTAR 111
>GENEDB_PFALCIPARUM|PF11_0272 [details] [associations]
symbol:PF11_0272 "ribosomal protein S18,
putative" species:5833 "Plasmodium falciparum" [GO:0015935 "small
ribosomal subunit" evidence=ISS] InterPro:IPR001892
InterPro:IPR010979 InterPro:IPR018269 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 GO:GO:0003735 EMBL:AE014186
SUPFAM:SSF46946 PANTHER:PTHR10871 OMA:FQHILRI HOGENOM:HOG000039877
KO:K02964 ProtClustDB:PTZ00134 RefSeq:XP_001347943.1
ProteinModelPortal:Q8IIA2 SMR:Q8IIA2 IntAct:Q8IIA2
MINT:MINT-1584243 PRIDE:Q8IIA2 EnsemblProtists:PF11_0272:mRNA
GeneID:810819 KEGG:pfa:PF11_0272 EuPathDB:PlasmoDB:PF3D7_1126200
Uniprot:Q8IIA2
Length = 156
Score = 107 (42.7 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 31/78 (39%), Positives = 45/78 (57%)
Query: 91 KDMSEEELI-TIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKN 149
KD+ E + I I +++ Y+ E DL R +K+I+ +RG+RH GL RGQHTK
Sbjct: 90 KDLKEGKNIHVIANQLDSYLRE-DLER--------MKKIRLHRGLRHHWGLRVRGQHTKT 140
Query: 150 NCRTLKGKRVAIAGKKKA 167
R +G+ V +A KK A
Sbjct: 141 TGR--RGRTVGVAKKKGA 156
Score = 40 (19.1 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 11/54 (20%), Positives = 25/54 (46%)
Query: 49 RVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITI 101
R+ + +++ +L I G+G+ A I ++ K +++ EE+ I
Sbjct: 16 RILNTNVDGKEKVIIALTAIKGIGKRMATVICKQANVDPTKRAGELTTEEIDNI 69
>FB|FBgn0010411 [details] [associations]
symbol:RpS18 "Ribosomal protein S18" species:7227 "Drosophila
melanogaster" [GO:0003735 "structural constituent of ribosome"
evidence=ISS;IBA;NAS] [GO:0022627 "cytosolic small ribosomal
subunit" evidence=ISS;NAS] [GO:0006412 "translation"
evidence=ISS;IBA;NAS] [GO:0006413 "translational initiation"
evidence=NAS] [GO:0005840 "ribosome" evidence=NAS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005811 "lipid particle" evidence=IDA]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0000022 "mitotic spindle elongation" evidence=IMP] [GO:0015935
"small ribosomal subunit" evidence=IBA] [GO:0042254 "ribosome
biogenesis" evidence=IBA] [GO:0005829 "cytosol" evidence=IBA]
InterPro:IPR001892 InterPro:IPR010979 InterPro:IPR018269
Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159
EMBL:AE013599 GO:GO:0005829 GO:GO:0005811 GO:GO:0006412
GO:GO:0042254 GO:GO:0003735 GO:GO:0019843 GO:GO:0000022
ChiTaRS:RPS18 SUPFAM:SSF46946 GO:GO:0015935 eggNOG:COG0099
HAMAP:MF_01315 PANTHER:PTHR10871 OMA:FQHILRI KO:K02964
GeneTree:ENSGT00390000012691 CTD:6222 EMBL:L22959 EMBL:AY118434
EMBL:BT024929 RefSeq:NP_476964.1 RefSeq:NP_725943.1
UniGene:Dm.20558 ProteinModelPortal:P41094 SMR:P41094
DIP:DIP-21027N STRING:P41094 PaxDb:P41094 PRIDE:P41094
EnsemblMetazoa:FBtr0086273 EnsemblMetazoa:FBtr0086274 GeneID:37292
KEGG:dme:Dmel_CG8900 FlyBase:FBgn0010411 InParanoid:P41094
OrthoDB:EOG49GJ00 PhylomeDB:P41094 GenomeRNAi:37292 NextBio:802956
Bgee:P41094 GermOnline:CG8900 Uniprot:P41094
Length = 152
Score = 103 (41.3 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 21/44 (47%), Positives = 30/44 (68%)
Query: 122 IRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
+ RLK+I+ +RG+RH GL RGQHTK R +G+ V ++ KK
Sbjct: 111 LERLKKIRSHRGLRHYWGLRVRGQHTKTTGR--RGRTVGVSKKK 152
Score = 47 (21.6 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 15/66 (22%), Positives = 31/66 (46%)
Query: 49 RVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEEL---ITIRDE 104
R+ I +++ ++ I GVGR + +L ++ K + +EEE+ +TI
Sbjct: 14 RIMNTNIDGKRKVGIAMTAIKGVGRRYSNIVLKKADVDLTKRAGECTEEEVDKVVTIISN 73
Query: 105 VSKYMI 110
+Y +
Sbjct: 74 PLQYKV 79
>UNIPROTKB|A8HVP2 [details] [associations]
symbol:RPS18 "Ribosomal protein S18" species:3055
"Chlamydomonas reinhardtii" [GO:0003735 "structural constituent of
ribosome" evidence=IBA] [GO:0005829 "cytosol" evidence=IBA]
[GO:0006412 "translation" evidence=IBA] [GO:0015935 "small
ribosomal subunit" evidence=IBA] [GO:0042254 "ribosome biogenesis"
evidence=IBA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646
PROSITE:PS50159 GO:GO:0005829 GO:GO:0005886 GO:GO:0005618
GO:GO:0005773 GO:GO:0005730 GO:GO:0006412 GO:GO:0042254
GO:GO:0003723 GO:GO:0003735 GO:GO:0022626 EMBL:DS496110
SUPFAM:SSF46946 GO:GO:0015935 PANTHER:PTHR10871 KO:K02964
ProtClustDB:CLSN2681852 RefSeq:XP_001696472.1 UniGene:Cre.8169
ProteinModelPortal:A8HVP2 SMR:A8HVP2 STRING:A8HVP2 PRIDE:A8HVP2
EnsemblPlants:EDP08449 GeneID:5721802 KEGG:cre:CHLREDRAFT_155649
Uniprot:A8HVP2
Length = 153
Score = 105 (42.0 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 23/44 (52%), Positives = 29/44 (65%)
Query: 122 IRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
+ RLK+I+ +RG+RH GL RGQHTK R GK V +A KK
Sbjct: 112 LERLKKIRNHRGLRHYWGLRVRGQHTKTTGRA--GKTVGVAKKK 153
Score = 42 (19.8 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 11/51 (21%), Positives = 24/51 (47%)
Query: 49 RVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEEL 98
R+ + +I Y++ I G+GR + + +++ K + S +EL
Sbjct: 15 RLLNTNVDGKNKIMYAMTAIRGIGRRFSNLVCKKAEVDLRKRAGECSADEL 65
>UNIPROTKB|Q756F0 [details] [associations]
symbol:AER315C "AER315Cp" species:284811 "Ashbya gossypii
ATCC 10895" [GO:0003735 "structural constituent of ribosome"
evidence=IBA] [GO:0005829 "cytosol" evidence=IBA] [GO:0006412
"translation" evidence=IBA] [GO:0015935 "small ribosomal subunit"
evidence=IBA] [GO:0042254 "ribosome biogenesis" evidence=IBA]
InterPro:IPR001892 InterPro:IPR010979 InterPro:IPR018269
Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159
GO:GO:0005829 GO:GO:0006412 GO:GO:0042254 GO:GO:0003723
GO:GO:0003735 EMBL:AE016818 GenomeReviews:AE016818_GR
SUPFAM:SSF46946 GO:GO:0015935 PANTHER:PTHR10871 OMA:FQHILRI
HOGENOM:HOG000039877 KO:K02964 OrthoDB:EOG437VQ7 RefSeq:NP_985171.1
ProteinModelPortal:Q756F0 SMR:Q756F0 STRING:Q756F0
EnsemblFungi:AAS52995 GeneID:4621384 KEGG:ago:AGOS_AER315C
PhylomeDB:Q756F0 Uniprot:Q756F0
Length = 146
Score = 93 (37.8 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 122 IRRLKEIQCYRGIRHIQGLPCRGQHTKNNCR 152
+ RLK+I+ +RGIRH GL RGQHTK R
Sbjct: 113 LERLKKIRAHRGIRHFWGLRVRGQHTKTTGR 143
Score = 63 (27.2 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 49 RVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEEL 98
R+ + N +I Y+L I GVGR A I ++ NK ++++EEL
Sbjct: 16 RLLNTNVDGNIKIVYALTTIRGVGRRYANLICKKADVDLNKRAGELTQEEL 66
>RGD|1561919 [details] [associations]
symbol:RGD1561919 "similar to ribosomal protein S18"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IBA] [GO:0005829 "cytosol" evidence=IBA] [GO:0006412
"translation" evidence=IBA] [GO:0015935 "small ribosomal subunit"
evidence=IBA] [GO:0042254 "ribosome biogenesis" evidence=IBA]
InterPro:IPR001892 InterPro:IPR010979 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS50159 RGD:1561919 GO:GO:0005829
GO:GO:0006412 GO:GO:0042254 GO:GO:0003723 GO:GO:0003735
SUPFAM:SSF46946 GO:GO:0015935 PANTHER:PTHR10871
GeneTree:ENSGT00390000012691 OrthoDB:EOG4KSPM2 IPI:IPI00197271
RefSeq:XP_226269.1 Ensembl:ENSRNOT00000047417 GeneID:307665
KEGG:rno:307665 UCSC:RGD:1561919 CTD:307665 NextBio:657735
Uniprot:D3ZAU6
Length = 152
Score = 98 (39.6 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 19/44 (43%), Positives = 30/44 (68%)
Query: 122 IRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
+ R+K+I+ +RG+RH GL RG+HTK R +G+ V ++ KK
Sbjct: 111 LERVKKIRAHRGLRHFWGLRVRGRHTKTTGR--RGRTVGVSKKK 152
Score = 56 (24.8 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 20/67 (29%), Positives = 32/67 (47%)
Query: 49 RVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL----VDL-KMENKITKDMSEEELITIRD 103
RV + ++I ++ I GVG A +L +DL K ++T+D E +ITI
Sbjct: 14 RVLDTNVDGQRKIALAITAIKGVGWRYAHVVLRKADIDLTKRAGELTED-EVERVITIMQ 72
Query: 104 EVSKYMI 110
+Y I
Sbjct: 73 NPRQYKI 79
>TAIR|locus:2199670 [details] [associations]
symbol:PFL "POINTED FIRST LEAVES" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0005840 "ribosome" evidence=IEA;ISS] [GO:0006412 "translation"
evidence=IEA;ISS] [GO:0015935 "small ribosomal subunit"
evidence=ISS] [GO:0042254 "ribosome biogenesis" evidence=IBA]
[GO:0005618 "cell wall" evidence=IDA] [GO:0005774 "vacuolar
membrane" evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
[GO:0006413 "translational initiation" evidence=TAS]
InterPro:IPR001892 InterPro:IPR010979 InterPro:IPR018269
Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005886 GO:GO:0009506
GO:GO:0005774 GO:GO:0005618 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0005730 GO:GO:0006413 GO:GO:0042254 GO:GO:0003735
GO:GO:0019843 EMBL:AL161515 EMBL:AL049482 GO:GO:0022627
SUPFAM:SSF46946 EMBL:AC003979 EMBL:Y12227 EMBL:AC015446
EMBL:AC079286 eggNOG:COG0099 PANTHER:PTHR10871 HOGENOM:HOG000039877
KO:K02964 EMBL:Z23165 EMBL:Z28701 EMBL:Z28702 EMBL:Z28962
EMBL:AF411781 EMBL:AF386941 EMBL:AF370463 EMBL:AY034965
EMBL:AY064680 EMBL:AY070029 EMBL:AY086334 EMBL:AY086800
EMBL:BT006539 EMBL:AY087428 IPI:IPI00532609 PIR:S46223
RefSeq:NP_173692.1 RefSeq:NP_192718.1 RefSeq:NP_564434.1
UniGene:At.179 UniGene:At.180 UniGene:At.20392 UniGene:At.33672
ProteinModelPortal:P34788 SMR:P34788 IntAct:P34788 STRING:P34788
PaxDb:P34788 PRIDE:P34788 EnsemblPlants:AT1G22780.1
EnsemblPlants:AT1G34030.1 EnsemblPlants:AT4G09800.1 GeneID:826569
GeneID:838884 GeneID:840300 KEGG:ath:AT1G22780 KEGG:ath:AT1G34030
KEGG:ath:AT4G09800 GeneFarm:799 GeneFarm:800 GeneFarm:802
TAIR:At1g22780 TAIR:At1g34030 TAIR:At4g09800 InParanoid:P34788
OMA:IKYIVRI PhylomeDB:P34788 ProtClustDB:CLSN2681852
Genevestigator:P34788 GermOnline:AT1G22780 Uniprot:P34788
Length = 152
Score = 101 (40.6 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 21/44 (47%), Positives = 30/44 (68%)
Query: 122 IRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
+ RLK+I+ +RG+RH GL RGQHTK R +GK V ++ K+
Sbjct: 111 LERLKKIRNHRGLRHYWGLRVRGQHTKTTGR--RGKTVGVSKKR 152
Score = 50 (22.7 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 49 RVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL--VDLKMENKITKDMSEEEL 98
RV + ++I ++L I G+GR A + D+ M NK ++S E+
Sbjct: 14 RVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDM-NKRAGELSAAEI 64
>TAIR|locus:2009066 [details] [associations]
symbol:AT1G34030 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA;ISS] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0005840
"ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA;ISS] [GO:0015935 "small ribosomal subunit"
evidence=ISS] [GO:0042254 "ribosome biogenesis" evidence=IBA]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0022626 "cytosolic
ribosome" evidence=IDA] [GO:0005618 "cell wall" evidence=IDA]
[GO:0005774 "vacuolar membrane" evidence=IDA] [GO:0016020
"membrane" evidence=IDA] [GO:0022627 "cytosolic small ribosomal
subunit" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005829 "cytosol" evidence=RCA] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
[GO:0001510 "RNA methylation" evidence=RCA] InterPro:IPR001892
InterPro:IPR010979 InterPro:IPR018269 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005886 GO:GO:0009506 GO:GO:0005774
GO:GO:0005618 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730
GO:GO:0006413 GO:GO:0042254 GO:GO:0003735 GO:GO:0019843
EMBL:AL161515 EMBL:AL049482 GO:GO:0022627 SUPFAM:SSF46946
EMBL:AC003979 EMBL:Y12227 EMBL:AC015446 EMBL:AC079286
eggNOG:COG0099 PANTHER:PTHR10871 HOGENOM:HOG000039877 KO:K02964
EMBL:Z23165 EMBL:Z28701 EMBL:Z28702 EMBL:Z28962 EMBL:AF411781
EMBL:AF386941 EMBL:AF370463 EMBL:AY034965 EMBL:AY064680
EMBL:AY070029 EMBL:AY086334 EMBL:AY086800 EMBL:BT006539
EMBL:AY087428 IPI:IPI00532609 PIR:S46223 RefSeq:NP_173692.1
RefSeq:NP_192718.1 RefSeq:NP_564434.1 UniGene:At.179 UniGene:At.180
UniGene:At.20392 UniGene:At.33672 ProteinModelPortal:P34788
SMR:P34788 IntAct:P34788 STRING:P34788 PaxDb:P34788 PRIDE:P34788
EnsemblPlants:AT1G22780.1 EnsemblPlants:AT1G34030.1
EnsemblPlants:AT4G09800.1 GeneID:826569 GeneID:838884 GeneID:840300
KEGG:ath:AT1G22780 KEGG:ath:AT1G34030 KEGG:ath:AT4G09800
GeneFarm:799 GeneFarm:800 GeneFarm:802 TAIR:At1g22780
TAIR:At1g34030 TAIR:At4g09800 InParanoid:P34788 OMA:IKYIVRI
PhylomeDB:P34788 ProtClustDB:CLSN2681852 Genevestigator:P34788
GermOnline:AT1G22780 Uniprot:P34788
Length = 152
Score = 101 (40.6 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 21/44 (47%), Positives = 30/44 (68%)
Query: 122 IRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
+ RLK+I+ +RG+RH GL RGQHTK R +GK V ++ K+
Sbjct: 111 LERLKKIRNHRGLRHYWGLRVRGQHTKTTGR--RGKTVGVSKKR 152
Score = 50 (22.7 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 49 RVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL--VDLKMENKITKDMSEEEL 98
RV + ++I ++L I G+GR A + D+ M NK ++S E+
Sbjct: 14 RVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDM-NKRAGELSAAEI 64
>TAIR|locus:2005541 [details] [associations]
symbol:RPS18C "S18 ribosomal protein" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA;ISS;TAS] [GO:0015935 "small ribosomal subunit"
evidence=ISS;TAS] [GO:0042254 "ribosome biogenesis" evidence=IBA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005773 "vacuole"
evidence=IDA] [GO:0005618 "cell wall" evidence=IDA] [GO:0022627
"cytosolic small ribosomal subunit" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
[GO:0005794 "Golgi apparatus" evidence=RCA] [GO:0001510 "RNA
methylation" evidence=RCA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646
PROSITE:PS50159 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005886 GO:GO:0009506 GO:GO:0005774 GO:GO:0005618
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0006413
GO:GO:0042254 GO:GO:0003735 GO:GO:0019843 EMBL:AL161515
EMBL:AL049482 GO:GO:0022627 SUPFAM:SSF46946 EMBL:AC003979
EMBL:Y12227 EMBL:AC015446 EMBL:AC079286 eggNOG:COG0099
PANTHER:PTHR10871 HOGENOM:HOG000039877 KO:K02964 EMBL:Z23165
EMBL:Z28701 EMBL:Z28702 EMBL:Z28962 EMBL:AF411781 EMBL:AF386941
EMBL:AF370463 EMBL:AY034965 EMBL:AY064680 EMBL:AY070029
EMBL:AY086334 EMBL:AY086800 EMBL:BT006539 EMBL:AY087428
IPI:IPI00532609 PIR:S46223 RefSeq:NP_173692.1 RefSeq:NP_192718.1
RefSeq:NP_564434.1 UniGene:At.179 UniGene:At.180 UniGene:At.20392
UniGene:At.33672 ProteinModelPortal:P34788 SMR:P34788 IntAct:P34788
STRING:P34788 PaxDb:P34788 PRIDE:P34788 EnsemblPlants:AT1G22780.1
EnsemblPlants:AT1G34030.1 EnsemblPlants:AT4G09800.1 GeneID:826569
GeneID:838884 GeneID:840300 KEGG:ath:AT1G22780 KEGG:ath:AT1G34030
KEGG:ath:AT4G09800 GeneFarm:799 GeneFarm:800 GeneFarm:802
TAIR:At1g22780 TAIR:At1g34030 TAIR:At4g09800 InParanoid:P34788
OMA:IKYIVRI PhylomeDB:P34788 ProtClustDB:CLSN2681852
Genevestigator:P34788 GermOnline:AT1G22780 Uniprot:P34788
Length = 152
Score = 101 (40.6 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 21/44 (47%), Positives = 30/44 (68%)
Query: 122 IRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
+ RLK+I+ +RG+RH GL RGQHTK R +GK V ++ K+
Sbjct: 111 LERLKKIRNHRGLRHYWGLRVRGQHTKTTGR--RGKTVGVSKKR 152
Score = 50 (22.7 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 49 RVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL--VDLKMENKITKDMSEEEL 98
RV + ++I ++L I G+GR A + D+ M NK ++S E+
Sbjct: 14 RVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDM-NKRAGELSAAEI 64
>UNIPROTKB|Q8H588 [details] [associations]
symbol:OJ1656_E11.108 "Putative ribosomal protein S18"
species:39947 "Oryza sativa Japonica Group" [GO:0003735 "structural
constituent of ribosome" evidence=IBA] [GO:0005829 "cytosol"
evidence=IBA] [GO:0006412 "translation" evidence=IBA] [GO:0015935
"small ribosomal subunit" evidence=IBA] [GO:0042254 "ribosome
biogenesis" evidence=IBA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646
PROSITE:PS50159 GO:GO:0005829 GO:GO:0005886 GO:GO:0005618
GO:GO:0005773 GO:GO:0005730 GO:GO:0006412 GO:GO:0042254
GO:GO:0003723 GO:GO:0003735 EMBL:CM000144 GO:GO:0022627
SUPFAM:SSF46946 GO:GO:0015935 PANTHER:PTHR10871 EMBL:AP003843
EMBL:AP004670 STRING:Q8H588 Uniprot:Q8H588
Length = 148
Score = 101 (40.6 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 21/44 (47%), Positives = 30/44 (68%)
Query: 122 IRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
+ RLK+I+ +RG+RH GL RGQHTK R +GK V ++ K+
Sbjct: 107 LERLKKIRNHRGLRHYWGLRVRGQHTKTTGR--RGKTVGVSKKR 148
Score = 47 (21.6 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 49 RVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL---VDLKMENKITKDMSEEEL 98
R+ + ++I ++L I G+GR R I D+ M NK +++ EEL
Sbjct: 10 RLLNTNVDGKQKIMFALTSIKGIGR-RFSNIACKKADIDM-NKRAGELTPEEL 60
>UNIPROTKB|Q8H590 [details] [associations]
symbol:OJ1656_E11.104 "Putative ribosomal protein S18A"
species:39947 "Oryza sativa Japonica Group" [GO:0003735 "structural
constituent of ribosome" evidence=IBA] [GO:0005829 "cytosol"
evidence=IBA] [GO:0006412 "translation" evidence=IBA] [GO:0015935
"small ribosomal subunit" evidence=IBA] [GO:0042254 "ribosome
biogenesis" evidence=IBA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646
PROSITE:PS50159 GO:GO:0005829 GO:GO:0005886 GO:GO:0005618
GO:GO:0005773 GO:GO:0005730 GO:GO:0006412 GO:GO:0042254
EMBL:DP000009 EMBL:AP008209 GO:GO:0003723 GO:GO:0003735
EMBL:AP008213 EMBL:CM000144 GO:GO:0022627 SUPFAM:SSF46946
GO:GO:0015935 PANTHER:PTHR10871 KO:K02964 OMA:IKYIVRI
ProtClustDB:CLSN2681852 EMBL:AP003843 EMBL:AP004670 EMBL:AC090871
EMBL:AC092076 EMBL:AK058881 EMBL:AK059548 RefSeq:NP_001051541.1
RefSeq:NP_001059007.2 UniGene:Os.13842 UniGene:Os.88187
STRING:Q8H590 EnsemblPlants:LOC_Os03g58050.1
EnsemblPlants:LOC_Os07g07709.1 GeneID:4334407 GeneID:4342526
KEGG:osa:4334407 KEGG:osa:4342526 Uniprot:Q8H590
Length = 152
Score = 101 (40.6 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 21/44 (47%), Positives = 30/44 (68%)
Query: 122 IRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
+ RLK+I+ +RG+RH GL RGQHTK R +GK V ++ K+
Sbjct: 111 LERLKKIRNHRGLRHYWGLRVRGQHTKTTGR--RGKTVGVSKKR 152
Score = 48 (22.0 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 49 RVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL---VDLKMENKITKDMSEEEL 98
R+ + ++I ++L I GVGR R I D+ M NK +++ EEL
Sbjct: 14 RLLNTNVDGKQKIMFALTSIKGVGR-RFSNIACKKADIDM-NKRAGELTPEEL 64
>UNIPROTKB|Q755U6 [details] [associations]
symbol:AER422C "AER422Cp" species:284811 "Ashbya gossypii
ATCC 10895" [GO:0003735 "structural constituent of ribosome"
evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA] [GO:0006412
"translation" evidence=IBA] [GO:0015935 "small ribosomal subunit"
evidence=IBA] [GO:0042254 "ribosome biogenesis" evidence=IBA]
[GO:0005829 "cytosol" evidence=IBA] InterPro:IPR001892
InterPro:IPR010979 InterPro:IPR018269 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 GO:GO:0005739
GO:GO:0006412 GO:GO:0042254 GO:GO:0003723 GO:GO:0003735
EMBL:AE016818 GenomeReviews:AE016818_GR SUPFAM:SSF46946
GO:GO:0015935 KO:K02952 PANTHER:PTHR10871 HOGENOM:HOG000039878
OrthoDB:EOG4WHCWG OMA:MTIEGDA RefSeq:NP_985277.1
ProteinModelPortal:Q755U6 STRING:Q755U6 EnsemblFungi:AAS53101
GeneID:4621496 KEGG:ago:AGOS_AER422C PhylomeDB:Q755U6
Uniprot:Q755U6
Length = 144
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 25/88 (28%), Positives = 45/88 (51%)
Query: 69 HGVGRTRARQILVDLKMENKIT-KDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKE 127
+G+G + ++ L + + + ++E +++ + E+SK IE D R I +
Sbjct: 25 YGIGLKTSERLCAKLGLYPWMRMQSLTEPQIMAMSTELSKMTIEDDARAIVKENIALKRR 84
Query: 128 IQCYRGIRHIQGLPCRGQHTKNNCRTLK 155
I Y G+RH GLP GQ T+ N +T +
Sbjct: 85 IGSYAGLRHAMGLPVNGQRTRTNAKTAR 112
>UNIPROTKB|F1S4M2 [details] [associations]
symbol:RPS18 "40S ribosomal protein S18" species:9823 "Sus
scrofa" [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001892 InterPro:IPR010979 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS50159 GO:GO:0006412 GO:GO:0003723
GO:GO:0005840 GO:GO:0003735 SUPFAM:SSF46946 PANTHER:PTHR10871
GeneTree:ENSGT00390000012691 EMBL:CU655822
Ensembl:ENSSSCT00000009592 OMA:ATTAIKG Uniprot:F1S4M2
Length = 152
Score = 90 (36.7 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 122 IRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGK 164
+ RLK+I+ +RG+RH GL GQHTK R +G V ++ K
Sbjct: 111 VERLKKIRAHRGLRHFWGLRVGGQHTKTTGR--RGHTVRVSKK 151
Score = 62 (26.9 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 22/67 (32%), Positives = 33/67 (49%)
Query: 49 RVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL----VDL-KMENKITKDMSEEELITIRD 103
RV I ++I ++ I GVGR A +L +DL K ++T+D E +ITI
Sbjct: 14 RVLNTTIDGWQKIAFATTAIKGVGRRYAHVVLRKADIDLTKRAGELTED-EVEHVITIMQ 72
Query: 104 EVSKYMI 110
+Y I
Sbjct: 73 NPGQYKI 79
>SGD|S000002858 [details] [associations]
symbol:RPS18A "Protein component of the small (40S) ribosomal
subunit" species:4932 "Saccharomyces cerevisiae" [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0022627 "cytosolic small
ribosomal subunit" evidence=NAS;IBA] [GO:0002181 "cytoplasmic
translation" evidence=NAS] [GO:0000447 "endonucleolytic cleavage in
ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0006407 "rRNA export from nucleus" evidence=IGI]
[GO:0003735 "structural constituent of ribosome" evidence=IEA;NAS]
[GO:0019843 "rRNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0006412 "translation"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646
PROSITE:PS50159 SGD:S000002858 EMBL:U33007 GO:GO:0005739
EMBL:BK006938 GO:GO:0003735 GO:GO:0002181 GO:GO:0019843
GO:GO:0000447 PDB:1S1H PDBsum:1S1H GO:GO:0022627 SUPFAM:SSF46946
PDB:3IZB PDB:3O2Z PDB:3O30 PDB:3U5C PDB:3U5G PDBsum:3IZB
PDBsum:3O2Z PDBsum:3O30 PDBsum:3U5C PDBsum:3U5G GO:GO:0006407
HAMAP:MF_01315 PANTHER:PTHR10871 PDB:1K5X PDBsum:1K5X PIR:S50886
RefSeq:NP_010738.1 RefSeq:NP_013686.1 ProteinModelPortal:P0CX55
SMR:P0CX55 EnsemblFungi:YDR450W EnsemblFungi:YML026C GeneID:852061
GeneID:854982 KEGG:sce:YDR450W KEGG:sce:YML026C KO:K02964
EvolutionaryTrace:P0CX55 NextBio:970337 ArrayExpress:P0CX55
GermOnline:YDR450W Uniprot:P0CX55
Length = 146
Score = 93 (37.8 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 122 IRRLKEIQCYRGIRHIQGLPCRGQHTKNNCR 152
+ RLK+I+ +RGIRH GL RGQHTK R
Sbjct: 113 LERLKKIRAHRGIRHFWGLRVRGQHTKTTGR 143
Score = 54 (24.1 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 19/67 (28%), Positives = 32/67 (47%)
Query: 49 RVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL----VDL-KMENKITKDMSEEELITIRD 103
R+ + N +I Y+L I GVGR + + VDL K ++T++ E ++ I
Sbjct: 16 RLLNTNVDGNIKIVYALTTIKGVGRRYSNLVCKKADVDLHKRAGELTQE-ELERIVQIMQ 74
Query: 104 EVSKYMI 110
+ Y I
Sbjct: 75 NPTHYKI 81
>SGD|S000004488 [details] [associations]
symbol:RPS18B "Protein component of the small (40S) ribosomal
subunit" species:4932 "Saccharomyces cerevisiae" [GO:0006407 "rRNA
export from nucleus" evidence=IGI] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0002181 "cytoplasmic translation" evidence=NAS]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA;NAS] [GO:0022627 "cytosolic
small ribosomal subunit" evidence=IBA;NAS] [GO:0005622
"intracellular" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0019843
"rRNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0000447
"endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S
rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S
rRNA, LSU-rRNA)" evidence=IMP] InterPro:IPR001892
InterPro:IPR010979 InterPro:IPR018269 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 SGD:S000004488
GO:GO:0005739 EMBL:BK006946 GO:GO:0003735 GO:GO:0002181 EMBL:Z46659
GO:GO:0019843 GO:GO:0000447 GO:GO:0022627 SUPFAM:SSF46946
GO:GO:0006407 HAMAP:MF_01315 PANTHER:PTHR10871 PIR:S50886
RefSeq:NP_010738.1 RefSeq:NP_013686.1 EnsemblFungi:YDR450W
EnsemblFungi:YML026C GeneID:852061 GeneID:854982 KEGG:sce:YDR450W
KEGG:sce:YML026C KO:K02964 NextBio:970337 EMBL:X62392
ProteinModelPortal:P0CX56 SMR:P0CX56 GeneTree:ENSGT00390000012691
ArrayExpress:P0CX56 GermOnline:YML026C Uniprot:P0CX56
Length = 146
Score = 93 (37.8 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 122 IRRLKEIQCYRGIRHIQGLPCRGQHTKNNCR 152
+ RLK+I+ +RGIRH GL RGQHTK R
Sbjct: 113 LERLKKIRAHRGIRHFWGLRVRGQHTKTTGR 143
Score = 54 (24.1 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 19/67 (28%), Positives = 32/67 (47%)
Query: 49 RVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL----VDL-KMENKITKDMSEEELITIRD 103
R+ + N +I Y+L I GVGR + + VDL K ++T++ E ++ I
Sbjct: 16 RLLNTNVDGNIKIVYALTTIKGVGRRYSNLVCKKADVDLHKRAGELTQE-ELERIVQIMQ 74
Query: 104 EVSKYMI 110
+ Y I
Sbjct: 75 NPTHYKI 81
>UNIPROTKB|J3JS69 [details] [associations]
symbol:RPS18 "HCG1777176, isoform CRA_a" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0005581 "collagen" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
InterPro:IPR001892 InterPro:IPR010979 InterPro:IPR018269
Pfam:PF00416 PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159
EMBL:CH471081 GO:GO:0006412 EMBL:CH471052 GO:GO:0003723
GO:GO:0005840 GO:GO:0003735 GO:GO:0005581 EMBL:AL031228
EMBL:AL645940 EMBL:AL844527 EMBL:AL662827 EMBL:AL662820
EMBL:CR759817 EMBL:AL713971 SUPFAM:SSF46946 PANTHER:PTHR10871
UniGene:Hs.448854 UniGene:Hs.627414 HGNC:HGNC:10401
Ensembl:ENST00000474973 Ensembl:ENST00000476288
Ensembl:ENST00000477055 Ensembl:ENST00000484321
Ensembl:ENST00000486781 Ensembl:ENST00000494232 Uniprot:J3JS69
Length = 82
Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 21/44 (47%), Positives = 30/44 (68%)
Query: 122 IRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
+ RLK+I+ +RG+RH GL RGQHTK R +G+ V ++ KK
Sbjct: 41 LERLKKIRAHRGLRHFWGLRVRGQHTKTTGR--RGRTVGVSKKK 82
>RGD|1562404 [details] [associations]
symbol:RGD1562404 "similar to ribosomal protein S18"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IBA] [GO:0005829 "cytosol" evidence=IBA] [GO:0006412
"translation" evidence=IBA] [GO:0015935 "small ribosomal subunit"
evidence=IBA] [GO:0042254 "ribosome biogenesis" evidence=IBA]
InterPro:IPR001892 InterPro:IPR010979 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS50159 RGD:1562404 GO:GO:0005829
GO:GO:0006412 GO:GO:0042254 GO:GO:0003723 GO:GO:0003735
SUPFAM:SSF46946 GO:GO:0015935 PANTHER:PTHR10871
GeneTree:ENSGT00390000012691 OrthoDB:EOG4KSPM2 IPI:IPI00214217
RefSeq:XP_001058023.1 RefSeq:XP_234780.1 PRIDE:D3ZII2
Ensembl:ENSRNOT00000051652 GeneID:314556 KEGG:rno:314556
UCSC:RGD:1562404 CTD:314556 OMA:HFWDLRV NextBio:667837
Uniprot:D3ZII2
Length = 152
Score = 84 (34.6 bits), Expect = 6.8e-06, Sum P(2) = 6.8e-06
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 122 IRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
+ RLK+I+ +RG+RH L GQH+K R +G V ++ KK
Sbjct: 111 LERLKKIRAHRGLRHFWDLRVGGQHSKTTGR--RGHTVGVSKKK 152
Score = 65 (27.9 bits), Expect = 6.8e-06, Sum P(2) = 6.8e-06
Identities = 22/67 (32%), Positives = 33/67 (49%)
Query: 49 RVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL----VDL-KMENKITKDMSEEELITIRD 103
RV I +I +++ I GVGR A +L +DL K ++T+D E +ITI
Sbjct: 14 RVLNTNIDGRWKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTED-EVERVITIMQ 72
Query: 104 EVSKYMI 110
+Y I
Sbjct: 73 NPRQYKI 79
>UNIPROTKB|Q9GT46 [details] [associations]
symbol:IrpS18 "Ribosomal protein S18" species:7165
"Anopheles gambiae" [GO:0003735 "structural constituent of
ribosome" evidence=IBA] [GO:0005829 "cytosol" evidence=IBA]
[GO:0006412 "translation" evidence=IBA] [GO:0015935 "small
ribosomal subunit" evidence=IBA] [GO:0042254 "ribosome biogenesis"
evidence=IBA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 Pfam:PF00416 PROSITE:PS00646 PROSITE:PS50159
GO:GO:0005829 GO:GO:0006412 GO:GO:0042254 GO:GO:0003723
GO:GO:0003735 SUPFAM:SSF46946 GO:GO:0015935 eggNOG:COG0099
PANTHER:PTHR10871 EMBL:AF283268 ProteinModelPortal:Q9GT46
STRING:Q9GT46 InParanoid:Q9GT46 ArrayExpress:Q9GT46 Uniprot:Q9GT46
Length = 46
Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 122 IRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
+ RLK I +RG+RH GL RGQHTK R +G+ V ++ KK
Sbjct: 5 LERLKRIHAHRGMRHYWGLRVRGQHTKTTGR--RGRTVGVSKKK 46
>UNIPROTKB|Q8TRR2 [details] [associations]
symbol:rps13 "30S ribosomal protein S13" species:188937
"Methanosarcina acetivorans C2A" [GO:0003735 "structural
constituent of ribosome" evidence=IBA] [GO:0005829 "cytosol"
evidence=IBA] [GO:0006412 "translation" evidence=IBA] [GO:0015935
"small ribosomal subunit" evidence=IBA] [GO:0042254 "ribosome
biogenesis" evidence=IBA] InterPro:IPR001892 InterPro:IPR010979
InterPro:IPR018269 InterPro:IPR019977 Pfam:PF00416
PIRSF:PIRSF002134 PROSITE:PS00646 PROSITE:PS50159 GO:GO:0005829
GO:GO:0006412 GO:GO:0042254 GO:GO:0003735 GO:GO:0019843
EMBL:AE010299 GenomeReviews:AE010299_GR SUPFAM:SSF46946
GO:GO:0015935 eggNOG:COG0099 KO:K02952 HAMAP:MF_01315
PANTHER:PTHR10871 RefSeq:NP_616052.1 ProteinModelPortal:Q8TRR2
GeneID:1472997 KEGG:mac:MA1108 OMA:FQHILRI ProtClustDB:PRK04053
BioCyc:MACE188937:GI2O-1171-MONOMER TIGRFAMs:TIGR03629
Uniprot:Q8TRR2
Length = 162
Score = 101 (40.6 bits), Expect = 0.00035, P = 0.00035
Identities = 25/71 (35%), Positives = 42/71 (59%)
Query: 95 EEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTL 154
+++L T +D K+++ D+ I LK+++ YRG+RH +GL RGQ TK+ R
Sbjct: 97 QKDLATGQD---KHLLGTDILLTFREDINNLKKVRAYRGLRHERGLKVRGQRTKSTGR-- 151
Query: 155 KGKRVAIAGKK 165
+G V ++ KK
Sbjct: 152 RGSTVGVSRKK 162
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.136 0.397 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 169 169 0.00082 108 3 11 22 0.37 32
31 0.47 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 81
No. of states in DFA: 544 (58 KB)
Total size of DFA: 136 KB (2086 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 16.00u 0.11s 16.11t Elapsed: 00:00:01
Total cpu time: 16.01u 0.11s 16.12t Elapsed: 00:00:01
Start: Fri May 10 04:25:06 2013 End: Fri May 10 04:25:07 2013