BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030931
(169 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 170 bits (430), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 73/128 (57%), Positives = 99/128 (77%)
Query: 30 EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
E V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ +A++E ++ +
Sbjct: 37 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAE 96
Query: 90 PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
+ ++V+LVFANKQD+ AM E+ + LGL L++R W+IQ TCA GDGLYEGLDWL
Sbjct: 97 DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 156
Query: 150 ASTLKEMR 157
++ L+ +
Sbjct: 157 SNQLRNQK 164
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 169 bits (429), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 73/128 (57%), Positives = 99/128 (77%)
Query: 30 EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
E V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ +A++E ++ +
Sbjct: 53 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAE 112
Query: 90 PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
+ ++V+LVFANKQD+ AM E+ + LGL L++R W+IQ TCA GDGLYEGLDWL
Sbjct: 113 DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 172
Query: 150 ASTLKEMR 157
++ L+ +
Sbjct: 173 SNQLRNQK 180
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 169 bits (428), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 73/128 (57%), Positives = 99/128 (77%)
Query: 30 EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
E V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ +A++E ++ +
Sbjct: 54 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAE 113
Query: 90 PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
+ ++V+LVFANKQD+ AM E+ + LGL L++R W+IQ TCA GDGLYEGLDWL
Sbjct: 114 DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 173
Query: 150 ASTLKEMR 157
++ L+ +
Sbjct: 174 SNQLRNQK 181
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 169 bits (427), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 73/128 (57%), Positives = 99/128 (77%)
Query: 30 EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
E V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ +A++E ++ +
Sbjct: 202 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAE 261
Query: 90 PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
+ ++V+LVFANKQD+ AM E+ + LGL L++R W+IQ TCA GDGLYEGLDWL
Sbjct: 262 DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 321
Query: 150 ASTLKEMR 157
++ L+ +
Sbjct: 322 SNQLRNQK 329
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 168 bits (425), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 75/125 (60%), Positives = 97/125 (77%)
Query: 30 EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
E V+YKN+ FTVWDVGGQ+K+RPLWRHY+ NT +I+VVDS DR+RIG+A++E ++ +
Sbjct: 54 ETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNE 113
Query: 90 PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
M N+++LVFANK D+ AM+ EV E LGL +KNRKW+ Q +CA GDGLYEGLDWL
Sbjct: 114 DEMRNAILLVFANKHDLPQAMSISEVTEKLGLQTIKNRKWYCQTSCATNGDGLYEGLDWL 173
Query: 150 ASTLK 154
A LK
Sbjct: 174 ADNLK 178
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 167 bits (422), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 72/128 (56%), Positives = 98/128 (76%)
Query: 30 EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
E V+YKN+ FTVWDVGG +K+RPLWRHYF NT GLI+VVDS DRER+ +A++E ++ +
Sbjct: 39 ETVEYKNISFTVWDVGGLDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAE 98
Query: 90 PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
+ ++V+LVFANKQD+ AM E+ + LGL L++R W+IQ TCA GDGLYEGLDWL
Sbjct: 99 DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 158
Query: 150 ASTLKEMR 157
++ L+ +
Sbjct: 159 SNQLRNQK 166
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 166 bits (419), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 75/131 (57%), Positives = 94/131 (71%)
Query: 30 EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
E V YKNV F VWDVGGQ+K+RPLWRHY+ T GLI+VVD DR+RI +A+QE II D
Sbjct: 359 ETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIIND 418
Query: 90 PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
M +++IL+FANKQD+ AM P E+ E LGL +++R W++Q +CA GDGLYEGL WL
Sbjct: 419 REMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL 478
Query: 150 ASTLKEMRAAG 160
S K AA
Sbjct: 479 TSNYKSKLAAA 489
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 165 bits (418), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 72/128 (56%), Positives = 96/128 (75%)
Query: 30 EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
E V+++N+ FTVWDVGGQ+K+RPLWRHY++NTDGLI+VVDS DRERI A++E +I +
Sbjct: 54 ETVEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINE 113
Query: 90 PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
+ +++ILVFANKQD+ AM+ EV E L L ++ R W IQ TCA +GDGLYEG DWL
Sbjct: 114 EELKDAIILVFANKQDLPNAMSAAEVTEKLHLNTIRERNWFIQSTCATRGDGLYEGFDWL 173
Query: 150 ASTLKEMR 157
+ L +
Sbjct: 174 TTHLNNAK 181
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 163 bits (413), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 71/125 (56%), Positives = 97/125 (77%)
Query: 30 EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
E VQYKN+ FTVWDVGGQ+++R LWRHY+ NT+G+I+VVDS DR RIG+A++ Q ++ +
Sbjct: 37 ETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNE 96
Query: 90 PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
+ N+ LVFANKQD+ AM+ E+ E LGL ++NR W IQ TCA G+GLYEGL+WL
Sbjct: 97 DELRNAAWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWL 156
Query: 150 ASTLK 154
+++LK
Sbjct: 157 SNSLK 161
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 163 bits (413), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 71/125 (56%), Positives = 97/125 (77%)
Query: 30 EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
E VQYKN+ FTVWDVGGQ+++R LWRHY+ NT+G+I+V+DS DR RIG+A++ Q ++ +
Sbjct: 54 ETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNE 113
Query: 90 PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
+ N+V LVFANKQD+ AM+ E+ E LGL ++NR W IQ TCA G+GLYEGL+WL
Sbjct: 114 DELRNAVWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQSTCATSGEGLYEGLEWL 173
Query: 150 ASTLK 154
++ LK
Sbjct: 174 SNNLK 178
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 163 bits (412), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 70/124 (56%), Positives = 95/124 (76%)
Query: 30 EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
E V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DR+R+ +A+ E ++ +
Sbjct: 57 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNE 116
Query: 90 PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
+ ++V+LVFANKQD+ AM E+ + LGL L+ R W+IQ TCA G+GLYEGLDWL
Sbjct: 117 DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 176
Query: 150 ASTL 153
++ +
Sbjct: 177 SNNI 180
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 163 bits (412), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 71/125 (56%), Positives = 97/125 (77%)
Query: 30 EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
E VQYKN+ FTVWDVGGQ+++R LWRHY+ NT+G+I+VVDS DR RIG+A++ Q ++ +
Sbjct: 54 ETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNE 113
Query: 90 PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
+ N+ LVFANKQD+ AM+ E+ E LGL ++NR W IQ TCA G+GLYEGL+WL
Sbjct: 114 DELRNAAWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWL 173
Query: 150 ASTLK 154
+++LK
Sbjct: 174 SNSLK 178
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 162 bits (411), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 73/125 (58%), Positives = 92/125 (73%)
Query: 30 EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
E V YKNV F VWDVGGQ+K+RPLWRHY+ T GLI+VVD DR+RI +A+QE II D
Sbjct: 49 ETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIIND 108
Query: 90 PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
M +++IL+FANKQD+ AM P E+ E LGL +++R W++Q +CA GDGLYEGL WL
Sbjct: 109 REMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL 168
Query: 150 ASTLK 154
S K
Sbjct: 169 TSNYK 173
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 162 bits (411), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 73/125 (58%), Positives = 92/125 (73%)
Query: 30 EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
E V YKNV F VWDVGGQ+K+RPLWRHY+ T GLI+VVD DR+RI +A+QE II D
Sbjct: 37 ETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIIND 96
Query: 90 PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
M +++IL+FANKQD+ AM P E+ E LGL +++R W++Q +CA GDGLYEGL WL
Sbjct: 97 REMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL 156
Query: 150 ASTLK 154
S K
Sbjct: 157 TSNYK 161
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 162 bits (411), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 73/125 (58%), Positives = 92/125 (73%)
Query: 30 EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
E V YKNV F VWDVGGQ+K+RPLWRHY+ T GLI+VVD DR+RI +A+QE II D
Sbjct: 50 ETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIIND 109
Query: 90 PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
M +++IL+FANKQD+ AM P E+ E LGL +++R W++Q +CA GDGLYEGL WL
Sbjct: 110 REMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL 169
Query: 150 ASTLK 154
S K
Sbjct: 170 TSNYK 174
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 161 bits (407), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 72/122 (59%), Positives = 91/122 (74%)
Query: 30 EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
E V YKNV F VWDVGGQ+K+RPLWRHY+ T GLI+VVD DR+RI +A+QE II D
Sbjct: 37 ETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIIND 96
Query: 90 PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
M +++IL+FANKQD+ AM P E+ E LGL +++R W++Q +CA GDGLYEGL WL
Sbjct: 97 REMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL 156
Query: 150 AS 151
S
Sbjct: 157 TS 158
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 160 bits (406), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 71/126 (56%), Positives = 97/126 (76%)
Query: 30 EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
E V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ ++ E Q ++++
Sbjct: 66 ETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQE 125
Query: 90 PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
+ ++V+LVFANKQDM AM E+ + LGL L++R W++Q TCA +G GLY+GLDWL
Sbjct: 126 DELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWL 185
Query: 150 ASTLKE 155
+ L +
Sbjct: 186 SHELSK 191
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 160 bits (405), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 72/127 (56%), Positives = 92/127 (72%)
Query: 30 EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
E V YKNV F VWDVGG +K+RPLWRHY+ T GLI+VVD DR+RI +A+QE II D
Sbjct: 39 ETVTYKNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIIND 98
Query: 90 PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
M +++IL+FANKQD+ AM P E+ E LGL +++R W++Q +CA GDGLYEGL WL
Sbjct: 99 REMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL 158
Query: 150 ASTLKEM 156
S K +
Sbjct: 159 TSNYKSL 165
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 160 bits (404), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 72/125 (57%), Positives = 91/125 (72%)
Query: 30 EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
E V YKNV F VWDVGG +K+RPLWRHY+ T GLI+VVD DR+RI +A+QE II D
Sbjct: 40 ETVTYKNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIIND 99
Query: 90 PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
M +++IL+FANKQD+ AM P E+ E LGL +++R W++Q +CA GDGLYEGL WL
Sbjct: 100 REMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL 159
Query: 150 ASTLK 154
S K
Sbjct: 160 TSNYK 164
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 159 bits (403), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 72/125 (57%), Positives = 91/125 (72%)
Query: 30 EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
E V YKNV F VWDVGG +K+RPLWRHY+ T GLI+VVD DR+RI +A+QE II D
Sbjct: 50 ETVTYKNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIIND 109
Query: 90 PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
M +++IL+FANKQD+ AM P E+ E LGL +++R W++Q +CA GDGLYEGL WL
Sbjct: 110 REMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL 169
Query: 150 ASTLK 154
S K
Sbjct: 170 TSNYK 174
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 158 bits (399), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 71/125 (56%), Positives = 90/125 (72%)
Query: 30 EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
E V YKNV F VWDVGGQ+K+RPLWRHY+ T GLI+VVD DR+RI +A+QE II D
Sbjct: 37 ETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIIND 96
Query: 90 PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
+++IL+FANKQD+ A P E+ E LGL +++R W++Q +CA GDGLYEGL WL
Sbjct: 97 REXRDAIILIFANKQDLPDAXKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL 156
Query: 150 ASTLK 154
S K
Sbjct: 157 TSNYK 161
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 157 bits (398), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 70/126 (55%), Positives = 95/126 (75%)
Query: 30 EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
E V+YKN+ FTVWDVGGQ+++RPLW+HYF NT GLI+VVDS DRERI + E Q ++
Sbjct: 54 ETVEYKNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLV 113
Query: 90 PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
+ ++V+L+FANKQD+ AM E+ + LGL L+NR W++Q TCA +G GLYEGLDWL
Sbjct: 114 DELRDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWL 173
Query: 150 ASTLKE 155
++ L +
Sbjct: 174 SNELSK 179
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 157 bits (396), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 70/125 (56%), Positives = 95/125 (76%)
Query: 30 EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
E VQY N+ FTVWDVGGQ+++R LWRHY+ NT+G+I+VVDS DR RIG+A++ Q ++ +
Sbjct: 54 ECVQYCNISFTVWDVGGQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNE 113
Query: 90 PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
+ N+ LVFANKQD+ AM+ E+ E LGL ++NR W IQ TCA G+GLYEGL+WL
Sbjct: 114 DELCNAAWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWL 173
Query: 150 ASTLK 154
++ LK
Sbjct: 174 SNCLK 178
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 146 bits (369), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 68/125 (54%), Positives = 90/125 (72%)
Query: 30 EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
E V YKN+ F VWD+GGQ +RP WR Y++NTD +IYVVDS DR+RIG +K E A++++
Sbjct: 39 ETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEE 98
Query: 90 PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
+ ++++VFANKQDM+ AMTP E+ LGL LK+RKW I T A KG GL E ++WL
Sbjct: 99 EELRKAILVVFANKQDMEQAMTPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWL 158
Query: 150 ASTLK 154
TLK
Sbjct: 159 VETLK 163
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 140 bits (353), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 66/125 (52%), Positives = 88/125 (70%)
Query: 30 EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
E V YKN+ F VWD+GG +RP WR Y++NTD +IYVVDS DR+RIG +K E A++++
Sbjct: 41 ETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEE 100
Query: 90 PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
+ ++++VFANKQDM+ AMT E+ LGL LK+RKW I T A KG GL E ++WL
Sbjct: 101 EELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWL 160
Query: 150 ASTLK 154
TLK
Sbjct: 161 VETLK 165
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 137 bits (346), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 62/126 (49%), Positives = 87/126 (69%)
Query: 30 EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
E +QYKN+ F VWD+GGQ +RP WR YF++TD +IYVVDS DR+R+G AK E A++ +
Sbjct: 59 ETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDE 118
Query: 90 PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
+ S++L+FANKQD+ A + E+ E LG+ + NR W I + + GDGL EG+DWL
Sbjct: 119 DELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWL 178
Query: 150 ASTLKE 155
L+E
Sbjct: 179 VERLRE 184
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 129 bits (325), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 57/124 (45%), Positives = 83/124 (66%)
Query: 30 EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
E++ KN F +WD+GGQE LR W Y++NT+ +I VVDS+DRER+ K+E ++
Sbjct: 53 EEIVVKNTHFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAH 112
Query: 90 PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
+ + +L+FANKQDMKG MT E+ + L L +K+ WHIQ CAL G+GL +GL+W+
Sbjct: 113 EDLRKAAVLIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQSCCALTGEGLCQGLEWM 172
Query: 150 ASTL 153
S +
Sbjct: 173 TSRI 176
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 129 bits (324), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 86/126 (68%)
Query: 30 EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
E + YKN+ VWD+GGQ +RP WR Y+ +T +I+VVDS D++R+ A +E ++++
Sbjct: 55 ETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQE 114
Query: 90 PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
+ ++ +LVFANKQD GA++ EV + L L +LK+R W I + A+KG+G+ EGLDWL
Sbjct: 115 EELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWL 174
Query: 150 ASTLKE 155
+KE
Sbjct: 175 IDVIKE 180
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
Length = 171
Score = 124 bits (312), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/125 (51%), Positives = 83/125 (66%)
Query: 30 EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
E V YKN+ F VWD+GG +RP WR Y++NTD +IYVVDS DR+RIG +K E A +++
Sbjct: 44 ETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAXLEE 103
Query: 90 PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
+ ++++VFANKQD + A T E LGL LK+RKW I T A KG GL E +WL
Sbjct: 104 EELRKAILVVFANKQDXEQAXTSSEXANSLGLPALKDRKWQIFKTSATKGTGLDEAXEWL 163
Query: 150 ASTLK 154
TLK
Sbjct: 164 VETLK 168
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 122 bits (307), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 81/125 (64%)
Query: 30 EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
E++ N F +WD+GGQE LR W Y+ NT+ +I VVDS DRERI ++E ++
Sbjct: 53 EEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH 112
Query: 90 PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
+ + +L+FANKQD+K MT E+ + L L +K+ +WHIQ CAL G+GL +GL+W+
Sbjct: 113 EDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM 172
Query: 150 ASTLK 154
S LK
Sbjct: 173 MSRLK 177
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 122 bits (307), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 81/125 (64%)
Query: 30 EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
E++ N F +WD+GGQE LR W Y+ NT+ +I VVDS DRERI ++E ++
Sbjct: 53 EEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH 112
Query: 90 PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
+ + +L+FANKQD+K MT E+ + L L +K+ +WHIQ CAL G+GL +GL+W+
Sbjct: 113 EDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM 172
Query: 150 ASTLK 154
S LK
Sbjct: 173 MSRLK 177
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 122 bits (307), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 81/125 (64%)
Query: 30 EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
E++ N F +WD+GGQE LR W Y+ NT+ +I VVDS DRERI ++E ++
Sbjct: 59 EEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH 118
Query: 90 PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
+ + +L+FANKQD+K MT E+ + L L +K+ +WHIQ CAL G+GL +GL+W+
Sbjct: 119 EDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM 178
Query: 150 ASTLK 154
S LK
Sbjct: 179 MSRLK 183
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 121 bits (303), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 80/124 (64%)
Query: 30 EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
E++ N F +WD+GGQE LR W Y+ NT+ +I VVDS DRERI ++E ++
Sbjct: 58 EEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH 117
Query: 90 PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
+ + +L+FANKQD+K MT E+ + L L +K+ +WHIQ CAL G+GL +GL+W+
Sbjct: 118 EDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM 177
Query: 150 ASTL 153
S L
Sbjct: 178 MSRL 181
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 115 bits (288), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 80/118 (67%)
Query: 32 VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPF 91
++++ +WDVGGQ+ LR WR+YF +TDGLI+VVDS DR+R+ ++E Q+++ +
Sbjct: 57 LEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEER 116
Query: 92 MLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
+ + +L+FANKQD+ GA++ + E L L +++ W IQG A+ G+ L G+DWL
Sbjct: 117 LAGATLLIFANKQDLPGALSXNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWL 174
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 115 bits (287), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 80/118 (67%)
Query: 32 VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPF 91
++++ +WDVGGQ+ LR WR+YF +TDGLI+VVDS DR+R+ ++E Q+++ +
Sbjct: 57 LEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEER 116
Query: 92 MLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
+ + +L+FANKQD+ GA++ + E L L +++ W IQG A+ G+ L G+DWL
Sbjct: 117 LAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWL 174
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 114 bits (286), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 79/118 (66%)
Query: 32 VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPF 91
++++ +WDVGGQ+ LR WR+YF +TDGLI+VVDS DR+R ++E Q+++ +
Sbjct: 57 LEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRXQDCQRELQSLLVEER 116
Query: 92 MLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
+ + +L+FANKQD+ GA++ + E L L +++ W IQG A+ G+ L G+DWL
Sbjct: 117 LAGATLLIFANKQDLPGALSXNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWL 174
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 113 bits (283), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 80/118 (67%)
Query: 32 VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPF 91
++++ +WDVGGQ+ LR WR+YF +TDGLI+VVDS DR+R+ ++E Q+++ +
Sbjct: 55 LEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEER 114
Query: 92 MLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
+ + +L+FANKQD+ GA++ + E L L +++ W IQG A+ G+ L G+DWL
Sbjct: 115 LAGATLLIFANKQDLPGALSSNAIREVLELDSIRSHHWCIQGCSAVTGENLLPGIDWL 172
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 111 bits (278), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 79/118 (66%)
Query: 32 VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPF 91
++++ +WDVGG + LR WR+YF +TDGLI+VVDS DR+R+ ++E Q+++ +
Sbjct: 40 LEHRGFKLNIWDVGGLKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEER 99
Query: 92 MLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
+ + +L+FANKQD+ GA++ + E L L +++ W IQG A+ G+ L G+DWL
Sbjct: 100 LAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWL 157
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 110 bits (274), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 77/120 (64%)
Query: 30 EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
+ VQ + VWD+GGQ K+RP WR YF NTD LIYV+DS DR+R + QE ++++
Sbjct: 54 KSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEE 113
Query: 90 PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
+ +L+FANKQD+ A E+ EGL L +++R W IQ AL G+G+ +G++W+
Sbjct: 114 EKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWV 173
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 110 bits (274), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 77/120 (64%)
Query: 30 EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
+ VQ + VWD+GGQ K+RP WR YF NTD LIYV+DS DR+R + QE ++++
Sbjct: 53 KSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEE 112
Query: 90 PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
+ +L+FANKQD+ A E+ EGL L +++R W IQ AL G+G+ +G++W+
Sbjct: 113 EKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWV 172
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 109 bits (273), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 77/120 (64%)
Query: 30 EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
+ VQ + VWD+GGQ K+RP WR YF NTD LIYV+DS DR+R + QE ++++
Sbjct: 41 KSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEE 100
Query: 90 PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
+ +L+FANKQD+ A E+ EGL L +++R W IQ AL G+G+ +G++W+
Sbjct: 101 EKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWV 160
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 106 bits (265), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 76/120 (63%)
Query: 30 EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
+ VQ + VWD+GG K+RP WR YF NTD LIYV+DS DR+R + QE ++++
Sbjct: 41 KSVQSQGFKLNVWDIGGLRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEE 100
Query: 90 PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
+ +L+FANKQD+ A E+ EGL L +++R W IQ AL G+G+ +G++W+
Sbjct: 101 EKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWV 160
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 103 bits (258), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 84/131 (64%), Gaps = 2/131 (1%)
Query: 30 EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
EK + ++ FTV+D+ GQ + R LW HY+ +I+V+DS DR R+ AK+E ++
Sbjct: 60 EKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNH 119
Query: 90 PFMLNS--VILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD 147
P + + IL FANK D++ A+T ++V + L L ++K++ WHI + A+KG+GL EG+D
Sbjct: 120 PDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVD 179
Query: 148 WLASTLKEMRA 158
WL ++ ++
Sbjct: 180 WLQDQIQTVKT 190
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 69/131 (52%), Gaps = 8/131 (6%)
Query: 30 EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
E + V FTV+D+GG +K R LW Y++N D +I+VVDS D R+ K E QA++K
Sbjct: 56 ETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKH 115
Query: 90 -------PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDL-KNRKWHIQGTCALKGDG 141
P L FANK D GA T E+ E L L L + + I + LKG G
Sbjct: 116 EDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTG 175
Query: 142 LYEGLDWLAST 152
++EG WL T
Sbjct: 176 VHEGFSWLQET 186
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 65/128 (50%)
Query: 31 KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDP 90
K+ NV +WD+GGQ + R +W Y ++Y+VD+ D+E+I +K E ++ P
Sbjct: 61 KITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKP 120
Query: 91 FMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 150
+ +LV NK+D+ GA+ E+ E + L +++R+ + D + L WL
Sbjct: 121 QLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLI 180
Query: 151 STLKEMRA 158
K R+
Sbjct: 181 QHSKSRRS 188
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 62/119 (52%)
Query: 31 KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDP 90
K+ NV +WD+GGQ + R +W Y ++Y+VD+ D+E+I +K E ++ P
Sbjct: 70 KITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKP 129
Query: 91 FMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
+ +LV NK+D+ GA+ E+ E + L +++R+ + D + L WL
Sbjct: 130 QLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 188
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 62/119 (52%)
Query: 31 KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDP 90
KV NV +WD+GGQ + R +W Y + ++Y++D+ DRE+I ++ E ++ P
Sbjct: 61 KVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKP 120
Query: 91 FMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
+ +LV NK+D+ A+ ++ E + L +++R+ + D + L WL
Sbjct: 121 QLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 179
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 67/133 (50%), Gaps = 12/133 (9%)
Query: 30 EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
E++ + FT +D+GG E+ R +W++Y +G++++VD D R+ ++K E A++ D
Sbjct: 72 EELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTD 131
Query: 90 PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF------------DLKNRKWHIQGTCAL 137
+ N IL+ NK D A++ ++ E GL+ +L R + L
Sbjct: 132 ETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVL 191
Query: 138 KGDGLYEGLDWLA 150
K G EG WL+
Sbjct: 192 KRQGYGEGFRWLS 204
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 12/133 (9%)
Query: 30 EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
E++ + FT +D+GG + R +W++Y +G++++VD D ER+ ++K+E +++ D
Sbjct: 59 EELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTD 118
Query: 90 PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF------------DLKNRKWHIQGTCAL 137
+ N IL+ NK D A++ + E GL+ +L R + L
Sbjct: 119 ETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVL 178
Query: 138 KGDGLYEGLDWLA 150
K G EG W+A
Sbjct: 179 KRQGYGEGFRWMA 191
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 12/133 (9%)
Query: 30 EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
E++ + FT +D+GG + R +W++Y +G++++VD D ER+ ++K+E +++ D
Sbjct: 62 EELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTD 121
Query: 90 PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF------------DLKNRKWHIQGTCAL 137
+ N IL+ NK D A++ + E GL+ +L R + L
Sbjct: 122 ETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVL 181
Query: 138 KGDGLYEGLDWLA 150
K G EG W+A
Sbjct: 182 KRQGYGEGFRWMA 194
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 12/133 (9%)
Query: 30 EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
E++ + FT +D+GG + R +W++Y +G++++VD D ER+ ++K+E +++ D
Sbjct: 53 EELTIAGMTFTTFDLGGGIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTD 112
Query: 90 PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF------------DLKNRKWHIQGTCAL 137
+ N IL+ NK D A++ + E GL+ +L R + L
Sbjct: 113 ETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVL 172
Query: 138 KGDGLYEGLDWLA 150
K G EG W+A
Sbjct: 173 KRQGYGEGFRWMA 185
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 64/129 (49%), Gaps = 9/129 (6%)
Query: 30 EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
E++ N+ FT +D+GG + R LW+ YF +G++++VD+ D ER +A+ E A+
Sbjct: 38 EELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNI 97
Query: 90 PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGT--------CALKGDG 141
+ + ++ NK D A++ E+ LGL + + I+G + +G
Sbjct: 98 AELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQ-RIEGQRPVEVFMCSVVMRNG 156
Query: 142 LYEGLDWLA 150
E WL+
Sbjct: 157 YLEAFQWLS 165
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 64/129 (49%), Gaps = 9/129 (6%)
Query: 30 EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
E++ N+ FT +D+GG + R LW+ YF +G++++VD+ D ER +A+ E A+
Sbjct: 60 EELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNI 119
Query: 90 PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGT--------CALKGDG 141
+ + ++ NK D A++ E+ LGL + + I+G + +G
Sbjct: 120 AELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQ-RIEGQRPVEVFMCSVVMRNG 178
Query: 142 LYEGLDWLA 150
E WL+
Sbjct: 179 YLEAFQWLS 187
>pdb|3AH8|A Chain A, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
Length = 355
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 10/82 (12%)
Query: 35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY----------VVDSLDRERIGKAKQEFQ 84
++VIF + DVGGQ R W H F N +++ +V+S + R+ ++K F+
Sbjct: 193 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFR 252
Query: 85 AIIKDPFMLNSVILVFANKQDM 106
II P+ NS +++F NK+D+
Sbjct: 253 TIITYPWFQNSSVILFLNKKDL 274
>pdb|2BCJ|Q Chain Q, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|2RGN|A Chain A, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|D Chain D, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 353
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 10/82 (12%)
Query: 35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY----------VVDSLDRERIGKAKQEFQ 84
++VIF + DVGGQ R W H F N +++ +V+S + R+ ++K F+
Sbjct: 191 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFR 250
Query: 85 AIIKDPFMLNSVILVFANKQDM 106
II P+ NS +++F NK+D+
Sbjct: 251 TIITYPWFQNSSVILFLNKKDL 272
>pdb|4EKC|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKC|C Chain C, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKD|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
Length = 347
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 10/82 (12%)
Query: 35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY----------VVDSLDRERIGKAKQEFQ 84
++VIF + DVGGQ R W H F N +++ +V+S + R+ ++K F+
Sbjct: 185 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFR 244
Query: 85 AIIKDPFMLNSVILVFANKQDM 106
II P+ NS +++F NK+D+
Sbjct: 245 TIITYPWFQNSSVILFLNKKDL 266
>pdb|4GNK|A Chain A, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|C Chain C, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 353
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 10/82 (12%)
Query: 35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY----------VVDSLDRERIGKAKQEFQ 84
++VIF + DVGGQ R W H F N +++ +V+S + R+ ++K F+
Sbjct: 191 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFR 250
Query: 85 AIIKDPFMLNSVILVFANKQDM 106
II P+ NS +++F NK+D+
Sbjct: 251 TIITYPWFQNSSVILFLNKKDL 272
>pdb|3C7K|A Chain A, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
pdb|3C7K|C Chain C, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
Length = 333
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 13/96 (13%)
Query: 34 YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV-----DSLDRE-----RIGKAKQEF 83
+KN+ F ++DVGGQ R W H F + +I+ V D + E R+ ++ F
Sbjct: 171 FKNLHFRLFDVGGQRSERKKWIHCFEDVTAIIFCVALSGYDQVLHEDETTNRMHESLMLF 230
Query: 84 QAIIKDPFMLNSVILVFANKQDMKGA---MTPMEVC 116
+I + F +++ I++F NK+D+ G +P+ +C
Sbjct: 231 DSICNNKFFIDTSIILFLNKKDLFGEKIKKSPLTIC 266
>pdb|3OHM|A Chain A, Crystal Structure Of Activated G Alpha Q Bound To Its
Effector Phospholipase C Beta 3
Length = 327
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 10/82 (12%)
Query: 35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY----------VVDSLDRERIGKAKQEFQ 84
++VIF + DVGGQ R W H F N +++ +V+S + R+ ++K F+
Sbjct: 165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFR 224
Query: 85 AIIKDPFMLNSVILVFANKQDM 106
II P+ NS +++F NK+D+
Sbjct: 225 TIITYPWFQNSSVILFLNKKDL 246
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLN 94
K V +WD GQE+ R + Y+ + G+I V D D+E K Q I D + +
Sbjct: 55 KTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEI--DRYATS 112
Query: 95 SVI-LVFANKQDMK 107
+V+ L+ NK D+K
Sbjct: 113 TVLKLLVGNKCDLK 126
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLN 94
K V +WD GQE+ R + Y+ + G+I V D D+E K Q I D + +
Sbjct: 55 KTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEI--DRYATS 112
Query: 95 SVI-LVFANKQDMK 107
+V+ L+ NK D+K
Sbjct: 113 TVLKLLVGNKCDLK 126
>pdb|3D7M|A Chain A, Crystal Structure Of The G Protein Fast-Exchange Double
Mutant I56cQ333C
Length = 354
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 13/96 (13%)
Query: 34 YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----------RIGKAKQEF 83
+K++ F ++DVGGQ R W H F +I+ V D + R+ ++ + F
Sbjct: 191 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 250
Query: 84 QAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 116
+I + + ++ I++F NK+D+ K +P+ +C
Sbjct: 251 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 286
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLN 94
K V +WD GQE+ R + Y+ + G+I V D D+E K Q I D + +
Sbjct: 68 KTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEI--DRYATS 125
Query: 95 SVI-LVFANKQDMK 107
+V+ L+ NK D+K
Sbjct: 126 TVLKLLVGNKCDLK 139
>pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif.
pdb|3ONW|B Chain B, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif
Length = 328
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 13/96 (13%)
Query: 34 YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----------RIGKAKQEF 83
+K++ F ++DVGGQ R W H F +I+ V D + R+ ++ + F
Sbjct: 165 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 224
Query: 84 QAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 116
+I + + ++ I++F NK+D+ K +P+ +C
Sbjct: 225 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 260
>pdb|3QI2|A Chain A, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
pdb|3QI2|B Chain B, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
Length = 328
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 13/96 (13%)
Query: 34 YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----------RIGKAKQEF 83
+K++ F ++DVGGQ R W H F +I+ V D + R+ ++ + F
Sbjct: 165 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 224
Query: 84 QAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 116
+I + + ++ I++F NK+D+ K +P+ +C
Sbjct: 225 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 260
>pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1AGR|A Chain A, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1AGR|D Chain D, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1CIP|A Chain A, Gi-Alpha-1 Subunit Of Guanine Nucleotide-Binding Protein
Complexed With A Gtp Analogue
pdb|1BOF|A Chain A, Gi-Alpha-1 Bound To Gdp And Magnesium
pdb|1GDD|A Chain A, Tertiary And Quaternary Structural Changes In Gia1 Induced
By Gtp Hydrolysis
pdb|1GFI|A Chain A, Structures Of Active Conformations Of Gi Alpha 1 And The
Mechanism Of Gtp Hydrolysis
pdb|1GIA|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 13/96 (13%)
Query: 34 YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----------RIGKAKQEF 83
+K++ F ++DVGGQ R W H F +I+ V D + R+ ++ + F
Sbjct: 190 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 249
Query: 84 QAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 116
+I + + ++ I++F NK+D+ K +P+ +C
Sbjct: 250 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 285
>pdb|4G5O|A Chain A, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|B Chain B, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|C Chain C, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|D Chain D, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
Length = 330
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 13/96 (13%)
Query: 34 YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----------RIGKAKQEF 83
+K++ F ++DVGGQ R W H F +I+ V D + R+ ++ + F
Sbjct: 167 FKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 226
Query: 84 QAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 116
+I + + + I++F NK+D+ K +P+ +C
Sbjct: 227 DSICNNKWFTETSIILFLNKKDLFEEKIKRSPLTIC 262
>pdb|2IK8|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
pdb|2IK8|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
Length = 324
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 13/96 (13%)
Query: 34 YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----------RIGKAKQEF 83
+K++ F ++DVGGQ R W H F +I+ V D + R+ ++ + F
Sbjct: 161 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 220
Query: 84 QAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 116
+I + + ++ I++F NK+D+ K +P+ +C
Sbjct: 221 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 256
>pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|1KJY|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
Length = 325
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 13/96 (13%)
Query: 34 YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----------RIGKAKQEF 83
+K++ F ++DVGGQ R W H F +I+ V D + R+ ++ + F
Sbjct: 162 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 221
Query: 84 QAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 116
+I + + ++ I++F NK+D+ K +P+ +C
Sbjct: 222 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 257
>pdb|1Y3A|A Chain A, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|B Chain B, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|C Chain C, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|D Chain D, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
Length = 329
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 13/96 (13%)
Query: 34 YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----------RIGKAKQEF 83
+K++ F ++DVGGQ R W H F +I+ V D + R+ ++ + F
Sbjct: 166 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 225
Query: 84 QAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 116
+I + + ++ I++F NK+D+ K +P+ +C
Sbjct: 226 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 261
>pdb|2IHB|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs10 And Activated Gi Alpha 3
Length = 323
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 13/96 (13%)
Query: 34 YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----------RIGKAKQEF 83
+K++ F ++DVGGQ R W H F +I+ V D + R+ ++ + F
Sbjct: 160 FKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 219
Query: 84 QAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 116
+I + + + I++F NK+D+ K +P+ +C
Sbjct: 220 DSICNNKWFTETSIILFLNKKDLFEEKIKRSPLTIC 255
>pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
pdb|2XNS|B Chain B, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
Length = 327
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 13/96 (13%)
Query: 34 YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----------RIGKAKQEF 83
+K++ F ++DVGGQ R W H F +I+ V D + R+ ++ + F
Sbjct: 164 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 223
Query: 84 QAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 116
+I + + ++ I++F NK+D+ K +P+ +C
Sbjct: 224 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 259
>pdb|3FFA|A Chain A, Crystal Structure Of A Fast Activating G Protein Mutant
pdb|3FFB|A Chain A, Gi-Alpha-1 Mutant In Gdp Bound Form
Length = 360
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 13/96 (13%)
Query: 34 YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----------RIGKAKQEF 83
+K++ F ++DVGGQ R W H F +I+ V D + R+ ++ + F
Sbjct: 197 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 256
Query: 84 QAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 116
+I + + ++ I++F NK+D+ K +P+ +C
Sbjct: 257 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 292
>pdb|2GTP|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
pdb|2GTP|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
Length = 323
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 13/96 (13%)
Query: 34 YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----------RIGKAKQEF 83
+K++ F ++DVGGQ R W H F +I+ V D + R+ ++ + F
Sbjct: 160 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 219
Query: 84 QAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 116
+I + + ++ I++F NK+D+ K +P+ +C
Sbjct: 220 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 255
>pdb|3QE0|A Chain A, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|B Chain B, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|C Chain C, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
Length = 325
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 13/96 (13%)
Query: 34 YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----------RIGKAKQEF 83
+K++ F ++DVGGQ R W H F +I+ V D + R+ ++ + F
Sbjct: 162 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 221
Query: 84 QAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 116
+I + + ++ I++F NK+D+ K +P+ +C
Sbjct: 222 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 257
>pdb|4G5R|A Chain A, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|B Chain B, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|C Chain C, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|D Chain D, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5S|A Chain A, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|B Chain B, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|C Chain C, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|D Chain D, Structure Of Lgn Gl3GALPHAI3 COMPLEX
Length = 330
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 13/96 (13%)
Query: 34 YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----------RIGKAKQEF 83
+K++ F ++DVGGQ R W H F +I+ V D + R+ ++ + F
Sbjct: 167 FKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 226
Query: 84 QAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 116
+I + + + I++F NK+D+ K +P+ +C
Sbjct: 227 DSICNNKWFTETSIILFLNKKDLFEEKIKRSPLTIC 262
>pdb|4G5Q|A Chain A, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|B Chain B, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|C Chain C, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|D Chain D, Structure Of Lgn Gl4GALPHAI1 COMPLEX
Length = 330
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 13/96 (13%)
Query: 34 YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----------RIGKAKQEF 83
+K++ F ++DVGGQ R W H F +I+ V D + R+ ++ + F
Sbjct: 167 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 226
Query: 84 QAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 116
+I + + ++ I++F NK+D+ K +P+ +C
Sbjct: 227 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 262
>pdb|2G83|A Chain A, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
pdb|2G83|B Chain B, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
Length = 313
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 13/96 (13%)
Query: 34 YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----------RIGKAKQEF 83
+K++ F ++DVGGQ R W H F +I+ V D + R+ ++ + F
Sbjct: 159 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 218
Query: 84 QAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 116
+I + + ++ I++F NK+D+ K +P+ +C
Sbjct: 219 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 254
>pdb|1BH2|A Chain A, A326s Mutant Of An Inhibitory Alpha Subunit
Length = 315
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 13/96 (13%)
Query: 34 YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----------RIGKAKQEF 83
+K++ F ++DVGGQ R W H F +I+ V D + R+ ++ + F
Sbjct: 160 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 219
Query: 84 QAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 116
+I + + ++ I++F NK+D+ K +P+ +C
Sbjct: 220 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 255
>pdb|1AS0|A Chain A, Gtp-Gamma-S Bound G42v Gia1
pdb|1AS2|A Chain A, Gdp+pi Bound G42v Gia1
pdb|1AS3|A Chain A, Gdp Bound G42v Gia1
Length = 353
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 13/96 (13%)
Query: 34 YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----------RIGKAKQEF 83
+K++ F ++DVGGQ R W H F +I+ V D + R+ ++ + F
Sbjct: 190 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 249
Query: 84 QAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 116
+I + + ++ I++F NK+D+ K +P+ +C
Sbjct: 250 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 285
>pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Alf4 And Gdp
pdb|1SVS|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Gppnhp
Length = 353
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 13/96 (13%)
Query: 34 YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----------RIGKAKQEF 83
+K++ F ++DVGGQ R W H F +I+ V D + R+ ++ + F
Sbjct: 190 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 249
Query: 84 QAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 116
+I + + ++ I++F NK+D+ K +P+ +C
Sbjct: 250 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 285
>pdb|2ZJY|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Alf4 And Gdp
pdb|2ZJZ|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
pdb|2ZJZ|B Chain B, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
Length = 356
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 13/96 (13%)
Query: 34 YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----------RIGKAKQEF 83
+K++ F ++DVGGQ R W H F +I+ V D + R+ ++ + F
Sbjct: 193 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 252
Query: 84 QAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 116
+I + + ++ I++F NK+D+ K +P+ +C
Sbjct: 253 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 288
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Query: 35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLN 94
K + +WD GQE+ R + Y+ G+I V D D+E KQ Q I D +
Sbjct: 56 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEI--DRYASE 113
Query: 95 SV-ILVFANKQDMKGA-----MTPMEVCEGLGL 121
+V L+ NK D+ T E + LG+
Sbjct: 114 NVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGI 146
>pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2ODE|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2V4Z|A Chain A, The Crystal Structure Of The Human G-Protein Subunit Alpha
( Gnai3) In Complex With An Engineered Regulator Of G-
Protein Signaling Type 2 Domain (Rgs2)
Length = 350
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 13/96 (13%)
Query: 34 YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----------RIGKAKQEF 83
+K++ F ++DVGGQ R W H F +I+ V D + R+ ++ + F
Sbjct: 190 FKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 249
Query: 84 QAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 116
+I + + + I++F NK+D+ K +P+ +C
Sbjct: 250 DSICNNKWFTETSIILFLNKKDLFEEKIKRSPLTIC 285
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Query: 35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLN 94
K + +WD GQE+ R + Y+ G+I V D D+E KQ Q I D +
Sbjct: 56 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEI--DRYASE 113
Query: 95 SV-ILVFANKQDMKGA-----MTPMEVCEGLGL 121
+V L+ NK D+ T E + LG+
Sbjct: 114 NVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGI 146
>pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|B Chain B, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|A Chain A, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation
Length = 356
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 13/96 (13%)
Query: 34 YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----------RIGKAKQEF 83
+K++ F ++DVGGQ R W H F +I+ V D + R+ ++ F
Sbjct: 193 FKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMHLF 252
Query: 84 QAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 116
+I + + ++ I++F NK+D+ K +P+ +C
Sbjct: 253 NSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 288
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 32 VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPF 91
++ K V +WD GQE+ R + Y+ G+I V D DR+ KQ Q I D +
Sbjct: 53 LENKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEI--DRY 110
Query: 92 MLNSV-ILVFANKQDM 106
+ +V L+ NK D+
Sbjct: 111 AMENVNKLLVGNKCDL 126
>pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQJ|D Chain D, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|A Chain A, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|C Chain C, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
Length = 325
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 50/99 (50%), Gaps = 13/99 (13%)
Query: 31 KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----------RIGKAK 80
+ +K++ F ++DVGGQ R W H F +I+ V D + R+ ++
Sbjct: 159 QFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESM 218
Query: 81 QEFQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 116
+ F +I + + ++ I++F NK+D+ K +P+ +C
Sbjct: 219 KLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 257
>pdb|1GOT|A Chain A, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
Length = 350
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 13/96 (13%)
Query: 34 YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV----------DSLDRERIGKAKQEF 83
+K++ F +DVGGQ R W H F +I+ V + + R ++ + F
Sbjct: 187 FKDLNFRXFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEXNRXHESXKLF 246
Query: 84 QAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 116
+I + + ++ I++F NK+D+ K +P+ +C
Sbjct: 247 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 282
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Query: 35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLN 94
K + +WD GQE+ R + Y+ G+I V D D+E KQ Q I D +
Sbjct: 46 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASE 103
Query: 95 SV-ILVFANKQDMKGA-----MTPMEVCEGLGL 121
+V L+ NK D+ T E + LG+
Sbjct: 104 NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGI 136
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Query: 35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLN 94
K + +WD GQE+ R + Y+ G+I V D D+E KQ Q I D +
Sbjct: 53 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASE 110
Query: 95 SV-ILVFANKQDMKGA-----MTPMEVCEGLGL 121
+V L+ NK D+ T E + LG+
Sbjct: 111 NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGI 143
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Query: 35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLN 94
K + +WD GQE+ R + Y+ G+I V D D+E KQ Q I D +
Sbjct: 53 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASE 110
Query: 95 SV-ILVFANKQDMKGA-----MTPMEVCEGLGL 121
+V L+ NK D+ T E + LG+
Sbjct: 111 NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGI 143
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Query: 35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLN 94
K + +WD GQE+ R + Y+ G+I V D D+E KQ Q I D +
Sbjct: 80 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASE 137
Query: 95 SV-ILVFANKQDMKGA-----MTPMEVCEGLGL 121
+V L+ NK D+ T E + LG+
Sbjct: 138 NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGI 170
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Query: 35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLN 94
K + +WD GQE+ R + Y+ G+I V D D+E KQ Q I D +
Sbjct: 63 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASE 120
Query: 95 SV-ILVFANKQDMKGA-----MTPMEVCEGLGL 121
+V L+ NK D+ T E + LG+
Sbjct: 121 NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGI 153
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Query: 35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLN 94
K + +WD GQE+ R + Y+ G+I V D D+E KQ Q I D +
Sbjct: 72 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASE 129
Query: 95 SV-ILVFANKQDMKGA-----MTPMEVCEGLGL 121
+V L+ NK D+ T E + LG+
Sbjct: 130 NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGI 162
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Query: 35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLN 94
K + +WD GQE+ R + Y+ G+I V D D+E KQ Q I D +
Sbjct: 63 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASE 120
Query: 95 SV-ILVFANKQDMKGA-----MTPMEVCEGLGL 121
+V L+ NK D+ T E + LG+
Sbjct: 121 NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGI 153
>pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GIT|A Chain A, Structure Of Gtp-Binding Protein
Length = 353
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 13/96 (13%)
Query: 34 YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----------RIGKAKQEF 83
+K++ F ++DVG Q R W H F +I+ V D + R+ ++ + F
Sbjct: 190 FKDLHFKMFDVGAQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 249
Query: 84 QAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 116
+I + + ++ I++F NK+D+ K +P+ +C
Sbjct: 250 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 285
>pdb|3UMS|A Chain A, Crystal Structure Of The G202a Mutant Of Human G-Alpha-I1
Length = 354
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 13/96 (13%)
Query: 34 YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----------RIGKAKQEF 83
+K++ F ++DV GQ R W H F +I+ V D + R+ ++ + F
Sbjct: 191 FKDLHFKMFDVAGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 250
Query: 84 QAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 116
+I + + ++ I++F NK+D+ K +P+ +C
Sbjct: 251 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 286
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLN 94
K + +WD GQE+ R + Y+ G+I V D D+E KQ Q I D +
Sbjct: 45 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASE 102
Query: 95 SV-ILVFANKQDM 106
+V L+ NK D+
Sbjct: 103 NVNKLLVGNKCDL 115
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%)
Query: 35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI 86
K + +WD GQE+ R + Y+ G+I V D D+E KQ Q I
Sbjct: 55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI 106
>pdb|1GIL|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 13/96 (13%)
Query: 34 YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----------RIGKAKQEF 83
+K++ F ++DVGG R W H F +I+ V D + R+ ++ + F
Sbjct: 190 FKDLHFKMFDVGGLRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 249
Query: 84 QAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 116
+I + + ++ I++F NK+D+ K +P+ +C
Sbjct: 250 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 285
>pdb|3UMR|A Chain A, Crystal Structure Of The G202d Mutant Of Human G-Alpha-I1
Length = 354
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 13/96 (13%)
Query: 34 YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----------RIGKAKQEF 83
+K++ F ++DV GQ R W H F +I+ V D + R+ ++ + F
Sbjct: 191 FKDLHFKMFDVDGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 250
Query: 84 QAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 116
+I + ++ I++F NK+D+ K +P+ +C
Sbjct: 251 DSICNNKCFTDTSIILFLNKKDLFEEKIKKSPLTIC 286
>pdb|1CUL|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
Length = 380
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
Query: 31 KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDS-----LDRE-----RIGKAK 80
K Q V F ++DVGGQ R W FN+ +I+VV S + RE R+ +A
Sbjct: 197 KFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEAL 256
Query: 81 QEFQAIIKDPFMLNSVILVFANKQDM 106
F++I + ++ +++F NKQD+
Sbjct: 257 NLFKSIWNNRWLRTISVILFLNKQDL 282
>pdb|1AZS|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
pdb|1AZT|A Chain A, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|1AZT|B Chain B, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|3C14|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
Length = 402
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
Query: 31 KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDS-----LDRE-----RIGKAK 80
K Q V F ++DVGGQ R W FN+ +I+VV S + RE R+ +A
Sbjct: 211 KFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEAL 270
Query: 81 QEFQAIIKDPFMLNSVILVFANKQDM 106
F++I + ++ +++F NKQD+
Sbjct: 271 NLFKSIWNNRWLRTISVILFLNKQDL 296
>pdb|3SN6|A Chain A, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 380
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
Query: 31 KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDS-----LDRE-----RIGKAK 80
K Q V F ++DVGGQ R W FN+ +I+VV S + RE R+ +A
Sbjct: 197 KFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEAL 256
Query: 81 QEFQAIIKDPFMLNSVILVFANKQDM 106
F++I + ++ +++F NKQD+
Sbjct: 257 NLFKSIWNNRWLRTISVILFLNKQDL 282
>pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1U0H|C Chain C, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|C Chain C, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3G82|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|C Chain C, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 394
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
Query: 31 KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDS-----LDRE-----RIGKAK 80
K Q V F ++DVGGQ R W FN+ +I+VV S + RE R+ +A
Sbjct: 211 KFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEAL 270
Query: 81 QEFQAIIKDPFMLNSVILVFANKQDM 106
F++I + ++ +++F NKQD+
Sbjct: 271 NLFKSIWNNRWLRTISVILFLNKQDL 296
>pdb|1CJK|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1TL7|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
Length = 402
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
Query: 31 KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDS-----LDRE-----RIGKAK 80
K Q V F ++DVGGQ R W FN+ +I+VV S + RE R+ +A
Sbjct: 211 KFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEAL 270
Query: 81 QEFQAIIKDPFMLNSVILVFANKQDM 106
F++I + ++ +++F NKQD+
Sbjct: 271 NLFKSIWNNRWLRTISVILFLNKQDL 296
>pdb|4FID|A Chain A, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
pdb|4FID|B Chain B, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
Length = 340
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 10/82 (12%)
Query: 35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV----------DSLDRERIGKAKQEFQ 84
K++ F + DVGGQ R W +F++ D I+V + + R+ ++ F+
Sbjct: 159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDXKLYEDGNTSRLTESIAVFK 218
Query: 85 AIIKDPFMLNSVILVFANKQDM 106
I + F+ +V L+F NK D+
Sbjct: 219 DIXTNEFLKGAVKLIFLNKXDL 240
>pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
pdb|1SHZ|D Chain D, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
Length = 340
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 13/96 (13%)
Query: 34 YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----------RIGKAKQEF 83
+K++ F ++DVGGQ R W F +I+ V D + R+ ++ + F
Sbjct: 177 FKDLHFKMFDVGGQRSERKKWFECFEGVTAIIFCVALSDYDQVLMEDRQTNRMHESMKLF 236
Query: 84 QAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 116
+I + + ++ I++F NK+D+ K +P+ +C
Sbjct: 237 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 272
>pdb|1ZCB|A Chain A, Crystal Structure Of G Alpha 13 In Complex With Gdp
pdb|3AB3|A Chain A, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
pdb|3AB3|C Chain C, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
Length = 362
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 10/84 (11%)
Query: 33 QYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL--------DRE--RIGKAKQE 82
+ KNV F + DVGGQ R W F++ ++++V S DR+ R+ ++
Sbjct: 197 EIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNI 256
Query: 83 FQAIIKDPFMLNSVILVFANKQDM 106
F+ I+ + N I++F NK D+
Sbjct: 257 FETIVNNRVFSNVSIILFLNKTDL 280
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLN 94
K V +WD GQE+ R + Y+ G+I V D D KQ F+ + +
Sbjct: 50 KKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKT-VNEHANDE 108
Query: 95 SVILVFANKQDMKGAMTPMEVCEGLG 120
+ +L+ NK DM+ + + E L
Sbjct: 109 AQLLLVGNKSDMETRVVTADQGEALA 134
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 32 VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPF 91
+ K V +WD GQE+ R + Y+ G+I V D D KQ F+ + +
Sbjct: 64 INGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKT-VNEHA 122
Query: 92 MLNSVILVFANKQDMKGAMTPMEVCEGLG 120
+ +L+ NK DM+ + + E L
Sbjct: 123 NDEAQLLLVGNKSDMETRVVTADQGEALA 151
>pdb|2XTZ|A Chain A, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|B Chain B, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|C Chain C, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
Length = 354
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 13/93 (13%)
Query: 38 IFTVWDVGGQEKLRPLWRHYFNNTDGLIY----------VVDSLDRERIGKAKQEFQAII 87
++ ++DVGGQ R W H F +I+ + + + R+ + K+ F ++
Sbjct: 184 VYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL 243
Query: 88 KDPFMLNSVILVFANKQDM---KGAMTPMEVCE 117
K P + ++F NK D+ K P+ VCE
Sbjct: 244 KQPCFEKTSFMLFLNKFDIFEKKVLDVPLNVCE 276
>pdb|3CX7|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp-Alf4
pdb|3CX8|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gtp-Gamma-S
Length = 338
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 10/84 (11%)
Query: 33 QYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL--------DRE--RIGKAKQE 82
+ KNV F + DVGGQ R W F++ ++++V S DR+ R+ ++
Sbjct: 173 EIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNI 232
Query: 83 FQAIIKDPFMLNSVILVFANKQDM 106
F+ I+ + N I++F NK D+
Sbjct: 233 FETIVNNRVFSNVSIILFLNKTDL 256
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 32 VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPF 91
+ K V +WD GQE+ R + Y+ G+I V D D KQ F+ + +
Sbjct: 51 INGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKT-VNEHA 109
Query: 92 MLNSVILVFANKQDMKGAMTPMEVCEGLG 120
+ +L+ NK DM+ + + E L
Sbjct: 110 NDEAQLLLVGNKSDMETRVVTADQGEALA 138
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 14/124 (11%)
Query: 35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFML- 93
K V +WD GQE+ R + R Y+ G + V D RE A + D L
Sbjct: 72 KTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRE----TYNSLAAWLTDARTLA 127
Query: 94 --NSVILVFANKQDM--KGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
N V+++ NK+D+ + +T +E F +N ++ T AL G+ + E
Sbjct: 128 SPNIVVILCGNKKDLDPEREVTFLEASR----FAQENELMFLE-TSALTGENVEEAFLKC 182
Query: 150 ASTL 153
A T+
Sbjct: 183 ARTI 186
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Query: 35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLN 94
K V +WD GQE+ R + Y+ G+I V D D KQ F+ + +
Sbjct: 50 KKVKLQIWDTAGQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKT-VNEHANDE 108
Query: 95 SVILVFANKQDMKGAMTPMEVCEGLG 120
+ +L+ NK D + + + E L
Sbjct: 109 AQLLLVGNKSDXETRVVTADQGEALA 134
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 32 VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPF 91
V + + +WD GQE+ R + + YF DG++ + D + E+ +E+ +I+D
Sbjct: 72 VDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYD-VTCEKSFLNIREWVDMIEDAA 130
Query: 92 MLNSVILVFANKQDMK 107
I++ NK D++
Sbjct: 131 HETVPIMLVGNKADIR 146
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 20/120 (16%)
Query: 35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI---IKDPF 91
K V +WD GQE+ R + R Y+ G + V D RE + A+ + D
Sbjct: 57 KYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRET-------YNALTNWLTDAR 109
Query: 92 ML---NSVILVFANKQDMKG--AMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL 146
ML N VI++ NK+D+ +T +E F +N ++ T AL G+ + E
Sbjct: 110 MLASQNIVIILCGNKKDLDADREVTFLEASR----FAQENELMFLE-TSALTGENVEEAF 164
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 13/78 (16%)
Query: 35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI---IKDPF 91
K V +WD GQE+ R + R Y+ G + V D RE + A+ + D
Sbjct: 58 KYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRE-------TYNALTNWLTDAR 110
Query: 92 ML---NSVILVFANKQDM 106
ML N VI++ NK+D+
Sbjct: 111 MLASQNIVIILCGNKKDL 128
>pdb|1TND|A Chain A, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|B Chain B, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|C Chain C, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TAD|A Chain A, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|B Chain B, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|C Chain C, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAG|A Chain A, Structural Determinants For Activation Of The
Alpha-Subunit Of A Heterotrimeric G Protein
Length = 324
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Query: 31 KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYV----------VDSLDRERIGKAK 80
+ +K++ F ++DVGGQ R W H F +I++ V+ + R+ ++
Sbjct: 158 QFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTCIIFIAALSAYDMVLVEDDEVNRMHESL 217
Query: 81 QEFQAIIKDPFMLNSVILVFANKQDM 106
F +I + + I++F NK+D+
Sbjct: 218 HLFNSICNHRYFATTSIVLFLNKKDV 243
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 36 NVI-FTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR---ERIGKAKQEFQAIIKDPF 91
NVI F VWD GQEK L Y+ G I D R + + + +EFQA++ +
Sbjct: 59 NVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGN-- 116
Query: 92 MLNSVILVFANKQDMK 107
+ I+V ANK D+K
Sbjct: 117 --EAPIVVCANKIDIK 130
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Query: 35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLN 94
K V +WD GQE+ R + Y+ G+I V D D KQ F+ + +
Sbjct: 50 KKVKLQLWDTAGQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKT-VNEHANDE 108
Query: 95 SVILVFANKQDMKGAMTPMEVCEGLG 120
+ +L+ NK D + + + E L
Sbjct: 109 AQLLLVGNKSDXETRVVTADQGEALA 134
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLN 94
K + +WD GQE R + R Y+ G + V D RE + + N
Sbjct: 68 KQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLED-ARQHSSSN 126
Query: 95 SVILVFANKQDMK 107
VI++ NK D++
Sbjct: 127 MVIMLIGNKSDLE 139
>pdb|1ZCA|A Chain A, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
And Alf4-
pdb|1ZCA|B Chain B, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
And Alf4-
Length = 359
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 10/82 (12%)
Query: 35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL--------DRE--RIGKAKQEFQ 84
K + F + DVGGQ R W F+ ++++V S DR R+ ++ F+
Sbjct: 197 KKIPFKMVDVGGQRSQRQKWFQCFDGITSILFMVSSSEYDQVLMEDRRTNRLVESMNIFE 256
Query: 85 AIIKDPFMLNSVILVFANKQDM 106
I+ + N I++F NK D+
Sbjct: 257 TIVNNKLFFNVSIILFLNKMDL 278
>pdb|3CX6|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp
Length = 338
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 10/84 (11%)
Query: 33 QYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL--------DRE--RIGKAKQE 82
+ KNV F + DVGG R W F++ ++++V S DR+ R+ ++
Sbjct: 173 EIKNVPFKMVDVGGLRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNI 232
Query: 83 FQAIIKDPFMLNSVILVFANKQDM 106
F+ I+ + N I++F NK D+
Sbjct: 233 FETIVNNRVFSNVSIILFLNKTDL 256
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Query: 35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLN 94
K V +WD GQE+ R + Y+ G I + D + E A Q++ IK N
Sbjct: 70 KRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFN-AVQDWATQIKTYSWDN 128
Query: 95 SVILVFANKQDMKGA-MTPME----VCEGLGL 121
+ +++ NK DM+ + P E + E LG
Sbjct: 129 AQVILVGNKCDMEEERVVPTEKGQLLAEQLGF 160
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 31 KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDP 90
++Q K V +WD GQE+ R + + Y+ + +G I D R + + K
Sbjct: 72 EIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYA 131
Query: 91 FMLNSVILVFANKQDM 106
N V L+ NK D+
Sbjct: 132 GS-NIVQLLIGNKSDL 146
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLN 94
K V +WD GQE+ L Y+ +++G I V D D + K K + + K + N
Sbjct: 67 KRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRK--MLGN 124
Query: 95 SVIL-VFANKQDMK 107
+ L + NK D++
Sbjct: 125 EICLCIVGNKIDLE 138
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLN 94
K V +WD GQE+ L Y+ +++G I V D D + K K + + K + N
Sbjct: 53 KRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRK--MLGN 110
Query: 95 SVIL-VFANKQDMK 107
+ L + NK D++
Sbjct: 111 EICLCIVGNKIDLE 124
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLN 94
K + +WD GQE+ R + Y+ G I + D + E A Q++ IK N
Sbjct: 52 KRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFN-AVQDWSTQIKTYSWDN 110
Query: 95 SVILVFANKQDMK 107
+ +L+ NK DM+
Sbjct: 111 AQVLLVGNKCDME 123
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLN 94
K V +WD GQE+ L Y+ +++G I V D D + K K + + K + N
Sbjct: 53 KRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRK--MLGN 110
Query: 95 SVIL-VFANKQDMK 107
+ L + NK D++
Sbjct: 111 EICLCIVGNKIDLE 124
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 31 KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDP 90
+V + + +WD GQE+ R + R Y+ G + V D R + + D
Sbjct: 58 EVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRR----STYNHLSSWLTDA 113
Query: 91 FML---NSVILVFANKQDMKG 108
L N+VI++ NK D++
Sbjct: 114 RNLTNPNTVIILIGNKADLEA 134
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 37 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 96
V F +WD GQE+ L Y+ I V D + E +AK + + + N V
Sbjct: 56 VKFEIWDTAGQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA-SPNIV 114
Query: 97 ILVFANKQDM 106
I + NK D+
Sbjct: 115 IALSGNKADL 124
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 37 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 96
V F +WD GQE+ L Y+ I V D + E +AK + + + N V
Sbjct: 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA-SPNIV 113
Query: 97 ILVFANKQDM 106
I + NK D+
Sbjct: 114 IALSGNKADL 123
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 37 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 96
V F +WD GQE+ L Y+ I V D + E +AK + + + N V
Sbjct: 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA-SPNIV 113
Query: 97 ILVFANKQDM 106
I + NK D+
Sbjct: 114 IALSGNKADL 123
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 37 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 96
V F +WD GQE+ L Y+ I V D + E +AK + + + N V
Sbjct: 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA-SPNIV 113
Query: 97 ILVFANKQDM 106
I + NK D+
Sbjct: 114 IALSGNKADL 123
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 15/80 (18%)
Query: 35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGK-------AKQEFQAII 87
K + +WD GQE R + R Y+ G + V D R+ A+Q +
Sbjct: 57 KQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNS-- 114
Query: 88 KDPFMLNSVILVFANKQDMK 107
N VI++ NK D++
Sbjct: 115 ------NMVIMLIGNKSDLE 128
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 37 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 96
V F +WD GQE+ L Y+ I V D + E +AK + + + N V
Sbjct: 56 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA-SPNIV 114
Query: 97 ILVFANKQDM 106
I + NK D+
Sbjct: 115 IALSGNKADL 124
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 37 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 96
V F +WD GQE+ L Y+ I V D + E +AK + + + N V
Sbjct: 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA-SPNIV 113
Query: 97 ILVFANKQDM 106
I + NK D+
Sbjct: 114 IALSGNKADL 123
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 37 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 96
V F +WD GQE+ L Y+ I V D + E +AK + + + N V
Sbjct: 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA-SPNIV 113
Query: 97 ILVFANKQDM 106
I + NK D+
Sbjct: 114 IALSGNKADL 123
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 37 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 96
V F +WD GQE+ L Y+ I V D + E +AK + + + N V
Sbjct: 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA-SPNIV 113
Query: 97 ILVFANKQDM 106
I + NK D+
Sbjct: 114 IALSGNKADL 123
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 13/78 (16%)
Query: 35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI---IKDPF 91
K V +WD G E+ R + R Y+ G + V D RE + A+ + D
Sbjct: 55 KYVKLQIWDTAGLERFRSVTRSYYRGAAGALLVYDITSRE-------TYNALTNWLTDAR 107
Query: 92 ML---NSVILVFANKQDM 106
ML N VI++ NK+D+
Sbjct: 108 MLASQNIVIILCGNKKDL 125
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Query: 37 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIY---VVDSLDRERIGKAKQEF--QAIIKDPF 91
V +WD GQE+ R L ++ +D + V DS + + K+EF A +K+P
Sbjct: 60 VTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPE 119
Query: 92 MLNSVILVFANKQDMKGAMTPMEVCEG 118
VIL NK D+K E +
Sbjct: 120 SFPFVIL--GNKTDIKERQVSTEEAQA 144
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 37 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAK---QEFQAIIKDPFML 93
V F +WD GQE+ L Y+ I V D ++ +AK QE QA +P
Sbjct: 61 VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQA-QGNP--- 116
Query: 94 NSVILVFANKQDM 106
N V+ + NK D+
Sbjct: 117 NMVMALAGNKSDL 129
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 36 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAK 80
V F +WD GQE+ L Y+ I V D ++E +AK
Sbjct: 56 TVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAK 100
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 34.7 bits (78), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query: 32 VQYKNVI--FTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
VQY+N + F +WD GQE+ R L Y+ + I V D E K + ++
Sbjct: 47 VQYQNELHKFLIWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRE-LRQ 105
Query: 90 PFMLNSVILVFANKQDMKGAMTPME 114
+ V+ + NK D+ ME
Sbjct: 106 HGPPSIVVAIAGNKCDLTDVREVME 130
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 34.3 bits (77), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 41 VWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR---ERIGKAKQEFQAIIKDPFMLNSVI 97
+WD GQE+ R + Y+ G + V D + E I K +E ++D N VI
Sbjct: 61 IWDTAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKE----LRDNADSNIVI 116
Query: 98 LVFANKQDMK 107
L+ NK D+K
Sbjct: 117 LLVGNKSDLK 126
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 34.3 bits (77), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 31 KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVD---SLDRERIGKAKQEFQAII 87
+V K + +WD GQE+ R + Y+ G + V D L E + + +E +
Sbjct: 72 QVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKE----L 127
Query: 88 KDPFMLNSVILVFANKQDMK 107
+D N VI++ NK D++
Sbjct: 128 RDHADSNIVIMLVGNKSDLR 147
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 34.3 bits (77), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 31 KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVD---SLDRERIGKAKQEFQAII 87
+V K + +WD GQE+ R + Y+ G + V D L E + + +E +
Sbjct: 63 QVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKE----L 118
Query: 88 KDPFMLNSVILVFANKQDMK 107
+D N VI++ NK D++
Sbjct: 119 RDHADSNIVIMLVGNKSDLR 138
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 34.3 bits (77), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 36 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNS 95
V F +WD GQE+ L Y+ I V D + + +AK + + + N
Sbjct: 53 TVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQA-SPNI 111
Query: 96 VILVFANKQDM 106
VI + NK D+
Sbjct: 112 VIALAGNKADL 122
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 34.3 bits (77), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 36 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNS 95
V F +WD GQE+ L Y+ I V D + + +AK + + + N
Sbjct: 51 TVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQA-SPNI 109
Query: 96 VILVFANKQDM 106
VI + NK D+
Sbjct: 110 VIALAGNKADL 120
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 33.9 bits (76), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLN 94
K + +WD GQE+ R + Y+ G + + D ++E A Q++ IK N
Sbjct: 69 KRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFA-AVQDWATQIKTYSWDN 127
Query: 95 SVILVFANKQDMKGA-MTPME 114
+ +++ NK D++ + P E
Sbjct: 128 AQVILVGNKCDLEDERVVPAE 148
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 33.9 bits (76), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
Query: 31 KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR---ERIGKAKQEF--QA 85
+V + V +WD GQE+ + L ++ D + DR E +G ++EF A
Sbjct: 50 EVDGRFVTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYA 109
Query: 86 IIKDPFMLNSVILVFANKQDMKGAMTPME 114
+KDP V+L NK D + E
Sbjct: 110 DVKDPEHFPFVVL--GNKVDKEDRQVTTE 136
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 33.9 bits (76), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Query: 31 KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDP 90
+V + + +WD GQ + R + R Y+ G + V D R + + D
Sbjct: 73 EVSGQKIKLQIWDTAGQGRFRAVTRSYYRGAAGALMVYDITRR----STYNHLSSWLTDA 128
Query: 91 FML---NSVILVFANKQDMKG 108
L N+VI++ NK D++
Sbjct: 129 RNLTNPNTVIILIGNKADLEA 149
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 33.5 bits (75), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 31/70 (44%)
Query: 37 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 96
V +WD GQE+ R L +F + G + + D ++ + + + + N
Sbjct: 84 VHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD 143
Query: 97 ILVFANKQDM 106
I++ NK D+
Sbjct: 144 IVLIGNKADL 153
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 33.5 bits (75), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 31 KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQ 81
++ + V +WD GQE+ R + Y+ T G+I V D E K+
Sbjct: 52 EINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKR 102
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 33.1 bits (74), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
Query: 37 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 96
V +WD GQE+ R L Y ++ I V D +R+ + Q I+ + + +
Sbjct: 50 VRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGK-DVI 108
Query: 97 ILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWH 130
I + NK D+ G + + EG N +H
Sbjct: 109 IALVGNKTDL-GDLRKVTYEEGXQKAQEYNTXFH 141
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 32.7 bits (73), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Query: 37 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV 96
V F +WD G E+ L Y+ I V D + E +AK + + + N V
Sbjct: 54 VKFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA-SPNIV 112
Query: 97 ILVFANKQDM 106
I + NK D+
Sbjct: 113 IALSGNKADL 122
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 7/87 (8%)
Query: 37 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIY---VVDSLDRERIGKAKQEF--QAIIKDPF 91
V +WD GQE+ R L ++ +D + V DS + + K+EF A +K+P
Sbjct: 56 VTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPE 115
Query: 92 MLNSVILVFANKQDMKGAMTPMEVCEG 118
VIL NK D+ E +
Sbjct: 116 SFPFVIL--GNKIDISERQVSTEEAQA 140
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 7/87 (8%)
Query: 37 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIY---VVDSLDRERIGKAKQEF--QAIIKDPF 91
V +WD GQE+ R L ++ +D + V DS + + K+EF A +K+P
Sbjct: 58 VTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPE 117
Query: 92 MLNSVILVFANKQDMKGAMTPMEVCEG 118
VIL NK D+ E +
Sbjct: 118 SFPFVIL--GNKIDISERQVSTEEAQA 142
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 39 FTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE 74
+WD GQE+ R L Y+ G+I V D R+
Sbjct: 66 LAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRD 101
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 31 KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVD---SLDRERIGKAKQEFQAII 87
+V K + +WD GQE+ R + Y+ G + V D L E + + +E +
Sbjct: 48 QVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKE----L 103
Query: 88 KDPFMLNSVILVFANKQDMK 107
+D N VI++ NK D++
Sbjct: 104 RDHADSNIVIMLVGNKSDLR 123
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE 74
K + +WD GQE+ + Y+ + G+I V D +E
Sbjct: 73 KKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKE 112
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 31 KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVD 69
++ + V +WD GQE+ R + + Y+ + + LI D
Sbjct: 69 EINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYD 107
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 11/83 (13%)
Query: 31 KVQYKNVIFTVWDVGGQE---KLRPLWRHYFNNTDGLI--YVVDSLDRERIGKAKQEFQA 85
+V K V +WD GQE +LRPL + +TD ++ + VDS D + +++
Sbjct: 67 EVDGKQVELALWDTAGQEDYDRLRPL---SYPDTDVILMCFSVDSPD--SLENIPEKWVP 121
Query: 86 IIKDPFMLNSVILVFANKQDMKG 108
+K F N I++ ANK+D++
Sbjct: 122 EVKH-FCPNVPIILVANKKDLRS 143
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 41 VWDVGGQEKLR-PLWRHYFNNTDGLIYVVD 69
+WD GQE+ R + +HY+ N +++V D
Sbjct: 82 LWDTAGQERFRKSMVQHYYRNVHAVVFVYD 111
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 41 VWDVGGQEKLR-PLWRHYFNNTDGLIYVVD 69
+WD GQE+ R + +HY+ N +++V D
Sbjct: 73 LWDTAGQERFRKSMVQHYYRNVHAVVFVYD 102
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 31.2 bits (69), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 36 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNS 95
V F +WD G E+ L Y+ I V D + + +AK + + + N
Sbjct: 53 TVKFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQA-SPNI 111
Query: 96 VILVFANKQDM 106
VI + NK D+
Sbjct: 112 VIALAGNKADL 122
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 32 VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQ 81
+ V F +WD GQE+ L Y+ N + V D + KA+
Sbjct: 47 INEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARH 96
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 11/82 (13%)
Query: 31 KVQYKNVIFTVWDVGGQE---KLRPLWRHYFNNTDGLI--YVVDSLDRERIGKAKQEFQA 85
+V K V +WD GQE +LRPL + +TD ++ + +DS D + +++
Sbjct: 67 EVDGKQVELALWDTAGQEDYDRLRPL---SYPDTDVILMCFSIDSPD--SLENIPEKWTP 121
Query: 86 IIKDPFMLNSVILVFANKQDMK 107
+K F N I++ NK+D++
Sbjct: 122 EVKH-FXPNVPIILVGNKKDLR 142
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 30.8 bits (68), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 11/82 (13%)
Query: 31 KVQYKNVIFTVWDVGGQE---KLRPLWRHYFNNTDGLI--YVVDSLDRERIGKAKQEFQA 85
+V K V +WD GQE +LRPL + +TD ++ + +DS D + +++
Sbjct: 47 EVDGKQVELALWDTAGQEDYDRLRPL---SYPDTDVILMCFSIDSPD--SLENIPEKWTP 101
Query: 86 IIKDPFMLNSVILVFANKQDMK 107
+K F N I++ NK+D++
Sbjct: 102 EVKH-FCPNVPIILVGNKKDLR 122
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 30.8 bits (68), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 36 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNS 95
N+ F +WD GQE+ + Y+ I V D + + +AK + N
Sbjct: 92 NIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQL---KISSNY 148
Query: 96 VILVFANKQD 105
+I++ ANK D
Sbjct: 149 IIILVANKID 158
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 30.8 bits (68), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 11/82 (13%)
Query: 31 KVQYKNVIFTVWDVGGQE---KLRPLWRHYFNNTDGLI--YVVDSLDRERIGKAKQEFQA 85
+V K V +WD GQE +LRPL + +TD ++ + +DS D + +++
Sbjct: 51 EVDGKQVELALWDTAGQEDYDRLRPL---SYPDTDVILMCFSIDSPD--SLENIPEKWTP 105
Query: 86 IIKDPFMLNSVILVFANKQDMK 107
+K F N I++ NK+D++
Sbjct: 106 EVKH-FCPNVPIILVGNKKDLR 126
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 30.8 bits (68), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 11/82 (13%)
Query: 31 KVQYKNVIFTVWDVGGQE---KLRPLWRHYFNNTDGLI--YVVDSLDRERIGKAKQEFQA 85
+V K V +WD GQE +LRPL + +TD ++ + +DS D + +++
Sbjct: 67 EVDGKQVELALWDTAGQEDYDRLRPL---SYPDTDVILMCFSIDSPD--SLENIPEKWTP 121
Query: 86 IIKDPFMLNSVILVFANKQDMK 107
+K F N I++ NK+D++
Sbjct: 122 EVKH-FCPNVPIILVGNKKDLR 142
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space
Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1)
Space Group
Length = 168
Score = 30.8 bits (68), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 31 KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE 74
+V ++V +WD GQE+ + + Y+ + V + DRE
Sbjct: 48 QVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRE 91
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 30.8 bits (68), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 11/82 (13%)
Query: 31 KVQYKNVIFTVWDVGGQE---KLRPLWRHYFNNTDGLI--YVVDSLDRERIGKAKQEFQA 85
+V K V +WD GQE +LRPL + +TD ++ + +DS D + +++
Sbjct: 47 EVDGKQVELALWDTAGQEDYDRLRPL---SYPDTDVILMCFSIDSPD--SLENIPEKWTP 101
Query: 86 IIKDPFMLNSVILVFANKQDMK 107
+K F N I++ NK+D++
Sbjct: 102 EVKH-FCPNVPIILVGNKKDLR 122
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 30.8 bits (68), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 11/82 (13%)
Query: 31 KVQYKNVIFTVWDVGGQE---KLRPLWRHYFNNTDGLI--YVVDSLDRERIGKAKQEFQA 85
+V K V +WD GQE +LRPL + +TD ++ + +DS D + +++
Sbjct: 49 EVDGKQVELALWDTAGQEDYDRLRPL---SYPDTDVILMCFSIDSPD--SLENIPEKWTP 103
Query: 86 IIKDPFMLNSVILVFANKQDMK 107
+K F N I++ NK+D++
Sbjct: 104 EVKH-FCPNVPIILVGNKKDLR 124
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 30.8 bits (68), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 11/83 (13%)
Query: 31 KVQYKNVIFTVWDVGGQE---KLRPLWRHYFNNTDGLI--YVVDSLDRERIGKAKQEFQA 85
+V K V +WD GQE +LRPL + +TD ++ + +DS D + +++
Sbjct: 47 EVDGKQVELALWDTAGQEDYDRLRPL---SYPDTDVILMCFSIDSPD--SLENIPEKWTP 101
Query: 86 IIKDPFMLNSVILVFANKQDMKG 108
+K F N I++ NK+D++
Sbjct: 102 EVKH-FCPNVPIILVGNKKDLRN 123
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 30.8 bits (68), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 11/82 (13%)
Query: 31 KVQYKNVIFTVWDVGGQE---KLRPLWRHYFNNTDGLI--YVVDSLDRERIGKAKQEFQA 85
+V K V +WD GQE +LRPL + +TD ++ + +DS D + +++
Sbjct: 49 EVDGKQVELALWDTAGQEDYDRLRPL---SYPDTDVILMCFSIDSPD--SLENIPEKWTP 103
Query: 86 IIKDPFMLNSVILVFANKQDMK 107
+K F N I++ NK+D++
Sbjct: 104 EVKH-FCPNVPIILVGNKKDLR 124
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 30.8 bits (68), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 11/83 (13%)
Query: 31 KVQYKNVIFTVWDVGGQE---KLRPLWRHYFNNTDGLI--YVVDSLDRERIGKAKQEFQA 85
+V K V +WD GQE +LRPL + +TD ++ + +DS D + +++
Sbjct: 49 EVDGKQVELALWDTAGQEDYDRLRPL---SYPDTDVILMCFSIDSPD--SLENIPEKWTP 103
Query: 86 IIKDPFMLNSVILVFANKQDMKG 108
+K F N I++ NK+D++
Sbjct: 104 EVKH-FCPNVPIILVGNKKDLRN 125
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 30.8 bits (68), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 11/82 (13%)
Query: 31 KVQYKNVIFTVWDVGGQE---KLRPLWRHYFNNTDGLI--YVVDSLDRERIGKAKQEFQA 85
+V K V +WD GQE +LRPL + +TD ++ + +DS D + +++
Sbjct: 50 EVDGKQVELALWDTAGQEDYDRLRPL---SYPDTDVILMCFSIDSPD--SLENIPEKWTP 104
Query: 86 IIKDPFMLNSVILVFANKQDMK 107
+K F N I++ NK+D++
Sbjct: 105 EVKH-FCPNVPIILVGNKKDLR 125
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 30.8 bits (68), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 11/83 (13%)
Query: 31 KVQYKNVIFTVWDVGGQE---KLRPLWRHYFNNTDGLI--YVVDSLDRERIGKAKQEFQA 85
+V K V +WD GQE +LRPL + +TD ++ + +DS D + +++
Sbjct: 47 EVDGKQVELALWDTAGQEDYDRLRPL---SYPDTDVILMCFSIDSPD--SLENIPEKWTP 101
Query: 86 IIKDPFMLNSVILVFANKQDMKG 108
+K F N I++ NK+D++
Sbjct: 102 EVKH-FCPNVPIILVGNKKDLRN 123
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 30.8 bits (68), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 11/83 (13%)
Query: 31 KVQYKNVIFTVWDVGGQE---KLRPLWRHYFNNTDGLI--YVVDSLDRERIGKAKQEFQA 85
+V K V +WD GQE +LRPL + +TD ++ + +DS D + +++
Sbjct: 45 EVDGKQVELALWDTAGQEDYDRLRPL---SYPDTDVILMCFSIDSPD--SLENIPEKWTP 99
Query: 86 IIKDPFMLNSVILVFANKQDMKG 108
+K F N I++ NK+D++
Sbjct: 100 EVKH-FCPNVPIILVGNKKDLRN 121
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 30.8 bits (68), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 11/83 (13%)
Query: 31 KVQYKNVIFTVWDVGGQE---KLRPLWRHYFNNTDGLI--YVVDSLDRERIGKAKQEFQA 85
+V K V +WD GQE +LRPL + +TD ++ + +DS D + +++
Sbjct: 48 EVDGKQVELALWDTAGQEDYDRLRPL---SYPDTDVILMCFSIDSPD--SLENIPEKWTP 102
Query: 86 IIKDPFMLNSVILVFANKQDMKG 108
+K F N I++ NK+D++
Sbjct: 103 EVKH-FCPNVPIILVGNKKDLRN 124
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 30.8 bits (68), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 11/83 (13%)
Query: 31 KVQYKNVIFTVWDVGGQE---KLRPLWRHYFNNTDGLI--YVVDSLDRERIGKAKQEFQA 85
+V K V +WD GQE +LRPL + +TD ++ + +DS D + +++
Sbjct: 45 EVDGKQVELALWDTAGQEDYDRLRPL---SYPDTDVILMCFSIDSPD--SLENIPEKWTP 99
Query: 86 IIKDPFMLNSVILVFANKQDMKG 108
+K F N I++ NK+D++
Sbjct: 100 EVKH-FCPNVPIILVGNKKDLRN 121
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 30.8 bits (68), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 11/82 (13%)
Query: 31 KVQYKNVIFTVWDVGGQE---KLRPLWRHYFNNTDGLI--YVVDSLDRERIGKAKQEFQA 85
+V K V +WD GQE +LRPL + +TD ++ + +DS D + +++
Sbjct: 47 EVDGKQVELALWDTAGQEDYDRLRPL---SYPDTDVILMCFSIDSPD--SLENIPEKWTP 101
Query: 86 IIKDPFMLNSVILVFANKQDMK 107
+K F N I++ NK+D++
Sbjct: 102 EVKH-FCPNVPIILVGNKKDLR 122
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 30.8 bits (68), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 11/83 (13%)
Query: 31 KVQYKNVIFTVWDVGGQE---KLRPLWRHYFNNTDGLI--YVVDSLDRERIGKAKQEFQA 85
+V K V +WD GQE +LRPL + +TD ++ + +DS D + +++
Sbjct: 48 EVDGKQVELALWDTAGQEDYDRLRPL---SYPDTDVILMCFSIDSPD--SLENIPEKWTP 102
Query: 86 IIKDPFMLNSVILVFANKQDMKG 108
+K F N I++ NK+D++
Sbjct: 103 EVKH-FCPNVPIILVGNKKDLRN 124
>pdb|3L2O|B Chain B, Structure-Based Mechanism Of Dimerization-Dependent
Ubiquitination By The Scffbx4 Ubiquitin Ligase
Length = 312
Score = 30.4 bits (67), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 9/104 (8%)
Query: 61 TDGLIYVVDSLDRERIGKAKQEFQAIIK--DPFMLNS----VILVFANKQDMKGAMTPME 114
DG IYV ++ +R + + EF I+ DP +S ++L ++ D+K M
Sbjct: 211 VDGFIYVANAEAHKR-HEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK-RMPCFY 268
Query: 115 VCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMRA 158
+ L L +L N W +Q T A G G++W+ ++ RA
Sbjct: 269 LAHELHL-NLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKRA 311
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 30.0 bits (66), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVD 69
K + +WD GQE+ R + Y+ G++ V D
Sbjct: 55 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYD 89
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 30.0 bits (66), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVD 69
K + +WD GQE+ R + Y+ G++ V D
Sbjct: 53 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYD 87
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 31 KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVD 69
+++ K + +WD GQE+ R + Y+ G + V D
Sbjct: 56 EIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYD 94
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 37 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR---ERIGKAKQEF--QAIIKDPF 91
V +WD GQE+ + L ++ D + V D + + + EF QA +DP
Sbjct: 57 VTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDP- 115
Query: 92 MLNSVILVFANKQDMKG 108
N +V NK D++
Sbjct: 116 -ENFPFVVLGNKIDLEN 131
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 11/83 (13%)
Query: 31 KVQYKNVIFTVWDVGGQE---KLRPLWRHYFNNTDGLI--YVVDSLDRERIGKAKQEFQA 85
+V K V +WD GQE + RPL + +TD ++ + +DS D + +++
Sbjct: 47 EVDGKQVELALWDTAGQEDYDRARPL---SYPDTDVILMCFSIDSPD--SLENIPEKWTP 101
Query: 86 IIKDPFMLNSVILVFANKQDMKG 108
+K F N I++ NK+D++
Sbjct: 102 EVKH-FCPNVPIILVGNKKDLRN 123
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 39 FTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVIL 98
F +WD GQE+ L Y+ + + V D ++ K+ + +K+ N V+
Sbjct: 74 FLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKE-LKEHGPENIVMA 132
Query: 99 VFANKQDM 106
+ NK D+
Sbjct: 133 IAGNKCDL 140
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 29/69 (42%)
Query: 38 IFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVI 97
I V D GQE+ + Y DG + V D+ + Q I++ + +
Sbjct: 67 ILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPM 126
Query: 98 LVFANKQDM 106
++ ANK D+
Sbjct: 127 ILVANKVDL 135
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 29/69 (42%)
Query: 38 IFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVI 97
I V D GQE+ + Y DG + V D+ + Q I++ + +
Sbjct: 67 ILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPM 126
Query: 98 LVFANKQDM 106
++ ANK D+
Sbjct: 127 ILVANKVDL 135
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 29/69 (42%)
Query: 38 IFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVI 97
I V D GQE+ + Y DG + V D+ + Q I++ + +
Sbjct: 67 ILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPM 126
Query: 98 LVFANKQDM 106
++ ANK D+
Sbjct: 127 ILVANKVDL 135
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVD 69
+ + +WD GQE+ R L Y ++ + V D
Sbjct: 53 RTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYD 87
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 37 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR 73
V +WD GQE+ R + Y+ + L+ + D ++
Sbjct: 60 VKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNK 96
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 37 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR---ERIGKAKQEF--QAIIKDPF 91
V +WD GQE+ + L ++ D + V D + + + EF QA +DP
Sbjct: 57 VTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDP- 115
Query: 92 MLNSVILVFANKQDMKG 108
N +V NK D++
Sbjct: 116 -ENFPFVVLGNKIDLEN 131
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 29/69 (42%)
Query: 38 IFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVI 97
I V D GQE+ + Y DG + V D+ + Q I++ + +
Sbjct: 62 ILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPM 121
Query: 98 LVFANKQDM 106
++ ANK D+
Sbjct: 122 ILVANKVDL 130
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
Query: 37 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR---ERIGKAKQEF--QAIIKDPF 91
V +WD GQE+ + L ++ D + V D + + + EF QA +DP
Sbjct: 57 VTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDP- 115
Query: 92 MLNSVILVFANKQDMKG 108
N +V NK D +
Sbjct: 116 -ENFPFVVLGNKIDFEN 131
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 41 VWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR---ERIGKAKQEF--QAIIKDPFMLNS 95
VWD GQE+ + L ++ D + V D + E I + EF A + P
Sbjct: 62 VWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPF 121
Query: 96 VIL 98
VIL
Sbjct: 122 VIL 124
>pdb|3JQO|A Chain A, Crystal Structure Of The Outer Membrane Complex Of A Type
Iv Secretion System
pdb|3JQO|D Chain D, Crystal Structure Of The Outer Membrane Complex Of A Type
Iv Secretion System
pdb|3JQO|G Chain G, Crystal Structure Of The Outer Membrane Complex Of A Type
Iv Secretion System
pdb|3JQO|J Chain J, Crystal Structure Of The Outer Membrane Complex Of A Type
Iv Secretion System
pdb|3JQO|M Chain M, Crystal Structure Of The Outer Membrane Complex Of A Type
Iv Secretion System
pdb|3JQO|P Chain P, Crystal Structure Of The Outer Membrane Complex Of A Type
Iv Secretion System
pdb|3JQO|S Chain S, Crystal Structure Of The Outer Membrane Complex Of A Type
Iv Secretion System
pdb|3JQO|V Chain V, Crystal Structure Of The Outer Membrane Complex Of A Type
Iv Secretion System
pdb|3JQO|Y Chain Y, Crystal Structure Of The Outer Membrane Complex Of A Type
Iv Secretion System
pdb|3JQO|BB Chain b, Crystal Structure Of The Outer Membrane Complex Of A Type
Iv Secretion System
pdb|3JQO|EE Chain e, Crystal Structure Of The Outer Membrane Complex Of A Type
Iv Secretion System
pdb|3JQO|HH Chain h, Crystal Structure Of The Outer Membrane Complex Of A Type
Iv Secretion System
pdb|3JQO|KK Chain k, Crystal Structure Of The Outer Membrane Complex Of A Type
Iv Secretion System
pdb|3JQO|NN Chain n, Crystal Structure Of The Outer Membrane Complex Of A Type
Iv Secretion System
Length = 227
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 46 GQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKA 79
GQ ++ LW N+ DG I +DS +G A
Sbjct: 101 GQARVFVLWERIRNDQDGTIVNIDSAGTNSLGSA 134
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 26.2 bits (56), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 36 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVD 69
NV +WD+GGQ + Y G++ V D
Sbjct: 55 NVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYD 88
>pdb|2C9H|A Chain A, Structure Of Mitochondrial Beta-Ketoacyl Synthase
Length = 444
Score = 26.2 bits (56), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Query: 100 FANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG-----LDWLASTLK 154
F +K D+K +P + G +K+ WH Q G+ G L+ ++ T
Sbjct: 91 FVSKSDIKSMSSPTIMAIGAAELAMKDSGWHPQSEADQVATGVAIGMGMIPLEVVSETAL 150
Query: 155 EMRAAGYSSV 164
+ GY+ V
Sbjct: 151 NFQTKGYNKV 160
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,692,026
Number of Sequences: 62578
Number of extensions: 179319
Number of successful extensions: 769
Number of sequences better than 100.0: 229
Number of HSP's better than 100.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 538
Number of HSP's gapped (non-prelim): 229
length of query: 169
length of database: 14,973,337
effective HSP length: 92
effective length of query: 77
effective length of database: 9,216,161
effective search space: 709644397
effective search space used: 709644397
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)