Query 030930
Match_columns 169
No_of_seqs 126 out of 925
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 10:23:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030930.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030930hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xzm_M RPS18E; ribosome, trans 100.0 3.6E-52 1.2E-56 331.2 7.8 131 30-166 1-155 (155)
2 3bbn_M Ribosomal protein S13; 100.0 4.7E-54 1.6E-58 338.4 -5.6 139 3-156 5-145 (145)
3 2vqe_M 30S ribosomal protein S 100.0 5.2E-52 1.8E-56 320.6 3.3 123 47-169 1-125 (126)
4 3iz6_M 40S ribosomal protein S 100.0 4.5E-51 1.5E-55 324.0 5.4 128 30-165 1-152 (152)
5 3j20_O 30S ribosomal protein S 100.0 1.1E-50 3.7E-55 320.6 5.9 123 38-166 2-148 (148)
6 3u5c_S 40S ribosomal protein S 100.0 1.2E-48 4.1E-53 308.3 8.2 120 30-153 1-144 (146)
7 3r8n_M 30S ribosomal protein S 100.0 5.7E-49 1.9E-53 299.1 4.9 112 48-159 1-113 (114)
8 2a1j_A DNA repair endonuclease 92.1 0.086 3E-06 34.9 2.5 37 64-101 5-41 (63)
9 3w0f_A Endonuclease 8-like 3; 90.4 0.29 9.9E-06 41.8 4.7 51 58-108 174-228 (287)
10 1k3x_A Endonuclease VIII; hydr 90.4 0.3 1E-05 40.6 4.7 49 59-107 151-203 (262)
11 3u6p_A Formamidopyrimidine-DNA 90.2 0.32 1.1E-05 40.7 4.7 51 57-107 154-208 (273)
12 1ee8_A MUTM (FPG) protein; bet 89.3 0.44 1.5E-05 39.8 4.9 51 57-107 142-196 (266)
13 2xzf_A Formamidopyrimidine-DNA 89.2 0.45 1.5E-05 39.7 4.9 50 58-107 153-206 (271)
14 1k82_A Formamidopyrimidine-DNA 89.1 0.44 1.5E-05 39.7 4.8 50 58-107 150-203 (268)
15 3vk8_A Probable formamidopyrim 88.9 0.44 1.5E-05 40.4 4.7 51 57-107 153-208 (295)
16 3twl_A Formamidopyrimidine-DNA 88.6 0.52 1.8E-05 40.3 4.9 50 58-107 168-221 (310)
17 1kft_A UVRC, excinuclease ABC 88.0 0.12 4.2E-06 34.8 0.6 33 52-84 13-45 (78)
18 3arc_U Photosystem II 12 kDa e 87.0 0.84 2.9E-05 32.9 4.5 50 62-111 25-78 (97)
19 2a1j_B DNA excision repair pro 86.0 0.23 7.7E-06 34.5 1.0 25 60-84 29-53 (91)
20 1z00_B DNA repair endonuclease 85.4 0.35 1.2E-05 34.0 1.8 40 61-101 16-55 (84)
21 1mu5_A Type II DNA topoisomera 84.4 1.2 4.2E-05 39.8 5.3 44 66-109 261-305 (471)
22 1s5l_U Photosystem II 12 kDa e 82.4 1.7 5.7E-05 33.4 4.5 53 58-110 58-114 (134)
23 2duy_A Competence protein come 79.1 1.5 5E-05 29.1 2.9 44 61-104 25-72 (75)
24 1z00_A DNA excision repair pro 78.8 0.89 3E-05 31.2 1.8 24 61-84 17-40 (89)
25 1x2i_A HEF helicase/nuclease; 76.5 1.1 3.8E-05 29.1 1.7 25 60-84 11-35 (75)
26 3fut_A Dimethyladenosine trans 74.2 1.5 5.2E-05 36.2 2.3 49 57-106 219-268 (271)
27 2eo2_A Adult MALE hypothalamus 72.1 2.9 9.8E-05 28.9 2.9 24 80-103 37-60 (71)
28 2nrt_A Uvrabc system protein C 71.6 2.1 7.2E-05 35.1 2.5 39 62-101 167-205 (220)
29 3n0u_A Probable N-glycosylase/ 66.9 6.8 0.00023 31.7 4.6 25 61-85 127-152 (219)
30 3fhg_A Mjogg, N-glycosylase/DN 63.7 3.4 0.00012 32.7 2.2 26 60-85 114-139 (207)
31 1qyr_A KSGA, high level kasuga 63.5 3.5 0.00012 33.5 2.2 43 58-106 206-249 (252)
32 3vdp_A Recombination protein R 61.5 8.5 0.00029 31.5 4.2 72 61-139 24-122 (212)
33 1ixr_A Holliday junction DNA h 60.1 1 3.4E-05 36.0 -1.6 39 48-86 57-95 (191)
34 2gqf_A Hypothetical protein HI 57.4 4.9 0.00017 34.3 2.2 49 58-108 280-328 (401)
35 2ztd_A Holliday junction ATP-d 56.4 4.8 0.00016 32.6 1.9 39 48-86 73-111 (212)
36 2edu_A Kinesin-like protein KI 56.0 12 0.00042 25.9 3.8 22 62-83 39-60 (98)
37 2ihm_A POL MU, DNA polymerase 55.6 9.1 0.00031 33.0 3.6 40 62-102 101-145 (360)
38 3fhf_A Mjogg, N-glycosylase/DN 55.0 5.5 0.00019 32.1 2.0 27 60-86 121-148 (214)
39 1pu6_A 3-methyladenine DNA gly 55.0 5 0.00017 32.0 1.8 23 61-83 119-141 (218)
40 1cuk_A RUVA protein; DNA repai 55.0 5 0.00017 32.1 1.7 44 43-86 53-96 (203)
41 2ztd_A Holliday junction ATP-d 54.7 4.4 0.00015 32.9 1.4 22 63-84 123-144 (212)
42 1tdh_A NEI endonuclease VIII-l 54.3 1.9 6.6E-05 37.8 -0.9 39 58-96 158-200 (364)
43 2bgw_A XPF endonuclease; hydro 54.2 6.1 0.00021 31.1 2.1 25 61-85 160-184 (219)
44 3c65_A Uvrabc system protein C 52.8 2.9 9.9E-05 34.4 0.0 45 56-101 166-210 (226)
45 2abk_A Endonuclease III; DNA-r 51.3 5.1 0.00017 31.6 1.2 23 61-83 107-129 (211)
46 1vq8_Y 50S ribosomal protein L 50.6 3.3 0.00011 34.2 0.0 22 64-85 49-70 (241)
47 1kea_A Possible G-T mismatches 50.1 6.7 0.00023 31.3 1.8 23 61-83 113-135 (221)
48 1kg2_A A/G-specific adenine gl 49.9 6.5 0.00022 31.4 1.7 23 61-83 107-129 (225)
49 1orn_A Endonuclease III; DNA r 49.3 7.1 0.00024 31.3 1.8 22 61-82 111-132 (226)
50 3ftd_A Dimethyladenosine trans 49.2 7.5 0.00026 31.3 1.9 29 79-107 217-246 (249)
51 2h56_A DNA-3-methyladenine gly 47.7 7.6 0.00026 31.3 1.8 24 60-83 135-158 (233)
52 1ixr_A Holliday junction DNA h 47.5 7.1 0.00024 31.0 1.5 21 64-84 108-128 (191)
53 4e9f_A Methyl-CPG-binding doma 47.5 8.3 0.00029 29.7 1.9 21 63-83 104-124 (161)
54 1vdd_A Recombination protein R 46.3 15 0.00051 30.4 3.3 73 60-139 9-108 (228)
55 4b21_A Probable DNA-3-methylad 45.8 7.8 0.00027 31.4 1.5 24 60-83 147-170 (232)
56 3uzu_A Ribosomal RNA small sub 45.6 2.8 9.6E-05 34.6 -1.2 43 58-106 230-273 (279)
57 1cuk_A RUVA protein; DNA repai 45.6 8.3 0.00028 30.8 1.7 20 64-83 109-128 (203)
58 3s6i_A DNA-3-methyladenine gly 44.9 8.2 0.00028 31.1 1.5 23 61-83 137-159 (228)
59 2yg9_A DNA-3-methyladenine gly 44.5 7.9 0.00027 31.1 1.4 25 59-83 142-166 (225)
60 2zbk_B Type 2 DNA topoisomeras 44.4 32 0.0011 31.2 5.5 44 66-109 260-304 (530)
61 1mpg_A ALKA, 3-methyladenine D 44.1 8.4 0.00029 31.7 1.5 23 61-83 205-227 (282)
62 2fmp_A DNA polymerase beta; nu 43.9 9.5 0.00033 32.5 1.9 40 62-102 97-141 (335)
63 2zet_C Melanophilin; complex, 41.9 41 0.0014 25.7 5.0 18 90-107 14-31 (153)
64 2jhn_A ALKA, 3-methyladenine D 41.5 9.6 0.00033 31.7 1.5 25 60-84 207-232 (295)
65 3i0w_A 8-oxoguanine-DNA-glycos 41.5 8.8 0.0003 32.0 1.2 43 60-105 208-251 (290)
66 3b0x_A DNA polymerase beta fam 40.2 10 0.00035 34.4 1.5 27 60-86 90-116 (575)
67 1zq9_A Probable dimethyladenos 39.9 36 0.0012 27.5 4.7 33 76-108 248-280 (285)
68 2w9m_A Polymerase X; SAXS, DNA 39.7 9.2 0.00031 34.8 1.2 25 61-86 95-119 (578)
69 3bqs_A Uncharacterized protein 38.9 98 0.0034 21.6 7.8 22 64-86 5-26 (93)
70 3tqs_A Ribosomal RNA small sub 38.5 5.1 0.00018 32.5 -0.7 42 58-105 212-254 (255)
71 3fsp_A A/G-specific adenine gl 38.2 11 0.00038 32.0 1.4 23 61-83 116-138 (369)
72 2xhi_A N-glycosylase/DNA lyase 36.5 13 0.00044 32.1 1.5 24 60-83 250-273 (360)
73 4ecq_A DNA polymerase ETA; tra 35.8 26 0.0009 30.5 3.4 38 64-101 254-292 (435)
74 1jms_A Terminal deoxynucleotid 35.6 14 0.00048 32.1 1.6 39 62-101 120-164 (381)
75 2bcq_A DNA polymerase lambda; 35.3 14 0.00049 31.4 1.6 27 60-87 93-119 (335)
76 3b0x_A DNA polymerase beta fam 31.9 15 0.00053 33.2 1.3 43 65-107 130-172 (575)
77 2w9m_A Polymerase X; SAXS, DNA 31.8 17 0.00059 32.9 1.6 39 67-105 135-173 (578)
78 1qam_A ERMC' methyltransferase 31.3 22 0.00076 28.0 2.1 31 78-108 211-242 (244)
79 3v76_A Flavoprotein; structura 31.2 51 0.0017 28.2 4.5 50 58-109 299-348 (417)
80 3n5n_X A/G-specific adenine DN 29.8 18 0.0006 30.5 1.2 22 62-83 127-149 (287)
81 2i5h_A Hypothetical protein AF 29.5 25 0.00086 28.6 2.1 20 63-82 132-151 (205)
82 3gru_A Dimethyladenosine trans 28.6 13 0.00045 30.9 0.3 51 57-107 226-287 (295)
83 4gfj_A Topoisomerase V; helix- 28.2 23 0.00079 32.6 1.8 40 62-101 467-515 (685)
84 2h1r_A Dimethyladenosine trans 26.5 82 0.0028 25.5 4.8 33 76-108 260-292 (299)
85 1exn_A 5'-exonuclease, 5'-nucl 25.8 34 0.0012 28.8 2.3 18 67-84 207-224 (290)
86 2d0s_A Cytochrome C, cytochrom 24.6 47 0.0016 20.8 2.4 17 91-107 61-77 (79)
87 1kx2_A Mono-heme C-type cytoch 24.5 47 0.0016 21.3 2.4 17 91-107 63-79 (81)
88 1gks_A Cytochrome C551; haloph 24.5 51 0.0017 20.9 2.6 18 90-107 59-76 (78)
89 1zbd_B Rabphilin-3A; G protein 24.4 77 0.0026 23.6 3.9 18 90-107 7-24 (134)
90 2kp7_A Crossover junction endo 24.3 33 0.0011 23.8 1.7 20 65-84 60-79 (87)
91 3ph2_B Cytochrome C6; photosyn 24.2 49 0.0017 20.7 2.4 18 90-107 63-80 (86)
92 1cc5_A Cytochrome C5; electron 24.2 48 0.0017 21.6 2.4 15 92-106 67-81 (83)
93 2i0x_A Hypothetical protein PF 24.1 36 0.0012 23.3 1.8 36 73-108 14-52 (85)
94 3q8k_A Flap endonuclease 1; he 23.7 37 0.0013 28.9 2.2 18 67-84 236-253 (341)
95 1jx4_A DNA polymerase IV (fami 23.3 70 0.0024 26.6 3.8 36 65-101 180-216 (352)
96 2zxy_A Cytochrome C552, cytoch 22.8 47 0.0016 20.8 2.1 18 90-107 68-85 (87)
97 3bc1_B Synaptotagmin-like prot 22.5 65 0.0022 21.2 2.7 33 91-126 1-33 (59)
98 3dr0_A Cytochrome C6; photosyn 22.3 51 0.0017 20.8 2.2 18 90-107 69-86 (93)
99 1ayg_A Cytochrome C-552; elect 22.3 56 0.0019 20.6 2.4 16 92-107 63-78 (80)
100 2ihm_A POL MU, DNA polymerase 22.2 22 0.00074 30.6 0.4 21 64-84 62-82 (360)
101 1im4_A DBH; DNA polymerase PAL 22.2 53 0.0018 25.9 2.7 23 64-87 185-207 (221)
102 2bcq_A DNA polymerase lambda; 22.0 29 0.00099 29.5 1.2 31 64-94 58-89 (335)
103 1c75_A Cytochrome C-553; heme, 22.0 59 0.002 20.0 2.5 17 91-107 53-69 (71)
104 2exv_A Cytochrome C-551; alpha 22.0 63 0.0022 20.2 2.6 16 92-107 65-80 (82)
105 1rxw_A Flap structure-specific 21.8 44 0.0015 28.0 2.2 18 67-84 239-256 (336)
106 3dmi_A Cytochrome C6; electron 21.7 59 0.002 20.5 2.4 18 90-107 64-81 (88)
107 4dez_A POL IV 1, DNA polymeras 21.7 58 0.002 27.2 3.0 37 64-101 179-216 (356)
108 1a56_A C-551, ferricytochrome 21.7 46 0.0016 21.0 1.9 17 91-107 63-79 (81)
109 1ls9_A Cytochrome C6; omega lo 21.6 59 0.002 20.8 2.4 18 90-107 67-84 (91)
110 1c53_A Cytochrome C553; electr 21.5 50 0.0017 20.8 2.1 17 91-107 62-78 (79)
111 1c6r_A Cytochrome C6; electron 21.5 59 0.002 20.6 2.4 18 90-107 65-82 (89)
112 1cyi_A Cytochrome C6, cytochro 20.9 62 0.0021 20.6 2.4 18 90-107 64-81 (90)
113 1nd9_A Translation initiation 20.7 50 0.0017 19.2 1.8 40 65-105 8-48 (49)
114 1f1f_A Cytochrome C6; heme, pr 20.6 64 0.0022 20.4 2.4 18 90-107 66-83 (89)
115 1gdv_A Cytochrome C6; RED ALGA 20.5 65 0.0022 20.1 2.4 18 90-107 62-79 (85)
116 1cno_A Cytochrome C552; electr 20.3 66 0.0023 20.6 2.5 17 91-107 65-81 (87)
117 3f2b_A DNA-directed DNA polyme 20.2 74 0.0025 31.5 3.7 59 59-134 963-1021(1041)
118 2owo_A DNA ligase; protein-DNA 20.1 79 0.0027 29.7 3.8 36 66-101 449-485 (671)
No 1
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=100.00 E-value=3.6e-52 Score=331.21 Aligned_cols=131 Identities=31% Similarity=0.431 Sum_probs=122.1
Q ss_pred cccccCCCCCCCCcccceeEEeCccCCCCeEEeEeeccccccCHHHHHHHHHHcCCC-ccccCCCCHHHHHHHHHHHhh-
Q 030930 30 LSFPVSKQPQYPGLSIQCARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVSK- 107 (169)
Q Consensus 30 ~~~~~~~~~~f~~i~~~~vrI~~tni~~~K~i~~ALt~I~GIG~~~A~~Ic~~lgi~-~k~~~~Ls~~el~~L~~~l~~- 107 (169)
||+..++.++|||| +||+|||||++|+|.+|||+|||||+++|+.||+++||| ++++++|||+|+++|.++|++
T Consensus 1 m~~~~~~~~~f~~m----~RI~g~~l~~~k~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~~l~~~i~~p 76 (155)
T 2xzm_M 1 MSFVIEKESDFKYI----HRILNTNIDGKRITPIALTGIRGIGRRFAYIICKVLKIDPNARAGLLTEDQCNKITDLIADP 76 (155)
T ss_dssp CCCCSSTTTSSCSC----CEETTTEECCSSCHHHHHTTSTTCCHHHHHHHHHHTTCCSSSCSSCSCHHHHHHHHHHHHSH
T ss_pred CCccccchHhhhhh----HheeCccCCCCCEEEEeeecccccCHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHhCc
Confidence 34444344489999 999999999999999999999999999999999999999 778999999999999999986
Q ss_pred ----------------------cccchHHHHHHHHHHHHHHhhhhcccCccCCCCccCCccCccccccCCCceeeecccc
Q 030930 108 ----------------------YMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165 (169)
Q Consensus 108 ----------------------~~Ie~dLr~~~~~nI~rL~~I~sYRG~RH~~GLPVRGQRTrTNarT~Kg~~~gV~~kK 165 (169)
|.+|+||++++++||+||++|+||||+||.+||||||||||||||| |++|||++||
T Consensus 77 ~~~~iP~w~lNr~kD~~~G~~~~~ie~dLr~~~~~dI~Rl~~I~~yRG~RH~~GLpVRGQRTkTnaRt--g~tvGv~kkk 154 (155)
T 2xzm_M 77 EAHGIPTWLLNRINDFKDGKNYQMASNTLDTKMREDLERLKKIKSHRGLRHFWGLKVRGQHTKTSGRH--GVVCGVVRKN 154 (155)
T ss_dssp HHHCCCGGGCSEEEETTTEEEECCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHTCCSSSCCCSSSSCS--SCCCSSCCCC
T ss_pred cccCCCHHHhhcccccCCCceeEEecHHHHHHHHHhHHHHhhhceeeeeecccCCCcCCcCCccCCCC--cccccccccC
Confidence 7899999999999999999999999999999999999999999999 8899999998
Q ss_pred C
Q 030930 166 K 166 (169)
Q Consensus 166 ~ 166 (169)
|
T Consensus 155 ~ 155 (155)
T 2xzm_M 155 K 155 (155)
T ss_dssp -
T ss_pred C
Confidence 6
No 2
>3bbn_M Ribosomal protein S13; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=4.7e-54 Score=338.42 Aligned_cols=139 Identities=60% Similarity=1.038 Sum_probs=95.1
Q ss_pred ccccccccccceeeecCccCCCCCCCccccccCCCCCCC--CcccceeEEeCccCCCCeEEeEeeccccccCHHHHHHHH
Q 030930 3 QTLAMPVAPALSVICNGHNNNLLTNASLSFPVSKQPQYP--GLSIQCARVGGVEIPNNKRIEYSLQYIHGVGRTRARQIL 80 (169)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~--~i~~~~vrI~~tni~~~K~i~~ALt~I~GIG~~~A~~Ic 80 (169)
|++|||+||+++.+|+- +.|+++|++.+.+++|| .++++|+||+|||||++|.|++|||+|||||+.+|.+||
T Consensus 5 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~m~RI~gvdlp~~K~v~~aLt~IyGIG~~~A~~I~ 79 (145)
T 3bbn_M 5 SMVSVPIATSSLPLSAR-----GRSSSVSFPAPKKGGIGHGGLQIECIRIGGVEIPNHKRVEYSLQYIHGIGRSRSRQIL 79 (145)
T ss_dssp -----------------------------------------------CCCSSSCCCCSSBTTTGGGGSTTCCSSTTTGGG
T ss_pred cccccccccccchhhhc-----CCCCccccccCCchhhhcccchhheeeEeCcccCCCCEEEEeeeeecCccHHHHHHHH
Confidence 89999999999999973 68999999999999999 788999999999999999999999999999999999999
Q ss_pred HHcCCCccccCCCCHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhhhcccCccCCCCccCCccCccccccCCC
Q 030930 81 VDLKMENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKG 156 (169)
Q Consensus 81 ~~lgi~~k~~~~Ls~~el~~L~~~l~~~~Ie~dLr~~~~~nI~rL~~I~sYRG~RH~~GLPVRGQRTrTNarT~Kg 156 (169)
+++||++++++||||+|+++|.++ |+++++||+||++|+||||+||.+|||||||||||||||+||
T Consensus 80 ~~~gI~~~rv~~Lte~ei~~l~~~----------Rr~v~~nIkRL~~I~~YRGlRH~~GLPVRGQRTkTNaRTrKg 145 (145)
T 3bbn_M 80 LDLNFDNKVTKDLSEEEVIILRKE----------KRFNRVAIERLKEIRCYRGIRHKLGLPVRGQRTKNNCRTLKG 145 (145)
T ss_dssp TTTTCCSCBTTSCCSSTTHHHHSS----------CCCCSTTTHHHHCCCCSCCTTTTTTCCSSSCCTTTCCCSSCC
T ss_pred HHcCCCceEcCCCCHHHHHHHHHH----------HHHHHHHHHHHhhhceEeeeecccCCcCCCccCccccccCCC
Confidence 999998888999999999999876 666789999999999999999999999999999999999886
No 3
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=100.00 E-value=5.2e-52 Score=320.64 Aligned_cols=123 Identities=49% Similarity=0.853 Sum_probs=118.8
Q ss_pred eeEEeCccCCCCeEEeEeeccccccCHHHHHHHHHHcCCC-ccccCCCCHHHHHHHHHHHhh-cccchHHHHHHHHHHHH
Q 030930 47 CARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVSK-YMIEGDLRRFNALAIRR 124 (169)
Q Consensus 47 ~vrI~~tni~~~K~i~~ALt~I~GIG~~~A~~Ic~~lgi~-~k~~~~Ls~~el~~L~~~l~~-~~Ie~dLr~~~~~nI~r 124 (169)
|+||+|||||++|.|++|||+|||||+++|..||+++||| +.+++||||+|+++|.++|++ |.+|+||++++++||+|
T Consensus 1 m~rI~g~~i~~~k~v~~aLt~I~GIG~~~A~~I~~~~gi~~~~r~~~Lt~~ei~~l~~~i~~~~~ve~dLrr~~~~nIkR 80 (126)
T 2vqe_M 1 MARIAGVEIPRNKRVDVALTYIYGIGKARAKEALEKTGINPATRVKDLTEAEVVRLREYVENTWKLEGELRAEVAANIKR 80 (126)
T ss_dssp -CCCSTTCCCCSSBHHHHHTTSSSCCSHHHHHHTTTTTCCTTSBGGGCCHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHH
T ss_pred CceEeCccCCCCcEeeeehhccccccHHHHHHHHHHcCCCcccccCcCCHHHHHHHHHHHHHhCcchhHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999 778999999999999999985 99999999999999999
Q ss_pred HHhhhhcccCccCCCCccCCccCccccccCCCceeeeccccCCCC
Q 030930 125 LKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 169 (169)
Q Consensus 125 L~~I~sYRG~RH~~GLPVRGQRTrTNarT~Kg~~~gV~~kK~~~~ 169 (169)
|++|+||||+||.+|||||||||||||||+||.+..|++|||+|+
T Consensus 81 L~~I~~YRG~RH~~GLPVRGQRTkTNaRTrkg~~~~v~~kkk~~~ 125 (126)
T 2vqe_M 81 LMDIGCYRGLRHRRGLPVRGQRTRTNARTRKGPRKTVAGKKKAPR 125 (126)
T ss_dssp HHHTTCHHHHHHHTTCCSSSCCCSSCCHHHHCSCCCCCCCCSSCC
T ss_pred HHHHHHHhhhhhccCCcCCCccCccccccCCCcccccccccCCCC
Confidence 999999999999999999999999999999999999999998875
No 4
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=4.5e-51 Score=323.99 Aligned_cols=128 Identities=28% Similarity=0.454 Sum_probs=119.6
Q ss_pred cccccCCCCCCCCcccceeEEeCccCCCCeEEeEeeccccccCHHHHHHHHHHcCCC-ccccCCCCHHHHHHHHHHHhh-
Q 030930 30 LSFPVSKQPQYPGLSIQCARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVSK- 107 (169)
Q Consensus 30 ~~~~~~~~~~f~~i~~~~vrI~~tni~~~K~i~~ALt~I~GIG~~~A~~Ic~~lgi~-~k~~~~Ls~~el~~L~~~l~~- 107 (169)
||++ .+++|||| +||+|||||++|+|++|||+|||||+++|++||+++||| ++++++|||+|+++|.++|++
T Consensus 1 ~~~~--~~~~~~~m----~RI~g~~i~~~k~v~~ALt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i~~~ 74 (152)
T 3iz6_M 1 MSLI--AGEEFQHI----LRVLNTNVDGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVHNP 74 (152)
T ss_dssp CCCC--TTCSCCCC----CCTTTTCCCCSSBHHHHHTTSTTCCHHHHHHHHHHHTCCSSSBTTTSCHHHHHHHHHHHHSC
T ss_pred CCcc--cHHHHHHH----HHHcCCcCCCCcEeHhhhhhccCcCHHHHHHHHHHcCCCCCcEeCcCCHHHHHHHHHHHHhh
Confidence 3444 45689999 999999999999999999999999999999999999999 788999999999999999974
Q ss_pred --ccc--------------------chHHHHHHHHHHHHHHhhhhcccCccCCCCccCCccCccccccCCCceeeecccc
Q 030930 108 --YMI--------------------EGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 165 (169)
Q Consensus 108 --~~I--------------------e~dLr~~~~~nI~rL~~I~sYRG~RH~~GLPVRGQRTrTNarT~Kg~~~gV~~kK 165 (169)
|.| ++||++.+++||+||++|+||||+||.+||||||||||||||| |++|||++||
T Consensus 75 ~~~~ip~w~lNr~kD~~~G~~~~li~~dL~~~~~~dI~RL~~I~~yRG~RH~~GLpVRGQrTkTnaRt--g~tvgv~kkk 152 (152)
T 3iz6_M 75 RQFKVPDWFLNRKKDYKDGRFSQVVSNAVDMKLRDDLERLKKIRNHRGLRHYWGVRVRGQHTKTTGRR--GKTVGVSKKR 152 (152)
T ss_dssp SSCCCCCCSCSCCCSCCCCSCCTTCTHHHHHHHHHHHHHHHHHTCHHHHHHHHTCCSSCCCCSSCCHH--HHCSCCSSCC
T ss_pred cccCcchhhhhhhcccCCcceeeechhHHHHHHHHhHHHHhhhheeecccccCCCCcCCcCCcCCCCC--ceecceecCC
Confidence 654 4999999999999999999999999999999999999999999 9999999986
No 5
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.1e-50 Score=320.58 Aligned_cols=123 Identities=32% Similarity=0.530 Sum_probs=117.8
Q ss_pred CCCCCcccceeEEeCccCCCCeEEeEeeccccccCHHHHHHHHHHcCCC-ccccCCCCHHHHHHHHHHHhh---c-----
Q 030930 38 PQYPGLSIQCARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVSK---Y----- 108 (169)
Q Consensus 38 ~~f~~i~~~~vrI~~tni~~~K~i~~ALt~I~GIG~~~A~~Ic~~lgi~-~k~~~~Ls~~el~~L~~~l~~---~----- 108 (169)
++|||| +||+|||||++|+|++|||+|||||+++|+.||+++||| ++++++|||+|+++|.++|++ |
T Consensus 2 ~~~~~m----~RI~g~~i~~~k~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~i~~~i~~~~~~~iP~w 77 (148)
T 3j20_O 2 ANFRHI----VRVAGVDLDGNKQLRWALTAIKGIGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILADPVAHGIPRW 77 (148)
T ss_dssp CCBCSC----EECSSSCEECSSCHHHHHHHSTTCCHHHHHHHHHHHTCCSSSCTTBCCHHHHHHHHHHHHCHHHHCCCTT
T ss_pred hhhhHh----HHHcCccCCCCCEehhhhhhccCcCHHHHHHHHHHhCCCCCceeccCCHHHHHHHHHHHhcccccCCChh
Confidence 469999 999999999999999999999999999999999999999 778999999999999999975 3
Q ss_pred ---------------ccchHHHHHHHHHHHHHHhhhhcccCccCCCCccCCccCccccccCCCceeeeccccC
Q 030930 109 ---------------MIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 166 (169)
Q Consensus 109 ---------------~Ie~dLr~~~~~nI~rL~~I~sYRG~RH~~GLPVRGQRTrTNarT~Kg~~~gV~~kK~ 166 (169)
.+|+||++.+++||+||++|+||||+||.+||||||||||||||| |++|||++||+
T Consensus 78 ~lNr~kD~~~G~~~~~ve~dL~~~~~~dI~RL~~I~~yRG~RH~~GLpVRGQrTkTnaR~--g~tvgv~kkk~ 148 (148)
T 3j20_O 78 AVNRPKDYETGRDLHLITAKLDMAIREDIMRLRRIRAYRGIRHELGLPVRGQRTRSNFRR--GQTVGVSRKKK 148 (148)
T ss_dssp TSSEEEETTTEEEECCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHTCCSSSCCCSSCSCS--SCCCCCSSCCC
T ss_pred hhcccCCCCCCceeEEechHHHHHHHHHHHHHHHhCcEEeecccCCCcCCCCCCcCCCCc--CcccceeccCC
Confidence 799999999999999999999999999999999999999999997 99999999875
No 6
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=100.00 E-value=1.2e-48 Score=308.35 Aligned_cols=120 Identities=31% Similarity=0.487 Sum_probs=113.5
Q ss_pred cccccCCCCCCCCcccceeEEeCccCCCCeEEeEeeccccccCHHHHHHHHHHcCCC-ccccCCCCHHHHHHHHHHHhh-
Q 030930 30 LSFPVSKQPQYPGLSIQCARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVSK- 107 (169)
Q Consensus 30 ~~~~~~~~~~f~~i~~~~vrI~~tni~~~K~i~~ALt~I~GIG~~~A~~Ic~~lgi~-~k~~~~Ls~~el~~L~~~l~~- 107 (169)
||++.+++++|||| +||+|||||++|+|++|||+|||||+++|++||+++||| ++++++|||+|+++|.++|++
T Consensus 1 ~~~~~~~~~~~~~~----~RI~g~~i~~~k~v~~ALt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i~~~ 76 (146)
T 3u5c_S 1 MSLVVQEQGSFQHI----LRLLNTNVDGNIKIVYALTTIKGVGRRYSNLVCKKADVDLHKRAGELTQEELERIVQIMQNP 76 (146)
T ss_dssp -CCCCCCCSCCCSS----BCCTTSCBCSSSCTTTTGGGSTTCCHHHHHHHHHHHTCCTTSCSSSCCHHHHHHHHHHHTCT
T ss_pred CCccCCCHHHhhhh----hhhcCccCCCCcchHhhHhhhcCCCHHHHHHHHHHcCCCCCceeccCCHHHHHHHHHHHHhh
Confidence 67777777789999 999999999999999999999999999999999999999 788999999999999999974
Q ss_pred --cc--------------------cchHHHHHHHHHHHHHHhhhhcccCccCCCCccCCccCcccccc
Q 030930 108 --YM--------------------IEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRT 153 (169)
Q Consensus 108 --~~--------------------Ie~dLr~~~~~nI~rL~~I~sYRG~RH~~GLPVRGQRTrTNarT 153 (169)
|. +|+||++.+++||+||++|+||||+||.+|||||||||||||||
T Consensus 77 ~~~~iP~w~lNR~kD~~~G~~~~lie~dL~~~~~~dI~RL~~I~~yRG~RH~~GLpVRGQrTkTnaR~ 144 (146)
T 3u5c_S 77 THYKIPAWFLNRQNDITDGKDYHTLANNVESKLRDDLERLKKIRAHRGIRHFWGLRVRGQHTKTTGRR 144 (146)
T ss_dssp TTTTCCSTTCTBCSCSSSCCCBCCCTHHHHHHHHHHHHHHHHHTCHHHHHHHTTCCCSCCCCSSSCCS
T ss_pred cccCccHHHhhhhhcccccchheeehHHHHHHHHHhhHHHHhhceeeeecccCCCCCCccCCCcCCCC
Confidence 54 49999999999999999999999999999999999999999998
No 7
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=100.00 E-value=5.7e-49 Score=299.13 Aligned_cols=112 Identities=46% Similarity=0.814 Sum_probs=108.5
Q ss_pred eEEeCccCCCCeEEeEeeccccccCHHHHHHHHHHcCCC-ccccCCCCHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 030930 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLK 126 (169)
Q Consensus 48 vrI~~tni~~~K~i~~ALt~I~GIG~~~A~~Ic~~lgi~-~k~~~~Ls~~el~~L~~~l~~~~Ie~dLr~~~~~nI~rL~ 126 (169)
.||+|||||++|+|++|||+|||||+++|+.||+++||| ++++++|||+|+++|.++|++|.||+||++++++||+||+
T Consensus 1 ~RI~g~~i~~~k~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~~l~~~i~~~~ie~dLr~~~~~dI~RL~ 80 (114)
T 3r8n_M 1 ARIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEVAKFVVEGDLRREISMSIKRLM 80 (114)
T ss_dssp CCTTSSCCCCSSCHHHHGGGSTTCCHHHHHHHHHHTTCCTTCCSTTCCHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHH
T ss_pred CeeCCccCCCCCEeHhhHhhhcCcCHHHHHHHHHHcCcCcccCcccCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999999 7889999999999999999999999999999999999999
Q ss_pred hhhhcccCccCCCCccCCccCccccccCCCcee
Q 030930 127 EIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRV 159 (169)
Q Consensus 127 ~I~sYRG~RH~~GLPVRGQRTrTNarT~Kg~~~ 159 (169)
+|+||||+||.+|||||||||||||||+||.+.
T Consensus 81 ~I~~yRG~RH~~GLpVRGQrTkTnaRTrkg~~~ 113 (114)
T 3r8n_M 81 DLGCYRGLRHRRGLPVRGQRTKTNARTRKGPRK 113 (114)
T ss_dssp HHTCHHHHHHHTTSCCSSCCSSSCCHHHHCSCC
T ss_pred HhceeeeecccCCCCCCCCCCCCcccccCCCCC
Confidence 999999999999999999999999999998753
No 8
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=92.06 E-value=0.086 Score=34.91 Aligned_cols=37 Identities=24% Similarity=0.347 Sum_probs=30.8
Q ss_pred eeccccccCHHHHHHHHHHcCCCccccCCCCHHHHHHH
Q 030930 64 SLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITI 101 (169)
Q Consensus 64 ALt~I~GIG~~~A~~Ic~~lgi~~k~~~~Ls~~el~~L 101 (169)
.|..|+|||...+..+++.+| +-+.+.+.|.+|+..+
T Consensus 5 ~L~~IpGIG~kr~~~LL~~Fg-s~~~i~~As~eeL~~v 41 (63)
T 2a1j_A 5 FLLKMPGVNAKNCRSLMHHVK-NIAELAALSQDELTSI 41 (63)
T ss_dssp HHHTSTTCCHHHHHHHHHHCS-SHHHHHTCCHHHHHHH
T ss_pred HHHcCCCCCHHHHHHHHHHcC-CHHHHHHCCHHHHHHH
Confidence 478999999999999999998 3334577888888877
No 9
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=90.40 E-value=0.29 Score=41.75 Aligned_cols=51 Identities=14% Similarity=0.272 Sum_probs=43.7
Q ss_pred CeEEeEee---ccccccCHHHHHHHHHHcCCCccc-cCCCCHHHHHHHHHHHhhc
Q 030930 58 NKRIEYSL---QYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKY 108 (169)
Q Consensus 58 ~K~i~~AL---t~I~GIG~~~A~~Ic~~lgi~~k~-~~~Ls~~el~~L~~~l~~~ 108 (169)
+.+|..+| +-|-|||..++..+|=.+||+|.+ +++|+++|++.|.+.+...
T Consensus 174 ~~~IK~~LLDQ~viaGiGNIYa~EiLf~AgI~P~~~~~~Ls~~~~~~L~~ai~~V 228 (287)
T 3w0f_A 174 DRMLCDVLLDQRVLPGVGNIIKNEALFDSGLHPAVKVCQLSDKQACHLVKMTRDF 228 (287)
T ss_dssp SSBHHHHHHCTTTSTTCCHHHHHHHHHHHTCCTTCBGGGSCHHHHHHHHHHHHHH
T ss_pred cccHHHHHhcCCccccccHHHHHHHHHHccCCccCccccCCHHHHHHHHHHHHHH
Confidence 34576777 668899999999999999999665 6999999999999888664
No 10
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=90.39 E-value=0.3 Score=40.61 Aligned_cols=49 Identities=16% Similarity=0.323 Sum_probs=41.1
Q ss_pred eEEeEee---ccccccCHHHHHHHHHHcCCCccc-cCCCCHHHHHHHHHHHhh
Q 030930 59 KRIEYSL---QYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSK 107 (169)
Q Consensus 59 K~i~~AL---t~I~GIG~~~A~~Ic~~lgi~~k~-~~~Ls~~el~~L~~~l~~ 107 (169)
.+|..+| +-|-|||.-+|..+|=.+||+|.+ +++|+++|++.|-+.+..
T Consensus 151 ~~Ik~~LLDQ~vvaGiGNiYadEiLf~a~I~P~~~a~~Ls~~~~~~L~~~i~~ 203 (262)
T 1k3x_A 151 RQFAGLLLDQAFLAGLGNYLRVEILWQVGLTGNHKAKDLNAAQLDALAHALLE 203 (262)
T ss_dssp SCHHHHTTCTTTSBTCCHHHHHHHHHHHTCCSSCCGGGSCHHHHHHHHHHHHH
T ss_pred ccHHHHHhcCCeeecccHHHHHHHHHHcCCCcCCCcccCCHHHHHHHHHHHHH
Confidence 5676666 345899999999999999999665 699999999999877654
No 11
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=90.21 E-value=0.32 Score=40.73 Aligned_cols=51 Identities=14% Similarity=0.245 Sum_probs=42.8
Q ss_pred CCeEEeEee---ccccccCHHHHHHHHHHcCCCccc-cCCCCHHHHHHHHHHHhh
Q 030930 57 NNKRIEYSL---QYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSK 107 (169)
Q Consensus 57 ~~K~i~~AL---t~I~GIG~~~A~~Ic~~lgi~~k~-~~~Ls~~el~~L~~~l~~ 107 (169)
.+.+|.-+| +-|-|||.-+|..+|=.+||+|.+ +++|+++|++.|-+.+..
T Consensus 154 ~~~~IK~~LlDQ~~vaGiGNiYa~EiLf~a~I~P~~~~~~Ls~~~~~~L~~~i~~ 208 (273)
T 3u6p_A 154 TKRSVKALLLDCTVVAGFGNIYVDESLFRAGILPGRPAASLSSKEIERLHEEMVA 208 (273)
T ss_dssp CCSBHHHHHHCTTTSTTCCHHHHHHHHHHHTCCTTSBGGGCCHHHHHHHHHHHHH
T ss_pred CcchHHHHHhcCCccccccHHHHHHHHHHcCCCccCccccCCHHHHHHHHHHHHH
Confidence 356676667 568899999999999999999665 699999999999887654
No 12
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=89.29 E-value=0.44 Score=39.76 Aligned_cols=51 Identities=18% Similarity=0.288 Sum_probs=42.6
Q ss_pred CCeEEeEee---ccccccCHHHHHHHHHHcCCCccc-cCCCCHHHHHHHHHHHhh
Q 030930 57 NNKRIEYSL---QYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSK 107 (169)
Q Consensus 57 ~~K~i~~AL---t~I~GIG~~~A~~Ic~~lgi~~k~-~~~Ls~~el~~L~~~l~~ 107 (169)
.+.+|.-+| +-|-|||..+|..+|=.+||+|.+ +++|+++|++.|-+.+..
T Consensus 142 ~~~~IK~~LlDQ~~vaGiGNiYa~EiLf~a~I~P~~~~~~Ls~~~~~~L~~~i~~ 196 (266)
T 1ee8_A 142 SARPLKALLLDQRLAAGVGNIYADEALFRARLSPFRPARSLTEEEARRLYRALRE 196 (266)
T ss_dssp CCSBHHHHHHHSSSSTTCCHHHHHHHHHHTTCCSSSBGGGCCHHHHHHHHHHHHH
T ss_pred CCccHHHHHhccCccccccHhHHHHHHHHcCCCCCCCcccCCHHHHHHHHHHHHH
Confidence 355677777 568899999999999999999665 699999999999876643
No 13
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=89.16 E-value=0.45 Score=39.67 Aligned_cols=50 Identities=20% Similarity=0.336 Sum_probs=41.8
Q ss_pred CeEEeEee---ccccccCHHHHHHHHHHcCCCccc-cCCCCHHHHHHHHHHHhh
Q 030930 58 NKRIEYSL---QYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSK 107 (169)
Q Consensus 58 ~K~i~~AL---t~I~GIG~~~A~~Ic~~lgi~~k~-~~~Ls~~el~~L~~~l~~ 107 (169)
+.+|.-+| +-|-|||..+|..+|=.+||+|.+ +++|+++|++.|-+.+..
T Consensus 153 ~~~IK~~LLDQ~vvaGiGNiYadEiLf~a~I~P~~~a~~Ls~~~~~~L~~~i~~ 206 (271)
T 2xzf_A 153 TKKIKPYLLEQTLVAGLGNIYVDEVLWLAKIHPEKETNQLIESSIHLLHDSIIE 206 (271)
T ss_dssp CSBHHHHHHTSSSSSCCCHHHHHHHHHHTTCCTTCBGGGCCHHHHHHHHHHHHH
T ss_pred CccHHHHHhcCCeecccChhHHHHHHHHcCCCcCCCcccCCHHHHHHHHHHHHH
Confidence 45666666 567899999999999999999665 699999999999877644
No 14
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=89.14 E-value=0.44 Score=39.74 Aligned_cols=50 Identities=18% Similarity=0.190 Sum_probs=41.8
Q ss_pred CeEEeEee---ccccccCHHHHHHHHHHcCCCccc-cCCCCHHHHHHHHHHHhh
Q 030930 58 NKRIEYSL---QYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSK 107 (169)
Q Consensus 58 ~K~i~~AL---t~I~GIG~~~A~~Ic~~lgi~~k~-~~~Ls~~el~~L~~~l~~ 107 (169)
+.+|.-+| +-|-|||..+|..+|=.+||+|.+ +++|+++|++.|-+.+..
T Consensus 150 ~~~IK~~LlDQ~~vaGiGNiYa~EiLf~a~I~P~~~a~~Ls~~~~~~L~~~i~~ 203 (268)
T 1k82_A 150 KTAIKPWLMDNKLVVGVGNIYASESLFAAGIHPDRLASSLSLAECELLARVIKA 203 (268)
T ss_dssp CSBHHHHHTCTTTCSSCCHHHHHHHHHHHTCCTTSBGGGCCHHHHHHHHHHHHH
T ss_pred CCcHHHHHhcCCeeeccCchHHHHHHHHcCCCCCCCcccCCHHHHHHHHHHHHH
Confidence 45666666 568899999999999999999665 699999999999876643
No 15
>3vk8_A Probable formamidopyrimidine-DNA glycosylase; DNA glycosylase, hneil1 ortholog, DNA lesion, thymine glycol zincless finger; HET: DNA CTG; 2.00A {Acanthamoeba polyphaga mimivirus} PDB: 3vk7_A* 3a42_A 3a46_A* 3a45_A*
Probab=88.91 E-value=0.44 Score=40.41 Aligned_cols=51 Identities=16% Similarity=0.195 Sum_probs=42.7
Q ss_pred CCeEEeEee---cc-ccccCHHHHHHHHHHcCCCccc-cCCCCHHHHHHHHHHHhh
Q 030930 57 NNKRIEYSL---QY-IHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSK 107 (169)
Q Consensus 57 ~~K~i~~AL---t~-I~GIG~~~A~~Ic~~lgi~~k~-~~~Ls~~el~~L~~~l~~ 107 (169)
.+.+|.-+| +- |-|||..++..||=.+||+|.+ +++|+++|++.|-+.+..
T Consensus 153 ~~~~Ik~~LLDQ~~~vaGIGNiYa~EiLf~A~I~P~~~~~~Ls~~~~~~L~~~i~~ 208 (295)
T 3vk8_A 153 YKQPIVALLMDQKKIGSGLGNYLVAEILYRAKIDPHKLGSNLTDQEIENLWYWIKY 208 (295)
T ss_dssp CCSBHHHHHHCSSSSCBCCCHHHHHHHHHHTTBCTTCBGGGCCHHHHHHHHHHHHH
T ss_pred cCchHHHHHhcCCcccccccHHHHHHHHHHcCCCccCccccCCHHHHHHHHHHHHH
Confidence 456677777 44 8999999999999999999665 699999999999877643
No 16
>3twl_A Formamidopyrimidine-DNA glycosylase 1; helix two turns helix, zinc-LESS finger, hydrolase, DNA DAMA repair, DNA-binding, glycosidase, lyase; 1.70A {Arabidopsis thaliana} PDB: 3twm_A* 3twk_A
Probab=88.59 E-value=0.52 Score=40.29 Aligned_cols=50 Identities=20% Similarity=0.342 Sum_probs=40.9
Q ss_pred CeEEeEee---ccccccCHHHHHHHHHHcCCCccc-cCCCCHHHHHHHHHHHhh
Q 030930 58 NKRIEYSL---QYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSK 107 (169)
Q Consensus 58 ~K~i~~AL---t~I~GIG~~~A~~Ic~~lgi~~k~-~~~Ls~~el~~L~~~l~~ 107 (169)
+.+|..+| +-|-|||.-+|..+|=.+||++.+ +++|+++|++.|-+.+..
T Consensus 168 ~~~IK~~LLDQ~vvaGIGNiYadEiLf~AgIhP~~~a~~Ls~~e~~~L~~~i~~ 221 (310)
T 3twl_A 168 KITIKPLLLDQGYISGIGNWIADEVLYQARIHPLQTASSLSKEQCEALHTSIKE 221 (310)
T ss_dssp CSBHHHHHHCTTTSBSCCHHHHHHHHHHTTCCTTSBGGGCCHHHHHHHHHHHHH
T ss_pred cchHHHHHhcCccccCCcHHHHHHHHHHcCCCcCCCcccCCHHHHHHHHHHHHH
Confidence 45555556 447899999999999999999665 699999999999776643
No 17
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=88.03 E-value=0.12 Score=34.85 Aligned_cols=33 Identities=27% Similarity=0.337 Sum_probs=21.8
Q ss_pred CccCCCCeEEeEeeccccccCHHHHHHHHHHcC
Q 030930 52 GVEIPNNKRIEYSLQYIHGVGRTRARQILVDLK 84 (169)
Q Consensus 52 ~tni~~~K~i~~ALt~I~GIG~~~A~~Ic~~lg 84 (169)
|.-++.++.....|..|+|||..+|..|++.+|
T Consensus 13 ~~~~~~~~~~~~~L~~I~gIG~~~A~~Ll~~fg 45 (78)
T 1kft_A 13 GLVPRGSHMNTSSLETIEGVGPKRRQMLLKYMG 45 (78)
T ss_dssp ----------CCGGGGCTTCSSSHHHHHHHHHS
T ss_pred hHHHhHHHHHHHHHhcCCCCCHHHHHHHHHHcC
Confidence 445666777888999999999999999999986
No 18
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=87.02 E-value=0.84 Score=32.94 Aligned_cols=50 Identities=14% Similarity=0.210 Sum_probs=40.4
Q ss_pred eEeeccccccCHHHHHHHHHHcCCCc----cccCCCCHHHHHHHHHHHhhcccc
Q 030930 62 EYSLQYIHGVGRTRARQILVDLKMEN----KITKDMSEEELITIRDEVSKYMIE 111 (169)
Q Consensus 62 ~~ALt~I~GIG~~~A~~Ic~~lgi~~----k~~~~Ls~~el~~L~~~l~~~~Ie 111 (169)
...|+.++|||...|..|...=.+.+ ..+.-+.+..+++|..++..|.+.
T Consensus 25 ~~eL~~lpGIG~~~A~~IV~~GpF~s~edL~~V~Gig~~~~e~l~~~l~~f~v~ 78 (97)
T 3arc_U 25 IAAFIQYRGLYPTLAKLIVKNAPYESVEDVLNIPGLTERQKQILRENLEHFTVT 78 (97)
T ss_dssp GGGGGGSTTCTTHHHHHHHHHCCCSSGGGGGGCTTCCHHHHHHHHHTGGGEECC
T ss_pred HHHHhHCCCCCHHHHHHHHHcCCCCCHHHHHhccCCCHHHHHHHHHHhceeEec
Confidence 45789999999999999999655542 235779999999999999887664
No 19
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=85.97 E-value=0.23 Score=34.55 Aligned_cols=25 Identities=20% Similarity=0.405 Sum_probs=22.2
Q ss_pred EEeEeeccccccCHHHHHHHHHHcC
Q 030930 60 RIEYSLQYIHGVGRTRARQILVDLK 84 (169)
Q Consensus 60 ~i~~ALt~I~GIG~~~A~~Ic~~lg 84 (169)
.+.++|+.|+|||...|..|++.+|
T Consensus 29 ~~~~~L~~IpgIG~~~A~~Ll~~fg 53 (91)
T 2a1j_B 29 RVTECLTTVKSVNKTDSQTLLTTFG 53 (91)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHHS
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHCC
Confidence 3557899999999999999999987
No 20
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=85.38 E-value=0.35 Score=33.97 Aligned_cols=40 Identities=23% Similarity=0.291 Sum_probs=30.7
Q ss_pred EeEeeccccccCHHHHHHHHHHcCCCccccCCCCHHHHHHH
Q 030930 61 IEYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITI 101 (169)
Q Consensus 61 i~~ALt~I~GIG~~~A~~Ic~~lgi~~k~~~~Ls~~el~~L 101 (169)
....|..|+|||......+++.+| +-..+.+.|.+|+..+
T Consensus 16 ~~s~L~~IpGIG~kr~~~LL~~Fg-Sl~~i~~AS~eEL~~v 55 (84)
T 1z00_B 16 PQDFLLKMPGVNAKNCRSLMHHVK-NIAELAALSQDELTSI 55 (84)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHSS-CHHHHHHSCHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHcC-CHHHHHHCCHHHHHHH
Confidence 345688999999999999999988 2223466677777776
No 21
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=84.44 E-value=1.2 Score=39.82 Aligned_cols=44 Identities=30% Similarity=0.453 Sum_probs=39.2
Q ss_pred ccccccCHHHHHHHHHHcCCC-ccccCCCCHHHHHHHHHHHhhcc
Q 030930 66 QYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVSKYM 109 (169)
Q Consensus 66 t~I~GIG~~~A~~Ic~~lgi~-~k~~~~Ls~~el~~L~~~l~~~~ 109 (169)
..+-+||..+|..||..+|++ .+..++|+.+|+..|.+.+.++.
T Consensus 261 ~~f~~v~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 305 (471)
T 1mu5_A 261 NEFQSIGDTTADKILELAGLKPNKKVKNLTEEEITRLVETFKKYE 305 (471)
T ss_dssp TSSSSCCHHHHHHHHHHTTCCTTSBGGGCCTTHHHHHHHHHHHCC
T ss_pred ccccccCHHHHHHHHHhcCCCCCCChhhcCHHHHHHHHHHHHhcc
Confidence 568899999999999999999 55579999999999999998663
No 22
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=82.37 E-value=1.7 Score=33.42 Aligned_cols=53 Identities=15% Similarity=0.209 Sum_probs=41.2
Q ss_pred CeEEeEeeccccccCHHHHHHHHHHcCCC--c--cccCCCCHHHHHHHHHHHhhccc
Q 030930 58 NKRIEYSLQYIHGVGRTRARQILVDLKME--N--KITKDMSEEELITIRDEVSKYMI 110 (169)
Q Consensus 58 ~K~i~~ALt~I~GIG~~~A~~Ic~~lgi~--~--k~~~~Ls~~el~~L~~~l~~~~I 110 (169)
|..=...|+.++|||...|..|.+.-.+. . ..+..+.+.+.+.|.++.+++.+
T Consensus 58 NtA~~~eL~~LpGiGp~~A~~II~~GpF~svedL~~V~GIg~k~~e~l~~~~~~~tv 114 (134)
T 1s5l_U 58 NNTNIAAFIQYRGLYPTLAKLIVKNAPYESVEDVLNIPGLTERQKQILRENLEHFTV 114 (134)
T ss_dssp TTSCGGGGGGSTTCTHHHHHHHHHTCCCSSGGGGGGCTTCCHHHHHHHHHHHTTEEC
T ss_pred cccCHHHHHHCCCCCHHHHHHHHHcCCCCCHHHHHhCCCCCHHHHHHHHHhhcceee
Confidence 33345678999999999999999654454 1 23688999999999999888765
No 23
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=79.09 E-value=1.5 Score=29.13 Aligned_cols=44 Identities=20% Similarity=0.217 Sum_probs=30.8
Q ss_pred EeEeeccccccCHHHHHHHHHHcCCCc-c---ccCCCCHHHHHHHHHH
Q 030930 61 IEYSLQYIHGVGRTRARQILVDLKMEN-K---ITKDMSEEELITIRDE 104 (169)
Q Consensus 61 i~~ALt~I~GIG~~~A~~Ic~~lgi~~-k---~~~~Ls~~el~~L~~~ 104 (169)
-...|..|+|||..+|..|++...+.+ . .+..+.+...++|..+
T Consensus 25 ~~~~L~~ipGIG~~~A~~Il~~r~~~s~~eL~~v~Gig~k~~~~i~~~ 72 (75)
T 2duy_A 25 SLEELMALPGIGPVLARRIVEGRPYARVEDLLKVKGIGPATLERLRPY 72 (75)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHTCCCSSGGGGGGSTTCCHHHHHHHGGG
T ss_pred CHHHHHhCCCCCHHHHHHHHHHcccCCHHHHHhCCCCCHHHHHHHHHh
Confidence 344689999999999999999875542 1 1355666666666543
No 24
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=78.84 E-value=0.89 Score=31.18 Aligned_cols=24 Identities=17% Similarity=0.357 Sum_probs=21.5
Q ss_pred EeEeeccccccCHHHHHHHHHHcC
Q 030930 61 IEYSLQYIHGVGRTRARQILVDLK 84 (169)
Q Consensus 61 i~~ALt~I~GIG~~~A~~Ic~~lg 84 (169)
+..+|+.|+|||...|..|++.+|
T Consensus 17 ~~~~L~~IpgIG~~~A~~Ll~~fg 40 (89)
T 1z00_A 17 VTECLTTVKSVNKTDSQTLLTTFG 40 (89)
T ss_dssp HHHHHTTSSSCCHHHHHHHHHHTC
T ss_pred HHHHHHcCCCCCHHHHHHHHHHCC
Confidence 456799999999999999999886
No 25
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=76.50 E-value=1.1 Score=29.06 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=21.9
Q ss_pred EEeEeeccccccCHHHHHHHHHHcC
Q 030930 60 RIEYSLQYIHGVGRTRARQILVDLK 84 (169)
Q Consensus 60 ~i~~ALt~I~GIG~~~A~~Ic~~lg 84 (169)
..+..|+.|+|||...|..|++.+|
T Consensus 11 ~~~~~L~~i~giG~~~a~~Ll~~fg 35 (75)
T 1x2i_A 11 RQRLIVEGLPHVSATLARRLLKHFG 35 (75)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHHC
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHcC
Confidence 3466799999999999999999876
No 26
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=74.18 E-value=1.5 Score=36.21 Aligned_cols=49 Identities=16% Similarity=0.273 Sum_probs=39.4
Q ss_pred CCeEEeEeeccccccCHHHHHHHHHHcCCC-ccccCCCCHHHHHHHHHHHh
Q 030930 57 NNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVS 106 (169)
Q Consensus 57 ~~K~i~~ALt~I~GIG~~~A~~Ic~~lgi~-~k~~~~Ls~~el~~L~~~l~ 106 (169)
..|.+..+|..+ |.+......++..+||+ ..++.+|+.+|+..|.+.++
T Consensus 219 rrKtL~n~L~~~-~~~~~~~~~~l~~~~i~~~~R~e~Ls~~~f~~L~~~~~ 268 (271)
T 3fut_A 219 RRKTLLNALAAA-GYPKARVEEALRALGLPPRVRAEELDLEAFRRLREGLE 268 (271)
T ss_dssp TTSCHHHHHHHT-TCCHHHHHHHHHHTTCCTTCCGGGCCHHHHHHHHHHHC
T ss_pred CCcHHHHHHHhh-cCCHHHHHHHHHHCCcCCCCChhhCCHHHHHHHHHHHH
Confidence 356667777554 45677888999999999 67899999999999988774
No 27
>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=72.11 E-value=2.9 Score=28.92 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=20.4
Q ss_pred HHHcCCCccccCCCCHHHHHHHHH
Q 030930 80 LVDLKMENKITKDMSEEELITIRD 103 (169)
Q Consensus 80 c~~lgi~~k~~~~Ls~~el~~L~~ 103 (169)
+++|||+..-..+||+||+.++..
T Consensus 37 L~kLGI~ktdP~~LT~eEi~~FaR 60 (71)
T 2eo2_A 37 LKKLGIHKTDPSTLTEEEVRKFAR 60 (71)
T ss_dssp HHHHTCCCCSTTTCCHHHHHHHHH
T ss_pred HHHcCCCCCCcccCCHHHHhhcee
Confidence 578999977789999999988754
No 28
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=71.59 E-value=2.1 Score=35.12 Aligned_cols=39 Identities=18% Similarity=0.346 Sum_probs=29.9
Q ss_pred eEeeccccccCHHHHHHHHHHcCCCccccCCCCHHHHHHH
Q 030930 62 EYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITI 101 (169)
Q Consensus 62 ~~ALt~I~GIG~~~A~~Ic~~lgi~~k~~~~Ls~~el~~L 101 (169)
...|..|+|||..+|..+++.+| +-+.+.+-+.+|+..+
T Consensus 167 ~s~LdgIpGIG~k~ak~Ll~~Fg-Sl~~i~~As~EeL~~V 205 (220)
T 2nrt_A 167 RSVLDNVPGIGPIRKKKLIEHFG-SLENIRSASLEEIARV 205 (220)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHC-SHHHHHTSCHHHHHHH
T ss_pred cccccCCCCcCHHHHHHHHHHcC-CHHHHHhCCHHHHHHH
Confidence 45688999999999999999998 3223455577777665
No 29
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=66.89 E-value=6.8 Score=31.66 Aligned_cols=25 Identities=20% Similarity=0.229 Sum_probs=21.5
Q ss_pred EeEeec-cccccCHHHHHHHHHHcCC
Q 030930 61 IEYSLQ-YIHGVGRTRARQILVDLKM 85 (169)
Q Consensus 61 i~~ALt-~I~GIG~~~A~~Ic~~lgi 85 (169)
..-.|. +++|||+.+|..+|..+|.
T Consensus 127 ~r~~L~~~l~GVG~kTA~~vL~~~g~ 152 (219)
T 3n0u_A 127 SREFLVRNAKGIGWKEASHFLRNTGV 152 (219)
T ss_dssp HHHHHHHHSTTCCHHHHHHHHHTTTC
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 456788 9999999999999977776
No 30
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=63.70 E-value=3.4 Score=32.73 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=22.2
Q ss_pred EEeEeeccccccCHHHHHHHHHHcCC
Q 030930 60 RIEYSLQYIHGVGRTRARQILVDLKM 85 (169)
Q Consensus 60 ~i~~ALt~I~GIG~~~A~~Ic~~lgi 85 (169)
...-.|.+++|||+.+|..||..+|.
T Consensus 114 ~~~~~L~~lpGIG~kTA~~il~~~~~ 139 (207)
T 3fhg_A 114 LARERLLNIKGIGMQEASHFLRNVGY 139 (207)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCcCHHHHHHHHHHhCC
Confidence 45678999999999999999987565
No 31
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=63.52 E-value=3.5 Score=33.46 Aligned_cols=43 Identities=14% Similarity=0.270 Sum_probs=34.1
Q ss_pred CeEEeEeeccccccCHHHHHHHHHHcCCC-ccccCCCCHHHHHHHHHHHh
Q 030930 58 NKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVS 106 (169)
Q Consensus 58 ~K~i~~ALt~I~GIG~~~A~~Ic~~lgi~-~k~~~~Ls~~el~~L~~~l~ 106 (169)
.|.+..+|..+++ ..++..+||+ +.++.+||-+|+..|.+.+.
T Consensus 206 rK~l~n~l~~~~~------~~~l~~~~i~~~~R~e~Ls~~~f~~l~~~~~ 249 (252)
T 1qyr_A 206 RKTIRNSLGNLFS------VEVLTGMGIDPAMRAENISVAQYCQMANYLA 249 (252)
T ss_dssp TSBHHHHTTTTCC------HHHHHHTTCCTTSBGGGSCHHHHHHHHHHHH
T ss_pred CcHHHHHHhhhhh------HHHHHHcCCCCCCChHHCCHHHHHHHHHHHH
Confidence 5566667766553 5578899999 77899999999999988774
No 32
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=61.50 E-value=8.5 Score=31.52 Aligned_cols=72 Identities=17% Similarity=0.422 Sum_probs=48.0
Q ss_pred EeEeeccccccCHHHHHHHHHHcCCCccccCCCCHHHHHHHHHHHhh------c-----cc-chHH-------HH-----
Q 030930 61 IEYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITIRDEVSK------Y-----MI-EGDL-------RR----- 116 (169)
Q Consensus 61 i~~ALt~I~GIG~~~A~~Ic~~lgi~~k~~~~Ls~~el~~L~~~l~~------~-----~I-e~dL-------r~----- 116 (169)
+..+|.+.+|||+++|.++.--+= +-.+++...|.+.|.+ + .+ +.|+ +|
T Consensus 24 LI~~l~~LPGIG~KsA~RlA~hLL-------~~~~~~~~~La~al~~~~~~i~~C~~C~nlte~~~C~IC~d~~Rd~~~i 96 (212)
T 3vdp_A 24 LIEELSKLPGIGPKTAQRLAFFII-------NMPLDEVRSLSQAIIEAKEKLRYCKICFNITDKEVCDICSDENRDHSTI 96 (212)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHHHT-------TSCHHHHHHHHHHHHHHHHHCEECTTTCCEESSSSCHHHHCTTSEEEEE
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHHHHhCCcCCCCCCCCCCCcCCCCCCCCCCCCEE
Confidence 456889999999999999975432 3356777777776653 1 11 1110 11
Q ss_pred ---HHHHHHHHHHhhhhcccCccCCC
Q 030930 117 ---FNALAIRRLKEIQCYRGIRHIQG 139 (169)
Q Consensus 117 ---~~~~nI~rL~~I~sYRG~RH~~G 139 (169)
..-.|+.-+-+.+.|+|.=|-+|
T Consensus 97 CVVE~~~Dv~aiE~t~~y~G~YhVLg 122 (212)
T 3vdp_A 97 CVVSHPMDVVAMEKVKEYKGVYHVLH 122 (212)
T ss_dssp EEESSHHHHHHHHTTSCCCEEEEECS
T ss_pred EEECCHHHHHHHHhhCccceEEEecC
Confidence 01356777888999999999887
No 33
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=60.07 E-value=1 Score=35.98 Aligned_cols=39 Identities=23% Similarity=0.160 Sum_probs=29.3
Q ss_pred eEEeCccCCCCeEEeEeeccccccCHHHHHHHHHHcCCC
Q 030930 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME 86 (169)
Q Consensus 48 vrI~~tni~~~K~i~~ALt~I~GIG~~~A~~Ic~~lgi~ 86 (169)
.|+.|-.=...+.++.-|.+|.|||+.+|..|++.+|-+
T Consensus 57 ~~l~gf~~~~ek~~f~~L~~v~GIGpk~A~~iL~~f~~~ 95 (191)
T 1ixr_A 57 LSLYGFPDEENLALFELLLSVSGVGPKVALALLSALPPR 95 (191)
T ss_dssp CCEEEESSHHHHHHHHHHHSSSCCCHHHHHHHHHHSCHH
T ss_pred HHhhccCCHHHHHHHHHHhcCCCcCHHHHHHHHHhCChH
Confidence 445554444555565678999999999999999998863
No 34
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=57.36 E-value=4.9 Score=34.27 Aligned_cols=49 Identities=6% Similarity=0.154 Sum_probs=38.8
Q ss_pred CeEEeEeeccccccCHHHHHHHHHHcCCCccccCCCCHHHHHHHHHHHhhc
Q 030930 58 NKRIEYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITIRDEVSKY 108 (169)
Q Consensus 58 ~K~i~~ALt~I~GIG~~~A~~Ic~~lgi~~k~~~~Ls~~el~~L~~~l~~~ 108 (169)
++.+...|... +..+.+..+++..|++.+...+|+++|...|.+.|.+|
T Consensus 280 ~~~~~~~l~~~--lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 328 (401)
T 2gqf_A 280 KQMLKTILVRL--LPKKLVELWIEQGIVQDEVIANISKVRVKNLVDFIHHW 328 (401)
T ss_dssp TSBHHHHHTTT--SCHHHHHHHHHTTSSCCCBGGGCCHHHHHHHHHHHHCE
T ss_pred cccHHHHhhhh--cCHHHHHHHHHHcCCCCCchhhCCHHHHHHHHHHHhcC
Confidence 34444455543 67899999999999987677999999999999998764
No 35
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=56.39 E-value=4.8 Score=32.63 Aligned_cols=39 Identities=18% Similarity=0.146 Sum_probs=30.5
Q ss_pred eEEeCccCCCCeEEeEeeccccccCHHHHHHHHHHcCCC
Q 030930 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME 86 (169)
Q Consensus 48 vrI~~tni~~~K~i~~ALt~I~GIG~~~A~~Ic~~lgi~ 86 (169)
..++|-.-...+.++.-|.+|.|||+.+|..|+..++.+
T Consensus 73 ~~LyGF~~~~Er~lf~~L~sv~GIGpk~A~~Ils~~~~~ 111 (212)
T 2ztd_A 73 MTLYGFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAP 111 (212)
T ss_dssp EEEEEESSHHHHHHHHHHHTSTTCCHHHHHHHHHHSCHH
T ss_pred cceEecCcHHHHHHHHHhcCcCCcCHHHHHHHHHhCCHH
Confidence 345554446666677779999999999999999988864
No 36
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=56.02 E-value=12 Score=25.91 Aligned_cols=22 Identities=18% Similarity=0.219 Sum_probs=19.3
Q ss_pred eEeeccccccCHHHHHHHHHHc
Q 030930 62 EYSLQYIHGVGRTRARQILVDL 83 (169)
Q Consensus 62 ~~ALt~I~GIG~~~A~~Ic~~l 83 (169)
...|+.|+|||...|..|++..
T Consensus 39 ~~~L~~ipGIG~~~A~~Il~~r 60 (98)
T 2edu_A 39 ARDLRSLQRIGPKKAQLIVGWR 60 (98)
T ss_dssp HHHHHHSTTCCHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHH
Confidence 3468999999999999999876
No 37
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=55.61 E-value=9.1 Score=33.01 Aligned_cols=40 Identities=10% Similarity=0.236 Sum_probs=30.2
Q ss_pred eEeeccccccCHHHHHHHHHHcCCCc--c---ccCCCCHHHHHHHH
Q 030930 62 EYSLQYIHGVGRTRARQILVDLKMEN--K---ITKDMSEEELITIR 102 (169)
Q Consensus 62 ~~ALt~I~GIG~~~A~~Ic~~lgi~~--k---~~~~Ls~~el~~L~ 102 (169)
...|++|+|||..+|..+-+. ||.+ . ..+.|++.|..-|.
T Consensus 101 l~~l~~I~GvG~kta~~l~~~-Gi~tledL~~~~~~L~~~~~~Gl~ 145 (360)
T 2ihm_A 101 MKLFTQVFGVGVKTANRWYQE-GLRTLDELREQPQRLTQQQKAGLQ 145 (360)
T ss_dssp HHHHHTSTTCCHHHHHHHHHT-TCCSHHHHHTCCTTCCHHHHHHHH
T ss_pred HHHHhCCCCCCHHHHHHHHHc-CCCCHHHHHhcccchHHHHHHHHH
Confidence 346789999999999999888 9983 2 23678876665553
No 38
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=55.03 E-value=5.5 Score=32.12 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=22.3
Q ss_pred EEeEeec-cccccCHHHHHHHHHHcCCC
Q 030930 60 RIEYSLQ-YIHGVGRTRARQILVDLKME 86 (169)
Q Consensus 60 ~i~~ALt-~I~GIG~~~A~~Ic~~lgi~ 86 (169)
...-.|. +++|||+.+|..|+..+|.+
T Consensus 121 ~~re~Ll~~LpGVG~KTA~~vL~~~g~~ 148 (214)
T 3fhf_A 121 VAREFLVRNIKGIGYKEASHFLRNVGYD 148 (214)
T ss_dssp HHHHHHHHHSTTCCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHcCCC
Confidence 3456788 99999999999999887653
No 39
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=54.98 E-value=5 Score=32.05 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=19.9
Q ss_pred EeEeeccccccCHHHHHHHHHHc
Q 030930 61 IEYSLQYIHGVGRTRARQILVDL 83 (169)
Q Consensus 61 i~~ALt~I~GIG~~~A~~Ic~~l 83 (169)
....|.+++|||+.+|..|+..+
T Consensus 119 ~~~~L~~lpGIG~kTA~~il~~a 141 (218)
T 1pu6_A 119 TREWLLDQKGIGKESADAILCYA 141 (218)
T ss_dssp CHHHHHTSTTCCHHHHHHHHHHT
T ss_pred HHHHHHcCCCcCHHHHHHHHHHH
Confidence 45579999999999999999764
No 40
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=54.97 E-value=5 Score=32.13 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=31.8
Q ss_pred cccceeEEeCccCCCCeEEeEeeccccccCHHHHHHHHHHcCCC
Q 030930 43 LSIQCARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME 86 (169)
Q Consensus 43 i~~~~vrI~~tni~~~K~i~~ALt~I~GIG~~~A~~Ic~~lgi~ 86 (169)
++=.-.|+.|-.=...+.++.-|.+|.|||+.+|..|+..+|-+
T Consensus 53 vReda~~l~gf~~~~ek~~f~~L~~V~GIGpk~A~~iL~~f~~~ 96 (203)
T 1cuk_A 53 VREDAQLLYGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQ 96 (203)
T ss_dssp EETTEEEEEEESSHHHHHHHHHHHHSSSCCHHHHHHHHHHSCHH
T ss_pred EeehhhhhhccCCHHHHHHHHHHhcCCCcCHHHHHHHHhhCChH
Confidence 33334455555545555565678999999999999999998864
No 41
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=54.66 E-value=4.4 Score=32.88 Aligned_cols=22 Identities=23% Similarity=0.617 Sum_probs=19.3
Q ss_pred EeeccccccCHHHHHHHHHHcC
Q 030930 63 YSLQYIHGVGRTRARQILVDLK 84 (169)
Q Consensus 63 ~ALt~I~GIG~~~A~~Ic~~lg 84 (169)
-.|++++|||+.+|.+|+..+.
T Consensus 123 ~~L~~vpGIG~KtA~rIi~elk 144 (212)
T 2ztd_A 123 AALTRVPGIGKRGAERMVLELR 144 (212)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHT
T ss_pred HHHhhCCCCCHHHHHHHHHHHH
Confidence 4689999999999999997764
No 42
>1tdh_A NEI endonuclease VIII-like 1; helix two turns helix, zinc-LESS finger, hydrolase; 2.10A {Homo sapiens} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=54.35 E-value=1.9 Score=37.79 Aligned_cols=39 Identities=23% Similarity=0.386 Sum_probs=31.3
Q ss_pred CeEEeEee---ccccccCHHHHHHHHHHcCCCccc-cCCCCHH
Q 030930 58 NKRIEYSL---QYIHGVGRTRARQILVDLKMENKI-TKDMSEE 96 (169)
Q Consensus 58 ~K~i~~AL---t~I~GIG~~~A~~Ic~~lgi~~k~-~~~Ls~~ 96 (169)
+.+|..+| +-|-|||..+|..+|=.++|++.+ +++|+++
T Consensus 158 ~~~IK~~LLDQ~vVAGIGNIYadEiLF~AgIhP~r~a~~Ls~~ 200 (364)
T 1tdh_A 158 DRPICEALLDQRFFNGIGNYLRAEILYRLKIPPFEKARSVLEA 200 (364)
T ss_dssp GSBHHHHTTCTTTSTTCCHHHHHHHHHHHTCCTTSBHHHHHGG
T ss_pred cccHHHHHhcCCeeeccchHHHHHHHHHCcCCCCCChhhcCHH
Confidence 44555555 457899999999999999999665 5888886
No 43
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=54.23 E-value=6.1 Score=31.06 Aligned_cols=25 Identities=36% Similarity=0.484 Sum_probs=21.9
Q ss_pred EeEeeccccccCHHHHHHHHHHcCC
Q 030930 61 IEYSLQYIHGVGRTRARQILVDLKM 85 (169)
Q Consensus 61 i~~ALt~I~GIG~~~A~~Ic~~lgi 85 (169)
+.+.|+.|+|||...|..|++.+|=
T Consensus 160 ~~~~L~~i~gVg~~~a~~Ll~~fgs 184 (219)
T 2bgw_A 160 QLYILQSFPGIGRRTAERILERFGS 184 (219)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHHHSS
T ss_pred HHHHHhcCCCCCHHHHHHHHHHcCC
Confidence 4556899999999999999999883
No 44
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=52.78 E-value=2.9 Score=34.38 Aligned_cols=45 Identities=27% Similarity=0.293 Sum_probs=0.0
Q ss_pred CCCeEEeEeeccccccCHHHHHHHHHHcCCCccccCCCCHHHHHHH
Q 030930 56 PNNKRIEYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITI 101 (169)
Q Consensus 56 ~~~K~i~~ALt~I~GIG~~~A~~Ic~~lgi~~k~~~~Ls~~el~~L 101 (169)
-........|..|+|||..+|..+++.+|=- ..+.+-+.+|+..+
T Consensus 166 r~k~~~~s~L~~IpGIG~k~ak~Ll~~FGSl-~~i~~As~eeL~~V 210 (226)
T 3c65_A 166 RQKTMFHSVLDDIPGVGEKRKKALLNYFGSV-KKMKEATVEELQRA 210 (226)
T ss_dssp ----------------------------------------------
T ss_pred cccccccccccccCCCCHHHHHHHHHHhCCH-HHHHhCCHHHHHHc
Confidence 3344567889999999999999999998721 12233344555544
No 45
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=51.32 E-value=5.1 Score=31.63 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=19.7
Q ss_pred EeEeeccccccCHHHHHHHHHHc
Q 030930 61 IEYSLQYIHGVGRTRARQILVDL 83 (169)
Q Consensus 61 i~~ALt~I~GIG~~~A~~Ic~~l 83 (169)
....|++++|||+.+|..|+...
T Consensus 107 ~~~~L~~l~GIG~~tA~~il~~~ 129 (211)
T 2abk_A 107 DRAALEALPGVGRKTANVVLNTA 129 (211)
T ss_dssp CHHHHHHSTTCCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCChHHHHHHHHHH
Confidence 45679999999999999999764
No 46
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=50.60 E-value=3.3 Score=34.19 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=0.0
Q ss_pred eeccccccCHHHHHHHHHHcCC
Q 030930 64 SLQYIHGVGRTRARQILVDLKM 85 (169)
Q Consensus 64 ALt~I~GIG~~~A~~Ic~~lgi 85 (169)
.|..++|||..+|..|+..++.
T Consensus 49 eL~~v~GIG~ktAe~I~~~l~~ 70 (241)
T 1vq8_Y 49 ALADVSGIGNALAARIKADVGG 70 (241)
T ss_dssp ----------------------
T ss_pred HHHhccCCCHHHHHHHHHHHHH
Confidence 4567777777777777666653
No 47
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=50.08 E-value=6.7 Score=31.26 Aligned_cols=23 Identities=13% Similarity=0.209 Sum_probs=19.6
Q ss_pred EeEeeccccccCHHHHHHHHHHc
Q 030930 61 IEYSLQYIHGVGRTRARQILVDL 83 (169)
Q Consensus 61 i~~ALt~I~GIG~~~A~~Ic~~l 83 (169)
....|.+++|||+.+|..|+...
T Consensus 113 ~~~~L~~lpGIG~~TA~~il~~~ 135 (221)
T 1kea_A 113 NRKAILDLPGVGKYTCAAVMCLA 135 (221)
T ss_dssp CHHHHHTSTTCCHHHHHHHHHHT
T ss_pred HHHHHHhCCCCcHHHHHHHHHHh
Confidence 34679999999999999998764
No 48
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=49.90 E-value=6.5 Score=31.37 Aligned_cols=23 Identities=30% Similarity=0.274 Sum_probs=19.6
Q ss_pred EeEeeccccccCHHHHHHHHHHc
Q 030930 61 IEYSLQYIHGVGRTRARQILVDL 83 (169)
Q Consensus 61 i~~ALt~I~GIG~~~A~~Ic~~l 83 (169)
....|.+++|||+.+|..|+..+
T Consensus 107 ~~~~L~~lpGIG~~TA~~il~~a 129 (225)
T 1kg2_A 107 TFEEVAALPGVGRSTAGAILSLS 129 (225)
T ss_dssp SHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHHhcCCCCcHHHHHHHHHHh
Confidence 35679999999999999998754
No 49
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=49.29 E-value=7.1 Score=31.32 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=19.5
Q ss_pred EeEeeccccccCHHHHHHHHHH
Q 030930 61 IEYSLQYIHGVGRTRARQILVD 82 (169)
Q Consensus 61 i~~ALt~I~GIG~~~A~~Ic~~ 82 (169)
....|.+++|||+.+|..|+..
T Consensus 111 ~~~~L~~lpGIG~~TA~~il~~ 132 (226)
T 1orn_A 111 DRDELMKLPGVGRKTANVVVSV 132 (226)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHCCCccHHHHHHHHHH
Confidence 4678999999999999999975
No 50
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=49.20 E-value=7.5 Score=31.26 Aligned_cols=29 Identities=10% Similarity=0.274 Sum_probs=25.4
Q ss_pred HHHHcCCC-ccccCCCCHHHHHHHHHHHhh
Q 030930 79 ILVDLKME-NKITKDMSEEELITIRDEVSK 107 (169)
Q Consensus 79 Ic~~lgi~-~k~~~~Ls~~el~~L~~~l~~ 107 (169)
.+..+||+ ..++.+|+-+|+..|.+.+.+
T Consensus 217 ~l~~~~i~~~~r~e~l~~~~f~~l~~~~~~ 246 (249)
T 3ftd_A 217 LLKEAGINPDARVEQLSLEDFFKLYRLIED 246 (249)
T ss_dssp HHHHTTCCTTCCGGGCCHHHHHHHHHHHHC
T ss_pred HHHHCCCCCCCChhhCCHHHHHHHHHHHHH
Confidence 78999999 588999999999999887753
No 51
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=47.68 E-value=7.6 Score=31.27 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=20.8
Q ss_pred EEeEeeccccccCHHHHHHHHHHc
Q 030930 60 RIEYSLQYIHGVGRTRARQILVDL 83 (169)
Q Consensus 60 ~i~~ALt~I~GIG~~~A~~Ic~~l 83 (169)
...-.|++++|||+.+|..|+...
T Consensus 135 ~~~~~L~~lpGIG~kTA~~ill~a 158 (233)
T 2h56_A 135 TVIEKLTAIKGIGQWTAEMFMMFS 158 (233)
T ss_dssp HHHHHHHTSTTCCHHHHHHHHHHT
T ss_pred HHHHHHHhCCCcCHHHHHHHHHHh
Confidence 466789999999999999999763
No 52
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=47.53 E-value=7.1 Score=30.97 Aligned_cols=21 Identities=43% Similarity=0.583 Sum_probs=19.0
Q ss_pred eeccccccCHHHHHHHHHHcC
Q 030930 64 SLQYIHGVGRTRARQILVDLK 84 (169)
Q Consensus 64 ALt~I~GIG~~~A~~Ic~~lg 84 (169)
.|++++|||+.+|.+|...+.
T Consensus 108 ~L~~vpGIG~K~A~rI~~~lk 128 (191)
T 1ixr_A 108 LLTSASGVGRRLAERIALELK 128 (191)
T ss_dssp HHTTSTTCCHHHHHHHHHHHT
T ss_pred HHHhCCCCCHHHHHHHHHHHH
Confidence 589999999999999998774
No 53
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=47.48 E-value=8.3 Score=29.71 Aligned_cols=21 Identities=14% Similarity=0.126 Sum_probs=17.7
Q ss_pred EeeccccccCHHHHHHHHHHc
Q 030930 63 YSLQYIHGVGRTRARQILVDL 83 (169)
Q Consensus 63 ~ALt~I~GIG~~~A~~Ic~~l 83 (169)
-.|.+++|||+.+|..++--+
T Consensus 104 ~~L~~LpGVG~yTAdav~~F~ 124 (161)
T 4e9f_A 104 KYPIELHGIGKYGNDSYRIFC 124 (161)
T ss_dssp SSGGGSTTCCHHHHHHHHHHT
T ss_pred hhhhcCCCchHHHHHHHHHHH
Confidence 468999999999999987543
No 54
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=46.31 E-value=15 Score=30.40 Aligned_cols=73 Identities=16% Similarity=0.281 Sum_probs=48.0
Q ss_pred EEeEeeccccccCHHHHHHHHHHcCCCccccCCCCHHHHHHHHHHHhh------c-----c-cchHH-------HH----
Q 030930 60 RIEYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITIRDEVSK------Y-----M-IEGDL-------RR---- 116 (169)
Q Consensus 60 ~i~~ALt~I~GIG~~~A~~Ic~~lgi~~k~~~~Ls~~el~~L~~~l~~------~-----~-Ie~dL-------r~---- 116 (169)
.+..+|.+.+|||+++|.++.-.+= +..++++..|.+.|.+ + . .+.|+ +|
T Consensus 9 ~LI~~l~~LPGIG~KSA~RlA~hLL-------~~~~~~~~~La~al~~~~~~i~~C~~C~nlte~~~C~IC~d~~Rd~~~ 81 (228)
T 1vdd_A 9 SLIRELSRLPGIGPKSAQRLAFHLF-------EQPREDIERLASALLEAKRDLHVCPICFNITDAEKCDVCADPSRDQRT 81 (228)
T ss_dssp HHHHHHHTSTTCCHHHHHHHHHHHS-------SSCHHHHHHHHHHHHHHHHHCEECSSSCCEESSSSCHHHHCSSSCTTE
T ss_pred HHHHHHhHCCCCCHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHHHhcCeEcCCCCCCcCCCcCCCCCCCCcCCCe
Confidence 3456789999999999999975432 3356777777776643 1 0 11110 00
Q ss_pred ----HHHHHHHHHHhhhhcccCccCCC
Q 030930 117 ----FNALAIRRLKEIQCYRGIRHIQG 139 (169)
Q Consensus 117 ----~~~~nI~rL~~I~sYRG~RH~~G 139 (169)
..-.|+.-+-+.+.|+|.=|-+|
T Consensus 82 iCVVE~~~Dv~aiE~t~~y~G~YhVLg 108 (228)
T 1vdd_A 82 ICVVEEPGDVIALERSGEYRGLYHVLH 108 (228)
T ss_dssp EEEESSHHHHHHTTTTSSCCSEEEECS
T ss_pred EEEECCHHHHHHHHHhcccceEEEecC
Confidence 01356677888899999998876
No 55
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=45.83 E-value=7.8 Score=31.41 Aligned_cols=24 Identities=25% Similarity=0.146 Sum_probs=20.8
Q ss_pred EEeEeeccccccCHHHHHHHHHHc
Q 030930 60 RIEYSLQYIHGVGRTRARQILVDL 83 (169)
Q Consensus 60 ~i~~ALt~I~GIG~~~A~~Ic~~l 83 (169)
.+.-.|+.++|||+.+|..||-..
T Consensus 147 ~~~~~L~~l~GIG~~TA~~ill~a 170 (232)
T 4b21_A 147 ELMESLSKIKGVKRWTIEMYSIFT 170 (232)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred HHHHHHHhCCCcCHHHHHHHHHHh
Confidence 467789999999999999999764
No 56
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=45.58 E-value=2.8 Score=34.62 Aligned_cols=43 Identities=14% Similarity=0.213 Sum_probs=32.7
Q ss_pred CeEEeEeeccccccCHHHHHHHHHHcCCC-ccccCCCCHHHHHHHHHHHh
Q 030930 58 NKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVS 106 (169)
Q Consensus 58 ~K~i~~ALt~I~GIG~~~A~~Ic~~lgi~-~k~~~~Ls~~el~~L~~~l~ 106 (169)
.|.+..+|..+++ ..++..+||+ +.+..+|+.+|+..|.+.++
T Consensus 230 rK~l~n~L~~~~~------~~~l~~~~i~~~~R~e~Ls~~~f~~L~~~~~ 273 (279)
T 3uzu_A 230 RKMLRNTLGGYRD------LVDFDALGFDLARRAEDIGVDEYVRVAQAVA 273 (279)
T ss_dssp TSBHHHHTGGGTT------TCCTTTTTCCTTSBGGGCCHHHHHHHHHHHH
T ss_pred ChHHHHHHHhhcC------HHHHHHCCcCCCCCceeCCHHHHHHHHHHHH
Confidence 4556666665543 3457888999 67899999999999988775
No 57
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=45.57 E-value=8.3 Score=30.81 Aligned_cols=20 Identities=25% Similarity=0.682 Sum_probs=17.9
Q ss_pred eeccccccCHHHHHHHHHHc
Q 030930 64 SLQYIHGVGRTRARQILVDL 83 (169)
Q Consensus 64 ALt~I~GIG~~~A~~Ic~~l 83 (169)
.|++++|||+.+|.+|...+
T Consensus 109 ~L~~vpGIG~K~A~rI~~el 128 (203)
T 1cuk_A 109 ALVKLPGIGKKTAERLIVEM 128 (203)
T ss_dssp HHHTSTTCCHHHHHHHHHHH
T ss_pred HHhhCCCCCHHHHHHHHHHH
Confidence 58999999999999998655
No 58
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=44.94 E-value=8.2 Score=31.09 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=19.9
Q ss_pred EeEeeccccccCHHHHHHHHHHc
Q 030930 61 IEYSLQYIHGVGRTRARQILVDL 83 (169)
Q Consensus 61 i~~ALt~I~GIG~~~A~~Ic~~l 83 (169)
+.-.|+.++|||+.+|..|+-..
T Consensus 137 ~~~~L~~l~GIG~~TA~~ill~~ 159 (228)
T 3s6i_A 137 LIERLTQIKGIGRWTVEMLLIFS 159 (228)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHT
T ss_pred HHHHHHhCCCcCHHHHHHHHHHh
Confidence 46789999999999999999653
No 59
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=44.53 E-value=7.9 Score=31.06 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=20.9
Q ss_pred eEEeEeeccccccCHHHHHHHHHHc
Q 030930 59 KRIEYSLQYIHGVGRTRARQILVDL 83 (169)
Q Consensus 59 K~i~~ALt~I~GIG~~~A~~Ic~~l 83 (169)
..+...|+.++|||+.+|..|+-..
T Consensus 142 ~e~~~~L~~l~GIG~~TA~~ill~~ 166 (225)
T 2yg9_A 142 ELVIAELVQLPGIGRWTAEMFLLFA 166 (225)
T ss_dssp HHHHHHHHTSTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 3456789999999999999999763
No 60
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=44.37 E-value=32 Score=31.16 Aligned_cols=44 Identities=23% Similarity=0.320 Sum_probs=38.1
Q ss_pred ccccccCHHHHHHHHHHcCCCccc-cCCCCHHHHHHHHHHHhhcc
Q 030930 66 QYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYM 109 (169)
Q Consensus 66 t~I~GIG~~~A~~Ic~~lgi~~k~-~~~Ls~~el~~L~~~l~~~~ 109 (169)
...-++|...|..+|..+|++++. ..+|+.+|+..+.+.+..+.
T Consensus 260 ~~ft~~g~~~a~~~~~~~gl~~~~~~~~l~~~~~~~ll~a~~~~k 304 (530)
T 2zbk_B 260 NEFQSIGDTTADKILELAGLKPNKKVKNLTEEEITRLVETFKKDE 304 (530)
T ss_dssp TTSTTCCHHHHHHHHHHTTCCSSCBSSCCCHHHHHHHHHHHHHCC
T ss_pred CccccccHHHHHHHHHhhCCCCCCCcccCCHHHHHHHHHHHHhcc
Confidence 557789999999999999999655 69999999999998887553
No 61
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=44.12 E-value=8.4 Score=31.69 Aligned_cols=23 Identities=26% Similarity=0.241 Sum_probs=20.1
Q ss_pred EeEeeccccccCHHHHHHHHHHc
Q 030930 61 IEYSLQYIHGVGRTRARQILVDL 83 (169)
Q Consensus 61 i~~ALt~I~GIG~~~A~~Ic~~l 83 (169)
+.-.|++++|||+.+|..||-..
T Consensus 205 ~~~~L~~lpGIG~~TA~~ill~~ 227 (282)
T 1mpg_A 205 AMKTLQTFPGIGRWTANYFALRG 227 (282)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHhcCCCcCHHHHHHHHHHh
Confidence 46789999999999999999753
No 62
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=43.88 E-value=9.5 Score=32.50 Aligned_cols=40 Identities=15% Similarity=0.339 Sum_probs=30.3
Q ss_pred eEeeccccccCHHHHHHHHHHcCCCc--c--c-cCCCCHHHHHHHH
Q 030930 62 EYSLQYIHGVGRTRARQILVDLKMEN--K--I-TKDMSEEELITIR 102 (169)
Q Consensus 62 ~~ALt~I~GIG~~~A~~Ic~~lgi~~--k--~-~~~Ls~~el~~L~ 102 (169)
...|++|+|||..+|..+.+. ||.+ . . -+.|+..+..-|.
T Consensus 97 l~~l~~V~GiGpk~a~~l~~~-Gi~tledL~~a~~~l~~~~~~gl~ 141 (335)
T 2fmp_A 97 INFLTRVSGIGPSAARKFVDE-GIKTLEDLRKNEDKLNHHQRIGLK 141 (335)
T ss_dssp HHHHTTSTTCCHHHHHHHHHT-TCCSHHHHHTCGGGSCHHHHHHHH
T ss_pred HHHHhCCCCCCHHHHHHHHHc-CCCCHHHHHHhhhhhHHHHHHHHH
Confidence 456899999999999999988 9983 1 2 3677776655543
No 63
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=41.94 E-value=41 Score=25.74 Aligned_cols=18 Identities=17% Similarity=0.268 Sum_probs=16.1
Q ss_pred cCCCCHHHHHHHHHHHhh
Q 030930 90 TKDMSEEELITIRDEVSK 107 (169)
Q Consensus 90 ~~~Ls~~el~~L~~~l~~ 107 (169)
+..|||+|-+.|.++|..
T Consensus 14 Ls~LteeEr~~Il~VL~R 31 (153)
T 2zet_C 14 LSTLTDEEAEHVWAVVQR 31 (153)
T ss_dssp CTTSCHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHh
Confidence 589999999999999964
No 64
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=41.48 E-value=9.6 Score=31.66 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=21.3
Q ss_pred EEeEeeccccccCHHHHHHHHHH-cC
Q 030930 60 RIEYSLQYIHGVGRTRARQILVD-LK 84 (169)
Q Consensus 60 ~i~~ALt~I~GIG~~~A~~Ic~~-lg 84 (169)
.+.-.|++++|||+.+|..||-. +|
T Consensus 207 e~~~~L~~lpGIG~~TA~~ill~~lg 232 (295)
T 2jhn_A 207 EAYEYLTSFKGIGRWTAELVLSIALG 232 (295)
T ss_dssp HHHHHHHTSTTCCHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCcCHHHHHHHHHHccC
Confidence 35678999999999999999986 45
No 65
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=41.48 E-value=8.8 Score=31.96 Aligned_cols=43 Identities=14% Similarity=0.125 Sum_probs=28.3
Q ss_pred EEeEeeccccccCHHHHHHHHHH-cCCCccccCCCCHHHHHHHHHHH
Q 030930 60 RIEYSLQYIHGVGRTRARQILVD-LKMENKITKDMSEEELITIRDEV 105 (169)
Q Consensus 60 ~i~~ALt~I~GIG~~~A~~Ic~~-lgi~~k~~~~Ls~~el~~L~~~l 105 (169)
...-.|+.++|||+.+|..||-. +|-.+--. . |.-+.++...+
T Consensus 208 ~~~~~L~~lpGIG~~TA~~ill~~lg~pd~fp--v-D~~v~r~~~rl 251 (290)
T 3i0w_A 208 ECHEELKKFMGVGPQVADCIMLFSMQKYSAFP--V-DTWVKKAMMSL 251 (290)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHHHCCTTCCC--C-CHHHHHHHHHH
T ss_pred HHHHHHHhCCCcCHHHHHHHHHHhCCCCCcce--e-cHHHHHHHHHh
Confidence 45678999999999999999976 44322221 1 44555555443
No 66
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=40.16 E-value=10 Score=34.36 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=23.5
Q ss_pred EEeEeeccccccCHHHHHHHHHHcCCC
Q 030930 60 RIEYSLQYIHGVGRTRARQILVDLKME 86 (169)
Q Consensus 60 ~i~~ALt~I~GIG~~~A~~Ic~~lgi~ 86 (169)
.....|.+|+|||+.+|..|+..+|+.
T Consensus 90 ~~~~~l~~v~GvGpk~A~~~~~~lg~~ 116 (575)
T 3b0x_A 90 RGVLEVMEVPGVGPKTARLLYEGLGID 116 (575)
T ss_dssp HHHHHHHTSTTTCHHHHHHHHHTSCCC
T ss_pred HHHHHHhcCCCcCHHHHHHHHHhcCCC
Confidence 345678999999999999999998876
No 67
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=39.87 E-value=36 Score=27.46 Aligned_cols=33 Identities=18% Similarity=0.300 Sum_probs=28.3
Q ss_pred HHHHHHHcCCCccccCCCCHHHHHHHHHHHhhc
Q 030930 76 ARQILVDLKMENKITKDMSEEELITIRDEVSKY 108 (169)
Q Consensus 76 A~~Ic~~lgi~~k~~~~Ls~~el~~L~~~l~~~ 108 (169)
...++..+||+++++.+|+.+|+.+|.+.+.++
T Consensus 248 ~~~~l~~~~~~~~R~e~l~~~~f~~l~~~~~~~ 280 (285)
T 1zq9_A 248 IQQILTSTGFSDKRARSMDIDDFIRLLHGFNAE 280 (285)
T ss_dssp HHHHHHHHTCTTCBGGGCCHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCChhhCCHHHHHHHHHHHHHc
Confidence 356788999998899999999999999888654
No 68
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=39.72 E-value=9.2 Score=34.77 Aligned_cols=25 Identities=16% Similarity=0.321 Sum_probs=21.4
Q ss_pred EeEeeccccccCHHHHHHHHHHcCCC
Q 030930 61 IEYSLQYIHGVGRTRARQILVDLKME 86 (169)
Q Consensus 61 i~~ALt~I~GIG~~~A~~Ic~~lgi~ 86 (169)
....|.+|+|||+.+|..|+.. |+.
T Consensus 95 ~~~~L~~v~GVGpk~A~~i~~~-G~~ 119 (578)
T 2w9m_A 95 GLLDLLGVRGLGPKKIRSLWLA-GID 119 (578)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHT-TCC
T ss_pred HHHHHhCCCCcCHHHHHHHHHc-CCC
Confidence 4556899999999999999987 776
No 69
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=38.88 E-value=98 Score=21.63 Aligned_cols=22 Identities=9% Similarity=0.379 Sum_probs=19.2
Q ss_pred eeccccccCHHHHHHHHHHcCCC
Q 030930 64 SLQYIHGVGRTRARQILVDLKME 86 (169)
Q Consensus 64 ALt~I~GIG~~~A~~Ic~~lgi~ 86 (169)
-|+.+++||+.++..+ .++||+
T Consensus 5 ~L~~LPNiG~~~e~~L-~~vGI~ 26 (93)
T 3bqs_A 5 NLSELPNIGKVLEQDL-IKAGIK 26 (93)
T ss_dssp CGGGSTTCCHHHHHHH-HHTTCC
T ss_pred HhhcCCCCCHHHHHHH-HHcCCC
Confidence 4899999999998765 899998
No 70
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=38.45 E-value=5.1 Score=32.53 Aligned_cols=42 Identities=12% Similarity=0.230 Sum_probs=31.1
Q ss_pred CeEEeEeeccccccCHHHHHHHHHHcCCC-ccccCCCCHHHHHHHHHHH
Q 030930 58 NKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEV 105 (169)
Q Consensus 58 ~K~i~~ALt~I~GIG~~~A~~Ic~~lgi~-~k~~~~Ls~~el~~L~~~l 105 (169)
.|.+..+|..+++ ...++.+||+ +.++.+||-+|+..|.+.+
T Consensus 212 rK~l~~~L~~~~~------~~~l~~~~i~~~~R~e~Ls~~~f~~L~~~~ 254 (255)
T 3tqs_A 212 RKTVGNALKKLIN------PSQWPLLEINPQLRPQELTVEDFVKISNIL 254 (255)
T ss_dssp TSCHHHHTTTTCC------GGGTGGGTCCTTSCGGGSCHHHHHHHHHHH
T ss_pred ChHHHHHHhhhCC------HHHHHHCCcCCCCCceeCCHHHHHHHHHHh
Confidence 3555566665543 1346889999 6789999999999998765
No 71
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=38.17 E-value=11 Score=32.03 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=20.1
Q ss_pred EeEeeccccccCHHHHHHHHHHc
Q 030930 61 IEYSLQYIHGVGRTRARQILVDL 83 (169)
Q Consensus 61 i~~ALt~I~GIG~~~A~~Ic~~l 83 (169)
..-.|.+++|||+.+|..|+..+
T Consensus 116 ~~~~L~~l~GIG~~tA~~il~~~ 138 (369)
T 3fsp_A 116 DPDEFSRLKGVGPYTVGAVLSLA 138 (369)
T ss_dssp SHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHHhcCCCcCHHHHHHHHHHH
Confidence 46779999999999999999774
No 72
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=36.50 E-value=13 Score=32.09 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=20.8
Q ss_pred EEeEeeccccccCHHHHHHHHHHc
Q 030930 60 RIEYSLQYIHGVGRTRARQILVDL 83 (169)
Q Consensus 60 ~i~~ALt~I~GIG~~~A~~Ic~~l 83 (169)
...-.|..++|||+.+|..||...
T Consensus 250 ~~~~~L~~LpGIGp~TA~~ill~a 273 (360)
T 2xhi_A 250 EAHKALCILPGVGTCVADKICLMA 273 (360)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHh
Confidence 466789999999999999999763
No 73
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ...
Probab=35.81 E-value=26 Score=30.54 Aligned_cols=38 Identities=16% Similarity=0.236 Sum_probs=29.3
Q ss_pred eeccccccCHHHHHHHHHHcCCCc-cccCCCCHHHHHHH
Q 030930 64 SLQYIHGVGRTRARQILVDLKMEN-KITKDMSEEELITI 101 (169)
Q Consensus 64 ALt~I~GIG~~~A~~Ic~~lgi~~-k~~~~Ls~~el~~L 101 (169)
-+.++.|||+.++..++..+||.+ .-+-.++.+++.+.
T Consensus 254 pv~~l~GiG~~~~~~lL~~lGI~TigdLa~~~~~~L~~~ 292 (435)
T 4ecq_A 254 PIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSH 292 (435)
T ss_dssp BGGGSTTCSSHHHHHHHHHHTCCBGGGGGGSCHHHHHHH
T ss_pred CHHHhcCCCHHHHHHHHHHcCCCcHHHHhhCCHHHHHHH
Confidence 467899999999999999999984 33456666666543
No 74
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=35.58 E-value=14 Score=32.13 Aligned_cols=39 Identities=15% Similarity=0.156 Sum_probs=28.2
Q ss_pred eEeeccccccCHHHHHHHHHHcCCCc--cc----cCCCCHHHHHHH
Q 030930 62 EYSLQYIHGVGRTRARQILVDLKMEN--KI----TKDMSEEELITI 101 (169)
Q Consensus 62 ~~ALt~I~GIG~~~A~~Ic~~lgi~~--k~----~~~Ls~~el~~L 101 (169)
...|++|+|||..+|..+.+. ||.+ .. ...|++.|..-|
T Consensus 120 l~~l~~I~GvGpk~a~~ly~~-Gi~tledL~~~~g~kl~~~q~~Gl 164 (381)
T 1jms_A 120 FKLFTSVFGVGLKTAEKWFRM-GFRTLSKIQSDKSLRFTQMQKAGF 164 (381)
T ss_dssp HHHHHTSTTCCHHHHHHHHHT-TCCSHHHHHHCSSCCCCHHHHHHH
T ss_pred HHHHHccCCCCHHHHHHHHHc-CCCcHHHHHhCcccchHHHHHHHH
Confidence 346789999999999999888 9983 21 135666555544
No 75
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=35.30 E-value=14 Score=31.42 Aligned_cols=27 Identities=15% Similarity=0.174 Sum_probs=21.8
Q ss_pred EEeEeeccccccCHHHHHHHHHHcCCCc
Q 030930 60 RIEYSLQYIHGVGRTRARQILVDLKMEN 87 (169)
Q Consensus 60 ~i~~ALt~I~GIG~~~A~~Ic~~lgi~~ 87 (169)
++.--|++|+|||..+|..+-+. ||.+
T Consensus 93 p~l~ll~~v~GiG~k~a~~l~~~-Gi~t 119 (335)
T 2bcq_A 93 PVLELFSNIWGAGTKTAQMWYQQ-GFRS 119 (335)
T ss_dssp HHHHHHHTSTTCCHHHHHHHHHT-TCCS
T ss_pred HHHHHHhcCCCcCHHHHHHHHHc-CCCC
Confidence 34444579999999999999887 9983
No 76
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=31.86 E-value=15 Score=33.15 Aligned_cols=43 Identities=19% Similarity=0.304 Sum_probs=31.4
Q ss_pred eccccccCHHHHHHHHHHcCCCccccCCCCHHHHHHHHHHHhh
Q 030930 65 LQYIHGVGRTRARQILVDLKMENKITKDMSEEELITIRDEVSK 107 (169)
Q Consensus 65 Lt~I~GIG~~~A~~Ic~~lgi~~k~~~~Ls~~el~~L~~~l~~ 107 (169)
|++++|||.++|.+|+..+........-+.-+|.+.+.+.|.+
T Consensus 130 l~~~~GiG~k~a~~i~~~l~~~~~~~~r~~~~e~~~~~~~i~~ 172 (575)
T 3b0x_A 130 LTRLKGFGPKRAERIREGLALAQAAGKRRPLGAVLSLARSLLE 172 (575)
T ss_dssp GGGSTTCCHHHHHHHHHHHHHHHHHTCCEEHHHHHHHHHHHHH
T ss_pred cccCCCCCccHHHHHHHHHHHHHHhccceeHHHHHHHHHHHHH
Confidence 7899999999999997666544444455666777777666543
No 77
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=31.81 E-value=17 Score=32.94 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=19.2
Q ss_pred cccccCHHHHHHHHHHcCCCccccCCCCHHHHHHHHHHH
Q 030930 67 YIHGVGRTRARQILVDLKMENKITKDMSEEELITIRDEV 105 (169)
Q Consensus 67 ~I~GIG~~~A~~Ic~~lgi~~k~~~~Ls~~el~~L~~~l 105 (169)
+++|||.+++.+|..-+.+..+...-+.-+|.+.+.+.|
T Consensus 135 ~~~GiG~Ktaq~I~~~l~~~~~~~~r~~~~e~~~~~~~i 173 (578)
T 2w9m_A 135 GLKGFGAKSAATILENVVFLFEARQRQSLRAGLAVAEEL 173 (578)
T ss_dssp TSTTCCHHHHHHHHHHHHHHHHHCSSEEHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHhhcCCeeHHHHHHHHHHH
Confidence 355666666555554444443333444444555554444
No 78
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=31.35 E-value=22 Score=27.96 Aligned_cols=31 Identities=16% Similarity=0.184 Sum_probs=26.5
Q ss_pred HHHHHcCCC-ccccCCCCHHHHHHHHHHHhhc
Q 030930 78 QILVDLKME-NKITKDMSEEELITIRDEVSKY 108 (169)
Q Consensus 78 ~Ic~~lgi~-~k~~~~Ls~~el~~L~~~l~~~ 108 (169)
.++..+|++ ..++.+||-+|+..|.+.+++|
T Consensus 211 ~~~~~~~~~~~~r~e~l~~~~~~~l~~~~~~~ 242 (244)
T 1qam_A 211 QFNNSLKHAGIDDLNNISFEQFLSLFNSYKLF 242 (244)
T ss_dssp HHHHHHHHHTCSCTTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCceeCCHHHHHHHHHHHHHh
Confidence 467889999 6789999999999999888765
No 79
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=31.24 E-value=51 Score=28.17 Aligned_cols=50 Identities=12% Similarity=0.233 Sum_probs=38.1
Q ss_pred CeEEeEeeccccccCHHHHHHHHHHcCCCccccCCCCHHHHHHHHHHHhhcc
Q 030930 58 NKRIEYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITIRDEVSKYM 109 (169)
Q Consensus 58 ~K~i~~ALt~I~GIG~~~A~~Ic~~lgi~~k~~~~Ls~~el~~L~~~l~~~~ 109 (169)
++.+...|.. .+..+.+..+++.+++.++...+|+++|+++|.+.|.+|.
T Consensus 299 ~~~~~~~l~~--~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 348 (417)
T 3v76_A 299 RQAVQTALAD--ILPRRLAQFFADEAKLTGRMLADLSDKTIDALASSIQVWA 348 (417)
T ss_dssp SSBHHHHHTT--TSCHHHHHHHHHHTTCTTCBGGGCCHHHHHHHHHHHHSEE
T ss_pred hhhHHHHHHH--HhhHHHHHHHHHhcCCCCCchhhCCHHHHHHHHHHhcCCE
Confidence 3444444443 3778899999999998555679999999999999998753
No 80
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=29.76 E-value=18 Score=30.49 Aligned_cols=22 Identities=36% Similarity=0.345 Sum_probs=18.5
Q ss_pred eEeecc-ccccCHHHHHHHHHHc
Q 030930 62 EYSLQY-IHGVGRTRARQILVDL 83 (169)
Q Consensus 62 ~~ALt~-I~GIG~~~A~~Ic~~l 83 (169)
...|.+ ++|||+.+|..|+..+
T Consensus 127 ~~~Ll~~LpGIG~kTA~~iL~~a 149 (287)
T 3n5n_X 127 AETLQQLLPGVGRYTAGAIASIA 149 (287)
T ss_dssp HHHHHHHSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHh
Confidence 567877 9999999999998653
No 81
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=29.50 E-value=25 Score=28.62 Aligned_cols=20 Identities=25% Similarity=0.471 Sum_probs=17.3
Q ss_pred EeeccccccCHHHHHHHHHH
Q 030930 63 YSLQYIHGVGRTRARQILVD 82 (169)
Q Consensus 63 ~ALt~I~GIG~~~A~~Ic~~ 82 (169)
-.|..++|||..+|.+|..-
T Consensus 132 ~eL~~LpGIG~k~A~~IIey 151 (205)
T 2i5h_A 132 HQLELLPGVGKKMMWAIIEE 151 (205)
T ss_dssp BGGGGSTTCCHHHHHHHHHH
T ss_pred HHHhcCCCcCHHHHHHHHHH
Confidence 35889999999999999853
No 82
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=28.64 E-value=13 Score=30.91 Aligned_cols=51 Identities=18% Similarity=0.352 Sum_probs=38.9
Q ss_pred CCeEEeEeecccc---ccCHHHHHHHHHHc-----CCC---ccccCCCCHHHHHHHHHHHhh
Q 030930 57 NNKRIEYSLQYIH---GVGRTRARQILVDL-----KME---NKITKDMSEEELITIRDEVSK 107 (169)
Q Consensus 57 ~~K~i~~ALt~I~---GIG~~~A~~Ic~~l-----gi~---~k~~~~Ls~~el~~L~~~l~~ 107 (169)
..|.+..+|.... |+.+..+..++..+ |++ ++++.+|+-+|+..|.+.+.+
T Consensus 226 rrK~l~n~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~R~e~Ls~~~f~~L~~~~~~ 287 (295)
T 3gru_A 226 RNKSVRKALIDSSKELNYNKDEMKKILEDFLNTNSEIKNLINEKVFKLSVKDIVNLSNEFYR 287 (295)
T ss_dssp TTSBHHHHHHHTGGGGTCCHHHHHHHHHHHHTTCHHHHHHHTSBGGGSCHHHHHHHHHHHHH
T ss_pred CchHHHHHHhhhhccccCCHHHHHHHHHHhhhcccCCCccccCChhhCCHHHHHHHHHHHHH
Confidence 3566777776653 45577788888888 777 467899999999999888753
No 83
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=28.20 E-value=23 Score=32.64 Aligned_cols=40 Identities=23% Similarity=0.316 Sum_probs=29.0
Q ss_pred eEeeccccccCHHHHHHHHHHcCCCcc---------ccCCCCHHHHHHH
Q 030930 62 EYSLQYIHGVGRTRARQILVDLKMENK---------ITKDMSEEELITI 101 (169)
Q Consensus 62 ~~ALt~I~GIG~~~A~~Ic~~lgi~~k---------~~~~Ls~~el~~L 101 (169)
.+-|++|.|||+-+|..+++++|--.. +..-+.+.|+..|
T Consensus 467 eamLtAIaGIGp~tAeRLLEkFGSVe~Vm~AteDELRedGIGekqarrI 515 (685)
T 4gfj_A 467 YASLISIRGIDRERAERLLKKYGGYSKVREAGVEELREDGLTDAQIREL 515 (685)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHTSHHHHHHSCHHHHHHTTCCHHHHHHH
T ss_pred eeeeeccCCCCHHHHHHHHHHhcCHHHHHhCCHHHHHHccccHHHHHHH
Confidence 567899999999999999999884321 2244555555555
No 84
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=26.53 E-value=82 Score=25.50 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=28.1
Q ss_pred HHHHHHHcCCCccccCCCCHHHHHHHHHHHhhc
Q 030930 76 ARQILVDLKMENKITKDMSEEELITIRDEVSKY 108 (169)
Q Consensus 76 A~~Ic~~lgi~~k~~~~Ls~~el~~L~~~l~~~ 108 (169)
...+++.+|++++++.+|+.+|+.+|.+.++++
T Consensus 260 ~~~~l~~~~~~~~R~e~l~~~~f~~l~~~~~~~ 292 (299)
T 2h1r_A 260 CLDVLEHLDMCEKRSINLDENDFLKLLLEFNKK 292 (299)
T ss_dssp HHHHHHHTTCTTCBGGGCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCCChhhCCHHHHHHHHHHHHhC
Confidence 355678899998899999999999999988764
No 85
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=25.85 E-value=34 Score=28.77 Aligned_cols=18 Identities=22% Similarity=0.516 Sum_probs=16.6
Q ss_pred cccccCHHHHHHHHHHcC
Q 030930 67 YIHGVGRTRARQILVDLK 84 (169)
Q Consensus 67 ~I~GIG~~~A~~Ic~~lg 84 (169)
.|+|||..+|..+++..|
T Consensus 207 GVpGIG~KTA~kLL~~~g 224 (290)
T 1exn_A 207 GVEGIGAKRGYNIIREFG 224 (290)
T ss_dssp CCTTCCHHHHHHHHHHHC
T ss_pred CCCcCCHhHHHHHHHHcC
Confidence 489999999999999987
No 86
>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}
Probab=24.60 E-value=47 Score=20.82 Aligned_cols=17 Identities=18% Similarity=0.165 Sum_probs=15.0
Q ss_pred CCCCHHHHHHHHHHHhh
Q 030930 91 KDMSEEELITIRDEVSK 107 (169)
Q Consensus 91 ~~Ls~~el~~L~~~l~~ 107 (169)
..||++|+..|..+|..
T Consensus 61 ~~Ls~~ei~~l~~yl~~ 77 (79)
T 2d0s_A 61 PQVAEADIEKIVRWVLT 77 (79)
T ss_dssp TTSCHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 58999999999999864
No 87
>1kx2_A Mono-heme C-type cytochrome SCYA; HAEM protein, ferrocytochrome, electron transport, GRAM negative, bacteria; HET: HEC; NMR {Shewanella putrefaciens} SCOP: a.3.1.1 PDB: 1kx7_A*
Probab=24.55 E-value=47 Score=21.28 Aligned_cols=17 Identities=24% Similarity=0.305 Sum_probs=14.8
Q ss_pred CCCCHHHHHHHHHHHhh
Q 030930 91 KDMSEEELITIRDEVSK 107 (169)
Q Consensus 91 ~~Ls~~el~~L~~~l~~ 107 (169)
..|||+|+..|..+|..
T Consensus 63 ~~Lsd~ei~~l~~Yi~~ 79 (81)
T 1kx2_A 63 TDCTDEDYKAAIEFMSK 79 (81)
T ss_dssp SSCCHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 48999999999998854
No 88
>1gks_A Cytochrome C551; halophilic purple phototrophic bacterium, electron transport; HET: HEM; NMR {Halorhodospira halophila} SCOP: a.3.1.1
Probab=24.52 E-value=51 Score=20.92 Aligned_cols=18 Identities=11% Similarity=0.163 Sum_probs=15.3
Q ss_pred cCCCCHHHHHHHHHHHhh
Q 030930 90 TKDMSEEELITIRDEVSK 107 (169)
Q Consensus 90 ~~~Ls~~el~~L~~~l~~ 107 (169)
.+.|||+|+..|..+|..
T Consensus 59 ~~~Lsd~ei~~l~~yi~~ 76 (78)
T 1gks_A 59 DGRADREDLVKAIEYMLS 76 (78)
T ss_dssp BTTBCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 468999999999998853
No 89
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=24.43 E-value=77 Score=23.58 Aligned_cols=18 Identities=17% Similarity=0.403 Sum_probs=15.2
Q ss_pred cCCCCHHHHHHHHHHHhh
Q 030930 90 TKDMSEEELITIRDEVSK 107 (169)
Q Consensus 90 ~~~Ls~~el~~L~~~l~~ 107 (169)
...|||+|.+.|.+.|..
T Consensus 7 ls~LteeE~~~Il~Vl~R 24 (134)
T 1zbd_B 7 QEELTDEEKEIINRVIAR 24 (134)
T ss_dssp -CCCCSSHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHhh
Confidence 578999999999999964
No 90
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=24.25 E-value=33 Score=23.82 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=16.5
Q ss_pred eccccccCHHHHHHHHHHcC
Q 030930 65 LQYIHGVGRTRARQILVDLK 84 (169)
Q Consensus 65 Lt~I~GIG~~~A~~Ic~~lg 84 (169)
+..+.|||..++..|-++|.
T Consensus 60 ~~~L~giG~ki~~~L~e~L~ 79 (87)
T 2kp7_A 60 AKILQHFGDRLCRMLDEKLK 79 (87)
T ss_dssp HHTCTTTCHHHHHHHHHHHH
T ss_pred HHHhhcccHHHHHHHHHHHH
Confidence 57899999999998877653
No 91
>3ph2_B Cytochrome C6; photosynthesis, cytochrome F, photosys thylakoid; HET: HEM; 1.40A {Phormidium laminosum} SCOP: a.3.1.1 PDB: 2v08_A* 1c6s_A*
Probab=24.19 E-value=49 Score=20.71 Aligned_cols=18 Identities=6% Similarity=0.261 Sum_probs=15.5
Q ss_pred cCCCCHHHHHHHHHHHhh
Q 030930 90 TKDMSEEELITIRDEVSK 107 (169)
Q Consensus 90 ~~~Ls~~el~~L~~~l~~ 107 (169)
.+.||++|+..|..+|..
T Consensus 63 ~~~ls~~ei~~l~~yl~~ 80 (86)
T 3ph2_B 63 KGRLTDDQIAAVAAYVLD 80 (86)
T ss_dssp TTTSCHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHH
Confidence 468999999999999854
No 92
>1cc5_A Cytochrome C5; electron transport (heme protein); HET: HEM; 2.50A {Azotobacter vinelandii} SCOP: a.3.1.1
Probab=24.17 E-value=48 Score=21.61 Aligned_cols=15 Identities=33% Similarity=0.432 Sum_probs=13.6
Q ss_pred CCCHHHHHHHHHHHh
Q 030930 92 DMSEEELITIRDEVS 106 (169)
Q Consensus 92 ~Ls~~el~~L~~~l~ 106 (169)
.|||+|+..|..+|.
T Consensus 67 ~Lsd~ei~~v~~yi~ 81 (83)
T 1cc5_A 67 DCSDDELKAAIGKMS 81 (83)
T ss_dssp SCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 699999999999885
No 93
>2i0x_A Hypothetical protein PF1117; PSI, STRU genomics, southeast collaboratory for structural genomics, structure initiative, secsg; 2.70A {Pyrococcus furiosus} SCOP: d.58.58.1
Probab=24.07 E-value=36 Score=23.28 Aligned_cols=36 Identities=14% Similarity=0.163 Sum_probs=28.1
Q ss_pred HHHHHHHHHHcCCC--cccc-CCCCHHHHHHHHHHHhhc
Q 030930 73 RTRARQILVDLKME--NKIT-KDMSEEELITIRDEVSKY 108 (169)
Q Consensus 73 ~~~A~~Ic~~lgi~--~k~~-~~Ls~~el~~L~~~l~~~ 108 (169)
+.....+|+..|.. ++.. ++||+.|+..|...|.+.
T Consensus 14 ~~kv~k~l~~yg~rvQ~SVFeg~lt~~~~~~L~~~l~~~ 52 (85)
T 2i0x_A 14 VNKVKKFLRMHLNWVQNSVFEGEVTLAEFERIKEGLKKI 52 (85)
T ss_dssp HHHHHHHHTTTSEEEETTEEEEECCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCcccceeEEEEECCHHHHHHHHHHHHHh
Confidence 45667788888866 3444 999999999999988764
No 94
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=23.69 E-value=37 Score=28.87 Aligned_cols=18 Identities=33% Similarity=0.558 Sum_probs=16.3
Q ss_pred cccccCHHHHHHHHHHcC
Q 030930 67 YIHGVGRTRARQILVDLK 84 (169)
Q Consensus 67 ~I~GIG~~~A~~Ic~~lg 84 (169)
.|+|||..+|..+++..|
T Consensus 236 gipGiG~KtA~kll~~~g 253 (341)
T 3q8k_A 236 SIRGIGPKRAVDLIQKHK 253 (341)
T ss_dssp CCTTCCHHHHHHHHHHHC
T ss_pred CCCCccHHHHHHHHHHcC
Confidence 479999999999999877
No 95
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=23.29 E-value=70 Score=26.62 Aligned_cols=36 Identities=17% Similarity=0.298 Sum_probs=26.6
Q ss_pred eccccccCHHHHHHHHHHcCCCc-cccCCCCHHHHHHH
Q 030930 65 LQYIHGVGRTRARQILVDLKMEN-KITKDMSEEELITI 101 (169)
Q Consensus 65 Lt~I~GIG~~~A~~Ic~~lgi~~-k~~~~Ls~~el~~L 101 (169)
++.++|||+.++..+ ..+||.+ .-.-.++.+++.+.
T Consensus 180 v~~l~GiG~~~~~~L-~~~Gi~t~~dL~~~~~~~L~~~ 216 (352)
T 1jx4_A 180 IADVPGIGNITAEKL-KKLGINKLVDTLSIEFDKLKGM 216 (352)
T ss_dssp GGGSTTCCHHHHHHH-HTTTCCBGGGGGSSCHHHHHHH
T ss_pred CCcccccCHHHHHHH-HHcCCchHHHHHCCCHHHHHHh
Confidence 689999999988875 8899984 23456666666554
No 96
>2zxy_A Cytochrome C552, cytochrome C555; heme protein, oxygen binding, transport protein; HET: HEC; 1.15A {Aquifex aeolicus}
Probab=22.79 E-value=47 Score=20.79 Aligned_cols=18 Identities=28% Similarity=0.370 Sum_probs=15.3
Q ss_pred cCCCCHHHHHHHHHHHhh
Q 030930 90 TKDMSEEELITIRDEVSK 107 (169)
Q Consensus 90 ~~~Ls~~el~~L~~~l~~ 107 (169)
...||++|+..|..+|..
T Consensus 68 ~~~ls~~ei~~l~~yl~s 85 (87)
T 2zxy_A 68 LKGLSDAELKALADFILS 85 (87)
T ss_dssp GGGCCHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHHHHh
Confidence 358999999999999864
No 97
>3bc1_B Synaptotagmin-like protein 2; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Homo sapiens}
Probab=22.50 E-value=65 Score=21.17 Aligned_cols=33 Identities=21% Similarity=0.241 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 030930 91 KDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLK 126 (169)
Q Consensus 91 ~~Ls~~el~~L~~~l~~~~Ie~dLr~~~~~nI~rL~ 126 (169)
+.|+++|-+.|.+.|.. +.+|+..-.+-|.+|+
T Consensus 1 ~~l~e~E~~~IL~VL~R---D~~lr~~ee~RIrkLk 33 (59)
T 3bc1_B 1 GSPEFEEQEAIMKVLQR---DAALKRAEEERVRHLP 33 (59)
T ss_dssp CCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHGG
T ss_pred CCCCHHHHHHHHHHHhh---HHHHhhChHHHHHHHH
Confidence 45788888889888865 4566655555555544
No 98
>3dr0_A Cytochrome C6; photosynthesis, cyanobacteria, electron transfer electron transport, heme, iron, metal-binding, thylakoid; HET: HEM; 1.23A {Synechococcus SP}
Probab=22.33 E-value=51 Score=20.84 Aligned_cols=18 Identities=6% Similarity=0.272 Sum_probs=15.6
Q ss_pred cCCCCHHHHHHHHHHHhh
Q 030930 90 TKDMSEEELITIRDEVSK 107 (169)
Q Consensus 90 ~~~Ls~~el~~L~~~l~~ 107 (169)
.+.||++|+..|..+|..
T Consensus 69 ~~~ls~~ei~~l~~yl~~ 86 (93)
T 3dr0_A 69 GGRLSDADIANVAAYIAD 86 (93)
T ss_dssp BTTBCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 478999999999999864
No 99
>1ayg_A Cytochrome C-552; electron transport, porphyrin, ferrous iron; HET: HEC; NMR {Hydrogenobacter thermophilus} SCOP: a.3.1.1 PDB: 1ynr_A* 2ai5_A*
Probab=22.31 E-value=56 Score=20.59 Aligned_cols=16 Identities=6% Similarity=0.173 Sum_probs=14.4
Q ss_pred CCCHHHHHHHHHHHhh
Q 030930 92 DMSEEELITIRDEVSK 107 (169)
Q Consensus 92 ~Ls~~el~~L~~~l~~ 107 (169)
.|||+|+..|..+|..
T Consensus 63 ~Lsd~ei~~l~~yl~~ 78 (80)
T 1ayg_A 63 NVTDAEAKQLAQWILS 78 (80)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 8999999999999864
No 100
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=22.21 E-value=22 Score=30.59 Aligned_cols=21 Identities=24% Similarity=0.180 Sum_probs=19.1
Q ss_pred eeccccccCHHHHHHHHHHcC
Q 030930 64 SLQYIHGVGRTRARQILVDLK 84 (169)
Q Consensus 64 ALt~I~GIG~~~A~~Ic~~lg 84 (169)
.|+.++|||..+|..|-+-+.
T Consensus 62 ~l~~lpGIG~~~A~kI~E~l~ 82 (360)
T 2ihm_A 62 QLHGLPYFGEHSTRVIQELLE 82 (360)
T ss_dssp GGTTCTTCCHHHHHHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHH
Confidence 399999999999999998876
No 101
>1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix, fidelity, processivity, transferase; 2.30A {Sulfolobus solfataricus} SCOP: e.8.1.7
Probab=22.16 E-value=53 Score=25.95 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=18.9
Q ss_pred eeccccccCHHHHHHHHHHcCCCc
Q 030930 64 SLQYIHGVGRTRARQILVDLKMEN 87 (169)
Q Consensus 64 ALt~I~GIG~~~A~~Ic~~lgi~~ 87 (169)
-+..++|||+.++.. +.++||.+
T Consensus 185 pv~~l~giG~~~~~~-L~~~Gi~T 207 (221)
T 1im4_A 185 DIDEIPGIGSVLARR-LNELGIQK 207 (221)
T ss_dssp BGGGSTTCCHHHHHH-HHHTTCCB
T ss_pred CcccccCCCHHHHHH-HHHcCCCc
Confidence 368899999998887 48899873
No 102
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=22.05 E-value=29 Score=29.51 Aligned_cols=31 Identities=23% Similarity=0.270 Sum_probs=24.5
Q ss_pred eeccccccCHHHHHHHHHHcCCC-ccccCCCC
Q 030930 64 SLQYIHGVGRTRARQILVDLKME-NKITKDMS 94 (169)
Q Consensus 64 ALt~I~GIG~~~A~~Ic~~lgi~-~k~~~~Ls 94 (169)
.|+.++|||..+|..|.+-+.=. .....+|.
T Consensus 58 ~l~~lpGIG~~~A~kI~E~l~tG~~~~le~l~ 89 (335)
T 2bcq_A 58 EACSIPGIGKRMAEKIIEILESGHLRKLDHIS 89 (335)
T ss_dssp HHHTSTTCCHHHHHHHHHHHHSSSCGGGGGCC
T ss_pred HHhcCCCccHHHHHHHHHHHHcCCchHHHHHh
Confidence 48999999999999999987744 44456664
No 103
>1c75_A Cytochrome C-553; heme, bacillus pasteurii, AB initio, ATOM resolution, electron transport; HET: HEM; 0.97A {Sporosarcina pasteurii} SCOP: a.3.1.1 PDB: 1b7v_A* 1k3g_A* 1k3h_A* 1n9c_A*
Probab=22.03 E-value=59 Score=20.00 Aligned_cols=17 Identities=6% Similarity=-0.075 Sum_probs=15.1
Q ss_pred CCCCHHHHHHHHHHHhh
Q 030930 91 KDMSEEELITIRDEVSK 107 (169)
Q Consensus 91 ~~Ls~~el~~L~~~l~~ 107 (169)
..||++|+..|..+|..
T Consensus 53 ~~ls~~ei~~l~~yl~~ 69 (71)
T 1c75_A 53 GIAKGAEAEAVAAWLAE 69 (71)
T ss_dssp CSSCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 78999999999998864
No 104
>2exv_A Cytochrome C-551; alpha helix, heme C, electron transport; HET: HEC; 1.86A {Pseudomonas aeruginosa} PDB: 2pac_A* 351c_A* 451c_A* 1dvv_A*
Probab=21.99 E-value=63 Score=20.16 Aligned_cols=16 Identities=25% Similarity=0.246 Sum_probs=14.4
Q ss_pred CCCHHHHHHHHHHHhh
Q 030930 92 DMSEEELITIRDEVSK 107 (169)
Q Consensus 92 ~Ls~~el~~L~~~l~~ 107 (169)
.||++|+..|..+|..
T Consensus 65 ~ls~~ei~~l~~yl~~ 80 (82)
T 2exv_A 65 AVSDDEAQTLAKWVLS 80 (82)
T ss_dssp CCCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHh
Confidence 8999999999999864
No 105
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=21.77 E-value=44 Score=27.96 Aligned_cols=18 Identities=22% Similarity=0.322 Sum_probs=16.8
Q ss_pred cccccCHHHHHHHHHHcC
Q 030930 67 YIHGVGRTRARQILVDLK 84 (169)
Q Consensus 67 ~I~GIG~~~A~~Ic~~lg 84 (169)
.|+|||..+|..+++..|
T Consensus 239 Gv~GiG~KtA~kLl~~~g 256 (336)
T 1rxw_A 239 GVKGVGVKKALNYIKTYG 256 (336)
T ss_dssp CCTTCCHHHHHHHHHHHS
T ss_pred CCCCcCHHHHHHHHHHcC
Confidence 689999999999999987
No 106
>3dmi_A Cytochrome C6; electron transport, transit peptide; HET: HEM; 1.50A {Phaeodactylum tricornutum} SCOP: a.3.1.1
Probab=21.73 E-value=59 Score=20.50 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=15.4
Q ss_pred cCCCCHHHHHHHHHHHhh
Q 030930 90 TKDMSEEELITIRDEVSK 107 (169)
Q Consensus 90 ~~~Ls~~el~~L~~~l~~ 107 (169)
.+.||++|+..|..+|..
T Consensus 64 ~~~ls~~ei~~l~~yl~~ 81 (88)
T 3dmi_A 64 GGRLSDEEIANVAAYVLA 81 (88)
T ss_dssp TTTSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 457999999999999864
No 107
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=21.72 E-value=58 Score=27.20 Aligned_cols=37 Identities=14% Similarity=0.186 Sum_probs=27.0
Q ss_pred eeccccccCHHHHHHHHHHcCCCc-cccCCCCHHHHHHH
Q 030930 64 SLQYIHGVGRTRARQILVDLKMEN-KITKDMSEEELITI 101 (169)
Q Consensus 64 ALt~I~GIG~~~A~~Ic~~lgi~~-k~~~~Ls~~el~~L 101 (169)
-+.++.|||+.++..+ ..+||.+ .-...++.+++.+.
T Consensus 179 pv~~l~GiG~~~~~~L-~~~GI~Ti~dL~~~~~~~L~~~ 216 (356)
T 4dez_A 179 PPDALWGVGPKTTKKL-AAMGITTVADLAVTDPSVLTTA 216 (356)
T ss_dssp CGGGSTTCCHHHHHHH-HHTTCCSHHHHHTSCHHHHHHH
T ss_pred cHHHHcCCchhHHHHH-HHcCCCeecccccCCHHHHHHH
Confidence 3578999999999875 7899984 23456667666554
No 108
>1a56_A C-551, ferricytochrome C-552; hemoprotein, prokaryotic electron transport; HET: HEC; NMR {Nitrosomonas europaea} SCOP: a.3.1.1 PDB: 1a8c_A*
Probab=21.65 E-value=46 Score=20.98 Aligned_cols=17 Identities=12% Similarity=0.212 Sum_probs=14.9
Q ss_pred CCCCHHHHHHHHHHHhh
Q 030930 91 KDMSEEELITIRDEVSK 107 (169)
Q Consensus 91 ~~Ls~~el~~L~~~l~~ 107 (169)
..||++|+..|..+|..
T Consensus 63 ~~Ls~~ei~~l~~yl~~ 79 (81)
T 1a56_A 63 VNVSDADAKALADWILT 79 (81)
T ss_dssp CSSSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 58999999999998854
No 109
>1ls9_A Cytochrome C6; omega loop, antiparallel beta-sheet, protoporphyrin IX containing Fe, heme, HAEM, electron transport; HET: HEM; 1.30A {Cladophora glomerata} SCOP: a.3.1.1
Probab=21.55 E-value=59 Score=20.84 Aligned_cols=18 Identities=11% Similarity=0.338 Sum_probs=15.4
Q ss_pred cCCCCHHHHHHHHHHHhh
Q 030930 90 TKDMSEEELITIRDEVSK 107 (169)
Q Consensus 90 ~~~Ls~~el~~L~~~l~~ 107 (169)
.+.||++|+..|..+|..
T Consensus 67 ~~~ls~~ei~~l~~yl~~ 84 (91)
T 1ls9_A 67 ADRLDEDDIEAVSNYVYD 84 (91)
T ss_dssp TTTSCHHHHHHHHHHHHH
T ss_pred hhhCCHHHHHHHHHHHHH
Confidence 368999999999999864
No 110
>1c53_A Cytochrome C553; electron transport; HET: HEM; 1.80A {Desulfovibrio vulgaris str} SCOP: a.3.1.1 PDB: 1dvh_A* 1dwl_B* 1e08_E* 2dvh_A*
Probab=21.52 E-value=50 Score=20.82 Aligned_cols=17 Identities=41% Similarity=0.530 Sum_probs=14.7
Q ss_pred CCCCHHHHHHHHHHHhh
Q 030930 91 KDMSEEELITIRDEVSK 107 (169)
Q Consensus 91 ~~Ls~~el~~L~~~l~~ 107 (169)
+.|||+|+..|..+|..
T Consensus 62 ~~Ls~~ei~~l~~Yl~s 78 (79)
T 1c53_A 62 KRYSDEEMKAMADYMSK 78 (79)
T ss_pred hhCCHHHHHHHHHHHHh
Confidence 67999999999998853
No 111
>1c6r_A Cytochrome C6; electron transport protein, reduced state, photosynthesis; HET: HEM; 1.90A {Scenedesmus obliquus} SCOP: a.3.1.1 PDB: 1c6o_A* 1a2s_A* 1ced_A* 1ctj_A*
Probab=21.51 E-value=59 Score=20.58 Aligned_cols=18 Identities=11% Similarity=0.313 Sum_probs=15.4
Q ss_pred cCCCCHHHHHHHHHHHhh
Q 030930 90 TKDMSEEELITIRDEVSK 107 (169)
Q Consensus 90 ~~~Ls~~el~~L~~~l~~ 107 (169)
.+.||++|+..|..+|..
T Consensus 65 ~~~ls~~ei~~l~~yl~~ 82 (89)
T 1c6r_A 65 SGTLDDDEIAAVAAYVYD 82 (89)
T ss_dssp TTTSCHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHH
Confidence 367999999999999864
No 112
>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron transport protein (cytochrome); HET: HEM; 1.90A {Chlamydomonas reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A*
Probab=20.92 E-value=62 Score=20.61 Aligned_cols=18 Identities=33% Similarity=0.453 Sum_probs=15.4
Q ss_pred cCCCCHHHHHHHHHHHhh
Q 030930 90 TKDMSEEELITIRDEVSK 107 (169)
Q Consensus 90 ~~~Ls~~el~~L~~~l~~ 107 (169)
.+.||++|+..|..+|..
T Consensus 64 ~~~ls~~ei~~l~~yl~~ 81 (90)
T 1cyi_A 64 ADRLSEEEIQAVAEYVFK 81 (90)
T ss_dssp TTTSCHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHh
Confidence 357999999999999864
No 113
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=20.66 E-value=50 Score=19.24 Aligned_cols=40 Identities=23% Similarity=0.199 Sum_probs=29.9
Q ss_pred eccccccCHHHHHHHHHHcCCCccc-cCCCCHHHHHHHHHHH
Q 030930 65 LQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEV 105 (169)
Q Consensus 65 Lt~I~GIG~~~A~~Ic~~lgi~~k~-~~~Ls~~el~~L~~~l 105 (169)
|.+-.|++.......++.+|+ .+. ...+++++...|.+.+
T Consensus 8 lAkel~~~~k~l~~~l~~~g~-~k~~~s~l~~~~~~~l~~~~ 48 (49)
T 1nd9_A 8 LAAERQTSVERLVQQFADAGI-RKSADDSVSAQEKQTLIDHL 48 (49)
T ss_dssp HHHHHSSSHHHHHHHHHHHTS-CCSSSSCEETTGGGHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHcCC-CCCCCCcCCHHHHHHHHHHh
Confidence 455568889999999999999 433 3668888887777654
No 114
>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*
Probab=20.58 E-value=64 Score=20.36 Aligned_cols=18 Identities=11% Similarity=0.095 Sum_probs=15.3
Q ss_pred cCCCCHHHHHHHHHHHhh
Q 030930 90 TKDMSEEELITIRDEVSK 107 (169)
Q Consensus 90 ~~~Ls~~el~~L~~~l~~ 107 (169)
.+.||++|+..|..+|..
T Consensus 66 ~~~ls~~ei~~l~~yl~~ 83 (89)
T 1f1f_A 66 NGRLSPLQIEDVAAYVVD 83 (89)
T ss_dssp TTTSCHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHH
Confidence 357999999999999854
No 115
>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A {Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A*
Probab=20.50 E-value=65 Score=20.06 Aligned_cols=18 Identities=11% Similarity=0.148 Sum_probs=15.3
Q ss_pred cCCCCHHHHHHHHHHHhh
Q 030930 90 TKDMSEEELITIRDEVSK 107 (169)
Q Consensus 90 ~~~Ls~~el~~L~~~l~~ 107 (169)
.+.||++|+..|..+|..
T Consensus 62 ~~~ls~~ei~~l~~yl~~ 79 (85)
T 1gdv_A 62 GGRLVDEDIEDAANYVLS 79 (85)
T ss_dssp TTTSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 358999999999999854
No 116
>1cno_A Cytochrome C552; electron transport, pseudomonas nautica, X RAY structure, multiwavelength anomalous dispersion, heme; HET: HEC; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.1
Probab=20.32 E-value=66 Score=20.57 Aligned_cols=17 Identities=6% Similarity=0.237 Sum_probs=15.2
Q ss_pred CCCCHHHHHHHHHHHhh
Q 030930 91 KDMSEEELITIRDEVSK 107 (169)
Q Consensus 91 ~~Ls~~el~~L~~~l~~ 107 (169)
+.||++|+..|..+|..
T Consensus 65 ~~ls~~ei~~l~~yl~~ 81 (87)
T 1cno_A 65 TALSDADIANLAAYYAS 81 (87)
T ss_dssp TTCCHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHh
Confidence 68999999999999865
No 117
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=20.15 E-value=74 Score=31.50 Aligned_cols=59 Identities=14% Similarity=0.210 Sum_probs=37.1
Q ss_pred eEEeEeeccccccCHHHHHHHHHHcCCCccccCCCCHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhhhcccC
Q 030930 59 KRIEYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGI 134 (169)
Q Consensus 59 K~i~~ALt~I~GIG~~~A~~Ic~~lgi~~k~~~~Ls~~el~~L~~~l~~~~Ie~dLr~~~~~nI~rL~~I~sYRG~ 134 (169)
..|.++|..|+|+|...|..|.+.=. -|.+++ +.+....-.+ -+..|+.|++.+++.++
T Consensus 963 ~~Ir~gL~aIkGlG~~~a~~Iv~aR~-----~gpF~s-----~~Df~~R~~v-------~k~~lE~Li~aGAfd~l 1021 (1041)
T 3f2b_A 963 NSLIPPFNAIPGLGTNVAQAIVRARE-----EGEFLS-----KEDLQQRGKL-------SKTLLEYLESRGCLDSL 1021 (1041)
T ss_dssp TEEECCGGGSTTCCHHHHHHHHHHHH-----TSCCCS-----HHHHHHHHTC-------CHHHHHHHHHTTTTTTS
T ss_pred CEEEEchHhhCCCCHHHHHHHHHHHh-----CCCCCC-----HHHHHHHHCc-------CHHHHHHHHHCCCCcCC
Confidence 37999999999999999999986322 122211 1111111011 23567789999888754
No 118
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=20.14 E-value=79 Score=29.69 Aligned_cols=36 Identities=11% Similarity=0.135 Sum_probs=29.6
Q ss_pred ccccccCHHHHHHHHHHcCCC-ccccCCCCHHHHHHH
Q 030930 66 QYIHGVGRTRARQILVDLKME-NKITKDMSEEELITI 101 (169)
Q Consensus 66 t~I~GIG~~~A~~Ic~~lgi~-~k~~~~Ls~~el~~L 101 (169)
-.|.|+|..++.++.....|. ..-.-.|+.+++..|
T Consensus 449 ldI~GLG~k~i~~L~~~g~I~~~aDL~~L~~~~L~~l 485 (671)
T 2owo_A 449 MDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485 (671)
T ss_dssp TCCTTCCHHHHHHHHHTTCCSSGGGGGTCCHHHHHTS
T ss_pred cCCCCCCHHHHHHHHHcCCCCCHHHHHhhCHHHhhcc
Confidence 589999999999999999988 445778887776554
Done!