BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030930
(169 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P42732|RR13_ARATH 30S ribosomal protein S13, chloroplastic OS=Arabidopsis thaliana
GN=RPS13 PE=2 SV=1
Length = 169
Score = 253 bits (647), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 120/154 (77%), Positives = 134/154 (87%)
Query: 1 MVQTLAMPVAPALSVICNGHNNNLLTNASLSFPVSKQPQYPGLSIQCARVGGVEIPNNKR 60
M Q +AMPVA +LS+ICN +N L+ +L+ P S P LSI+CARVGGVEIP NKR
Sbjct: 1 MAQMVAMPVAHSLSLICNWAKSNPLSRNTLALPASNTPNKQSLSIRCARVGGVEIPANKR 60
Query: 61 IEYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITIRDEVSKYMIEGDLRRFNAL 120
IEYSLQYIHG+GRTRARQILVDL+MENKITKDM+EEELI +RDEVSKYMIEGDLRRFNAL
Sbjct: 61 IEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEELIILRDEVSKYMIEGDLRRFNAL 120
Query: 121 AIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTL 154
AI+RLKEIQCYRG+RHIQGLPCRGQ TKNNCRTL
Sbjct: 121 AIKRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTL 154
>sp|P82163|RR13_SPIOL 30S ribosomal protein S13, chloroplastic OS=Spinacia oleracea
GN=RPS13 PE=1 SV=2
Length = 145
Score = 168 bits (426), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 82/132 (62%), Positives = 103/132 (78%), Gaps = 12/132 (9%)
Query: 27 NASLSFPVSKQPQ--YPGLSIQCARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLK 84
++S+SFP K+ + GL I+C R+GGVEIPN+KR+EYSLQYIHG+GR+R+RQIL+DL
Sbjct: 24 SSSVSFPAPKKGGIGHGGLQIECIRIGGVEIPNHKRVEYSLQYIHGIGRSRSRQILLDLN 83
Query: 85 MENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRG 144
+NK+TKD+SEEE+I +R E +RFN +AI RLKEI+CYRGIRH GLP RG
Sbjct: 84 FDNKVTKDLSEEEVIILRKE----------KRFNRVAIERLKEIRCYRGIRHKLGLPVRG 133
Query: 145 QHTKNNCRTLKG 156
Q TKNNCRTLKG
Sbjct: 134 QRTKNNCRTLKG 145
>sp|Q9CA19|RT13_ARATH Small ribosomal subunit protein S13, mitochondrial OS=Arabidopsis
thaliana GN=RPS13 PE=2 SV=1
Length = 154
Score = 136 bits (343), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/150 (46%), Positives = 98/150 (65%), Gaps = 4/150 (2%)
Query: 24 LLTNASLSFPVS----KQPQYPGLSIQCARVGGVEIPNNKRIEYSLQYIHGVGRTRARQI 79
L +A+ F +S + + GL +Q RVG E+PNNK ++ LQ ++G+GR ++ Q+
Sbjct: 4 LRRSATTLFDISQSLLRNVTFHGLRVQGIRVGNAEVPNNKPLKTGLQEVYGIGRRKSHQV 63
Query: 80 LVDLKMENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQG 139
L L + NK+ +D++ +ELI +R+EV ++ +LRR I+RL E+ CYRG RH G
Sbjct: 64 LCHLGITNKLARDLTGKELIDLREEVGQHQHGDELRRRVGSEIQRLVEVDCYRGSRHRHG 123
Query: 140 LPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 169
LPCRGQ T N RT KGK VAIAGKKKAPR
Sbjct: 124 LPCRGQRTSTNARTKKGKAVAIAGKKKAPR 153
>sp|Q03EE0|RS13_PEDPA 30S ribosomal protein S13 OS=Pediococcus pentosaceus (strain ATCC
25745 / 183-1w) GN=rpsM PE=3 SV=1
Length = 121
Score = 129 bits (324), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 64/121 (52%), Positives = 88/121 (72%), Gaps = 1/121 (0%)
Query: 47 CARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEV 105
AR+ GV++P +KRI L YI G+G T A++IL D ++ I +D++ ++ IR EV
Sbjct: 1 MARIAGVDLPRDKRIVIGLTYIFGIGNTTAQKILKDAEVSEDIRVRDLTADQEDKIRAEV 60
Query: 106 SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
Y++EGDLRR +L I+RL+EI YRG+RH +GLP RGQHTKNN RT KGK+V+IAG+K
Sbjct: 61 DNYLVEGDLRRTVSLNIKRLQEIGSYRGMRHRRGLPVRGQHTKNNARTRKGKKVSIAGRK 120
Query: 166 K 166
K
Sbjct: 121 K 121
>sp|Q9RDV8|RS13_MYCGA 30S ribosomal protein S13 OS=Mycoplasma gallisepticum (strain R(low
/ passage 15 / clone 2)) GN=rpsM PE=3 SV=3
Length = 124
Score = 129 bits (324), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 66/120 (55%), Positives = 87/120 (72%), Gaps = 1/120 (0%)
Query: 47 CARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEV 105
AR+ G++IPNNKR+E SL YI+G+G+ RA++IL K++ NK KD+S+EEL IR
Sbjct: 1 MARILGIDIPNNKRVEISLTYIYGIGKPRAQEILRKAKIDFNKRVKDLSDEELALIRSVA 60
Query: 106 SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
S Y++EGDLRR AL I+RL E+ Y G+RH +GLP RGQ TK+N RT KG R +A KK
Sbjct: 61 STYVLEGDLRRDVALNIKRLMEVGSYAGLRHRRGLPVRGQRTKSNARTRKGPRKTVANKK 120
>sp|A5IYW1|RS13_MYCAP 30S ribosomal protein S13 OS=Mycoplasma agalactiae (strain PG2)
GN=rpsM PE=3 SV=1
Length = 123
Score = 128 bits (322), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/119 (54%), Positives = 86/119 (72%), Gaps = 1/119 (0%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVS 106
AR+ +EIPNNKR+ SL YI+G+GRT A++I K++ I KD+SE +L IR+
Sbjct: 2 ARILNIEIPNNKRVVISLTYIYGIGRTSAQEICAKAKIDENIRVKDLSEAQLSAIREIAK 61
Query: 107 KYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
+Y+ EGDLRR +L I+RL E++CYRGIRH +GLP RGQ TK+N RT KG R +AGKK
Sbjct: 62 EYVTEGDLRREVSLNIKRLMEVKCYRGIRHRKGLPVRGQSTKSNARTRKGPRKTVAGKK 120
>sp|Q65P81|RS13_BACLD 30S ribosomal protein S13 OS=Bacillus licheniformis (strain DSM 13
/ ATCC 14580) GN=rpsM PE=3 SV=1
Length = 121
Score = 126 bits (317), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 67/121 (55%), Positives = 86/121 (71%), Gaps = 1/121 (0%)
Query: 47 CARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEV 105
AR+ GV+IP +KR+ SL YI G+GRT A+QIL + + E+ +D++EEEL IRD +
Sbjct: 1 MARIAGVDIPRDKRVVISLTYIFGIGRTTAQQILKEAGVSEDTRVRDLTEEELGKIRDVI 60
Query: 106 SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
K +EGDLRR +L I+RL EI YRGIRH +GLP RGQ+TKNN RT KG R +A KK
Sbjct: 61 DKLKVEGDLRREVSLNIKRLIEIGSYRGIRHRRGLPVRGQNTKNNARTRKGPRRTVANKK 120
Query: 166 K 166
K
Sbjct: 121 K 121
>sp|O50632|RS13_BACHD 30S ribosomal protein S13 OS=Bacillus halodurans (strain ATCC
BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
GN=rpsM PE=3 SV=1
Length = 121
Score = 126 bits (316), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 66/121 (54%), Positives = 86/121 (71%), Gaps = 1/121 (0%)
Query: 47 CARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEV 105
AR+ GV+IP +KR+ SL YI+GVGR+ A++IL + EN +D++EEEL IR V
Sbjct: 1 MARIAGVDIPRDKRVVISLTYIYGVGRSTAQEILAKANVSENTRVRDLTEEELGRIRSAV 60
Query: 106 SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
++ +EGDLRR +L I+RL EI YRGIRH +GLP RGQ+TKNN RT KG R +A KK
Sbjct: 61 EEFKVEGDLRREVSLNIKRLIEIGAYRGIRHRRGLPVRGQNTKNNSRTRKGPRRTVANKK 120
Query: 166 K 166
K
Sbjct: 121 K 121
>sp|A9NEF8|RS13_ACHLI 30S ribosomal protein S13 OS=Acholeplasma laidlawii (strain PG-8A)
GN=rpsM PE=3 SV=1
Length = 124
Score = 126 bits (316), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 63/124 (50%), Positives = 89/124 (71%), Gaps = 1/124 (0%)
Query: 47 CARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEV 105
AR+ GV+IP KR+ SLQYI+G+G+T A+++L + + I KD+++++L IR EV
Sbjct: 1 MARIAGVDIPTQKRVVISLQYIYGIGQTTAQEVLKNANVSEDIRVKDLNDDQLSAIRGEV 60
Query: 106 SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
+K + EGDLRR + L I+RL EI YRGIRH +GLP GQ+T+NN RT KGK A+ GKK
Sbjct: 61 AKIVTEGDLRRESTLNIKRLMEIGSYRGIRHRKGLPVNGQNTRNNARTRKGKPKAVTGKK 120
Query: 166 KAPR 169
+A +
Sbjct: 121 QAGK 124
>sp|B3PMM3|RS13_MYCA5 30S ribosomal protein S13 OS=Mycoplasma arthritidis (strain
158L3-1) GN=rpsM PE=3 SV=1
Length = 122
Score = 126 bits (316), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 71/119 (59%), Positives = 82/119 (68%), Gaps = 1/119 (0%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVS 106
ARV VEIPN KR SL YI G+G+T A QIL D + ENK + +SEEEL IR+E
Sbjct: 2 ARVLNVEIPNKKRAVISLTYIFGIGKTLASQILKDANVDENKKVESLSEEELTRIREEAK 61
Query: 107 KYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
KY+ EGDLRR L I+RL EI+ YRGIRH +GLP RGQ T+ N RT KG R IAGKK
Sbjct: 62 KYVTEGDLRREINLNIKRLMEIKSYRGIRHRKGLPVRGQCTQKNARTRKGPRKTIAGKK 120
>sp|B1HMV7|RS13_LYSSC 30S ribosomal protein S13 OS=Lysinibacillus sphaericus (strain
C3-41) GN=rpsM PE=3 SV=1
Length = 121
Score = 126 bits (316), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 62/121 (51%), Positives = 87/121 (71%), Gaps = 1/121 (0%)
Query: 47 CARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEV 105
AR+ GV+IP +KR+ SL YI G+G+T A+++L D + E+ +D++E+EL IR+++
Sbjct: 1 MARIAGVDIPRDKRVVISLTYIFGIGKTTAQKVLADAGISEDTRVRDLTEDELNKIREQL 60
Query: 106 SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
Y +EGDLRR +L I+RL EI +RGIRH +GLP RGQ+TKNN RT KG R +A KK
Sbjct: 61 DSYKLEGDLRRETSLNIKRLMEIGSFRGIRHRRGLPVRGQNTKNNARTRKGPRKTVANKK 120
Query: 166 K 166
K
Sbjct: 121 K 121
>sp|Q8EUD6|RS13_MYCPE 30S ribosomal protein S13 OS=Mycoplasma penetrans (strain HF-2)
GN=rpsM PE=3 SV=1
Length = 124
Score = 125 bits (315), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 68/119 (57%), Positives = 85/119 (71%), Gaps = 1/119 (0%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVS 106
AR+ GV+IPNNKR+ SL YI G+G++R+++IL K+ ENK +SEEEL TIR S
Sbjct: 2 ARILGVDIPNNKRVVISLTYIFGIGKSRSQEILSKAKIDENKKVSALSEEELATIRKIAS 61
Query: 107 KYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
+Y+IEGDLRR A+ I+RL EI YRGIRH + LP RGQ TK N RT KG R +A KK
Sbjct: 62 EYVIEGDLRREVAMNIKRLMEIGSYRGIRHRRNLPVRGQRTKCNARTRKGPRKTVANKK 120
>sp|A5FZU3|RS13_ACICJ 30S ribosomal protein S13 OS=Acidiphilium cryptum (strain JF-5)
GN=rpsM PE=3 SV=1
Length = 125
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/124 (53%), Positives = 91/124 (73%), Gaps = 2/124 (1%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVS 106
AR+ GV IP+NKR+ SL+YI+G+G +AR+I L++ E+K +SE+E++ IR+ +
Sbjct: 2 ARIAGVNIPSNKRVLISLRYIYGIGPAKAREICQSLEIGEDKRVNQLSEDEIMKIRELID 61
Query: 107 K-YMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
+ Y +EGDLRR A+ I+RL ++ CYRG+RH +GLP RGQ T N RT KGK VAIAGKK
Sbjct: 62 RDYRVEGDLRREVAMNIKRLVDLGCYRGLRHRKGLPVRGQRTHTNARTRKGKAVAIAGKK 121
Query: 166 KAPR 169
KA R
Sbjct: 122 KATR 125
>sp|A0PXX2|RS13_CLONN 30S ribosomal protein S13 OS=Clostridium novyi (strain NT) GN=rpsM
PE=3 SV=1
Length = 123
Score = 125 bits (313), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/120 (55%), Positives = 87/120 (72%), Gaps = 2/120 (1%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVS 106
AR+ G+++P KR+E L YI+G+G R+R+IL + + + KD+SEEE+ TIRD +
Sbjct: 2 ARIAGIDLPKEKRVEVGLTYIYGIGINRSREILKETGVNPDTRVKDLSEEEVNTIRDYIG 61
Query: 107 K-YMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
K ++IEGDLRR AL I+RL EI CYRGIRH +GLP RGQ TK N RT KG + AI+GKK
Sbjct: 62 KNFVIEGDLRRTIALDIKRLVEIGCYRGIRHRRGLPVRGQKTKTNARTRKGPKRAISGKK 121
>sp|Q6KI31|RS13_MYCMO 30S ribosomal protein S13 OS=Mycoplasma mobile (strain ATCC 43663 /
163K / NCTC 11711) GN=rpsM PE=3 SV=1
Length = 122
Score = 124 bits (312), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/120 (53%), Positives = 85/120 (70%), Gaps = 1/120 (0%)
Query: 47 CARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEV 105
AR+ VEIPNNKR+ SL Y++G+GR+ ++QIL + ++ I KD+SEE+L IR+
Sbjct: 1 MARILNVEIPNNKRVIISLTYVYGIGRSLSKQILAEANIDENIRVKDLSEEDLTKIRNIA 60
Query: 106 SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
S++ EGDLRR L I+RL EI+ YRGIRH +GLP RGQ T+ N RT KG R +AGKK
Sbjct: 61 SRFTTEGDLRREIQLNIKRLMEIKSYRGIRHRKGLPVRGQVTQKNARTRKGPRKTVAGKK 120
>sp|P20282|RS13_BACSU 30S ribosomal protein S13 OS=Bacillus subtilis (strain 168) GN=rpsM
PE=1 SV=3
Length = 121
Score = 124 bits (311), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/121 (53%), Positives = 86/121 (71%), Gaps = 1/121 (0%)
Query: 47 CARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEV 105
AR+ GV+IP +KR+ SL YI G+GRT A+Q+L + + E+ +D++EEEL IRD +
Sbjct: 1 MARIAGVDIPRDKRVVISLTYIFGIGRTTAQQVLKEAGVSEDTRVRDLTEEELGKIRDII 60
Query: 106 SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
K +EGDLRR +L I+RL EI YRGIRH +GLP RGQ++KNN RT KG R +A KK
Sbjct: 61 DKLKVEGDLRREVSLNIKRLIEIGSYRGIRHRRGLPVRGQNSKNNARTRKGPRRTVANKK 120
Query: 166 K 166
K
Sbjct: 121 K 121
>sp|A7Z0R3|RS13_BACA2 30S ribosomal protein S13 OS=Bacillus amyloliquefaciens (strain
FZB42) GN=rpsM PE=3 SV=1
Length = 121
Score = 124 bits (311), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 64/121 (52%), Positives = 86/121 (71%), Gaps = 1/121 (0%)
Query: 47 CARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEV 105
AR+ GV+IP +KR+ SL Y+ G+GRT A+Q+L + + E+ +D++EEEL IRD +
Sbjct: 1 MARIAGVDIPRDKRVVISLTYVFGIGRTTAQQVLKEAGVSEDTRVRDLTEEELGKIRDVI 60
Query: 106 SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
K +EGDLRR +L I+RL EI YRGIRH +GLP RGQ++KNN RT KG R +A KK
Sbjct: 61 DKLKVEGDLRREVSLNIKRLIEIGSYRGIRHRRGLPVRGQNSKNNARTRKGPRRTVANKK 120
Query: 166 K 166
K
Sbjct: 121 K 121
>sp|Q8G3Z5|RS13_BIFLO 30S ribosomal protein S13 OS=Bifidobacterium longum (strain NCC
2705) GN=rpsM PE=3 SV=1
Length = 125
Score = 124 bits (310), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 67/124 (54%), Positives = 86/124 (69%), Gaps = 2/124 (1%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEV- 105
AR+ GV+IPN KRIE +L YI GVGRTRA++ L + I KD+++E+LIT+RD +
Sbjct: 2 ARLAGVDIPNEKRIEIALTYIFGVGRTRAKETLAATGISPDIRVKDLTDEQLITLRDYLE 61
Query: 106 SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
+ Y IEGDLRR IRR +I CY+G RH +GLP RGQ TK N RT KG + +AGKK
Sbjct: 62 ANYKIEGDLRREVDADIRRKIQINCYQGQRHRKGLPVRGQRTKTNARTRKGPKRTVAGKK 121
Query: 166 KAPR 169
KA +
Sbjct: 122 KATK 125
>sp|B3DQD8|RS13_BIFLD 30S ribosomal protein S13 OS=Bifidobacterium longum (strain DJO10A)
GN=rpsM PE=3 SV=1
Length = 125
Score = 124 bits (310), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 67/124 (54%), Positives = 86/124 (69%), Gaps = 2/124 (1%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEV- 105
AR+ GV+IPN KRIE +L YI GVGRTRA++ L + I KD+++E+LIT+RD +
Sbjct: 2 ARLAGVDIPNEKRIEIALTYIFGVGRTRAKETLAATGISPDIRVKDLTDEQLITLRDYLE 61
Query: 106 SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
+ Y IEGDLRR IRR +I CY+G RH +GLP RGQ TK N RT KG + +AGKK
Sbjct: 62 ANYKIEGDLRREVDADIRRKIQINCYQGQRHRKGLPVRGQRTKTNARTRKGPKRTVAGKK 121
Query: 166 KAPR 169
KA +
Sbjct: 122 KATK 125
>sp|A8F9B0|RS13_BACP2 30S ribosomal protein S13 OS=Bacillus pumilus (strain SAFR-032)
GN=rpsM PE=3 SV=1
Length = 121
Score = 124 bits (310), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 64/121 (52%), Positives = 86/121 (71%), Gaps = 1/121 (0%)
Query: 47 CARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEV 105
AR+ GV+IP +KR+ SL Y+ G+GRT A+Q+L + + E+ +D++E+EL IRD +
Sbjct: 1 MARIAGVDIPRDKRVVISLTYVFGIGRTTAQQVLKEAGVSEDTRVRDLTEDELGKIRDII 60
Query: 106 SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
K +EGDLRR +L I+RL EI YRGIRH +GLP RGQ+TKNN RT KG R +A KK
Sbjct: 61 DKLKVEGDLRREVSLNIKRLIEIGSYRGIRHRRGLPVRGQNTKNNARTRKGPRRTVANKK 120
Query: 166 K 166
K
Sbjct: 121 K 121
>sp|A9B434|RS13_HERA2 30S ribosomal protein S13 OS=Herpetosiphon aurantiacus (strain ATCC
23779 / DSM 785) GN=rpsM PE=3 SV=1
Length = 127
Score = 124 bits (310), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 66/125 (52%), Positives = 89/125 (71%), Gaps = 3/125 (2%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVS 106
AR+ GV+IP NKR+E SL YI+G+GRT + +IL + N KD++E+E+I +R+ +
Sbjct: 2 ARISGVDIPRNKRVEISLTYIYGIGRTTSTEILARTNINPNVRVKDLTEDEVIRLREIID 61
Query: 107 K-YMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKR-VAIAGK 164
+ Y +EGDLRR L I+RL +I CYRGIRH +GLP RGQ TK N RT +GK+ AI GK
Sbjct: 62 QDYTVEGDLRRAVQLNIKRLMDIGCYRGIRHRKGLPLRGQRTKTNARTRRGKKGAAIGGK 121
Query: 165 KKAPR 169
KKA +
Sbjct: 122 KKATK 126
>sp|C5D3U2|RS13_GEOSW 30S ribosomal protein S13 OS=Geobacillus sp. (strain WCH70) GN=rpsM
PE=3 SV=1
Length = 121
Score = 124 bits (310), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 64/120 (53%), Positives = 88/120 (73%), Gaps = 1/120 (0%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVS 106
AR+ GV+IP +KR+ SL YI+G+G++ A++IL + + E+ +D++EEEL IR+ V
Sbjct: 2 ARIAGVDIPRDKRVVISLTYIYGIGKSTAKKILAEAGVSEDTRVRDLTEEELGRIREIVG 61
Query: 107 KYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 166
+ +EGDLRR +L I+RL EI CYRGIRH +GLP RGQ+TKNN RT KG R +A KKK
Sbjct: 62 RLKVEGDLRREVSLNIKRLIEIGCYRGIRHRRGLPVRGQNTKNNARTRKGPRRTVANKKK 121
>sp|B0RZT3|RS13_FINM2 30S ribosomal protein S13 OS=Finegoldia magna (strain ATCC 29328)
GN=rpsM PE=3 SV=1
Length = 116
Score = 124 bits (310), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 61/112 (54%), Positives = 80/112 (71%), Gaps = 1/112 (0%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVS 106
AR+ GV++PN+KR+E L I+G+GR + +IL L + + KD++E EL IR+E+
Sbjct: 2 ARIQGVDLPNDKRVEIGLTAIYGIGRQSSNKILAKLGINPDTRVKDLTESELSDIRNELD 61
Query: 107 KYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKR 158
Y+ EGDLRR A+ I+RLKEI CYRG RH +GLP RGQHTKNN RT KG R
Sbjct: 62 NYLTEGDLRRDVAMNIKRLKEINCYRGSRHKKGLPVRGQHTKNNARTRKGPR 113
>sp|Q6F1W9|RS13_MESFL 30S ribosomal protein S13 OS=Mesoplasma florum (strain ATCC 33453 /
NBRC 100688 / NCTC 11704 / L1) GN=rpsM PE=3 SV=1
Length = 121
Score = 123 bits (309), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 59/120 (49%), Positives = 86/120 (71%), Gaps = 1/120 (0%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVS 106
AR+ GVEIPN KR+ SL YI+G+G + ++++L L + + T+D++EE++ I E+S
Sbjct: 2 ARISGVEIPNEKRVVISLTYIYGIGLSTSQKVLSKLNISEDVRTRDLTEEQIKAISTEIS 61
Query: 107 KYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 166
+ +EG+LRR +L I+RL EI CYRG+RH +GLP RGQ +K N RT+KG R +A KKK
Sbjct: 62 NFKVEGELRREVSLNIKRLMEIGCYRGLRHRKGLPVRGQSSKTNARTVKGPRKTVANKKK 121
>sp|B7GNB6|RS13_BIFLS 30S ribosomal protein S13 OS=Bifidobacterium longum subsp. infantis
(strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 /
S12) GN=rpsM PE=3 SV=1
Length = 125
Score = 123 bits (309), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 67/124 (54%), Positives = 86/124 (69%), Gaps = 2/124 (1%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEV- 105
AR+ GV+IPN KRIE +L YI GVGRTRA++ L + I KD+++E+LIT+RD +
Sbjct: 2 ARLAGVDIPNEKRIEIALTYIFGVGRTRAKETLAATGISPDIRVKDLTDEQLITLRDYLE 61
Query: 106 SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
+ Y IEGDLRR IRR +I CY+G RH +GLP RGQ TK N RT KG + +AGKK
Sbjct: 62 ANYKIEGDLRREIDADIRRKIQINCYQGQRHRKGLPVRGQRTKTNARTRKGPKRTVAGKK 121
Query: 166 KAPR 169
KA +
Sbjct: 122 KATK 125
>sp|B1YGX5|RS13_EXIS2 30S ribosomal protein S13 OS=Exiguobacterium sibiricum (strain DSM
17290 / JCM 13490 / 255-15) GN=rpsM PE=3 SV=1
Length = 121
Score = 123 bits (308), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 64/120 (53%), Positives = 88/120 (73%), Gaps = 1/120 (0%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVS 106
AR+ GV+IP KRI SL YI+GVG+T A+++L + + E+ T++++EE+L +RD +
Sbjct: 2 ARIAGVDIPREKRIVISLTYIYGVGKTTAQKVLKEAGISEDTRTRELTEEQLNQLRDGLD 61
Query: 107 KYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 166
K +EGDLRR +L I+RL EI CYRG+RH +GLP RGQ+TKNN RT KG R +A KKK
Sbjct: 62 KVKVEGDLRREISLNIKRLIEIGCYRGVRHRRGLPVRGQNTKNNSRTRKGPRRTVANKKK 121
>sp|A5FN18|RS13_FLAJ1 30S ribosomal protein S13 OS=Flavobacterium johnsoniae (strain ATCC
17061 / DSM 2064 / UW101) GN=rpsM PE=3 SV=1
Length = 124
Score = 123 bits (308), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 65/123 (52%), Positives = 87/123 (70%), Gaps = 1/123 (0%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVS 106
AR+ GV+IP NKR +L YI G+G++RA +IL ++ ++K +D +++E+ IRD VS
Sbjct: 2 ARIAGVDIPKNKRGVIALTYIFGLGKSRAIEILEKAQVSQDKKVQDWNDDEIGAIRDAVS 61
Query: 107 KYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 166
Y IEG+LR +L I+RL +I CYRGIRH GLP RGQ TKNN RT KGKR +A KKK
Sbjct: 62 FYKIEGELRSEVSLNIKRLMDIGCYRGIRHRSGLPLRGQRTKNNSRTRKGKRKTVANKKK 121
Query: 167 APR 169
A +
Sbjct: 122 ATK 124
>sp|B1VAC3|RS13_PHYAS 30S ribosomal protein S13 OS=Phytoplasma australiense GN=rpsM PE=3
SV=1
Length = 121
Score = 123 bits (308), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 59/121 (48%), Positives = 91/121 (75%), Gaps = 1/121 (0%)
Query: 47 CARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEV 105
AR+ G++IP++KR+ +L YI+G+G+ +++IL +L + + I K+++E++L ++R E+
Sbjct: 1 MARIAGIDIPSDKRVVIALTYIYGLGKKLSQKILNELNISHDIRVKNLTEQQLSSLRSEI 60
Query: 106 SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
+KY +EGDLRR L I+RL EI YRG+RH +GLP RGQ T+NN T+KGK +IAGKK
Sbjct: 61 TKYSVEGDLRREVTLNIKRLMEIGVYRGLRHRKGLPVRGQKTRNNAHTVKGKPKSIAGKK 120
Query: 166 K 166
K
Sbjct: 121 K 121
>sp|B5EM96|RS13_ACIF5 30S ribosomal protein S13 OS=Acidithiobacillus ferrooxidans (strain
ATCC 53993) GN=rpsM PE=3 SV=1
Length = 118
Score = 123 bits (308), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 62/111 (55%), Positives = 82/111 (73%), Gaps = 3/111 (2%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL--VDLKMENKITKDMSEEELITIRDEV 105
AR+ GV IPNNK+IE +L YI+G+GRTRAR +L D+ + ++ KD+SE EL IR EV
Sbjct: 2 ARIAGVNIPNNKQIEIALTYIYGIGRTRARTVLSAADIACDMRV-KDISEPELERIRSEV 60
Query: 106 SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKG 156
+K+++EGDLRR + I+RL ++ CYRGIRH +GLP GQ TK N RT KG
Sbjct: 61 AKFLVEGDLRREVTMNIKRLMDLGCYRGIRHRRGLPVHGQRTKTNARTRKG 111
>sp|B7J4A1|RS13_ACIF2 30S ribosomal protein S13 OS=Acidithiobacillus ferrooxidans (strain
ATCC 23270 / DSM 14882 / NCIB 8455) GN=rpsM PE=3 SV=1
Length = 118
Score = 123 bits (308), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 62/111 (55%), Positives = 82/111 (73%), Gaps = 3/111 (2%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL--VDLKMENKITKDMSEEELITIRDEV 105
AR+ GV IPNNK+IE +L YI+G+GRTRAR +L D+ + ++ KD+SE EL IR EV
Sbjct: 2 ARIAGVNIPNNKQIEIALTYIYGIGRTRARTVLSAADIACDMRV-KDISEPELERIRSEV 60
Query: 106 SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKG 156
+K+++EGDLRR + I+RL ++ CYRGIRH +GLP GQ TK N RT KG
Sbjct: 61 AKFLVEGDLRREVTMNIKRLMDLGCYRGIRHRRGLPVHGQRTKTNARTRKG 111
>sp|Q2SRH7|RS13_MYCCT 30S ribosomal protein S13 OS=Mycoplasma capricolum subsp.
capricolum (strain California kid / ATCC 27343 / NCTC
10154) GN=rpsM PE=3 SV=1
Length = 121
Score = 123 bits (308), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 63/121 (52%), Positives = 83/121 (68%), Gaps = 1/121 (0%)
Query: 47 CARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEV 105
AR+ GVEIPNNKR+ SL YI+G+G A+ +L L + I KD++EE++ I E+
Sbjct: 1 MARISGVEIPNNKRVVVSLTYIYGIGLPTAQSVLKTLNISEDIRVKDLTEEQIKNISIEI 60
Query: 106 SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
SKY EG+LRR +L I+RL EI YRG+RH +GLP RGQ +K N RT+KG R +A KK
Sbjct: 61 SKYKTEGELRREVSLNIKRLMEIGSYRGLRHRKGLPVRGQSSKTNARTVKGPRKTVANKK 120
Query: 166 K 166
K
Sbjct: 121 K 121
>sp|B2GDU5|RS13_LACF3 30S ribosomal protein S13 OS=Lactobacillus fermentum (strain NBRC
3956 / LMG 18251) GN=rpsM PE=3 SV=1
Length = 121
Score = 122 bits (307), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 64/121 (52%), Positives = 84/121 (69%), Gaps = 1/121 (0%)
Query: 47 CARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEV 105
AR+ GV++P +KRI L YI G+G T A++IL + + I +D++ ++ IR EV
Sbjct: 1 MARIAGVDLPRDKRIVIGLTYIFGIGNTTAQKILANAGVSEDIRVRDLTPDQEEKIRAEV 60
Query: 106 SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
+ +EGDLRR +L I+RL+EI YRG+RH GLP RGQHTKNN RT KGK VAIAGKK
Sbjct: 61 DQIKVEGDLRREVSLNIKRLQEIGSYRGMRHRHGLPVRGQHTKNNARTRKGKAVAIAGKK 120
Query: 166 K 166
K
Sbjct: 121 K 121
>sp|B7GJ92|RS13_ANOFW 30S ribosomal protein S13 OS=Anoxybacillus flavithermus (strain DSM
21510 / WK1) GN=rpsM PE=3 SV=1
Length = 121
Score = 122 bits (307), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 63/120 (52%), Positives = 87/120 (72%), Gaps = 1/120 (0%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVS 106
AR+ GV+IP +KR+ SL YI+G+G+ A++IL + + E+ +D++EEEL IR+ V
Sbjct: 2 ARIAGVDIPRDKRVVISLTYIYGIGKATAQKILAEAGVSEDTRVRDLTEEELGKIREIVD 61
Query: 107 KYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 166
+ +EGDLRR +L I+RL EI CYRG+RH +GLP RGQ+TKNN RT KG R +A KKK
Sbjct: 62 RLKVEGDLRREVSLNIKRLMEIGCYRGLRHRRGLPVRGQNTKNNARTRKGPRRTVANKKK 121
>sp|Q03PY1|RS13_LACBA 30S ribosomal protein S13 OS=Lactobacillus brevis (strain ATCC 367
/ JCM 1170) GN=rpsM PE=3 SV=1
Length = 121
Score = 122 bits (307), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 62/119 (52%), Positives = 84/119 (70%), Gaps = 1/119 (0%)
Query: 49 RVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSK 107
R+ GV++P +KRI Y L YI G+G A +I+ D + E+ +D++ ++ +R EV K
Sbjct: 3 RIAGVDLPRDKRIAYGLTYIFGIGINTAHKIVADAGVPEDVRVRDLTPDQEDKVRAEVDK 62
Query: 108 YMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 166
Y +EGDLRR +L I+ L+EI YRG+RH +GLP RGQHTKNN RT KGK V+IAGKKK
Sbjct: 63 YKVEGDLRREVSLNIKNLQEIGSYRGMRHRRGLPVRGQHTKNNARTRKGKAVSIAGKKK 121
>sp|Q6AD19|RS13_LEIXX 30S ribosomal protein S13 OS=Leifsonia xyli subsp. xyli (strain
CTCB07) GN=rpsM PE=3 SV=1
Length = 124
Score = 122 bits (307), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 64/123 (52%), Positives = 86/123 (69%), Gaps = 2/123 (1%)
Query: 47 CARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEV 105
AR+ GV+IP KR+E +L YI+GVGRTRA Q L + ++ +I KD+++E+L+++RD +
Sbjct: 1 MARLAGVDIPREKRVEVALTYIYGVGRTRALQTLRETEISGEIRVKDLTDEQLVSLRDYI 60
Query: 106 S-KYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGK 164
+ +EGDLRR A IRR EI Y GIRH +GLP RGQ TK N RT KG + +AGK
Sbjct: 61 EGNFKVEGDLRREVAADIRRKVEIGSYEGIRHRKGLPVRGQRTKTNARTRKGPKRTVAGK 120
Query: 165 KKA 167
KKA
Sbjct: 121 KKA 123
>sp|A1A093|RS13_BIFAA 30S ribosomal protein S13 OS=Bifidobacterium adolescentis (strain
ATCC 15703 / DSM 20083 / NCTC 11814 / E194a) GN=rpsM
PE=3 SV=2
Length = 125
Score = 122 bits (307), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 67/124 (54%), Positives = 85/124 (68%), Gaps = 2/124 (1%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVS 106
AR+ GV+IPN KRIE +L YI GVGRTRA++ L + I KD+++E+LIT+RD +
Sbjct: 2 ARLAGVDIPNEKRIEIALTYIFGVGRTRAKETLAATGINPDIRVKDLTDEQLITLRDYLE 61
Query: 107 -KYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
Y IEGDLRR IRR +I CY+G RH +GLP RGQ TK N RT KG + +AGKK
Sbjct: 62 GNYKIEGDLRREIDADIRRKIQINCYQGQRHRKGLPVRGQRTKTNARTRKGPKRTVAGKK 121
Query: 166 KAPR 169
KA +
Sbjct: 122 KATK 125
>sp|A6GZ76|RS13_FLAPJ 30S ribosomal protein S13 OS=Flavobacterium psychrophilum (strain
JIP02/86 / ATCC 49511) GN=rpsM PE=3 SV=1
Length = 124
Score = 122 bits (306), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/123 (52%), Positives = 87/123 (70%), Gaps = 1/123 (0%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVS 106
AR+ GV+IP NKR +L YI GVGR+RA ++L ++ ++K +D +++E+ IR+ VS
Sbjct: 2 ARIAGVDIPKNKRGVIALTYIFGVGRSRAIEVLEKAQVSQDKKVQDWNDDEIGGIREAVS 61
Query: 107 KYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 166
Y IEG+LR +L I+RL +I CYRGIRH GLP RGQ TKNN RT KGKR +A KKK
Sbjct: 62 FYKIEGELRSEVSLNIKRLMDIGCYRGIRHRSGLPLRGQRTKNNSRTRKGKRKTVANKKK 121
Query: 167 APR 169
A +
Sbjct: 122 ATK 124
>sp|Q6YQZ7|RS13_ONYPE 30S ribosomal protein S13 OS=Onion yellows phytoplasma (strain
OY-M) GN=rpsM PE=3 SV=1
Length = 121
Score = 122 bits (306), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 60/121 (49%), Positives = 88/121 (72%), Gaps = 1/121 (0%)
Query: 47 CARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEV 105
AR+ G++IP++KR+ +L YI+G+G + +IL +L ++ I K+++E++L +R E+
Sbjct: 1 MARIAGIDIPSDKRVVIALTYIYGLGNKLSHKILNELNIDQNIRVKNLTEQQLSALRSEI 60
Query: 106 SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
+KY +EGDLRR L I+RL EI YRG+RH +GLP RGQ T+NN T+KGK AIAGKK
Sbjct: 61 TKYNVEGDLRREVTLNIKRLMEIGAYRGLRHRKGLPVRGQKTRNNAHTVKGKPKAIAGKK 120
Query: 166 K 166
K
Sbjct: 121 K 121
>sp|C0ME29|RS13_STRS7 30S ribosomal protein S13 OS=Streptococcus equi subsp.
zooepidemicus (strain H70) GN=rpsM PE=3 SV=1
Length = 121
Score = 122 bits (306), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/121 (52%), Positives = 83/121 (68%), Gaps = 1/121 (0%)
Query: 47 CARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEV 105
AR+ GV+IPN+KR+ SL Y++G+G +++IL + I KD++ ++ IR EV
Sbjct: 1 MARIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGVSEDIRVKDLTSDQEDAIRREV 60
Query: 106 SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
+EGDLRR L I+RL EI YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKK
Sbjct: 61 DTIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKK 120
Query: 166 K 166
K
Sbjct: 121 K 121
>sp|B4U524|RS13_STREM 30S ribosomal protein S13 OS=Streptococcus equi subsp.
zooepidemicus (strain MGCS10565) GN=rpsM PE=3 SV=1
Length = 121
Score = 122 bits (306), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/121 (52%), Positives = 83/121 (68%), Gaps = 1/121 (0%)
Query: 47 CARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEV 105
AR+ GV+IPN+KR+ SL Y++G+G +++IL + I KD++ ++ IR EV
Sbjct: 1 MARIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGVSEDIRVKDLTSDQEDAIRREV 60
Query: 106 SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
+EGDLRR L I+RL EI YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKK
Sbjct: 61 DTIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKK 120
Query: 166 K 166
K
Sbjct: 121 K 121
>sp|C0M7C5|RS13_STRE4 30S ribosomal protein S13 OS=Streptococcus equi subsp. equi (strain
4047) GN=rpsM PE=3 SV=1
Length = 121
Score = 122 bits (306), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/121 (52%), Positives = 83/121 (68%), Gaps = 1/121 (0%)
Query: 47 CARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEV 105
AR+ GV+IPN+KR+ SL Y++G+G +++IL + I KD++ ++ IR EV
Sbjct: 1 MARIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGVSEDIRVKDLTSDQEDAIRREV 60
Query: 106 SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
+EGDLRR L I+RL EI YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKK
Sbjct: 61 DTIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKK 120
Query: 166 K 166
K
Sbjct: 121 K 121
>sp|Q7NQH4|RS13_CHRVO 30S ribosomal protein S13 OS=Chromobacterium violaceum (strain ATCC
12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 /
NCTC 9757) GN=rpsM PE=3 SV=1
Length = 120
Score = 122 bits (305), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/119 (51%), Positives = 82/119 (68%), Gaps = 1/119 (0%)
Query: 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVS 106
AR+ GV IPN+ LQ I GVG+TRA+QI + + KD++E E+ +RD+V+
Sbjct: 2 ARIAGVNIPNHAHAVIGLQAIFGVGQTRAQQICAAASVNPSTKVKDLTEAEMEALRDQVA 61
Query: 107 KYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
K+ +EGDLRR ++I+RL ++ CYRG RH +GLPCRGQ T+ N RT KG R AIAGKK
Sbjct: 62 KFTVEGDLRREITMSIKRLMDMGCYRGFRHRRGLPCRGQRTRTNARTRKGPRKAIAGKK 120
>sp|Q8ETW0|RS13_OCEIH 30S ribosomal protein S13 OS=Oceanobacillus iheyensis (strain DSM
14371 / JCM 11309 / KCTC 3954 / HTE831) GN=rpsM PE=3
SV=1
Length = 121
Score = 122 bits (305), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/121 (53%), Positives = 85/121 (70%), Gaps = 1/121 (0%)
Query: 47 CARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEV 105
AR+ G++IP +KR+ SL YI+GVG+T A+QIL + + E+ +D++E+EL IR V
Sbjct: 1 MARIAGIDIPRDKRVVISLTYIYGVGKTTAQQILKEAGVSEDTRVRDLTEDELGRIRQAV 60
Query: 106 SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
+Y EGDLRR +L I+RL EI YRGIRH +GLP RGQ TKNN RT KG R +A KK
Sbjct: 61 DQYNTEGDLRREVSLNIKRLIEIGSYRGIRHRRGLPVRGQKTKNNSRTRKGPRKTMANKK 120
Query: 166 K 166
K
Sbjct: 121 K 121
>sp|P66391|RS13_STRA5 30S ribosomal protein S13 OS=Streptococcus agalactiae serotype V
(strain ATCC BAA-611 / 2603 V/R) GN=rpsM PE=3 SV=1
Length = 121
Score = 122 bits (305), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/121 (52%), Positives = 84/121 (69%), Gaps = 1/121 (0%)
Query: 47 CARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEV 105
AR+ GV+IPN+KR+ SL Y++G+G + +++IL + I KD++ ++ IR EV
Sbjct: 1 MARIAGVDIPNDKRVVISLTYVYGIGLSTSKKILAAAGISEDIRVKDLTPDQEDAIRREV 60
Query: 106 SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
+EGDLRR L I+RL EI YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKK
Sbjct: 61 DAIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKK 120
Query: 166 K 166
K
Sbjct: 121 K 121
>sp|P66390|RS13_STRA3 30S ribosomal protein S13 OS=Streptococcus agalactiae serotype III
(strain NEM316) GN=rpsM PE=3 SV=1
Length = 121
Score = 122 bits (305), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/121 (52%), Positives = 84/121 (69%), Gaps = 1/121 (0%)
Query: 47 CARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEV 105
AR+ GV+IPN+KR+ SL Y++G+G + +++IL + I KD++ ++ IR EV
Sbjct: 1 MARIAGVDIPNDKRVVISLTYVYGIGLSTSKKILAAAGISEDIRVKDLTPDQEDAIRREV 60
Query: 106 SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
+EGDLRR L I+RL EI YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKK
Sbjct: 61 DAIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKK 120
Query: 166 K 166
K
Sbjct: 121 K 121
>sp|Q3K3U6|RS13_STRA1 30S ribosomal protein S13 OS=Streptococcus agalactiae serotype Ia
(strain ATCC 27591 / A909 / CDC SS700) GN=rpsM PE=3 SV=1
Length = 121
Score = 122 bits (305), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/121 (52%), Positives = 84/121 (69%), Gaps = 1/121 (0%)
Query: 47 CARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEV 105
AR+ GV+IPN+KR+ SL Y++G+G + +++IL + I KD++ ++ IR EV
Sbjct: 1 MARIAGVDIPNDKRVVISLTYVYGIGLSTSKKILAAAGISEDIRVKDLTPDQEDAIRREV 60
Query: 106 SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
+EGDLRR L I+RL EI YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKK
Sbjct: 61 DAIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKK 120
Query: 166 K 166
K
Sbjct: 121 K 121
>sp|Q6MSP7|RS13_MYCMS 30S ribosomal protein S13 OS=Mycoplasma mycoides subsp. mycoides SC
(strain PG1) GN=rpsM PE=3 SV=1
Length = 121
Score = 122 bits (305), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/121 (52%), Positives = 82/121 (67%), Gaps = 1/121 (0%)
Query: 47 CARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEV 105
AR+ GVEIPNNKR+ SL YI+G+G A+ +L L + I KD++EE++ I E+
Sbjct: 1 MARISGVEIPNNKRVVVSLTYIYGIGLPTAQSVLKTLNISEDIRVKDLTEEQIKNISMEI 60
Query: 106 SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
SKY EG LRR +L I+RL EI YRG+RH +GLP RGQ +K N RT+KG R +A KK
Sbjct: 61 SKYKTEGKLRREVSLNIKRLMEIGSYRGLRHRKGLPVRGQSSKTNARTVKGPRKTVANKK 120
Query: 166 K 166
K
Sbjct: 121 K 121
>sp|Q03IH5|RS13_STRTD 30S ribosomal protein S13 OS=Streptococcus thermophilus (strain
ATCC BAA-491 / LMD-9) GN=rpsM PE=3 SV=1
Length = 121
Score = 122 bits (305), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/121 (52%), Positives = 83/121 (68%), Gaps = 1/121 (0%)
Query: 47 CARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEV 105
AR+ GV+IPN+KR+ SL Y++G+G +++IL + I KD++ ++ IR EV
Sbjct: 1 MARIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGVSEDIRVKDLTNDQEDAIRREV 60
Query: 106 SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
+EGDLRR L I+RL EI YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKK
Sbjct: 61 DAIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKK 120
Query: 166 K 166
K
Sbjct: 121 K 121
>sp|Q5M2D7|RS13_STRT2 30S ribosomal protein S13 OS=Streptococcus thermophilus (strain
ATCC BAA-250 / LMG 18311) GN=rpsM PE=3 SV=1
Length = 121
Score = 122 bits (305), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/121 (52%), Positives = 83/121 (68%), Gaps = 1/121 (0%)
Query: 47 CARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEV 105
AR+ GV+IPN+KR+ SL Y++G+G +++IL + I KD++ ++ IR EV
Sbjct: 1 MARIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGVSEDIRVKDLTNDQEDAIRREV 60
Query: 106 SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
+EGDLRR L I+RL EI YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKK
Sbjct: 61 DAIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKK 120
Query: 166 K 166
K
Sbjct: 121 K 121
>sp|Q5LXT5|RS13_STRT1 30S ribosomal protein S13 OS=Streptococcus thermophilus (strain
CNRZ 1066) GN=rpsM PE=3 SV=1
Length = 121
Score = 122 bits (305), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/121 (52%), Positives = 83/121 (68%), Gaps = 1/121 (0%)
Query: 47 CARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEV 105
AR+ GV+IPN+KR+ SL Y++G+G +++IL + I KD++ ++ IR EV
Sbjct: 1 MARIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGVSEDIRVKDLTNDQEDAIRREV 60
Query: 106 SKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165
+EGDLRR L I+RL EI YRGIRH +GLP RGQ+TKNN RT KGK VAIAGKK
Sbjct: 61 DAIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKK 120
Query: 166 K 166
K
Sbjct: 121 K 121
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,415,268
Number of Sequences: 539616
Number of extensions: 2361012
Number of successful extensions: 7988
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 6267
Number of HSP's gapped (non-prelim): 884
length of query: 169
length of database: 191,569,459
effective HSP length: 109
effective length of query: 60
effective length of database: 132,751,315
effective search space: 7965078900
effective search space used: 7965078900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)