Query 030930
Match_columns 169
No_of_seqs 126 out of 925
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 10:23:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030930.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030930hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2uubm1 a.156.1.1 (M:2-126) Ri 100.0 1.3E-51 9.7E-56 315.2 4.2 122 48-169 1-124 (125)
2 d2gy9m1 a.156.1.1 (M:1-114) Ri 100.0 1.7E-48 1.2E-52 293.7 3.8 111 48-158 1-112 (114)
3 d2hkja1 a.156.1.3 (A:229-306) 97.4 0.0001 7.5E-09 49.5 4.7 48 61-108 26-75 (78)
4 d1ee8a1 a.156.1.2 (A:122-210) 95.5 0.0088 6.4E-07 40.8 4.9 50 58-107 22-75 (89)
5 d1tdza1 a.156.1.2 (A:132-219) 95.4 0.011 7.7E-07 40.4 4.9 50 58-107 22-75 (88)
6 d1k82a1 a.156.1.2 (A:129-216) 95.3 0.011 8.2E-07 40.2 4.8 51 57-107 21-75 (88)
7 d1k3xa1 a.156.1.2 (A:125-213) 95.3 0.011 7.9E-07 40.2 4.6 50 57-106 25-78 (89)
8 d1r2za1 a.156.1.2 (A:135-228) 95.1 0.014 1E-06 40.2 4.8 50 57-106 21-74 (94)
9 d2bgwa1 a.60.2.5 (A:160-229) D 94.4 0.0061 4.4E-07 39.6 1.4 39 62-101 12-50 (70)
10 d1pzna1 a.60.4.1 (A:35-95) DNA 94.1 0.019 1.4E-06 36.4 3.2 39 64-103 2-41 (61)
11 d2i1qa1 a.60.4.1 (A:5-64) DNA 93.5 0.026 1.9E-06 35.7 3.0 36 65-101 1-37 (60)
12 d2bcqa2 a.60.12.1 (A:329-385) 92.7 0.035 2.6E-06 35.3 2.8 40 61-101 6-49 (57)
13 d1kfta_ a.60.2.3 (A:) Excinucl 92.6 0.0062 4.5E-07 38.3 -1.0 37 64-101 3-39 (56)
14 d2fmpa2 a.60.12.1 (A:92-148) D 91.8 0.031 2.3E-06 35.6 1.6 36 64-100 8-48 (57)
15 d2a1jb1 a.60.2.5 (B:219-296) D 91.7 0.024 1.7E-06 37.4 1.0 40 61-101 17-56 (78)
16 d2a1ja1 a.60.2.5 (A:837-898) D 90.7 0.069 5E-06 33.6 2.5 38 64-102 4-41 (62)
17 d1jmsa3 a.60.12.1 (A:243-302) 90.3 0.049 3.6E-06 34.9 1.5 39 62-101 7-51 (60)
18 d1x2ia1 a.60.2.5 (A:2-69) ATP- 89.5 0.024 1.7E-06 36.6 -0.6 23 62-84 9-31 (68)
19 d2axtu1 a.60.12.2 (U:37-134) P 89.2 0.1 7.3E-06 36.4 2.6 56 55-110 19-78 (98)
20 d1bvsa2 a.60.2.1 (A:64-134) DN 89.0 0.069 5E-06 35.2 1.5 21 63-83 44-64 (71)
21 d1ixra1 a.60.2.1 (A:63-135) DN 88.2 0.086 6.3E-06 34.9 1.5 22 63-84 45-66 (73)
22 d2i0za2 e.74.1.1 (A:193-361) F 87.5 0.3 2.2E-05 35.5 4.5 53 56-110 102-155 (169)
23 d1cuka2 a.60.2.1 (A:65-142) DN 86.4 0.12 8.5E-06 34.6 1.4 21 63-83 44-64 (78)
24 d2gqfa2 e.74.1.1 (A:195-342) H 84.9 0.22 1.6E-05 35.8 2.4 53 56-110 84-136 (148)
25 d1vdda_ e.49.1.1 (A:) Recombin 79.4 0.64 4.7E-05 35.8 3.3 72 61-139 10-108 (199)
26 d2duya1 a.60.2.7 (A:11-75) Unc 71.2 1.5 0.00011 27.5 2.9 48 58-105 12-63 (65)
27 d1bvsa2 a.60.2.1 (A:64-134) DN 67.0 1.3 9.3E-05 28.7 1.9 27 59-85 5-31 (71)
28 d1cuka2 a.60.2.1 (A:65-142) DN 65.8 1.3 9.3E-05 29.2 1.7 25 60-84 6-30 (78)
29 d1ixra1 a.60.2.1 (A:63-135) DN 65.3 1.4 0.0001 28.6 1.9 25 60-84 7-31 (73)
30 d1tdha1 a.156.1.2 (A:132-246) 63.8 0.49 3.6E-05 33.4 -0.8 47 58-104 27-77 (115)
31 d1jmsa1 a.60.6.1 (A:148-242) T 58.9 3.4 0.00025 27.5 3.0 21 64-84 63-83 (95)
32 d1ul1x1 a.60.7.1 (X:218-357) F 58.7 2.4 0.00017 29.5 2.2 20 65-84 18-37 (140)
33 d1rxwa1 a.60.7.1 (A:220-324) F 58.6 2.4 0.00017 28.6 2.1 19 66-84 19-37 (105)
34 d1kg2a_ a.96.1.2 (A:) Catalyti 58.6 1.8 0.00013 32.7 1.7 21 63-83 109-129 (224)
35 d1xo1a1 a.60.7.1 (A:186-290) T 57.5 2.7 0.0002 28.5 2.3 20 65-84 21-40 (105)
36 d3bzka1 a.60.2.6 (A:474-563) T 56.9 4.1 0.0003 26.9 3.1 45 61-105 33-85 (90)
37 d1kfta_ a.60.2.3 (A:) Excinucl 56.1 1.9 0.00014 26.2 1.1 20 64-83 35-54 (56)
38 d2csba3 a.60.2.4 (A:410-464) T 55.7 4.7 0.00035 24.3 2.9 21 64-84 3-23 (55)
39 d1keaa_ a.96.1.2 (A:) Thymine- 55.4 2.3 0.00017 32.1 1.8 22 62-83 112-133 (217)
40 d2noha1 a.96.1.3 (A:136-325) 8 55.4 2.1 0.00016 31.3 1.5 42 61-104 101-142 (190)
41 d2fmpa1 a.60.6.1 (A:10-91) DNA 55.2 2.4 0.00018 27.5 1.7 21 64-84 49-69 (82)
42 d1a77a1 a.60.7.1 (A:209-316) F 54.8 2.5 0.00018 28.5 1.8 18 67-84 21-38 (108)
43 d1rrqa1 a.96.1.2 (A:9-229) Cat 54.7 2.3 0.00017 32.1 1.7 21 63-83 107-127 (221)
44 d1pu6a_ a.96.1.5 (A:) 3-Methyl 54.0 1.9 0.00014 32.7 1.1 42 60-105 117-159 (217)
45 d2i1qa1 a.60.4.1 (A:5-64) DNA 52.9 2.9 0.00021 25.6 1.7 20 64-83 33-52 (60)
46 d1x2ia1 a.60.2.5 (A:2-69) ATP- 51.9 3.3 0.00024 25.8 1.8 22 64-85 43-64 (68)
47 d1orna_ a.96.1.1 (A:) Endonucl 51.5 2.9 0.00021 31.3 1.8 27 54-83 104-130 (214)
48 d2abka_ a.96.1.1 (A:) Endonucl 50.4 2.8 0.0002 31.5 1.5 21 62-82 108-128 (211)
49 d1qyra_ c.66.1.24 (A:) High le 49.4 3.9 0.00028 31.6 2.2 31 77-107 219-250 (252)
50 d1gm5a2 b.40.4.9 (A:106-285) R 48.7 3.7 0.00027 29.4 1.9 25 61-86 8-32 (180)
51 d1mpga1 a.96.1.3 (A:100-282) 3 46.2 3.6 0.00026 30.0 1.5 22 60-81 105-126 (183)
52 d1b43a1 a.60.7.1 (A:220-339) F 45.9 3.7 0.00027 28.4 1.5 20 66-85 20-39 (120)
53 d1kx7a_ a.3.1.1 (A:) Mono-heme 45.5 5.8 0.00042 24.6 2.3 17 91-107 63-79 (81)
54 d2edua1 a.60.2.7 (A:8-98) KIF2 45.0 11 0.0008 24.8 3.8 43 62-104 32-82 (91)
55 d1im4a_ e.8.1.7 (A:) DinB homo 43.3 6.2 0.00045 29.3 2.5 23 63-86 183-205 (209)
56 d1jx4a2 e.8.1.7 (A:1-240) DinB 42.6 11 0.00077 28.3 3.8 36 63-99 178-214 (240)
57 d1jiha2 e.8.1.7 (A:1-389) DNA 41.8 5.4 0.0004 32.8 2.1 25 63-87 300-324 (389)
58 d1cc5a_ a.3.1.1 (A:) Cytochrom 41.0 8 0.00058 23.9 2.4 17 91-107 66-82 (83)
59 d1ngna_ a.96.1.2 (A:) Mismatch 40.2 6 0.00044 27.9 1.9 21 63-83 93-113 (144)
60 d1zq9a1 c.66.1.24 (A:36-313) P 39.2 15 0.0011 28.6 4.3 32 76-107 241-272 (278)
61 d2bcqa1 a.60.6.1 (A:252-327) D 38.7 6.4 0.00047 24.7 1.7 21 64-84 47-67 (76)
62 d1dgsa1 a.60.2.2 (A:401-581) N 36.4 13 0.00098 27.0 3.4 37 63-101 108-144 (181)
63 d1zeta2 e.8.1.7 (A:27-299) DNA 34.2 7.7 0.00056 29.6 1.8 22 64-86 209-230 (273)
64 d2cqqa1 a.4.1.3 (A:8-66) DnaJ 32.9 17 0.0012 22.2 2.9 39 91-129 2-49 (59)
65 d2csba4 a.60.2.4 (A:465-519) T 31.9 12 0.00088 22.4 2.0 38 64-101 5-51 (55)
66 d1c53a_ a.3.1.1 (A:) Cytochrom 31.5 13 0.00094 22.3 2.2 18 90-107 61-78 (79)
67 d1aiha_ d.163.1.1 (A:) Integra 30.9 20 0.0015 24.3 3.5 38 90-136 4-41 (170)
68 d1szpa1 a.60.4.1 (A:81-144) DN 30.2 11 0.00079 23.3 1.7 19 65-83 38-56 (64)
69 d1rkba_ c.37.1.1 (A:) Adenylat 28.3 19 0.0014 23.5 2.9 24 63-86 7-31 (173)
70 d1kaga_ c.37.1.2 (A:) Shikimat 28.2 21 0.0015 22.7 2.9 24 63-86 5-29 (169)
71 d1h1oa1 a.3.1.4 (A:12-93) Cyto 27.2 18 0.0013 21.9 2.4 19 90-108 57-75 (82)
72 d2p6ra2 a.289.1.2 (A:489-686) 27.0 12 0.00084 28.0 1.6 22 64-86 145-166 (198)
73 d1cora_ a.3.1.1 (A:) Cytochrom 26.2 19 0.0014 21.8 2.4 17 91-107 64-80 (82)
74 d1wvec1 a.3.1.1 (C:602-675) p- 26.2 20 0.0014 21.8 2.4 18 90-107 54-71 (74)
75 d1ae9a_ d.163.1.1 (A:) Integra 26.2 33 0.0024 22.1 3.8 16 92-107 3-18 (179)
76 d1ls9a_ a.3.1.1 (A:) Cytochrom 25.9 19 0.0014 22.0 2.3 17 90-106 67-83 (91)
77 d1f1fa_ a.3.1.1 (A:) Cytochrom 25.8 20 0.0015 21.6 2.4 17 90-106 65-81 (88)
78 d1t94a2 e.8.1.7 (A:75-407) DNA 25.5 17 0.0013 28.7 2.5 24 63-87 275-298 (333)
79 d1cmwa1 a.60.7.1 (A:174-289) 5 25.2 2 0.00014 29.1 -3.0 22 65-86 20-41 (116)
80 d1ctja_ a.3.1.1 (A:) Cytochrom 24.8 20 0.0014 21.9 2.2 18 90-107 65-82 (89)
81 d1fcdc1 a.3.1.4 (C:1-80) Flavo 24.8 22 0.0016 21.4 2.5 18 90-107 58-75 (80)
82 d1ynra1 a.3.1.1 (A:1-80) Cytoc 24.6 25 0.0018 21.3 2.7 18 90-107 61-78 (80)
83 d1gksa_ a.3.1.1 (A:) Cytochrom 24.1 20 0.0014 22.1 2.1 20 87-106 56-75 (78)
84 d1m70a1 a.3.1.4 (A:1-92) Cytoc 24.0 26 0.0019 21.1 2.7 18 90-107 70-87 (92)
85 d1b22a_ a.60.4.1 (A:) DNA repa 23.0 11 0.0008 23.7 0.6 20 64-83 44-63 (70)
86 d1cyja_ a.3.1.1 (A:) Cytochrom 23.0 23 0.0017 21.6 2.3 17 90-106 64-80 (90)
87 d1a0pa2 d.163.1.1 (A:111-292) 22.9 30 0.0022 22.9 3.1 40 91-137 1-40 (182)
88 d1gdva_ a.3.1.1 (A:) Cytochrom 22.8 25 0.0018 21.1 2.4 17 90-106 62-78 (85)
89 d1f46a_ d.129.4.1 (A:) Cell-di 22.6 40 0.0029 23.2 3.8 36 73-108 97-134 (139)
90 d1f54a_ a.39.1.5 (A:) Calmodul 22.3 26 0.0019 21.0 2.4 18 91-108 2-19 (77)
91 d1cnoa_ a.3.1.1 (A:) Cytochrom 21.9 27 0.002 21.1 2.5 19 90-108 64-82 (86)
92 d1a56a_ a.3.1.1 (A:) Cytochrom 21.5 21 0.0015 21.7 1.8 17 91-107 63-79 (81)
93 d1mz4a_ a.3.1.1 (A:) Cytochrom 21.5 25 0.0018 22.8 2.4 16 91-106 105-120 (131)
94 d351ca_ a.3.1.1 (A:) Cytochrom 21.1 29 0.0021 21.0 2.5 17 91-107 64-80 (82)
95 d1c6sa_ a.3.1.1 (A:) Cytochrom 20.8 22 0.0016 21.5 1.9 17 90-106 62-78 (87)
96 d1f1ca_ a.3.1.1 (A:) Photosyst 20.4 28 0.002 22.5 2.4 16 91-106 103-118 (129)
97 d2pq3a1 a.39.1.5 (A:3-75) Calm 20.3 28 0.0021 20.7 2.3 17 92-108 1-17 (73)
No 1
>d2uubm1 a.156.1.1 (M:2-126) Ribosomal protein S13 {Thermus thermophilus [TaxId: 274]}
Probab=100.00 E-value=1.3e-51 Score=315.24 Aligned_cols=122 Identities=49% Similarity=0.861 Sum_probs=117.9
Q ss_pred eEEeCccCCCCeEEeEeeccccccCHHHHHHHHHHcCCC-ccccCCCCHHHHHHHHHHHh-hcccchHHHHHHHHHHHHH
Q 030930 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVS-KYMIEGDLRRFNALAIRRL 125 (169)
Q Consensus 48 vrI~~tni~~~K~i~~ALt~I~GIG~~~A~~Ic~~lgi~-~k~~~~Ls~~el~~L~~~l~-~~~Ie~dLr~~~~~nI~rL 125 (169)
.||+|||||++|+|++|||+|||||+++|.+||+++||| +.++++||++|++.|+++++ +|.+|+||++.+++||+||
T Consensus 1 aRI~g~di~~~K~v~~ALt~I~GIG~~~A~~Ic~~lgId~~~k~~~Lt~~qi~~I~~~i~~~~~i~~~L~~~~~~dIkrl 80 (125)
T d2uubm1 1 ARIAGVEIPRNKRVDVALTYIYGIGKARAKEALEKTGINPATRVKDLTEAEVVRLREYVENTWKLEGELRAEVAANIKRL 80 (125)
T ss_dssp CCCSTTCCCCSSBHHHHHTTSTTCCHHHHHHHHHTTTCCTTSBGGGCCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHH
T ss_pred CcccCccCCCCCEEEEeeeeeeCcCHHHHHHHHHHcCCCcccccccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999999 66789999999999999997 5999999999999999999
Q ss_pred HhhhhcccCccCCCCccCCccCccccccCCCceeeeccccCCCC
Q 030930 126 KEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 169 (169)
Q Consensus 126 ~~I~sYRG~RH~~GLPVRGQRTrTNarT~Kg~~~gV~~kK~~~~ 169 (169)
++|+||||+||.+|||||||||||||||+||.++||++||++|+
T Consensus 81 ~~i~~yRG~RH~~gLpvRGQRT~tN~rt~kg~~~~v~~kk~~~~ 124 (125)
T d2uubm1 81 MDIGCYRGLRHRRGLPVRGQRTRTNARTRKGPRKTVAGKKKAPR 124 (125)
T ss_dssp HHTTCHHHHHHHHTCCSSSCCCSSCCHHHHCSCCCCCCCSSSCC
T ss_pred HHhhhhhhhhhcCCCCCCCCCCCCCccccCCCccccccccCCCC
Confidence 99999999999999999999999999999999999999999875
No 2
>d2gy9m1 a.156.1.1 (M:1-114) Ribosomal protein S13 {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=1.7e-48 Score=293.69 Aligned_cols=111 Identities=47% Similarity=0.826 Sum_probs=107.4
Q ss_pred eEEeCccCCCCeEEeEeeccccccCHHHHHHHHHHcCCC-ccccCCCCHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 030930 48 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLK 126 (169)
Q Consensus 48 vrI~~tni~~~K~i~~ALt~I~GIG~~~A~~Ic~~lgi~-~k~~~~Ls~~el~~L~~~l~~~~Ie~dLr~~~~~nI~rL~ 126 (169)
.||+|||||++|+|.+|||+|||||.++|.+||+++||| +.++++||++|++.|.+++++|.+++||++.+++||+||+
T Consensus 1 aRI~g~dip~~K~v~~ALt~I~GIG~~~A~~Ic~~lgid~~~kv~~Lt~~qi~~l~~~i~~~~i~~~L~~~~~~dI~rl~ 80 (114)
T d2gy9m1 1 ARIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEVAKFVVEGDLRREISMSIKRLM 80 (114)
T ss_dssp CCCSSSCCCCSSBHHHHHTTSSSCCHHHHHHHHHHHTCCTTSBTTSCCHHHHHHHHHHHHSSCCSHHHHHHHHHHHHHTT
T ss_pred CcccCccCCCCCEEEEEeeeeeCcCHHHHHHHHHHcCCCcccccCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999999 6778999999999999999999999999999999999999
Q ss_pred hhhhcccCccCCCCccCCccCccccccCCCce
Q 030930 127 EIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKR 158 (169)
Q Consensus 127 ~I~sYRG~RH~~GLPVRGQRTrTNarT~Kg~~ 158 (169)
+|+||||+||.+|||||||||||||||+||.+
T Consensus 81 ~I~~yrG~RH~~gLpvRGQrT~tNart~k~~~ 112 (114)
T d2gy9m1 81 DLGCYRGLRHRRGLPVRGQRTKTNARTRKGPR 112 (114)
T ss_dssp TTTCHHHHHHHCCSCCCCCCSSSSCHHHHCSC
T ss_pred HhccceeeeccCCCCCCCCCCCCCccccCCCC
Confidence 99999999999999999999999999987754
No 3
>d2hkja1 a.156.1.3 (A:229-306) Topoisomerase VI-B subunit middle domain {Archaeon Sulfolobus shibatae [TaxId: 2286]}
Probab=97.36 E-value=0.0001 Score=49.46 Aligned_cols=48 Identities=29% Similarity=0.423 Sum_probs=40.3
Q ss_pred EeEee-ccccccCHHHHHHHHHHcCCCc-cccCCCCHHHHHHHHHHHhhc
Q 030930 61 IEYSL-QYIHGVGRTRARQILVDLKMEN-KITKDMSEEELITIRDEVSKY 108 (169)
Q Consensus 61 i~~AL-t~I~GIG~~~A~~Ic~~lgi~~-k~~~~Ls~~el~~L~~~l~~~ 108 (169)
+.-.| +.+-|||..+|..||..+||++ ..+++|+++|+++|.+.+.+|
T Consensus 26 ~~l~lq~~f~GvGn~~a~Eil~~agi~P~~~~~~L~~~e~~~L~~air~~ 75 (78)
T d2hkja1 26 IKEFLVNEFQSIGDTTADKILELAGLKPNKKVKNLTEEEITRLVETFKKY 75 (78)
T ss_dssp HHHHHHHHSSSCCHHHHHHHHHHHTCCTTSBGGGCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcccCHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHHhhh
Confidence 34445 4466999999999999999995 557999999999999998765
No 4
>d1ee8a1 a.156.1.2 (A:122-210) DNA repair protein MutM (Fpg) {Thermus thermophilus [TaxId: 274]}
Probab=95.53 E-value=0.0088 Score=40.82 Aligned_cols=50 Identities=18% Similarity=0.286 Sum_probs=41.1
Q ss_pred CeEEeEee---ccccccCHHHHHHHHHHcCCCcc-ccCCCCHHHHHHHHHHHhh
Q 030930 58 NKRIEYSL---QYIHGVGRTRARQILVDLKMENK-ITKDMSEEELITIRDEVSK 107 (169)
Q Consensus 58 ~K~i~~AL---t~I~GIG~~~A~~Ic~~lgi~~k-~~~~Ls~~el~~L~~~l~~ 107 (169)
+..|.-+| .-+-|||..++..||-.++|+|. .+++|+++|++.|-+.+..
T Consensus 22 ~~~ik~~LlDQ~~iaGiGN~y~~EiLf~a~I~P~~~~~~Ls~~e~~~L~~~i~~ 75 (89)
T d1ee8a1 22 ARPLKALLLDQRLAAGVGNIYADEALFRARLSPFRPARSLTEEEARRLYRALRE 75 (89)
T ss_dssp CSBHHHHHHHSSSSTTCCHHHHHHHHHHTTCCSSSBGGGCCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHhccccCCCCcHHHHHHHHHHHcCccchhhhCCHHHHHHHHHHHHH
Confidence 44555555 66889999999999999999965 5699999999999876643
No 5
>d1tdza1 a.156.1.2 (A:132-219) DNA repair protein MutM (Fpg) {Lactococcus lactis [TaxId: 1358]}
Probab=95.41 E-value=0.011 Score=40.38 Aligned_cols=50 Identities=20% Similarity=0.332 Sum_probs=41.6
Q ss_pred CeEEeEee---ccccccCHHHHHHHHHHcCCCcc-ccCCCCHHHHHHHHHHHhh
Q 030930 58 NKRIEYSL---QYIHGVGRTRARQILVDLKMENK-ITKDMSEEELITIRDEVSK 107 (169)
Q Consensus 58 ~K~i~~AL---t~I~GIG~~~A~~Ic~~lgi~~k-~~~~Ls~~el~~L~~~l~~ 107 (169)
++.|..+| +-|-|||..++..||-.++|+|. .+++|+++|+..|-+.+..
T Consensus 22 ~~~ik~~LldQ~~iaGIGNiy~~EiLf~a~I~P~~~~~~Ls~~~~~~L~~~i~~ 75 (88)
T d1tdza1 22 TKKIKPYLLEQTLVAGLGNIYVDEVLWLAKIHPEKETNQLIESSIHLLHDSIIE 75 (88)
T ss_dssp CSBHHHHHHTSSSSSCCCHHHHHHHHHHTTCCTTCBGGGCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHhccccCCcChHHHHHHHHHHHcCccchhhHcCHHHHHHHHHHHHH
Confidence 45566666 66899999999999999999965 5699999999999876643
No 6
>d1k82a1 a.156.1.2 (A:129-216) DNA repair protein MutM (Fpg) {Escherichia coli [TaxId: 562]}
Probab=95.31 E-value=0.011 Score=40.22 Aligned_cols=51 Identities=18% Similarity=0.225 Sum_probs=42.1
Q ss_pred CCeEEeEee---ccccccCHHHHHHHHHHcCCCcc-ccCCCCHHHHHHHHHHHhh
Q 030930 57 NNKRIEYSL---QYIHGVGRTRARQILVDLKMENK-ITKDMSEEELITIRDEVSK 107 (169)
Q Consensus 57 ~~K~i~~AL---t~I~GIG~~~A~~Ic~~lgi~~k-~~~~Ls~~el~~L~~~l~~ 107 (169)
.+.+|..+| +-|-|||..++..||-.++|+|. .+++|+++|+.+|-+.+..
T Consensus 21 ~~~~ik~~LlDQ~~iaGiGN~y~~EiLf~a~I~P~~~~~~L~~~~~~~L~~~i~~ 75 (88)
T d1k82a1 21 KKTAIKPWLMDNKLVVGVGNIYASESLFAAGIHPDRLASSLSLAECELLARVIKA 75 (88)
T ss_dssp CCSBHHHHHTCTTTCSSCCHHHHHHHHHHHTCCTTSBGGGCCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHccccccccchHHHHHHHHHHCCCccChHHHCCHHHHHHHHHHHHH
Confidence 345566666 56889999999999999999965 5699999999999887643
No 7
>d1k3xa1 a.156.1.2 (A:125-213) Endonuclease VIII {Escherichia coli [TaxId: 562]}
Probab=95.27 E-value=0.011 Score=40.17 Aligned_cols=50 Identities=18% Similarity=0.336 Sum_probs=41.9
Q ss_pred CCeEEeEee---ccccccCHHHHHHHHHHcCCCcc-ccCCCCHHHHHHHHHHHh
Q 030930 57 NNKRIEYSL---QYIHGVGRTRARQILVDLKMENK-ITKDMSEEELITIRDEVS 106 (169)
Q Consensus 57 ~~K~i~~AL---t~I~GIG~~~A~~Ic~~lgi~~k-~~~~Ls~~el~~L~~~l~ 106 (169)
.+++|..+| +-+-|||..++..||-.++|+|. .+++|+++|++.|-+.+.
T Consensus 25 ~~~~Ik~~LlDQ~~~aGIGN~~~~EiL~~a~i~P~~~~~~L~~~~~~~L~~~~~ 78 (89)
T d1k3xa1 25 RNRQFAGLLLDQAFLAGLGNYLRVEILWQVGLTGNHKAKDLNAAQLDALAHALL 78 (89)
T ss_dssp TTSCHHHHTTCTTTSBTCCHHHHHHHHHHHTCCSSCCGGGSCHHHHHHHHHHHH
T ss_pred ccchHHHHHhcCccccccCcHHHHHHHHHhcccccCchhhCCHHHHHHHHHHHH
Confidence 355676666 56889999999999999999965 569999999999977664
No 8
>d1r2za1 a.156.1.2 (A:135-228) DNA repair protein MutM (Fpg) {Bacillus stearothermophilus [TaxId: 1422]}
Probab=95.09 E-value=0.014 Score=40.23 Aligned_cols=50 Identities=14% Similarity=0.251 Sum_probs=42.7
Q ss_pred CCeEEeEee---ccccccCHHHHHHHHHHcCCCcc-ccCCCCHHHHHHHHHHHh
Q 030930 57 NNKRIEYSL---QYIHGVGRTRARQILVDLKMENK-ITKDMSEEELITIRDEVS 106 (169)
Q Consensus 57 ~~K~i~~AL---t~I~GIG~~~A~~Ic~~lgi~~k-~~~~Ls~~el~~L~~~l~ 106 (169)
.+.+|.-+| +-+-|||..++..||-.++|+|. .+++|+++|+.+|-+.+.
T Consensus 21 ~~~~ik~~LlDQ~~~aGiGN~y~~EiLf~a~I~P~~~~~~Ls~~e~~~L~~~~~ 74 (94)
T d1r2za1 21 TKRSVKALLLDQTVVAGFGNIYVDESLFRAGILPGRPAASLSSKEIERLHEEMV 74 (94)
T ss_dssp CCSBHHHHHHCTTTSSSCCHHHHHHHHHHHTCCTTSBGGGCCHHHHHHHHHHHH
T ss_pred CCccHHHHHHhccccCCcccHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHH
Confidence 456777777 77899999999999999999965 569999999999987664
No 9
>d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]}
Probab=94.42 E-value=0.0061 Score=39.60 Aligned_cols=39 Identities=28% Similarity=0.347 Sum_probs=28.6
Q ss_pred eEeeccccccCHHHHHHHHHHcCCCccccCCCCHHHHHHH
Q 030930 62 EYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITI 101 (169)
Q Consensus 62 ~~ALt~I~GIG~~~A~~Ic~~lgi~~k~~~~Ls~~el~~L 101 (169)
.++|+.|+|||..+|..|++.+| +-..+-.-+.+|+..+
T Consensus 12 ~~~L~~IpgIG~~~a~~L~~~F~-s~~~l~~As~eeL~~v 50 (70)
T d2bgwa1 12 LYILQSFPGIGRRTAERILERFG-SLERFFTASKAEISKV 50 (70)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHS-SHHHHTTCCHHHHHHS
T ss_pred HHHHcCCCCcCHHHHHHHHHHhC-CHHHHHHcCHHHHHcC
Confidence 35789999999999999999998 4333344455666554
No 10
>d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=94.11 E-value=0.019 Score=36.40 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=30.7
Q ss_pred eeccccccCHHHHHHHHHHcCCC-ccccCCCCHHHHHHHHH
Q 030930 64 SLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRD 103 (169)
Q Consensus 64 ALt~I~GIG~~~A~~Ic~~lgi~-~k~~~~Ls~~el~~L~~ 103 (169)
+|.+|+|||+.+|..+.+. |+. -..+-+.+.+|+..+.-
T Consensus 2 ~L~~i~GIG~~~a~~L~~~-g~~sv~~l~~a~~~eL~~i~G 41 (61)
T d1pzna1 2 SIEDLPGVGPATAEKLREA-GYDTLEAIAVASPIELKEVAG 41 (61)
T ss_dssp CSSCCTTCCHHHHHHHHTT-TCCSHHHHHTCCHHHHHHHHC
T ss_pred ccccCCCCCHHHHHHHHHh-cCCCHHHHHhCCHHHHHHCCC
Confidence 6899999999999999876 666 44567778888777643
No 11
>d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Probab=93.47 E-value=0.026 Score=35.73 Aligned_cols=36 Identities=22% Similarity=0.225 Sum_probs=27.1
Q ss_pred eccccccCHHHHHHHHHHcCCC-ccccCCCCHHHHHHH
Q 030930 65 LQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITI 101 (169)
Q Consensus 65 Lt~I~GIG~~~A~~Ic~~lgi~-~k~~~~Ls~~el~~L 101 (169)
|+.|+|||+.++..+.+. |+. -..+-+.+.+|+..+
T Consensus 1 L~~IpGIG~~~a~~L~~~-G~~tv~~l~~a~~eeL~~i 37 (60)
T d2i1qa1 1 LTDLPGVGPSTAEKLVEA-GYIDFMKIATATVGELTDI 37 (60)
T ss_dssp CTTSTTCCHHHHHHHHHH-TCCSHHHHHTCCHHHHHTS
T ss_pred CCCCCCCCHHHHHHHHHc-cCCCHHHHHhCCHHHHHHC
Confidence 789999999999998876 666 344566677666554
No 12
>d2bcqa2 a.60.12.1 (A:329-385) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]}
Probab=92.74 E-value=0.035 Score=35.31 Aligned_cols=40 Identities=13% Similarity=0.211 Sum_probs=28.7
Q ss_pred EeEeeccccccCHHHHHHHHHHcCCCc--c-c-cCCCCHHHHHHH
Q 030930 61 IEYSLQYIHGVGRTRARQILVDLKMEN--K-I-TKDMSEEELITI 101 (169)
Q Consensus 61 i~~ALt~I~GIG~~~A~~Ic~~lgi~~--k-~-~~~Ls~~el~~L 101 (169)
+...|++|||||+.+|....++ |+.+ . + -.+||+.|..=|
T Consensus 6 ~l~~ft~I~GvGp~~A~~l~~~-Gi~ti~dLr~~~~Ln~~Q~iGL 49 (57)
T d2bcqa2 6 VLELFSNIWGAGTKTAQMWYQQ-GFRSLEDIRSQASLTTQQAIGL 49 (57)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHT-TCCSHHHHHHHCCCCHHHHHHH
T ss_pred HHHHHhccccccHHHHHHHHHh-CCCCHHHHHhcCCCCHHHHHhH
Confidence 3446799999999999999876 8862 2 2 256777665444
No 13
>d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=92.63 E-value=0.0062 Score=38.30 Aligned_cols=37 Identities=30% Similarity=0.394 Sum_probs=27.2
Q ss_pred eeccccccCHHHHHHHHHHcCCCccccCCCCHHHHHHH
Q 030930 64 SLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITI 101 (169)
Q Consensus 64 ALt~I~GIG~~~A~~Ic~~lgi~~k~~~~Ls~~el~~L 101 (169)
.|..|+|||+.+|..+++.+| +-..+.+-+.+|+..+
T Consensus 3 ~L~~I~gVG~~~a~~L~~~F~-s~~~i~~As~eeL~~v 39 (56)
T d1kfta_ 3 SLETIEGVGPKRRQMLLKYMG-GLQGLRNASVEEIAKV 39 (56)
T ss_dssp GGGGCTTCSSSHHHHHHHHHS-CHHHHHHCCHHHHTTS
T ss_pred CcccCCCccHHHHHHHHHHhC-CHHHHHHhhHHHHHhc
Confidence 489999999999999999988 4333444455555544
No 14
>d2fmpa2 a.60.12.1 (A:92-148) DNA polymerase beta {Human (Homo sapiens) [TaxId: 9606]}
Probab=91.81 E-value=0.031 Score=35.56 Aligned_cols=36 Identities=17% Similarity=0.364 Sum_probs=25.8
Q ss_pred eeccccccCHHHHHHHHHHcCCC--cc-c--cCCCCHHHHHH
Q 030930 64 SLQYIHGVGRTRARQILVDLKME--NK-I--TKDMSEEELIT 100 (169)
Q Consensus 64 ALt~I~GIG~~~A~~Ic~~lgi~--~k-~--~~~Ls~~el~~ 100 (169)
.|++|||||+.+|..+.++ |+. .. + ...||+.|..=
T Consensus 8 ~l~~I~GvGp~~A~~l~~~-Gi~ti~dLr~~~~~Lt~~Q~iG 48 (57)
T d2fmpa2 8 FLTRVSGIGPSAARKFVDE-GIKTLEDLRKNEDKLNHHQRIG 48 (57)
T ss_dssp HHTTSTTCCHHHHHHHHHT-TCCSHHHHHTCGGGSCHHHHHH
T ss_pred HHhccccccHHHHHHHHHh-CCCCHHHHHhhhhhCCHHHHHH
Confidence 5799999999999999875 986 22 1 23466666443
No 15
>d2a1jb1 a.60.2.5 (B:219-296) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=91.65 E-value=0.024 Score=37.40 Aligned_cols=40 Identities=18% Similarity=0.230 Sum_probs=28.1
Q ss_pred EeEeeccccccCHHHHHHHHHHcCCCccccCCCCHHHHHHH
Q 030930 61 IEYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITI 101 (169)
Q Consensus 61 i~~ALt~I~GIG~~~A~~Ic~~lgi~~k~~~~Ls~~el~~L 101 (169)
+..+|+.|+|||+..|..+++.+| +-..+..-+.+|+..+
T Consensus 17 ~~~~L~~I~gIg~~~a~~L~~~F~-s~~~i~~A~~eeL~~i 56 (78)
T d2a1jb1 17 VTECLTTVKSVNKTDSQTLLTTFG-SLEQLIAASREDLALC 56 (78)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHHS-SHHHHHSCCHHHHHTS
T ss_pred HHHHhcCCCCcCHHHHHHHHHHhC-CcHHHHhhhHHHHHHh
Confidence 457899999999999999999988 3222333345554433
No 16
>d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]}
Probab=90.66 E-value=0.069 Score=33.60 Aligned_cols=38 Identities=24% Similarity=0.319 Sum_probs=29.6
Q ss_pred eeccccccCHHHHHHHHHHcCCCccccCCCCHHHHHHHH
Q 030930 64 SLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITIR 102 (169)
Q Consensus 64 ALt~I~GIG~~~A~~Ic~~lgi~~k~~~~Ls~~el~~L~ 102 (169)
-|.+|+|||...+..+++.+| +-..+.+.|.+|+..+.
T Consensus 4 ~L~~iPGIg~~~~~~Ll~~f~-Si~~l~~As~~eL~~v~ 41 (62)
T d2a1ja1 4 FLLKMPGVNAKNCRSLMHHVK-NIAELAALSQDELTSIL 41 (62)
T ss_dssp HHHTSTTCCHHHHHHHHHHCS-SHHHHHTCCHHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHhc-cHHHHHhCCHHHHHHCc
Confidence 378999999999999999887 12235777888877774
No 17
>d1jmsa3 a.60.12.1 (A:243-302) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=90.33 E-value=0.049 Score=34.87 Aligned_cols=39 Identities=13% Similarity=0.097 Sum_probs=27.9
Q ss_pred eEeeccccccCHHHHHHHHHHcCCC--cc-c--c-CCCCHHHHHHH
Q 030930 62 EYSLQYIHGVGRTRARQILVDLKME--NK-I--T-KDMSEEELITI 101 (169)
Q Consensus 62 ~~ALt~I~GIG~~~A~~Ic~~lgi~--~k-~--~-~~Ls~~el~~L 101 (169)
...|++|||||+.+|....++ |+. .. + . ..||+.|.--|
T Consensus 7 l~~f~~I~GvGp~~A~~l~~~-Gi~ti~dL~~~~~~~Lt~~Q~iGL 51 (60)
T d1jmsa3 7 FKLFTSVFGVGLKTAEKWFRM-GFRTLSKIQSDKSLRFTQMQKAGF 51 (60)
T ss_dssp HHHHHTSTTCCHHHHHHHHHT-TCCSHHHHHHCSSCCCCHHHHHHH
T ss_pred HHHHhccccccHHHHHHHHHh-CCCCHHHHHhcCcccCCHHHHHHH
Confidence 346899999999999999877 986 22 1 1 24777775444
No 18
>d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Probab=89.50 E-value=0.024 Score=36.61 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=20.8
Q ss_pred eEeeccccccCHHHHHHHHHHcC
Q 030930 62 EYSLQYIHGVGRTRARQILVDLK 84 (169)
Q Consensus 62 ~~ALt~I~GIG~~~A~~Ic~~lg 84 (169)
.+.|..|+|||..+|..+++.+|
T Consensus 9 ~~~L~~I~gIG~~~a~~L~~~f~ 31 (68)
T d1x2ia1 9 RLIVEGLPHVSATLARRLLKHFG 31 (68)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHC
T ss_pred HHHHcCCCCcCHHHHHHHHHHcC
Confidence 35689999999999999999987
No 19
>d2axtu1 a.60.12.2 (U:37-134) Photosystem II 12 kDa extrinsic protein PsbU {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=89.23 E-value=0.1 Score=36.41 Aligned_cols=56 Identities=16% Similarity=0.199 Sum_probs=43.3
Q ss_pred CCCCeEEeEeeccccccCHHHHHHHHHHcCCCc----cccCCCCHHHHHHHHHHHhhccc
Q 030930 55 IPNNKRIEYSLQYIHGVGRTRARQILVDLKMEN----KITKDMSEEELITIRDEVSKYMI 110 (169)
Q Consensus 55 i~~~K~i~~ALt~I~GIG~~~A~~Ic~~lgi~~----k~~~~Ls~~el~~L~~~l~~~~I 110 (169)
|+-|..-...|+.++|||+..|.+|++.=.+.+ ..+.-+++.+++.|..+++.|.+
T Consensus 19 idlN~As~~eL~~lpGIg~~~A~~Iv~~gpf~s~edL~~V~GIg~~~~e~lk~yl~~f~~ 78 (98)
T d2axtu1 19 IDLNNTNIAAFIQYRGLYPTLAKLIVKNAPYESVEDVLNIPGLTERQKQILRENLEHFTV 78 (98)
T ss_dssp EESSSSCGGGGTTSTTCTHHHHHHHHHSCCCSSGGGGGGCTTCCTTHHHHHHHHGGGEEC
T ss_pred eecccccHHHHHHhhhhcHHHHHHHHHcCCcCCHHHHhhCCCCCHHHHHHHHHHHhccee
Confidence 444555677899999999999999997544431 23688999999999999987643
No 20
>d1bvsa2 a.60.2.1 (A:64-134) DNA helicase RuvA subunit, middle domain {Mycobacterium leprae [TaxId: 1769]}
Probab=89.01 E-value=0.069 Score=35.19 Aligned_cols=21 Identities=38% Similarity=0.676 Sum_probs=17.9
Q ss_pred EeeccccccCHHHHHHHHHHc
Q 030930 63 YSLQYIHGVGRTRARQILVDL 83 (169)
Q Consensus 63 ~ALt~I~GIG~~~A~~Ic~~l 83 (169)
.+|++++|||+.+|.+|+-.|
T Consensus 44 ~~L~~vpGIG~KtA~rIi~eL 64 (71)
T d1bvsa2 44 ASLTRVPGIGRRGAERIVLEL 64 (71)
T ss_dssp HHHHTSTTCCHHHHHHHHHHS
T ss_pred HHhhcCCCCCHHHHHHHHHHH
Confidence 468999999999999998655
No 21
>d1ixra1 a.60.2.1 (A:63-135) DNA helicase RuvA subunit, middle domain {Thermus thermophilus [TaxId: 274]}
Probab=88.18 E-value=0.086 Score=34.89 Aligned_cols=22 Identities=41% Similarity=0.529 Sum_probs=18.5
Q ss_pred EeeccccccCHHHHHHHHHHcC
Q 030930 63 YSLQYIHGVGRTRARQILVDLK 84 (169)
Q Consensus 63 ~ALt~I~GIG~~~A~~Ic~~lg 84 (169)
.+|++++|||..+|.+|+-.|.
T Consensus 45 ~~L~~vpGIG~KtA~rIi~eLk 66 (73)
T d1ixra1 45 RLLTSASGVGRRLAERIALELK 66 (73)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHT
T ss_pred HHhhcCCCCCHHHHHHHHHHHH
Confidence 3688999999999999996653
No 22
>d2i0za2 e.74.1.1 (A:193-361) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}
Probab=87.51 E-value=0.3 Score=35.54 Aligned_cols=53 Identities=13% Similarity=0.173 Sum_probs=43.3
Q ss_pred CCCeEEeEeeccccccCHHHHHHHHHHcCCC-ccccCCCCHHHHHHHHHHHhhccc
Q 030930 56 PNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVSKYMI 110 (169)
Q Consensus 56 ~~~K~i~~ALt~I~GIG~~~A~~Ic~~lgi~-~k~~~~Ls~~el~~L~~~l~~~~I 110 (169)
.+++.+...|.. -+..+.+..+|+.+|++ ++..++|+++|+.+|...|.+|.+
T Consensus 102 ~~~~~~~~~l~~--~lp~~l~~~ll~~~~i~~~~~~~~ls~~~~~~L~~~Lk~~~l 155 (169)
T d2i0za2 102 DPKKGIKNVLKG--YVPERYFLFLLEKNEIDGSEQAGQVSHEKIRALVKDFKEFTV 155 (169)
T ss_dssp STTSBHHHHTTT--SSCHHHHHHHHHHTTCCTTSBGGGSCHHHHHHHHHHHHHEEE
T ss_pred ccchhHhhhccc--ccchHHHHHHHHHcCCcccCCHHHCCHHHHHHHHHHHhCCEe
Confidence 345566666655 37889999999999999 677899999999999999988643
No 23
>d1cuka2 a.60.2.1 (A:65-142) DNA helicase RuvA subunit, middle domain {Escherichia coli [TaxId: 562]}
Probab=86.40 E-value=0.12 Score=34.57 Aligned_cols=21 Identities=24% Similarity=0.586 Sum_probs=17.5
Q ss_pred EeeccccccCHHHHHHHHHHc
Q 030930 63 YSLQYIHGVGRTRARQILVDL 83 (169)
Q Consensus 63 ~ALt~I~GIG~~~A~~Ic~~l 83 (169)
-+|++++|||+++|.+|+-.|
T Consensus 44 ~~L~~vpGIG~KtA~rIi~eL 64 (78)
T d1cuka2 44 GALVKLPGIGKKTAERLIVEM 64 (78)
T ss_dssp HHHHTSTTCCHHHHHHHHHHH
T ss_pred HHhhcCCCCCHHHHHHHHHHH
Confidence 368899999999999998655
No 24
>d2gqfa2 e.74.1.1 (A:195-342) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}
Probab=84.90 E-value=0.22 Score=35.85 Aligned_cols=53 Identities=6% Similarity=0.134 Sum_probs=43.7
Q ss_pred CCCeEEeEeeccccccCHHHHHHHHHHcCCCccccCCCCHHHHHHHHHHHhhccc
Q 030930 56 PNNKRIEYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITIRDEVSKYMI 110 (169)
Q Consensus 56 ~~~K~i~~ALt~I~GIG~~~A~~Ic~~lgi~~k~~~~Ls~~el~~L~~~l~~~~I 110 (169)
.+++.|.-.|..+ +-++.+..+|+..++.++...+|+++|+.+|.+.+.+|.+
T Consensus 84 ~~kk~i~~~L~~~--lPkrl~~~ll~~~~~~~~~~~~lsk~~~~~L~~~Lk~~~~ 136 (148)
T d2gqfa2 84 SPKQMLKTILVRL--LPKKLVELWIEQGIVQDEVIANISKVRVKNLVDFIHHWEF 136 (148)
T ss_dssp CTTSBHHHHHTTT--SCHHHHHHHHHTTSSCCCBGGGCCHHHHHHHHHHHHCEEE
T ss_pred hhhhhHHHHHHHH--hHHHHHHHHHHHcCcccchHHHCCHHHHHHHHHHHhCCEE
Confidence 5567777777665 7899999999987776777899999999999999987643
No 25
>d1vdda_ e.49.1.1 (A:) Recombination protein RecR {Deinococcus radiodurans [TaxId: 1299]}
Probab=79.43 E-value=0.64 Score=35.75 Aligned_cols=72 Identities=17% Similarity=0.302 Sum_probs=47.6
Q ss_pred EeEeeccccccCHHHHHHHHHHcCCCccccCCCCHHHHHHHHHHHhhc------------ccchH-------HHH-----
Q 030930 61 IEYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITIRDEVSKY------------MIEGD-------LRR----- 116 (169)
Q Consensus 61 i~~ALt~I~GIG~~~A~~Ic~~lgi~~k~~~~Ls~~el~~L~~~l~~~------------~Ie~d-------Lr~----- 116 (169)
+..+|++.+|||+++|.++.-.+= ...++++..|.+.|.+. ..+++ -.|
T Consensus 10 LI~~l~kLPGIG~KsA~Rla~~LL-------~~~~~~~~~l~~~l~~~~~~I~~C~~C~~l~e~~~C~iC~d~~Rd~~~i 82 (199)
T d1vdda_ 10 LIRELSRLPGIGPKSAQRLAFHLF-------EQPREDIERLASALLEAKRDLHVCPICFNITDAEKCDVCADPSRDQRTI 82 (199)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHHHS-------SSCHHHHHHHHHHHHHHHHHCEECSSSCCEESSSSCHHHHCSSSCTTEE
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHHHHhhCCCCCCCccccCCCcccccCcCCCcceE
Confidence 445789999999999999986552 33566777776666531 00100 000
Q ss_pred ---HHHHHHHHHHhhhhcccCccCCC
Q 030930 117 ---FNALAIRRLKEIQCYRGIRHIQG 139 (169)
Q Consensus 117 ---~~~~nI~rL~~I~sYRG~RH~~G 139 (169)
..-.|+.-+-+.+.|+|+=|.+|
T Consensus 83 CVVE~~~Dl~~iE~t~~y~G~YhVL~ 108 (199)
T d1vdda_ 83 CVVEEPGDVIALERSGEYRGLYHVLH 108 (199)
T ss_dssp EEESSHHHHHHTTTTSSCCSEEEECS
T ss_pred EEEecHHHHHHHHhcccchhhhhhhc
Confidence 01357777888899999999874
No 26
>d2duya1 a.60.2.7 (A:11-75) Uncharacterized protein TTHA1967 {Thermus thermophilus [TaxId: 274]}
Probab=71.18 E-value=1.5 Score=27.46 Aligned_cols=48 Identities=21% Similarity=0.219 Sum_probs=34.0
Q ss_pred CeEEeEeeccccccCHHHHHHHHHHcCCCc----cccCCCCHHHHHHHHHHH
Q 030930 58 NKRIEYSLQYIHGVGRTRARQILVDLKMEN----KITKDMSEEELITIRDEV 105 (169)
Q Consensus 58 ~K~i~~ALt~I~GIG~~~A~~Ic~~lgi~~----k~~~~Ls~~el~~L~~~l 105 (169)
|..-...|..++|||..+|..|.+.=.+.+ ..+.-+++..+++|..+|
T Consensus 12 NtA~~~eL~~lpgig~~~A~~Iv~~R~f~s~edL~~v~gi~~~~~~~i~~~l 63 (65)
T d2duya1 12 NEASLEELMALPGIGPVLARRIVEGRPYARVEDLLKVKGIGPATLERLRPYL 63 (65)
T ss_dssp TTCCHHHHTTSTTCCHHHHHHHHHTCCCSSGGGGGGSTTCCHHHHHHHGGGE
T ss_pred ccCCHHHHHHCCCCCHHHHHHHHHcCCCCCHHHHHhCCCCCHHHHHHHHHHc
Confidence 444456789999999999999997655441 224567777777776554
No 27
>d1bvsa2 a.60.2.1 (A:64-134) DNA helicase RuvA subunit, middle domain {Mycobacterium leprae [TaxId: 1769]}
Probab=66.98 E-value=1.3 Score=28.71 Aligned_cols=27 Identities=22% Similarity=0.225 Sum_probs=22.0
Q ss_pred eEEeEeeccccccCHHHHHHHHHHcCC
Q 030930 59 KRIEYSLQYIHGVGRTRARQILVDLKM 85 (169)
Q Consensus 59 K~i~~ALt~I~GIG~~~A~~Ic~~lgi 85 (169)
+.++..|.++.|||..+|..|+..++.
T Consensus 5 r~~F~~Li~V~GIGpK~Al~iLs~~~~ 31 (71)
T d1bvsa2 5 RDLFLALLSVSGVGPRLAMATLAVHDA 31 (71)
T ss_dssp HHHHHHHHTSSSCCHHHHHHHHHHSCH
T ss_pred HHHHHHHhccCCcCHHHHHHHHHhCCH
Confidence 345567899999999999999977654
No 28
>d1cuka2 a.60.2.1 (A:65-142) DNA helicase RuvA subunit, middle domain {Escherichia coli [TaxId: 562]}
Probab=65.82 E-value=1.3 Score=29.17 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=20.9
Q ss_pred EEeEeeccccccCHHHHHHHHHHcC
Q 030930 60 RIEYSLQYIHGVGRTRARQILVDLK 84 (169)
Q Consensus 60 ~i~~ALt~I~GIG~~~A~~Ic~~lg 84 (169)
.++..|.++.|||..+|..|+..++
T Consensus 6 ~~F~~Li~V~GIGpK~Al~iLs~~~ 30 (78)
T d1cuka2 6 TLFKELIKTNGVGPKLALAILSGMS 30 (78)
T ss_dssp HHHHHHHHSSSCCHHHHHHHHHHSC
T ss_pred HHHHHHHccCCccHHHHHHHHHhCC
Confidence 3455789999999999999997665
No 29
>d1ixra1 a.60.2.1 (A:63-135) DNA helicase RuvA subunit, middle domain {Thermus thermophilus [TaxId: 274]}
Probab=65.30 E-value=1.4 Score=28.62 Aligned_cols=25 Identities=28% Similarity=0.263 Sum_probs=20.8
Q ss_pred EEeEeeccccccCHHHHHHHHHHcC
Q 030930 60 RIEYSLQYIHGVGRTRARQILVDLK 84 (169)
Q Consensus 60 ~i~~ALt~I~GIG~~~A~~Ic~~lg 84 (169)
.++..|.+|.|||.++|..|+..++
T Consensus 7 ~lF~~Li~V~GIGpk~Al~iLs~~~ 31 (73)
T d1ixra1 7 ALFELLLSVSGVGPKVALALLSALP 31 (73)
T ss_dssp HHHHHHHSSSCCCHHHHHHHHHHSC
T ss_pred HHHHHHhccCCcCHHHHHHHHHHcc
Confidence 3455788999999999999997665
No 30
>d1tdha1 a.156.1.2 (A:132-246) Endonuclease VIII-like 1 (NEIL1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=63.80 E-value=0.49 Score=33.44 Aligned_cols=47 Identities=19% Similarity=0.251 Sum_probs=34.4
Q ss_pred CeEEeEee---ccccccCHHHHHHHHHHcCCCccc-cCCCCHHHHHHHHHH
Q 030930 58 NKRIEYSL---QYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDE 104 (169)
Q Consensus 58 ~K~i~~AL---t~I~GIG~~~A~~Ic~~lgi~~k~-~~~Ls~~el~~L~~~ 104 (169)
+++|..+| .-+-|||..++..||-.++|+|.+ +.+|+++|..+|.+.
T Consensus 27 ~~~i~~~LldQ~~~aGiGN~~~~EiLf~a~i~P~~~~~~l~~~~~~~l~~~ 77 (115)
T d1tdha1 27 DRPICEALLDQRFFNGIGNYLRAEILYRLKIPPFEKARSVLEALQQHRPSP 77 (115)
T ss_dssp GSBHHHHTTCTTTSTTCCHHHHHHHHHHHTCCTTSBHHHHHGGGC-----C
T ss_pred CCcHHHHHhccchhccccHHHHHHHHHHcCCCCCCchhhcCHHHHhHHHhh
Confidence 34555555 568899999999999999999655 699999999887553
No 31
>d1jmsa1 a.60.6.1 (A:148-242) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=58.85 E-value=3.4 Score=27.48 Aligned_cols=21 Identities=14% Similarity=-0.004 Sum_probs=18.0
Q ss_pred eeccccccCHHHHHHHHHHcC
Q 030930 64 SLQYIHGVGRTRARQILVDLK 84 (169)
Q Consensus 64 ALt~I~GIG~~~A~~Ic~~lg 84 (169)
.|.+|+|||..++..|..-+.
T Consensus 63 ~l~~i~GIGk~i~~kI~Eil~ 83 (95)
T d1jmsa1 63 DTEGIPCLGDKVKSIIEGIIE 83 (95)
T ss_dssp GGTTCSSCCHHHHHHHHHHHH
T ss_pred HHHhccchhHHHHHHHHHHHH
Confidence 488999999999999987664
No 32
>d1ul1x1 a.60.7.1 (X:218-357) Flap endonuclease-1 (Fen-1 nuclease) {Human (Homo sapiens) [TaxId: 9606]}
Probab=58.72 E-value=2.4 Score=29.55 Aligned_cols=20 Identities=30% Similarity=0.506 Sum_probs=17.7
Q ss_pred eccccccCHHHHHHHHHHcC
Q 030930 65 LQYIHGVGRTRARQILVDLK 84 (169)
Q Consensus 65 Lt~I~GIG~~~A~~Ic~~lg 84 (169)
+..|+|||..+|..++++.|
T Consensus 18 ~pgv~gIG~ktA~kli~~~~ 37 (140)
T d1ul1x1 18 CESIRGIGPKRAVDLIQKHK 37 (140)
T ss_dssp SCCCTTCCHHHHHHHHHHSS
T ss_pred CCCCCCccHHHHHHHHHHhC
Confidence 34799999999999999887
No 33
>d1rxwa1 a.60.7.1 (A:220-324) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=58.57 E-value=2.4 Score=28.60 Aligned_cols=19 Identities=21% Similarity=0.335 Sum_probs=17.3
Q ss_pred ccccccCHHHHHHHHHHcC
Q 030930 66 QYIHGVGRTRARQILVDLK 84 (169)
Q Consensus 66 t~I~GIG~~~A~~Ic~~lg 84 (169)
..|+|||..+|..+.++.|
T Consensus 19 pGV~GIG~ktA~kli~~~g 37 (105)
T d1rxwa1 19 EGVKGVGVKKALNYIKTYG 37 (105)
T ss_dssp CCCTTCCHHHHHHHHHHHS
T ss_pred CCCCCcCHHHHHHHHHHhC
Confidence 4689999999999999987
No 34
>d1kg2a_ a.96.1.2 (A:) Catalytic domain of MutY {Escherichia coli [TaxId: 562]}
Probab=58.56 E-value=1.8 Score=32.75 Aligned_cols=21 Identities=33% Similarity=0.371 Sum_probs=18.4
Q ss_pred EeeccccccCHHHHHHHHHHc
Q 030930 63 YSLQYIHGVGRTRARQILVDL 83 (169)
Q Consensus 63 ~ALt~I~GIG~~~A~~Ic~~l 83 (169)
..|.+++|||+.+|..|+..+
T Consensus 109 ~~L~~LpGVG~kTA~~il~~a 129 (224)
T d1kg2a_ 109 EEVAALPGVGRSTAGAILSLS 129 (224)
T ss_dssp HHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhHHHHHHh
Confidence 569999999999999998653
No 35
>d1xo1a1 a.60.7.1 (A:186-290) T5 5'-exonuclease {Bacteriophage T5 [TaxId: 10726]}
Probab=57.51 E-value=2.7 Score=28.51 Aligned_cols=20 Identities=20% Similarity=0.536 Sum_probs=17.9
Q ss_pred eccccccCHHHHHHHHHHcC
Q 030930 65 LQYIHGVGRTRARQILVDLK 84 (169)
Q Consensus 65 Lt~I~GIG~~~A~~Ic~~lg 84 (169)
+..|+|||..+|..++...|
T Consensus 21 ipGV~GiG~KtA~kli~~~g 40 (105)
T d1xo1a1 21 IRGVEGIGAKRGYNIIREFG 40 (105)
T ss_dssp BCCCTTCCHHHHHHHHHHHC
T ss_pred CcCcCCcCHHHHHHHHHHcc
Confidence 45689999999999999887
No 36
>d3bzka1 a.60.2.6 (A:474-563) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]}
Probab=56.90 E-value=4.1 Score=26.88 Aligned_cols=45 Identities=18% Similarity=0.180 Sum_probs=32.6
Q ss_pred EeEeeccccccCHHHHHHHHHHc----CCCc----cccCCCCHHHHHHHHHHH
Q 030930 61 IEYSLQYIHGVGRTRARQILVDL----KMEN----KITKDMSEEELITIRDEV 105 (169)
Q Consensus 61 i~~ALt~I~GIG~~~A~~Ic~~l----gi~~----k~~~~Ls~~el~~L~~~l 105 (169)
-...|.+++|||+.+|..|.+.- ++.+ +.+..+++.-++++..+|
T Consensus 33 s~~~L~~lpGig~~~A~~Iv~~R~~~G~f~s~edL~~v~gi~~k~~e~i~~~l 85 (90)
T d3bzka1 33 SAALLARISGLNSTLAQNIVAHRDANGAFRTRDELKKVSRLGEKTFEQAAGFL 85 (90)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHHHHHHCSCSSSGGGGGSTTCCHHHHHHHHTTE
T ss_pred CHHHHhHCCCCCHHHHHHHHHHHHHcCCCCCHHHHhhCCCCCHHHHHHhcCCE
Confidence 35679999999999999999654 4431 235777887777776544
No 37
>d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=56.15 E-value=1.9 Score=26.20 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=17.7
Q ss_pred eeccccccCHHHHHHHHHHc
Q 030930 64 SLQYIHGVGRTRARQILVDL 83 (169)
Q Consensus 64 ALt~I~GIG~~~A~~Ic~~l 83 (169)
.|..|+|||...|..|.+-+
T Consensus 35 eL~~v~GIg~~~A~~I~~~l 54 (56)
T d1kfta_ 35 EIAKVPGISQGLAEKIFWSL 54 (56)
T ss_dssp HHTTSSSTTSHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHH
Confidence 57899999999999998765
No 38
>d2csba3 a.60.2.4 (A:410-464) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=55.72 E-value=4.7 Score=24.31 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=19.3
Q ss_pred eeccccccCHHHHHHHHHHcC
Q 030930 64 SLQYIHGVGRTRARQILVDLK 84 (169)
Q Consensus 64 ALt~I~GIG~~~A~~Ic~~lg 84 (169)
.||+-.|+|+.+|..+++.+|
T Consensus 3 eltkkegvgrktaerllrafg 23 (55)
T d2csba3 3 ELTKKEGVGRKTAERLLRAFG 23 (55)
T ss_dssp HHHTSTTCCHHHHHHHHHHHS
T ss_pred hhhhhccccHhHHHHHHHHhC
Confidence 378889999999999999999
No 39
>d1keaa_ a.96.1.2 (A:) Thymine-DNA glycosylase {Archaeon Methanobacterium thermoformicicum [TaxId: 145262]}
Probab=55.45 E-value=2.3 Score=32.15 Aligned_cols=22 Identities=14% Similarity=0.261 Sum_probs=19.3
Q ss_pred eEeeccccccCHHHHHHHHHHc
Q 030930 62 EYSLQYIHGVGRTRARQILVDL 83 (169)
Q Consensus 62 ~~ALt~I~GIG~~~A~~Ic~~l 83 (169)
...|.+++|||+.+|..|+..+
T Consensus 112 ~~~L~~LpGVG~kTA~~il~~~ 133 (217)
T d1keaa_ 112 RKAILDLPGVGKYTCAAVMCLA 133 (217)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHT
T ss_pred hHHHHHHHhhhhhhhHHHHHHh
Confidence 4579999999999999999864
No 40
>d2noha1 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=55.38 E-value=2.1 Score=31.34 Aligned_cols=42 Identities=17% Similarity=0.152 Sum_probs=26.8
Q ss_pred EeEeeccccccCHHHHHHHHHHcCCCccccCCCCHHHHHHHHHH
Q 030930 61 IEYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITIRDE 104 (169)
Q Consensus 61 i~~ALt~I~GIG~~~A~~Ic~~lgi~~k~~~~Ls~~el~~L~~~ 104 (169)
+.-.|++++|||+.+|..++-..-=++...- + |.-+.++..-
T Consensus 101 ~~~~L~~l~GIG~wTA~~il~~~~~~~d~fp-v-D~~v~R~~~r 142 (190)
T d2noha1 101 AHKALCILPGVGTQVADCICLMALDKPQAVP-V-DVHMWHIAQR 142 (190)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHHSCCTTCCC-C-CHHHHHHHHH
T ss_pred HHHHHHHcCCchHHHHHHHHHHHcCCCCeEe-e-cHHHHHHHHH
Confidence 4556999999999999998765322233221 2 5555555443
No 41
>d2fmpa1 a.60.6.1 (A:10-91) DNA polymerase beta, N-terminal (8 kD)-domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=55.20 E-value=2.4 Score=27.45 Aligned_cols=21 Identities=29% Similarity=0.251 Sum_probs=18.2
Q ss_pred eeccccccCHHHHHHHHHHcC
Q 030930 64 SLQYIHGVGRTRARQILVDLK 84 (169)
Q Consensus 64 ALt~I~GIG~~~A~~Ic~~lg 84 (169)
.|++|+|||..++..|..-+.
T Consensus 49 ~l~~i~GIGk~ia~kI~E~~~ 69 (82)
T d2fmpa1 49 EAKKLPGVGTKIAEKIDEFLA 69 (82)
T ss_dssp HHHTSTTCCHHHHHHHHHHHH
T ss_pred HHhcCCCccHHHHHHHHHHHH
Confidence 589999999999999987654
No 42
>d1a77a1 a.60.7.1 (A:209-316) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=54.84 E-value=2.5 Score=28.47 Aligned_cols=18 Identities=22% Similarity=0.314 Sum_probs=16.2
Q ss_pred cccccCHHHHHHHHHHcC
Q 030930 67 YIHGVGRTRARQILVDLK 84 (169)
Q Consensus 67 ~I~GIG~~~A~~Ic~~lg 84 (169)
.|+|||..+|..+.+..|
T Consensus 21 GV~GIGpktA~klIk~~g 38 (108)
T d1a77a1 21 GVKGIGFKRAYELVRSGV 38 (108)
T ss_dssp CSTTCCHHHHHHHHHTTC
T ss_pred CCCCcCHHHHHHHHHHcC
Confidence 699999999999998766
No 43
>d1rrqa1 a.96.1.2 (A:9-229) Catalytic domain of MutY {Bacillus stearothermophilus [TaxId: 1422]}
Probab=54.73 E-value=2.3 Score=32.07 Aligned_cols=21 Identities=19% Similarity=0.233 Sum_probs=18.3
Q ss_pred EeeccccccCHHHHHHHHHHc
Q 030930 63 YSLQYIHGVGRTRARQILVDL 83 (169)
Q Consensus 63 ~ALt~I~GIG~~~A~~Ic~~l 83 (169)
..|.+++|||+.+|..|+..+
T Consensus 107 ~~Ll~LpGIG~kTA~~il~~a 127 (221)
T d1rrqa1 107 DEFSRLKGVGPYTVGAVLSLA 127 (221)
T ss_dssp HHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHH
Confidence 479999999999999999553
No 44
>d1pu6a_ a.96.1.5 (A:) 3-Methyladenine DNA glycosylase III (MagIII) {Helicobacter pylori [TaxId: 210]}
Probab=54.04 E-value=1.9 Score=32.70 Aligned_cols=42 Identities=14% Similarity=0.112 Sum_probs=27.8
Q ss_pred EEeEeeccccccCHHHHHHHHHHcCCC-ccccCCCCHHHHHHHHHHH
Q 030930 60 RIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEV 105 (169)
Q Consensus 60 ~i~~ALt~I~GIG~~~A~~Ic~~lgi~-~k~~~~Ls~~el~~L~~~l 105 (169)
...-.|++++|||+.+|..|+... ++ +... -|..+.++..-+
T Consensus 117 ~~~~~L~~lpGIG~kTA~~vl~~~-~~~~~~~---vD~hv~Rv~~Rl 159 (217)
T d1pu6a_ 117 VTREWLLDQKGIGKESADAILCYA-CAKEVMV---VDKYSYLFLKKL 159 (217)
T ss_dssp CCHHHHHTSTTCCHHHHHHHHHHT-TCCSCCC---CCHHHHHHHHHT
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHH-cCCeeee---cChHHHHHHHHh
Confidence 356689999999999999998654 44 3222 144555554433
No 45
>d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Probab=52.87 E-value=2.9 Score=25.56 Aligned_cols=20 Identities=20% Similarity=0.416 Sum_probs=17.1
Q ss_pred eeccccccCHHHHHHHHHHc
Q 030930 64 SLQYIHGVGRTRARQILVDL 83 (169)
Q Consensus 64 ALt~I~GIG~~~A~~Ic~~l 83 (169)
.|.+|+|||..+|.+|+..+
T Consensus 33 eL~~i~Gi~~~~A~~i~~~a 52 (60)
T d2i1qa1 33 ELTDIEGISEKAAAKMIMGA 52 (60)
T ss_dssp HHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHH
Confidence 37899999999999998654
No 46
>d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Probab=51.85 E-value=3.3 Score=25.81 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=19.3
Q ss_pred eeccccccCHHHHHHHHHHcCC
Q 030930 64 SLQYIHGVGRTRARQILVDLKM 85 (169)
Q Consensus 64 ALt~I~GIG~~~A~~Ic~~lgi 85 (169)
.|..|.|||..+|..|.+.+.-
T Consensus 43 eL~~i~GIG~~~A~~I~~~~~~ 64 (68)
T d1x2ia1 43 ELMKVEGIGEKIAKEIRRVITA 64 (68)
T ss_dssp HHTTSTTCCHHHHHHHHHHHHS
T ss_pred HHHhCCCcCHHHHHHHHHHHhc
Confidence 5899999999999999987653
No 47
>d1orna_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]}
Probab=51.50 E-value=2.9 Score=31.32 Aligned_cols=27 Identities=30% Similarity=0.487 Sum_probs=20.9
Q ss_pred cCCCCeEEeEeeccccccCHHHHHHHHHHc
Q 030930 54 EIPNNKRIEYSLQYIHGVGRTRARQILVDL 83 (169)
Q Consensus 54 ni~~~K~i~~ALt~I~GIG~~~A~~Ic~~l 83 (169)
++|.+ ...|.+++|||+.+|..|+.-+
T Consensus 104 ~vp~~---~~~L~~LpGVG~kTA~~il~~a 130 (214)
T d1orna_ 104 EVPRD---RDELMKLPGVGRKTANVVVSVA 130 (214)
T ss_dssp SCCSC---HHHHTTSTTCCHHHHHHHHHHH
T ss_pred CCCCC---HHHHHhCcCcccchHHHHHHHH
Confidence 45544 3469999999999999998653
No 48
>d2abka_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]}
Probab=50.39 E-value=2.8 Score=31.49 Aligned_cols=21 Identities=33% Similarity=0.506 Sum_probs=18.2
Q ss_pred eEeeccccccCHHHHHHHHHH
Q 030930 62 EYSLQYIHGVGRTRARQILVD 82 (169)
Q Consensus 62 ~~ALt~I~GIG~~~A~~Ic~~ 82 (169)
.-.|.+++|||+.+|..|+..
T Consensus 108 ~~~L~~LpGVG~~TA~~Il~~ 128 (211)
T d2abka_ 108 RAALEALPGVGRKTANVVLNT 128 (211)
T ss_dssp HHHHHHSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHhhchHHHHHHHHH
Confidence 456899999999999999874
No 49
>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}
Probab=49.35 E-value=3.9 Score=31.60 Aligned_cols=31 Identities=6% Similarity=0.245 Sum_probs=26.9
Q ss_pred HHHHHHcCCC-ccccCCCCHHHHHHHHHHHhh
Q 030930 77 RQILVDLKME-NKITKDMSEEELITIRDEVSK 107 (169)
Q Consensus 77 ~~Ic~~lgi~-~k~~~~Ls~~el~~L~~~l~~ 107 (169)
..+++.+||+ +.++.+||.+|+-+|.+.+++
T Consensus 219 ~~~l~~~~i~~~~R~e~Ls~~~~~~L~~~l~~ 250 (252)
T d1qyra_ 219 VEVLTGMGIDPAMRAENISVAQYCQMANYLAE 250 (252)
T ss_dssp HHHHHHTTCCTTSBGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCcccChhhCCHHHHHHHHHHHHh
Confidence 3578999999 778999999999999998853
No 50
>d1gm5a2 b.40.4.9 (A:106-285) RecG "wedge" domain {Thermotoga maritima [TaxId: 2336]}
Probab=48.69 E-value=3.7 Score=29.42 Aligned_cols=25 Identities=32% Similarity=0.667 Sum_probs=20.8
Q ss_pred EeEeeccccccCHHHHHHHHHHcCCC
Q 030930 61 IEYSLQYIHGVGRTRARQILVDLKME 86 (169)
Q Consensus 61 i~~ALt~I~GIG~~~A~~Ic~~lgi~ 86 (169)
+.-.|+.++|||+.+|..+ +++||+
T Consensus 8 l~~~i~~lkGvGpk~~~~L-~klgI~ 32 (180)
T d1gm5a2 8 LSTDIQYAKGVGPNRKKKL-KKLGIE 32 (180)
T ss_dssp SCCCSSSSSSCCHHHHHHH-HTTTCC
T ss_pred CCCChhhcCCcCHHHHHHH-HHhCCC
Confidence 3456789999999999888 578998
No 51
>d1mpga1 a.96.1.3 (A:100-282) 3-Methyladenine DNA glycosylase II (gene alkA or aidA) {Escherichia coli [TaxId: 562]}
Probab=46.24 E-value=3.6 Score=30.03 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.1
Q ss_pred EEeEeeccccccCHHHHHHHHH
Q 030930 60 RIEYSLQYIHGVGRTRARQILV 81 (169)
Q Consensus 60 ~i~~ALt~I~GIG~~~A~~Ic~ 81 (169)
.+...|++|+|||+-+|..++-
T Consensus 105 e~~~~L~~l~GIGpwTAd~ill 126 (183)
T d1mpga1 105 QAMKTLQTFPGIGRWTANYFAL 126 (183)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHH
T ss_pred HHHHHHHHhhcccHHHHHHHHH
Confidence 4567899999999999998874
No 52
>d1b43a1 a.60.7.1 (A:220-339) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=45.94 E-value=3.7 Score=28.36 Aligned_cols=20 Identities=30% Similarity=0.346 Sum_probs=17.4
Q ss_pred ccccccCHHHHHHHHHHcCC
Q 030930 66 QYIHGVGRTRARQILVDLKM 85 (169)
Q Consensus 66 t~I~GIG~~~A~~Ic~~lgi 85 (169)
..|+|||..+|..+.++.+=
T Consensus 20 ~gI~GIGpktAlklikk~~~ 39 (120)
T d1b43a1 20 GGIKGIGLKKALEIVRHSKD 39 (120)
T ss_dssp TCSTTCCHHHHHHHHHTCSS
T ss_pred ccCCCcCHHHHHHHHHHhCC
Confidence 35999999999999998773
No 53
>d1kx7a_ a.3.1.1 (A:) Mono-heme c-type cytochrome ScyA {Shewanella putrefaciens [TaxId: 24]}
Probab=45.47 E-value=5.8 Score=24.60 Aligned_cols=17 Identities=24% Similarity=0.305 Sum_probs=15.1
Q ss_pred CCCCHHHHHHHHHHHhh
Q 030930 91 KDMSEEELITIRDEVSK 107 (169)
Q Consensus 91 ~~Ls~~el~~L~~~l~~ 107 (169)
.+|||+|+..|..+|.+
T Consensus 63 ~~Lsd~ei~~v~~Yi~~ 79 (81)
T d1kx7a_ 63 TDCTDEDYKAAIEFMSK 79 (81)
T ss_dssp SSCCHHHHHHHHHHHSS
T ss_pred cCCCHHHHHHHHHHHHh
Confidence 68999999999999854
No 54
>d2edua1 a.60.2.7 (A:8-98) KIF22, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=45.00 E-value=11 Score=24.77 Aligned_cols=43 Identities=9% Similarity=0.183 Sum_probs=31.2
Q ss_pred eEeeccccccCHHHHHHHHHHc----CCCc----cccCCCCHHHHHHHHHH
Q 030930 62 EYSLQYIHGVGRTRARQILVDL----KMEN----KITKDMSEEELITIRDE 104 (169)
Q Consensus 62 ~~ALt~I~GIG~~~A~~Ic~~l----gi~~----k~~~~Ls~~el~~L~~~ 104 (169)
...|..++|||..+|..|...= ++.+ ..+..+++..+++|.+.
T Consensus 32 ~~eL~~lpgig~~~A~~II~yR~~~G~f~sledL~~V~Gi~~k~~eki~k~ 82 (91)
T d2edua1 32 ARDLRSLQRIGPKKAQLIVGWRELHGPFSQVEDLERVEGITGKQMESFLKA 82 (91)
T ss_dssp HHHHHHSTTCCHHHHHHHHHHHHHHCCCSSGGGGGGSTTCCHHHHHHHHHH
T ss_pred HHHHhhCCCCCHHHHHHHHHHHHHcCCCCCHHHHhcCCCCCHHHHHHHHHc
Confidence 3457899999999999999433 3331 23577888888888753
No 55
>d1im4a_ e.8.1.7 (A:) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=43.28 E-value=6.2 Score=29.28 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=19.6
Q ss_pred EeeccccccCHHHHHHHHHHcCCC
Q 030930 63 YSLQYIHGVGRTRARQILVDLKME 86 (169)
Q Consensus 63 ~ALt~I~GIG~~~A~~Ic~~lgi~ 86 (169)
..+++++|||++++..+ +.+||.
T Consensus 183 lpi~~i~GIG~~~~~~L-~~~Gi~ 205 (209)
T d1im4a_ 183 LDIDEIPGIGSVLARRL-NELGIQ 205 (209)
T ss_dssp CBGGGSTTCCHHHHHHH-HHTTCC
T ss_pred CCceeeCCchHHHHHHH-HHcCCc
Confidence 35799999999999876 778886
No 56
>d1jx4a2 e.8.1.7 (A:1-240) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus, DNA polymerase IV [TaxId: 2287]}
Probab=42.64 E-value=11 Score=28.27 Aligned_cols=36 Identities=17% Similarity=0.290 Sum_probs=24.5
Q ss_pred EeeccccccCHHHHHHHHHHcCCCc-cccCCCCHHHHH
Q 030930 63 YSLQYIHGVGRTRARQILVDLKMEN-KITKDMSEEELI 99 (169)
Q Consensus 63 ~ALt~I~GIG~~~A~~Ic~~lgi~~-k~~~~Ls~~el~ 99 (169)
..|.+++|||+.++..+ +.+||.+ .-+-.++.+++.
T Consensus 178 lpl~~l~GiG~~~~~~L-~~~Gi~t~gdl~~~~~~~L~ 214 (240)
T d1jx4a2 178 LDIADVPGIGNITAEKL-KKLGINKLVDTLSIEFDKLK 214 (240)
T ss_dssp SBGGGSTTCCHHHHHHH-HTTTCCBGGGGGSSCHHHHH
T ss_pred cchhhcCCCCHHHHHHH-HHhCCCcHHHHHcCCHHHHH
Confidence 44689999999999875 7889873 223444554443
No 57
>d1jiha2 e.8.1.7 (A:1-389) DNA polymerase eta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=41.82 E-value=5.4 Score=32.76 Aligned_cols=25 Identities=8% Similarity=0.311 Sum_probs=22.3
Q ss_pred EeeccccccCHHHHHHHHHHcCCCc
Q 030930 63 YSLQYIHGVGRTRARQILVDLKMEN 87 (169)
Q Consensus 63 ~ALt~I~GIG~~~A~~Ic~~lgi~~ 87 (169)
..+++|.|||..++.++++.+|+..
T Consensus 300 lpi~ki~GIG~k~~kkL~~~lgi~t 324 (389)
T d1jiha2 300 FEITSFWTLGGVLGKELIDVLDLPH 324 (389)
T ss_dssp CCGGGSGGGSSHHHHHHHHHTTCCS
T ss_pred CChhhcCCCCHHHHHHHHHHhCCCc
Confidence 3579999999999999999999874
No 58
>d1cc5a_ a.3.1.1 (A:) Cytochrome c5 {Azotobacter vinelandii [TaxId: 354]}
Probab=41.03 E-value=8 Score=23.93 Aligned_cols=17 Identities=29% Similarity=0.352 Sum_probs=14.8
Q ss_pred CCCCHHHHHHHHHHHhh
Q 030930 91 KDMSEEELITIRDEVSK 107 (169)
Q Consensus 91 ~~Ls~~el~~L~~~l~~ 107 (169)
..|||+|++.|..+|..
T Consensus 66 ~~Lsd~ei~~vv~Yi~~ 82 (83)
T d1cc5a_ 66 ADCSDDELKAAIGKMSG 82 (83)
T ss_dssp SSCCHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHhh
Confidence 57999999999998853
No 59
>d1ngna_ a.96.1.2 (A:) Mismatch-specific thymine glycosylase domain of the methyl-GpG binding protein mbd4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=40.22 E-value=6 Score=27.89 Aligned_cols=21 Identities=14% Similarity=0.131 Sum_probs=17.3
Q ss_pred EeeccccccCHHHHHHHHHHc
Q 030930 63 YSLQYIHGVGRTRARQILVDL 83 (169)
Q Consensus 63 ~ALt~I~GIG~~~A~~Ic~~l 83 (169)
-.|.+++|||+.+|..++--+
T Consensus 93 ~~l~~LpGVG~~tad~~~if~ 113 (144)
T d1ngna_ 93 RYPIELHGIGKYGNDSYRIFC 113 (144)
T ss_dssp SSGGGSTTCCHHHHHHHHHHT
T ss_pred hhHHhcCCccHHHHHHHHHHH
Confidence 468999999999999886544
No 60
>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.25 E-value=15 Score=28.56 Aligned_cols=32 Identities=19% Similarity=0.337 Sum_probs=26.7
Q ss_pred HHHHHHHcCCCccccCCCCHHHHHHHHHHHhh
Q 030930 76 ARQILVDLKMENKITKDMSEEELITIRDEVSK 107 (169)
Q Consensus 76 A~~Ic~~lgi~~k~~~~Ls~~el~~L~~~l~~ 107 (169)
...++..+|++++++.+||.+|+-+|...+++
T Consensus 241 i~~~l~~~g~~~~RaE~Ls~~~f~~L~~~l~~ 272 (278)
T d1zq9a1 241 IQQILTSTGFSDKRARSMDIDDFIRLLHGFNA 272 (278)
T ss_dssp HHHHHHHHTCTTCBGGGCCHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCcCChhhCCHHHHHHHHHHHHH
Confidence 45678888998888999999999999888865
No 61
>d2bcqa1 a.60.6.1 (A:252-327) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.70 E-value=6.4 Score=24.71 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=18.1
Q ss_pred eeccccccCHHHHHHHHHHcC
Q 030930 64 SLQYIHGVGRTRARQILVDLK 84 (169)
Q Consensus 64 ALt~I~GIG~~~A~~Ic~~lg 84 (169)
.|.+++|||..++..|-.-+.
T Consensus 47 ~l~~lpGiG~~i~~kI~Eil~ 67 (76)
T d2bcqa1 47 EACSIPGIGKRMAEKIIEILE 67 (76)
T ss_dssp HHHTSTTCCHHHHHHHHHHHH
T ss_pred HHhcCCCccHHHHHHHHHHHH
Confidence 488999999999999987664
No 62
>d1dgsa1 a.60.2.2 (A:401-581) NAD+-dependent DNA ligase, domain 3 {Thermus filiformis [TaxId: 276]}
Probab=36.42 E-value=13 Score=27.00 Aligned_cols=37 Identities=32% Similarity=0.410 Sum_probs=25.0
Q ss_pred EeeccccccCHHHHHHHHHHcCCCccccCCCCHHHHHHH
Q 030930 63 YSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITI 101 (169)
Q Consensus 63 ~ALt~I~GIG~~~A~~Ic~~lgi~~k~~~~Ls~~el~~L 101 (169)
+|| .|+|||..+|..+++.++ +-....+.+.+|+..|
T Consensus 108 ~aL-GI~~vG~~~Ak~La~~f~-sl~~l~~as~eeL~~I 144 (181)
T d1dgsa1 108 YAL-GLPGVGEVLARNLARRFG-TMDRLLEASLEELIEV 144 (181)
T ss_dssp HHT-TCSSCCHHHHHHHHHTTS-BHHHHTTCCHHHHHTS
T ss_pred HHH-HhhhhhHHHHHHHHHHhh-hhhhhhhhHHHHHhhc
Confidence 444 599999999999999875 1122344566666655
No 63
>d1zeta2 e.8.1.7 (A:27-299) DNA polymerase iota {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.21 E-value=7.7 Score=29.61 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=18.5
Q ss_pred eeccccccCHHHHHHHHHHcCCC
Q 030930 64 SLQYIHGVGRTRARQILVDLKME 86 (169)
Q Consensus 64 ALt~I~GIG~~~A~~Ic~~lgi~ 86 (169)
.+.+++|||..++..+ +.+||.
T Consensus 209 pv~~l~GiG~~~~~~L-~~~GI~ 230 (273)
T d1zeta2 209 HIKEIPGIGYKTAKCL-EALGIN 230 (273)
T ss_dssp SGGGSTTCCHHHHHHH-HTTTCC
T ss_pred chHHhcCCCHHHHHHH-HHhCCC
Confidence 5789999999999876 668886
No 64
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.94 E-value=17 Score=22.24 Aligned_cols=39 Identities=21% Similarity=0.329 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHHHHHhhcc---------cchHHHHHHHHHHHHHHhhh
Q 030930 91 KDMSEEELITIRDEVSKYM---------IEGDLRRFNALAIRRLKEIQ 129 (169)
Q Consensus 91 ~~Ls~~el~~L~~~l~~~~---------Ie~dLr~~~~~nI~rL~~I~ 129 (169)
.+-|++|...|.+.|..|. |...+.+...+-+.+.+.++
T Consensus 2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~vgkt~~ev~~~~k~l~ 49 (59)
T d2cqqa1 2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELGRSVTDVTTKAKQLK 49 (59)
T ss_dssp CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4678999999999998874 33444444555666665554
No 65
>d2csba4 a.60.2.4 (A:465-519) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=31.90 E-value=12 Score=22.40 Aligned_cols=38 Identities=24% Similarity=0.424 Sum_probs=27.8
Q ss_pred eeccccccCHHHHHHHHHHcCCCccc---------cCCCCHHHHHHH
Q 030930 64 SLQYIHGVGRTRARQILVDLKMENKI---------TKDMSEEELITI 101 (169)
Q Consensus 64 ALt~I~GIG~~~A~~Ic~~lgi~~k~---------~~~Ls~~el~~L 101 (169)
+|-+|.||-+-.|..++++.|=.++. -.-|+|.|+..|
T Consensus 5 slisirgidreraerllkkyggyskvreagveelredgltdaqirel 51 (55)
T d2csba4 5 SLISIRGIDRERAERLLKKYGGYSKVREAGVEELREDGLTDAQIREL 51 (55)
T ss_dssp HHHTSTTCCHHHHHHHHHHHTSHHHHHTSCHHHHHHTTCCHHHHHHH
T ss_pred ceeeeecccHHHHHHHHHHhcChhHHHHhhHHHHHHccccHHHHHHh
Confidence 46789999999999999998865332 245666666544
No 66
>d1c53a_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Desulfovibrio vulgaris, different strains [TaxId: 881]}
Probab=31.50 E-value=13 Score=22.34 Aligned_cols=18 Identities=39% Similarity=0.501 Sum_probs=15.6
Q ss_pred cCCCCHHHHHHHHHHHhh
Q 030930 90 TKDMSEEELITIRDEVSK 107 (169)
Q Consensus 90 ~~~Ls~~el~~L~~~l~~ 107 (169)
.+.|||+|+..|..+|..
T Consensus 61 ~~~Lsd~ei~~l~aYi~s 78 (79)
T d1c53a_ 61 VKRYSDEEMKAMADYMSK 78 (79)
T ss_pred HhcCCHHHHHHHHHHHHh
Confidence 478999999999998853
No 67
>d1aiha_ d.163.1.1 (A:) Integrase {Bacteriophage HP1 [TaxId: 10690]}
Probab=30.88 E-value=20 Score=24.33 Aligned_cols=38 Identities=18% Similarity=0.165 Sum_probs=23.8
Q ss_pred cCCCCHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhhhcccCcc
Q 030930 90 TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRH 136 (169)
Q Consensus 90 ~~~Ls~~el~~L~~~l~~~~Ie~dLr~~~~~nI~rL~~I~sYRG~RH 136 (169)
..-||++|+.+|.+.+.+.. +.+++ .++.+..|-|+|.
T Consensus 4 ~~~Lt~eEi~~l~~~~~~~~-~~~~~--------~~i~l~~~tG~R~ 41 (170)
T d1aiha_ 4 LAFLYERDIYRLLAECDNSR-NPDLG--------LIVRICLATGARW 41 (170)
T ss_dssp CCCCCHHHHHHHHHHHTTSS-STTHH--------HHHHHHHHHCCCH
T ss_pred ccCCCHHHHHHHHHHhhhcC-ChhHH--------HHHHHHHHHCCch
Confidence 45699999999999886421 11232 3445555666664
No 68
>d1szpa1 a.60.4.1 (A:81-144) DNA repair protein Rad51, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=30.18 E-value=11 Score=23.27 Aligned_cols=19 Identities=26% Similarity=0.489 Sum_probs=15.4
Q ss_pred eccccccCHHHHHHHHHHc
Q 030930 65 LQYIHGVGRTRARQILVDL 83 (169)
Q Consensus 65 Lt~I~GIG~~~A~~Ic~~l 83 (169)
|..|+|||..+|.+|...+
T Consensus 38 L~~i~Gi~e~~a~KIi~~A 56 (64)
T d1szpa1 38 LLEIKGISEAKADKLLNEA 56 (64)
T ss_dssp HHTSTTCCHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHH
Confidence 7788999999998887654
No 69
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}
Probab=28.28 E-value=19 Score=23.49 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=20.9
Q ss_pred EeeccccccCHHH-HHHHHHHcCCC
Q 030930 63 YSLQYIHGVGRTR-ARQILVDLKME 86 (169)
Q Consensus 63 ~ALt~I~GIG~~~-A~~Ic~~lgi~ 86 (169)
..|+.-.|-|+++ |..+.+++|+.
T Consensus 7 I~i~G~pGsGKTTia~~La~~l~~~ 31 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKSGLK 31 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCc
Confidence 5689999999997 88888999876
No 70
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}
Probab=28.17 E-value=21 Score=22.71 Aligned_cols=24 Identities=33% Similarity=0.418 Sum_probs=19.7
Q ss_pred EeeccccccCHHH-HHHHHHHcCCC
Q 030930 63 YSLQYIHGVGRTR-ARQILVDLKME 86 (169)
Q Consensus 63 ~ALt~I~GIG~~~-A~~Ic~~lgi~ 86 (169)
..|+...|.|+++ |..+.++||+.
T Consensus 5 I~l~G~~GsGKSTvak~La~~L~~~ 29 (169)
T d1kaga_ 5 IFLVGPMGAGKSTIGRQLAQQLNME 29 (169)
T ss_dssp EEEECCTTSCHHHHHHHHHHHTTCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4577999999999 66677888876
No 71
>d1h1oa1 a.3.1.4 (A:12-93) Cytochrome c4 {Thiobacillus ferrooxidans [TaxId: 920]}
Probab=27.23 E-value=18 Score=21.90 Aligned_cols=19 Identities=5% Similarity=0.219 Sum_probs=16.3
Q ss_pred cCCCCHHHHHHHHHHHhhc
Q 030930 90 TKDMSEEELITIRDEVSKY 108 (169)
Q Consensus 90 ~~~Ls~~el~~L~~~l~~~ 108 (169)
...|||+|+..|..+|+..
T Consensus 57 ~~~LSd~eI~~la~Yi~sl 75 (82)
T d1h1oa1 57 AQALDSAKITALADYFNAQ 75 (82)
T ss_dssp HHTCCHHHHHHHHHHHHHC
T ss_pred HhhCCHHHHHHHHHHHHhC
Confidence 3689999999999999753
No 72
>d2p6ra2 a.289.1.2 (A:489-686) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=26.96 E-value=12 Score=28.03 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=19.8
Q ss_pred eeccccccCHHHHHHHHHHcCCC
Q 030930 64 SLQYIHGVGRTRARQILVDLKME 86 (169)
Q Consensus 64 ALt~I~GIG~~~A~~Ic~~lgi~ 86 (169)
.|..|+|||+..|.++.+ +||.
T Consensus 145 ~L~~i~gvgr~rAr~L~~-~Gi~ 166 (198)
T d2p6ra2 145 ELVRIRHIGRVRARKLYN-AGIR 166 (198)
T ss_dssp HHHTSTTCCHHHHHHHHT-TTCC
T ss_pred hHhcCCCCCHHHHHHHHH-cCCC
Confidence 478999999999999985 8988
No 73
>d1cora_ a.3.1.1 (A:) Cytochrome c551 {Pseudomonas stutzeri [TaxId: 316]}
Probab=26.20 E-value=19 Score=21.78 Aligned_cols=17 Identities=18% Similarity=0.233 Sum_probs=14.6
Q ss_pred CCCCHHHHHHHHHHHhh
Q 030930 91 KDMSEEELITIRDEVSK 107 (169)
Q Consensus 91 ~~Ls~~el~~L~~~l~~ 107 (169)
..|||+|+..|..+|..
T Consensus 64 ~~lsdeei~~la~Yi~S 80 (82)
T d1cora_ 64 NPVTEEEAKILAEWILS 80 (82)
T ss_dssp CSCCHHHHHHHHHHHHS
T ss_pred cCCCHHHHHHHHHHHHh
Confidence 56999999999998854
No 74
>d1wvec1 a.3.1.1 (C:602-675) p-Cresol methylhydroxylase, cytochrome c subunit {Pseudomonas putida [TaxId: 303]}
Probab=26.18 E-value=20 Score=21.84 Aligned_cols=18 Identities=17% Similarity=0.307 Sum_probs=15.6
Q ss_pred cCCCCHHHHHHHHHHHhh
Q 030930 90 TKDMSEEELITIRDEVSK 107 (169)
Q Consensus 90 ~~~Ls~~el~~L~~~l~~ 107 (169)
.+.|||+|+..|..+|..
T Consensus 54 ~~~lsd~ei~~l~~Yi~s 71 (74)
T d1wvec1 54 ASYVDDESLTQVAEYLSS 71 (74)
T ss_dssp TTTSCHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHh
Confidence 367999999999999865
No 75
>d1ae9a_ d.163.1.1 (A:) Integrase (Int) {Bacteriophage lambda [TaxId: 10710]}
Probab=26.18 E-value=33 Score=22.06 Aligned_cols=16 Identities=13% Similarity=0.349 Sum_probs=14.0
Q ss_pred CCCHHHHHHHHHHHhh
Q 030930 92 DMSEEELITIRDEVSK 107 (169)
Q Consensus 92 ~Ls~~el~~L~~~l~~ 107 (169)
-||+||+.+|.+.+++
T Consensus 3 ~lt~ee~~~l~~~~~~ 18 (179)
T d1ae9a_ 3 RLTADEYLKIYQAAES 18 (179)
T ss_dssp CCCHHHHHHHHHHGGG
T ss_pred CCCHHHHHHHHHHHhh
Confidence 4899999999998865
No 76
>d1ls9a_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Green alga (Cladophora glomerata) [TaxId: 162068]}
Probab=25.86 E-value=19 Score=21.97 Aligned_cols=17 Identities=12% Similarity=0.348 Sum_probs=14.7
Q ss_pred cCCCCHHHHHHHHHHHh
Q 030930 90 TKDMSEEELITIRDEVS 106 (169)
Q Consensus 90 ~~~Ls~~el~~L~~~l~ 106 (169)
.+.|||+|+..|..+|.
T Consensus 67 ~~~Lsdeei~~l~aYi~ 83 (91)
T d1ls9a_ 67 ADRLDEDDIEAVSNYVY 83 (91)
T ss_dssp TTTSCHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHH
Confidence 35799999999999884
No 77
>d1f1fa_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Arthrospira maxima [TaxId: 129910]}
Probab=25.79 E-value=20 Score=21.63 Aligned_cols=17 Identities=12% Similarity=0.091 Sum_probs=14.6
Q ss_pred cCCCCHHHHHHHHHHHh
Q 030930 90 TKDMSEEELITIRDEVS 106 (169)
Q Consensus 90 ~~~Ls~~el~~L~~~l~ 106 (169)
...|||+|+..|..+|.
T Consensus 65 ~~~Lsd~ei~~v~aYi~ 81 (88)
T d1f1fa_ 65 NGRLSPLQIEDVAAYVV 81 (88)
T ss_dssp TTTSCHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHH
Confidence 35699999999999884
No 78
>d1t94a2 e.8.1.7 (A:75-407) DNA polymerase kappa {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.45 E-value=17 Score=28.71 Aligned_cols=24 Identities=13% Similarity=0.418 Sum_probs=20.0
Q ss_pred EeeccccccCHHHHHHHHHHcCCCc
Q 030930 63 YSLQYIHGVGRTRARQILVDLKMEN 87 (169)
Q Consensus 63 ~ALt~I~GIG~~~A~~Ic~~lgi~~ 87 (169)
..+++|+|||+.++..+ ..+||.+
T Consensus 275 lpi~~i~GiG~~~~~~L-~~~gi~t 298 (333)
T d1t94a2 275 LPIRKVSGIGKVTEKML-KALGIIT 298 (333)
T ss_dssp CBGGGCTTSCHHHHHHH-HHTTCCB
T ss_pred CCccccCCcCHHHHHHH-HHcCCcC
Confidence 45899999999999875 7899874
No 79
>d1cmwa1 a.60.7.1 (A:174-289) 5' to 3' exonuclease domain of DNA polymerase Taq {Thermus aquaticus [TaxId: 271]}
Probab=25.20 E-value=2 Score=29.05 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=18.2
Q ss_pred eccccccCHHHHHHHHHHcCCC
Q 030930 65 LQYIHGVGRTRARQILVDLKME 86 (169)
Q Consensus 65 Lt~I~GIG~~~A~~Ic~~lgi~ 86 (169)
+-.|+|||..+|..++...|-=
T Consensus 20 ipGv~GiG~KtA~kll~~~gsl 41 (116)
T d1cmwa1 20 LPGVKGIGEKTARKLLEEWGSL 41 (116)
T ss_dssp CCCCCCSTTCTTTTTGGGGGTT
T ss_pred cccccccCchhHHHHHHhcchH
Confidence 3468999999999999888643
No 80
>d1ctja_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Monoraphidium braunii [TaxId: 34112]}
Probab=24.80 E-value=20 Score=21.94 Aligned_cols=18 Identities=17% Similarity=0.265 Sum_probs=15.5
Q ss_pred cCCCCHHHHHHHHHHHhh
Q 030930 90 TKDMSEEELITIRDEVSK 107 (169)
Q Consensus 90 ~~~Ls~~el~~L~~~l~~ 107 (169)
.+.||++|++.|..+|.+
T Consensus 65 ~~~Lsd~ei~~v~~Yi~~ 82 (89)
T d1ctja_ 65 DGRLDEDEIAGVAAYVYD 82 (89)
T ss_dssp BTTBCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 478999999999999853
No 81
>d1fcdc1 a.3.1.4 (C:1-80) Flavocytochrome c sulfide dehydrogenase, FCSD, cytochrome subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}
Probab=24.80 E-value=22 Score=21.43 Aligned_cols=18 Identities=11% Similarity=0.167 Sum_probs=15.9
Q ss_pred cCCCCHHHHHHHHHHHhh
Q 030930 90 TKDMSEEELITIRDEVSK 107 (169)
Q Consensus 90 ~~~Ls~~el~~L~~~l~~ 107 (169)
...|||+|+..|..++..
T Consensus 58 ~~~Lsd~ei~~la~Y~~s 75 (80)
T d1fcdc1 58 AKGYSTADFEKMAGYFKQ 75 (80)
T ss_dssp HTTSCHHHHHHHHHHHHT
T ss_pred HccCCHHHHHHHHHHHHh
Confidence 478999999999999864
No 82
>d1ynra1 a.3.1.1 (A:1-80) Cytochrome c552 {Hydrogenobacter thermophilus [TaxId: 940]}
Probab=24.56 E-value=25 Score=21.31 Aligned_cols=18 Identities=6% Similarity=0.184 Sum_probs=15.6
Q ss_pred cCCCCHHHHHHHHHHHhh
Q 030930 90 TKDMSEEELITIRDEVSK 107 (169)
Q Consensus 90 ~~~Ls~~el~~L~~~l~~ 107 (169)
...|||+|++.|..+|..
T Consensus 61 ~~~lsd~ei~~l~~yi~s 78 (80)
T d1ynra1 61 PQNVTDAEAKQLAQWILS 78 (80)
T ss_dssp CCSCCHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHHHH
Confidence 478999999999999854
No 83
>d1gksa_ a.3.1.1 (A:) Cytochrome c551 {Ectothiorhodospira halophila [TaxId: 1053]}
Probab=24.10 E-value=20 Score=22.08 Aligned_cols=20 Identities=10% Similarity=0.112 Sum_probs=15.8
Q ss_pred ccccCCCCHHHHHHHHHHHh
Q 030930 87 NKITKDMSEEELITIRDEVS 106 (169)
Q Consensus 87 ~k~~~~Ls~~el~~L~~~l~ 106 (169)
+-..+.|||+||..+..+|-
T Consensus 56 Pa~g~~LsdeeI~~v~~Yi~ 75 (78)
T d1gksa_ 56 PAYDGRADREDLVKAIEYML 75 (78)
T ss_dssp CCCBTTBCHHHHHHHHHHHH
T ss_pred CccCCCCCHHHHHHHHHHHH
Confidence 33347899999999999873
No 84
>d1m70a1 a.3.1.4 (A:1-92) Cytochrome c4 {Pseudomonas stutzeri [TaxId: 316]}
Probab=23.99 E-value=26 Score=21.11 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=15.7
Q ss_pred cCCCCHHHHHHHHHHHhh
Q 030930 90 TKDMSEEELITIRDEVSK 107 (169)
Q Consensus 90 ~~~Ls~~el~~L~~~l~~ 107 (169)
.+.|||+|+..|..+|+.
T Consensus 70 ~~~Lsd~ei~dl~aYi~s 87 (92)
T d1m70a1 70 LDPLSDQDLEDIAAYFSS 87 (92)
T ss_dssp TTTCCHHHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHHHHH
Confidence 367999999999999875
No 85
>d1b22a_ a.60.4.1 (A:) DNA repair protein Rad51, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.99 E-value=11 Score=23.70 Aligned_cols=20 Identities=30% Similarity=0.542 Sum_probs=16.3
Q ss_pred eeccccccCHHHHHHHHHHc
Q 030930 64 SLQYIHGVGRTRARQILVDL 83 (169)
Q Consensus 64 ALt~I~GIG~~~A~~Ic~~l 83 (169)
-|..|+|||..+|..|.+.+
T Consensus 44 ~L~~i~G~~e~~A~KIi~~a 63 (70)
T d1b22a_ 44 ELINIKGISEAKADKILAEA 63 (70)
T ss_dssp HHHTTTTCSTTHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHH
Confidence 47889999999999888654
No 86
>d1cyja_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=22.98 E-value=23 Score=21.60 Aligned_cols=17 Identities=29% Similarity=0.417 Sum_probs=14.9
Q ss_pred cCCCCHHHHHHHHHHHh
Q 030930 90 TKDMSEEELITIRDEVS 106 (169)
Q Consensus 90 ~~~Ls~~el~~L~~~l~ 106 (169)
.+.|||+|+..|..+|.
T Consensus 64 ~~~Lsd~ei~~v~aYi~ 80 (90)
T d1cyja_ 64 ADRLSEEEIQAVAEYVF 80 (90)
T ss_dssp TTTSCHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHH
Confidence 46899999999999884
No 87
>d1a0pa2 d.163.1.1 (A:111-292) Recombinase XerD {Escherichia coli [TaxId: 562]}
Probab=22.91 E-value=30 Score=22.87 Aligned_cols=40 Identities=23% Similarity=0.247 Sum_probs=23.8
Q ss_pred CCCCHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhhhcccCccC
Q 030930 91 KDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHI 137 (169)
Q Consensus 91 ~~Ls~~el~~L~~~l~~~~Ie~dLr~~~~~nI~rL~~I~sYRG~RH~ 137 (169)
++||+||+++|.+....- -..++|. ..+..+-.|-|+|-.
T Consensus 1 k~Lt~eei~~ll~~~~~~-~~~~lRd------~~l~~l~~~tG~R~~ 40 (182)
T d1a0pa2 1 KDLSEAQVERLLQAPLID-QPLELRD------KAMLEVLYATGLRVS 40 (182)
T ss_dssp CCCCHHHHHHHHHCSCTT-SHHHHHH------HHHHHHHHHHCCCHH
T ss_pred CCCCHHHHHHHHhCcccC-CcHHHHH------HHHHHHHHHhCCccC
Confidence 579999999997765310 1123331 134555667787754
No 88
>d1gdva_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Red alga (Porphyra yezoensis) [TaxId: 2788]}
Probab=22.77 E-value=25 Score=21.12 Aligned_cols=17 Identities=12% Similarity=0.155 Sum_probs=14.9
Q ss_pred cCCCCHHHHHHHHHHHh
Q 030930 90 TKDMSEEELITIRDEVS 106 (169)
Q Consensus 90 ~~~Ls~~el~~L~~~l~ 106 (169)
...|||+|+..|..+|.
T Consensus 62 ~~~Lsd~ei~~v~~Yi~ 78 (85)
T d1gdva_ 62 GGRLVDEDIEDAANYVL 78 (85)
T ss_dssp TTTSCHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHH
Confidence 47799999999999884
No 89
>d1f46a_ d.129.4.1 (A:) Cell-division protein ZipA, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=22.62 E-value=40 Score=23.21 Aligned_cols=36 Identities=14% Similarity=0.154 Sum_probs=30.7
Q ss_pred HHHHHHHHHHcCCC--ccccCCCCHHHHHHHHHHHhhc
Q 030930 73 RTRARQILVDLKME--NKITKDMSEEELITIRDEVSKY 108 (169)
Q Consensus 73 ~~~A~~Ic~~lgi~--~k~~~~Ls~~el~~L~~~l~~~ 108 (169)
-.+|..|+..+|-. +..-..||++.++.+++.+..|
T Consensus 97 l~~a~~la~~l~g~l~D~~r~~lt~q~i~~~R~~i~e~ 134 (139)
T d1f46a_ 97 LQSAQHIADEVGGVVLDDQRRMMTPQKLREYQDIIREV 134 (139)
T ss_dssp HHHHHHHHHHHTCEEECTTSCBCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHH
Confidence 46899999999988 6667999999999999888654
No 90
>d1f54a_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.34 E-value=26 Score=20.97 Aligned_cols=18 Identities=11% Similarity=0.519 Sum_probs=14.4
Q ss_pred CCCCHHHHHHHHHHHhhc
Q 030930 91 KDMSEEELITIRDEVSKY 108 (169)
Q Consensus 91 ~~Ls~~el~~L~~~l~~~ 108 (169)
.+||++|+..|.+....|
T Consensus 2 ~~lt~eqi~el~~~F~~~ 19 (77)
T d1f54a_ 2 SNLTEEQIAEFKEAFALF 19 (77)
T ss_dssp CCCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 578999999988877654
No 91
>d1cnoa_ a.3.1.1 (A:) Cytochrome c552 {Pseudomonas nautica [TaxId: 2743]}
Probab=21.94 E-value=27 Score=21.12 Aligned_cols=19 Identities=5% Similarity=0.198 Sum_probs=16.3
Q ss_pred cCCCCHHHHHHHHHHHhhc
Q 030930 90 TKDMSEEELITIRDEVSKY 108 (169)
Q Consensus 90 ~~~Ls~~el~~L~~~l~~~ 108 (169)
...|||+|+..|..+|...
T Consensus 64 ~~~Lsd~di~~laaYi~sl 82 (86)
T d1cnoa_ 64 ATALSDADIANLAAYYASN 82 (86)
T ss_dssp HTTCCHHHHHHHHHHHHHS
T ss_pred HccCCHHHHHHHHHHHHhC
Confidence 3789999999999999754
No 92
>d1a56a_ a.3.1.1 (A:) Cytochrome c552 {Nitrosomonas europaea [TaxId: 915]}
Probab=21.54 E-value=21 Score=21.71 Aligned_cols=17 Identities=12% Similarity=0.212 Sum_probs=14.7
Q ss_pred CCCCHHHHHHHHHHHhh
Q 030930 91 KDMSEEELITIRDEVSK 107 (169)
Q Consensus 91 ~~Ls~~el~~L~~~l~~ 107 (169)
..|||+|+..|..+|..
T Consensus 63 ~~Lsd~ei~~l~~Yl~s 79 (81)
T d1a56a_ 63 VNVSDADAKALADWILT 79 (81)
T ss_dssp CSSSSHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 56999999999998853
No 93
>d1mz4a_ a.3.1.1 (A:) Cytochrome c550 {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=21.46 E-value=25 Score=22.83 Aligned_cols=16 Identities=19% Similarity=0.611 Sum_probs=14.2
Q ss_pred CCCCHHHHHHHHHHHh
Q 030930 91 KDMSEEELITIRDEVS 106 (169)
Q Consensus 91 ~~Ls~~el~~L~~~l~ 106 (169)
+.|||+|+..|..+|-
T Consensus 105 ~~Lsdeei~av~aYi~ 120 (131)
T d1mz4a_ 105 RNLTEKDLVAIAGHIL 120 (131)
T ss_dssp TTCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHH
Confidence 5799999999999873
No 94
>d351ca_ a.3.1.1 (A:) Cytochrome c551 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=21.13 E-value=29 Score=20.97 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=14.6
Q ss_pred CCCCHHHHHHHHHHHhh
Q 030930 91 KDMSEEELITIRDEVSK 107 (169)
Q Consensus 91 ~~Ls~~el~~L~~~l~~ 107 (169)
-.|||+|+..|..+|..
T Consensus 64 ~~lsd~ei~~la~Yi~S 80 (82)
T d351ca_ 64 NAVSDDEAQTLAKWVLS 80 (82)
T ss_dssp CSCCHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHh
Confidence 46999999999999854
No 95
>d1c6sa_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Cyanobacterium (Synechococcus elongatus) [TaxId: 32046]}
Probab=20.81 E-value=22 Score=21.54 Aligned_cols=17 Identities=12% Similarity=0.261 Sum_probs=14.8
Q ss_pred cCCCCHHHHHHHHHHHh
Q 030930 90 TKDMSEEELITIRDEVS 106 (169)
Q Consensus 90 ~~~Ls~~el~~L~~~l~ 106 (169)
.+.|||+|+..|..+|.
T Consensus 62 ~~~Ls~~ei~~v~aYi~ 78 (87)
T d1c6sa_ 62 AGRLTDEQIQDVAAYVL 78 (87)
T ss_dssp TTTSCSHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHH
Confidence 46799999999999884
No 96
>d1f1ca_ a.3.1.1 (A:) Photosystem II associated cytochrome c549 {Arthrospira maxima [TaxId: 129910]}
Probab=20.45 E-value=28 Score=22.51 Aligned_cols=16 Identities=19% Similarity=0.486 Sum_probs=14.4
Q ss_pred CCCCHHHHHHHHHHHh
Q 030930 91 KDMSEEELITIRDEVS 106 (169)
Q Consensus 91 ~~Ls~~el~~L~~~l~ 106 (169)
+.|||+|+..|..+|.
T Consensus 103 ~~Lsdedi~ai~aYi~ 118 (129)
T d1f1ca_ 103 RNISEDDLYNVAGYIL 118 (129)
T ss_dssp SSCCHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHH
Confidence 6799999999999884
No 97
>d2pq3a1 a.39.1.5 (A:3-75) Calmodulin {Rattus norvegicus [TaxId: 10116]}
Probab=20.31 E-value=28 Score=20.67 Aligned_cols=17 Identities=18% Similarity=0.544 Sum_probs=14.3
Q ss_pred CCCHHHHHHHHHHHhhc
Q 030930 92 DMSEEELITIRDEVSKY 108 (169)
Q Consensus 92 ~Ls~~el~~L~~~l~~~ 108 (169)
+||++|+..+.++...|
T Consensus 1 qLs~eei~el~~~F~~~ 17 (73)
T d2pq3a1 1 QLTEEQIAEFKEAFSLF 17 (73)
T ss_dssp CCCHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHHH
Confidence 69999999999887654
Done!