Query 030931
Match_columns 169
No_of_seqs 132 out of 1529
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 06:44:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030931.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030931hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 4.1E-38 8.9E-43 210.8 9.1 154 1-160 13-178 (205)
2 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 8.8E-37 1.9E-41 203.9 9.7 153 2-157 27-188 (221)
3 KOG0092 GTPase Rab5/YPT51 and 100.0 3.5E-36 7.5E-41 200.8 9.7 153 1-159 9-172 (200)
4 PLN00223 ADP-ribosylation fact 100.0 5.9E-35 1.3E-39 201.2 14.4 155 2-156 22-180 (181)
5 smart00177 ARF ARF-like small 100.0 2.1E-34 4.5E-39 197.6 14.2 152 2-153 18-173 (175)
6 cd04149 Arf6 Arf6 subfamily. 100.0 4.2E-34 9.1E-39 194.9 13.3 150 2-151 14-167 (168)
7 cd04150 Arf1_5_like Arf1-Arf5- 100.0 5.8E-34 1.3E-38 192.6 13.3 150 2-151 5-158 (159)
8 PTZ00133 ADP-ribosylation fact 100.0 1.5E-33 3.2E-38 194.4 14.5 156 2-157 22-181 (182)
9 KOG0078 GTP-binding protein SE 100.0 1.3E-34 2.7E-39 196.5 8.9 152 2-157 17-177 (207)
10 cd04120 Rab12 Rab12 subfamily. 100.0 4.1E-34 9E-39 199.6 10.7 151 1-156 4-165 (202)
11 KOG0070 GTP-binding ADP-ribosy 100.0 5.5E-33 1.2E-37 184.8 15.3 154 3-156 23-180 (181)
12 cd04158 ARD1 ARD1 subfamily. 100.0 7.7E-33 1.7E-37 188.8 14.9 157 1-157 3-164 (169)
13 KOG0098 GTPase Rab2, small G p 100.0 1.8E-34 3.9E-39 191.5 6.5 155 2-160 11-174 (216)
14 cd04121 Rab40 Rab40 subfamily. 100.0 1.1E-33 2.4E-38 195.8 10.0 150 1-157 10-170 (189)
15 PF00025 Arf: ADP-ribosylation 100.0 1.2E-32 2.7E-37 188.7 15.1 152 2-153 19-175 (175)
16 KOG0073 GTP-binding ADP-ribosy 100.0 1.4E-32 3.1E-37 178.8 13.6 155 2-156 21-180 (185)
17 KOG0394 Ras-related GTPase [Ge 100.0 3.4E-34 7.4E-39 189.8 5.6 156 1-157 13-181 (210)
18 cd04161 Arl2l1_Arl13_like Arl2 100.0 2E-32 4.4E-37 186.4 13.4 150 2-151 4-166 (167)
19 cd04133 Rop_like Rop subfamily 100.0 2E-33 4.3E-38 192.5 7.3 153 1-155 5-174 (176)
20 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 3.1E-32 6.7E-37 185.0 12.9 149 1-151 3-163 (164)
21 cd04157 Arl6 Arl6 subfamily. 100.0 4.7E-32 1E-36 183.4 13.8 150 2-151 4-161 (162)
22 cd04154 Arl2 Arl2 subfamily. 100.0 3.2E-32 7E-37 186.4 13.1 150 2-151 19-172 (173)
23 cd01875 RhoG RhoG subfamily. 100.0 4.3E-33 9.4E-38 193.5 8.4 155 1-157 7-180 (191)
24 KOG0075 GTP-binding ADP-ribosy 100.0 1.7E-31 3.6E-36 171.0 14.8 154 2-155 25-183 (186)
25 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 5.2E-33 1.1E-37 190.2 8.2 151 2-157 7-167 (172)
26 KOG0079 GTP-binding protein H- 100.0 3.1E-33 6.8E-38 179.2 6.3 151 2-157 13-172 (198)
27 smart00176 RAN Ran (Ras-relate 100.0 6.3E-32 1.4E-36 188.4 12.9 146 3-156 1-156 (200)
28 KOG0093 GTPase Rab3, small G p 100.0 1.7E-32 3.7E-37 175.6 9.1 150 2-160 26-189 (193)
29 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 1.2E-32 2.6E-37 195.4 9.3 158 1-160 17-194 (232)
30 KOG0080 GTPase Rab18, small G 100.0 4.4E-33 9.4E-38 180.8 5.8 153 2-157 16-177 (209)
31 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 1.2E-31 2.7E-36 183.7 13.4 150 2-151 20-173 (174)
32 cd04151 Arl1 Arl1 subfamily. 100.0 2.2E-31 4.7E-36 179.7 13.9 150 2-151 4-157 (158)
33 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 1.1E-32 2.5E-37 189.8 7.7 152 1-154 9-180 (182)
34 KOG0071 GTP-binding ADP-ribosy 100.0 2.8E-31 6E-36 168.7 12.8 152 3-154 23-178 (180)
35 KOG0086 GTPase Rab4, small G p 100.0 6.2E-32 1.3E-36 174.2 9.8 161 2-166 14-183 (214)
36 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 3.4E-31 7.4E-36 185.4 13.9 153 1-158 4-172 (201)
37 cd04126 Rab20 Rab20 subfamily. 100.0 6.8E-32 1.5E-36 190.5 10.0 155 1-156 4-192 (220)
38 KOG0087 GTPase Rab11/YPT3, sma 100.0 3.5E-32 7.5E-37 184.1 7.8 153 1-157 18-179 (222)
39 PLN03071 GTP-binding nuclear p 100.0 2.1E-31 4.4E-36 188.6 12.0 148 1-156 17-174 (219)
40 cd04128 Spg1 Spg1p. Spg1p (se 100.0 1.9E-31 4.1E-36 183.9 10.7 154 1-157 4-169 (182)
41 cd00877 Ran Ran (Ras-related n 100.0 4.8E-31 1.1E-35 179.5 12.5 148 2-156 5-161 (166)
42 KOG0083 GTPase Rab26/Rab37, sm 100.0 1.7E-32 3.8E-37 173.1 4.8 148 1-157 1-163 (192)
43 cd04131 Rnd Rnd subfamily. Th 100.0 5.3E-32 1.1E-36 186.0 7.2 152 1-154 5-176 (178)
44 cd04122 Rab14 Rab14 subfamily. 100.0 1.8E-31 4E-36 181.4 9.6 148 2-155 7-165 (166)
45 cd04160 Arfrp1 Arfrp1 subfamil 100.0 1.1E-30 2.5E-35 177.5 13.2 150 2-151 4-166 (167)
46 cd04127 Rab27A Rab27a subfamil 100.0 1.6E-31 3.5E-36 183.8 9.1 151 1-156 8-179 (180)
47 cd04144 Ras2 Ras2 subfamily. 100.0 1.3E-31 2.8E-36 186.0 8.6 158 1-163 3-172 (190)
48 cd04156 ARLTS1 ARLTS1 subfamil 100.0 1.2E-30 2.6E-35 176.2 13.1 151 1-151 3-159 (160)
49 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 2.6E-31 5.6E-36 181.4 9.8 154 1-155 4-166 (170)
50 KOG0095 GTPase Rab30, small G 100.0 7.3E-32 1.6E-36 173.3 6.4 152 1-156 11-171 (213)
51 cd01874 Cdc42 Cdc42 subfamily. 100.0 2.3E-31 5E-36 182.5 9.2 148 1-153 5-174 (175)
52 PTZ00369 Ras-like protein; Pro 100.0 1.8E-31 3.9E-36 185.1 8.8 152 1-157 9-170 (189)
53 smart00178 SAR Sar1p-like memb 100.0 1.8E-30 3.9E-35 179.4 13.2 151 2-152 22-183 (184)
54 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 3.1E-30 6.7E-35 178.1 14.2 156 2-157 8-173 (183)
55 cd00878 Arf_Arl Arf (ADP-ribos 100.0 3E-30 6.5E-35 174.0 13.4 150 2-151 4-157 (158)
56 cd04136 Rap_like Rap-like subf 100.0 3.2E-31 7E-36 179.4 8.3 148 1-153 5-162 (163)
57 cd04134 Rho3 Rho3 subfamily. 100.0 2.4E-31 5.3E-36 184.5 7.8 155 1-157 4-177 (189)
58 cd04175 Rap1 Rap1 subgroup. T 100.0 4.3E-31 9.4E-36 179.2 8.3 148 2-154 6-163 (164)
59 cd00879 Sar1 Sar1 subfamily. 100.0 4.2E-30 9.1E-35 178.3 13.4 151 2-152 24-189 (190)
60 cd04117 Rab15 Rab15 subfamily. 100.0 6.3E-31 1.4E-35 178.0 9.0 147 1-152 4-160 (161)
61 cd01865 Rab3 Rab3 subfamily. 100.0 1.2E-30 2.6E-35 177.3 9.6 149 1-155 5-164 (165)
62 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 8.8E-31 1.9E-35 185.0 8.9 156 1-158 5-180 (222)
63 cd04111 Rab39 Rab39 subfamily. 100.0 2.5E-30 5.5E-35 182.1 11.2 155 1-160 6-172 (211)
64 KOG0081 GTPase Rab27, small G 100.0 1.5E-30 3.3E-35 168.8 8.7 152 3-157 15-184 (219)
65 cd04109 Rab28 Rab28 subfamily. 100.0 2.6E-30 5.6E-35 182.7 10.8 152 1-157 4-169 (215)
66 cd04110 Rab35 Rab35 subfamily. 100.0 3E-30 6.4E-35 180.4 10.6 151 1-158 10-171 (199)
67 cd04138 H_N_K_Ras_like H-Ras/N 100.0 5.2E-30 1.1E-34 173.1 11.0 148 1-153 5-161 (162)
68 cd01867 Rab8_Rab10_Rab13_like 100.0 2.8E-30 6E-35 175.8 9.3 149 1-155 7-166 (167)
69 cd04176 Rap2 Rap2 subgroup. T 100.0 1.3E-30 2.9E-35 176.6 7.4 148 1-153 5-162 (163)
70 cd04119 RJL RJL (RabJ-Like) su 100.0 1.4E-29 3E-34 172.0 12.3 148 2-154 5-167 (168)
71 cd04159 Arl10_like Arl10-like 100.0 3.3E-29 7.1E-34 168.3 13.8 150 2-151 4-158 (159)
72 cd01871 Rac1_like Rac1-like su 100.0 1.7E-30 3.6E-35 178.0 7.4 150 1-152 5-173 (174)
73 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 4.4E-30 9.5E-35 174.6 9.4 149 1-155 6-165 (166)
74 smart00173 RAS Ras subfamily o 100.0 3.8E-30 8.1E-35 174.5 8.8 150 1-155 4-163 (164)
75 cd04155 Arl3 Arl3 subfamily. 100.0 2.6E-29 5.7E-34 171.8 12.9 150 2-151 19-172 (173)
76 cd04143 Rhes_like Rhes_like su 100.0 1.9E-29 4.2E-34 181.1 12.4 153 2-158 5-175 (247)
77 cd01873 RhoBTB RhoBTB subfamil 100.0 2.3E-30 5.1E-35 180.0 6.7 148 1-152 6-194 (195)
78 cd04145 M_R_Ras_like M-Ras/R-R 100.0 5.7E-30 1.2E-34 173.5 8.0 148 1-153 6-163 (164)
79 cd04140 ARHI_like ARHI subfami 100.0 9E-30 1.9E-34 173.0 8.5 145 2-151 6-162 (165)
80 cd04124 RabL2 RabL2 subfamily. 100.0 6E-29 1.3E-33 168.4 12.4 148 1-156 4-160 (161)
81 cd04125 RabA_like RabA-like su 100.0 2.3E-29 5E-34 174.4 10.6 151 1-157 4-165 (188)
82 smart00174 RHO Rho (Ras homolo 100.0 1.7E-29 3.7E-34 172.9 9.3 153 1-155 2-173 (174)
83 cd04103 Centaurin_gamma Centau 100.0 1.4E-29 3.1E-34 170.8 8.8 145 2-152 5-157 (158)
84 PLN03110 Rab GTPase; Provision 100.0 2.4E-29 5.2E-34 177.8 10.2 152 1-157 16-177 (216)
85 cd04112 Rab26 Rab26 subfamily. 100.0 2.2E-29 4.8E-34 174.9 9.4 151 2-158 5-167 (191)
86 cd04116 Rab9 Rab9 subfamily. 100.0 8E-29 1.7E-33 169.0 12.1 147 2-152 10-169 (170)
87 PF00071 Ras: Ras family; Int 100.0 3.1E-29 6.6E-34 169.7 9.8 148 1-154 3-161 (162)
88 cd01866 Rab2 Rab2 subfamily. 100.0 3.1E-29 6.7E-34 170.8 9.4 149 1-155 8-167 (168)
89 cd04106 Rab23_lke Rab23-like s 100.0 2.3E-29 5E-34 170.2 8.4 143 2-151 5-160 (162)
90 cd04132 Rho4_like Rho4-like su 100.0 5.5E-29 1.2E-33 172.3 10.3 151 1-158 4-171 (187)
91 KOG0088 GTPase Rab21, small G 100.0 8.2E-31 1.8E-35 170.0 1.0 152 2-159 18-180 (218)
92 cd04115 Rab33B_Rab33A Rab33B/R 100.0 3.2E-29 6.9E-34 171.1 8.6 148 2-153 7-168 (170)
93 cd04101 RabL4 RabL4 (Rab-like4 100.0 5.1E-29 1.1E-33 168.9 9.3 147 1-153 4-163 (164)
94 cd01868 Rab11_like Rab11-like. 100.0 5E-29 1.1E-33 169.2 9.1 146 2-153 8-164 (165)
95 cd04118 Rab24 Rab24 subfamily. 100.0 1.3E-28 2.9E-33 171.2 11.0 150 1-157 4-169 (193)
96 cd04113 Rab4 Rab4 subfamily. 100.0 5.4E-29 1.2E-33 168.4 8.5 146 1-152 4-160 (161)
97 cd01864 Rab19 Rab19 subfamily. 100.0 4E-28 8.6E-33 164.8 11.5 146 2-152 8-164 (165)
98 KOG0072 GTP-binding ADP-ribosy 100.0 3.8E-28 8.2E-33 155.1 10.3 154 3-156 24-181 (182)
99 smart00175 RAB Rab subfamily o 100.0 1.7E-28 3.7E-33 166.2 9.3 149 1-155 4-163 (164)
100 cd04177 RSR1 RSR1 subgroup. R 100.0 1.1E-28 2.4E-33 168.1 8.0 150 2-155 6-165 (168)
101 PLN03118 Rab family protein; P 100.0 3.8E-28 8.3E-33 171.2 10.7 152 1-157 18-180 (211)
102 KOG0097 GTPase Rab14, small G 100.0 8.8E-29 1.9E-33 158.0 6.7 154 1-159 15-178 (215)
103 cd01892 Miro2 Miro2 subfamily. 100.0 1.4E-27 3E-32 162.9 13.0 144 2-155 9-167 (169)
104 cd01861 Rab6 Rab6 subfamily. 100.0 6.6E-28 1.4E-32 162.9 11.2 145 2-152 5-160 (161)
105 PTZ00099 rab6; Provisional 100.0 6.2E-28 1.3E-32 165.3 11.1 137 16-158 4-146 (176)
106 PLN03108 Rab family protein; P 100.0 3.5E-28 7.6E-33 171.2 9.8 151 1-157 10-171 (210)
107 KOG0091 GTPase Rab39, small G 100.0 5.4E-29 1.2E-33 162.2 4.9 155 2-159 13-178 (213)
108 cd01863 Rab18 Rab18 subfamily. 100.0 9E-28 2E-32 162.3 11.2 147 1-152 4-160 (161)
109 cd01862 Rab7 Rab7 subfamily. 100.0 2.1E-27 4.6E-32 162.0 12.9 153 1-157 4-170 (172)
110 cd04142 RRP22 RRP22 subfamily. 100.0 1.3E-27 2.9E-32 166.7 12.0 152 2-157 5-177 (198)
111 cd04130 Wrch_1 Wrch-1 subfamil 100.0 1.8E-28 3.8E-33 167.8 7.3 149 1-151 4-171 (173)
112 cd01860 Rab5_related Rab5-rela 100.0 2.4E-27 5.1E-32 160.5 12.4 147 1-153 5-162 (163)
113 cd04146 RERG_RasL11_like RERG/ 99.9 3.4E-28 7.4E-33 165.1 6.9 148 2-154 4-164 (165)
114 cd04139 RalA_RalB RalA/RalB su 99.9 4.2E-27 9E-32 159.2 11.9 150 1-155 4-163 (164)
115 cd04148 RGK RGK subfamily. Th 99.9 1.7E-27 3.7E-32 168.8 9.6 150 1-157 4-166 (221)
116 KOG0395 Ras-related GTPase [Ge 99.9 6.8E-27 1.5E-31 162.1 11.8 151 2-157 8-168 (196)
117 cd04135 Tc10 TC10 subfamily. 99.9 1.1E-27 2.4E-32 163.9 7.5 151 1-153 4-173 (174)
118 cd04147 Ras_dva Ras-dva subfam 99.9 5.6E-27 1.2E-31 163.7 11.1 151 1-155 3-164 (198)
119 cd01870 RhoA_like RhoA-like su 99.9 6.6E-27 1.4E-31 160.1 10.6 151 1-153 5-174 (175)
120 cd04123 Rab21 Rab21 subfamily. 99.9 6E-27 1.3E-31 158.1 8.9 146 2-153 5-161 (162)
121 PTZ00132 GTP-binding nuclear p 99.9 2.9E-26 6.3E-31 162.0 12.6 149 2-157 14-171 (215)
122 cd04137 RheB Rheb (Ras Homolog 99.9 4.3E-26 9.4E-31 156.9 12.1 154 1-159 5-168 (180)
123 cd04114 Rab30 Rab30 subfamily. 99.9 1.9E-26 4.2E-31 157.0 9.7 147 2-153 12-168 (169)
124 KOG0076 GTP-binding ADP-ribosy 99.9 5.3E-27 1.1E-31 154.3 6.6 156 1-156 21-189 (197)
125 cd00154 Rab Rab family. Rab G 99.9 5.3E-26 1.1E-30 152.6 11.4 144 1-150 4-158 (159)
126 cd01893 Miro1 Miro1 subfamily. 99.9 2E-26 4.2E-31 156.7 9.4 152 1-155 4-165 (166)
127 cd00157 Rho Rho (Ras homology) 99.9 4.1E-26 9E-31 155.5 7.7 149 1-151 4-170 (171)
128 cd04129 Rho2 Rho2 subfamily. 99.9 3.7E-26 8E-31 158.2 7.4 156 1-158 5-177 (187)
129 cd00876 Ras Ras family. The R 99.9 5.4E-26 1.2E-30 153.1 8.0 147 1-152 3-159 (160)
130 KOG0074 GTP-binding ADP-ribosy 99.9 6E-26 1.3E-30 144.7 7.3 152 2-153 22-178 (185)
131 KOG0393 Ras-related small GTPa 99.9 2.7E-25 5.9E-30 151.5 10.8 148 2-158 9-183 (198)
132 cd04102 RabL3 RabL3 (Rab-like3 99.9 2.1E-25 4.5E-30 155.6 9.9 140 1-141 4-177 (202)
133 cd01897 NOG NOG1 is a nucleola 99.9 8.2E-25 1.8E-29 148.8 10.4 146 1-153 4-167 (168)
134 cd04171 SelB SelB subfamily. 99.9 1.9E-24 4.1E-29 146.2 9.3 141 2-151 5-163 (164)
135 cd01890 LepA LepA subfamily. 99.9 3.1E-24 6.7E-29 147.4 10.5 142 2-153 5-176 (179)
136 cd01898 Obg Obg subfamily. Th 99.9 2.3E-24 4.9E-29 146.8 9.4 148 2-152 5-169 (170)
137 PRK12299 obgE GTPase CgtA; Rev 99.9 2.6E-23 5.6E-28 154.9 10.9 152 2-157 163-331 (335)
138 cd01881 Obg_like The Obg-like 99.9 2.3E-23 5.1E-28 142.4 9.0 148 2-152 1-175 (176)
139 cd01879 FeoB Ferrous iron tran 99.9 5.4E-23 1.2E-27 138.3 10.2 141 2-153 1-156 (158)
140 PLN00023 GTP-binding protein; 99.9 3.8E-23 8.3E-28 151.3 9.6 107 2-108 26-165 (334)
141 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 9.5E-23 2.1E-27 138.5 10.9 147 2-154 5-166 (168)
142 cd01878 HflX HflX subfamily. 99.9 6.2E-23 1.3E-27 143.9 9.3 142 2-153 46-204 (204)
143 KOG4252 GTP-binding protein [S 99.9 1.4E-25 3.1E-30 148.5 -3.9 148 2-156 25-183 (246)
144 TIGR02729 Obg_CgtA Obg family 99.9 1.7E-22 3.7E-27 150.3 11.0 148 2-153 162-328 (329)
145 KOG0096 GTPase Ran/TC4/GSP1 (n 99.9 7.1E-23 1.5E-27 136.7 7.7 150 2-158 15-173 (216)
146 TIGR02528 EutP ethanolamine ut 99.9 2.8E-23 6E-28 137.7 5.0 127 2-150 5-141 (142)
147 cd00882 Ras_like_GTPase Ras-li 99.9 1.6E-22 3.6E-27 134.1 8.7 146 2-150 1-156 (157)
148 cd01894 EngA1 EngA1 subfamily. 99.9 8.2E-22 1.8E-26 132.3 11.8 140 1-152 1-156 (157)
149 PRK03003 GTP-binding protein D 99.9 4.6E-22 1E-26 155.0 11.1 142 2-155 43-200 (472)
150 TIGR00231 small_GTP small GTP- 99.9 1.1E-21 2.4E-26 131.2 11.3 144 2-150 6-160 (161)
151 cd01891 TypA_BipA TypA (tyrosi 99.9 5.1E-22 1.1E-26 138.3 8.9 150 2-156 7-190 (194)
152 cd00881 GTP_translation_factor 99.9 2.8E-21 6.1E-26 133.5 11.7 148 2-154 4-187 (189)
153 PRK15494 era GTPase Era; Provi 99.9 2.2E-21 4.8E-26 145.2 11.5 146 2-157 57-219 (339)
154 TIGR03156 GTP_HflX GTP-binding 99.9 1.8E-21 3.9E-26 146.0 10.5 140 2-152 194-350 (351)
155 PRK03003 GTP-binding protein D 99.9 1.9E-21 4.1E-26 151.6 10.9 150 2-156 216-384 (472)
156 COG1100 GTPase SAR1 and relate 99.9 1.8E-21 4E-26 137.7 9.7 154 2-157 10-188 (219)
157 cd01889 SelB_euk SelB subfamil 99.9 1.6E-21 3.5E-26 135.5 9.2 150 2-156 5-188 (192)
158 PRK04213 GTP-binding protein; 99.9 1.5E-21 3.3E-26 136.5 8.8 149 2-157 14-195 (201)
159 cd04164 trmE TrmE (MnmE, ThdF, 99.9 8.7E-21 1.9E-25 127.2 11.5 135 2-153 6-156 (157)
160 PRK05291 trmE tRNA modificatio 99.9 4.8E-21 1E-25 148.2 11.1 136 2-155 220-371 (449)
161 cd04105 SR_beta Signal recogni 99.9 4.9E-21 1.1E-25 134.1 10.2 150 2-151 5-202 (203)
162 TIGR00450 mnmE_trmE_thdF tRNA 99.9 1.7E-20 3.6E-25 144.6 14.0 140 2-157 208-363 (442)
163 TIGR00436 era GTP-binding prot 99.9 7.2E-21 1.6E-25 138.7 10.6 146 2-157 5-167 (270)
164 TIGR03594 GTPase_EngA ribosome 99.8 1E-20 2.2E-25 146.3 11.9 149 2-155 177-345 (429)
165 PRK12296 obgE GTPase CgtA; Rev 99.8 9.2E-21 2E-25 146.5 10.5 151 2-157 164-343 (500)
166 cd00880 Era_like Era (E. coli 99.8 3.4E-20 7.5E-25 124.1 11.1 146 2-152 1-162 (163)
167 TIGR01393 lepA GTP-binding pro 99.8 2.3E-20 5E-25 148.3 11.9 146 2-157 8-183 (595)
168 PRK12297 obgE GTPase CgtA; Rev 99.8 7E-20 1.5E-24 139.9 13.5 148 2-157 163-330 (424)
169 PRK11058 GTPase HflX; Provisio 99.8 5.1E-20 1.1E-24 141.2 12.3 143 2-156 202-364 (426)
170 COG2229 Predicted GTPase [Gene 99.8 1.1E-19 2.4E-24 121.3 11.2 144 2-152 15-176 (187)
171 cd01895 EngA2 EngA2 subfamily. 99.8 1.5E-19 3.3E-24 123.0 11.7 146 2-152 7-173 (174)
172 TIGR00487 IF-2 translation ini 99.8 9.1E-20 2E-24 144.4 12.1 145 2-152 92-248 (587)
173 KOG1673 Ras GTPases [General f 99.8 2.5E-20 5.5E-25 120.9 7.0 153 2-156 25-188 (205)
174 PRK15467 ethanolamine utilizat 99.8 3.6E-20 7.8E-25 125.0 7.9 141 1-156 5-149 (158)
175 TIGR00437 feoB ferrous iron tr 99.8 6.6E-20 1.4E-24 145.7 10.5 135 4-153 1-154 (591)
176 PRK00093 GTP-binding protein D 99.8 1.5E-19 3.3E-24 139.9 12.2 137 2-153 6-161 (435)
177 PF08477 Miro: Miro-like prote 99.8 5.2E-21 1.1E-25 123.1 3.0 102 2-105 4-119 (119)
178 TIGR03594 GTPase_EngA ribosome 99.8 2E-19 4.4E-24 139.1 11.8 141 2-156 4-162 (429)
179 PRK05306 infB translation init 99.8 2.1E-19 4.6E-24 145.6 11.9 142 2-152 295-450 (787)
180 KOG3883 Ras family small GTPas 99.8 1.5E-19 3.2E-24 117.1 8.5 154 4-160 16-181 (198)
181 cd01888 eIF2_gamma eIF2-gamma 99.8 5.1E-20 1.1E-24 129.1 6.9 114 37-155 83-200 (203)
182 TIGR00475 selB selenocysteine- 99.8 1.3E-19 2.9E-24 143.9 9.6 147 2-157 5-169 (581)
183 PF02421 FeoB_N: Ferrous iron 99.8 1.3E-19 2.8E-24 120.7 8.0 133 2-149 5-156 (156)
184 PRK09518 bifunctional cytidyla 99.8 3.8E-19 8.1E-24 144.6 10.8 149 2-155 455-622 (712)
185 PRK00093 GTP-binding protein D 99.8 1E-18 2.2E-23 135.4 12.7 149 2-155 178-345 (435)
186 PRK05433 GTP-binding protein L 99.8 5E-19 1.1E-23 140.9 11.2 146 2-157 12-187 (600)
187 cd04163 Era Era subfamily. Er 99.8 7.5E-19 1.6E-23 118.6 10.0 143 2-152 8-167 (168)
188 PRK12298 obgE GTPase CgtA; Rev 99.8 8.9E-19 1.9E-23 133.0 11.0 154 2-157 164-336 (390)
189 CHL00189 infB translation init 99.8 5.2E-19 1.1E-23 142.4 10.1 146 2-153 249-409 (742)
190 PRK09518 bifunctional cytidyla 99.8 1.1E-18 2.3E-23 142.0 12.0 142 2-155 280-437 (712)
191 cd01896 DRG The developmentall 99.8 1.3E-18 2.9E-23 124.2 10.7 142 2-153 5-225 (233)
192 PRK00089 era GTPase Era; Revie 99.8 1.5E-18 3.3E-23 127.9 10.9 148 2-157 10-174 (292)
193 cd04168 TetM_like Tet(M)-like 99.8 2.4E-18 5.3E-23 123.0 11.3 148 2-154 4-235 (237)
194 PF00009 GTP_EFTU: Elongation 99.8 1.1E-18 2.4E-23 120.9 9.2 148 2-154 8-187 (188)
195 PRK10218 GTP-binding protein; 99.8 4.2E-18 9.1E-23 135.3 11.9 151 2-157 10-198 (607)
196 PRK00454 engB GTP-binding prot 99.8 1.3E-18 2.7E-23 121.2 7.5 147 2-155 29-195 (196)
197 TIGR01394 TypA_BipA GTP-bindin 99.8 2.2E-18 4.7E-23 136.9 9.7 151 2-157 6-194 (594)
198 TIGR00491 aIF-2 translation in 99.8 3.4E-18 7.3E-23 135.4 10.3 145 2-154 9-216 (590)
199 KOG0077 Vesicle coat complex C 99.7 5.6E-19 1.2E-23 115.8 3.2 149 4-152 27-191 (193)
200 PRK09554 feoB ferrous iron tra 99.7 9.8E-18 2.1E-22 136.5 11.0 142 2-154 8-168 (772)
201 TIGR00483 EF-1_alpha translati 99.7 2.8E-18 6E-23 132.5 7.2 143 2-146 12-199 (426)
202 COG1160 Predicted GTPases [Gen 99.7 4.4E-18 9.6E-23 128.2 7.6 141 2-154 8-165 (444)
203 PRK12317 elongation factor 1-a 99.7 6.7E-18 1.4E-22 130.4 8.7 143 2-146 11-197 (425)
204 KOG4423 GTP-binding protein-li 99.7 1.1E-19 2.3E-24 121.3 -2.6 150 3-157 31-197 (229)
205 KOG0090 Signal recognition par 99.7 2.5E-16 5.5E-21 107.6 13.0 148 4-152 45-237 (238)
206 TIGR03598 GTPase_YsxC ribosome 99.7 5.8E-18 1.2E-22 116.4 5.1 133 2-143 23-179 (179)
207 PRK04004 translation initiatio 99.7 7.8E-17 1.7E-21 128.1 11.9 144 2-153 11-217 (586)
208 TIGR03680 eif2g_arch translati 99.7 2E-17 4.3E-22 126.9 8.0 115 36-155 79-197 (406)
209 cd01876 YihA_EngB The YihA (En 99.7 3.3E-17 7.2E-22 110.8 7.9 143 2-152 4-169 (170)
210 PRK10512 selenocysteinyl-tRNA- 99.7 6.4E-17 1.4E-21 129.2 9.3 146 3-155 6-167 (614)
211 COG1159 Era GTPase [General fu 99.7 6.4E-17 1.4E-21 116.1 8.1 148 2-157 11-175 (298)
212 PRK13351 elongation factor G; 99.7 1.5E-16 3.3E-21 129.3 10.9 103 2-109 13-140 (687)
213 cd01883 EF1_alpha Eukaryotic e 99.7 3.8E-17 8.2E-22 115.8 6.5 115 27-144 67-195 (219)
214 cd04166 CysN_ATPS CysN_ATPS su 99.7 6.3E-17 1.4E-21 113.8 7.4 139 2-144 4-184 (208)
215 PRK04000 translation initiatio 99.7 8.5E-17 1.9E-21 123.4 8.4 115 37-156 85-203 (411)
216 KOG0462 Elongation factor-type 99.7 3.3E-16 7.2E-21 119.9 10.2 149 8-163 71-244 (650)
217 COG0486 ThdF Predicted GTPase 99.7 1.1E-15 2.3E-20 115.7 11.8 141 2-156 222-378 (454)
218 cd04170 EF-G_bact Elongation f 99.7 6.8E-16 1.5E-20 112.5 10.0 102 2-108 4-130 (268)
219 COG0481 LepA Membrane GTPase L 99.7 1E-15 2.2E-20 115.7 10.7 146 8-163 20-195 (603)
220 PRK00741 prfC peptide chain re 99.6 9.1E-16 2E-20 120.6 9.9 103 2-109 15-146 (526)
221 cd01884 EF_Tu EF-Tu subfamily. 99.6 1.9E-15 4.1E-20 105.1 9.9 137 2-143 7-172 (195)
222 cd04165 GTPBP1_like GTPBP1-lik 99.6 9.7E-16 2.1E-20 108.7 8.5 113 34-151 81-220 (224)
223 cd01886 EF-G Elongation factor 99.6 3.6E-15 7.9E-20 108.5 11.6 102 2-108 4-130 (270)
224 COG1160 Predicted GTPases [Gen 99.6 3.1E-15 6.7E-20 113.0 10.6 149 2-155 183-352 (444)
225 COG0532 InfB Translation initi 99.6 2.2E-15 4.8E-20 115.5 9.8 140 7-155 15-171 (509)
226 cd04167 Snu114p Snu114p subfam 99.6 2.7E-15 5.9E-20 105.9 9.1 101 2-107 5-136 (213)
227 KOG1707 Predicted Ras related/ 99.6 3.5E-16 7.5E-21 120.5 4.3 155 2-160 14-181 (625)
228 cd01885 EF2 EF2 (for archaea a 99.6 7.3E-15 1.6E-19 103.9 10.7 67 36-107 72-138 (222)
229 PF09439 SRPRB: Signal recogni 99.6 4E-16 8.7E-21 106.2 3.6 118 2-119 8-137 (181)
230 PF10662 PduV-EutP: Ethanolami 99.6 1.3E-15 2.8E-20 99.5 5.9 132 1-150 5-142 (143)
231 smart00275 G_alpha G protein a 99.6 2.2E-14 4.7E-19 107.6 12.7 138 20-157 167-337 (342)
232 PRK12736 elongation factor Tu; 99.6 7.1E-15 1.5E-19 112.5 10.0 148 2-154 17-201 (394)
233 cd04169 RF3 RF3 subfamily. Pe 99.6 1.3E-14 2.8E-19 105.5 10.7 114 2-120 7-152 (267)
234 cd00066 G-alpha G protein alph 99.6 1.9E-14 4.1E-19 107.1 11.2 138 20-157 144-314 (317)
235 PRK12740 elongation factor G; 99.6 1.9E-14 4.2E-19 116.8 12.1 100 4-108 2-126 (668)
236 COG0370 FeoB Fe2+ transport sy 99.6 1.5E-14 3.2E-19 113.9 10.9 141 2-157 8-167 (653)
237 TIGR00484 EF-G translation elo 99.6 2.7E-14 5.7E-19 116.2 12.4 102 2-108 15-141 (689)
238 PRK12735 elongation factor Tu; 99.6 1.3E-14 2.8E-19 111.1 10.0 148 2-154 17-203 (396)
239 KOG1145 Mitochondrial translat 99.6 1.4E-14 3.1E-19 111.1 9.6 139 7-154 163-316 (683)
240 TIGR00503 prfC peptide chain r 99.6 1.5E-14 3.2E-19 113.9 10.0 102 2-108 16-146 (527)
241 TIGR00485 EF-Tu translation el 99.6 1.7E-14 3.7E-19 110.4 9.8 134 2-140 17-179 (394)
242 KOG1489 Predicted GTP-binding 99.6 2.1E-14 4.5E-19 103.8 9.4 143 2-151 201-364 (366)
243 PRK14845 translation initiatio 99.6 7.9E-14 1.7E-18 116.0 12.9 138 9-154 473-673 (1049)
244 cd01899 Ygr210 Ygr210 subfamil 99.5 4.6E-14 9.9E-19 104.7 10.1 58 94-157 214-272 (318)
245 COG2262 HflX GTPases [General 99.5 8.9E-14 1.9E-18 103.8 10.5 143 4-156 199-358 (411)
246 COG1217 TypA Predicted membran 99.5 2.6E-14 5.7E-19 107.9 7.7 132 24-160 55-201 (603)
247 PF04670 Gtr1_RagA: Gtr1/RagA 99.5 5.1E-15 1.1E-19 104.9 3.6 151 2-157 4-179 (232)
248 CHL00071 tufA elongation facto 99.5 5.8E-14 1.3E-18 107.9 9.6 136 2-142 17-181 (409)
249 TIGR00157 ribosome small subun 99.5 1.3E-14 2.8E-19 104.3 5.2 110 48-168 24-135 (245)
250 TIGR02034 CysN sulfate adenyly 99.5 7.4E-14 1.6E-18 107.3 9.2 116 25-144 68-187 (406)
251 PTZ00141 elongation factor 1- 99.5 9.8E-14 2.1E-18 107.5 9.1 118 23-144 71-203 (446)
252 PLN00043 elongation factor 1-a 99.5 1.4E-13 3E-18 106.6 9.8 116 24-144 72-203 (447)
253 PRK00049 elongation factor Tu; 99.5 1.8E-13 3.9E-18 104.8 10.3 147 2-153 17-202 (396)
254 PRK12739 elongation factor G; 99.5 1.8E-13 3.8E-18 111.5 9.6 102 2-108 13-139 (691)
255 cd04104 p47_IIGP_like p47 (47- 99.5 8.4E-14 1.8E-18 97.2 6.5 148 2-157 6-187 (197)
256 PRK05124 cysN sulfate adenylyl 99.5 8.4E-14 1.8E-18 108.7 6.8 117 25-145 95-216 (474)
257 COG1084 Predicted GTPase [Gene 99.5 4.2E-13 9E-18 97.6 9.5 146 4-156 175-338 (346)
258 PLN03126 Elongation factor Tu; 99.5 4.7E-13 1E-17 104.3 10.5 135 2-141 86-249 (478)
259 PLN03127 Elongation factor Tu; 99.5 6.7E-13 1.5E-17 102.8 10.6 148 2-154 66-252 (447)
260 PRK00007 elongation factor G; 99.5 6.7E-13 1.4E-17 108.1 10.7 102 2-108 15-141 (693)
261 COG0218 Predicted GTPase [Gene 99.4 8.1E-13 1.8E-17 90.3 9.2 143 3-155 30-198 (200)
262 KOG1423 Ras-like GTPase ERA [C 99.4 1.1E-12 2.3E-17 94.6 10.1 149 2-156 77-273 (379)
263 PRK05506 bifunctional sulfate 99.4 4.5E-13 9.7E-18 108.2 6.9 112 29-144 96-211 (632)
264 COG0536 Obg Predicted GTPase [ 99.4 1.2E-12 2.5E-17 95.8 8.2 152 2-157 164-336 (369)
265 KOG1191 Mitochondrial GTPase [ 99.4 2.7E-12 5.9E-17 97.7 10.4 164 2-165 273-461 (531)
266 PF01926 MMR_HSR1: 50S ribosom 99.4 1.5E-12 3.3E-17 83.2 7.5 96 2-103 4-116 (116)
267 COG1163 DRG Predicted GTPase [ 99.4 4.8E-12 1E-16 92.0 9.4 142 4-155 70-290 (365)
268 cd01852 AIG1 AIG1 (avrRpt2-ind 99.3 3.7E-12 8.1E-17 88.8 7.5 154 2-157 5-187 (196)
269 KOG1490 GTP-binding protein CR 99.3 1.1E-12 2.5E-17 99.9 4.0 152 4-157 175-344 (620)
270 PRK09602 translation-associate 99.3 1.8E-11 3.9E-16 93.5 10.0 56 94-156 217-273 (396)
271 KOG0082 G-protein alpha subuni 99.3 4.1E-11 9E-16 89.0 10.5 137 21-157 179-347 (354)
272 COG5256 TEF1 Translation elong 99.3 9.2E-12 2E-16 93.2 6.8 118 22-144 70-201 (428)
273 PTZ00327 eukaryotic translatio 99.2 2.3E-11 5.1E-16 94.4 7.7 115 37-156 117-235 (460)
274 cd01855 YqeH YqeH. YqeH is an 99.2 1.2E-11 2.5E-16 85.9 5.3 112 50-168 24-142 (190)
275 COG3276 SelB Selenocysteine-sp 99.2 8.4E-11 1.8E-15 88.7 10.2 143 7-154 10-162 (447)
276 COG4108 PrfC Peptide chain rel 99.2 8.2E-12 1.8E-16 94.0 4.8 114 4-122 19-164 (528)
277 COG2895 CysN GTPases - Sulfate 99.2 3.4E-11 7.4E-16 88.5 7.1 119 20-144 69-193 (431)
278 TIGR00490 aEF-2 translation el 99.2 1.4E-11 3.1E-16 100.7 5.7 102 2-108 24-152 (720)
279 PRK12289 GTPase RsgA; Reviewed 99.2 1.8E-11 4E-16 92.0 5.7 105 54-169 83-188 (352)
280 cd01850 CDC_Septin CDC/Septin. 99.2 2.9E-11 6.4E-16 88.4 5.7 102 1-108 8-157 (276)
281 cd01859 MJ1464 MJ1464. This f 99.2 8.8E-11 1.9E-15 78.9 6.3 95 51-155 3-97 (156)
282 smart00010 small_GTPase Small 99.2 1.2E-11 2.6E-16 79.7 1.9 105 2-143 5-115 (124)
283 PRK13768 GTPase; Provisional 99.1 6.8E-11 1.5E-15 85.5 5.4 116 37-154 97-247 (253)
284 PRK09866 hypothetical protein; 99.1 1.2E-09 2.6E-14 86.7 12.1 127 22-151 212-350 (741)
285 KOG3886 GTP-binding protein [S 99.1 1.2E-10 2.6E-15 81.1 5.9 107 2-110 9-132 (295)
286 PRK12288 GTPase RsgA; Reviewed 99.1 1.9E-10 4.1E-15 86.5 6.4 104 58-169 118-221 (347)
287 PF03029 ATP_bind_1: Conserved 99.1 3.1E-11 6.8E-16 86.4 1.9 112 38-153 92-236 (238)
288 PF00503 G-alpha: G-protein al 99.1 2.9E-10 6.2E-15 87.2 7.0 132 21-152 219-388 (389)
289 cd01854 YjeQ_engC YjeQ/EngC. 99.1 3E-10 6.6E-15 83.6 5.8 103 55-168 73-176 (287)
290 COG4917 EutP Ethanolamine util 99.1 2.4E-10 5.3E-15 72.2 4.5 133 1-152 5-144 (148)
291 PRK07560 elongation factor EF- 99.1 4.7E-10 1E-14 92.1 7.5 101 2-107 25-152 (731)
292 PRK09435 membrane ATPase/prote 99.0 1.6E-09 3.5E-14 80.8 8.5 111 35-157 147-263 (332)
293 PLN00116 translation elongatio 99.0 5.4E-10 1.2E-14 92.9 6.3 67 36-107 97-163 (843)
294 TIGR03597 GTPase_YqeH ribosome 99.0 1.4E-10 3E-15 87.9 2.6 114 47-168 50-169 (360)
295 COG3596 Predicted GTPase [Gene 99.0 1E-09 2.2E-14 78.5 6.6 151 2-156 44-224 (296)
296 TIGR00750 lao LAO/AO transport 99.0 1.5E-09 3.3E-14 80.4 7.5 107 36-154 126-238 (300)
297 PTZ00416 elongation factor 2; 99.0 7.6E-10 1.6E-14 92.0 6.3 67 36-107 91-157 (836)
298 PRK00098 GTPase RsgA; Reviewed 99.0 3.4E-10 7.4E-15 83.8 3.4 102 57-168 77-179 (298)
299 cd01858 NGP_1 NGP-1. Autoanti 99.0 2.2E-09 4.9E-14 72.2 7.2 88 57-153 5-94 (157)
300 KOG0705 GTPase-activating prot 99.0 3.1E-09 6.7E-14 82.3 7.8 149 2-157 35-192 (749)
301 TIGR00991 3a0901s02IAP34 GTP-b 98.9 8.3E-09 1.8E-13 75.9 9.5 105 1-107 42-166 (313)
302 cd01853 Toc34_like Toc34-like 98.9 5E-09 1.1E-13 75.5 8.0 106 1-108 35-163 (249)
303 COG0480 FusA Translation elong 98.9 4.9E-09 1.1E-13 84.9 8.3 97 7-108 20-142 (697)
304 cd01882 BMS1 Bms1. Bms1 is an 98.9 7.1E-09 1.5E-13 73.8 6.9 132 2-141 44-183 (225)
305 KOG1707 Predicted Ras related/ 98.9 3E-08 6.4E-13 77.4 10.0 143 2-157 430-586 (625)
306 TIGR03596 GTPase_YlqF ribosome 98.8 7.8E-09 1.7E-13 75.8 5.8 100 45-156 5-105 (276)
307 PTZ00258 GTP-binding protein; 98.8 1.7E-08 3.7E-13 76.8 7.8 70 2-71 26-126 (390)
308 KOG0458 Elongation factor 1 al 98.8 1.4E-08 3E-13 79.2 7.2 118 24-144 242-372 (603)
309 KOG1532 GTPase XAB1, interacts 98.8 8.8E-09 1.9E-13 73.8 5.2 118 36-156 115-266 (366)
310 KOG0099 G protein subunit Galp 98.8 5.3E-08 1.1E-12 69.4 8.8 134 24-157 189-372 (379)
311 PF04548 AIG1: AIG1 family; I 98.8 2.7E-09 5.8E-14 75.3 2.3 155 1-157 4-189 (212)
312 cd01857 HSR1_MMR1 HSR1/MMR1. 98.8 1E-08 2.2E-13 67.8 5.0 78 54-141 5-84 (141)
313 KOG3905 Dynein light intermedi 98.8 1E-07 2.2E-12 70.0 10.4 150 2-155 57-291 (473)
314 cd01856 YlqF YlqF. Proteins o 98.8 7.4E-09 1.6E-13 70.7 4.2 91 52-154 11-101 (171)
315 KOG1144 Translation initiation 98.8 2.7E-08 5.9E-13 79.6 7.5 111 39-157 542-690 (1064)
316 KOG0465 Mitochondrial elongati 98.8 5.5E-08 1.2E-12 76.3 8.8 73 30-107 97-169 (721)
317 KOG0461 Selenocysteine-specifi 98.7 1.8E-08 3.9E-13 74.4 5.2 151 2-161 12-200 (522)
318 PF05783 DLIC: Dynein light in 98.7 5.6E-08 1.2E-12 75.7 7.8 156 2-157 30-267 (472)
319 COG5257 GCD11 Translation init 98.7 2.7E-08 5.8E-13 72.8 4.8 119 37-160 86-208 (415)
320 cd01849 YlqF_related_GTPase Yl 98.7 1.2E-07 2.7E-12 63.6 7.2 83 62-153 1-84 (155)
321 PRK13796 GTPase YqeH; Provisio 98.6 4.4E-08 9.5E-13 74.5 4.6 102 59-168 67-175 (365)
322 PRK09563 rbgA GTPase YlqF; Rev 98.6 1.5E-07 3.2E-12 69.5 6.8 101 44-156 7-108 (287)
323 KOG0468 U5 snRNP-specific prot 98.6 1.1E-07 2.5E-12 75.4 5.7 67 35-106 195-261 (971)
324 COG0050 TufB GTPases - transla 98.5 1.8E-07 3.8E-12 67.9 4.9 130 24-157 62-204 (394)
325 KOG0085 G protein subunit Galp 98.5 1.1E-07 2.3E-12 66.8 3.4 138 20-157 182-352 (359)
326 TIGR00101 ureG urease accessor 98.5 1.1E-06 2.3E-11 61.5 8.4 100 37-153 92-195 (199)
327 PRK10463 hydrogenase nickel in 98.5 2.7E-07 5.8E-12 67.5 5.3 56 94-152 230-287 (290)
328 PF00350 Dynamin_N: Dynamin fa 98.5 4.1E-07 8.9E-12 61.6 5.4 65 36-104 100-168 (168)
329 COG0378 HypB Ni2+-binding GTPa 98.4 2.2E-07 4.7E-12 63.6 3.7 79 62-153 119-200 (202)
330 COG1703 ArgK Putative periplas 98.4 1.3E-06 2.8E-11 63.6 7.6 113 35-159 142-259 (323)
331 cd01900 YchF YchF subfamily. 98.4 6.1E-07 1.3E-11 65.5 5.3 70 2-71 3-103 (274)
332 PF05049 IIGP: Interferon-indu 98.3 1.4E-07 2.9E-12 71.4 0.8 147 2-157 40-221 (376)
333 PRK01889 GTPase RsgA; Reviewed 98.3 4.5E-06 9.7E-11 63.4 8.8 84 58-150 110-193 (356)
334 KOG0410 Predicted GTP binding 98.3 4.4E-07 9.5E-12 66.7 2.9 138 4-156 185-343 (410)
335 PF03308 ArgK: ArgK protein; 98.3 5.7E-07 1.2E-11 64.4 2.6 110 35-156 120-232 (266)
336 TIGR02836 spore_IV_A stage IV 98.2 1.1E-05 2.4E-10 61.7 9.3 83 57-148 140-231 (492)
337 TIGR00073 hypB hydrogenase acc 98.2 3.7E-06 7.9E-11 59.2 6.0 57 94-153 148-206 (207)
338 PRK09601 GTP-binding protein Y 98.2 3E-06 6.5E-11 64.1 5.7 70 2-71 7-107 (364)
339 TIGR00993 3a0901s04IAP86 chlor 98.2 5.1E-06 1.1E-10 66.8 7.3 106 1-108 122-250 (763)
340 KOG1486 GTP-binding protein DR 98.2 5.1E-05 1.1E-09 54.3 11.3 144 2-155 67-289 (364)
341 KOG0464 Elongation factor G [T 98.2 8.9E-07 1.9E-11 67.2 2.2 93 24-121 89-184 (753)
342 TIGR03348 VI_IcmF type VI secr 98.1 5.7E-06 1.2E-10 71.6 6.7 106 1-107 115-256 (1169)
343 PF00735 Septin: Septin; Inte 98.0 1E-05 2.2E-10 59.5 5.4 102 1-108 8-156 (281)
344 COG1162 Predicted GTPases [Gen 98.0 1.2E-05 2.5E-10 59.1 5.4 101 57-168 76-179 (301)
345 KOG3887 Predicted small GTPase 98.0 0.00026 5.6E-09 50.5 11.8 120 35-156 73-204 (347)
346 KOG0467 Translation elongation 98.0 1.8E-05 4E-10 64.0 6.6 63 35-105 70-135 (887)
347 PF06858 NOG1: Nucleolar GTP-b 97.9 3.5E-05 7.6E-10 42.2 5.0 44 60-105 13-58 (58)
348 COG5258 GTPBP1 GTPase [General 97.9 0.00012 2.6E-09 55.4 8.8 116 36-157 200-341 (527)
349 KOG0460 Mitochondrial translat 97.9 4.9E-05 1.1E-09 56.5 6.3 104 27-137 105-218 (449)
350 KOG1487 GTP-binding protein DR 97.9 5.4E-05 1.2E-09 54.4 6.1 142 4-155 66-282 (358)
351 cd01857 HSR1_MMR1 HSR1/MMR1. 97.7 1.5E-05 3.2E-10 52.6 1.3 46 1-47 87-138 (141)
352 KOG0466 Translation initiation 97.6 3.2E-05 7E-10 56.7 1.9 121 37-160 125-247 (466)
353 COG5019 CDC3 Septin family pro 97.5 0.00026 5.7E-09 53.2 5.8 103 1-109 27-177 (373)
354 COG0012 Predicted GTPase, prob 97.5 0.00012 2.7E-09 55.1 3.5 70 2-71 7-108 (372)
355 cd03111 CpaE_like This protein 97.5 0.00036 7.9E-09 43.7 5.2 95 5-103 8-106 (106)
356 KOG2655 Septin family protein 97.4 0.00028 6E-09 53.2 5.0 103 1-109 25-173 (366)
357 cd04178 Nucleostemin_like Nucl 97.4 9.2E-05 2E-09 50.6 1.8 43 62-108 1-44 (172)
358 KOG2486 Predicted GTPase [Gene 97.3 8.7E-05 1.9E-09 53.8 1.0 140 4-151 143-313 (320)
359 cd01851 GBP Guanylate-binding 97.3 0.0005 1.1E-08 49.0 4.9 74 2-75 12-106 (224)
360 smart00053 DYNc Dynamin, GTPas 97.3 0.0016 3.4E-08 46.9 7.3 69 37-109 125-207 (240)
361 cd02038 FleN-like FleN is a me 97.3 0.00073 1.6E-08 44.5 5.3 98 4-106 7-109 (139)
362 TIGR00092 GTP-binding protein 97.2 0.00097 2.1E-08 50.8 5.9 70 2-71 7-108 (368)
363 KOG1143 Predicted translation 97.1 0.0078 1.7E-07 45.8 9.6 105 36-145 248-379 (591)
364 COG3523 IcmF Type VI protein s 97.1 0.002 4.3E-08 55.7 7.3 107 1-108 129-270 (1188)
365 cd02042 ParA ParA and ParB of 97.1 0.0013 2.7E-08 40.9 4.6 76 5-84 8-84 (104)
366 KOG0459 Polypeptide release fa 97.0 0.0031 6.7E-08 48.2 6.5 120 23-147 143-279 (501)
367 KOG1547 Septin CDC10 and relat 97.0 0.0038 8.2E-08 44.7 6.4 102 1-108 50-198 (336)
368 COG0523 Putative GTPases (G3E 96.9 0.0056 1.2E-07 46.0 7.4 77 60-146 116-193 (323)
369 TIGR03596 GTPase_YlqF ribosome 96.9 0.00038 8.3E-09 51.2 1.1 44 1-47 122-173 (276)
370 KOG1954 Endocytosis/signaling 96.9 0.0047 1E-07 46.9 6.6 76 38-120 148-234 (532)
371 cd01983 Fer4_NifH The Fer4_Nif 96.8 0.0027 5.9E-08 38.3 4.5 93 4-102 6-99 (99)
372 PRK09563 rbgA GTPase YlqF; Rev 96.8 0.00063 1.4E-08 50.3 1.4 45 1-48 125-177 (287)
373 PRK10416 signal recognition pa 96.7 0.0055 1.2E-07 46.0 6.2 94 35-146 195-302 (318)
374 COG1161 Predicted GTPases [Gen 96.7 0.0037 7.9E-08 47.1 5.3 94 43-147 16-110 (322)
375 TIGR01425 SRP54_euk signal rec 96.7 0.0024 5.2E-08 49.7 4.3 65 36-107 182-252 (429)
376 KOG1491 Predicted GTP-binding 96.7 0.0016 3.6E-08 48.6 3.3 69 3-71 26-125 (391)
377 PRK12288 GTPase RsgA; Reviewed 96.7 0.00082 1.8E-08 51.0 1.6 48 1-51 209-271 (347)
378 PRK14974 cell division protein 96.6 0.0073 1.6E-07 45.7 6.1 96 36-148 222-324 (336)
379 COG1618 Predicted nucleotide k 96.5 0.055 1.2E-06 36.5 8.8 129 4-154 12-176 (179)
380 KOG1424 Predicted GTP-binding 96.4 0.0086 1.9E-07 47.1 5.3 72 57-138 171-244 (562)
381 COG1161 Predicted GTPases [Gen 96.3 0.0012 2.7E-08 49.6 0.5 45 1-48 136-188 (322)
382 KOG0463 GTP-binding protein GP 96.2 0.011 2.5E-07 45.0 5.1 30 126-156 330-359 (641)
383 PRK12289 GTPase RsgA; Reviewed 96.2 0.0017 3.6E-08 49.4 0.6 18 1-18 176-193 (352)
384 KOG0447 Dynamin-like GTP bindi 96.2 0.13 2.7E-06 41.5 10.7 101 36-139 411-526 (980)
385 TIGR03597 GTPase_YqeH ribosome 96.2 0.002 4.2E-08 49.3 0.9 48 1-49 158-216 (360)
386 KOG0469 Elongation factor 2 [T 96.1 0.0046 9.9E-08 48.8 2.6 67 35-106 96-162 (842)
387 cd03110 Fer4_NifH_child This p 96.0 0.057 1.2E-06 36.9 7.6 67 35-108 91-157 (179)
388 PRK11537 putative GTP-binding 96.0 0.0071 1.5E-07 45.5 3.3 66 37-108 91-164 (318)
389 TIGR00157 ribosome small subun 96.0 0.0029 6.3E-08 45.7 1.0 46 1-50 124-184 (245)
390 PRK13796 GTPase YqeH; Provisio 95.9 0.0026 5.7E-08 48.7 0.7 17 2-18 165-181 (365)
391 cd01854 YjeQ_engC YjeQ/EngC. 95.9 0.0019 4E-08 47.9 -0.1 49 2-51 166-227 (287)
392 PF09547 Spore_IV_A: Stage IV 95.9 0.039 8.5E-07 42.9 6.8 71 61-140 146-221 (492)
393 KOG2423 Nucleolar GTPase [Gene 95.9 0.045 9.8E-07 42.1 7.1 92 56-155 209-300 (572)
394 PF07015 VirC1: VirC1 protein; 95.8 0.022 4.7E-07 40.7 4.8 102 36-147 83-187 (231)
395 PF03193 DUF258: Protein of un 95.7 0.00084 1.8E-08 45.2 -2.6 19 1-19 39-57 (161)
396 COG4963 CpaE Flp pilus assembl 95.4 0.15 3.3E-06 38.8 8.3 86 35-124 216-301 (366)
397 COG1162 Predicted GTPases [Gen 95.3 0.0078 1.7E-07 44.5 1.2 18 2-19 169-186 (301)
398 COG5192 BMS1 GTP-binding prote 95.3 0.062 1.3E-06 43.3 6.0 128 3-137 75-209 (1077)
399 PRK00098 GTPase RsgA; Reviewed 95.3 0.007 1.5E-07 45.1 0.8 18 2-19 169-186 (298)
400 PRK12727 flagellar biosynthesi 94.7 0.048 1E-06 43.8 4.1 66 35-107 427-497 (559)
401 PRK14722 flhF flagellar biosyn 94.7 0.097 2.1E-06 40.3 5.5 73 35-107 214-294 (374)
402 KOG2484 GTPase [General functi 94.4 0.09 2E-06 40.4 4.8 65 50-119 136-202 (435)
403 cd00009 AAA The AAA+ (ATPases 94.3 0.089 1.9E-06 33.9 4.2 20 2-21 24-43 (151)
404 PRK13695 putative NTPase; Prov 94.3 0.36 7.9E-06 32.8 7.3 16 2-17 5-20 (174)
405 PF05729 NACHT: NACHT domain 94.0 0.063 1.4E-06 35.7 3.1 47 55-101 74-127 (166)
406 PRK10867 signal recognition pa 94.0 0.14 3E-06 40.2 5.2 64 36-106 183-252 (433)
407 KOG3929 Uncharacterized conser 93.8 0.067 1.5E-06 38.9 3.0 73 2-75 48-134 (363)
408 KOG2485 Conserved ATP/GTP bind 93.3 0.17 3.6E-06 37.8 4.4 106 40-156 25-133 (335)
409 TIGR00064 ftsY signal recognit 93.2 1.5 3.2E-05 32.4 9.3 95 35-146 153-260 (272)
410 KOG0448 Mitofusin 1 GTPase, in 93.2 0.35 7.6E-06 39.8 6.3 65 39-108 208-275 (749)
411 PF14331 ImcF-related_N: ImcF- 93.2 0.63 1.4E-05 34.2 7.3 48 60-108 25-83 (266)
412 COG3640 CooC CO dehydrogenase 92.9 0.52 1.1E-05 33.9 6.1 45 57-107 152-198 (255)
413 cd02036 MinD Bacterial cell di 92.7 1.9 4.2E-05 29.0 8.8 65 38-108 64-128 (179)
414 PRK05703 flhF flagellar biosyn 92.5 0.32 7E-06 38.2 5.3 65 36-107 299-370 (424)
415 PRK10751 molybdopterin-guanine 92.4 0.049 1.1E-06 37.2 0.6 58 3-66 12-69 (173)
416 KOG0780 Signal recognition par 92.1 0.48 1.1E-05 36.6 5.4 40 35-74 182-227 (483)
417 cd03116 MobB Molybdenum is an 92.0 0.035 7.5E-07 37.5 -0.5 46 2-49 6-51 (159)
418 PRK12724 flagellar biosynthesi 91.9 0.17 3.7E-06 39.5 3.0 65 36-107 299-372 (432)
419 COG0411 LivG ABC-type branched 91.2 0.1 2.3E-06 37.5 1.2 25 2-26 35-59 (250)
420 cd03114 ArgK-like The function 91.2 1 2.2E-05 29.9 5.9 58 36-105 91-148 (148)
421 PF00005 ABC_tran: ABC transpo 91.2 0.028 6.2E-07 36.5 -1.6 25 2-26 16-40 (137)
422 cd03112 CobW_like The function 91.1 0.72 1.6E-05 30.9 5.2 65 36-106 86-158 (158)
423 PF03266 NTPase_1: NTPase; In 91.0 0.11 2.3E-06 35.4 1.0 43 2-44 4-52 (168)
424 PF05621 TniB: Bacterial TniB 90.7 0.13 2.7E-06 38.3 1.3 95 2-104 66-190 (302)
425 PF13555 AAA_29: P-loop contai 90.7 0.047 1E-06 30.6 -0.8 16 2-17 28-43 (62)
426 TIGR03574 selen_PSTK L-seryl-t 90.5 0.11 2.4E-06 37.6 0.8 17 2-18 4-20 (249)
427 PF13671 AAA_33: AAA domain; P 90.5 0.032 6.9E-07 36.4 -1.9 18 1-18 3-20 (143)
428 COG1149 MinD superfamily P-loo 90.4 3.8 8.3E-05 30.2 8.4 78 37-122 164-241 (284)
429 PHA02518 ParA-like protein; Pr 90.3 2.3 4.9E-05 29.6 7.3 68 35-106 75-145 (211)
430 TIGR03371 cellulose_yhjQ cellu 89.9 2.4 5.1E-05 30.3 7.3 67 38-108 116-182 (246)
431 PRK12726 flagellar biosynthesi 89.9 0.28 6E-06 38.0 2.5 65 36-107 285-355 (407)
432 KOG4273 Uncharacterized conser 89.7 0.43 9.3E-06 34.7 3.2 48 58-108 76-123 (418)
433 COG1134 TagH ABC-type polysacc 89.3 0.056 1.2E-06 38.8 -1.5 26 2-27 58-83 (249)
434 cd01855 YqeH YqeH. YqeH is an 89.2 0.055 1.2E-06 37.4 -1.6 20 1-20 131-150 (190)
435 TIGR01166 cbiO cobalt transpor 88.9 0.063 1.4E-06 37.1 -1.5 25 2-26 23-47 (190)
436 PRK14723 flhF flagellar biosyn 88.8 0.98 2.1E-05 38.1 5.0 67 36-107 263-336 (767)
437 PF10087 DUF2325: Uncharacteri 88.7 2.7 5.9E-05 25.6 6.0 43 51-100 39-81 (97)
438 COG1136 SalX ABC-type antimicr 88.7 0.061 1.3E-06 38.4 -1.6 25 2-26 36-60 (226)
439 PF13238 AAA_18: AAA domain; P 88.5 0.054 1.2E-06 34.5 -1.9 20 2-21 3-22 (129)
440 cd03255 ABC_MJ0796_Lo1CDE_FtsE 88.4 0.072 1.6E-06 37.6 -1.5 25 2-26 35-59 (218)
441 TIGR00960 3a0501s02 Type II (G 88.2 0.078 1.7E-06 37.4 -1.4 25 2-26 34-58 (216)
442 PRK12723 flagellar biosynthesi 88.1 1.1 2.4E-05 34.8 4.7 66 35-107 253-325 (388)
443 cd03215 ABC_Carb_Monos_II This 88.1 0.073 1.6E-06 36.5 -1.6 25 2-26 31-55 (182)
444 cd03293 ABC_NrtD_SsuB_transpor 88.0 0.079 1.7E-06 37.5 -1.5 25 2-26 35-59 (220)
445 PRK13849 putative crown gall t 88.0 2.9 6.2E-05 30.0 6.5 68 35-105 82-151 (231)
446 cd03269 ABC_putative_ATPase Th 88.0 0.078 1.7E-06 37.2 -1.5 25 2-26 31-55 (210)
447 PF13207 AAA_17: AAA domain; P 88.0 0.072 1.6E-06 33.7 -1.5 20 2-21 4-23 (121)
448 cd03226 ABC_cobalt_CbiO_domain 87.9 0.081 1.7E-06 37.0 -1.4 25 2-26 31-55 (205)
449 cd02037 MRP-like MRP (Multiple 87.8 6.2 0.00013 26.5 7.8 66 35-106 66-133 (169)
450 cd03261 ABC_Org_Solvent_Resist 87.8 0.084 1.8E-06 37.7 -1.5 25 2-26 31-55 (235)
451 cd03229 ABC_Class3 This class 87.7 0.08 1.7E-06 36.2 -1.5 25 2-26 31-55 (178)
452 PF13401 AAA_22: AAA domain; P 87.7 0.063 1.4E-06 34.4 -2.0 44 56-103 81-125 (131)
453 cd03225 ABC_cobalt_CbiO_domain 87.6 0.079 1.7E-06 37.2 -1.7 25 2-26 32-56 (211)
454 COG3911 Predicted ATPase [Gene 87.6 0.077 1.7E-06 35.4 -1.6 25 2-26 14-38 (183)
455 cd03221 ABCF_EF-3 ABCF_EF-3 E 87.5 0.091 2E-06 34.7 -1.3 25 2-26 31-55 (144)
456 cd03263 ABC_subfamily_A The AB 87.5 0.083 1.8E-06 37.3 -1.6 25 2-26 33-57 (220)
457 PRK13541 cytochrome c biogenes 87.4 0.082 1.8E-06 36.7 -1.6 25 2-26 31-55 (195)
458 cd03224 ABC_TM1139_LivF_branch 87.4 0.087 1.9E-06 37.3 -1.6 25 2-26 31-55 (222)
459 PRK11629 lolD lipoprotein tran 87.4 0.091 2E-06 37.5 -1.5 25 2-26 40-64 (233)
460 cd03218 ABC_YhbG The ABC trans 87.3 0.085 1.8E-06 37.6 -1.7 25 2-26 31-55 (232)
461 cd03222 ABC_RNaseL_inhibitor T 87.3 0.072 1.6E-06 36.6 -1.9 25 2-26 30-54 (177)
462 cd03216 ABC_Carb_Monos_I This 87.3 0.088 1.9E-06 35.5 -1.5 25 2-26 31-55 (163)
463 cd03292 ABC_FtsE_transporter F 87.2 0.095 2.1E-06 36.8 -1.4 25 2-26 32-56 (214)
464 smart00382 AAA ATPases associa 87.2 0.082 1.8E-06 33.7 -1.7 17 1-17 6-22 (148)
465 TIGR01007 eps_fam capsular exo 87.1 6 0.00013 27.5 7.7 67 36-107 127-193 (204)
466 TIGR03608 L_ocin_972_ABC putat 87.1 0.093 2E-06 36.6 -1.5 25 2-26 29-53 (206)
467 cd03258 ABC_MetN_methionine_tr 87.1 0.088 1.9E-06 37.6 -1.7 25 2-26 36-60 (233)
468 cd03266 ABC_NatA_sodium_export 87.1 0.092 2E-06 37.0 -1.6 25 2-26 36-60 (218)
469 PF13191 AAA_16: AAA ATPase do 86.9 0.081 1.7E-06 36.0 -1.9 16 2-17 29-44 (185)
470 cd03265 ABC_DrrA DrrA is the A 86.9 0.099 2.2E-06 37.0 -1.5 25 2-26 31-55 (220)
471 cd03296 ABC_CysA_sulfate_impor 86.7 0.11 2.3E-06 37.4 -1.4 25 2-26 33-57 (239)
472 COG1122 CbiO ABC-type cobalt t 86.6 0.09 1.9E-06 37.8 -1.8 25 2-26 35-59 (235)
473 cd03259 ABC_Carb_Solutes_like 86.6 0.11 2.3E-06 36.6 -1.5 25 2-26 31-55 (213)
474 KOG2485 Conserved ATP/GTP bind 86.6 0.24 5.2E-06 37.0 0.3 16 1-16 147-162 (335)
475 TIGR02315 ABC_phnC phosphonate 86.5 0.11 2.3E-06 37.4 -1.5 25 2-26 33-57 (243)
476 cd03257 ABC_NikE_OppD_transpor 86.5 0.1 2.2E-06 37.0 -1.6 25 2-26 36-60 (228)
477 PF04665 Pox_A32: Poxvirus A32 86.5 0.14 3E-06 36.9 -0.9 15 2-16 18-32 (241)
478 COG4167 SapF ABC-type antimicr 86.4 0.089 1.9E-06 36.5 -1.8 25 2-26 44-68 (267)
479 PRK07261 topology modulation p 86.4 0.1 2.2E-06 35.5 -1.6 18 2-19 5-22 (171)
480 PRK13543 cytochrome c biogenes 86.3 0.11 2.4E-06 36.7 -1.5 25 2-26 42-66 (214)
481 PTZ00293 thymidine kinase; Pro 86.3 1.7 3.7E-05 30.8 4.4 41 59-107 76-116 (211)
482 cd03301 ABC_MalK_N The N-termi 86.3 0.11 2.4E-06 36.5 -1.5 25 2-26 31-55 (213)
483 PRK15177 Vi polysaccharide exp 86.3 0.11 2.3E-06 36.8 -1.6 25 2-26 18-42 (213)
484 TIGR02673 FtsE cell division A 86.2 0.11 2.3E-06 36.6 -1.6 25 2-26 33-57 (214)
485 cd03235 ABC_Metallic_Cations A 86.2 0.11 2.3E-06 36.6 -1.6 25 2-26 30-54 (213)
486 cd03264 ABC_drug_resistance_li 86.1 0.11 2.3E-06 36.5 -1.6 25 2-26 30-54 (211)
487 TIGR02211 LolD_lipo_ex lipopro 86.1 0.11 2.3E-06 36.8 -1.7 25 2-26 36-60 (221)
488 PRK10908 cell division protein 86.1 0.12 2.5E-06 36.7 -1.5 25 2-26 33-57 (222)
489 PRK04195 replication factor C 86.1 0.45 9.7E-06 38.0 1.7 19 2-20 44-62 (482)
490 PRK13185 chlL protochlorophyll 86.1 3.3 7.2E-05 30.2 6.1 69 36-106 117-186 (270)
491 TIGR03864 PQQ_ABC_ATP ABC tran 86.1 0.12 2.6E-06 37.0 -1.5 25 2-26 32-56 (236)
492 PRK01889 GTPase RsgA; Reviewed 86.0 0.1 2.2E-06 40.0 -1.9 25 2-26 200-224 (356)
493 cd03247 ABCC_cytochrome_bd The 85.9 0.11 2.3E-06 35.6 -1.7 25 2-26 33-57 (178)
494 PRK13638 cbiO cobalt transport 85.9 0.12 2.7E-06 37.8 -1.5 25 2-26 32-56 (271)
495 KOG3859 Septins (P-loop GTPase 85.9 0.22 4.9E-06 36.7 -0.1 44 3-46 48-104 (406)
496 cd02032 Bchl_like This family 85.9 3.4 7.3E-05 30.1 6.1 66 36-106 115-184 (267)
497 cd03246 ABCC_Protease_Secretio 85.9 0.1 2.2E-06 35.5 -1.8 25 2-26 33-57 (173)
498 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 85.8 0.13 2.8E-06 36.6 -1.4 25 2-26 53-77 (224)
499 TIGR01189 ccmA heme ABC export 85.8 0.11 2.5E-06 36.1 -1.6 25 2-26 31-55 (198)
500 PRK11231 fecE iron-dicitrate t 85.8 0.12 2.6E-06 37.5 -1.6 25 2-26 33-57 (255)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.1e-38 Score=210.77 Aligned_cols=154 Identities=21% Similarity=0.323 Sum_probs=128.2
Q ss_pred CccccCCCCCceeeeec-----eeeeeeeeeEEEEE----EEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931 1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK----VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL 71 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~ 71 (169)
+|++..|+|||||+.|| .+.+.+|+|+++.. ++.+.++++||||+||++|+.+...||++|||+|+|||++
T Consensus 13 iliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT 92 (205)
T KOG0084|consen 13 ILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDIT 92 (205)
T ss_pred EEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcc
Confidence 36789999999999986 78999999987754 3447899999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeE-EEEeeeccCCCHHHHHHH
Q 030931 72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWH-IQGTCALKGDGLYEGLDW 148 (169)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~~~~~ 148 (169)
+.++|+.+..|+.++.+.. ..+.|.++||||+|+.+.. +.++ ...+ ....+++ ++|+||+++.|+++.|..
T Consensus 93 ~~~SF~~v~~Wi~Ei~~~~-~~~v~~lLVGNK~Dl~~~~~v~~~~-a~~f----a~~~~~~~f~ETSAK~~~NVe~~F~~ 166 (205)
T KOG0084|consen 93 KQESFNNVKRWIQEIDRYA-SENVPKLLVGNKCDLTEKRVVSTEE-AQEF----ADELGIPIFLETSAKDSTNVEDAFLT 166 (205)
T ss_pred cHHHhhhHHHHHHHhhhhc-cCCCCeEEEeeccccHhheecCHHH-HHHH----HHhcCCcceeecccCCccCHHHHHHH
Confidence 9999999999999996543 4578999999999997643 2222 2222 2334455 999999999999999999
Q ss_pred HHHHHHhhhccc
Q 030931 149 LASTLKEMRAAG 160 (169)
Q Consensus 149 l~~~~~~~~~~~ 160 (169)
+...+.++....
T Consensus 167 la~~lk~~~~~~ 178 (205)
T KOG0084|consen 167 LAKELKQRKGLH 178 (205)
T ss_pred HHHHHHHhcccC
Confidence 999998876443
No 2
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.8e-37 Score=203.92 Aligned_cols=153 Identities=18% Similarity=0.273 Sum_probs=131.2
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEEE--E--EECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK--V--QYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~--~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
.++.+++|||||++|| ...|.+|+|+++.. + ....+.+++|||+|||+|+.+.+.|++++.++|+|||+++
T Consensus 27 flGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~ 106 (221)
T KOG0094|consen 27 FLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITD 106 (221)
T ss_pred EEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccc
Confidence 4678999999999986 88999999988755 3 3368999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAST 152 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 152 (169)
..+|+...+|+++.++++...+.-+++||||.||.+. +++....+...++..+..|+++||+.|.||.++|..+...
T Consensus 107 ~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dk---rqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrIaa~ 183 (221)
T KOG0094|consen 107 RNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDK---RQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRIAAA 183 (221)
T ss_pred cchHHHHHHHHHHHHhccCCCceEEEEEcccccccch---hhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHHHHh
Confidence 9999999999999998877767999999999999764 3443333333334556679999999999999999999988
Q ss_pred HHhhh
Q 030931 153 LKEMR 157 (169)
Q Consensus 153 ~~~~~ 157 (169)
++...
T Consensus 184 l~~~~ 188 (221)
T KOG0094|consen 184 LPGME 188 (221)
T ss_pred ccCcc
Confidence 88764
No 3
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.5e-36 Score=200.81 Aligned_cols=153 Identities=22% Similarity=0.239 Sum_probs=127.8
Q ss_pred CccccCCCCCceeeeec-----eeeeeeeeeEEEEE--EEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931 1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK--VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL 71 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~ 71 (169)
+||+..++|||||+.|| .+...||+|.-+.+ +.. ..+++.||||+||++|.++.+.||++|+++|+|||++
T Consensus 9 vLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit 88 (200)
T KOG0092|consen 9 VLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDIT 88 (200)
T ss_pred EEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEEEEecc
Confidence 47889999999999987 55668999955543 444 4599999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC--CCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHH
Q 030931 72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG--AMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149 (169)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 149 (169)
+.+||...+.|+.++-+... +++-+.+||||+|+.+ +++.++... ..++.+..|+|+||++|.|++++|..|
T Consensus 89 ~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~~~ea~~-----yAe~~gll~~ETSAKTg~Nv~~if~~I 162 (200)
T KOG0092|consen 89 DEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERREVEFEEAQA-----YAESQGLLFFETSAKTGENVNEIFQAI 162 (200)
T ss_pred cHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcccccHHHHHH-----HHHhcCCEEEEEecccccCHHHHHHHH
Confidence 99999999999999866543 7889999999999987 334444322 224566779999999999999999999
Q ss_pred HHHHHhhhcc
Q 030931 150 ASTLKEMRAA 159 (169)
Q Consensus 150 ~~~~~~~~~~ 159 (169)
.+.+++....
T Consensus 163 a~~lp~~~~~ 172 (200)
T KOG0092|consen 163 AEKLPCSDPQ 172 (200)
T ss_pred HHhccCcccc
Confidence 9999887543
No 4
>PLN00223 ADP-ribosylation factor; Provisional
Probab=100.00 E-value=5.9e-35 Score=201.21 Aligned_cols=155 Identities=48% Similarity=0.893 Sum_probs=135.6
Q ss_pred ccccCCCCCceeeeece----eeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH
Q 030931 2 LRVKQPYCTSCTLVKFY----LLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG 77 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~----~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~ 77 (169)
+++.+++|||||++++. ..+.||+++++..++..++.+++||+||+++++.+|..+++++|++|+|||+++++++.
T Consensus 22 ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~ 101 (181)
T PLN00223 22 MVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVV 101 (181)
T ss_pred EECCCCCCHHHHHHHHccCCCccccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHH
Confidence 56799999999999873 34678999988888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhh
Q 030931 78 KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM 156 (169)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (169)
....++..++.....++.|+++++||+|+.+....+++.+.++......+.+.+++|||++|+|+.++|+|+.+.+.++
T Consensus 102 ~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~~~~ 180 (181)
T PLN00223 102 EARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180 (181)
T ss_pred HHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHHHHHHhhc
Confidence 9998888887655556899999999999988777788888887665555667788999999999999999999887654
No 5
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=100.00 E-value=2.1e-34 Score=197.59 Aligned_cols=152 Identities=51% Similarity=0.913 Sum_probs=133.1
Q ss_pred ccccCCCCCceeeeec----eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH
Q 030931 2 LRVKQPYCTSCTLVKF----YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG 77 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f----~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~ 77 (169)
+++.+|+|||||++++ ...+.||++.++..+..+.+.+++|||||++++..+|..++++++++|+|||++++++++
T Consensus 18 l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~ 97 (175)
T smart00177 18 MVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRID 97 (175)
T ss_pred EEcCCCCCHHHHHHHHhcCCCCCcCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHH
Confidence 6779999999999987 234678999888888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHH
Q 030931 78 KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL 153 (169)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~ 153 (169)
....|+..++.....++.|+++|+||+|+.+..+.+++.+.++......+.+.++++||++|.|+.++|+||...+
T Consensus 98 ~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 98 EAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred HHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 9999999887654456799999999999987667778888777665566677788999999999999999998765
No 6
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=100.00 E-value=4.2e-34 Score=194.86 Aligned_cols=150 Identities=53% Similarity=0.919 Sum_probs=128.9
Q ss_pred ccccCCCCCceeeeece----eeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH
Q 030931 2 LRVKQPYCTSCTLVKFY----LLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG 77 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~----~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~ 77 (169)
+++.+++|||||++++. ..+.||++.+...+...++++++|||||++++..++..+++++|++|+|||++++.+|.
T Consensus 14 i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~ 93 (168)
T cd04149 14 MLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRID 93 (168)
T ss_pred EECcCCCCHHHHHHHHccCCCccccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHH
Confidence 56799999999999872 34678889888777888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931 78 KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS 151 (169)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (169)
....|+.++++....++.|+++|+||+|+.+....+++.+.++........+.++++||++|.|+.++|+||.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 94 EARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred HHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHHhc
Confidence 99999988877544567999999999999776667777777665544555678999999999999999999864
No 7
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=100.00 E-value=5.8e-34 Score=192.55 Aligned_cols=150 Identities=55% Similarity=0.967 Sum_probs=128.1
Q ss_pred ccccCCCCCceeeeec----eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH
Q 030931 2 LRVKQPYCTSCTLVKF----YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG 77 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f----~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~ 77 (169)
+++.+++|||||++++ ...+.||++++...+....+.+.+||+||++++..++..+++++|++++|||++++.++.
T Consensus 5 ~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~ 84 (159)
T cd04150 5 MVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIG 84 (159)
T ss_pred EECCCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHH
Confidence 5679999999999987 234678999888778888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931 78 KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS 151 (169)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (169)
...+|+..++......+.|+++++||+|+.+....+++...+++.....+.+.++++||++|.|++++|+||..
T Consensus 85 ~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 85 EAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred HHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 99998888876544457899999999999765555666666665555556677899999999999999999864
No 8
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=100.00 E-value=1.5e-33 Score=194.44 Aligned_cols=156 Identities=50% Similarity=0.902 Sum_probs=134.5
Q ss_pred ccccCCCCCceeeeece----eeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH
Q 030931 2 LRVKQPYCTSCTLVKFY----LLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG 77 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~----~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~ 77 (169)
|++.+++|||||++++. ..+.||++.++..++..++.+++|||||+++++.++..+++++|++|+|||+++++++.
T Consensus 22 lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~ 101 (182)
T PTZ00133 22 MVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIG 101 (182)
T ss_pred EEcCCCCCHHHHHHHHhcCCccccCCccccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHH
Confidence 56799999999999872 23568999888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhhh
Q 030931 78 KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR 157 (169)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 157 (169)
....++..++......+.|+++|+||.|+.+....+++...++...+..+.+.++++||++|.|+.++|+|+.+.+.++.
T Consensus 102 ~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i~~~~ 181 (182)
T PTZ00133 102 DAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSANIKKSM 181 (182)
T ss_pred HHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHHHHHHHhc
Confidence 99888888876544457899999999999876667777777777655666677889999999999999999998877653
No 9
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-34 Score=196.48 Aligned_cols=152 Identities=18% Similarity=0.278 Sum_probs=125.7
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEEE--EE--ECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK--VQ--YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~--~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
|++..|+|||||+.|| ...+..|+|+++.. +. ...+++++|||+||++|+.+...|+++|+++++|||+++
T Consensus 17 liGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitn 96 (207)
T KOG0078|consen 17 LIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITN 96 (207)
T ss_pred EECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccc
Confidence 5679999999999986 67888999977643 33 367999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAST 152 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 152 (169)
..+|+.+..|+..+-++. ..++|+++||||+|+.... ++....+...+...++.++|+||++|.||.+.|-.+++.
T Consensus 97 e~Sfeni~~W~~~I~e~a-~~~v~~~LvGNK~D~~~~R---~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~La~~ 172 (207)
T KOG0078|consen 97 EKSFENIRNWIKNIDEHA-SDDVVKILVGNKCDLEEKR---QVSKERGEALAREYGIKFFETSAKTNFNIEEAFLSLARD 172 (207)
T ss_pred hHHHHHHHHHHHHHHhhC-CCCCcEEEeeccccccccc---cccHHHHHHHHHHhCCeEEEccccCCCCHHHHHHHHHHH
Confidence 999999999999986543 3589999999999997632 222222222234456679999999999999999999999
Q ss_pred HHhhh
Q 030931 153 LKEMR 157 (169)
Q Consensus 153 ~~~~~ 157 (169)
+.++.
T Consensus 173 i~~k~ 177 (207)
T KOG0078|consen 173 ILQKL 177 (207)
T ss_pred HHhhc
Confidence 98754
No 10
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=4.1e-34 Score=199.61 Aligned_cols=151 Identities=16% Similarity=0.205 Sum_probs=119.6
Q ss_pred CccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEEC--CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931 1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL 71 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~ 71 (169)
++++..|+|||||++|| .+.+.||++..+ ..+..+ .+++++|||+|+++|..++..++++++++|+|||++
T Consensus 4 vvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvt 83 (202)
T cd04120 4 IIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDIT 83 (202)
T ss_pred EEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECc
Confidence 36789999999999976 456778887654 345554 488999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHH
Q 030931 72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149 (169)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 149 (169)
++++|+.+..|+..+.+. ...+.|+++||||+|+.+.. ...+. ..+.. ...++.|++|||++|.||+++|+++
T Consensus 84 d~~Sf~~l~~w~~~i~~~-~~~~~piilVgNK~DL~~~~~v~~~~~-~~~a~---~~~~~~~~etSAktg~gV~e~F~~l 158 (202)
T cd04120 84 KKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREISRQQG-EKFAQ---QITGMRFCEASAKDNFNVDEIFLKL 158 (202)
T ss_pred CHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHH-HHHHH---hcCCCEEEEecCCCCCCHHHHHHHH
Confidence 999999999999876443 34579999999999996432 22221 11110 1124579999999999999999999
Q ss_pred HHHHHhh
Q 030931 150 ASTLKEM 156 (169)
Q Consensus 150 ~~~~~~~ 156 (169)
+..+.+.
T Consensus 159 ~~~~~~~ 165 (202)
T cd04120 159 VDDILKK 165 (202)
T ss_pred HHHHHHh
Confidence 9988664
No 11
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.5e-33 Score=184.84 Aligned_cols=154 Identities=54% Similarity=0.962 Sum_probs=143.7
Q ss_pred cccCCCCCceeeeec----eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHH
Q 030931 3 RVKQPYCTSCTLVKF----YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGK 78 (169)
Q Consensus 3 ~~~~~~~Ktsll~~f----~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~ 78 (169)
++=+++||||+++++ .-.+.||+|+++..+.++++.+++||.+||++++..|+.|++..+++|||+|.+|++++..
T Consensus 23 lGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~e 102 (181)
T KOG0070|consen 23 VGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEE 102 (181)
T ss_pred EeccCCCceeeeEeeccCCcccCCCccccceeEEEEcceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHHHHHH
Confidence 456899999999987 2344999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhh
Q 030931 79 AKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM 156 (169)
Q Consensus 79 ~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (169)
.+..+..++.+...++.|+++++||.|++++.+..++.+.+++..+..+.+.+..|+|.+|+|+.+.++|+...+..+
T Consensus 103 ak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 103 AKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYEGLDWLSNNLKKR 180 (181)
T ss_pred HHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccccHHHHHHHHHHHHhcc
Confidence 999999999988788999999999999999999999999999998889999999999999999999999999887654
No 12
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=100.00 E-value=7.7e-33 Score=188.83 Aligned_cols=157 Identities=42% Similarity=0.740 Sum_probs=131.1
Q ss_pred CccccCCCCCceeeeece----eeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhH
Q 030931 1 MLRVKQPYCTSCTLVKFY----LLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERI 76 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f~----~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~ 76 (169)
++++.+++|||||++++. ..+.||++.++..+++.++.+++|||||++++..++..+++.+|++++|+|+++++++
T Consensus 3 vlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~ 82 (169)
T cd04158 3 VTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRV 82 (169)
T ss_pred EEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHHHH
Confidence 367899999999999872 3478899988888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCC-CCceeEEEEeeeccCCCHHHHHHHHHHHHHh
Q 030931 77 GKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDL-KNRKWHIQGTCALKGDGLYEGLDWLASTLKE 155 (169)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 155 (169)
..+..|+..+++.....+.|+++|+||+|+.+..+.+++.+.+..... ..+.+.+++|||++|.|+.++|+|+++.+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~~ 162 (169)
T cd04158 83 SEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVA 162 (169)
T ss_pred HHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHhh
Confidence 999999999987544457899999999999766666666555443222 1234578899999999999999999987766
Q ss_pred hh
Q 030931 156 MR 157 (169)
Q Consensus 156 ~~ 157 (169)
..
T Consensus 163 ~~ 164 (169)
T cd04158 163 AG 164 (169)
T ss_pred cc
Confidence 53
No 13
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-34 Score=191.50 Aligned_cols=155 Identities=21% Similarity=0.298 Sum_probs=131.0
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEE----EEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV----EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~----~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
+.+..|+|||+|+.|| .+.+..|+|+.+ .+++.+.++++||||+||+.|++....||++|.++++|||+++
T Consensus 11 iiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~ 90 (216)
T KOG0098|consen 11 IIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITR 90 (216)
T ss_pred EECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccc
Confidence 5679999999999976 667778898765 3456689999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAST 152 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 152 (169)
+++|..+..|+.++.... .+++.++++|||+|+.... ++.++.+..+++..+..++++||++++|+++.|......
T Consensus 91 r~sF~hL~~wL~D~rq~~-~~NmvImLiGNKsDL~~rR---~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~nta~~ 166 (216)
T KOG0098|consen 91 RESFNHLTSWLEDARQHS-NENMVIMLIGNKSDLEARR---EVSKEEGEAFAREHGLIFMETSAKTAENVEEAFINTAKE 166 (216)
T ss_pred hhhHHHHHHHHHHHHHhc-CCCcEEEEEcchhhhhccc---cccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHHHHHH
Confidence 999999999999997643 4789999999999996542 344444434445667789999999999999999999998
Q ss_pred HHhhhccc
Q 030931 153 LKEMRAAG 160 (169)
Q Consensus 153 ~~~~~~~~ 160 (169)
+.+..+.+
T Consensus 167 Iy~~~q~g 174 (216)
T KOG0098|consen 167 IYRKIQDG 174 (216)
T ss_pred HHHHHHhc
Confidence 88876554
No 14
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=1.1e-33 Score=195.77 Aligned_cols=150 Identities=13% Similarity=0.164 Sum_probs=121.0
Q ss_pred CccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931 1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL 71 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~ 71 (169)
++++.+|+|||||+++| .+.+.||.+..+ ..+.. ..+.+++|||+|++++..++..+++++|++|+|||++
T Consensus 10 vviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t 89 (189)
T cd04121 10 LLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDIT 89 (189)
T ss_pred EEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECc
Confidence 46789999999999987 344556766544 33444 3588999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHH
Q 030931 72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149 (169)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 149 (169)
++.+|+.+..|++++.+.. ++.|+++||||+|+... .+.++... + .+..+++|++|||++|.||+++|+++
T Consensus 90 ~~~Sf~~~~~w~~~i~~~~--~~~piilVGNK~DL~~~~~v~~~~~~~-~----a~~~~~~~~e~SAk~g~~V~~~F~~l 162 (189)
T cd04121 90 NRWSFDGIDRWIKEIDEHA--PGVPKILVGNRLHLAFKRQVATEQAQA-Y----AERNGMTFFEVSPLCNFNITESFTEL 162 (189)
T ss_pred CHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccchhccCCCHHHHHH-H----HHHcCCEEEEecCCCCCCHHHHHHHH
Confidence 9999999999999996543 58999999999999653 23222221 2 13445679999999999999999999
Q ss_pred HHHHHhhh
Q 030931 150 ASTLKEMR 157 (169)
Q Consensus 150 ~~~~~~~~ 157 (169)
++.+...+
T Consensus 163 ~~~i~~~~ 170 (189)
T cd04121 163 ARIVLMRH 170 (189)
T ss_pred HHHHHHhc
Confidence 98887654
No 15
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=100.00 E-value=1.2e-32 Score=188.68 Aligned_cols=152 Identities=40% Similarity=0.735 Sum_probs=139.9
Q ss_pred ccccCCCCCceeeeec----eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH
Q 030931 2 LRVKQPYCTSCTLVKF----YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG 77 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f----~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~ 77 (169)
+++-++||||||++++ ...+.||.|++...+.+.++.+.+||.+|+..++..|+.++++++++|||+|.++.+++.
T Consensus 19 ilGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~ 98 (175)
T PF00025_consen 19 ILGLDGSGKTTLLNRLKNGEISETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQ 98 (175)
T ss_dssp EEESTTSSHHHHHHHHHSSSEEEEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHH
T ss_pred EECCCccchHHHHHHhhhccccccCcccccccceeeeCcEEEEEEeccccccccccceeeccccceeEEEEecccceeec
Confidence 5678999999999976 356889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCC-CceeEEEEeeeccCCCHHHHHHHHHHHH
Q 030931 78 KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLK-NRKWHIQGTCALKGDGLYEGLDWLASTL 153 (169)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~~~~~l~~~~ 153 (169)
.....+..++......+.|+++++||+|++++.+.+++...+....+. .+.+.++.|||.+|+|+.+.|+||.+.+
T Consensus 99 e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 99 EAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp HHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred ccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHHHHHHHHhcC
Confidence 999999999987777799999999999999888889998888877765 7788999999999999999999999864
No 16
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=100.00 E-value=1.4e-32 Score=178.78 Aligned_cols=155 Identities=35% Similarity=0.654 Sum_probs=144.6
Q ss_pred ccccCCCCCceeeeec----eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH
Q 030931 2 LRVKQPYCTSCTLVKF----YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG 77 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f----~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~ 77 (169)
+++=++||||+|+++| .+...||.|++..++.++++.+++||++||..+++.|+.||.++||+|+|+|++|+.+++
T Consensus 21 iLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~ 100 (185)
T KOG0073|consen 21 ILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQ 100 (185)
T ss_pred EEecCCCCchhHHHHhcCCCccccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHH
Confidence 3557899999999998 567789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCC-CCceeEEEEeeeccCCCHHHHHHHHHHHHHhh
Q 030931 78 KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDL-KNRKWHIQGTCALKGDGLYEGLDWLASTLKEM 156 (169)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (169)
+....++.++.+....+.|+++++||.|++.+.+.+++...+++..+ ++.+++.+.|||.+|+++.+.++|++..+.++
T Consensus 101 e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidWL~~~l~~r 180 (185)
T KOG0073|consen 101 ECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDWLCDDLMSR 180 (185)
T ss_pred HHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHHHHHHHHHHHHH
Confidence 99999999998877889999999999999988999999988888777 78899999999999999999999999988874
No 17
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=3.4e-34 Score=189.80 Aligned_cols=156 Identities=13% Similarity=0.169 Sum_probs=128.5
Q ss_pred CccccCCCCCceeeeec-----eeeeeeeeeEEEEE----EEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931 1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK----VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL 71 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~ 71 (169)
++++..|.|||||+++| ...+..|+|..+.+ ++...+.++||||+||++|+++...++++||++++|||++
T Consensus 13 iiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~ 92 (210)
T KOG0394|consen 13 IILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN 92 (210)
T ss_pred EEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEEEEeecC
Confidence 36789999999999964 88999999977655 3446799999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHhcCCC---CCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCC-CCceeEEEEeeeccCCCHHHHHH
Q 030931 72 DRERIGKAKQEFQAIIKDPF---MLNSVILVFANKQDMKGAMTPMEVCEGLGLFDL-KNRKWHIQGTCALKGDGLYEGLD 147 (169)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~---~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~~~~ 147 (169)
++.+|+.+..|..+++.... ....|.+++|||+|+.+..+ +.+.....+.+. .+.+++|||+|||...||.+.|.
T Consensus 93 ~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~-r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~~AFe 171 (210)
T KOG0394|consen 93 NPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKS-RQVSEKKAQTWCKSKGNIPYFETSAKEATNVDEAFE 171 (210)
T ss_pred ChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCcc-ceeeHHHHHHHHHhcCCceeEEecccccccHHHHHH
Confidence 99999999999999988543 23589999999999965321 222222333333 35578999999999999999999
Q ss_pred HHHHHHHhhh
Q 030931 148 WLASTLKEMR 157 (169)
Q Consensus 148 ~l~~~~~~~~ 157 (169)
.+.+.+.+..
T Consensus 172 ~ia~~aL~~E 181 (210)
T KOG0394|consen 172 EIARRALANE 181 (210)
T ss_pred HHHHHHHhcc
Confidence 9998877754
No 18
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=100.00 E-value=2e-32 Score=186.40 Aligned_cols=150 Identities=29% Similarity=0.472 Sum_probs=130.8
Q ss_pred ccccCCCCCceeeeec----eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH
Q 030931 2 LRVKQPYCTSCTLVKF----YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG 77 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f----~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~ 77 (169)
+++.+|+|||||++++ ...+.||+++....+..+++.+++||+||+++++.+|..++++++++|+|||+++..++.
T Consensus 4 ~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~ 83 (167)
T cd04161 4 TVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQ 83 (167)
T ss_pred EECCCCCCHHHHHHHHhCCCCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHH
Confidence 5779999999999976 557789999888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCC---CceeEEEEeeeccC------CCHHHHHHH
Q 030931 78 KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLK---NRKWHIQGTCALKG------DGLYEGLDW 148 (169)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~------~gi~~~~~~ 148 (169)
.+..|+..+++.....+.|+++|+||+|+.+..+..++.+.+....+. ...+++++|||++| .|+.+.|+|
T Consensus 84 ~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~w 163 (167)
T cd04161 84 EVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRW 163 (167)
T ss_pred HHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHH
Confidence 999999999876555689999999999998877777777776655432 23567888999998 899999999
Q ss_pred HHH
Q 030931 149 LAS 151 (169)
Q Consensus 149 l~~ 151 (169)
|..
T Consensus 164 l~~ 166 (167)
T cd04161 164 LLA 166 (167)
T ss_pred Hhc
Confidence 975
No 19
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=2e-33 Score=192.48 Aligned_cols=153 Identities=14% Similarity=0.138 Sum_probs=118.7
Q ss_pred CccccCCCCCceeeeec-----eeeeeeeeeEEEEE-EE--ECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK-VQ--YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~-~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
++++.+|+|||||+.+| .+.+.||++..+.. +. ...++++||||+|++++..++..++++++++|+|||+++
T Consensus 5 vv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~ 84 (176)
T cd04133 5 VTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLIS 84 (176)
T ss_pred EEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEEcCC
Confidence 46789999999999976 56788999865532 22 356899999999999999999999999999999999999
Q ss_pred hhhHHHH-HHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-------HhHHHhhhCCCCCCCcee-EEEEeeeccCCCHH
Q 030931 73 RERIGKA-KQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-------PMEVCEGLGLFDLKNRKW-HIQGTCALKGDGLY 143 (169)
Q Consensus 73 ~~~~~~~-~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~ 143 (169)
+++|+.+ ..|+.++.+.. ++.|+++||||+|+.+... ...+....+.......+. .|+||||++|.||+
T Consensus 85 ~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~ 162 (176)
T cd04133 85 RASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNVK 162 (176)
T ss_pred HHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCHH
Confidence 9999998 68999886543 4799999999999964311 001111111111233344 59999999999999
Q ss_pred HHHHHHHHHHHh
Q 030931 144 EGLDWLASTLKE 155 (169)
Q Consensus 144 ~~~~~l~~~~~~ 155 (169)
++|+.+++.+.+
T Consensus 163 ~~F~~~~~~~~~ 174 (176)
T cd04133 163 AVFDAAIKVVLQ 174 (176)
T ss_pred HHHHHHHHHHhc
Confidence 999999987643
No 20
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=100.00 E-value=3.1e-32 Score=184.99 Aligned_cols=149 Identities=28% Similarity=0.481 Sum_probs=127.6
Q ss_pred CccccCCCCCceeeeec-----eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhh
Q 030931 1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRER 75 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~ 75 (169)
++++.+|+|||||+++| .+.+.||+++....++.+++++.+||++|+++++.++..+++++|++++|||.+++.+
T Consensus 3 ~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s 82 (164)
T cd04162 3 LVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSER 82 (164)
T ss_pred EEECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHH
Confidence 36789999999999976 4567899998887888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCC-CCceeEEEEeeecc------CCCHHHHHHH
Q 030931 76 IGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDL-KNRKWHIQGTCALK------GDGLYEGLDW 148 (169)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~------~~gi~~~~~~ 148 (169)
+.....|+..++... ++.|+++|+||+|+.+.....++...++.... ..+++++++|||++ ++|++++|+.
T Consensus 83 ~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~ 160 (164)
T cd04162 83 LPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQ 160 (164)
T ss_pred HHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHHH
Confidence 999999998886543 58999999999999877666666555554444 45678899999998 9999999998
Q ss_pred HHH
Q 030931 149 LAS 151 (169)
Q Consensus 149 l~~ 151 (169)
++.
T Consensus 161 ~~~ 163 (164)
T cd04162 161 LIN 163 (164)
T ss_pred Hhc
Confidence 763
No 21
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=100.00 E-value=4.7e-32 Score=183.37 Aligned_cols=150 Identities=36% Similarity=0.641 Sum_probs=125.1
Q ss_pred ccccCCCCCceeeeece------eeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhh
Q 030931 2 LRVKQPYCTSCTLVKFY------LLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRER 75 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~------~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~ 75 (169)
+++.+++|||||++++. +.+.||+++....+..+++.+++|||||++++..++..+++.++++|+|+|+++..+
T Consensus 4 ~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~ 83 (162)
T cd04157 4 VVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLR 83 (162)
T ss_pred EECCCCCCHHHHHHHHcccCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHH
Confidence 67899999999999773 346788888777777889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCC--CCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931 76 IGKAKQEFQAIIKDPF--MLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS 151 (169)
Q Consensus 76 ~~~~~~~~~~~~~~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (169)
+.....|+..+++... ..+.|+++|+||+|+.+.....++...+.........++++++||++|.|++++|+|+.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 84 LVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred HHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHhc
Confidence 9988888888866432 247999999999999766555666665554433344567999999999999999999865
No 22
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=100.00 E-value=3.2e-32 Score=186.38 Aligned_cols=150 Identities=35% Similarity=0.697 Sum_probs=127.7
Q ss_pred ccccCCCCCceeeeec----eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH
Q 030931 2 LRVKQPYCTSCTLVKF----YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG 77 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f----~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~ 77 (169)
+++.+|+|||||++++ ...+.||+++....+..+.+.+.+|||||++.+..++..++++++++++|||++++.++.
T Consensus 19 ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~ 98 (173)
T cd04154 19 ILGLDNAGKTTILKKLLGEDIDTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLD 98 (173)
T ss_pred EECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHH
Confidence 5679999999999987 345678888877778888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931 78 KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS 151 (169)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (169)
....|+..++......+.|+++|+||+|+.+....+++.+.+.........++++++||++|.|++++|+++..
T Consensus 99 ~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 99 DCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred HHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHHhc
Confidence 99999988876544568999999999999766666666666654433456778999999999999999999864
No 23
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=4.3e-33 Score=193.51 Aligned_cols=155 Identities=17% Similarity=0.186 Sum_probs=119.5
Q ss_pred CccccCCCCCceeeeec-----eeeeeeeeeEEEE---EEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE---KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
++++..|+|||||++|| .+.+.||++..+. .++...+.+++|||+|+++|..+++.+++++|++|+|||+++
T Consensus 7 ~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~ 86 (191)
T cd01875 7 VVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIAS 86 (191)
T ss_pred EEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCC
Confidence 36789999999999976 5678899986554 233356899999999999999999999999999999999999
Q ss_pred hhhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---------CCCCCCce-eEEEEeeeccCCC
Q 030931 73 RERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLG---------LFDLKNRK-WHIQGTCALKGDG 141 (169)
Q Consensus 73 ~~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~---------~~~~~~~~-~~~~~~Sa~~~~g 141 (169)
+.+|+.+. .|...+.... ++.|+++||||+|+.+.....+...... .......+ ++|++|||++|+|
T Consensus 87 ~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~ 164 (191)
T cd01875 87 PSSYENVRHKWHPEVCHHC--PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDG 164 (191)
T ss_pred HHHHHHHHHHHHHHHHhhC--CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCC
Confidence 99999997 5877765432 5799999999999965422111111110 00112223 5799999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q 030931 142 LYEGLDWLASTLKEMR 157 (169)
Q Consensus 142 i~~~~~~l~~~~~~~~ 157 (169)
|+++|.++++.+..+.
T Consensus 165 v~e~f~~l~~~~~~~~ 180 (191)
T cd01875 165 VKEVFAEAVRAVLNPT 180 (191)
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999999887653
No 24
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=100.00 E-value=1.7e-31 Score=170.98 Aligned_cols=154 Identities=26% Similarity=0.488 Sum_probs=144.7
Q ss_pred ccccCCCCCceeeee-----ceeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhH
Q 030931 2 LRVKQPYCTSCTLVK-----FYLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERI 76 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~-----f~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~ 76 (169)
|++=|.||||||++. |.+...||+|++.+.+..+.+.+.+||.|||.+|+.+|..|+++++++++|+|+.+++..
T Consensus 25 lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~ 104 (186)
T KOG0075|consen 25 LVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKL 104 (186)
T ss_pred EEeeccCCcceEEEEEeeccchhhhcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccc
Confidence 456789999999994 578889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHh
Q 030931 77 GKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE 155 (169)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 155 (169)
...+..+..++..+...++|++++|||.|++++.+..++.+++++..+..+.+-+|.+|+++..||+-+.+|+.++-..
T Consensus 105 ~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~~~Wli~hsk~ 183 (186)
T KOG0075|consen 105 EASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDITLDWLIEHSKS 183 (186)
T ss_pred hhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHHHHHHHHHHHhhh
Confidence 9999999999998888899999999999999999999999999999999999999999999999999999999986543
No 25
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=5.2e-33 Score=190.16 Aligned_cols=151 Identities=14% Similarity=0.153 Sum_probs=120.2
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEE-EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR 73 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 73 (169)
+++.+|+|||||+++| .+.+.||++..+. .+.. ..+.+++|||+|++++..++..++++++++|+|||++++
T Consensus 7 vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~ 86 (172)
T cd04141 7 MLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDR 86 (172)
T ss_pred EECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCch
Confidence 6789999999999876 4667788885543 3333 457899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931 74 ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS 151 (169)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (169)
.+|+.+..|...+.+.....+.|+++|+||+|+.+.. +.++.. .+ .+..+++|++|||++|.||+++|++++.
T Consensus 87 ~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~-~~----a~~~~~~~~e~Sa~~~~~v~~~f~~l~~ 161 (172)
T cd04141 87 HSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGR-NL----AREFNCPFFETSAALRHYIDDAFHGLVR 161 (172)
T ss_pred hHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHH-HH----HHHhCCEEEEEecCCCCCHHHHHHHHHH
Confidence 9999999887766543334579999999999986432 222211 11 2334578999999999999999999999
Q ss_pred HHHhhh
Q 030931 152 TLKEMR 157 (169)
Q Consensus 152 ~~~~~~ 157 (169)
.+.+..
T Consensus 162 ~~~~~~ 167 (172)
T cd04141 162 EIRRKE 167 (172)
T ss_pred HHHHhc
Confidence 887654
No 26
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=3.1e-33 Score=179.19 Aligned_cols=151 Identities=17% Similarity=0.216 Sum_probs=125.6
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEE--ECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQ--YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
+++.+|.|||||+.+| +..|..|+|+++ .+++ ...++++|||++|+++|+.+...|+++.+++++|||+++
T Consensus 13 IigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn 92 (198)
T KOG0079|consen 13 IIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTN 92 (198)
T ss_pred eecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcc
Confidence 4668999999999986 788999999654 4444 467999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAST 152 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 152 (169)
.++|.++..|++++...+ +..|-++||||.|.++..-... ++ ...++...++++||+||+.++|++..|..|.++
T Consensus 93 ~ESF~Nv~rWLeei~~nc--dsv~~vLVGNK~d~~~RrvV~t-~d--Ar~~A~~mgie~FETSaKe~~NvE~mF~cit~q 167 (198)
T KOG0079|consen 93 GESFNNVKRWLEEIRNNC--DSVPKVLVGNKNDDPERRVVDT-ED--ARAFALQMGIELFETSAKENENVEAMFHCITKQ 167 (198)
T ss_pred hhhhHhHHHHHHHHHhcC--ccccceecccCCCCccceeeeh-HH--HHHHHHhcCchheehhhhhcccchHHHHHHHHH
Confidence 999999999999996544 6899999999999876532111 11 112234567789999999999999999999998
Q ss_pred HHhhh
Q 030931 153 LKEMR 157 (169)
Q Consensus 153 ~~~~~ 157 (169)
+.+.+
T Consensus 168 vl~~k 172 (198)
T KOG0079|consen 168 VLQAK 172 (198)
T ss_pred HHHHH
Confidence 87754
No 27
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.98 E-value=6.3e-32 Score=188.36 Aligned_cols=146 Identities=17% Similarity=0.210 Sum_probs=120.5
Q ss_pred cccCCCCCceeeeec-----eeeeeeeeeEEEEEEEE----CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931 3 RVKQPYCTSCTLVKF-----YLLFLLLVRFNVEKVQY----KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR 73 (169)
Q Consensus 3 ~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 73 (169)
++.+|+|||||+++| .+.+.||+|.++..... +.++++||||+|+++|..++..++++++++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 467899999999986 45678999877654332 578999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHH
Q 030931 74 ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM-TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAST 152 (169)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 152 (169)
.+|..+..|+.++.+.. .++|+++||||+|+.... ..++. . .....++.|++|||++|+||.++|++++..
T Consensus 81 ~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~-~-----~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~ 152 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDVKDRKVKAKSI-T-----FHRKKNLQYYDISAKSNYNFEKPFLWLARK 152 (200)
T ss_pred HHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCHHHH-H-----HHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999987643 589999999999985432 22211 1 123446789999999999999999999998
Q ss_pred HHhh
Q 030931 153 LKEM 156 (169)
Q Consensus 153 ~~~~ 156 (169)
+.+.
T Consensus 153 i~~~ 156 (200)
T smart00176 153 LIGD 156 (200)
T ss_pred HHhc
Confidence 8765
No 28
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=1.7e-32 Score=175.61 Aligned_cols=150 Identities=18% Similarity=0.289 Sum_probs=126.4
Q ss_pred ccccCCCCCceeeee-----ceeeeeeeeeEEEEEEEE----CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVK-----FYLLFLLLVRFNVEKVQY----KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~-----f~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
++++.-+||||++.| |.+.+..|+|+.+..-.. +.++++||||+|+|+++.+.-.++++|.++|++||+++
T Consensus 26 iiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmyDitN 105 (193)
T KOG0093|consen 26 IIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITN 105 (193)
T ss_pred EEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEEEecCC
Confidence 467889999999996 578999999987654222 56999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-----HhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-----PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD 147 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 147 (169)
.++|..+..|...+... ...+.|+++|+||||+.++.. ...+.+.++ +.|||+||+.+.|++++|+
T Consensus 106 eeSf~svqdw~tqIkty-sw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LG--------fefFEtSaK~NinVk~~Fe 176 (193)
T KOG0093|consen 106 EESFNSVQDWITQIKTY-SWDNAQVILVGNKCDMDSERVISHERGRQLADQLG--------FEFFETSAKENINVKQVFE 176 (193)
T ss_pred HHHHHHHHHHHHHheee-eccCceEEEEecccCCccceeeeHHHHHHHHHHhC--------hHHhhhcccccccHHHHHH
Confidence 99999999999998544 456899999999999976532 233444444 4699999999999999999
Q ss_pred HHHHHHHhhhccc
Q 030931 148 WLASTLKEMRAAG 160 (169)
Q Consensus 148 ~l~~~~~~~~~~~ 160 (169)
.++..+.++....
T Consensus 177 ~lv~~Ic~kmses 189 (193)
T KOG0093|consen 177 RLVDIICDKMSES 189 (193)
T ss_pred HHHHHHHHHhhhh
Confidence 9999999876543
No 29
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.98 E-value=1.2e-32 Score=195.39 Aligned_cols=158 Identities=13% Similarity=0.112 Sum_probs=121.2
Q ss_pred CccccCCCCCceeeeec-----eeeeeeeeeEEEEE-E--EECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK-V--QYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~-~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
++++..|+|||||+++| .+.+.||++..+.. + +...+.++||||+|+++|..+++.++++|+++|+|||+++
T Consensus 17 vvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~ 96 (232)
T cd04174 17 VLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISR 96 (232)
T ss_pred EEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCC
Confidence 36789999999999975 56788999866532 2 3357899999999999999999999999999999999999
Q ss_pred hhhHHHH-HHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---------HhHHHhhhCCCCCCCcee-EEEEeeeccCC-
Q 030931 73 RERIGKA-KQEFQAIIKDPFMLNSVILVFANKQDMKGAMT---------PMEVCEGLGLFDLKNRKW-HIQGTCALKGD- 140 (169)
Q Consensus 73 ~~~~~~~-~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~- 140 (169)
+++|+.+ ..|+..+.+.. ++.|+++||||+|+.+... ...+....+...++..++ .|+||||++|+
T Consensus 97 ~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~ 174 (232)
T cd04174 97 PETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAFTSEK 174 (232)
T ss_pred hHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCcCCc
Confidence 9999985 78998886533 5789999999999863210 011111111122234455 59999999998
Q ss_pred CHHHHHHHHHHHHHhhhccc
Q 030931 141 GLYEGLDWLASTLKEMRAAG 160 (169)
Q Consensus 141 gi~~~~~~l~~~~~~~~~~~ 160 (169)
||+++|..++..+.+...++
T Consensus 175 ~V~e~F~~~~~~~~~~~~~~ 194 (232)
T cd04174 175 SIHSIFRSASLLCLNKLSPP 194 (232)
T ss_pred CHHHHHHHHHHHHHHhcccc
Confidence 89999999999887754443
No 30
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.98 E-value=4.4e-33 Score=180.81 Aligned_cols=153 Identities=20% Similarity=0.226 Sum_probs=128.3
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEEE----EEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK----VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
|++..|+|||||+.|| .+....|+|+++.. ++...+++-||||+||++|+.+.+.||++|.++|+|||++.
T Consensus 16 lIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~ 95 (209)
T KOG0080|consen 16 LIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTS 95 (209)
T ss_pred EEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccc
Confidence 4668999999999987 45556679976543 44578999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAST 152 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 152 (169)
+++|..+..|+.++--....+++-.++||||+|.... +.+....++..+....+-++|+||++.+|+...|++++..
T Consensus 96 Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~---R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~FeelveK 172 (209)
T KOG0080|consen 96 RDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESE---RVVDREEGLKFARKHRCLFIECSAKTRENVQCCFEELVEK 172 (209)
T ss_pred hhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhc---ccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHHHHHHH
Confidence 9999999999999866666778999999999997532 3344444555556667789999999999999999999999
Q ss_pred HHhhh
Q 030931 153 LKEMR 157 (169)
Q Consensus 153 ~~~~~ 157 (169)
+.+-.
T Consensus 173 Ii~tp 177 (209)
T KOG0080|consen 173 IIETP 177 (209)
T ss_pred HhcCc
Confidence 88754
No 31
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.98 E-value=1.2e-31 Score=183.67 Aligned_cols=150 Identities=46% Similarity=0.814 Sum_probs=129.0
Q ss_pred ccccCCCCCceeeeece----eeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH
Q 030931 2 LRVKQPYCTSCTLVKFY----LLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG 77 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~----~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~ 77 (169)
+++.+++|||||++++. ..+.||++.++..+....+.+.+||+||++.+...+..+++++|++++|+|+++++++.
T Consensus 20 ~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~ 99 (174)
T cd04153 20 IVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLP 99 (174)
T ss_pred EECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHH
Confidence 56799999999999872 23578888888888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931 78 KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS 151 (169)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (169)
....++..+++.....+.|+++++||+|+.+..+.+++.+.++........++++++||++|+|++++|++|.+
T Consensus 100 ~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 100 LTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred HHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHHHHHHhc
Confidence 88888888876554567999999999999776666777777765544556778999999999999999999964
No 32
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.98 E-value=2.2e-31 Score=179.72 Aligned_cols=150 Identities=47% Similarity=0.855 Sum_probs=124.8
Q ss_pred ccccCCCCCceeeeece----eeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH
Q 030931 2 LRVKQPYCTSCTLVKFY----LLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG 77 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~----~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~ 77 (169)
|++.+++|||||++++. ..+.||++.+...+++.++.+++|||||++.+..++..+++.++++++|+|++++.++.
T Consensus 4 lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~ 83 (158)
T cd04151 4 ILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLG 83 (158)
T ss_pred EECCCCCCHHHHHHHHccCCCcCcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHH
Confidence 57899999999999872 24568888888788888999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931 78 KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS 151 (169)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (169)
....++..+++.....+.|+++++||+|+.+.....++...++.......+++++++||++|.|++++|+++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 84 TAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred HHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 77777776665444457999999999999765555666666654444445678999999999999999999875
No 33
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.98 E-value=1.1e-32 Score=189.76 Aligned_cols=152 Identities=14% Similarity=0.124 Sum_probs=117.6
Q ss_pred CccccCCCCCceeeeec-----eeeeeeeeeEEEE-EE--EECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE-KV--QYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~-~~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
++++..|+|||||+++| .+.+.||++..+. .+ +...+.+++|||+|+++|..+++.++++++++++|||+++
T Consensus 9 vvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~ 88 (182)
T cd04172 9 VVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISR 88 (182)
T ss_pred EEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCC
Confidence 36789999999999976 5778899986553 23 3356889999999999999999999999999999999999
Q ss_pred hhhHHHH-HHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---------HhHHHhhhCCCCCCCcee-EEEEeeeccCCC
Q 030931 73 RERIGKA-KQEFQAIIKDPFMLNSVILVFANKQDMKGAMT---------PMEVCEGLGLFDLKNRKW-HIQGTCALKGDG 141 (169)
Q Consensus 73 ~~~~~~~-~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g 141 (169)
+.+|+.+ ..|+..+.+.. ++.|+++||||+|+.+... ...+....+...++..++ +|+||||++|+|
T Consensus 89 ~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n 166 (182)
T cd04172 89 PETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 166 (182)
T ss_pred HHHHHHHHHHHHHHHHHHC--CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcCCCCC
Confidence 9999997 78988886543 5799999999999864210 001111111112234453 799999999998
Q ss_pred -HHHHHHHHHHHHH
Q 030931 142 -LYEGLDWLASTLK 154 (169)
Q Consensus 142 -i~~~~~~l~~~~~ 154 (169)
|.++|..++..+.
T Consensus 167 ~v~~~F~~~~~~~~ 180 (182)
T cd04172 167 SVRDIFHVATLACV 180 (182)
T ss_pred CHHHHHHHHHHHHh
Confidence 9999999998643
No 34
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=2.8e-31 Score=168.74 Aligned_cols=152 Identities=50% Similarity=0.872 Sum_probs=142.5
Q ss_pred cccCCCCCceeeeec----eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHH
Q 030931 3 RVKQPYCTSCTLVKF----YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGK 78 (169)
Q Consensus 3 ~~~~~~~Ktsll~~f----~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~ 78 (169)
++=+++||||++.++ +....||+|+++.++.++.+++++||++|+++.+..|.+||.+..++|||+|..++++++.
T Consensus 23 lGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~ee 102 (180)
T KOG0071|consen 23 LGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEE 102 (180)
T ss_pred EecccCCceehhhHHhcCCCcccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEEEeccchhhHHH
Confidence 446899999999987 5677899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHH
Q 030931 79 AKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 154 (169)
Q Consensus 79 ~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 154 (169)
.+..+..++.++.+.+.|+++.+||.|++++..++|+.+.+.+..+..+.|...++||.+|.|+.+.|.|+...+.
T Consensus 103 Ar~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~eglswlsnn~~ 178 (180)
T KOG0071|consen 103 ARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEGLSWLSNNLK 178 (180)
T ss_pred HHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeeccccccchhHHHHHHHHHhhcc
Confidence 9999999999888899999999999999999999999999999888888889999999999999999999987654
No 35
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=6.2e-32 Score=174.25 Aligned_cols=161 Identities=20% Similarity=0.202 Sum_probs=128.7
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEEE--EEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK--VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
+++..|+|||+|+++| .++...|+|+.+.. ++. +.++++||||+||++|++....|+++|.+.++|||+++
T Consensus 14 ~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~Ts 93 (214)
T KOG0086|consen 14 VIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITS 93 (214)
T ss_pred EeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEEEeccc
Confidence 5678999999999976 67778899987744 344 67999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAST 152 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 152 (169)
+++|+.+..|+.+..- ...+++-++++|||.|+.++... .-.......+.....+.|+||++|+|+++.|-...+.
T Consensus 94 rdsfnaLtnWL~DaR~-lAs~nIvviL~GnKkDL~~~R~V---tflEAs~FaqEnel~flETSa~TGeNVEEaFl~c~~t 169 (214)
T KOG0086|consen 94 RDSFNALTNWLTDART-LASPNIVVILCGNKKDLDPEREV---TFLEASRFAQENELMFLETSALTGENVEEAFLKCART 169 (214)
T ss_pred hhhHHHHHHHHHHHHh-hCCCcEEEEEeCChhhcChhhhh---hHHHHHhhhcccceeeeeecccccccHHHHHHHHHHH
Confidence 9999999999999843 34468999999999999765332 1111112224445568999999999999999999998
Q ss_pred HHhhhccccccccc
Q 030931 153 LKEMRAAGYSSVGT 166 (169)
Q Consensus 153 ~~~~~~~~~~~~~~ 166 (169)
+..+...+...+.+
T Consensus 170 Il~kIE~GElDPer 183 (214)
T KOG0086|consen 170 ILNKIESGELDPER 183 (214)
T ss_pred HHHHHhhcCCCHHH
Confidence 88876555444333
No 36
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=3.4e-31 Score=185.40 Aligned_cols=153 Identities=16% Similarity=0.182 Sum_probs=121.8
Q ss_pred CccccCCCCCceeeeec-----eeeeeeeeeEEEE--EEEE---CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEEC
Q 030931 1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE--KVQY---KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDS 70 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~--~~~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~ 70 (169)
++++.+|+|||||+++| .+.+.||++.++. .+.. ..+.+++|||+|++++..++..++++++++|+|||+
T Consensus 4 vivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~ 83 (201)
T cd04107 4 LVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDV 83 (201)
T ss_pred EEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEEC
Confidence 36789999999999986 4567899986543 3443 468899999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHhcCC---CCCCCeEEEEEeCCCCCC--CCCHhHHHhhhCCCCCCCce-eEEEEeeeccCCCHHH
Q 030931 71 LDRERIGKAKQEFQAIIKDP---FMLNSVILVFANKQDMKG--AMTPMEVCEGLGLFDLKNRK-WHIQGTCALKGDGLYE 144 (169)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~---~~~~~piivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~ 144 (169)
+++++|+.+..|+..+.... ...++|+++|+||+|+.+ ....+++.... ...+ .+|+++||++|.|+++
T Consensus 84 t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~e~Sak~~~~v~e 158 (201)
T cd04107 84 TRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFC-----KENGFIGWFETSAKEGINIEE 158 (201)
T ss_pred CCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHH-----HHcCCceEEEEeCCCCCCHHH
Confidence 99999999999988775421 235789999999999963 33344433322 1222 4699999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 030931 145 GLDWLASTLKEMRA 158 (169)
Q Consensus 145 ~~~~l~~~~~~~~~ 158 (169)
+|+++++.+.+...
T Consensus 159 ~f~~l~~~l~~~~~ 172 (201)
T cd04107 159 AMRFLVKNILANDK 172 (201)
T ss_pred HHHHHHHHHHHhch
Confidence 99999998887643
No 37
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.97 E-value=6.8e-32 Score=190.50 Aligned_cols=155 Identities=15% Similarity=0.148 Sum_probs=121.2
Q ss_pred CccccCCCCCceeeeece----eeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhH
Q 030931 1 MLRVKQPYCTSCTLVKFY----LLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERI 76 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f~----~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~ 76 (169)
++++.+++|||||+++|. ..+.||++..+.....+.+.+.+|||+|++++..++..++++++++|+|||++++++|
T Consensus 4 vivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf 83 (220)
T cd04126 4 VLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSL 83 (220)
T ss_pred EEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHH
Confidence 367899999999999872 3467888877776677889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC---------------------CCHhHH---HhhhCC------CCCCC
Q 030931 77 GKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA---------------------MTPMEV---CEGLGL------FDLKN 126 (169)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~---------------------~~~~~~---~~~~~~------~~~~~ 126 (169)
+.+..|+..+.+. ...+.|+++|+||+|+.+. +..++. .+..+. .....
T Consensus 84 ~~l~~~~~~l~~~-~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~ 162 (220)
T cd04126 84 EELEDRFLGLTDT-ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPA 162 (220)
T ss_pred HHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcccccccccccc
Confidence 9999988887653 2357999999999998641 111211 111110 00011
Q ss_pred ceeEEEEeeeccCCCHHHHHHHHHHHHHhh
Q 030931 127 RKWHIQGTCALKGDGLYEGLDWLASTLKEM 156 (169)
Q Consensus 127 ~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (169)
..++|+||||++|.||.++|..++..+.+.
T Consensus 163 ~~~~~~E~SA~tg~~V~elf~~i~~~~~~~ 192 (220)
T cd04126 163 AEKMCFETSAKTGYNVDELFEYLFNLVLPL 192 (220)
T ss_pred ccceEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence 226799999999999999999999877764
No 38
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.5e-32 Score=184.09 Aligned_cols=153 Identities=20% Similarity=0.244 Sum_probs=127.7
Q ss_pred CccccCCCCCceeeeec-----eeeeeeeeeEEEEE----EEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931 1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK----VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL 71 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~ 71 (169)
+|++..|.|||-|+-|| ..+..+|+|+.+.+ ++.+.++.+||||+||++|+.....|+++|.++++|||++
T Consensus 18 VliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDIT 97 (222)
T KOG0087|consen 18 VLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIT 97 (222)
T ss_pred EEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEEEEech
Confidence 47889999999999987 56778999987765 3447899999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931 72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS 151 (169)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (169)
.+.+|+.+..|+.++..+.. +++++++||||+||... +.+...-+...++..+..++++||.+..|+++.|..++.
T Consensus 98 r~~Tfenv~rWL~ELRdhad-~nivimLvGNK~DL~~l---raV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~~l~ 173 (222)
T KOG0087|consen 98 RRQTFENVERWLKELRDHAD-SNIVIMLVGNKSDLNHL---RAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFERVLT 173 (222)
T ss_pred hHHHHHHHHHHHHHHHhcCC-CCeEEEEeecchhhhhc---cccchhhhHhHHHhcCceEEEecccccccHHHHHHHHHH
Confidence 99999999999999976543 58999999999999652 222222222333455667999999999999999999998
Q ss_pred HHHhhh
Q 030931 152 TLKEMR 157 (169)
Q Consensus 152 ~~~~~~ 157 (169)
.+....
T Consensus 174 ~I~~~v 179 (222)
T KOG0087|consen 174 EIYKIV 179 (222)
T ss_pred HHHHHH
Confidence 887753
No 39
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.97 E-value=2.1e-31 Score=188.61 Aligned_cols=148 Identities=16% Similarity=0.189 Sum_probs=122.2
Q ss_pred CccccCCCCCceeeeec-----eeeeeeeeeEEEEEEEE----CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931 1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEKVQY----KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL 71 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~ 71 (169)
++++.+|+|||||+++| ...+.||++.++....+ +.+++++|||+|++++..++..++++++++|+|||++
T Consensus 17 ~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~ 96 (219)
T PLN03071 17 VIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT 96 (219)
T ss_pred EEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCC
Confidence 46789999999999976 56788999877655433 4689999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931 72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM-TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 150 (169)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 150 (169)
++.+|..+..|+..+.+.. ++.|+++||||+|+.+.. ..+++ .+ ....+++|++|||++|.|++++|.+++
T Consensus 97 ~~~s~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~--~~----~~~~~~~~~e~SAk~~~~i~~~f~~l~ 168 (219)
T PLN03071 97 ARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV--TF----HRKKNLQYYEISAKSNYNFEKPFLYLA 168 (219)
T ss_pred CHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhhhhccCCHHHH--HH----HHhcCCEEEEcCCCCCCCHHHHHHHHH
Confidence 9999999999999886543 579999999999986432 22222 11 123456799999999999999999999
Q ss_pred HHHHhh
Q 030931 151 STLKEM 156 (169)
Q Consensus 151 ~~~~~~ 156 (169)
+.+.+.
T Consensus 169 ~~~~~~ 174 (219)
T PLN03071 169 RKLAGD 174 (219)
T ss_pred HHHHcC
Confidence 988764
No 40
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.97 E-value=1.9e-31 Score=183.89 Aligned_cols=154 Identities=12% Similarity=0.173 Sum_probs=119.6
Q ss_pred CccccCCCCCceeeeec-----eeeeeeeeeEEEE--EEEEC--CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931 1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE--KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL 71 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~ 71 (169)
++++..|+|||||++|| .+.+.||++.++. .+..+ .+.+++|||+|++++..++..++++++++++|||++
T Consensus 4 ~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t 83 (182)
T cd04128 4 GLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLT 83 (182)
T ss_pred EEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECc
Confidence 46789999999999976 5678899997663 44443 588999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHH
Q 030931 72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP---MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDW 148 (169)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 148 (169)
++++|+.+..|+..+.+... ...| ++||||+|+...... +.+.+ ......+..++++++|||++|.|++++|++
T Consensus 84 ~~~s~~~i~~~~~~~~~~~~-~~~p-ilVgnK~Dl~~~~~~~~~~~~~~-~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~ 160 (182)
T cd04128 84 RKSTLNSIKEWYRQARGFNK-TAIP-ILVGTKYDLFADLPPEEQEEITK-QARKYAKAMKAPLIFCSTSHSINVQKIFKI 160 (182)
T ss_pred CHHHHHHHHHHHHHHHHhCC-CCCE-EEEEEchhccccccchhhhhhHH-HHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999998866432 3566 678999999532111 11111 111112334467999999999999999999
Q ss_pred HHHHHHhhh
Q 030931 149 LASTLKEMR 157 (169)
Q Consensus 149 l~~~~~~~~ 157 (169)
+.+.+.+.+
T Consensus 161 l~~~l~~~~ 169 (182)
T cd04128 161 VLAKAFDLP 169 (182)
T ss_pred HHHHHHhcC
Confidence 999887644
No 41
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.97 E-value=4.8e-31 Score=179.46 Aligned_cols=148 Identities=18% Similarity=0.228 Sum_probs=121.1
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEEEEEE----CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEKVQY----KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
+++.+|+|||||++++ ...+.||++..+..... +.+.+++|||+|++.+..++..+++.+|++|+|||+++
T Consensus 5 vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 84 (166)
T cd00877 5 LVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTS 84 (166)
T ss_pred EECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEEECCC
Confidence 6789999999999986 45678898877655433 56899999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAST 152 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 152 (169)
++++..+..|+..+.+.. .+.|+++|+||+|+.+.....+... + .+...++++++||++|+|++++|+++++.
T Consensus 85 ~~s~~~~~~~~~~i~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~-~----~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 157 (166)
T cd00877 85 RVTYKNVPNWHRDLVRVC--GNIPIVLCGNKVDIKDRKVKAKQIT-F----HRKKNLQYYEISAKSNYNFEKPFLWLARK 157 (166)
T ss_pred HHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhcccccCCHHHHH-H----HHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence 999999999999986644 3899999999999964332222111 1 12345679999999999999999999998
Q ss_pred HHhh
Q 030931 153 LKEM 156 (169)
Q Consensus 153 ~~~~ 156 (169)
+.+.
T Consensus 158 ~~~~ 161 (166)
T cd00877 158 LLGN 161 (166)
T ss_pred HHhc
Confidence 8753
No 42
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=1.7e-32 Score=173.14 Aligned_cols=148 Identities=20% Similarity=0.324 Sum_probs=126.1
Q ss_pred CccccCCCCCceeeeec------eeeeeeeeeEEEEE----EEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEEC
Q 030931 1 MLRVKQPYCTSCTLVKF------YLLFLLLVRFNVEK----VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDS 70 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f------~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~ 70 (169)
||++..+.|||+|+-|| .....+|+|++++. ++..++++++|||+||++|++....|++.||+++++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 89999999999999998 56788999988765 344789999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC-----CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHH
Q 030931 71 LDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA-----MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG 145 (169)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 145 (169)
.+..+|++.+.|+.++.+.. ...+.+.++|||+|+..+ .+.+.+.+.+ ++|++++||++|.|++-.
T Consensus 81 ankasfdn~~~wlsei~ey~-k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y--------~ipfmetsaktg~nvd~a 151 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYA-KEAVALMLLGNKCDLAHERAVKRDDGEKLAEAY--------GIPFMETSAKTGFNVDLA 151 (192)
T ss_pred ccchhHHHHHHHHHHHHHHH-HhhHhHhhhccccccchhhccccchHHHHHHHH--------CCCceeccccccccHhHH
Confidence 99999999999999986533 357889999999998542 1234444444 456999999999999999
Q ss_pred HHHHHHHHHhhh
Q 030931 146 LDWLASTLKEMR 157 (169)
Q Consensus 146 ~~~l~~~~~~~~ 157 (169)
|-.+.+.+.+.+
T Consensus 152 f~~ia~~l~k~~ 163 (192)
T KOG0083|consen 152 FLAIAEELKKLK 163 (192)
T ss_pred HHHHHHHHHHhc
Confidence 999999888764
No 43
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=5.3e-32 Score=185.98 Aligned_cols=152 Identities=13% Similarity=0.110 Sum_probs=116.2
Q ss_pred CccccCCCCCceeeeec-----eeeeeeeeeEEEE-EE--EECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE-KV--QYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~-~~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
++++..|+|||||+++| .+.+.||++..+. .+ +...+++++|||+|++++..+++.++++++++|+|||+++
T Consensus 5 v~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~ 84 (178)
T cd04131 5 VVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISR 84 (178)
T ss_pred EEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCC
Confidence 46789999999999976 5677889886553 23 3356889999999999999999999999999999999999
Q ss_pred hhhHHHH-HHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---------HhHHHhhhCCCCCCCcee-EEEEeeeccCCC
Q 030931 73 RERIGKA-KQEFQAIIKDPFMLNSVILVFANKQDMKGAMT---------PMEVCEGLGLFDLKNRKW-HIQGTCALKGDG 141 (169)
Q Consensus 73 ~~~~~~~-~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g 141 (169)
+++|+.+ ..|+..+.+.. ++.|+++||||+|+.+... ...+....+....+..++ +|+||||++|+|
T Consensus 85 ~~Sf~~~~~~w~~~i~~~~--~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~~ 162 (178)
T cd04131 85 PETLDSVLKKWRGEIQEFC--PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTSEK 162 (178)
T ss_pred hhhHHHHHHHHHHHHHHHC--CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcCCc
Confidence 9999996 78988886543 5799999999999854200 000111111111233444 799999999995
Q ss_pred -HHHHHHHHHHHHH
Q 030931 142 -LYEGLDWLASTLK 154 (169)
Q Consensus 142 -i~~~~~~l~~~~~ 154 (169)
|+++|..+++...
T Consensus 163 ~v~~~F~~~~~~~~ 176 (178)
T cd04131 163 SVRDIFHVATMACL 176 (178)
T ss_pred CHHHHHHHHHHHHh
Confidence 9999999998543
No 44
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.97 E-value=1.8e-31 Score=181.42 Aligned_cols=148 Identities=18% Similarity=0.251 Sum_probs=118.6
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEEE--EEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK--VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
+++.+|+|||||+++| .+.+.||++.++.. +.. ..+++++|||||++++...+..++++++++|+|||+++
T Consensus 7 iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~ 86 (166)
T cd04122 7 IIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITR 86 (166)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCC
Confidence 5679999999999976 45667787765532 333 46789999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 150 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 150 (169)
+++|+.+..|+..+.... .++.|+++|+||+|+.+.. +.++.... .+..+++++++||++|.|+.++|.+++
T Consensus 87 ~~s~~~~~~~~~~~~~~~-~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~e~Sa~~~~~i~e~f~~l~ 160 (166)
T cd04122 87 RSTYNHLSSWLTDARNLT-NPNTVIFLIGNKADLEAQRDVTYEEAKQF-----ADENGLLFLECSAKTGENVEDAFLETA 160 (166)
T ss_pred HHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCcCHHHHHHH-----HHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 999999999998875532 3578999999999996543 22332221 123456899999999999999999999
Q ss_pred HHHHh
Q 030931 151 STLKE 155 (169)
Q Consensus 151 ~~~~~ 155 (169)
..+.+
T Consensus 161 ~~~~~ 165 (166)
T cd04122 161 KKIYQ 165 (166)
T ss_pred HHHhh
Confidence 87754
No 45
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.97 E-value=1.1e-30 Score=177.51 Aligned_cols=150 Identities=29% Similarity=0.521 Sum_probs=125.9
Q ss_pred ccccCCCCCceeeeece-----------eeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEEC
Q 030931 2 LRVKQPYCTSCTLVKFY-----------LLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDS 70 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~-----------~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~ 70 (169)
+++.+|+|||||++++. ..+.||++.++..+.+++..+.+|||||++.+..++..+++.++++++|+|+
T Consensus 4 ~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~ 83 (167)
T cd04160 4 ILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDS 83 (167)
T ss_pred EEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEEC
Confidence 57899999999999862 3457788888888888999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCC--CCCceeEEEEeeeccCCCHHHHHHH
Q 030931 71 LDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFD--LKNRKWHIQGTCALKGDGLYEGLDW 148 (169)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~gi~~~~~~ 148 (169)
++.+++.....|+..+++.....+.|+++++||+|+.+.....++...+.... .....++++++||++|+|++++++|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~ 163 (167)
T cd04160 84 TDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEW 163 (167)
T ss_pred chHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHH
Confidence 99989999988998887755556899999999999977665555555444221 2335678999999999999999999
Q ss_pred HHH
Q 030931 149 LAS 151 (169)
Q Consensus 149 l~~ 151 (169)
+.+
T Consensus 164 l~~ 166 (167)
T cd04160 164 LVE 166 (167)
T ss_pred Hhc
Confidence 975
No 46
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.97 E-value=1.6e-31 Score=183.85 Aligned_cols=151 Identities=17% Similarity=0.307 Sum_probs=120.5
Q ss_pred CccccCCCCCceeeeec-----eeeeeeeeeEEEEE--EEE------------CCEEEEEEEcCCCCCchhhHHhhccCC
Q 030931 1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK--VQY------------KNVIFTVWDVGGQEKLRPLWRHYFNNT 61 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~--~~~------------~~~~~~i~D~~G~~~~~~~~~~~~~~~ 61 (169)
++++.+|+|||||+++| .+.+.||++.++.. +.+ ..+.+++|||||++++..++..+++++
T Consensus 8 ~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 87 (180)
T cd04127 8 LALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTAFFRDA 87 (180)
T ss_pred EEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHHHhCCC
Confidence 46789999999999975 56778888865533 332 248899999999999999999999999
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccC
Q 030931 62 DGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKG 139 (169)
Q Consensus 62 ~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 139 (169)
+++++|||++++++|..+..|+..+......++.|+++|+||+|+.+.. ..++. ..+. +..+++++++||++|
T Consensus 88 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~-~~~~----~~~~~~~~e~Sak~~ 162 (180)
T cd04127 88 MGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQA-KALA----DKYGIPYFETSAATG 162 (180)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHH-HHHH----HHcCCeEEEEeCCCC
Confidence 9999999999999999999999988664444578999999999996532 22222 1121 223457999999999
Q ss_pred CCHHHHHHHHHHHHHhh
Q 030931 140 DGLYEGLDWLASTLKEM 156 (169)
Q Consensus 140 ~gi~~~~~~l~~~~~~~ 156 (169)
.|++++|+++++.+.++
T Consensus 163 ~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 163 TNVEKAVERLLDLVMKR 179 (180)
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999877643
No 47
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=1.3e-31 Score=186.01 Aligned_cols=158 Identities=15% Similarity=0.154 Sum_probs=122.2
Q ss_pred CccccCCCCCceeeeec-----eeeeeeeeeEEEE-EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
++++.+|+|||||+++| .+.+.||++..+. .+.. ..+.+++|||+|++++..++..+++++|++|+|||+++
T Consensus 3 ~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~ 82 (190)
T cd04144 3 VVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITS 82 (190)
T ss_pred EEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCC
Confidence 36789999999999875 4567788874432 2333 45679999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCC--CCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPF--MLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDW 148 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~--~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 148 (169)
.++|+.+..|+..+..... ..+.|+++|+||+|+.... ...+.. .+ ....+++++++||++|.|++++|++
T Consensus 83 ~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~-~~----~~~~~~~~~e~SAk~~~~v~~l~~~ 157 (190)
T cd04144 83 RSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGA-AL----ARRLGCEFIEASAKTNVNVERAFYT 157 (190)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHH-HH----HHHhCCEEEEecCCCCCCHHHHHHH
Confidence 9999999999888765322 2578999999999986422 222211 11 1223457999999999999999999
Q ss_pred HHHHHHhhhcccccc
Q 030931 149 LASTLKEMRAAGYSS 163 (169)
Q Consensus 149 l~~~~~~~~~~~~~~ 163 (169)
+++.+.++...+..+
T Consensus 158 l~~~l~~~~~~~~~~ 172 (190)
T cd04144 158 LVRALRQQRQGGQGP 172 (190)
T ss_pred HHHHHHHhhcccCCC
Confidence 999888776655444
No 48
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.97 E-value=1.2e-30 Score=176.23 Aligned_cols=151 Identities=40% Similarity=0.660 Sum_probs=124.3
Q ss_pred CccccCCCCCceeeeece----eeeeeeeeEEEEEEEE-CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhh
Q 030931 1 MLRVKQPYCTSCTLVKFY----LLFLLLVRFNVEKVQY-KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRER 75 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f~----~~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~ 75 (169)
++++.+|+|||||+++|. ..+.||.++++..+.. +.+.+.+||+||++.+...+..+++.++++++|+|+++..+
T Consensus 3 ~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~ 82 (160)
T cd04156 3 LLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEAR 82 (160)
T ss_pred EEEcCCCCCHHHHHHHHhcCCcccccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHH
Confidence 367899999999999873 2346888877766665 46899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCC-CCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931 76 IGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDL-KNRKWHIQGTCALKGDGLYEGLDWLAS 151 (169)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (169)
+.....|+..+++.....+.|+++|+||+|+.+....+++...+..... ...++++++|||++|+|++++|+++..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 83 LDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred HHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 9999999988877554468999999999999765566667665543222 335678999999999999999999864
No 49
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.97 E-value=2.6e-31 Score=181.44 Aligned_cols=154 Identities=16% Similarity=0.242 Sum_probs=119.3
Q ss_pred CccccCCCCCceeeeec-----eeeeeeeeeEEEE--EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931 1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL 71 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~ 71 (169)
++++.+|+|||||+++| .+.+.||++..+. .+.. ..+++++|||||++++..++..+++++|++++|||++
T Consensus 4 ~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~ 83 (170)
T cd04108 4 IVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLT 83 (170)
T ss_pred EEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECc
Confidence 36789999999999976 5677899986654 3333 3578999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931 72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS 151 (169)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (169)
+++++..+..|+.++++.....+.|+++|+||+|+.+..... .............+.+++++||++|.|++++|+.+..
T Consensus 84 ~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~~ 162 (170)
T cd04108 84 DVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYA-LMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVAA 162 (170)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCcccccc-ccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 999999999999998764433468899999999985432211 0000000011223457999999999999999999998
Q ss_pred HHHh
Q 030931 152 TLKE 155 (169)
Q Consensus 152 ~~~~ 155 (169)
.+.+
T Consensus 163 ~~~~ 166 (170)
T cd04108 163 LTFE 166 (170)
T ss_pred HHHH
Confidence 8754
No 50
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=7.3e-32 Score=173.33 Aligned_cols=152 Identities=18% Similarity=0.202 Sum_probs=123.1
Q ss_pred CccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEE--ECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931 1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQ--YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL 71 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~ 71 (169)
+|.++.|.|||+|++|| ++....|+|+.+ .+++ .++++++||||+||++|++....|++.|+++|+|||++
T Consensus 11 vlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilvydis 90 (213)
T KOG0095|consen 11 VLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDIS 90 (213)
T ss_pred EEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecc
Confidence 35679999999999997 567778888654 4444 47899999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931 72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS 151 (169)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (169)
..++|+-+.+|+.++-... ...+..++||||.|+.+. +++....+....+.....|+++||+.-.|++.+|..+..
T Consensus 91 cqpsfdclpewlreie~ya-n~kvlkilvgnk~d~~dr---revp~qigeefs~~qdmyfletsakea~nve~lf~~~a~ 166 (213)
T KOG0095|consen 91 CQPSFDCLPEWLREIEQYA-NNKVLKILVGNKIDLADR---REVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDLAC 166 (213)
T ss_pred cCcchhhhHHHHHHHHHHh-hcceEEEeeccccchhhh---hhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHHHH
Confidence 9999999999999985533 346888999999999765 334443333333344456899999999999999999887
Q ss_pred HHHhh
Q 030931 152 TLKEM 156 (169)
Q Consensus 152 ~~~~~ 156 (169)
.+...
T Consensus 167 rli~~ 171 (213)
T KOG0095|consen 167 RLISE 171 (213)
T ss_pred HHHHH
Confidence 66553
No 51
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.97 E-value=2.3e-31 Score=182.47 Aligned_cols=148 Identities=16% Similarity=0.157 Sum_probs=114.7
Q ss_pred CccccCCCCCceeeeec-----eeeeeeeeeEEEE-EEEEC--CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE-KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
++++.+|+|||||+++| .+.+.||++..+. .+..+ .+++++|||+|++++..++..++++++++|+|||+++
T Consensus 5 ~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~ 84 (175)
T cd01874 5 VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVS 84 (175)
T ss_pred EEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEECCC
Confidence 36789999999999976 4677899986654 34444 4889999999999999999999999999999999999
Q ss_pred hhhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCC------------CCCCCce-eEEEEeeecc
Q 030931 73 RERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGL------------FDLKNRK-WHIQGTCALK 138 (169)
Q Consensus 73 ~~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~------------~~~~~~~-~~~~~~Sa~~ 138 (169)
+++|+.+. .|+..+.... ++.|+++|+||+|+.+... ..+.+.. ......+ +.|++|||++
T Consensus 85 ~~s~~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~---~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t 159 (175)
T cd01874 85 PSSFENVKEKWVPEITHHC--PKTPFLLVGTQIDLRDDPS---TIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT 159 (175)
T ss_pred HHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhChh---hHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence 99999997 5877775432 5799999999999854311 1111110 0111222 5799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 030931 139 GDGLYEGLDWLASTL 153 (169)
Q Consensus 139 ~~gi~~~~~~l~~~~ 153 (169)
|.|++++|+.++.++
T Consensus 160 g~~v~~~f~~~~~~~ 174 (175)
T cd01874 160 QKGLKNVFDEAILAA 174 (175)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998753
No 52
>PTZ00369 Ras-like protein; Provisional
Probab=99.97 E-value=1.8e-31 Score=185.13 Aligned_cols=152 Identities=14% Similarity=0.135 Sum_probs=120.9
Q ss_pred CccccCCCCCceeeeec-----eeeeeeeeeEEEE---EEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE---KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
++++.+|+|||||+++| ...+.||.+..+. .++.+.+.+++|||||++++..++..+++.++++++|||+++
T Consensus 9 ~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~ 88 (189)
T PTZ00369 9 VVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITS 88 (189)
T ss_pred EEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCC
Confidence 36789999999999976 3466688775543 234456789999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 150 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 150 (169)
+++|+.+..|+..+.+.....+.|+++|+||+|+.+.. +..+... + ....+++++++||++|.|++++|.+++
T Consensus 89 ~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~-~----~~~~~~~~~e~Sak~~~gi~~~~~~l~ 163 (189)
T PTZ00369 89 RSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQE-L----AKSFGIPFLETSAKQRVNVDEAFYELV 163 (189)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHH-H----HHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999988765444589999999999986432 2222111 1 122345799999999999999999999
Q ss_pred HHHHhhh
Q 030931 151 STLKEMR 157 (169)
Q Consensus 151 ~~~~~~~ 157 (169)
+.+.+..
T Consensus 164 ~~l~~~~ 170 (189)
T PTZ00369 164 REIRKYL 170 (189)
T ss_pred HHHHHHh
Confidence 8887653
No 53
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.97 E-value=1.8e-30 Score=179.42 Aligned_cols=151 Identities=26% Similarity=0.428 Sum_probs=129.7
Q ss_pred ccccCCCCCceeeeecee----eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH
Q 030931 2 LRVKQPYCTSCTLVKFYL----LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG 77 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~----~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~ 77 (169)
+++.+|+|||||++++.. .+.||.+.....+..+++++.+||+||+++++.+|..++++++++++|+|+++++++.
T Consensus 22 ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~ 101 (184)
T smart00178 22 FLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFA 101 (184)
T ss_pred EECCCCCCHHHHHHHHhcCCCcccCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHH
Confidence 567999999999998843 3467888777778888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCC-------CceeEEEEeeeccCCCHHHHHHHHH
Q 030931 78 KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLK-------NRKWHIQGTCALKGDGLYEGLDWLA 150 (169)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~Sa~~~~gi~~~~~~l~ 150 (169)
....++..+++.....+.|+++++||+|+....+.+++.+.+++.... .+.+.+++|||++|.|++++++|+.
T Consensus 102 ~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~ 181 (184)
T smart00178 102 ESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLS 181 (184)
T ss_pred HHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHHH
Confidence 998888888765445689999999999998777888888888754321 2567799999999999999999998
Q ss_pred HH
Q 030931 151 ST 152 (169)
Q Consensus 151 ~~ 152 (169)
..
T Consensus 182 ~~ 183 (184)
T smart00178 182 QY 183 (184)
T ss_pred hh
Confidence 64
No 54
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.97 E-value=3.1e-30 Score=178.09 Aligned_cols=156 Identities=39% Similarity=0.637 Sum_probs=124.0
Q ss_pred ccccCCCCCceeeeecee----eeeeeeeEEEEEEEE-----CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVKFYL----LFLLLVRFNVEKVQY-----KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~----~~~~t~~~~~~~~~~-----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
+++.+|+|||||++++.. .+.||.+++...... ..+.+++|||||++++..+|..+++.++++++|+|+++
T Consensus 8 ~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~ 87 (183)
T cd04152 8 MLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVD 87 (183)
T ss_pred EECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCC
Confidence 568999999999998722 235777765544333 56899999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCC-CCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDL-KNRKWHIQGTCALKGDGLYEGLDWLAS 151 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (169)
..++..+..|+..+.+.....+.|+++|+||+|+.+....+++...+..... ....++++++||++|+|++++|+++.+
T Consensus 88 ~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~ 167 (183)
T cd04152 88 VERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLYE 167 (183)
T ss_pred HHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHHH
Confidence 9999998888888776444457999999999999765555555544443222 223467899999999999999999999
Q ss_pred HHHhhh
Q 030931 152 TLKEMR 157 (169)
Q Consensus 152 ~~~~~~ 157 (169)
.+.+..
T Consensus 168 ~l~~~~ 173 (183)
T cd04152 168 MILKRR 173 (183)
T ss_pred HHHHHH
Confidence 887654
No 55
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.97 E-value=3e-30 Score=174.00 Aligned_cols=150 Identities=49% Similarity=0.853 Sum_probs=130.1
Q ss_pred ccccCCCCCceeeeec----eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH
Q 030931 2 LRVKQPYCTSCTLVKF----YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG 77 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f----~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~ 77 (169)
+++.+|+|||||++++ ...+.+|.+.+...+.+..+.+.+||+||++.+...+..+++.++++++|||+++++++.
T Consensus 4 iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~ 83 (158)
T cd00878 4 ILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIE 83 (158)
T ss_pred EEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHH
Confidence 5778999999999987 346778888888888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931 78 KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS 151 (169)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (169)
....|+..+.......+.|+++++||+|+......+++...++........++++++||++|.|++++|++|..
T Consensus 84 ~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 84 EAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred HHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 99999888877554568999999999999876666777776665433455678999999999999999999875
No 56
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.97 E-value=3.2e-31 Score=179.43 Aligned_cols=148 Identities=14% Similarity=0.170 Sum_probs=115.6
Q ss_pred CccccCCCCCceeeeec-----eeeeeeeeeEEE-EEEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNV-EKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~-~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
++++.+|+|||||+++| .+.+.||.+..+ ..+.. ..+.+++|||||++++..++..++++++++++|||+++
T Consensus 5 ~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~ 84 (163)
T cd04136 5 VVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITS 84 (163)
T ss_pred EEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEECCC
Confidence 36789999999999976 355667776322 23433 45778999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 150 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 150 (169)
+.+|+.+..|+..+.+.....+.|+++|+||+|+.+.. ..++. ..+. ...+.+++++||++|.|+.++|++++
T Consensus 85 ~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~----~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04136 85 QSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEG-QALA----RQWGCPFYETSAKSKINVDEVFADLV 159 (163)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHH-HHHH----HHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 99999999999888765444689999999999986432 22111 1111 12236799999999999999999998
Q ss_pred HHH
Q 030931 151 STL 153 (169)
Q Consensus 151 ~~~ 153 (169)
+.+
T Consensus 160 ~~~ 162 (163)
T cd04136 160 RQI 162 (163)
T ss_pred Hhc
Confidence 754
No 57
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.97 E-value=2.4e-31 Score=184.48 Aligned_cols=155 Identities=16% Similarity=0.159 Sum_probs=118.3
Q ss_pred CccccCCCCCceeeeec-----eeeeeeeeeEEEEE-E--EECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK-V--QYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~-~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
++++.+|+|||||+++| .+.+.||++..+.. + +...+.+++|||+|++.+..++..++++++++|+|||+++
T Consensus 4 vivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~ 83 (189)
T cd04134 4 VVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDS 83 (189)
T ss_pred EEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEECCC
Confidence 36789999999999986 45567888765532 2 2245889999999999999999999999999999999999
Q ss_pred hhhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHh---------hhCCCCCCC-ceeEEEEeeeccCCC
Q 030931 73 RERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCE---------GLGLFDLKN-RKWHIQGTCALKGDG 141 (169)
Q Consensus 73 ~~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~---------~~~~~~~~~-~~~~~~~~Sa~~~~g 141 (169)
+++|+.+. .|+..+.... ++.|+++|+||+|+.+.....+... ..+...... ..++|++|||++|.|
T Consensus 84 ~~sf~~~~~~~~~~i~~~~--~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~ 161 (189)
T cd04134 84 PDSLENVESKWLGEIREHC--PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNRG 161 (189)
T ss_pred HHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCC
Confidence 99999886 5888876532 5799999999999975432221110 001111112 226799999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q 030931 142 LYEGLDWLASTLKEMR 157 (169)
Q Consensus 142 i~~~~~~l~~~~~~~~ 157 (169)
++++|+++.+.+....
T Consensus 162 v~e~f~~l~~~~~~~~ 177 (189)
T cd04134 162 VNEAFTEAARVALNVR 177 (189)
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999999887654
No 58
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.97 E-value=4.3e-31 Score=179.19 Aligned_cols=148 Identities=14% Similarity=0.150 Sum_probs=117.6
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEE-EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR 73 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 73 (169)
+++.+|+|||||++++ .+.+.||++..+. .+.. ..+.+++|||||++++..++..+++++|++++|||+++.
T Consensus 6 ~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~ 85 (164)
T cd04175 6 VLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQ 85 (164)
T ss_pred EECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCH
Confidence 5789999999999986 4556678774432 3444 367788999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931 74 ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS 151 (169)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (169)
.+|+.+.+|+..+.+.....+.|+++++||+|+.+.. +..+. ..+. +..+++++++||++|.|++++|.++++
T Consensus 86 ~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~----~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 160 (164)
T cd04175 86 STFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQG-QNLA----RQWGCAFLETSAKAKINVNEIFYDLVR 160 (164)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHH-HHHH----HHhCCEEEEeeCCCCCCHHHHHHHHHH
Confidence 9999999999998765555689999999999996532 22221 1111 223457999999999999999999987
Q ss_pred HHH
Q 030931 152 TLK 154 (169)
Q Consensus 152 ~~~ 154 (169)
.+.
T Consensus 161 ~l~ 163 (164)
T cd04175 161 QIN 163 (164)
T ss_pred Hhh
Confidence 653
No 59
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.97 E-value=4.2e-30 Score=178.32 Aligned_cols=151 Identities=26% Similarity=0.484 Sum_probs=127.8
Q ss_pred ccccCCCCCceeeeece----eeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH
Q 030931 2 LRVKQPYCTSCTLVKFY----LLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG 77 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~----~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~ 77 (169)
+++.+|+|||||++++. ..+.||.+.....+..+++.+.+||+||++.+...|..++++++++++|+|+++.+++.
T Consensus 24 ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~ 103 (190)
T cd00879 24 FLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQ 103 (190)
T ss_pred EECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHH
Confidence 57789999999999873 35677888777788888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCC-----------CCceeEEEEeeeccCCCHHHHH
Q 030931 78 KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDL-----------KNRKWHIQGTCALKGDGLYEGL 146 (169)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~Sa~~~~gi~~~~ 146 (169)
....|+..+++.....+.|+++++||+|+......+++.+.++.... ..+.+++++|||++|+|++++|
T Consensus 104 ~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~ 183 (190)
T cd00879 104 ESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAF 183 (190)
T ss_pred HHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHH
Confidence 88889988877555567999999999999776677777776654221 1245679999999999999999
Q ss_pred HHHHHH
Q 030931 147 DWLAST 152 (169)
Q Consensus 147 ~~l~~~ 152 (169)
+|+...
T Consensus 184 ~~l~~~ 189 (190)
T cd00879 184 RWLSQY 189 (190)
T ss_pred HHHHhh
Confidence 999865
No 60
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.97 E-value=6.3e-31 Score=178.04 Aligned_cols=147 Identities=16% Similarity=0.247 Sum_probs=116.8
Q ss_pred CccccCCCCCceeeeec-----eeeeeeeeeEEEE--EEEEC--CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931 1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE--KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL 71 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~ 71 (169)
++++.+|+|||||+++| .+.+.||++.++. .+..+ .+.+++||++|++++..++..+++.+|++++|||++
T Consensus 4 ~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 83 (161)
T cd04117 4 LLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDIS 83 (161)
T ss_pred EEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECC
Confidence 36789999999999875 5667889886653 44444 478899999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931 72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 150 (169)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 150 (169)
++++|+.+..|+..+.... ..+.|+++|+||+|+.+.... .+....+. +..+.+|++|||++|.|++++|.+++
T Consensus 84 ~~~sf~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~----~~~~~~~~e~Sa~~~~~v~~~f~~l~ 158 (161)
T cd04117 84 SERSYQHIMKWVSDVDEYA-PEGVQKILIGNKADEEQKRQVGDEQGNKLA----KEYGMDFFETSACTNSNIKESFTRLT 158 (161)
T ss_pred CHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCCCHHHHHHHH----HHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999999886542 247999999999999654321 11222221 22336799999999999999999998
Q ss_pred HH
Q 030931 151 ST 152 (169)
Q Consensus 151 ~~ 152 (169)
+.
T Consensus 159 ~~ 160 (161)
T cd04117 159 EL 160 (161)
T ss_pred hh
Confidence 64
No 61
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.97 E-value=1.2e-30 Score=177.30 Aligned_cols=149 Identities=17% Similarity=0.245 Sum_probs=118.1
Q ss_pred CccccCCCCCceeeeec-----eeeeeeeeeEEEE--EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931 1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL 71 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~ 71 (169)
++++.+++|||||++++ .+.+.||.+.++. .+.. ..+.+++|||+|++++..++..++++++++++|||++
T Consensus 5 ~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~ 84 (165)
T cd01865 5 LIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDIT 84 (165)
T ss_pred EEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEEECC
Confidence 36789999999999976 4567788886543 3333 4588999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHH
Q 030931 72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149 (169)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 149 (169)
++++|+.+..|+..+.... ..+.|+++|+||+|+.+.. ..++..+.. +..+++++++||++|.|+.++|+++
T Consensus 85 ~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv~~l~~~l 158 (165)
T cd01865 85 NEESFNAVQDWSTQIKTYS-WDNAQVILVGNKCDMEDERVVSSERGRQLA-----DQLGFEFFEASAKENINVKQVFERL 158 (165)
T ss_pred CHHHHHHHHHHHHHHHHhC-CCCCCEEEEEECcccCcccccCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHHHHHH
Confidence 9999999999999875432 3478999999999996532 222221111 1234579999999999999999999
Q ss_pred HHHHHh
Q 030931 150 ASTLKE 155 (169)
Q Consensus 150 ~~~~~~ 155 (169)
+..+.+
T Consensus 159 ~~~~~~ 164 (165)
T cd01865 159 VDIICD 164 (165)
T ss_pred HHHHHh
Confidence 987754
No 62
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.97 E-value=8.8e-31 Score=184.96 Aligned_cols=156 Identities=12% Similarity=0.091 Sum_probs=117.6
Q ss_pred CccccCCCCCceeeeec-----eeeeeeeeeEEEE-EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
++++.+|+|||||+++| .+.+.||++.++. .+.. ..+.+.+|||+|++.|..+++.+++++|++|+|||+++
T Consensus 5 vvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~ 84 (222)
T cd04173 5 VVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISR 84 (222)
T ss_pred EEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCC
Confidence 46789999999999975 5678899986653 2333 56889999999999999999999999999999999999
Q ss_pred hhhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-hH--------HHhhhCCCCCCCce-eEEEEeeeccCCC
Q 030931 73 RERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMTP-ME--------VCEGLGLFDLKNRK-WHIQGTCALKGDG 141 (169)
Q Consensus 73 ~~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~-~~--------~~~~~~~~~~~~~~-~~~~~~Sa~~~~g 141 (169)
+++|+.+. .|...+... .++.|+++||||+|+.+.... .+ +....+....+..+ .+|+||||+++.|
T Consensus 85 ~~Sf~~i~~~w~~~~~~~--~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~ 162 (222)
T cd04173 85 PETLDSVLKKWQGETQEF--CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSER 162 (222)
T ss_pred HHHHHHHHHHHHHHHHhh--CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcCCc
Confidence 99999995 566555332 368999999999999643110 00 11111111122334 3799999999985
Q ss_pred -HHHHHHHHHHHHHhhhc
Q 030931 142 -LYEGLDWLASTLKEMRA 158 (169)
Q Consensus 142 -i~~~~~~l~~~~~~~~~ 158 (169)
|.++|+.++.+...+..
T Consensus 163 ~V~~~F~~~~~~~~~~~~ 180 (222)
T cd04173 163 SVRDVFHVATVASLGRGH 180 (222)
T ss_pred CHHHHHHHHHHHHHhccC
Confidence 99999999997776543
No 63
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=2.5e-30 Score=182.12 Aligned_cols=155 Identities=22% Similarity=0.308 Sum_probs=122.7
Q ss_pred CccccCCCCCceeeeec-----eeeeeeeeeEEEEE--EEE---CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEEC
Q 030931 1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK--VQY---KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDS 70 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~--~~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~ 70 (169)
++++.+|+|||||+++| ...+.||++.++.. +.. ..+.+++|||+|++++..++..++++++++++|||+
T Consensus 6 vvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~ 85 (211)
T cd04111 6 IVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDI 85 (211)
T ss_pred EEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEEC
Confidence 36789999999999976 45567888765533 333 357899999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHH
Q 030931 71 LDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDW 148 (169)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 148 (169)
+++++|+.+..|+..+.+.......|+++++||+|+.+.. ..++. ..+. +..+++++++||++|.|++++|++
T Consensus 86 ~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~-~~~~----~~~~~~~~e~Sak~g~~v~e~f~~ 160 (211)
T cd04111 86 TNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEA-EKLA----KDLGMKYIETSARTGDNVEEAFEL 160 (211)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHH-HHHH----HHhCCEEEEEeCCCCCCHHHHHHH
Confidence 9999999999999998765444568899999999986532 22222 1221 233467999999999999999999
Q ss_pred HHHHHHhhhccc
Q 030931 149 LASTLKEMRAAG 160 (169)
Q Consensus 149 l~~~~~~~~~~~ 160 (169)
+.+.+.+.....
T Consensus 161 l~~~~~~~~~~~ 172 (211)
T cd04111 161 LTQEIYERIKRG 172 (211)
T ss_pred HHHHHHHHhhcC
Confidence 999888764433
No 64
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.5e-30 Score=168.82 Aligned_cols=152 Identities=17% Similarity=0.273 Sum_probs=124.3
Q ss_pred cccCCCCCceeeeec-----eeeeeeeeeEEEEE--EEE-----------CCEEEEEEEcCCCCCchhhHHhhccCCCEE
Q 030931 3 RVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK--VQY-----------KNVIFTVWDVGGQEKLRPLWRHYFNNTDGL 64 (169)
Q Consensus 3 ~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~--~~~-----------~~~~~~i~D~~G~~~~~~~~~~~~~~~~~i 64 (169)
++..|+||||+++++ .++..+|+|+++.. +-+ ..+.+++|||+||++|+++.-.+++.|=++
T Consensus 15 LGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfRDAMGF 94 (219)
T KOG0081|consen 15 LGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGF 94 (219)
T ss_pred hccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHHhhccc
Confidence 568899999999975 77889999987754 222 248899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHH
Q 030931 65 IYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 144 (169)
Q Consensus 65 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 144 (169)
+++||+++..+|.+++.|+.++.-+.-..++.++++|||+|+.+.. ++.+........++++||||+||-+|.|+++
T Consensus 95 lLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R---~Vs~~qa~~La~kyglPYfETSA~tg~Nv~k 171 (219)
T KOG0081|consen 95 LLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQR---VVSEDQAAALADKYGLPYFETSACTGTNVEK 171 (219)
T ss_pred eEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhh---hhhHHHHHHHHHHhCCCeeeeccccCcCHHH
Confidence 9999999999999999999988665555678899999999997653 2222222222356677899999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030931 145 GLDWLASTLKEMR 157 (169)
Q Consensus 145 ~~~~l~~~~~~~~ 157 (169)
..+.+...+.++.
T Consensus 172 ave~LldlvM~Ri 184 (219)
T KOG0081|consen 172 AVELLLDLVMKRI 184 (219)
T ss_pred HHHHHHHHHHHHH
Confidence 9888888777754
No 65
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.97 E-value=2.6e-30 Score=182.68 Aligned_cols=152 Identities=15% Similarity=0.186 Sum_probs=120.3
Q ss_pred CccccCCCCCceeeeec-----eeeeeeeeeEEEE--EEEE---CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEEC
Q 030931 1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE--KVQY---KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDS 70 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~--~~~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~ 70 (169)
++++.+++|||||+++| ...+.||++.++. .+.. ..+.+++|||+|++.+..++..+++++|++|+|||+
T Consensus 4 ~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~ 83 (215)
T cd04109 4 VVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDV 83 (215)
T ss_pred EEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEEC
Confidence 36789999999999987 4677889986653 3443 358999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHhcCCC--CCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHH
Q 030931 71 LDRERIGKAKQEFQAIIKDPF--MLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL 146 (169)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~--~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 146 (169)
+++++|+.+..|+..+.+... ..+.|+++|+||+|+.+.. ..++.. .+. ...+++++++||++|+|++++|
T Consensus 84 t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~-~~~----~~~~~~~~~iSAktg~gv~~lf 158 (215)
T cd04109 84 TNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHA-RFA----QANGMESCLVSAKTGDRVNLLF 158 (215)
T ss_pred CCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHH-HHH----HHcCCEEEEEECCCCCCHHHHH
Confidence 999999999999888866332 2457899999999996432 212111 111 2234579999999999999999
Q ss_pred HHHHHHHHhhh
Q 030931 147 DWLASTLKEMR 157 (169)
Q Consensus 147 ~~l~~~~~~~~ 157 (169)
++++..+....
T Consensus 159 ~~l~~~l~~~~ 169 (215)
T cd04109 159 QQLAAELLGVD 169 (215)
T ss_pred HHHHHHHHhcc
Confidence 99999887653
No 66
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.97 E-value=3e-30 Score=180.38 Aligned_cols=151 Identities=18% Similarity=0.249 Sum_probs=120.9
Q ss_pred CccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEEC--CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931 1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL 71 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~ 71 (169)
++++.+|+|||||+++| .+.+.||++..+ ..+... .+.+.+||+||++.+..++..++++++++++|||++
T Consensus 10 vvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~ 89 (199)
T cd04110 10 LIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVT 89 (199)
T ss_pred EEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECC
Confidence 46789999999999976 456788988654 344443 478999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHH
Q 030931 72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149 (169)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 149 (169)
++++|..+..|+..+.... ...|+++|+||+|+.+... .++..... ...+++++++||++|.||+++|+++
T Consensus 90 ~~~s~~~~~~~~~~i~~~~--~~~piivVgNK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~gi~~lf~~l 162 (199)
T cd04110 90 NGESFVNVKRWLQEIEQNC--DDVCKVLVGNKNDDPERKVVETEDAYKFA-----GQMGISLFETSAKENINVEEMFNCI 162 (199)
T ss_pred CHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEECCCCcCHHHHHHHH
Confidence 9999999999999875533 5789999999999965422 22222111 1234679999999999999999999
Q ss_pred HHHHHhhhc
Q 030931 150 ASTLKEMRA 158 (169)
Q Consensus 150 ~~~~~~~~~ 158 (169)
...+...+.
T Consensus 163 ~~~~~~~~~ 171 (199)
T cd04110 163 TELVLRAKK 171 (199)
T ss_pred HHHHHHhhh
Confidence 998877543
No 67
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.97 E-value=5.2e-30 Score=173.09 Aligned_cols=148 Identities=14% Similarity=0.127 Sum_probs=116.1
Q ss_pred CccccCCCCCceeeeec-----eeeeeeeeeEEEE-EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
++++.+|+|||||+++| ...+.||.+..+. .+.. ..+.+++|||+|++++..++..+++.++++++|||+++
T Consensus 5 ~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~ 84 (162)
T cd04138 5 VVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINS 84 (162)
T ss_pred EEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCC
Confidence 46789999999999976 4556677774432 2333 34678899999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM-TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS 151 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (169)
+.+|..+..|+..+.+.....+.|+++|+||+|+.+.. ...+..... +..+++++++||++|.|++++|+++++
T Consensus 85 ~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (162)
T cd04138 85 RKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLA-----KSYGIPYIETSAKTRQGVEEAFYTLVR 159 (162)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHH-----HHhCCeEEEecCCCCCCHHHHHHHHHH
Confidence 99999999998888765445689999999999986532 222222111 223457999999999999999999987
Q ss_pred HH
Q 030931 152 TL 153 (169)
Q Consensus 152 ~~ 153 (169)
.+
T Consensus 160 ~~ 161 (162)
T cd04138 160 EI 161 (162)
T ss_pred Hh
Confidence 54
No 68
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.97 E-value=2.8e-30 Score=175.84 Aligned_cols=149 Identities=21% Similarity=0.300 Sum_probs=119.5
Q ss_pred CccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931 1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL 71 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~ 71 (169)
++++.+++|||||+++| .+.+.||.+..+ ..+.. ..+.+++||++|++++..++..+++++|++++|||++
T Consensus 7 ~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~ 86 (167)
T cd01867 7 LLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDIT 86 (167)
T ss_pred EEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECc
Confidence 46789999999999976 566788888654 33444 3578999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHH
Q 030931 72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149 (169)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 149 (169)
++++|..+.+|+..+.+.. ..+.|+++|+||+|+.+.. ..++..... ...+++++++||++|.|++++|.++
T Consensus 87 ~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~~~~~i 160 (167)
T cd01867 87 DEKSFENIRNWMRNIEEHA-SEDVERMLVGNKCDMEEKRVVSKEEGEALA-----DEYGIKFLETSAKANINVEEAFFTL 160 (167)
T ss_pred CHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999886532 3579999999999997532 222322211 2334579999999999999999999
Q ss_pred HHHHHh
Q 030931 150 ASTLKE 155 (169)
Q Consensus 150 ~~~~~~ 155 (169)
++.+..
T Consensus 161 ~~~~~~ 166 (167)
T cd01867 161 AKDIKK 166 (167)
T ss_pred HHHHHh
Confidence 998754
No 69
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.97 E-value=1.3e-30 Score=176.58 Aligned_cols=148 Identities=16% Similarity=0.195 Sum_probs=114.8
Q ss_pred CccccCCCCCceeeeec-----eeeeeeeee-EEEEEEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 1 MLRVKQPYCTSCTLVKF-----YLLFLLLVR-FNVEKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~-~~~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
++++.+|+|||||+++| .+.+.||.+ .....+.. ..+.+++|||||++++..++..+++++|++++|||+++
T Consensus 5 ~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~ 84 (163)
T cd04176 5 VVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVN 84 (163)
T ss_pred EEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEEECCC
Confidence 36789999999999765 455667765 22233333 45678999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 150 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 150 (169)
+++|.++..|+..+.+.....+.|+++|+||+|+..... ..+ ...+. ...+++++++||++|.|+.++|.+++
T Consensus 85 ~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~-~~~~~----~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04176 85 QQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAE-GRALA----EEWGCPFMETSAKSKTMVNELFAEIV 159 (163)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHH-HHHHH----HHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 999999999988887654446899999999999854322 111 11111 12245799999999999999999998
Q ss_pred HHH
Q 030931 151 STL 153 (169)
Q Consensus 151 ~~~ 153 (169)
+.+
T Consensus 160 ~~l 162 (163)
T cd04176 160 RQM 162 (163)
T ss_pred Hhc
Confidence 754
No 70
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.97 E-value=1.4e-29 Score=171.98 Aligned_cols=148 Identities=21% Similarity=0.295 Sum_probs=118.4
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEE--EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
+.+.+|+|||||++++ .+.+.||++..+. .+.. ..+.+++|||+|++.+..++..++++++++|+|||+++
T Consensus 5 ~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~ 84 (168)
T cd04119 5 SMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTD 84 (168)
T ss_pred EECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCC
Confidence 5789999999999976 5577888886543 3333 56889999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCC----CCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPF----MLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL 146 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~----~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 146 (169)
+++++....|+..+.+... ..+.|+++|+||+|+.+. .+.++..... ...+++++++||++|.|++++|
T Consensus 85 ~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~ 159 (168)
T cd04119 85 RQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWA-----ESKGFKYFETSACTGEGVNEMF 159 (168)
T ss_pred HHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHH-----HHcCCeEEEEECCCCCCHHHHH
Confidence 9999999999998876432 257999999999998632 2222222211 2234679999999999999999
Q ss_pred HHHHHHHH
Q 030931 147 DWLASTLK 154 (169)
Q Consensus 147 ~~l~~~~~ 154 (169)
+++.+.+.
T Consensus 160 ~~l~~~l~ 167 (168)
T cd04119 160 QTLFSSIV 167 (168)
T ss_pred HHHHHHHh
Confidence 99998765
No 71
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.97 E-value=3.3e-29 Score=168.30 Aligned_cols=150 Identities=29% Similarity=0.479 Sum_probs=127.7
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhH
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERI 76 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~ 76 (169)
|++.+|+|||||++++ ...+.||+++++..+..+.+.+.+||+||++.+..++..+++.++++++|+|+++..++
T Consensus 4 i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~ 83 (159)
T cd04159 4 LVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTAL 83 (159)
T ss_pred EEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHH
Confidence 5788999999999976 56688999988888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931 77 GKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS 151 (169)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (169)
.....|+..++......+.|+++|+||+|+.+.....++...++........++++++||++|.|++++++++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 84 EAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred HHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 888888888876544568999999999998766555555555554444455678999999999999999999875
No 72
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.97 E-value=1.7e-30 Score=178.04 Aligned_cols=150 Identities=19% Similarity=0.220 Sum_probs=112.0
Q ss_pred CccccCCCCCceeeee-----ceeeeeeeeeEEEE-EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 1 MLRVKQPYCTSCTLVK-----FYLLFLLLVRFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~-----f~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
++++.+|+|||||+.+ |.+.+.||++..+. .+.. ..+++++|||+|++.+..++..+++++|++|+|||+++
T Consensus 5 ~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~ 84 (174)
T cd01871 5 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVS 84 (174)
T ss_pred EEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCC
Confidence 4678999999999965 56778888874432 2333 45889999999999999999999999999999999999
Q ss_pred hhhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhh--------hCCCCCCCce-eEEEEeeeccCCC
Q 030931 73 RERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMT-PMEVCEG--------LGLFDLKNRK-WHIQGTCALKGDG 141 (169)
Q Consensus 73 ~~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~--------~~~~~~~~~~-~~~~~~Sa~~~~g 141 (169)
+++|+.+. .|+..+... .++.|+++|+||+|+.+... .+.+... .+.......+ +++++|||++|+|
T Consensus 85 ~~sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 162 (174)
T cd01871 85 PASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQKG 162 (174)
T ss_pred HHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccccCC
Confidence 99999996 587766543 25799999999999954211 1111000 0000111222 4799999999999
Q ss_pred HHHHHHHHHHH
Q 030931 142 LYEGLDWLAST 152 (169)
Q Consensus 142 i~~~~~~l~~~ 152 (169)
++++|+.++..
T Consensus 163 i~~~f~~l~~~ 173 (174)
T cd01871 163 LKTVFDEAIRA 173 (174)
T ss_pred HHHHHHHHHHh
Confidence 99999999864
No 73
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.97 E-value=4.4e-30 Score=174.56 Aligned_cols=149 Identities=22% Similarity=0.342 Sum_probs=117.7
Q ss_pred CccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEEC--CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931 1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL 71 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~ 71 (169)
++++.+|+|||||++++ ...+.||.+..+ ..+..+ .+++++||+||++++..++..++++++++++|||++
T Consensus 6 ~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~ 85 (166)
T cd01869 6 LLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 85 (166)
T ss_pred EEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECc
Confidence 36789999999999986 345667777544 334443 578999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHH
Q 030931 72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149 (169)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 149 (169)
++++|..+..|+..+.+.. .++.|+++++||+|+.... ..++... +. +..+++++++||++|.|++++|.++
T Consensus 86 ~~~s~~~l~~~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~~v~~~~~~i 159 (166)
T cd01869 86 DQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTDKRVVDYSEAQE-FA----DELGIPFLETSAKNATNVEQAFMTM 159 (166)
T ss_pred CHHHHHhHHHHHHHHHHhC-CCCCcEEEEEEChhcccccCCCHHHHHH-HH----HHcCCeEEEEECCCCcCHHHHHHHH
Confidence 9999999999998885532 3578999999999986432 2222221 11 2335679999999999999999999
Q ss_pred HHHHHh
Q 030931 150 ASTLKE 155 (169)
Q Consensus 150 ~~~~~~ 155 (169)
++.+.+
T Consensus 160 ~~~~~~ 165 (166)
T cd01869 160 AREIKK 165 (166)
T ss_pred HHHHHh
Confidence 988753
No 74
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.96 E-value=3.8e-30 Score=174.47 Aligned_cols=150 Identities=15% Similarity=0.174 Sum_probs=116.3
Q ss_pred CccccCCCCCceeeeec-----eeeeeeeeeEEE-EEEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNV-EKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~-~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
++++.+|+|||||+++| ...+.||.+..+ ..+.. ..+++++|||||++++..++..+++.++++++|||+++
T Consensus 4 ~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 83 (164)
T smart00173 4 VVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITD 83 (164)
T ss_pred EEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCC
Confidence 36789999999999976 345556665322 22333 45889999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 150 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 150 (169)
+++|+.+..|...+.+.....+.|+++|+||+|+.+.. ..++..... +..+.+++++||++|.|++++|++++
T Consensus 84 ~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~l~~~l~ 158 (164)
T smart00173 84 RQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELA-----RQWGCPFLETSAKERVNVDEAFYDLV 158 (164)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHH-----HHcCCEEEEeecCCCCCHHHHHHHHH
Confidence 99999999998887664444579999999999986532 222221111 22336799999999999999999999
Q ss_pred HHHHh
Q 030931 151 STLKE 155 (169)
Q Consensus 151 ~~~~~ 155 (169)
+.+..
T Consensus 159 ~~~~~ 163 (164)
T smart00173 159 REIRK 163 (164)
T ss_pred HHHhh
Confidence 87653
No 75
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.96 E-value=2.6e-29 Score=171.78 Aligned_cols=150 Identities=38% Similarity=0.692 Sum_probs=129.1
Q ss_pred ccccCCCCCceeeeeceee----eeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH
Q 030931 2 LRVKQPYCTSCTLVKFYLL----FLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG 77 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~----~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~ 77 (169)
+++.+|+|||||++++... +.||.|++...+...+..+.+||++|+..+...+..+++.++++++|+|+++..++.
T Consensus 19 i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~ 98 (173)
T cd04155 19 ILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLE 98 (173)
T ss_pred EEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHH
Confidence 6789999999999988544 678899888888888999999999999998889999999999999999999988898
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931 78 KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS 151 (169)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (169)
....++..+++.....++|+++++||+|+.+....+++.+.++......+.++++++||++|+|++++|+|+++
T Consensus 99 ~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 99 EAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred HHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence 88888888776544457999999999999776666777777776555556677899999999999999999975
No 76
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.96 E-value=1.9e-29 Score=181.08 Aligned_cols=153 Identities=15% Similarity=0.079 Sum_probs=120.3
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeE-EEEEEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRF-NVEKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR 73 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~-~~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 73 (169)
+++.+|+|||||+++| ...+.||++. ....+.. ..+.++||||+|++.|..++..++..+|++|+|||++++
T Consensus 5 vlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~ 84 (247)
T cd04143 5 VLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNR 84 (247)
T ss_pred EECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCH
Confidence 5779999999999987 4567788862 2233444 458899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcCC--------CCCCCeEEEEEeCCCCCC--CCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHH
Q 030931 74 ERIGKAKQEFQAIIKDP--------FMLNSVILVFANKQDMKG--AMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLY 143 (169)
Q Consensus 74 ~~~~~~~~~~~~~~~~~--------~~~~~piivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 143 (169)
++|+.+..|+.++.... ...+.|+++|+||+|+.. ....+++.+..+. ...+.++++||++|.|++
T Consensus 85 ~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~----~~~~~~~evSAktg~gI~ 160 (247)
T cd04143 85 ESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGG----DENCAYFEVSAKKNSNLD 160 (247)
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHh----cCCCEEEEEeCCCCCCHH
Confidence 99999999988886531 235799999999999964 3344554444321 224679999999999999
Q ss_pred HHHHHHHHHHHhhhc
Q 030931 144 EGLDWLASTLKEMRA 158 (169)
Q Consensus 144 ~~~~~l~~~~~~~~~ 158 (169)
++|+++...+.-...
T Consensus 161 elf~~L~~~~~~p~e 175 (247)
T cd04143 161 EMFRALFSLAKLPNE 175 (247)
T ss_pred HHHHHHHHHhccccc
Confidence 999999987654443
No 77
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=2.3e-30 Score=180.03 Aligned_cols=148 Identities=12% Similarity=0.067 Sum_probs=109.3
Q ss_pred CccccCCCCCceeee-e----------ceeeeeeeeeE-E-EE-----------EEEECCEEEEEEEcCCCCCchhhHHh
Q 030931 1 MLRVKQPYCTSCTLV-K----------FYLLFLLLVRF-N-VE-----------KVQYKNVIFTVWDVGGQEKLRPLWRH 56 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~-~----------f~~~~~~t~~~-~-~~-----------~~~~~~~~~~i~D~~G~~~~~~~~~~ 56 (169)
++++..|+|||||+. + |.+.+.||++. . +. .++...+++++|||+|++. .+...
T Consensus 6 v~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~~~~~ 83 (195)
T cd01873 6 VVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--KDRRF 83 (195)
T ss_pred EEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--hhhcc
Confidence 367899999999995 3 34567899863 2 21 2334579999999999975 35667
Q ss_pred hccCCCEEEEEEECCChhhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC----------------HhHHHhhh
Q 030931 57 YFNNTDGLIYVVDSLDRERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMT----------------PMEVCEGL 119 (169)
Q Consensus 57 ~~~~~~~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~----------------~~~~~~~~ 119 (169)
++++++++|+|||++++.+|+.+. .|+..+.+.. ++.|+++||||+|+.+... ...+....
T Consensus 84 ~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e 161 (195)
T cd01873 84 AYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC--PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPET 161 (195)
T ss_pred cCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhccccccchhhhcccccccccccCCccCHHH
Confidence 899999999999999999999997 5888775433 4789999999999863100 01111111
Q ss_pred CCCCCCCceeEEEEeeeccCCCHHHHHHHHHHH
Q 030931 120 GLFDLKNRKWHIQGTCALKGDGLYEGLDWLAST 152 (169)
Q Consensus 120 ~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 152 (169)
+...++..+++|+||||++|.||+++|+.+++.
T Consensus 162 ~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 162 GRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 222224456789999999999999999999864
No 78
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.96 E-value=5.7e-30 Score=173.46 Aligned_cols=148 Identities=15% Similarity=0.161 Sum_probs=115.6
Q ss_pred CccccCCCCCceeeeec-----eeeeeeeeeEEEE-EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
++++.+++|||||+++| ...+.||.+..+. .+.. ..+.+++|||||++++..++..++++++++++|||+++
T Consensus 6 ~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~ 85 (164)
T cd04145 6 VVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTD 85 (164)
T ss_pred EEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCC
Confidence 36789999999999986 4555667664332 2333 45789999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 150 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 150 (169)
+.+|+.+..|+..+.+.....+.|+++++||+|+.... ..++.. .+ .+..+++++++||++|.|+.++|++++
T Consensus 86 ~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~-~~----~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 160 (164)
T cd04145 86 RGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQ-EL----ARKLKIPYIETSAKDRLNVDKAFHDLV 160 (164)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHH-HH----HHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999888764444578999999999986532 222211 11 122345799999999999999999998
Q ss_pred HHH
Q 030931 151 STL 153 (169)
Q Consensus 151 ~~~ 153 (169)
+.+
T Consensus 161 ~~~ 163 (164)
T cd04145 161 RVI 163 (164)
T ss_pred Hhh
Confidence 764
No 79
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.96 E-value=9e-30 Score=172.99 Aligned_cols=145 Identities=12% Similarity=0.096 Sum_probs=112.4
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEEE---EEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK---VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR 73 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 73 (169)
+++.+|+|||||+++| ...+.||.+..+.. .+...+.+++|||+|++++..++..+++.++++++|||++++
T Consensus 6 ~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~ 85 (165)
T cd04140 6 VFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSK 85 (165)
T ss_pred EECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCH
Confidence 5779999999999976 45667887744432 233568899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcC--CCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHH
Q 030931 74 ERIGKAKQEFQAIIKD--PFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149 (169)
Q Consensus 74 ~~~~~~~~~~~~~~~~--~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 149 (169)
++++.+..|+..+.+. ...++.|+++|+||+|+..... ..+. ..+ ....++++++|||++|.|++++|+++
T Consensus 86 ~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~-~~~----~~~~~~~~~e~SA~~g~~v~~~f~~l 160 (165)
T cd04140 86 QSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEG-AAC----ATEWNCAFMETSAKTNHNVQELFQEL 160 (165)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHH-HHH----HHHhCCcEEEeecCCCCCHHHHHHHH
Confidence 9999999887766442 1235799999999999965221 1111 111 12234569999999999999999999
Q ss_pred HH
Q 030931 150 AS 151 (169)
Q Consensus 150 ~~ 151 (169)
+.
T Consensus 161 ~~ 162 (165)
T cd04140 161 LN 162 (165)
T ss_pred Hh
Confidence 75
No 80
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.96 E-value=6e-29 Score=168.35 Aligned_cols=148 Identities=15% Similarity=0.185 Sum_probs=115.8
Q ss_pred CccccCCCCCceeeeec-----eeeeeeeeeEEEEE----EEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931 1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK----VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL 71 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~ 71 (169)
++++.+|+|||||+++| .+.+.+|.+..... ++...+.+++|||+|++++..++..+++.+|++++|||++
T Consensus 4 ~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~ 83 (161)
T cd04124 4 ILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVT 83 (161)
T ss_pred EEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECC
Confidence 36789999999999976 44555666644332 2335678999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931 72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS 151 (169)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (169)
++.+++.+..|+..+.+. .++.|+++|+||+|+.... ..+. ..+ ....+++++++||++|.|++++|+.+.+
T Consensus 84 ~~~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~Dl~~~~-~~~~-~~~----~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 155 (161)
T cd04124 84 RKITYKNLSKWYEELREY--RPEIPCIVVANKIDLDPSV-TQKK-FNF----AEKHNLPLYYVSAADGTNVVKLFQDAIK 155 (161)
T ss_pred CHHHHHHHHHHHHHHHHh--CCCCcEEEEEECccCchhH-HHHH-HHH----HHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 999999999999888553 2478999999999985321 1111 111 1223467999999999999999999998
Q ss_pred HHHhh
Q 030931 152 TLKEM 156 (169)
Q Consensus 152 ~~~~~ 156 (169)
.+.++
T Consensus 156 ~~~~~ 160 (161)
T cd04124 156 LAVSY 160 (161)
T ss_pred HHHhc
Confidence 87765
No 81
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.96 E-value=2.3e-29 Score=174.41 Aligned_cols=151 Identities=19% Similarity=0.218 Sum_probs=119.4
Q ss_pred CccccCCCCCceeeeec-----eeeeeeeeeEEEE--EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931 1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL 71 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~ 71 (169)
++++.+|+|||||+++| .+.+.||++..+. .+.. ..+.+++||++|++++..++..+++++|++++|||++
T Consensus 4 ~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~ 83 (188)
T cd04125 4 VIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVT 83 (188)
T ss_pred EEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECc
Confidence 36789999999999976 4446788885443 3333 4578899999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHH
Q 030931 72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149 (169)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 149 (169)
++++|..+..|+..+.... ..+.|+++++||+|+.+.. +..+. ..+. ...+++++++||++|.|++++|+++
T Consensus 84 ~~~s~~~i~~~~~~i~~~~-~~~~~~ivv~nK~Dl~~~~~v~~~~~-~~~~----~~~~~~~~evSa~~~~~i~~~f~~l 157 (188)
T cd04125 84 DQESFENLKFWINEINRYA-RENVIKVIVANKSDLVNNKVVDSNIA-KSFC----DSLNIPFFETSAKQSINVEEAFILL 157 (188)
T ss_pred CHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCCCcccccCCHHHH-HHHH----HHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 9999999999998886532 2468999999999986432 22221 1111 2234579999999999999999999
Q ss_pred HHHHHhhh
Q 030931 150 ASTLKEMR 157 (169)
Q Consensus 150 ~~~~~~~~ 157 (169)
++.+.++.
T Consensus 158 ~~~~~~~~ 165 (188)
T cd04125 158 VKLIIKRL 165 (188)
T ss_pred HHHHHHHh
Confidence 99888764
No 82
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.96 E-value=1.7e-29 Score=172.85 Aligned_cols=153 Identities=18% Similarity=0.179 Sum_probs=114.1
Q ss_pred CccccCCCCCceeeeec-----eeeeeeeeeEEEE-EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
++++.+|+|||||+++| ...+.||.+..+. .+.. ..+.+++|||||++.+..++..+++++|++|+|||+++
T Consensus 2 ~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~ 81 (174)
T smart00174 2 VVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDS 81 (174)
T ss_pred EEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECCC
Confidence 47889999999999976 4556677765443 2333 45789999999999999999999999999999999999
Q ss_pred hhhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHH--------hhhCCCCCCCce-eEEEEeeeccCCC
Q 030931 73 RERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMT-PMEVC--------EGLGLFDLKNRK-WHIQGTCALKGDG 141 (169)
Q Consensus 73 ~~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~--------~~~~~~~~~~~~-~~~~~~Sa~~~~g 141 (169)
+++|+.+. .|+..+.+.. ++.|+++|+||+|+..... ..++. ........+..+ .+|+++||++|.|
T Consensus 82 ~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 159 (174)
T smart00174 82 PASFENVKEKWYPEVKHFC--PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEG 159 (174)
T ss_pred HHHHHHHHHHHHHHHHhhC--CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCC
Confidence 99999986 5888775533 5899999999999864211 00000 000000112223 3799999999999
Q ss_pred HHHHHHHHHHHHHh
Q 030931 142 LYEGLDWLASTLKE 155 (169)
Q Consensus 142 i~~~~~~l~~~~~~ 155 (169)
++++|+.+++.+.+
T Consensus 160 v~~lf~~l~~~~~~ 173 (174)
T smart00174 160 VREVFEEAIRAALN 173 (174)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999987643
No 83
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.96 E-value=1.4e-29 Score=170.84 Aligned_cols=145 Identities=10% Similarity=0.086 Sum_probs=107.6
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEEEEEECC--EEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChh
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEKVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE 74 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 74 (169)
+++..|+|||||+++| .+.+.|+.+.....+..++ +.+++|||+|++. ..+++++|++++|||+++++
T Consensus 5 vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~~~~~ 79 (158)
T cd04103 5 IVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSLENEA 79 (158)
T ss_pred EECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEECCCHH
Confidence 5779999999999986 3445555554444555544 7799999999974 34678899999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCC-ceeEEEEeeeccCCCHHHHHHHHHHH
Q 030931 75 RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKN-RKWHIQGTCALKGDGLYEGLDWLAST 152 (169)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~~~~~l~~~ 152 (169)
+|+.+..|+.++......++.|+++||||+|+.... .+++....+....+. ..+.|++|||++|.||+++|+++++.
T Consensus 80 sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~-~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 80 SFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESN-PRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcC-CcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence 999999999998776555679999999999984311 111211111111112 24679999999999999999999864
No 84
>PLN03110 Rab GTPase; Provisional
Probab=99.96 E-value=2.4e-29 Score=177.79 Aligned_cols=152 Identities=20% Similarity=0.264 Sum_probs=121.3
Q ss_pred CccccCCCCCceeeeec-----eeeeeeeeeEEEE--EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931 1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL 71 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~ 71 (169)
++++.+|+|||||+++| ...+.||++.++. .+.. ..+.+++||++|++++..++..+++.++++++|||++
T Consensus 16 ~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~ 95 (216)
T PLN03110 16 VLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIT 95 (216)
T ss_pred EEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECC
Confidence 36789999999999976 4466788887653 3444 3579999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931 72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 150 (169)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 150 (169)
++.+|+.+..|+..+.... ..+.|+++|+||+|+...... .+....+. ...+++++++||++|.|++++|++++
T Consensus 96 ~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~----~~~~~~~~e~SA~~g~~v~~lf~~l~ 170 (216)
T PLN03110 96 KRQTFDNVQRWLRELRDHA-DSNIVIMMAGNKSDLNHLRSVAEEDGQALA----EKEGLSFLETSALEATNVEKAFQTIL 170 (216)
T ss_pred ChHHHHHHHHHHHHHHHhC-CCCCeEEEEEEChhcccccCCCHHHHHHHH----HHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999998876532 257999999999998643221 22222222 23456899999999999999999999
Q ss_pred HHHHhhh
Q 030931 151 STLKEMR 157 (169)
Q Consensus 151 ~~~~~~~ 157 (169)
..+.+..
T Consensus 171 ~~i~~~~ 177 (216)
T PLN03110 171 LEIYHII 177 (216)
T ss_pred HHHHHHh
Confidence 9887743
No 85
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.96 E-value=2.2e-29 Score=174.94 Aligned_cols=151 Identities=23% Similarity=0.338 Sum_probs=119.4
Q ss_pred ccccCCCCCceeeeec------eeeeeeeeeEEEEE--EEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931 2 LRVKQPYCTSCTLVKF------YLLFLLLVRFNVEK--VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL 71 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f------~~~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~ 71 (169)
|++.+++|||||+++| ...+.||.+.++.. +.. ..+.++||||||++++...+..+++.++++|+|||++
T Consensus 5 vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~ 84 (191)
T cd04112 5 LLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDIT 84 (191)
T ss_pred EECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECC
Confidence 6789999999999976 23567787765533 333 4578999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHH
Q 030931 72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149 (169)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 149 (169)
++++|+.+..|+..+.+.. ..+.|+++|+||+|+... ....+... +. ...+++|+++||++|.|++++|.++
T Consensus 85 ~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~~~~~~~~~-l~----~~~~~~~~e~Sa~~~~~v~~l~~~l 158 (191)
T cd04112 85 NKASFDNIRAWLTEIKEYA-QEDVVIMLLGNKADMSGERVVKREDGER-LA----KEYGVPFMETSAKTGLNVELAFTAV 158 (191)
T ss_pred CHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccchhccccCHHHHHH-HH----HHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 9999999999998886542 247899999999998632 22222221 11 2234579999999999999999999
Q ss_pred HHHHHhhhc
Q 030931 150 ASTLKEMRA 158 (169)
Q Consensus 150 ~~~~~~~~~ 158 (169)
.+.+.+...
T Consensus 159 ~~~~~~~~~ 167 (191)
T cd04112 159 AKELKHRKY 167 (191)
T ss_pred HHHHHHhcc
Confidence 999888753
No 86
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.96 E-value=8e-29 Score=168.96 Aligned_cols=147 Identities=14% Similarity=0.167 Sum_probs=115.2
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEE--EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
+++.+++|||||+++| .+.+.||.+..+. .+.. ..+.+++||+||++++..++..++++++++++|||+++
T Consensus 10 vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 89 (170)
T cd04116 10 LLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDD 89 (170)
T ss_pred EECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCC
Confidence 5789999999999987 4556778876543 3333 56789999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCC---CCCCeEEEEEeCCCCCCC-CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPF---MLNSVILVFANKQDMKGA-MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDW 148 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~---~~~~piivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 148 (169)
+++++.+..|..+++.... ..+.|+++|+||+|+... ...++..+... .....+++++||++|.|+.++|++
T Consensus 90 ~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~v~~~~~~ 165 (170)
T cd04116 90 SQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCR----ENGDYPYFETSAKDATNVAAAFEE 165 (170)
T ss_pred HHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHH----HCCCCeEEEEECCCCCCHHHHHHH
Confidence 9999999999888765322 246899999999998642 23333332221 111246999999999999999999
Q ss_pred HHHH
Q 030931 149 LAST 152 (169)
Q Consensus 149 l~~~ 152 (169)
+++.
T Consensus 166 ~~~~ 169 (170)
T cd04116 166 AVRR 169 (170)
T ss_pred HHhh
Confidence 9864
No 87
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.96 E-value=3.1e-29 Score=169.68 Aligned_cols=148 Identities=20% Similarity=0.244 Sum_probs=121.3
Q ss_pred CccccCCCCCceeeeec-----eeeeeeeeeEEEEEE--EE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931 1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEKV--QY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL 71 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~~--~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~ 71 (169)
++++.+|+|||||+++| .+.+.||.+.+.... .. ..+.+++||++|++++..++..++++++++|+|||++
T Consensus 3 ~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~ 82 (162)
T PF00071_consen 3 VVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVT 82 (162)
T ss_dssp EEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETT
T ss_pred EEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 46789999999999975 678888987665443 33 5788999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC--CCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHH
Q 030931 72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG--AMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149 (169)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 149 (169)
++++|+.+..|+..+..... .+.|++++|||.|+.+ ..+.++..... ...+.+|+++||+++.||.++|..+
T Consensus 83 ~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~~~f~~~ 156 (162)
T PF00071_consen 83 DEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFA-----KELGVPYFEVSAKNGENVKEIFQEL 156 (162)
T ss_dssp BHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHH-----HHTTSEEEEEBTTTTTTHHHHHHHH
T ss_pred cccccccccccccccccccc-ccccceeeeccccccccccchhhHHHHHH-----HHhCCEEEEEECCCCCCHHHHHHHH
Confidence 99999999999999876443 4799999999999875 33433322211 2233679999999999999999999
Q ss_pred HHHHH
Q 030931 150 ASTLK 154 (169)
Q Consensus 150 ~~~~~ 154 (169)
++.+.
T Consensus 157 i~~i~ 161 (162)
T PF00071_consen 157 IRKIL 161 (162)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98774
No 88
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.96 E-value=3.1e-29 Score=170.83 Aligned_cols=149 Identities=21% Similarity=0.283 Sum_probs=117.7
Q ss_pred CccccCCCCCceeeeece-----eeeeeeeeEEEE--EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931 1 MLRVKQPYCTSCTLVKFY-----LLFLLLVRFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL 71 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f~-----~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~ 71 (169)
++++.+++|||||++++. ..+.+|.+.++. .+.. ....+.+||++|++++..++..+++.+|++++|||++
T Consensus 8 ~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~ 87 (168)
T cd01866 8 IIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT 87 (168)
T ss_pred EEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECC
Confidence 367899999999999873 444566665442 2333 4578999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHH
Q 030931 72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149 (169)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 149 (169)
++++++.+..|+..+.+.. .++.|+++|+||.|+.+. .+.++..... ...+++++++||++++|++++|+++
T Consensus 88 ~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~i~~~~~~~ 161 (168)
T cd01866 88 RRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDLESRREVSYEEGEAFA-----KEHGLIFMETSAKTASNVEEAFINT 161 (168)
T ss_pred CHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999886542 368999999999998643 2333332221 2335679999999999999999999
Q ss_pred HHHHHh
Q 030931 150 ASTLKE 155 (169)
Q Consensus 150 ~~~~~~ 155 (169)
++.+.+
T Consensus 162 ~~~~~~ 167 (168)
T cd01866 162 AKEIYE 167 (168)
T ss_pred HHHHHh
Confidence 988754
No 89
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.96 E-value=2.3e-29 Score=170.23 Aligned_cols=143 Identities=16% Similarity=0.203 Sum_probs=114.3
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEEE--EEE----CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEEC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK--VQY----KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDS 70 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~--~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~ 70 (169)
+++.+++|||||++++ .+.+.||++.++.. +.. ..+++++|||||++++..++..++++++++++|||+
T Consensus 5 ~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~ 84 (162)
T cd04106 5 VVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACILVFST 84 (162)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEEC
Confidence 6779999999999986 34667888876533 332 468899999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHH
Q 030931 71 LDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDW 148 (169)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 148 (169)
+++++++.+..|+..+.... .+.|+++|+||+|+.... ..++..... ...+++++++||++|.|++++|++
T Consensus 85 ~~~~s~~~l~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~l~~~ 157 (162)
T cd04106 85 TDRESFEAIESWKEKVEAEC--GDIPMVLVQTKIDLLDQAVITNEEAEALA-----KRLQLPLFRTSVKDDFNVTELFEY 157 (162)
T ss_pred CCHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhcccccCCCHHHHHHHH-----HHcCCeEEEEECCCCCCHHHHHHH
Confidence 99999999999998875432 579999999999986532 222222211 223457999999999999999999
Q ss_pred HHH
Q 030931 149 LAS 151 (169)
Q Consensus 149 l~~ 151 (169)
+..
T Consensus 158 l~~ 160 (162)
T cd04106 158 LAE 160 (162)
T ss_pred HHH
Confidence 875
No 90
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.96 E-value=5.5e-29 Score=172.28 Aligned_cols=151 Identities=16% Similarity=0.169 Sum_probs=117.4
Q ss_pred CccccCCCCCceeeeec-----eeeeeeeeeEEEEE-EEE---CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931 1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK-VQY---KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL 71 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~-~~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~ 71 (169)
++++.+|+|||||+++| ...+.||++.++.. +.. ..+.+++|||||++++..+++.+++++|++++|||++
T Consensus 4 ~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~ 83 (187)
T cd04132 4 VVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVD 83 (187)
T ss_pred EEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECC
Confidence 46789999999999976 45667788765432 333 3578999999999999999999999999999999999
Q ss_pred ChhhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCC------CHhHHHhhhCCCCCCCcee-EEEEeeeccCCCHH
Q 030931 72 DRERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAM------TPMEVCEGLGLFDLKNRKW-HIQGTCALKGDGLY 143 (169)
Q Consensus 72 ~~~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~------~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~ 143 (169)
++++|+.+. .|+..+... .++.|+++|+||+|+.... ...+... + ....+. +++++||++|.|+.
T Consensus 84 ~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~-~----~~~~~~~~~~e~Sa~~~~~v~ 156 (187)
T cd04132 84 NPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAES-V----AKKQGAFAYLECSAKTMENVE 156 (187)
T ss_pred CHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhCccccCCcCHHHHHH-H----HHHcCCcEEEEccCCCCCCHH
Confidence 999999986 587776443 2578999999999986432 1222111 1 112233 69999999999999
Q ss_pred HHHHHHHHHHHhhhc
Q 030931 144 EGLDWLASTLKEMRA 158 (169)
Q Consensus 144 ~~~~~l~~~~~~~~~ 158 (169)
++|..+.+.+.....
T Consensus 157 ~~f~~l~~~~~~~~~ 171 (187)
T cd04132 157 EVFDTAIEEALKKEG 171 (187)
T ss_pred HHHHHHHHHHHhhhh
Confidence 999999998887653
No 91
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=8.2e-31 Score=169.96 Aligned_cols=152 Identities=19% Similarity=0.219 Sum_probs=118.6
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEE--EEE--EECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKV--QYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
|++..-+|||||+-|| ..+..+|+...+ ..+ ......+.||||+||++|..+-+.||++++++++|||++|
T Consensus 18 LLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITD 97 (218)
T KOG0088|consen 18 LLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITD 97 (218)
T ss_pred EEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceEEEEeccc
Confidence 5667778999999976 344445554333 333 3356789999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 150 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 150 (169)
+++|..++.|..++.. +....+-+++||||+|+.+... .++.. ..+.+-+..|+++||+.+.||.++|..++
T Consensus 98 rdSFqKVKnWV~Elr~-mlGnei~l~IVGNKiDLEeeR~Vt~qeAe-----~YAesvGA~y~eTSAk~N~Gi~elFe~Lt 171 (218)
T KOG0088|consen 98 RDSFQKVKNWVLELRT-MLGNEIELLIVGNKIDLEEERQVTRQEAE-----AYAESVGALYMETSAKDNVGISELFESLT 171 (218)
T ss_pred hHHHHHHHHHHHHHHH-HhCCeeEEEEecCcccHHHhhhhhHHHHH-----HHHHhhchhheecccccccCHHHHHHHHH
Confidence 9999999999999854 2334689999999999976432 22211 12244556699999999999999999999
Q ss_pred HHHHhhhcc
Q 030931 151 STLKEMRAA 159 (169)
Q Consensus 151 ~~~~~~~~~ 159 (169)
..+.+..+.
T Consensus 172 ~~MiE~~s~ 180 (218)
T KOG0088|consen 172 AKMIEHSSQ 180 (218)
T ss_pred HHHHHHhhh
Confidence 988886543
No 92
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.96 E-value=3.2e-29 Score=171.10 Aligned_cols=148 Identities=16% Similarity=0.278 Sum_probs=116.9
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEE--EEEE--CCEEEEEEEcCCCCCch-hhHHhhccCCCEEEEEEECC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE--KVQY--KNVIFTVWDVGGQEKLR-PLWRHYFNNTDGLIYVVDSL 71 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~-~~~~~~~~~~~~ii~v~d~~ 71 (169)
+++.+|+|||||+++| ...+.||++..+. .+.. ..+.+++||++|++++. .++..+++++|++++|||++
T Consensus 7 vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~ 86 (170)
T cd04115 7 VIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVT 86 (170)
T ss_pred EECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECC
Confidence 5689999999999976 4566778876543 3444 35889999999999886 57888999999999999999
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCCCCCceeEEEEeeecc---CCCHHHHHH
Q 030931 72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCALK---GDGLYEGLD 147 (169)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~gi~~~~~ 147 (169)
++.+|..+..|+..+.......+.|+++|+||+|+..... ..+....+. +...++|+++||++ +.|++++|.
T Consensus 87 ~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~~~~i~~~f~ 162 (170)
T cd04115 87 NMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFA----DAHSMPLFETSAKDPSENDHVEAIFM 162 (170)
T ss_pred CHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHH----HHcCCcEEEEeccCCcCCCCHHHHHH
Confidence 9999999999998887654446899999999999865332 122222222 22346799999999 999999999
Q ss_pred HHHHHH
Q 030931 148 WLASTL 153 (169)
Q Consensus 148 ~l~~~~ 153 (169)
+++..+
T Consensus 163 ~l~~~~ 168 (170)
T cd04115 163 TLAHKL 168 (170)
T ss_pred HHHHHh
Confidence 998765
No 93
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.96 E-value=5.1e-29 Score=168.91 Aligned_cols=147 Identities=16% Similarity=0.212 Sum_probs=115.5
Q ss_pred CccccCCCCCceeeeec-------eeeeeeeeeEEEEE--EEE---CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEE
Q 030931 1 MLRVKQPYCTSCTLVKF-------YLLFLLLVRFNVEK--VQY---KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV 68 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f-------~~~~~~t~~~~~~~--~~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~ 68 (169)
++++.+|+|||||++++ .+.+.||.+.++.. +.. ..+.+.+|||||++.+..++..+++++|++++||
T Consensus 4 ~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 83 (164)
T cd04101 4 AVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFILVY 83 (164)
T ss_pred EEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEE
Confidence 36789999999999865 35677888866532 322 4589999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH-HHhhhCCCCCCCceeEEEEeeeccCCCHHHHHH
Q 030931 69 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME-VCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD 147 (169)
Q Consensus 69 d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 147 (169)
|++++++++.+..|+..+.... .+.|+++|+||+|+.+...... ....+. ...+++++++||++|.|++++|+
T Consensus 84 d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~l~~ 157 (164)
T cd04101 84 DVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAFA----QANQLKFFKTSALRGVGYEEPFE 157 (164)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHHH----HHcCCeEEEEeCCCCCChHHHHH
Confidence 9999999999999998876543 5689999999999865422111 111111 22345799999999999999999
Q ss_pred HHHHHH
Q 030931 148 WLASTL 153 (169)
Q Consensus 148 ~l~~~~ 153 (169)
++.+.+
T Consensus 158 ~l~~~~ 163 (164)
T cd04101 158 SLARAF 163 (164)
T ss_pred HHHHHh
Confidence 998764
No 94
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.96 E-value=5e-29 Score=169.16 Aligned_cols=146 Identities=20% Similarity=0.274 Sum_probs=116.3
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEE--EEEEC--CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE--KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
+++.+++|||||++++ ...+.||.+.++. .+..+ .+.+++||+||++++..++..+++.++++++|||+++
T Consensus 8 vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 87 (165)
T cd01868 8 LIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITK 87 (165)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcC
Confidence 5789999999999986 4466788876543 34443 4689999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 150 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 150 (169)
+.++..+.+|+..+.+.. ..+.|+++|+||+|+.+.. ..++..... ...+++++++||++|.|+.++|+++.
T Consensus 88 ~~s~~~~~~~~~~~~~~~-~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~l~~~l~ 161 (165)
T cd01868 88 KQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTEEAKAFA-----EKNGLSFIETSALDGTNVEEAFKQLL 161 (165)
T ss_pred HHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccccCCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 999999999999886543 2368999999999986532 222322221 12346799999999999999999998
Q ss_pred HHH
Q 030931 151 STL 153 (169)
Q Consensus 151 ~~~ 153 (169)
..+
T Consensus 162 ~~i 164 (165)
T cd01868 162 TEI 164 (165)
T ss_pred HHh
Confidence 765
No 95
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.96 E-value=1.3e-28 Score=171.21 Aligned_cols=150 Identities=15% Similarity=0.176 Sum_probs=117.1
Q ss_pred CccccCCCCCceeeeece------eeeeeeeeEEEE--EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEEC
Q 030931 1 MLRVKQPYCTSCTLVKFY------LLFLLLVRFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDS 70 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f~------~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~ 70 (169)
++++.+++|||||+++|. ..+.||++..+. .+.. ..+.+++||++|++++..++..+++++|++++|||+
T Consensus 4 ~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~ 83 (193)
T cd04118 4 VMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDL 83 (193)
T ss_pred EEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEEEEC
Confidence 367899999999999862 357778885542 3444 357788999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC------CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHH
Q 030931 71 LDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM------TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 144 (169)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 144 (169)
+++++|+.+..|+..+.... ++.|+++|+||+|+.+.. ...+... + ....+++++++||++|.|+++
T Consensus 84 ~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~-~----~~~~~~~~~~~Sa~~~~gv~~ 156 (193)
T cd04118 84 TDSSSFERAKFWVKELQNLE--EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQD-F----ADEIKAQHFETSSKTGQNVDE 156 (193)
T ss_pred CCHHHHHHHHHHHHHHHhcC--CCCCEEEEEEcccccccccccCccCHHHHHH-H----HHHcCCeEEEEeCCCCCCHHH
Confidence 99999999999998885532 478999999999985421 1111111 1 122345789999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030931 145 GLDWLASTLKEMR 157 (169)
Q Consensus 145 ~~~~l~~~~~~~~ 157 (169)
+|+++.+.+.+..
T Consensus 157 l~~~i~~~~~~~~ 169 (193)
T cd04118 157 LFQKVAEDFVSRA 169 (193)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887653
No 96
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.96 E-value=5.4e-29 Score=168.37 Aligned_cols=146 Identities=21% Similarity=0.280 Sum_probs=115.0
Q ss_pred CccccCCCCCceeeeec-----eeeeeeeeeEEEEE--EEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931 1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK--VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL 71 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~ 71 (169)
++++.+++|||||++++ ...+.+|.+..+.. +.. ..+.+++||+||++.+..++..+++.++++++|||++
T Consensus 4 ~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~ 83 (161)
T cd04113 4 IIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDIT 83 (161)
T ss_pred EEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECC
Confidence 36789999999999986 45556677654432 333 3578999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHH
Q 030931 72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149 (169)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 149 (169)
+++++..+..|+..+.... .++.|+++++||+|+.... +.++..... ...+++++++||+++.|++++|+++
T Consensus 84 ~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~~ 157 (161)
T cd04113 84 NRTSFEALPTWLSDARALA-SPNIVVILVGNKSDLADQREVTFLEASRFA-----QENGLLFLETSALTGENVEEAFLKC 157 (161)
T ss_pred CHHHHHHHHHHHHHHHHhC-CCCCeEEEEEEchhcchhccCCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHHHHHH
Confidence 9999999999988775432 3589999999999986532 222322221 2234679999999999999999999
Q ss_pred HHH
Q 030931 150 AST 152 (169)
Q Consensus 150 ~~~ 152 (169)
++.
T Consensus 158 ~~~ 160 (161)
T cd04113 158 ARS 160 (161)
T ss_pred HHh
Confidence 875
No 97
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.96 E-value=4e-28 Score=164.83 Aligned_cols=146 Identities=21% Similarity=0.303 Sum_probs=113.4
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEE--EEEEEECC--EEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFN--VEKVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~--~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
+++.+|+|||||++++ .+.+.+|.+.. ...+..++ +.+++|||||++.+..++..+++.+|++++|||+++
T Consensus 8 vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~ 87 (165)
T cd01864 8 LIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITR 87 (165)
T ss_pred EECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcC
Confidence 5789999999999976 44556777643 34455554 688999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 150 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 150 (169)
+.+|..+..|+..+.... ..+.|+++|+||+|+.+.. ...+...... ......++++||++|.|++++|++++
T Consensus 88 ~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~v~~~~~~l~ 162 (165)
T cd01864 88 RSSFESVPHWIEEVEKYG-ASNVVLLLIGNKCDLEEQREVLFEEACTLAE----KNGMLAVLETSAKESQNVEEAFLLMA 162 (165)
T ss_pred HHHHHhHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHH----HcCCcEEEEEECCCCCCHHHHHHHHH
Confidence 999999999999886532 3579999999999986432 2222211111 11123589999999999999999998
Q ss_pred HH
Q 030931 151 ST 152 (169)
Q Consensus 151 ~~ 152 (169)
+.
T Consensus 163 ~~ 164 (165)
T cd01864 163 TE 164 (165)
T ss_pred Hh
Confidence 75
No 98
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.8e-28 Score=155.11 Aligned_cols=154 Identities=44% Similarity=0.718 Sum_probs=142.5
Q ss_pred cccCCCCCceeeeec----eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHH
Q 030931 3 RVKQPYCTSCTLVKF----YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGK 78 (169)
Q Consensus 3 ~~~~~~~Ktsll~~f----~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~ 78 (169)
++=.|.|||+++.|. .....||+|+++.++.+++.++++||.+|+-..+..|+.||.+.+++|+|+|.+|++++.-
T Consensus 24 lgldGaGkttIlyrlqvgevvttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dris~ 103 (182)
T KOG0072|consen 24 LGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRISI 103 (182)
T ss_pred eeccCCCeeEEEEEcccCcccccCCCCCcCccccccccccceeeEccCcccccHHHHHHhcccceEEEEEeccchhhhhh
Confidence 446899999999987 4567899999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhh
Q 030931 79 AKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM 156 (169)
Q Consensus 79 ~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (169)
....+..++.+..+++..+++++||+|........|+...+++..++++.+.++++||.+|+|+++.++|+.+.+.++
T Consensus 104 a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 104 AGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAMDWLQRPLKSR 181 (182)
T ss_pred hHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHHHHHHHHHHhcc
Confidence 888888899988888999999999999988888889999999888899999999999999999999999999987754
No 99
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.95 E-value=1.7e-28 Score=166.16 Aligned_cols=149 Identities=20% Similarity=0.303 Sum_probs=118.0
Q ss_pred CccccCCCCCceeeeec-----eeeeeeeeeEEEE--EEEEC--CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931 1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE--KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL 71 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~ 71 (169)
++++.+++|||||++++ ...+.+|.+..+. .+... .+.+++||+||++.+..++..+++.+|++++|||++
T Consensus 4 ~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~ 83 (164)
T smart00175 4 ILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDIT 83 (164)
T ss_pred EEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECC
Confidence 46789999999999987 3455567775543 34443 378999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHH
Q 030931 72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149 (169)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 149 (169)
++.+++.+.+|+..+..... +++|+++++||+|+.... ..+.... +. ...+++++++||++|.|++++|+++
T Consensus 84 ~~~s~~~~~~~l~~~~~~~~-~~~pivvv~nK~D~~~~~~~~~~~~~~-~~----~~~~~~~~e~Sa~~~~~i~~l~~~i 157 (164)
T smart00175 84 NRESFENLKNWLKELREYAD-PNVVIMLVGNKSDLEDQRQVSREEAEA-FA----EEHGLPFFETSAKTNTNVEEAFEEL 157 (164)
T ss_pred CHHHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhcccccCCCHHHHHH-HH----HHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999988865432 589999999999986532 2232222 21 2334679999999999999999999
Q ss_pred HHHHHh
Q 030931 150 ASTLKE 155 (169)
Q Consensus 150 ~~~~~~ 155 (169)
.+.+.+
T Consensus 158 ~~~~~~ 163 (164)
T smart00175 158 AREILK 163 (164)
T ss_pred HHHHhh
Confidence 998754
No 100
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.95 E-value=1.1e-28 Score=168.11 Aligned_cols=150 Identities=13% Similarity=0.121 Sum_probs=116.7
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEE-EEEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV-EKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR 73 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~-~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 73 (169)
+++.+|+|||||+++| ...+.||.+..+ ..+.. ..+.+++|||||+++|..+++.+++.++++++|||++++
T Consensus 6 liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~ 85 (168)
T cd04177 6 VLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSE 85 (168)
T ss_pred EECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCH
Confidence 6789999999999986 355667776443 23333 457899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931 74 ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS 151 (169)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (169)
++++....|...+.+.....+.|+++++||+|+.+.. ..++... +.. .....+++++||++|.|++++|++++.
T Consensus 86 ~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~-~~~---~~~~~~~~~~SA~~~~~i~~~f~~i~~ 161 (168)
T cd04177 86 ASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVS-LSQ---QWGNVPFYETSARKRTNVDEVFIDLVR 161 (168)
T ss_pred HHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHH-HHH---HcCCceEEEeeCCCCCCHHHHHHHHHH
Confidence 9999999998888664444589999999999986532 2222111 110 111257999999999999999999998
Q ss_pred HHHh
Q 030931 152 TLKE 155 (169)
Q Consensus 152 ~~~~ 155 (169)
.+..
T Consensus 162 ~~~~ 165 (168)
T cd04177 162 QIIC 165 (168)
T ss_pred HHhh
Confidence 7654
No 101
>PLN03118 Rab family protein; Provisional
Probab=99.95 E-value=3.8e-28 Score=171.17 Aligned_cols=152 Identities=22% Similarity=0.258 Sum_probs=116.0
Q ss_pred CccccCCCCCceeeeece----eeeeeeeeEEEE--EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 1 MLRVKQPYCTSCTLVKFY----LLFLLLVRFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f~----~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
++++.+|+|||||+++|. ..+.||.+..+. .+.. ..+.+.+|||||++++..++..+++.++++++|||+++
T Consensus 18 ~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~ 97 (211)
T PLN03118 18 LLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTR 97 (211)
T ss_pred EEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCC
Confidence 367899999999999873 466677776543 3443 35789999999999999999999999999999999999
Q ss_pred hhhHHHHHH-HHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHH
Q 030931 73 RERIGKAKQ-EFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149 (169)
Q Consensus 73 ~~~~~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 149 (169)
+++|..+.. |...+.......+.|+++|+||+|+..... .++... + ....+++|+++||+++.|++++|+++
T Consensus 98 ~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~-~----~~~~~~~~~e~SAk~~~~v~~l~~~l 172 (211)
T PLN03118 98 RETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMA-L----AKEHGCLFLECSAKTRENVEQCFEEL 172 (211)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHH-H----HHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 999999876 444332222335689999999999865322 222211 1 12234679999999999999999999
Q ss_pred HHHHHhhh
Q 030931 150 ASTLKEMR 157 (169)
Q Consensus 150 ~~~~~~~~ 157 (169)
...+.+..
T Consensus 173 ~~~~~~~~ 180 (211)
T PLN03118 173 ALKIMEVP 180 (211)
T ss_pred HHHHHhhh
Confidence 99887754
No 102
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=8.8e-29 Score=157.99 Aligned_cols=154 Identities=18% Similarity=0.243 Sum_probs=125.0
Q ss_pred CccccCCCCCceeeeec-----eeeeeeeeeEEEEE----EEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931 1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK----VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL 71 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~ 71 (169)
++++..|.|||+|+++| ..+...|+|+.+.+ +...+++++||||+|+++|+...+.|++++.+.++|||++
T Consensus 15 iiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalmvydit 94 (215)
T KOG0097|consen 15 IIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDIT 94 (215)
T ss_pred EEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEEEEeh
Confidence 35778999999999987 34566788876644 3447899999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931 72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 150 (169)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 150 (169)
.+.+++.+..|+.+... ...++..+++++||.|+....+. -+-.+.+ .+..+.-++++||++|+|+++.|-+..
T Consensus 95 rrstynhlsswl~dar~-ltnpnt~i~lignkadle~qrdv~yeeak~f----aeengl~fle~saktg~nvedafle~a 169 (215)
T KOG0097|consen 95 RRSTYNHLSSWLTDARN-LTNPNTVIFLIGNKADLESQRDVTYEEAKEF----AEENGLMFLEASAKTGQNVEDAFLETA 169 (215)
T ss_pred hhhhhhhHHHHHhhhhc-cCCCceEEEEecchhhhhhcccCcHHHHHHH----HhhcCeEEEEecccccCcHHHHHHHHH
Confidence 99999999999998854 33468899999999999765432 1222222 244566799999999999999999999
Q ss_pred HHHHhhhcc
Q 030931 151 STLKEMRAA 159 (169)
Q Consensus 151 ~~~~~~~~~ 159 (169)
+.+.+..+.
T Consensus 170 kkiyqniqd 178 (215)
T KOG0097|consen 170 KKIYQNIQD 178 (215)
T ss_pred HHHHHhhhc
Confidence 888876543
No 103
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.95 E-value=1.4e-27 Score=162.91 Aligned_cols=144 Identities=19% Similarity=0.152 Sum_probs=114.0
Q ss_pred ccccCCCCCceeeeec-----e-eeeeeeeeEEE--EEEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931 2 LRVKQPYCTSCTLVKF-----Y-LLFLLLVRFNV--EKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL 71 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~-~~~~~t~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~ 71 (169)
+++.+|+|||||+++| . ..+.||++..+ ..+.. ..+.+.+||++|++.+..++..+++++|++++|||++
T Consensus 9 ~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~ 88 (169)
T cd01892 9 VLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVACLVYDSS 88 (169)
T ss_pred EECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEEEEEeCC
Confidence 6789999999999987 4 56778888544 33444 3478999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-----CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHH
Q 030931 72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM-----TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL 146 (169)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 146 (169)
++.+|+.+..|+..+.. ..+.|+++|+||+|+.+.. ..+++.+.++.. .++++||++|.|++++|
T Consensus 89 ~~~s~~~~~~~~~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-------~~~~~Sa~~~~~v~~lf 158 (169)
T cd01892 89 DPKSFSYCAEVYKKYFM---LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLP-------PPLHFSSKLGDSSNELF 158 (169)
T ss_pred CHHHHHHHHHHHHHhcc---CCCCeEEEEEEcccccccccccccCHHHHHHHcCCC-------CCEEEEeccCccHHHHH
Confidence 99999999888876532 2379999999999985432 123333333221 26899999999999999
Q ss_pred HHHHHHHHh
Q 030931 147 DWLASTLKE 155 (169)
Q Consensus 147 ~~l~~~~~~ 155 (169)
+.+.+.+..
T Consensus 159 ~~l~~~~~~ 167 (169)
T cd01892 159 TKLATAAQY 167 (169)
T ss_pred HHHHHHhhC
Confidence 999988764
No 104
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.95 E-value=6.6e-28 Score=162.93 Aligned_cols=145 Identities=18% Similarity=0.260 Sum_probs=113.7
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEEC--CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
+++.+++|||||++++ ...+.|+.+.++ ..+..+ .+++++||+||++++..++..+++.++++++|||+++
T Consensus 5 liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 84 (161)
T cd01861 5 FLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITN 84 (161)
T ss_pred EECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcC
Confidence 6789999999999976 345566666544 334443 4679999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 150 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 150 (169)
+++|..+..|+..+..... .+.|+++++||+|+.+.. ..++..... +..+++++++||+++.|++++|++++
T Consensus 85 ~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~l~~~i~ 158 (161)
T cd01861 85 RQSFDNTDKWIDDVRDERG-NDVIIVLVGNKTDLSDKRQVSTEEGEKKA-----KELNAMFIETSAKAGHNVKELFRKIA 158 (161)
T ss_pred HHHHHHHHHHHHHHHHhCC-CCCEEEEEEEChhccccCccCHHHHHHHH-----HHhCCEEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999998865432 379999999999995332 222222211 22346799999999999999999998
Q ss_pred HH
Q 030931 151 ST 152 (169)
Q Consensus 151 ~~ 152 (169)
+.
T Consensus 159 ~~ 160 (161)
T cd01861 159 SA 160 (161)
T ss_pred Hh
Confidence 75
No 105
>PTZ00099 rab6; Provisional
Probab=99.95 E-value=6.2e-28 Score=165.34 Aligned_cols=137 Identities=20% Similarity=0.279 Sum_probs=110.8
Q ss_pred eceeeeeeeeeEEEEE--EEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCC
Q 030931 16 KFYLLFLLLVRFNVEK--VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPF 91 (169)
Q Consensus 16 ~f~~~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~ 91 (169)
.|.+.+.||+|.++.. +.. +.+++.||||+|++++..++..++++||++|+|||++++.+|+.+..|+..+++..
T Consensus 4 ~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~- 82 (176)
T PTZ00099 4 TFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER- 82 (176)
T ss_pred CcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc-
Confidence 5778899999977643 333 56899999999999999999999999999999999999999999999999987643
Q ss_pred CCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhhhc
Q 030931 92 MLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMRA 158 (169)
Q Consensus 92 ~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~ 158 (169)
..+.|+++|+||+|+... ...++.... ....++.|++|||++|+||+++|++++..+.+...
T Consensus 83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~-----~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~ 146 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGDLRKVTYEEGMQK-----AQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDN 146 (176)
T ss_pred CCCCeEEEEEECcccccccCCCHHHHHHH-----HHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhccc
Confidence 257899999999999642 232222211 12334568999999999999999999999887543
No 106
>PLN03108 Rab family protein; Provisional
Probab=99.95 E-value=3.5e-28 Score=171.18 Aligned_cols=151 Identities=19% Similarity=0.266 Sum_probs=119.6
Q ss_pred CccccCCCCCceeeeec-----eeeeeeeeeEEEE--EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931 1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL 71 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~ 71 (169)
+|++.+|+|||||++++ .+.+.||++.++. .+.. ..+.+++|||+|++.+..++..+++.+|++++|||++
T Consensus 10 vivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~ 89 (210)
T PLN03108 10 IIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT 89 (210)
T ss_pred EEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECC
Confidence 46789999999999976 4556678776543 2333 4578999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHH
Q 030931 72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149 (169)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 149 (169)
++++|..+..|+..+.... .++.|+++++||+|+... .+.++..... +..+++++++||+++.|++++|+++
T Consensus 90 ~~~s~~~l~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~e~f~~l 163 (210)
T PLN03108 90 RRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFA-----KEHGLIFMEASAKTAQNVEEAFIKT 163 (210)
T ss_pred cHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999988875432 257999999999999653 2333322211 2334679999999999999999999
Q ss_pred HHHHHhhh
Q 030931 150 ASTLKEMR 157 (169)
Q Consensus 150 ~~~~~~~~ 157 (169)
++.+.+..
T Consensus 164 ~~~~~~~~ 171 (210)
T PLN03108 164 AAKIYKKI 171 (210)
T ss_pred HHHHHHHh
Confidence 99887654
No 107
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.95 E-value=5.4e-29 Score=162.24 Aligned_cols=155 Identities=19% Similarity=0.219 Sum_probs=122.9
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEEE--EEE---CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK--VQY---KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL 71 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~--~~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~ 71 (169)
+++....|||||++.| .+-.-||+|+++.. ++. ..+++++|||+||++|+++...|++++-++++|||.+
T Consensus 13 vigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvllvydit 92 (213)
T KOG0091|consen 13 VIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDIT 92 (213)
T ss_pred EEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceEEEEecc
Confidence 5668889999999976 45557888876532 222 5699999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHhcCCCCC-CCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931 72 DRERIGKAKQEFQAIIKDPFML-NSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 150 (169)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~-~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 150 (169)
++++|+-+..|+.+..-....+ ..-..+||.|+|+..... +..+.+...++..++.++||||++|.|+++.|+.+.
T Consensus 93 nr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRq---Vt~EEaEklAa~hgM~FVETSak~g~NVeEAF~mla 169 (213)
T KOG0091|consen 93 NRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQ---VTAEEAEKLAASHGMAFVETSAKNGCNVEEAFDMLA 169 (213)
T ss_pred chhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhcc---ccHHHHHHHHHhcCceEEEecccCCCcHHHHHHHHH
Confidence 9999999999999876544323 455678999999975432 222222222356777899999999999999999999
Q ss_pred HHHHhhhcc
Q 030931 151 STLKEMRAA 159 (169)
Q Consensus 151 ~~~~~~~~~ 159 (169)
+.+....++
T Consensus 170 qeIf~~i~q 178 (213)
T KOG0091|consen 170 QEIFQAIQQ 178 (213)
T ss_pred HHHHHHHhc
Confidence 988887554
No 108
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.95 E-value=9e-28 Score=162.31 Aligned_cols=147 Identities=20% Similarity=0.292 Sum_probs=116.4
Q ss_pred CccccCCCCCceeeeec-----eeeeeeeeeEEEE--EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931 1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL 71 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~ 71 (169)
++++.+++|||||++++ ...+.||.+.++. .+.. ..+.+++||+||++.+...+..+++.+|++++|||++
T Consensus 4 ~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 83 (161)
T cd01863 4 LLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVT 83 (161)
T ss_pred EEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECC
Confidence 36789999999999976 3346677775443 2333 4578999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931 72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM-TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 150 (169)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 150 (169)
+.++++.+..|+..+.+.....+.|+++|+||+|+.... ..++... +. ...+++++++||++|.|++++++++.
T Consensus 84 ~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~gi~~~~~~~~ 158 (161)
T cd01863 84 RRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLK-FA----RKHNMLFIETSAKTRDGVQQAFEELV 158 (161)
T ss_pred CHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHH-HH----HHcCCEEEEEecCCCCCHHHHHHHHH
Confidence 999999999999888766555689999999999996332 2222222 11 23456799999999999999999988
Q ss_pred HH
Q 030931 151 ST 152 (169)
Q Consensus 151 ~~ 152 (169)
+.
T Consensus 159 ~~ 160 (161)
T cd01863 159 EK 160 (161)
T ss_pred Hh
Confidence 65
No 109
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.95 E-value=2.1e-27 Score=162.01 Aligned_cols=153 Identities=14% Similarity=0.170 Sum_probs=117.8
Q ss_pred CccccCCCCCceeeeec-----eeeeeeeeeEEEE--EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931 1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL 71 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~ 71 (169)
++++.+++|||||++++ ...+.+|.+.++. .+.. ..+.+++||+||++.+..++..++++++++|+|||++
T Consensus 4 ~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 83 (172)
T cd01862 4 IILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVT 83 (172)
T ss_pred EEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECC
Confidence 36789999999999976 3444567665443 3334 4577889999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHhcCCC---CCCCeEEEEEeCCCCCC--CCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHH
Q 030931 72 DRERIGKAKQEFQAIIKDPF---MLNSVILVFANKQDMKG--AMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL 146 (169)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~---~~~~piivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 146 (169)
+++++.....|...++.... ..+.|+++|+||+|+.. ....++...... .....+++++||++|.|++++|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~~l~ 159 (172)
T cd01862 84 NPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQ----SNGNIPYFETSAKEAINVEQAF 159 (172)
T ss_pred CHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHH----HcCCceEEEEECCCCCCHHHHH
Confidence 99999988888877655332 33799999999999973 223344333221 1112579999999999999999
Q ss_pred HHHHHHHHhhh
Q 030931 147 DWLASTLKEMR 157 (169)
Q Consensus 147 ~~l~~~~~~~~ 157 (169)
+++.+.+.+..
T Consensus 160 ~~i~~~~~~~~ 170 (172)
T cd01862 160 ETIARKALEQE 170 (172)
T ss_pred HHHHHHHHhcc
Confidence 99999887753
No 110
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.95 E-value=1.3e-27 Score=166.65 Aligned_cols=152 Identities=13% Similarity=-0.001 Sum_probs=113.3
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEEC--CEEEEEEEcCCCCCchh--------hHHhhccCCCEE
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQYK--NVIFTVWDVGGQEKLRP--------LWRHYFNNTDGL 64 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~--------~~~~~~~~~~~i 64 (169)
+++.+++|||||+++| ...+.||.+.++ ..+..+ .+.+++|||||.+.+.. .....++.+|++
T Consensus 5 ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~i 84 (198)
T cd04142 5 VLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAF 84 (198)
T ss_pred EECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEE
Confidence 6789999999999976 456778887543 233343 47889999999765421 133457899999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhcCC--CCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCC
Q 030931 65 IYVVDSLDRERIGKAKQEFQAIIKDP--FMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGD 140 (169)
Q Consensus 65 i~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 140 (169)
|+|||++++++|+.+..|++.+++.. ...++|+++|+||+|+.+.. ..++...... +..+++|++|||++|.
T Consensus 85 ilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~e~Sak~g~ 160 (198)
T cd04142 85 ILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVR----KSWKCGYLECSAKYNW 160 (198)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHH----HhcCCcEEEecCCCCC
Confidence 99999999999999999998887643 23579999999999995432 2222211111 1235679999999999
Q ss_pred CHHHHHHHHHHHHHhhh
Q 030931 141 GLYEGLDWLASTLKEMR 157 (169)
Q Consensus 141 gi~~~~~~l~~~~~~~~ 157 (169)
|++++|+.++..+..+.
T Consensus 161 ~v~~lf~~i~~~~~~~~ 177 (198)
T cd04142 161 HILLLFKELLISATTRG 177 (198)
T ss_pred CHHHHHHHHHHHhhccC
Confidence 99999999998777654
No 111
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.95 E-value=1.8e-28 Score=167.85 Aligned_cols=149 Identities=15% Similarity=0.126 Sum_probs=108.5
Q ss_pred CccccCCCCCceeeeec-----eeeeeeeeeEEE-EEEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNV-EKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~-~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
++++.+|+|||||+++| ...+.||....+ ..+.. ..+++++|||||++++..++..+++++|++|+|||+++
T Consensus 4 ~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~ 83 (173)
T cd04130 4 VLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVN 83 (173)
T ss_pred EEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEECCC
Confidence 36789999999999865 556677764222 22333 45789999999999999999999999999999999999
Q ss_pred hhhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---------HhHHHhhhCCCCCCCce-eEEEEeeeccCCC
Q 030931 73 RERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMT---------PMEVCEGLGLFDLKNRK-WHIQGTCALKGDG 141 (169)
Q Consensus 73 ~~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g 141 (169)
+++|+.+. .|+..+... .++.|+++++||+|+..... ...+............+ .+++++||++|.|
T Consensus 84 ~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~ 161 (173)
T cd04130 84 PSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKN 161 (173)
T ss_pred HHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence 99999885 587777542 24799999999999864211 00000000000111223 3799999999999
Q ss_pred HHHHHHHHHH
Q 030931 142 LYEGLDWLAS 151 (169)
Q Consensus 142 i~~~~~~l~~ 151 (169)
++++|+.++.
T Consensus 162 v~~lf~~~~~ 171 (173)
T cd04130 162 LKEVFDTAIL 171 (173)
T ss_pred HHHHHHHHHh
Confidence 9999998864
No 112
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.95 E-value=2.4e-27 Score=160.50 Aligned_cols=147 Identities=23% Similarity=0.278 Sum_probs=116.3
Q ss_pred CccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931 1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL 71 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~ 71 (169)
++++.+++|||||++++ .+.+.||.+..+ ..+.. ..+++.+||+||++++...+..++++++++++|+|++
T Consensus 5 ~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~ 84 (163)
T cd01860 5 VLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDIT 84 (163)
T ss_pred EEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECc
Confidence 36778999999999976 334667777433 33444 4688999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHH
Q 030931 72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149 (169)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 149 (169)
+.+++.....|+..+..... ++.|+++++||+|+.... +..+..... ...+++++++||++|.|+.++|+++
T Consensus 85 ~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~l~~~l 158 (163)
T cd01860 85 SEESFEKAKSWVKELQRNAS-PNIIIALVGNKADLESKRQVSTEEAQEYA-----DENGLLFFETSAKTGENVNELFTEI 158 (163)
T ss_pred CHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccCcCCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHHHHHH
Confidence 99999999999998866443 679999999999986422 233322221 1223679999999999999999999
Q ss_pred HHHH
Q 030931 150 ASTL 153 (169)
Q Consensus 150 ~~~~ 153 (169)
++.+
T Consensus 159 ~~~l 162 (163)
T cd01860 159 AKKL 162 (163)
T ss_pred HHHh
Confidence 9875
No 113
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.95 E-value=3.4e-28 Score=165.15 Aligned_cols=148 Identities=16% Similarity=0.112 Sum_probs=110.3
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEE-EE--EEECCEEEEEEEcCCCCC-chhhHHhhccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV-EK--VQYKNVIFTVWDVGGQEK-LRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~-~~--~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
+++.+|+|||||++++ .+.+.||.+..+ .. ++...+.+++||+||+++ +......+++.+|++|+|||+++
T Consensus 4 vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~ 83 (165)
T cd04146 4 VLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITD 83 (165)
T ss_pred EECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCC
Confidence 6778999999999976 455667665322 22 333567899999999986 34567788999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCC-CCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccC-CCHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPF-MLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKG-DGLYEGLDW 148 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~gi~~~~~~ 148 (169)
+++|+.+..|+..+..... ..+.|+++|+||+|+.... +.++... +. ...+.+|+++||++| .|++++|.+
T Consensus 84 ~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~~----~~~~~~~~e~Sa~~~~~~v~~~f~~ 158 (165)
T cd04146 84 RSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEK-LA----SELGCLFFEVSAAEDYDGVHSVFHE 158 (165)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHH-HH----HHcCCEEEEeCCCCCchhHHHHHHH
Confidence 9999999988877755332 3579999999999985432 2222111 11 223357999999999 599999999
Q ss_pred HHHHHH
Q 030931 149 LASTLK 154 (169)
Q Consensus 149 l~~~~~ 154 (169)
+++.+.
T Consensus 159 l~~~~~ 164 (165)
T cd04146 159 LCREVR 164 (165)
T ss_pred HHHHHh
Confidence 998664
No 114
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.95 E-value=4.2e-27 Score=159.25 Aligned_cols=150 Identities=15% Similarity=0.150 Sum_probs=117.2
Q ss_pred CccccCCCCCceeeeec-----eeeeeeeeeEEEEE---EEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK---VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
++.+.+|+|||||++++ ...+.||.+..+.. ++.+.+.+.+||+||++.+..++..+++.++++++|+|+++
T Consensus 4 ~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 83 (164)
T cd04139 4 IVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITD 83 (164)
T ss_pred EEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCC
Confidence 36789999999999976 34556666543322 23356889999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 150 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 150 (169)
+.+|.....|+..+.+.....+.|+++|+||+|+.+. ....+..... ...+.+++++||++|+|++++|+++.
T Consensus 84 ~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~ 158 (164)
T cd04139 84 MESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLA-----RQWGVPYVETSAKTRQNVEKAFYDLV 158 (164)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHH-----HHhCCeEEEeeCCCCCCHHHHHHHHH
Confidence 9999999999988877544468999999999999652 2222211111 12335799999999999999999999
Q ss_pred HHHHh
Q 030931 151 STLKE 155 (169)
Q Consensus 151 ~~~~~ 155 (169)
+.+.+
T Consensus 159 ~~~~~ 163 (164)
T cd04139 159 REIRQ 163 (164)
T ss_pred HHHHh
Confidence 87653
No 115
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.95 E-value=1.7e-27 Score=168.79 Aligned_cols=150 Identities=15% Similarity=0.054 Sum_probs=112.9
Q ss_pred CccccCCCCCceeeeece------eeeeeeee--EEEEEEEE--CCEEEEEEEcCCCCCchhhHHhhcc-CCCEEEEEEE
Q 030931 1 MLRVKQPYCTSCTLVKFY------LLFLLLVR--FNVEKVQY--KNVIFTVWDVGGQEKLRPLWRHYFN-NTDGLIYVVD 69 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f~------~~~~~t~~--~~~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~-~~~~ii~v~d 69 (169)
++++.+|+|||||+++|. ..+.||.+ .....+.. ..+.+.+|||+|++ ......+++ ++|++++|||
T Consensus 4 ~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iilV~d 81 (221)
T cd04148 4 VMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVVVYS 81 (221)
T ss_pred EEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEEEEE
Confidence 367899999999999882 45556664 33333443 67889999999998 333455667 9999999999
Q ss_pred CCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHH
Q 030931 70 SLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD 147 (169)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 147 (169)
++++.+|+.+.+|+..+.+.....+.|+++|+||+|+.... ..++. ..+ ....+++++++||++|.|++++|+
T Consensus 82 ~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~-~~~----a~~~~~~~~e~SA~~~~gv~~l~~ 156 (221)
T cd04148 82 VTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEG-RAC----AVVFDCKFIETSAGLQHNVDELLE 156 (221)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHH-HHH----HHHcCCeEEEecCCCCCCHHHHHH
Confidence 99999999999999888665444689999999999986432 11211 111 122345799999999999999999
Q ss_pred HHHHHHHhhh
Q 030931 148 WLASTLKEMR 157 (169)
Q Consensus 148 ~l~~~~~~~~ 157 (169)
+++..+....
T Consensus 157 ~l~~~~~~~~ 166 (221)
T cd04148 157 GIVRQIRLRR 166 (221)
T ss_pred HHHHHHHhhh
Confidence 9999887544
No 116
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.95 E-value=6.8e-27 Score=162.07 Aligned_cols=151 Identities=19% Similarity=0.170 Sum_probs=125.9
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEE---EEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE---KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR 73 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 73 (169)
+++.+|+|||+|..+| .+.|.||++..+. .++.+...+.|+||+|++.+..+...++++++++++||+++++
T Consensus 8 vlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~ 87 (196)
T KOG0395|consen 8 VLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDR 87 (196)
T ss_pred EECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCH
Confidence 5789999999999976 7889999985432 3455788999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931 74 ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS 151 (169)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (169)
.+|+.+..++..+++.......|+++||||+|+... ++.++-. .+ ....+++|+|+||+.+.+++++|..+++
T Consensus 88 ~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~-~l----a~~~~~~f~E~Sak~~~~v~~~F~~L~r 162 (196)
T KOG0395|consen 88 SSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGK-AL----ARSWGCAFIETSAKLNYNVDEVFYELVR 162 (196)
T ss_pred HHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHH-HH----HHhcCCcEEEeeccCCcCHHHHHHHHHH
Confidence 999999999999977666667999999999999763 2323211 11 2445567999999999999999999999
Q ss_pred HHHhhh
Q 030931 152 TLKEMR 157 (169)
Q Consensus 152 ~~~~~~ 157 (169)
.+....
T Consensus 163 ~~~~~~ 168 (196)
T KOG0395|consen 163 EIRLPR 168 (196)
T ss_pred HHHhhh
Confidence 888743
No 117
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.95 E-value=1.1e-27 Score=163.89 Aligned_cols=151 Identities=16% Similarity=0.148 Sum_probs=110.5
Q ss_pred CccccCCCCCceeeeec-----eeeeeeeeeEEE-EEEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNV-EKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~-~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
++++.+|+|||||+++| .+.+.||.+..+ ..+.. ..+.+++|||+|++.+..++..+++.++++++|||+++
T Consensus 4 ~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~ 83 (174)
T cd04135 4 VVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVN 83 (174)
T ss_pred EEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEECCC
Confidence 46789999999999976 445667766332 23333 35678899999999999999999999999999999999
Q ss_pred hhhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH---------HHhhhCCCCCCCce-eEEEEeeeccCCC
Q 030931 73 RERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME---------VCEGLGLFDLKNRK-WHIQGTCALKGDG 141 (169)
Q Consensus 73 ~~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~---------~~~~~~~~~~~~~~-~~~~~~Sa~~~~g 141 (169)
+.+|+.+. .|+..+... .++.|+++++||+|+.+.....+ +....+.......+ .++++|||++|.|
T Consensus 84 ~~s~~~~~~~~~~~l~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~g 161 (174)
T cd04135 84 PASFQNVKEEWVPELKEY--APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQKG 161 (174)
T ss_pred HHHHHHHHHHHHHHHHhh--CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCCC
Confidence 99999886 566666433 46899999999999854321111 00000000111222 3699999999999
Q ss_pred HHHHHHHHHHHH
Q 030931 142 LYEGLDWLASTL 153 (169)
Q Consensus 142 i~~~~~~l~~~~ 153 (169)
++++|+.++..+
T Consensus 162 i~~~f~~~~~~~ 173 (174)
T cd04135 162 LKTVFDEAILAI 173 (174)
T ss_pred HHHHHHHHHHHh
Confidence 999999998865
No 118
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.95 E-value=5.6e-27 Score=163.73 Aligned_cols=151 Identities=13% Similarity=0.101 Sum_probs=115.8
Q ss_pred CccccCCCCCceeeeec-----eeeeeeeee-EEEEEEEECC--EEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 1 MLRVKQPYCTSCTLVKF-----YLLFLLLVR-FNVEKVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~-~~~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
++++.+|+|||||+++| .+.+.+|.+ .....+..++ +++++||++|++.+..++..+++.+|++++|||+++
T Consensus 3 ~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~ 82 (198)
T cd04147 3 VFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDD 82 (198)
T ss_pred EEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCC
Confidence 36789999999999987 334455554 3333445544 789999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC-C--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA-M--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 149 (169)
+.+++.+..|+..+.+.....+.|+++|+||+|+... . ...+..+... ...+.+++++||++|.|++++|+++
T Consensus 83 ~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~~g~gv~~l~~~l 158 (198)
T cd04147 83 PESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVE----LDWNCGFVETSAKDNENVLEVFKEL 158 (198)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHH----hhcCCcEEEecCCCCCCHHHHHHHH
Confidence 9999999999888877544457999999999998542 1 1222211111 1123468999999999999999999
Q ss_pred HHHHHh
Q 030931 150 ASTLKE 155 (169)
Q Consensus 150 ~~~~~~ 155 (169)
.+.+..
T Consensus 159 ~~~~~~ 164 (198)
T cd04147 159 LRQANL 164 (198)
T ss_pred HHHhhc
Confidence 987763
No 119
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.94 E-value=6.6e-27 Score=160.15 Aligned_cols=151 Identities=16% Similarity=0.199 Sum_probs=110.9
Q ss_pred CccccCCCCCceeeeec-----eeeeeeeeeEEE-EEEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNV-EKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~-~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
++++.+|+|||||+++| .+.+.||.+..+ ..+.. ..+.+.+|||+|++.+...+..+++++|++++|||+++
T Consensus 5 ~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~ 84 (175)
T cd01870 5 VIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDS 84 (175)
T ss_pred EEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEECCC
Confidence 36789999999999976 456777777543 23444 45788999999999999888889999999999999999
Q ss_pred hhhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhC--------CCCCCC-ceeEEEEeeeccCCC
Q 030931 73 RERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMTP-MEVCEGLG--------LFDLKN-RKWHIQGTCALKGDG 141 (169)
Q Consensus 73 ~~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~~~--------~~~~~~-~~~~~~~~Sa~~~~g 141 (169)
+++|+.+. .|...+.+. ..+.|+++|+||+|+...... .++..... ...... ..+++++|||++|.|
T Consensus 85 ~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 162 (175)
T cd01870 85 PDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKEG 162 (175)
T ss_pred HHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCcC
Confidence 99998886 477766542 247899999999998643211 11110000 000011 124799999999999
Q ss_pred HHHHHHHHHHHH
Q 030931 142 LYEGLDWLASTL 153 (169)
Q Consensus 142 i~~~~~~l~~~~ 153 (169)
++++|+++++.+
T Consensus 163 v~~lf~~l~~~~ 174 (175)
T cd01870 163 VREVFEMATRAA 174 (175)
T ss_pred HHHHHHHHHHHh
Confidence 999999998754
No 120
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.94 E-value=6e-27 Score=158.10 Aligned_cols=146 Identities=22% Similarity=0.245 Sum_probs=112.3
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEE--EEEEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFN--VEKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~--~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
+++.+|+|||||+++| .+.+.+|.+.. ...+.. ..+.+.+||++|++.+..+++.+++.++++++|||+++
T Consensus 5 i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 84 (162)
T cd04123 5 LLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITD 84 (162)
T ss_pred EECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCC
Confidence 5789999999999976 23444454432 233333 45679999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 150 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 150 (169)
.++++....|+.++..... .+.|+++++||+|+.... ...+..... ...+.+++++||+++.|++++++++.
T Consensus 85 ~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~gi~~~~~~l~ 158 (162)
T cd04123 85 ADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEYA-----KSVGAKHFETSAKTGKGIEELFLSLA 158 (162)
T ss_pred HHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999888765432 379999999999987432 222222221 22345689999999999999999998
Q ss_pred HHH
Q 030931 151 STL 153 (169)
Q Consensus 151 ~~~ 153 (169)
+.+
T Consensus 159 ~~~ 161 (162)
T cd04123 159 KRM 161 (162)
T ss_pred HHh
Confidence 765
No 121
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.94 E-value=2.9e-26 Score=162.03 Aligned_cols=149 Identities=18% Similarity=0.224 Sum_probs=121.3
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEEEEEE----CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEKVQY----KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
|++..|+|||||++++ .+.+.||++.++....+ +.+.+++|||+|++.+..++..++++++++++|||+++
T Consensus 14 liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 93 (215)
T PTZ00132 14 LVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTS 93 (215)
T ss_pred EECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcC
Confidence 6789999999999865 56788999987765433 67999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAST 152 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 152 (169)
..+|..+..|+..+.+.. .+.|+++++||+|+.+.....+.... ....++.++++||++|.|+++.|.++++.
T Consensus 94 ~~s~~~~~~~~~~i~~~~--~~~~i~lv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~e~Sa~~~~~v~~~f~~ia~~ 166 (215)
T PTZ00132 94 RITYKNVPNWHRDIVRVC--ENIPIVLVGNKVDVKDRQVKARQITF-----HRKKNLQYYDISAKSNYNFEKPFLWLARR 166 (215)
T ss_pred HHHHHHHHHHHHHHHHhC--CCCCEEEEEECccCccccCCHHHHHH-----HHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 999999999998886533 57899999999998643221221111 12344679999999999999999999998
Q ss_pred HHhhh
Q 030931 153 LKEMR 157 (169)
Q Consensus 153 ~~~~~ 157 (169)
+....
T Consensus 167 l~~~p 171 (215)
T PTZ00132 167 LTNDP 171 (215)
T ss_pred Hhhcc
Confidence 87654
No 122
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.94 E-value=4.3e-26 Score=156.85 Aligned_cols=154 Identities=17% Similarity=0.200 Sum_probs=119.6
Q ss_pred CccccCCCCCceeeeece-----eeeeeeeeEE-EEEEEEC--CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 1 MLRVKQPYCTSCTLVKFY-----LLFLLLVRFN-VEKVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f~-----~~~~~t~~~~-~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
+|.+.+|+|||||++++. ..+.||.+.. ...+..+ .+.+++||+||++++...+..++..++++++|||.++
T Consensus 5 ~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 84 (180)
T cd04137 5 AVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTS 84 (180)
T ss_pred EEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCC
Confidence 367899999999999873 4455666533 3334443 4678999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 150 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 150 (169)
..+++.+..|+..+++.....+.|+++++||+|+.... ...+... +. +..+++++++||+++.|+.++|.++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~gv~~l~~~l~ 159 (180)
T cd04137 85 RKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKE-LA----ESWGAAFLESSARENENVEEAFELLI 159 (180)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHH-HH----HHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999888875545678999999999986422 2222111 11 12235799999999999999999999
Q ss_pred HHHHhhhcc
Q 030931 151 STLKEMRAA 159 (169)
Q Consensus 151 ~~~~~~~~~ 159 (169)
+.+......
T Consensus 160 ~~~~~~~~~ 168 (180)
T cd04137 160 EEIEKVENP 168 (180)
T ss_pred HHHHHhcCC
Confidence 988876543
No 123
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.94 E-value=1.9e-26 Score=156.96 Aligned_cols=147 Identities=18% Similarity=0.230 Sum_probs=112.4
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEEC--CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
+++.+|+|||||++++ .+.+.+|++..+ ..+... .+.+.+||++|++.+...+..+++.++++++|||+++
T Consensus 12 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~ 91 (169)
T cd04114 12 LIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITC 91 (169)
T ss_pred EECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcC
Confidence 5779999999999987 345566666433 334444 4778999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS 151 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (169)
.++++.+..|+..+.... ..+.|+++++||+|+.+.... .+....+. .....+++++||++|.|+.++|+++.+
T Consensus 92 ~~s~~~~~~~~~~l~~~~-~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~~l~~~i~~ 166 (169)
T cd04114 92 EESFRCLPEWLREIEQYA-NNKVITILVGNKIDLAERREVSQQRAEEFS----DAQDMYYLETSAKESDNVEKLFLDLAC 166 (169)
T ss_pred HHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHH----HHcCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 999999989987764422 246999999999998643221 12222221 112256999999999999999999987
Q ss_pred HH
Q 030931 152 TL 153 (169)
Q Consensus 152 ~~ 153 (169)
.+
T Consensus 167 ~~ 168 (169)
T cd04114 167 RL 168 (169)
T ss_pred Hh
Confidence 64
No 124
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=5.3e-27 Score=154.30 Aligned_cols=156 Identities=31% Similarity=0.552 Sum_probs=139.3
Q ss_pred CccccCCCCCceeeeec------------eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEE
Q 030931 1 MLRVKQPYCTSCTLVKF------------YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV 68 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f------------~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~ 68 (169)
||++=+.+|||+++.+. ...-.||+|.+..++...+..+.+||.+||+..+++|..||..||++|+++
T Consensus 21 lIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~vi 100 (197)
T KOG0076|consen 21 LILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVI 100 (197)
T ss_pred eeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChHHHHHHHHHHHHHhceeEEee
Confidence 56778899999999953 356689999999999999999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCC-CCCCCceeEEEEeeeccCCCHHHHHH
Q 030931 69 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGL-FDLKNRKWHIQGTCALKGDGLYEGLD 147 (169)
Q Consensus 69 d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Sa~~~~gi~~~~~ 147 (169)
|++++++|+.....++++.......+.|+++.+||.|+.+.....++...++. .....+..++.++||.+|+||++...
T Consensus 101 Da~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~ 180 (197)
T KOG0076|consen 101 DATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGIE 180 (197)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhhhcccHHHHHH
Confidence 99999999999999999988888889999999999999988888888777763 22245667899999999999999999
Q ss_pred HHHHHHHhh
Q 030931 148 WLASTLKEM 156 (169)
Q Consensus 148 ~l~~~~~~~ 156 (169)
|+...+.+.
T Consensus 181 w~v~~~~kn 189 (197)
T KOG0076|consen 181 WLVKKLEKN 189 (197)
T ss_pred HHHHHHhhc
Confidence 999988877
No 125
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.94 E-value=5.3e-26 Score=152.57 Aligned_cols=144 Identities=21% Similarity=0.285 Sum_probs=115.0
Q ss_pred CccccCCCCCceeeeec-----eeeeeeeeeEEEEEE--EE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931 1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEKV--QY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL 71 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~~--~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~ 71 (169)
++++.+++|||||++++ .+.+.+|.+.+.... .. ..+.+.+||+||++.+...+..+++++|++++|+|++
T Consensus 4 ~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 83 (159)
T cd00154 4 VLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDIT 83 (159)
T ss_pred EEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECC
Confidence 36789999999999976 444567777665543 33 4588999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC--CCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHH
Q 030931 72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK--GAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149 (169)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 149 (169)
+++++..+..|+..+.... ..+.|+++++||+|+. .....+++.+... ..+.+++++||+++.|++++|+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~~~~i 157 (159)
T cd00154 84 NRESFENLDKWLKELKEYA-PENIPIILVGNKIDLEDQRQVSTEEAQQFAK-----ENGLLFFETSAKTGENVEELFQSL 157 (159)
T ss_pred CHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccccccccccHHHHHHHHH-----HcCCeEEEEecCCCCCHHHHHHHH
Confidence 9999999999998886643 2579999999999995 3334444433222 245679999999999999999998
Q ss_pred H
Q 030931 150 A 150 (169)
Q Consensus 150 ~ 150 (169)
.
T Consensus 158 ~ 158 (159)
T cd00154 158 A 158 (159)
T ss_pred h
Confidence 6
No 126
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.94 E-value=2e-26 Score=156.73 Aligned_cols=152 Identities=11% Similarity=0.017 Sum_probs=107.4
Q ss_pred CccccCCCCCceeeeece-----eeeeeeeeEEEEE--EEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931 1 MLRVKQPYCTSCTLVKFY-----LLFLLLVRFNVEK--VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR 73 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f~-----~~~~~t~~~~~~~--~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 73 (169)
++++.+|+|||||+++|. +.+.++.+..... +....+.+++|||||++.+...+..+++.++++++|||++++
T Consensus 4 ~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~ 83 (166)
T cd01893 4 VLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRP 83 (166)
T ss_pred EEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCH
Confidence 367899999999999872 2222222211121 233678999999999998888888889999999999999999
Q ss_pred hhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCC-Cce-eEEEEeeeccCCCHHHHHHHHH
Q 030931 74 ERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLK-NRK-WHIQGTCALKGDGLYEGLDWLA 150 (169)
Q Consensus 74 ~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~Sa~~~~gi~~~~~~l~ 150 (169)
.+++.+. .|+..+.... .+.|+++|+||+|+.+............. ... ... .++++|||++|.|++++|+.+.
T Consensus 84 ~s~~~~~~~~~~~i~~~~--~~~pviiv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~ 160 (166)
T cd01893 84 STLERIRTKWLPLIRRLG--VKVPIILVGNKSDLRDGSSQAGLEEEMLP-IMNEFREIETCVECSAKTLINVSEVFYYAQ 160 (166)
T ss_pred HHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhcccccchhHHHHHHHH-HHHHHhcccEEEEeccccccCHHHHHHHHH
Confidence 9999986 5666664432 47999999999999764332111111000 000 011 2699999999999999999998
Q ss_pred HHHHh
Q 030931 151 STLKE 155 (169)
Q Consensus 151 ~~~~~ 155 (169)
+.+.+
T Consensus 161 ~~~~~ 165 (166)
T cd01893 161 KAVLH 165 (166)
T ss_pred HHhcC
Confidence 87653
No 127
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.93 E-value=4.1e-26 Score=155.48 Aligned_cols=149 Identities=19% Similarity=0.190 Sum_probs=108.3
Q ss_pred CccccCCCCCceeeeece-----eeeeeeeeEEEE---EEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 1 MLRVKQPYCTSCTLVKFY-----LLFLLLVRFNVE---KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f~-----~~~~~t~~~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
++++.+|+|||||+++|. ..+.||...... ......+.+++||+||++.+...+..+++.+|++++|||+++
T Consensus 4 ~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 83 (171)
T cd00157 4 VVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDS 83 (171)
T ss_pred EEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEECCC
Confidence 467899999999999874 344566653322 223357889999999999988888888999999999999999
Q ss_pred hhhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH--------HHhhhCCCCCCCcee-EEEEeeeccCCCH
Q 030931 73 RERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME--------VCEGLGLFDLKNRKW-HIQGTCALKGDGL 142 (169)
Q Consensus 73 ~~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~--------~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi 142 (169)
+.+|.... .|+..+.... .+.|+++|+||+|+........ +............+. +++++||++|.|+
T Consensus 84 ~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 161 (171)
T cd00157 84 PSSFENVKTKWIPEIRHYC--PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQEGV 161 (171)
T ss_pred HHHHHHHHHHHHHHHHhhC--CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCCH
Confidence 99988765 4666664432 4799999999999875432210 001111111122233 7999999999999
Q ss_pred HHHHHHHHH
Q 030931 143 YEGLDWLAS 151 (169)
Q Consensus 143 ~~~~~~l~~ 151 (169)
+++|+++++
T Consensus 162 ~~l~~~i~~ 170 (171)
T cd00157 162 KEVFEEAIR 170 (171)
T ss_pred HHHHHHHhh
Confidence 999999875
No 128
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.93 E-value=3.7e-26 Score=158.25 Aligned_cols=156 Identities=15% Similarity=0.144 Sum_probs=112.3
Q ss_pred CccccCCCCCceeeeec-----eeeeeeeeeEEEE-EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
++++..|+|||||++++ .+.+.||....+. .+.. ..+.+.+||++|++.+...++.+++.++++++|||+++
T Consensus 5 ~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~ 84 (187)
T cd04129 5 VIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDT 84 (187)
T ss_pred EEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEECCC
Confidence 36789999999999986 3455566554432 2333 34678999999999888777788899999999999999
Q ss_pred hhhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh-H------HHhhhCCCCCCCce-eEEEEeeeccCCCHH
Q 030931 73 RERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM-E------VCEGLGLFDLKNRK-WHIQGTCALKGDGLY 143 (169)
Q Consensus 73 ~~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-~------~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~ 143 (169)
.++|+.+. .|+..+.... ++.|+++|+||+|+.+..... + +.........+..+ .+|++|||++|.|++
T Consensus 85 ~~s~~~~~~~~~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 162 (187)
T cd04129 85 PDSLENVRTKWIEEVRRYC--PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEGVD 162 (187)
T ss_pred HHHHHHHHHHHHHHHHHhC--CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCHH
Confidence 99999987 5888775433 479999999999985321100 0 00000000011222 369999999999999
Q ss_pred HHHHHHHHHHHhhhc
Q 030931 144 EGLDWLASTLKEMRA 158 (169)
Q Consensus 144 ~~~~~l~~~~~~~~~ 158 (169)
++|+++.+.+...+.
T Consensus 163 ~~f~~l~~~~~~~~~ 177 (187)
T cd04129 163 DVFEAATRAALLVRK 177 (187)
T ss_pred HHHHHHHHHHhcccC
Confidence 999999987776553
No 129
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.93 E-value=5.4e-26 Score=153.13 Aligned_cols=147 Identities=18% Similarity=0.149 Sum_probs=113.8
Q ss_pred CccccCCCCCceeeeec-----eeeeeeeeeEE-EEEEEEC--CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFN-VEKVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~-~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
++++.+|+|||||++++ ...+.||.+.. ...+..+ .+.+++||+||++.+..++..+++.++++++|||+++
T Consensus 3 ~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 82 (160)
T cd00876 3 VVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITD 82 (160)
T ss_pred EEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCC
Confidence 36789999999999976 34555565522 2233443 5889999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 150 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 150 (169)
++++.....|+..+.........|+++++||+|+.... ..++..... ...+.+++++||+++.|++++|+++.
T Consensus 83 ~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~i~~l~~~l~ 157 (160)
T cd00876 83 RESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALA-----KEWGCPFIETSAKDNINIDEVFKLLV 157 (160)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHH-----HHcCCcEEEeccCCCCCHHHHHHHHH
Confidence 99999999998888765443589999999999987522 222222211 22235799999999999999999998
Q ss_pred HH
Q 030931 151 ST 152 (169)
Q Consensus 151 ~~ 152 (169)
+.
T Consensus 158 ~~ 159 (160)
T cd00876 158 RE 159 (160)
T ss_pred hh
Confidence 75
No 130
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.93 E-value=6e-26 Score=144.71 Aligned_cols=152 Identities=35% Similarity=0.610 Sum_probs=138.0
Q ss_pred ccccCCCCCceeeeec----eeeeeeeeeEEEEEEEE-CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhH
Q 030931 2 LRVKQPYCTSCTLVKF----YLLFLLLVRFNVEKVQY-KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERI 76 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f----~~~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~ 76 (169)
+++=+..||||++.++ .....||.|+++..+.+ +.+++++||.+|+...+..|..||.+.|++|+|+|.+|...|
T Consensus 22 llGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krf 101 (185)
T KOG0074|consen 22 LLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRF 101 (185)
T ss_pred EEecCCCcchhHHHHHccCChhhccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHhH
Confidence 3456789999999988 45678999999999999 459999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHH
Q 030931 77 GKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL 153 (169)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~ 153 (169)
+++.+.+-++++...+...|+.+.+||.|+..+...+++...+++..+..+.|++-+|||.+++|+.+..+|++...
T Consensus 102 eE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~dg~~wv~sn~ 178 (185)
T KOG0074|consen 102 EEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDGSDWVQSNP 178 (185)
T ss_pred HHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccCcchhhhcCC
Confidence 99999999999988888999999999999988888888888888877788889999999999999999999987643
No 131
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.93 E-value=2.7e-25 Score=151.52 Aligned_cols=148 Identities=20% Similarity=0.241 Sum_probs=120.7
Q ss_pred ccccCCCCCceeeee-----ceeeeeeeeeEEEE---EEE-ECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVK-----FYLLFLLLVRFNVE---KVQ-YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~-----f~~~~~~t~~~~~~---~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
|.+.+++|||+|+.. |.+.|.||+-.++. .++ ...+.+.+|||+||+.|..+++.-+.++|.++++|++.+
T Consensus 9 vVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~ 88 (198)
T KOG0393|consen 9 VVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVS 88 (198)
T ss_pred EECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEEEEEcCC
Confidence 556889999999995 57888999885543 243 567889999999999999999999999999999999999
Q ss_pred hhhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-----------------HhHHHhhhCCCCCCCceeEEEEe
Q 030931 73 RERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMT-----------------PMEVCEGLGLFDLKNRKWHIQGT 134 (169)
Q Consensus 73 ~~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~ 134 (169)
+++|+++. +|+.++.+.. ++.|+++||+|.||.+... ..++.+.++ -..|+||
T Consensus 89 p~S~~nv~~kW~pEi~~~c--p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~ig-------a~~y~Ec 159 (198)
T KOG0393|consen 89 PESFENVKSKWIPEIKHHC--PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIG-------AVKYLEC 159 (198)
T ss_pred hhhHHHHHhhhhHHHHhhC--CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhC-------cceeeee
Confidence 99999975 7999997765 7999999999999974221 122222222 1469999
Q ss_pred eeccCCCHHHHHHHHHHHHHhhhc
Q 030931 135 CALKGDGLYEGLDWLASTLKEMRA 158 (169)
Q Consensus 135 Sa~~~~gi~~~~~~l~~~~~~~~~ 158 (169)
||++..|+.++|+..+.......+
T Consensus 160 Sa~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 160 SALTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred hhhhhCCcHHHHHHHHHHHhcccc
Confidence 999999999999999998887654
No 132
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.93 E-value=2.1e-25 Score=155.63 Aligned_cols=140 Identities=17% Similarity=0.144 Sum_probs=103.9
Q ss_pred CccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEE-------CCEEEEEEEcCCCCCchhhHHhhccCCCEEEE
Q 030931 1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQY-------KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY 66 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~-------~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~ 66 (169)
+|++..|+|||||+++| .+.+.||+|.++ ..+.+ ..+.+++|||+|++++..++..++++++++|+
T Consensus 4 vlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIl 83 (202)
T cd04102 4 LVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNGIIL 83 (202)
T ss_pred EEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCEEEE
Confidence 36789999999999976 566788998544 23333 35789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhcCC------------------CCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCC
Q 030931 67 VVDSLDRERIGKAKQEFQAIIKDP------------------FMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKN 126 (169)
Q Consensus 67 v~d~~~~~~~~~~~~~~~~~~~~~------------------~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~ 126 (169)
|||++++.+|+.+..|+.++.... ...+.|+++||||.|+.+.. +....... ....+++
T Consensus 84 VyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~-~~~ia~~ 162 (202)
T cd04102 84 VHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTA-RGFVAEQ 162 (202)
T ss_pred EEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhH-hhhHHHh
Confidence 999999999999999999986531 12468999999999996532 22211111 1111234
Q ss_pred ceeEEEEeeeccCCC
Q 030931 127 RKWHIQGTCALKGDG 141 (169)
Q Consensus 127 ~~~~~~~~Sa~~~~g 141 (169)
.+.+.++.++.+...
T Consensus 163 ~~~~~i~~~c~~~~~ 177 (202)
T cd04102 163 GNAEEINLNCTNGRL 177 (202)
T ss_pred cCCceEEEecCCccc
Confidence 455677777775544
No 133
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.92 E-value=8.2e-25 Score=148.79 Aligned_cols=146 Identities=15% Similarity=0.069 Sum_probs=101.0
Q ss_pred CccccCCCCCceeeeeceeee-------eeeeeEEEEEEEECCEEEEEEEcCCCCCch---------hhHHhhccCCCEE
Q 030931 1 MLRVKQPYCTSCTLVKFYLLF-------LLLVRFNVEKVQYKNVIFTVWDVGGQEKLR---------PLWRHYFNNTDGL 64 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f~~~~-------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~~~~~~i 64 (169)
++++.+++|||||++++.... .+|.+.....+..+++++++|||||+.... .........+|++
T Consensus 4 ~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~ 83 (168)
T cd01897 4 VIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAV 83 (168)
T ss_pred EEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhccCcE
Confidence 367899999999999884322 335555555666678999999999984211 0011112336899
Q ss_pred EEEEECCChhhH--HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCH
Q 030931 65 IYVVDSLDRERI--GKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGL 142 (169)
Q Consensus 65 i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 142 (169)
++|+|+++..++ +....|+..+.... .+.|+++|+||+|+.+.....+. ..+ .....++++++||++|.|+
T Consensus 84 l~v~d~~~~~~~~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~-~~~----~~~~~~~~~~~Sa~~~~gi 156 (168)
T cd01897 84 LFLFDPSETCGYSLEEQLSLFEEIKPLF--KNKPVIVVLNKIDLLTFEDLSEI-EEE----EELEGEEVLKISTLTEEGV 156 (168)
T ss_pred EEEEeCCcccccchHHHHHHHHHHHhhc--CcCCeEEEEEccccCchhhHHHH-HHh----hhhccCceEEEEecccCCH
Confidence 999999887654 55556777664322 47999999999999654332221 111 1234567999999999999
Q ss_pred HHHHHHHHHHH
Q 030931 143 YEGLDWLASTL 153 (169)
Q Consensus 143 ~~~~~~l~~~~ 153 (169)
+++|+++.+.+
T Consensus 157 ~~l~~~l~~~~ 167 (168)
T cd01897 157 DEVKNKACELL 167 (168)
T ss_pred HHHHHHHHHHh
Confidence 99999998865
No 134
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.91 E-value=1.9e-24 Score=146.18 Aligned_cols=141 Identities=15% Similarity=0.007 Sum_probs=98.6
Q ss_pred ccccCCCCCceeeeecee----------eeeeeeeEEEEEEEEC-CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEEC
Q 030931 2 LRVKQPYCTSCTLVKFYL----------LFLLLVRFNVEKVQYK-NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDS 70 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~----------~~~~t~~~~~~~~~~~-~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~ 70 (169)
+++.+++|||||++++.. ...+|++..+..+... +..+++|||||++++......+++++|++++|+|+
T Consensus 5 i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~ 84 (164)
T cd04171 5 TAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAA 84 (164)
T ss_pred EEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEEC
Confidence 567999999999998842 1234566666666665 78999999999998877777788999999999999
Q ss_pred CC---hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC----HhHHHhhhCCCCCCCceeEEEEeeeccCCCHH
Q 030931 71 LD---RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT----PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLY 143 (169)
Q Consensus 71 ~~---~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 143 (169)
++ .++.+.+. .+ +.. ...|+++++||+|+.+... ..++.+.+... ...+++++++||++++|++
T Consensus 85 ~~~~~~~~~~~~~----~~-~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~v~ 155 (164)
T cd04171 85 DEGIMPQTREHLE----IL-ELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGT--FLADAPIFPVSAVTGEGIE 155 (164)
T ss_pred CCCccHhHHHHHH----HH-HHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhc--CcCCCcEEEEeCCCCcCHH
Confidence 76 33332221 11 111 1249999999999965321 12223333211 1134679999999999999
Q ss_pred HHHHHHHH
Q 030931 144 EGLDWLAS 151 (169)
Q Consensus 144 ~~~~~l~~ 151 (169)
++++.+.+
T Consensus 156 ~l~~~l~~ 163 (164)
T cd04171 156 ELKEYLDE 163 (164)
T ss_pred HHHHHHhh
Confidence 99998764
No 135
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.91 E-value=3.1e-24 Score=147.42 Aligned_cols=142 Identities=15% Similarity=0.126 Sum_probs=102.8
Q ss_pred ccccCCCCCceeeeecee------------eeeeee------eEEE----EEE-----EECCEEEEEEEcCCCCCchhhH
Q 030931 2 LRVKQPYCTSCTLVKFYL------------LFLLLV------RFNV----EKV-----QYKNVIFTVWDVGGQEKLRPLW 54 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~------------~~~~t~------~~~~----~~~-----~~~~~~~~i~D~~G~~~~~~~~ 54 (169)
+++..++|||||+++|.. .+.+|. |..+ ..+ +...+.+++|||||++.+..++
T Consensus 5 ~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 84 (179)
T cd01890 5 IIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFSYEV 84 (179)
T ss_pred EEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhHHHH
Confidence 678999999999998733 233322 2221 122 2357889999999999999999
Q ss_pred HhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhCCCCCCCceeEE
Q 030931 55 RHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP---MEVCEGLGLFDLKNRKWHI 131 (169)
Q Consensus 55 ~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~ 131 (169)
..+++.+|++|+|+|+++..++.....|.... . .++|+++|+||+|+.+.... .++.+.++.. ...+
T Consensus 85 ~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~-----~~~~ 154 (179)
T cd01890 85 SRSLAACEGALLLVDATQGVEAQTLANFYLAL-E----NNLEIIPVINKIDLPSADPERVKQQIEDVLGLD-----PSEA 154 (179)
T ss_pred HHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-H----cCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCC-----cccE
Confidence 99999999999999998876666655554322 1 36899999999998643211 2333333221 1248
Q ss_pred EEeeeccCCCHHHHHHHHHHHH
Q 030931 132 QGTCALKGDGLYEGLDWLASTL 153 (169)
Q Consensus 132 ~~~Sa~~~~gi~~~~~~l~~~~ 153 (169)
+++||++|.|++++|+++...+
T Consensus 155 ~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 155 ILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred EEeeccCCCCHHHHHHHHHhhC
Confidence 9999999999999999998865
No 136
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.91 E-value=2.3e-24 Score=146.81 Aligned_cols=148 Identities=21% Similarity=0.099 Sum_probs=103.7
Q ss_pred ccccCCCCCceeeeeceee-------eeeeeeEEEEEEEECCE-EEEEEEcCCCCC----chhhHHhh---ccCCCEEEE
Q 030931 2 LRVKQPYCTSCTLVKFYLL-------FLLLVRFNVEKVQYKNV-IFTVWDVGGQEK----LRPLWRHY---FNNTDGLIY 66 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~-------~~~t~~~~~~~~~~~~~-~~~i~D~~G~~~----~~~~~~~~---~~~~~~ii~ 66 (169)
+++.+++|||||++++... ..+|.......+..++. ++.+|||||+.. ...+...+ ++.+|++++
T Consensus 5 ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~ 84 (170)
T cd01898 5 LVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLH 84 (170)
T ss_pred EECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEE
Confidence 6789999999999988432 23344444445555555 999999999642 22233333 446999999
Q ss_pred EEECCCh-hhHHHHHHHHHHHhcCC-CCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHH
Q 030931 67 VVDSLDR-ERIGKAKQEFQAIIKDP-FMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 144 (169)
Q Consensus 67 v~d~~~~-~~~~~~~~~~~~~~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 144 (169)
|+|+++. .+++....|.+.+.... ...+.|+++|+||+|+.+.....+....+.. .....+++++||+++.|+.+
T Consensus 85 v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~gi~~ 161 (170)
T cd01898 85 VIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLK---ELWGKPVFPISALTGEGLDE 161 (170)
T ss_pred EEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHh---hCCCCCEEEEecCCCCCHHH
Confidence 9999998 78888888877775432 2347899999999998654333222222211 11245699999999999999
Q ss_pred HHHHHHHH
Q 030931 145 GLDWLAST 152 (169)
Q Consensus 145 ~~~~l~~~ 152 (169)
+|+++.+.
T Consensus 162 l~~~i~~~ 169 (170)
T cd01898 162 LLRKLAEL 169 (170)
T ss_pred HHHHHHhh
Confidence 99999865
No 137
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=2.6e-23 Score=154.89 Aligned_cols=152 Identities=19% Similarity=0.090 Sum_probs=111.4
Q ss_pred ccccCCCCCceeeeecee-------eeeeeeeEEEEEEEE-CCEEEEEEEcCCCCC-------chhhHHhhccCCCEEEE
Q 030931 2 LRVKQPYCTSCTLVKFYL-------LFLLLVRFNVEKVQY-KNVIFTVWDVGGQEK-------LRPLWRHYFNNTDGLIY 66 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~-------~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~-------~~~~~~~~~~~~~~ii~ 66 (169)
|++-+++|||||+++++. .+.+|...+...+.+ ....+.+||+||... ....+..+++.++++++
T Consensus 163 lVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ 242 (335)
T PRK12299 163 LVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLH 242 (335)
T ss_pred EEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEE
Confidence 466899999999998842 346677777777777 567899999999642 22233345668999999
Q ss_pred EEECCChhhHHHHHHHHHHHhcC-CCCCCCeEEEEEeCCCCCCCCCHh-HHHhhhCCCCCCCceeEEEEeeeccCCCHHH
Q 030931 67 VVDSLDRERIGKAKQEFQAIIKD-PFMLNSVILVFANKQDMKGAMTPM-EVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 144 (169)
Q Consensus 67 v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~piivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 144 (169)
|+|+++.++++....|..++... ....+.|+++|+||+|+.+..... +....+ ....+++++++||++++|+++
T Consensus 243 ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~----~~~~~~~i~~iSAktg~GI~e 318 (335)
T PRK12299 243 LVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALE----LAALGGPVFLISAVTGEGLDE 318 (335)
T ss_pred EEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHH----HHhcCCCEEEEEcCCCCCHHH
Confidence 99999887888888888877543 223478999999999986543211 111111 112235699999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030931 145 GLDWLASTLKEMR 157 (169)
Q Consensus 145 ~~~~l~~~~~~~~ 157 (169)
+++++.+.+.+.+
T Consensus 319 L~~~L~~~l~~~~ 331 (335)
T PRK12299 319 LLRALWELLEEAR 331 (335)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999887644
No 138
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.90 E-value=2.3e-23 Score=142.44 Aligned_cols=148 Identities=16% Similarity=0.040 Sum_probs=104.4
Q ss_pred ccccCCCCCceeeeeceee-------eeeeeeEEEEEEEEC-CEEEEEEEcCCCCC----chhh---HHhhccCCCEEEE
Q 030931 2 LRVKQPYCTSCTLVKFYLL-------FLLLVRFNVEKVQYK-NVIFTVWDVGGQEK----LRPL---WRHYFNNTDGLIY 66 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~-------~~~t~~~~~~~~~~~-~~~~~i~D~~G~~~----~~~~---~~~~~~~~~~ii~ 66 (169)
+++.+|+|||||++++... ..+|.......+..+ +.++.+|||||... ...+ ....++.++++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 5789999999999987433 245555555566677 89999999999732 1222 2345778999999
Q ss_pred EEECCCh------hhHHHHHHHHHHHhcCCC------CCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEe
Q 030931 67 VVDSLDR------ERIGKAKQEFQAIIKDPF------MLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGT 134 (169)
Q Consensus 67 v~d~~~~------~~~~~~~~~~~~~~~~~~------~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (169)
|+|+++. .++.....|...+..... ..+.|+++|+||+|+.......+.. ..........+++++
T Consensus 81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~~ 157 (176)
T cd01881 81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEEL---VRELALEEGAEVVPI 157 (176)
T ss_pred EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHH---HHHHhcCCCCCEEEE
Confidence 9999887 567777777666654322 2479999999999996543322221 001112334569999
Q ss_pred eeccCCCHHHHHHHHHHH
Q 030931 135 CALKGDGLYEGLDWLAST 152 (169)
Q Consensus 135 Sa~~~~gi~~~~~~l~~~ 152 (169)
||+++.|+++++++++..
T Consensus 158 Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 158 SAKTEEGLDELIRAIYEL 175 (176)
T ss_pred ehhhhcCHHHHHHHHHhh
Confidence 999999999999998764
No 139
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.89 E-value=5.4e-23 Score=138.32 Aligned_cols=141 Identities=18% Similarity=0.097 Sum_probs=99.1
Q ss_pred ccccCCCCCceeeeeceee-------eeeeeeEEEEEEEECCEEEEEEEcCCCCCchh------hHHhhcc--CCCEEEE
Q 030931 2 LRVKQPYCTSCTLVKFYLL-------FLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRP------LWRHYFN--NTDGLIY 66 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~-------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~~--~~~~ii~ 66 (169)
|++.+|+|||||++++... ...|.......+.+++..+.+|||||++.+.. ++..++. .++++++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 80 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVN 80 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEE
Confidence 5789999999999988332 22244455566777788999999999987654 3555664 9999999
Q ss_pred EEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHH
Q 030931 67 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL 146 (169)
Q Consensus 67 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 146 (169)
|+|.++.+.. ..+...+.+ .+.|+++|+||+|+.+..........+. ...+.+++++||.++.|+.+++
T Consensus 81 v~d~~~~~~~---~~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~----~~~~~~~~~iSa~~~~~~~~l~ 149 (158)
T cd01879 81 VVDATNLERN---LYLTLQLLE----LGLPVVVALNMIDEAEKRGIKIDLDKLS----ELLGVPVVPTSARKGEGIDELK 149 (158)
T ss_pred EeeCCcchhH---HHHHHHHHH----cCCCEEEEEehhhhcccccchhhHHHHH----HhhCCCeEEEEccCCCCHHHHH
Confidence 9999875432 234434322 2689999999999965432111111111 1223569999999999999999
Q ss_pred HHHHHHH
Q 030931 147 DWLASTL 153 (169)
Q Consensus 147 ~~l~~~~ 153 (169)
+++...+
T Consensus 150 ~~l~~~~ 156 (158)
T cd01879 150 DAIAELA 156 (158)
T ss_pred HHHHHHh
Confidence 9998764
No 140
>PLN00023 GTP-binding protein; Provisional
Probab=99.89 E-value=3.8e-23 Score=151.32 Aligned_cols=107 Identities=17% Similarity=0.261 Sum_probs=90.4
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEE---------------CCEEEEEEEcCCCCCchhhHHhhcc
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQY---------------KNVIFTVWDVGGQEKLRPLWRHYFN 59 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~---------------~~~~~~i~D~~G~~~~~~~~~~~~~ 59 (169)
|++..|+|||||+++| ...+.||+|.++ ..+.+ ..+.++||||+|+++|+.++..+++
T Consensus 26 LLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL~~~yyr 105 (334)
T PLN00023 26 VVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKDCRSLFYS 105 (334)
T ss_pred EECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhhhhHHhcc
Confidence 6779999999999986 456789998764 33443 2478999999999999999999999
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHhcCCC-----------CCCCeEEEEEeCCCCCC
Q 030931 60 NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPF-----------MLNSVILVFANKQDMKG 108 (169)
Q Consensus 60 ~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-----------~~~~piivv~nK~Dl~~ 108 (169)
+++++|+|||++++.+|+.+..|+..+..... ..++|+++||||+|+..
T Consensus 106 ~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~ 165 (334)
T PLN00023 106 QINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP 165 (334)
T ss_pred CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence 99999999999999999999999999875421 13589999999999964
No 141
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.89 E-value=9.5e-23 Score=138.49 Aligned_cols=147 Identities=21% Similarity=0.085 Sum_probs=101.5
Q ss_pred ccccCCCCCceeeeeceeee-------eeeeeEEEEEEEEC---CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931 2 LRVKQPYCTSCTLVKFYLLF-------LLLVRFNVEKVQYK---NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL 71 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~-------~~t~~~~~~~~~~~---~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~ 71 (169)
+++.+++|||||++++.... .+|.......+... +..+.+|||||++.+..++..+++.+|++++|+|++
T Consensus 5 iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~ 84 (168)
T cd01887 5 VMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVVAAD 84 (168)
T ss_pred EEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECC
Confidence 67799999999999873222 33444444455543 789999999999999999998999999999999998
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhh---hCCCC--CCCceeEEEEeeeccCCCHHHHH
Q 030931 72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEG---LGLFD--LKNRKWHIQGTCALKGDGLYEGL 146 (169)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~Sa~~~~gi~~~~ 146 (169)
+...-.. ...+..+ +. .+.|+++|+||+|+.+.. .+.+... +.... .....++++++||++|+|+.+++
T Consensus 85 ~~~~~~~-~~~~~~~-~~---~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 158 (168)
T cd01887 85 DGVMPQT-IEAIKLA-KA---ANVPFIVALNKIDKPNAN-PERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLL 158 (168)
T ss_pred CCccHHH-HHHHHHH-HH---cCCCEEEEEEceeccccc-HHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHH
Confidence 7432111 1112222 11 368999999999986432 2222221 11110 01234679999999999999999
Q ss_pred HHHHHHHH
Q 030931 147 DWLASTLK 154 (169)
Q Consensus 147 ~~l~~~~~ 154 (169)
+++.+...
T Consensus 159 ~~l~~~~~ 166 (168)
T cd01887 159 EAILLLAE 166 (168)
T ss_pred HHHHHhhh
Confidence 99988654
No 142
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.89 E-value=6.2e-23 Score=143.89 Aligned_cols=142 Identities=16% Similarity=0.061 Sum_probs=100.7
Q ss_pred ccccCCCCCceeeeecee-------eeeeeeeEEEEEEEECC-EEEEEEEcCCCCCc---------hhhHHhhccCCCEE
Q 030931 2 LRVKQPYCTSCTLVKFYL-------LFLLLVRFNVEKVQYKN-VIFTVWDVGGQEKL---------RPLWRHYFNNTDGL 64 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~-------~~~~t~~~~~~~~~~~~-~~~~i~D~~G~~~~---------~~~~~~~~~~~~~i 64 (169)
|++.+|+|||||++++.. .+.+|.......+.+++ ..+.+|||||.... ...+ ..+..+|++
T Consensus 46 iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~d~i 124 (204)
T cd01878 46 LVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTL-EEVAEADLL 124 (204)
T ss_pred EECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHH-HHHhcCCeE
Confidence 567999999999998743 24566666666666654 48999999997431 1111 236789999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHH
Q 030931 65 IYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 144 (169)
Q Consensus 65 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 144 (169)
++|+|++++.++.....|...+.. ....+.|+++|+||+|+.+..... .. ......+++++||+++.|+++
T Consensus 125 i~v~D~~~~~~~~~~~~~~~~l~~-~~~~~~~viiV~NK~Dl~~~~~~~---~~-----~~~~~~~~~~~Sa~~~~gi~~ 195 (204)
T cd01878 125 LHVVDASDPDYEEQIETVEKVLKE-LGAEDIPMILVLNKIDLLDDEELE---ER-----LEAGRPDAVFISAKTGEGLDE 195 (204)
T ss_pred EEEEECCCCChhhHHHHHHHHHHH-cCcCCCCEEEEEEccccCChHHHH---HH-----hhcCCCceEEEEcCCCCCHHH
Confidence 999999988887776655544422 223468999999999986542211 11 122345699999999999999
Q ss_pred HHHHHHHHH
Q 030931 145 GLDWLASTL 153 (169)
Q Consensus 145 ~~~~l~~~~ 153 (169)
+++++...+
T Consensus 196 l~~~L~~~~ 204 (204)
T cd01878 196 LLEAIEELL 204 (204)
T ss_pred HHHHHHhhC
Confidence 999998753
No 143
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.89 E-value=1.4e-25 Score=148.48 Aligned_cols=148 Identities=16% Similarity=0.197 Sum_probs=124.0
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEEE----EEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK----VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
+.++.+.||||+++|| ...|.-|+|+++.. +..+.+...+||++|++.|..+...|+++|.+.++||+-+|
T Consensus 25 ivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTD 104 (246)
T KOG4252|consen 25 IVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTD 104 (246)
T ss_pred EECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEEEEeccc
Confidence 4568999999999986 78899999987644 44578889999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 150 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 150 (169)
+.+|+.+..|..++.++. .++|.++|-||+|+.+.. +..+++... +..+..++.+|++...|+..+|..++
T Consensus 105 r~SFea~~~w~~kv~~e~--~~IPtV~vqNKIDlveds~~~~~evE~la-----k~l~~RlyRtSvked~NV~~vF~YLa 177 (246)
T KOG4252|consen 105 RYSFEATLEWYNKVQKET--ERIPTVFVQNKIDLVEDSQMDKGEVEGLA-----KKLHKRLYRTSVKEDFNVMHVFAYLA 177 (246)
T ss_pred HHHHHHHHHHHHHHHHHh--ccCCeEEeeccchhhHhhhcchHHHHHHH-----HHhhhhhhhhhhhhhhhhHHHHHHHH
Confidence 999999999999997654 689999999999997532 233333221 23345689999999999999999999
Q ss_pred HHHHhh
Q 030931 151 STLKEM 156 (169)
Q Consensus 151 ~~~~~~ 156 (169)
+.+.+.
T Consensus 178 eK~~q~ 183 (246)
T KOG4252|consen 178 EKLTQQ 183 (246)
T ss_pred HHHHHH
Confidence 877665
No 144
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.89 E-value=1.7e-22 Score=150.33 Aligned_cols=148 Identities=21% Similarity=0.097 Sum_probs=106.2
Q ss_pred ccccCCCCCceeeeeceee-------eeeeeeEEEEEEEECC-EEEEEEEcCCCCCc----hhhH---HhhccCCCEEEE
Q 030931 2 LRVKQPYCTSCTLVKFYLL-------FLLLVRFNVEKVQYKN-VIFTVWDVGGQEKL----RPLW---RHYFNNTDGLIY 66 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~-------~~~t~~~~~~~~~~~~-~~~~i~D~~G~~~~----~~~~---~~~~~~~~~ii~ 66 (169)
|++.+++|||||++++... +.+|...+...+.+.+ ..+.+||+||.... ..+. ...++.++++++
T Consensus 162 lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~ 241 (329)
T TIGR02729 162 LVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLH 241 (329)
T ss_pred EEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEE
Confidence 5678999999999988433 2456666666677766 89999999997532 1233 334567999999
Q ss_pred EEECCCh---hhHHHHHHHHHHHhcC-CCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCH
Q 030931 67 VVDSLDR---ERIGKAKQEFQAIIKD-PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGL 142 (169)
Q Consensus 67 v~d~~~~---~~~~~~~~~~~~~~~~-~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 142 (169)
|+|+++. ++++....|..++... ....+.|+++|+||+|+.+....++..+.+. +..+.+++++||++++|+
T Consensus 242 VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~----~~~~~~vi~iSAktg~GI 317 (329)
T TIGR02729 242 LIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELK----KALGKPVFPISALTGEGL 317 (329)
T ss_pred EEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHH----HHcCCcEEEEEccCCcCH
Confidence 9999876 6777777777666442 2235789999999999965433333333322 122356999999999999
Q ss_pred HHHHHHHHHHH
Q 030931 143 YEGLDWLASTL 153 (169)
Q Consensus 143 ~~~~~~l~~~~ 153 (169)
+++++++.+.+
T Consensus 318 ~eL~~~I~~~l 328 (329)
T TIGR02729 318 DELLYALAELL 328 (329)
T ss_pred HHHHHHHHHHh
Confidence 99999998765
No 145
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=7.1e-23 Score=136.71 Aligned_cols=150 Identities=18% Similarity=0.213 Sum_probs=128.4
Q ss_pred ccccCCCCCceeeee-----ceeeeeeeeeEEEEEEEE----CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVK-----FYLLFLLLVRFNVEKVQY----KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~-----f~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
|.++.|.|||+++.| |...+.||+|+....+.+ +.+++..|||+|++.+......++-++.+.|++||++.
T Consensus 15 lvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVts 94 (216)
T KOG0096|consen 15 LVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTS 94 (216)
T ss_pred EecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEEeeeee
Confidence 556899999999995 688899999988776554 56999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAST 152 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 152 (169)
+-++.++..|.+++.+.+ .++||+++|||.|..+.. ...........++++|+++||+.+.|.+..|.|+.+.
T Consensus 95 r~t~~n~~rwhrd~~rv~--~NiPiv~cGNKvDi~~r~-----~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~LarK 167 (216)
T KOG0096|consen 95 RFTYKNVPRWHRDLVRVR--ENIPIVLCGNKVDIKARK-----VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWLARK 167 (216)
T ss_pred hhhhhcchHHHHHHHHHh--cCCCeeeeccceeccccc-----cccccceeeecccceeEEeecccccccccchHHHhhh
Confidence 999999999999998866 579999999999986542 1222334446677889999999999999999999998
Q ss_pred HHhhhc
Q 030931 153 LKEMRA 158 (169)
Q Consensus 153 ~~~~~~ 158 (169)
+.....
T Consensus 168 l~G~p~ 173 (216)
T KOG0096|consen 168 LTGDPS 173 (216)
T ss_pred hcCCCC
Confidence 877654
No 146
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.88 E-value=2.8e-23 Score=137.69 Aligned_cols=127 Identities=14% Similarity=0.019 Sum_probs=86.8
Q ss_pred ccccCCCCCceeeeeceeee---eeeeeEEEEEEEECCEEEEEEEcCCCC-----CchhhHHhhccCCCEEEEEEECCCh
Q 030931 2 LRVKQPYCTSCTLVKFYLLF---LLLVRFNVEKVQYKNVIFTVWDVGGQE-----KLRPLWRHYFNNTDGLIYVVDSLDR 73 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~---~~t~~~~~~~~~~~~~~~~i~D~~G~~-----~~~~~~~~~~~~~~~ii~v~d~~~~ 73 (169)
+++.+++|||||+++|.... .+|.+. ++.. .+|||||+. .+..+.. .++++|++++|||++++
T Consensus 5 liG~~~vGKSsL~~~l~~~~~~~~~t~~~-----~~~~---~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d~~~~ 75 (142)
T TIGR02528 5 FIGSVGCGKTTLTQALQGEEILYKKTQAV-----EYND---GAIDTPGEYVENRRLYSALIV-TAADADVIALVQSATDP 75 (142)
T ss_pred EECCCCCCHHHHHHHHcCCccccccceeE-----EEcC---eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEecCCCC
Confidence 67899999999999985433 344433 2322 789999983 2333333 47899999999999998
Q ss_pred hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC-CCHhHHHhhhCCCCCCCce-eEEEEeeeccCCCHHHHHHHHH
Q 030931 74 ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA-MTPMEVCEGLGLFDLKNRK-WHIQGTCALKGDGLYEGLDWLA 150 (169)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~~~~l~ 150 (169)
.++.. ..|.... ..|+++|+||+|+.+. ...++..+.. +..+ .+++++||++|.|++++|+++.
T Consensus 76 ~s~~~-~~~~~~~-------~~p~ilv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 76 ESRFP-PGFASIF-------VKPVIGLVTKIDLAEADVDIERAKELL-----ETAGAEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred CcCCC-hhHHHhc-------cCCeEEEEEeeccCCcccCHHHHHHHH-----HHcCCCcEEEEecCCCCCHHHHHHHHh
Confidence 88754 2343321 2399999999998642 2222222211 1122 2689999999999999999874
No 147
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.88 E-value=1.6e-22 Score=134.06 Aligned_cols=146 Identities=23% Similarity=0.252 Sum_probs=108.9
Q ss_pred ccccCCCCCceeeeecee------eeeeeeeEEEEEEEEC----CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931 2 LRVKQPYCTSCTLVKFYL------LFLLLVRFNVEKVQYK----NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL 71 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~------~~~~t~~~~~~~~~~~----~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~ 71 (169)
+++.+|+|||||++++.. ...+|. .+....... ...+.+||+||+..+...+..+++.++++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 578899999999998733 333555 555554443 788999999999988888888999999999999999
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931 72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 150 (169)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 150 (169)
+..++.....|...........+.|+++++||+|+.............. .......+++++|+.++.|++++++++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~--~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQ--LAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHH--HHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 9988888887733333333446899999999999875543332210000 1123456799999999999999999975
No 148
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.88 E-value=8.2e-22 Score=132.26 Aligned_cols=140 Identities=15% Similarity=0.096 Sum_probs=96.1
Q ss_pred CccccCCCCCceeeeeceeee--------eeeeeEEEEEEEECCEEEEEEEcCCCCCchh--------hHHhhccCCCEE
Q 030931 1 MLRVKQPYCTSCTLVKFYLLF--------LLLVRFNVEKVQYKNVIFTVWDVGGQEKLRP--------LWRHYFNNTDGL 64 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f~~~~--------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~~~~i 64 (169)
.|++.+|+|||||++++.... ..|...........+..+.+|||||+..+.. .+...++.+|++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 367899999999999873221 1133344455666789999999999988654 334567899999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHH
Q 030931 65 IYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 144 (169)
Q Consensus 65 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 144 (169)
++|+|..+..+.... ++..+++. .+.|+++|+||+|+.+.....+....++. .+++++||+++.|+++
T Consensus 81 i~v~d~~~~~~~~~~--~~~~~~~~---~~~piiiv~nK~D~~~~~~~~~~~~~~~~-------~~~~~~Sa~~~~gv~~ 148 (157)
T cd01894 81 LFVVDGREGLTPADE--EIAKYLRK---SKKPVILVVNKVDNIKEEDEAAEFYSLGF-------GEPIPISAEHGRGIGD 148 (157)
T ss_pred EEEEeccccCCccHH--HHHHHHHh---cCCCEEEEEECcccCChHHHHHHHHhcCC-------CCeEEEecccCCCHHH
Confidence 999999765433322 22233332 25899999999998754222111111111 1489999999999999
Q ss_pred HHHHHHHH
Q 030931 145 GLDWLAST 152 (169)
Q Consensus 145 ~~~~l~~~ 152 (169)
+|+++++.
T Consensus 149 l~~~l~~~ 156 (157)
T cd01894 149 LLDAILEL 156 (157)
T ss_pred HHHHHHhh
Confidence 99999875
No 149
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=4.6e-22 Score=155.01 Aligned_cols=142 Identities=18% Similarity=0.134 Sum_probs=97.8
Q ss_pred ccccCCCCCceeeeeceeee----eee----eeEEEEEEEECCEEEEEEEcCCCCC--------chhhHHhhccCCCEEE
Q 030931 2 LRVKQPYCTSCTLVKFYLLF----LLL----VRFNVEKVQYKNVIFTVWDVGGQEK--------LRPLWRHYFNNTDGLI 65 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~----~~t----~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~~~~~ii 65 (169)
|++.+++|||||++++.... .++ .......+.+++..+.+|||||.+. +...+..+++.||++|
T Consensus 43 IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il 122 (472)
T PRK03003 43 VVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVL 122 (472)
T ss_pred EEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEE
Confidence 57799999999999884321 122 2233445566788999999999763 3344566789999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHH
Q 030931 66 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG 145 (169)
Q Consensus 66 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 145 (169)
+|+|+++..++.. ..+...+ +. .+.|+++|+||+|+..... +........ .+ ..+++||++|.|++++
T Consensus 123 ~VvD~~~~~s~~~-~~i~~~l-~~---~~~piilV~NK~Dl~~~~~--~~~~~~~~g----~~-~~~~iSA~~g~gi~eL 190 (472)
T PRK03003 123 FVVDATVGATATD-EAVARVL-RR---SGKPVILAANKVDDERGEA--DAAALWSLG----LG-EPHPVSALHGRGVGDL 190 (472)
T ss_pred EEEECCCCCCHHH-HHHHHHH-HH---cCCCEEEEEECccCCccch--hhHHHHhcC----CC-CeEEEEcCCCCCcHHH
Confidence 9999998765543 2233222 21 3789999999999864321 111111111 11 2579999999999999
Q ss_pred HHHHHHHHHh
Q 030931 146 LDWLASTLKE 155 (169)
Q Consensus 146 ~~~l~~~~~~ 155 (169)
|++++..+.+
T Consensus 191 ~~~i~~~l~~ 200 (472)
T PRK03003 191 LDAVLAALPE 200 (472)
T ss_pred HHHHHhhccc
Confidence 9999998865
No 150
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.88 E-value=1.1e-21 Score=131.24 Aligned_cols=144 Identities=17% Similarity=0.159 Sum_probs=105.9
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEEE--EEECC--EEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK--VQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~--~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
+.+.+|+|||||++++ ...+.++.+.+... +..++ +.+.+||+||+..+..++..+++.+++++.++|+..
T Consensus 6 ~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~ 85 (161)
T TIGR00231 6 IVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVI 85 (161)
T ss_pred EECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEee
Confidence 5678999999999976 23334555544433 55566 889999999999999999999999999999999987
Q ss_pred h-hhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931 73 R-ERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 150 (169)
Q Consensus 73 ~-~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 150 (169)
. .++.... .|...+.+.... +.|+++++||+|+............+.. ....+++++||++|.|+.++|+++-
T Consensus 86 ~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~~~~~~~~~~~~----~~~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 86 LVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRDAKLKTHVAFLFAK----LNGEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred eehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCcchhhHHHHHHHhh----ccCCceEEeecCCCCCHHHHHHHhh
Confidence 7 6666555 555555443322 7899999999999654322333333321 2234599999999999999999863
No 151
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.87 E-value=5.1e-22 Score=138.29 Aligned_cols=150 Identities=16% Similarity=0.111 Sum_probs=100.6
Q ss_pred ccccCCCCCceeeeecee---e----e------------eeeeeE----EEEEEEECCEEEEEEEcCCCCCchhhHHhhc
Q 030931 2 LRVKQPYCTSCTLVKFYL---L----F------------LLLVRF----NVEKVQYKNVIFTVWDVGGQEKLRPLWRHYF 58 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~---~----~------------~~t~~~----~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 58 (169)
+++..++|||||+++|.. . + .++.|. ....+..+.+++++|||||+++|..++..++
T Consensus 7 ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~ 86 (194)
T cd01891 7 IIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVERVL 86 (194)
T ss_pred EEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHHHHH
Confidence 578999999999998732 1 1 112232 2345677899999999999999999999999
Q ss_pred cCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhC-C-CCCCCceeEEEE
Q 030931 59 NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP---MEVCEGLG-L-FDLKNRKWHIQG 133 (169)
Q Consensus 59 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~---~~~~~~~~-~-~~~~~~~~~~~~ 133 (169)
+.+|++++|+|+++.. +.....++..... .++|+++|+||+|+.+.... +++...+. . ......++++++
T Consensus 87 ~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~ 161 (194)
T cd01891 87 SMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPVLY 161 (194)
T ss_pred HhcCEEEEEEECCCCc-cHHHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccCEEE
Confidence 9999999999998742 2333334444322 36899999999999653221 22222221 0 011234678999
Q ss_pred eeeccCCCHHHH------HHHHHHHHHhh
Q 030931 134 TCALKGDGLYEG------LDWLASTLKEM 156 (169)
Q Consensus 134 ~Sa~~~~gi~~~------~~~l~~~~~~~ 156 (169)
+||++|.|+.+. +++++.++.+.
T Consensus 162 ~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~ 190 (194)
T cd01891 162 ASAKNGWASLNLEDPSEDLEPLFDTIIEH 190 (194)
T ss_pred eehhccccccccccchhhHHHHHHHHHhc
Confidence 999999887443 44555555443
No 152
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.87 E-value=2.8e-21 Score=133.46 Aligned_cols=148 Identities=20% Similarity=0.179 Sum_probs=106.4
Q ss_pred ccccCCCCCceeeeeceeee-----------------------eeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhc
Q 030931 2 LRVKQPYCTSCTLVKFYLLF-----------------------LLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYF 58 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~-----------------------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 58 (169)
+.+.+|+|||||++.+.... ..|.......+..+...+.+|||||+..+...+..++
T Consensus 4 v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~ 83 (189)
T cd00881 4 IAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVIRGL 83 (189)
T ss_pred EEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHHHHH
Confidence 56799999999999772221 1233444555677789999999999999888899999
Q ss_pred cCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH----hHHHhhhCCCCC---------C
Q 030931 59 NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP----MEVCEGLGLFDL---------K 125 (169)
Q Consensus 59 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~----~~~~~~~~~~~~---------~ 125 (169)
+.+|++++|+|.++...... ..++..... .+.|+++++||+|+...... .++.+.+..... .
T Consensus 84 ~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~----~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (189)
T cd00881 84 SVSDGAILVVDANEGVQPQT-REHLRIARE----GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRN 158 (189)
T ss_pred HhcCEEEEEEECCCCCcHHH-HHHHHHHHH----CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhccc
Confidence 99999999999987554332 233333321 47899999999999753222 223333322111 1
Q ss_pred CceeEEEEeeeccCCCHHHHHHHHHHHHH
Q 030931 126 NRKWHIQGTCALKGDGLYEGLDWLASTLK 154 (169)
Q Consensus 126 ~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 154 (169)
....+++++||++|.|+.++++++...+.
T Consensus 159 ~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 159 GLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred CCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 24578999999999999999999998864
No 153
>PRK15494 era GTPase Era; Provisional
Probab=99.86 E-value=2.2e-21 Score=145.24 Aligned_cols=146 Identities=16% Similarity=0.144 Sum_probs=98.9
Q ss_pred ccccCCCCCceeeeece--------eeeeeeeeEEEEEEEECCEEEEEEEcCCCCC-chhhH-------HhhccCCCEEE
Q 030931 2 LRVKQPYCTSCTLVKFY--------LLFLLLVRFNVEKVQYKNVIFTVWDVGGQEK-LRPLW-------RHYFNNTDGLI 65 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~--------~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~-------~~~~~~~~~ii 65 (169)
|++.+++|||||++++. +.+.+|.......+..++..+.+|||||+.. +..+. ...+++||+++
T Consensus 57 ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil 136 (339)
T PRK15494 57 IIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVL 136 (339)
T ss_pred EEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEE
Confidence 56799999999999873 2334454444455677888999999999843 22221 13477999999
Q ss_pred EEEECCChhhHHHHHH-HHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHH
Q 030931 66 YVVDSLDRERIGKAKQ-EFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 144 (169)
Q Consensus 66 ~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 144 (169)
+|+|..+ ++..... |+..+ +. .+.|+++|+||+|+.+. ...+..+.+.. ......++++||++|.|+++
T Consensus 137 ~VvD~~~--s~~~~~~~il~~l-~~---~~~p~IlViNKiDl~~~-~~~~~~~~l~~---~~~~~~i~~iSAktg~gv~e 206 (339)
T PRK15494 137 LIIDSLK--SFDDITHNILDKL-RS---LNIVPIFLLNKIDIESK-YLNDIKAFLTE---NHPDSLLFPISALSGKNIDG 206 (339)
T ss_pred EEEECCC--CCCHHHHHHHHHH-Hh---cCCCEEEEEEhhcCccc-cHHHHHHHHHh---cCCCcEEEEEeccCccCHHH
Confidence 9999754 3444433 34333 22 24577889999998643 23333333321 11124699999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030931 145 GLDWLASTLKEMR 157 (169)
Q Consensus 145 ~~~~l~~~~~~~~ 157 (169)
+|+++...+.+..
T Consensus 207 L~~~L~~~l~~~~ 219 (339)
T PRK15494 207 LLEYITSKAKISP 219 (339)
T ss_pred HHHHHHHhCCCCC
Confidence 9999998877643
No 154
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.86 E-value=1.8e-21 Score=146.04 Aligned_cols=140 Identities=16% Similarity=0.037 Sum_probs=100.5
Q ss_pred ccccCCCCCceeeeece-------eeeeeeeeEEEEEEEE-CCEEEEEEEcCCCCC---------chhhHHhhccCCCEE
Q 030931 2 LRVKQPYCTSCTLVKFY-------LLFLLLVRFNVEKVQY-KNVIFTVWDVGGQEK---------LRPLWRHYFNNTDGL 64 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~-------~~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~---------~~~~~~~~~~~~~~i 64 (169)
|.+.+++|||||+|++. +.+++|.+.....+.. ++..+.+|||+|..+ |...+ ..+++||++
T Consensus 194 lvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~~~ADli 272 (351)
T TIGR03156 194 LVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATL-EEVREADLL 272 (351)
T ss_pred EECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHH-HHHHhCCEE
Confidence 56789999999999873 3346777777777777 578999999999722 22222 247899999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHH
Q 030931 65 IYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 144 (169)
Q Consensus 65 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 144 (169)
++|+|++++.+++....|...+ +.....+.|+++|+||+|+.+. .++..... ...+++++||++|.|+++
T Consensus 273 l~VvD~s~~~~~~~~~~~~~~L-~~l~~~~~piIlV~NK~Dl~~~---~~v~~~~~------~~~~~i~iSAktg~GI~e 342 (351)
T TIGR03156 273 LHVVDASDPDREEQIEAVEKVL-EELGAEDIPQLLVYNKIDLLDE---PRIERLEE------GYPEAVFVSAKTGEGLDL 342 (351)
T ss_pred EEEEECCCCchHHHHHHHHHHH-HHhccCCCCEEEEEEeecCCCh---HhHHHHHh------CCCCEEEEEccCCCCHHH
Confidence 9999999988777665444332 3222347899999999998643 22221111 112489999999999999
Q ss_pred HHHHHHHH
Q 030931 145 GLDWLAST 152 (169)
Q Consensus 145 ~~~~l~~~ 152 (169)
+++++...
T Consensus 343 L~~~I~~~ 350 (351)
T TIGR03156 343 LLEAIAER 350 (351)
T ss_pred HHHHHHhh
Confidence 99998764
No 155
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.86 E-value=1.9e-21 Score=151.60 Aligned_cols=150 Identities=12% Similarity=0.007 Sum_probs=101.3
Q ss_pred ccccCCCCCceeeeeceeee--------eeeeeEEEEEEEECCEEEEEEEcCCCCC----------chhhH-HhhccCCC
Q 030931 2 LRVKQPYCTSCTLVKFYLLF--------LLLVRFNVEKVQYKNVIFTVWDVGGQEK----------LRPLW-RHYFNNTD 62 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~--------~~t~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~-~~~~~~~~ 62 (169)
+++.+++|||||++++.... ..|.......+..++..+.+|||||..+ +..+. ..+++.+|
T Consensus 216 iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad 295 (472)
T PRK03003 216 LVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAE 295 (472)
T ss_pred EECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCC
Confidence 56799999999999873322 2222223345666788899999999632 22222 23578999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCH
Q 030931 63 GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGL 142 (169)
Q Consensus 63 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 142 (169)
++++|+|+++..++.... ++..+.+ .+.|+++|+||+|+.+......+..............+++++||++|.|+
T Consensus 296 ~vilV~Da~~~~s~~~~~-~~~~~~~----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv 370 (472)
T PRK03003 296 VAVVLIDASEPISEQDQR-VLSMVIE----AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGRAV 370 (472)
T ss_pred EEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCH
Confidence 999999999887777653 4444432 46899999999999653222222222211111223357899999999999
Q ss_pred HHHHHHHHHHHHhh
Q 030931 143 YEGLDWLASTLKEM 156 (169)
Q Consensus 143 ~~~~~~l~~~~~~~ 156 (169)
+++|+.+.+.+...
T Consensus 371 ~~lf~~i~~~~~~~ 384 (472)
T PRK03003 371 DKLVPALETALESW 384 (472)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999876543
No 156
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.86 E-value=1.8e-21 Score=137.72 Aligned_cols=154 Identities=19% Similarity=0.177 Sum_probs=113.1
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEEEEEE----CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEKVQY----KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
+++-+|+|||||+++| .+.+.||++..+..... ..+++.+|||+|+++++.++..++.+++++++|+|.++
T Consensus 10 v~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~ 89 (219)
T COG1100 10 VLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTL 89 (219)
T ss_pred EEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEeccc
Confidence 5778999999999987 45566687765544333 26889999999999999999999999999999999998
Q ss_pred hhh-HHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH-HH------------hhhCCCCCCCceeEEEEeeec-
Q 030931 73 RER-IGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME-VC------------EGLGLFDLKNRKWHIQGTCAL- 137 (169)
Q Consensus 73 ~~~-~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~-~~------------~~~~~~~~~~~~~~~~~~Sa~- 137 (169)
..+ ++....|...+..... .+.|+++++||+|+........ +. ...... .......++++|++
T Consensus 90 ~~~~~~~~~~~~~~l~~~~~-~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~ 167 (219)
T COG1100 90 RESSDELTEEWLEELRELAP-DDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVL-PEVANPALLETSAKS 167 (219)
T ss_pred chhhhHHHHHHHHHHHHhCC-CCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhh-hhhcccceeEeeccc
Confidence 554 4555677777655332 4699999999999976532111 00 000000 01112338999999
Q ss_pred -cCCCHHHHHHHHHHHHHhhh
Q 030931 138 -KGDGLYEGLDWLASTLKEMR 157 (169)
Q Consensus 138 -~~~gi~~~~~~l~~~~~~~~ 157 (169)
++.++.++|.++...+.+..
T Consensus 168 ~~~~~v~~~~~~~~~~~~~~~ 188 (219)
T COG1100 168 LTGPNVNELFKELLRKLLEEI 188 (219)
T ss_pred CCCcCHHHHHHHHHHHHHHhh
Confidence 99999999999999886543
No 157
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.86 E-value=1.6e-21 Score=135.52 Aligned_cols=150 Identities=15% Similarity=-0.004 Sum_probs=100.1
Q ss_pred ccccCCCCCceeeeecee--------------eeeeeeeEEEEEEEEC--------------CEEEEEEEcCCCCCchhh
Q 030931 2 LRVKQPYCTSCTLVKFYL--------------LFLLLVRFNVEKVQYK--------------NVIFTVWDVGGQEKLRPL 53 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~--------------~~~~t~~~~~~~~~~~--------------~~~~~i~D~~G~~~~~~~ 53 (169)
+++..++|||||+++|.. ....|++..+..+.+. ++.+.+|||||+..+...
T Consensus 5 i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~ 84 (192)
T cd01889 5 VLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHASLIRT 84 (192)
T ss_pred EEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHHHHHH
Confidence 567899999999998743 1135666665555443 789999999999765443
Q ss_pred HHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH----hHHHhhhCCC--CCCCc
Q 030931 54 WRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP----MEVCEGLGLF--DLKNR 127 (169)
Q Consensus 54 ~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~----~~~~~~~~~~--~~~~~ 127 (169)
.....+.+|++++|+|+++..+......+. +... .+.|+++++||+|+...... +++.+.+... .....
T Consensus 85 ~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~ 159 (192)
T cd01889 85 IIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFK 159 (192)
T ss_pred HHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCcC
Confidence 334456789999999998754433322222 1111 25799999999998643221 2222221100 01123
Q ss_pred eeEEEEeeeccCCCHHHHHHHHHHHHHhh
Q 030931 128 KWHIQGTCALKGDGLYEGLDWLASTLKEM 156 (169)
Q Consensus 128 ~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (169)
+++++++||++|.|++++++++.+++..+
T Consensus 160 ~~~vi~iSa~~g~gi~~L~~~l~~~~~~~ 188 (192)
T cd01889 160 NSPIIPVSAKPGGGEAELGKDLNNLIVLP 188 (192)
T ss_pred CCCEEEEeccCCCCHHHHHHHHHhccccc
Confidence 56799999999999999999999887654
No 158
>PRK04213 GTP-binding protein; Provisional
Probab=99.86 E-value=1.5e-21 Score=136.53 Aligned_cols=149 Identities=21% Similarity=0.179 Sum_probs=93.9
Q ss_pred ccccCCCCCceeeeeceee-----eeeeeeEEEEEEEECCEEEEEEEcCC-----------CCCchhhHHhhcc----CC
Q 030931 2 LRVKQPYCTSCTLVKFYLL-----FLLLVRFNVEKVQYKNVIFTVWDVGG-----------QEKLRPLWRHYFN----NT 61 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~-----~~~t~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~~~~~----~~ 61 (169)
+++.+++|||||++++... +.|+.......+..+ .+.+||||| +++++..+..++. .+
T Consensus 14 i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (201)
T PRK04213 14 FVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRI 91 (201)
T ss_pred EECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhh
Confidence 5679999999999987432 233333333344444 689999999 4556666666654 45
Q ss_pred CEEEEEEECCChhhHH----------HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCC-CCCce
Q 030931 62 DGLIYVVDSLDRERIG----------KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFD-LKNRK 128 (169)
Q Consensus 62 ~~ii~v~d~~~~~~~~----------~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~-~~~~~ 128 (169)
+++++|+|.++...+. ....++. .+.. .+.|+++|+||+|+.+.. ...++.+.++... ....+
T Consensus 92 ~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (201)
T PRK04213 92 LAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFD-FLRE---LGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYPPWRQWQ 167 (201)
T ss_pred eEEEEEEeCccccccccccccCCCcHHHHHHHH-HHHH---cCCCeEEEEECccccCcHHHHHHHHHHHhcCCccccccC
Confidence 7888888875432210 0011122 2221 378999999999986543 2234444444210 01112
Q ss_pred eEEEEeeeccCCCHHHHHHHHHHHHHhhh
Q 030931 129 WHIQGTCALKGDGLYEGLDWLASTLKEMR 157 (169)
Q Consensus 129 ~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 157 (169)
.+++++||++| |++++++++.+.+.+.+
T Consensus 168 ~~~~~~SA~~g-gi~~l~~~l~~~~~~~~ 195 (201)
T PRK04213 168 DIIAPISAKKG-GIEELKEAIRKRLHEAK 195 (201)
T ss_pred CcEEEEecccC-CHHHHHHHHHHhhcCcc
Confidence 35899999999 99999999999876654
No 159
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.86 E-value=8.7e-21 Score=127.20 Aligned_cols=135 Identities=16% Similarity=0.014 Sum_probs=97.8
Q ss_pred ccccCCCCCceeeeeceeee--------eeeeeEEEEEEEECCEEEEEEEcCCCCCchhh--------HHhhccCCCEEE
Q 030931 2 LRVKQPYCTSCTLVKFYLLF--------LLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPL--------WRHYFNNTDGLI 65 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~--------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~~~~~ii 65 (169)
+++..|+|||||++++.... ..|.......+...+.++.+|||||...+... ....+..+|+++
T Consensus 6 l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v 85 (157)
T cd04164 6 IVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVL 85 (157)
T ss_pred EECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEE
Confidence 67899999999999873222 22223334456667889999999998765422 234677999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHH
Q 030931 66 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG 145 (169)
Q Consensus 66 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 145 (169)
+|+|++++.+......+.. ..+.|+++|+||+|+.+.... .......+++++||+++.|+.++
T Consensus 86 ~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~----------~~~~~~~~~~~~Sa~~~~~v~~l 148 (157)
T cd04164 86 FVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL----------LSLLAGKPIIAISAKTGEGLDEL 148 (157)
T ss_pred EEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc----------ccccCCCceEEEECCCCCCHHHH
Confidence 9999998777666543322 247899999999998754322 11233456999999999999999
Q ss_pred HHHHHHHH
Q 030931 146 LDWLASTL 153 (169)
Q Consensus 146 ~~~l~~~~ 153 (169)
++++...+
T Consensus 149 ~~~l~~~~ 156 (157)
T cd04164 149 KEALLELA 156 (157)
T ss_pred HHHHHHhh
Confidence 99988754
No 160
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.85 E-value=4.8e-21 Score=148.16 Aligned_cols=136 Identities=13% Similarity=0.104 Sum_probs=101.1
Q ss_pred ccccCCCCCceeeeecee--------eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhh--------HHhhccCCCEEE
Q 030931 2 LRVKQPYCTSCTLVKFYL--------LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPL--------WRHYFNNTDGLI 65 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~--------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~~~~~ii 65 (169)
+++.+++|||||+|++.. ....|..+....+..++..+.+|||||.+.+... ...+++.+|+++
T Consensus 220 ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il 299 (449)
T PRK05291 220 IAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVL 299 (449)
T ss_pred EECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEE
Confidence 567999999999998732 2233444555667778899999999998765432 224678999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHH
Q 030931 66 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG 145 (169)
Q Consensus 66 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 145 (169)
+|+|++++.+++....|.. ..+.|+++|+||+|+.+..... .....+++++||++|.|++++
T Consensus 300 ~VvD~s~~~s~~~~~~l~~-------~~~~piiiV~NK~DL~~~~~~~-----------~~~~~~~i~iSAktg~GI~~L 361 (449)
T PRK05291 300 LVLDASEPLTEEDDEILEE-------LKDKPVIVVLNKADLTGEIDLE-----------EENGKPVIRISAKTGEGIDEL 361 (449)
T ss_pred EEecCCCCCChhHHHHHHh-------cCCCCcEEEEEhhhccccchhh-----------hccCCceEEEEeeCCCCHHHH
Confidence 9999998877765443332 2478999999999996432211 112245899999999999999
Q ss_pred HHHHHHHHHh
Q 030931 146 LDWLASTLKE 155 (169)
Q Consensus 146 ~~~l~~~~~~ 155 (169)
++++.+.+..
T Consensus 362 ~~~L~~~l~~ 371 (449)
T PRK05291 362 REAIKELAFG 371 (449)
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 161
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.85 E-value=4.9e-21 Score=134.12 Aligned_cols=150 Identities=21% Similarity=0.199 Sum_probs=105.1
Q ss_pred ccccCCCCCceeeeecee----eeeeeeeEEEEEEEE----CCEEEEEEEcCCCCCchhhHHhhccCC-CEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVKFYL----LFLLLVRFNVEKVQY----KNVIFTVWDVGGQEKLRPLWRHYFNNT-DGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~----~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~-~~ii~v~d~~~ 72 (169)
|++..|+|||||++++.. ...++...+...+.. .+..+.+||+|||++++..+..+++.+ +++|+|+|+++
T Consensus 5 l~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~ 84 (203)
T cd04105 5 LLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSAT 84 (203)
T ss_pred EEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECcc
Confidence 567899999999998722 122333333333333 368899999999999999999999999 99999999998
Q ss_pred h-hhHHHHHHHHHHHhcCC--CCCCCeEEEEEeCCCCCCCCCHhHHHhhhC-----------C-----------------
Q 030931 73 R-ERIGKAKQEFQAIIKDP--FMLNSVILVFANKQDMKGAMTPMEVCEGLG-----------L----------------- 121 (169)
Q Consensus 73 ~-~~~~~~~~~~~~~~~~~--~~~~~piivv~nK~Dl~~~~~~~~~~~~~~-----------~----------------- 121 (169)
. .++..+..|+..++... ..++.|+++++||+|+..+.+.+.+.+.+. .
T Consensus 85 ~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~~~~~ 164 (203)
T cd04105 85 FQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKESLGD 164 (203)
T ss_pred chhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccccccc
Confidence 7 67888777776665422 125799999999999875433211111100 0
Q ss_pred ------CC-CCCceeEEEEeeeccCC-CHHHHHHHHHH
Q 030931 122 ------FD-LKNRKWHIQGTCALKGD-GLYEGLDWLAS 151 (169)
Q Consensus 122 ------~~-~~~~~~~~~~~Sa~~~~-gi~~~~~~l~~ 151 (169)
.. .....+.++++|++.+. |+++.-+|+.+
T Consensus 165 ~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 165 KGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred ccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 00 01234679999999887 69999888864
No 162
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.85 E-value=1.7e-20 Score=144.58 Aligned_cols=140 Identities=12% Similarity=0.055 Sum_probs=102.5
Q ss_pred ccccCCCCCceeeeeceee--------eeeeeeEEEEEEEECCEEEEEEEcCCCCCchhh--------HHhhccCCCEEE
Q 030931 2 LRVKQPYCTSCTLVKFYLL--------FLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPL--------WRHYFNNTDGLI 65 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~--------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~~~~~ii 65 (169)
|++.+++|||||+|++... +..|..+....+..++..+++|||||+..+... ...+++.+|+++
T Consensus 208 IvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il 287 (442)
T TIGR00450 208 IVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVI 287 (442)
T ss_pred EECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEE
Confidence 5779999999999987322 222344445567778899999999998765432 235788999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHH
Q 030931 66 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG 145 (169)
Q Consensus 66 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 145 (169)
+|+|.+++.+++.. |+..+.. .+.|+++|+||+|+... +..++.+ ..+.+++++||++ .||+++
T Consensus 288 ~V~D~s~~~s~~~~--~l~~~~~----~~~piIlV~NK~Dl~~~-~~~~~~~--------~~~~~~~~vSak~-~gI~~~ 351 (442)
T TIGR00450 288 YVLDASQPLTKDDF--LIIDLNK----SKKPFILVLNKIDLKIN-SLEFFVS--------SKVLNSSNLSAKQ-LKIKAL 351 (442)
T ss_pred EEEECCCCCChhHH--HHHHHhh----CCCCEEEEEECccCCCc-chhhhhh--------hcCCceEEEEEec-CCHHHH
Confidence 99999988777664 6655522 36899999999998643 2222221 2234589999998 699999
Q ss_pred HHHHHHHHHhhh
Q 030931 146 LDWLASTLKEMR 157 (169)
Q Consensus 146 ~~~l~~~~~~~~ 157 (169)
|+.+...+.+..
T Consensus 352 ~~~L~~~i~~~~ 363 (442)
T TIGR00450 352 VDLLTQKINAFY 363 (442)
T ss_pred HHHHHHHHHHHh
Confidence 999999887653
No 163
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.85 E-value=7.2e-21 Score=138.73 Aligned_cols=146 Identities=16% Similarity=0.053 Sum_probs=95.9
Q ss_pred ccccCCCCCceeeeeceeeee--------eeeeEEEEEEEECCEEEEEEEcCCCCCch-h-------hHHhhccCCCEEE
Q 030931 2 LRVKQPYCTSCTLVKFYLLFL--------LLVRFNVEKVQYKNVIFTVWDVGGQEKLR-P-------LWRHYFNNTDGLI 65 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~--------~t~~~~~~~~~~~~~~~~i~D~~G~~~~~-~-------~~~~~~~~~~~ii 65 (169)
|++.+++|||||+|++..... .|..........++..+.+|||||..... . ....+++++|+++
T Consensus 5 liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl 84 (270)
T TIGR00436 5 ILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLIL 84 (270)
T ss_pred EECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEE
Confidence 678999999999998844332 22221112233466789999999975431 1 1345678999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCce-eEEEEeeeccCCCHHH
Q 030931 66 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRK-WHIQGTCALKGDGLYE 144 (169)
Q Consensus 66 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~ 144 (169)
+|+|+++..+.. ..++..+ .. .+.|+++|+||+|+.+.....+....+. ...+ .+++++||++|.|+++
T Consensus 85 ~VvD~~~~~~~~--~~i~~~l-~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~----~~~~~~~v~~iSA~~g~gi~~ 154 (270)
T TIGR00436 85 FVVDSDQWNGDG--EFVLTKL-QN---LKRPVVLTRNKLDNKFKDKLLPLIDKYA----ILEDFKDIVPISALTGDNTSF 154 (270)
T ss_pred EEEECCCCCchH--HHHHHHH-Hh---cCCCEEEEEECeeCCCHHHHHHHHHHHH----hhcCCCceEEEecCCCCCHHH
Confidence 999998876654 2233333 22 3689999999999863211111111111 1111 2689999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030931 145 GLDWLASTLKEMR 157 (169)
Q Consensus 145 ~~~~l~~~~~~~~ 157 (169)
+++++.+.+.+..
T Consensus 155 L~~~l~~~l~~~~ 167 (270)
T TIGR00436 155 LAAFIEVHLPEGP 167 (270)
T ss_pred HHHHHHHhCCCCC
Confidence 9999998876543
No 164
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.85 E-value=1e-20 Score=146.26 Aligned_cols=149 Identities=13% Similarity=0.026 Sum_probs=101.3
Q ss_pred ccccCCCCCceeeeecee--------eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhH-----------HhhccCCC
Q 030931 2 LRVKQPYCTSCTLVKFYL--------LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLW-----------RHYFNNTD 62 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~--------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~-----------~~~~~~~~ 62 (169)
+++.+++|||||++++.. ....|.......+..++..+.+|||||+.+..... ..+++.+|
T Consensus 177 ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad 256 (429)
T TIGR03594 177 IIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERAD 256 (429)
T ss_pred EECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCC
Confidence 567899999999998732 12233333334556677899999999986544321 24678999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC-CCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCC
Q 030931 63 GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK-GAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDG 141 (169)
Q Consensus 63 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 141 (169)
++++|+|+++..+..... ++..+.+ .+.|+++|+||+|+. +....+++...+.........++++++||++|.|
T Consensus 257 ~~ilV~D~~~~~~~~~~~-~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~ 331 (429)
T TIGR03594 257 VVLLVLDATEGITEQDLR-IAGLILE----AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALTGQG 331 (429)
T ss_pred EEEEEEECCCCccHHHHH-HHHHHHH----cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeCCCCCC
Confidence 999999998876655532 3333322 368999999999997 2222233333332211122346899999999999
Q ss_pred HHHHHHHHHHHHHh
Q 030931 142 LYEGLDWLASTLKE 155 (169)
Q Consensus 142 i~~~~~~l~~~~~~ 155 (169)
++++|+++......
T Consensus 332 v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 332 VDKLLDAIDEVYEN 345 (429)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999886654
No 165
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.85 E-value=9.2e-21 Score=146.48 Aligned_cols=151 Identities=23% Similarity=0.143 Sum_probs=106.2
Q ss_pred ccccCCCCCceeeeece-------eeeeeeeeEEEEEEEECCEEEEEEEcCCCCC----chhh---HHhhccCCCEEEEE
Q 030931 2 LRVKQPYCTSCTLVKFY-------LLFLLLVRFNVEKVQYKNVIFTVWDVGGQEK----LRPL---WRHYFNNTDGLIYV 67 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~-------~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~---~~~~~~~~~~ii~v 67 (169)
|++.+.+|||||+++++ +.+.+|...+...++.++..+.+||+||... ...+ ...+++.++++++|
T Consensus 164 LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~V 243 (500)
T PRK12296 164 LVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHV 243 (500)
T ss_pred EEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEE
Confidence 56789999999999874 3456777777778888889999999999632 1122 22346789999999
Q ss_pred EECCCh----hhHHHHHHHHHHHhcCC----------CCCCCeEEEEEeCCCCCCCCCHhH-HHhhhCCCCCCCceeEEE
Q 030931 68 VDSLDR----ERIGKAKQEFQAIIKDP----------FMLNSVILVFANKQDMKGAMTPME-VCEGLGLFDLKNRKWHIQ 132 (169)
Q Consensus 68 ~d~~~~----~~~~~~~~~~~~~~~~~----------~~~~~piivv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~ 132 (169)
+|+++. +.+.....+..++.... ...+.|+++|+||+|+.+.....+ +...+ ...+++++
T Consensus 244 VD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l-----~~~g~~Vf 318 (500)
T PRK12296 244 VDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPEL-----EARGWPVF 318 (500)
T ss_pred ECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHH-----HHcCCeEE
Confidence 999753 34444444443432211 234789999999999965422211 11111 22356799
Q ss_pred EeeeccCCCHHHHHHHHHHHHHhhh
Q 030931 133 GTCALKGDGLYEGLDWLASTLKEMR 157 (169)
Q Consensus 133 ~~Sa~~~~gi~~~~~~l~~~~~~~~ 157 (169)
++||++++|+.+++.++.+.+...+
T Consensus 319 ~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 319 EVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhhh
Confidence 9999999999999999999887754
No 166
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.84 E-value=3.4e-20 Score=124.05 Aligned_cols=146 Identities=18% Similarity=0.045 Sum_probs=100.4
Q ss_pred ccccCCCCCceeeeeceeee--------eeeeeEEEEEEEEC-CEEEEEEEcCCCCCchh-------hHHhhccCCCEEE
Q 030931 2 LRVKQPYCTSCTLVKFYLLF--------LLLVRFNVEKVQYK-NVIFTVWDVGGQEKLRP-------LWRHYFNNTDGLI 65 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~--------~~t~~~~~~~~~~~-~~~~~i~D~~G~~~~~~-------~~~~~~~~~~~ii 65 (169)
|.+..|+|||||++++.... ..|........... ...+.+||+||...... ....+++.+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 56889999999999873321 12223333334443 78899999999876543 3345788999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHH
Q 030931 66 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG 145 (169)
Q Consensus 66 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 145 (169)
+|+|.++........ +..... ..+.|+++|+||+|+.......+...............+++++||+++.|+.++
T Consensus 81 ~v~~~~~~~~~~~~~-~~~~~~----~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 81 FVVDADLRADEEEEK-LLELLR----ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEeCCCCCCHHHHH-HHHHHH----hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 999998876665543 333332 247899999999998755433332211111222345668999999999999999
Q ss_pred HHHHHHH
Q 030931 146 LDWLAST 152 (169)
Q Consensus 146 ~~~l~~~ 152 (169)
++++.+.
T Consensus 156 ~~~l~~~ 162 (163)
T cd00880 156 REALIEA 162 (163)
T ss_pred HHHHHhh
Confidence 9999865
No 167
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.84 E-value=2.3e-20 Score=148.32 Aligned_cols=146 Identities=16% Similarity=0.138 Sum_probs=104.9
Q ss_pred ccccCCCCCceeeeecee------------eeeee------eeEE----EEEEEE-----CCEEEEEEEcCCCCCchhhH
Q 030931 2 LRVKQPYCTSCTLVKFYL------------LFLLL------VRFN----VEKVQY-----KNVIFTVWDVGGQEKLRPLW 54 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~------------~~~~t------~~~~----~~~~~~-----~~~~~~i~D~~G~~~~~~~~ 54 (169)
+++..++|||||++++.. .+..+ .|++ ...+.+ ..+.+++|||||+..|...+
T Consensus 8 IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~~~v 87 (595)
T TIGR01393 8 IIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYEV 87 (595)
T ss_pred EECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHHHHH
Confidence 567889999999998722 11111 1322 223433 24899999999999999999
Q ss_pred HhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhCCCCCCCceeEE
Q 030931 55 RHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP---MEVCEGLGLFDLKNRKWHI 131 (169)
Q Consensus 55 ~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~ 131 (169)
..+++.||++|+|+|+++..+......|.... + .+.|+++|+||+|+.+.... .++.+.++.. ..++
T Consensus 88 ~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~----~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~-----~~~v 157 (595)
T TIGR01393 88 SRSLAACEGALLLVDAAQGIEAQTLANVYLAL-E----NDLEIIPVINKIDLPSADPERVKKEIEEVIGLD-----ASEA 157 (595)
T ss_pred HHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-H----cCCCEEEEEECcCCCccCHHHHHHHHHHHhCCC-----cceE
Confidence 99999999999999999876666655554433 2 36799999999998653221 2333333221 1248
Q ss_pred EEeeeccCCCHHHHHHHHHHHHHhhh
Q 030931 132 QGTCALKGDGLYEGLDWLASTLKEMR 157 (169)
Q Consensus 132 ~~~Sa~~~~gi~~~~~~l~~~~~~~~ 157 (169)
+++||++|.|+.++|+++.+.+....
T Consensus 158 i~vSAktG~GI~~Lle~I~~~lp~p~ 183 (595)
T TIGR01393 158 ILASAKTGIGIEEILEAIVKRVPPPK 183 (595)
T ss_pred EEeeccCCCCHHHHHHHHHHhCCCCC
Confidence 99999999999999999999876654
No 168
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.84 E-value=7e-20 Score=139.85 Aligned_cols=148 Identities=24% Similarity=0.165 Sum_probs=105.0
Q ss_pred ccccCCCCCceeeeecee-------eeeeeeeEEEEEEEEC-CEEEEEEEcCCCCC----chhhHHhh---ccCCCEEEE
Q 030931 2 LRVKQPYCTSCTLVKFYL-------LFLLLVRFNVEKVQYK-NVIFTVWDVGGQEK----LRPLWRHY---FNNTDGLIY 66 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~-------~~~~t~~~~~~~~~~~-~~~~~i~D~~G~~~----~~~~~~~~---~~~~~~ii~ 66 (169)
|++-+.+|||||+++++. .+.+|...+...+.+. ...+.+||+||... ...+...+ ++.++++++
T Consensus 163 lVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~ 242 (424)
T PRK12297 163 LVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVH 242 (424)
T ss_pred EEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEE
Confidence 456899999999998743 3455666666667765 78899999999643 22233333 556999999
Q ss_pred EEECCCh---hhHHHHHHHHHHHhcC-CCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCCCCCceeEEEEeeeccCCC
Q 030931 67 VVDSLDR---ERIGKAKQEFQAIIKD-PFMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCALKGDG 141 (169)
Q Consensus 67 v~d~~~~---~~~~~~~~~~~~~~~~-~~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 141 (169)
|+|+++. ++++....|..++... ....+.|+++|+||+|+..... .+++.+.+. .+++++||++++|
T Consensus 243 VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~~~l~--------~~i~~iSA~tgeG 314 (424)
T PRK12297 243 VIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKEKLG--------PKVFPISALTGQG 314 (424)
T ss_pred EEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHHHHhC--------CcEEEEeCCCCCC
Confidence 9999764 5666666666665442 2235789999999999853211 112222221 4689999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q 030931 142 LYEGLDWLASTLKEMR 157 (169)
Q Consensus 142 i~~~~~~l~~~~~~~~ 157 (169)
++++++++.+.+.+.+
T Consensus 315 I~eL~~~L~~~l~~~~ 330 (424)
T PRK12297 315 LDELLYAVAELLEETP 330 (424)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 9999999998887654
No 169
>PRK11058 GTPase HflX; Provisional
Probab=99.83 E-value=5.1e-20 Score=141.18 Aligned_cols=143 Identities=15% Similarity=0.037 Sum_probs=100.3
Q ss_pred ccccCCCCCceeeeecee-------eeeeeeeEEEEEEEECCE-EEEEEEcCCCCCc--hhhHH------hhccCCCEEE
Q 030931 2 LRVKQPYCTSCTLVKFYL-------LFLLLVRFNVEKVQYKNV-IFTVWDVGGQEKL--RPLWR------HYFNNTDGLI 65 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~-------~~~~t~~~~~~~~~~~~~-~~~i~D~~G~~~~--~~~~~------~~~~~~~~ii 65 (169)
|.+.+++|||||+|++.. .+++|.......+...+. .+.+|||+|..+. ...+. ..++.||+++
T Consensus 202 lVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL 281 (426)
T PRK11058 202 LVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLL 281 (426)
T ss_pred EECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEE
Confidence 567999999999998743 345666666666766553 8899999998542 22222 2368899999
Q ss_pred EEEECCChhhHHHHHH---HHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeE-EEEeeeccCCC
Q 030931 66 YVVDSLDRERIGKAKQ---EFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWH-IQGTCALKGDG 141 (169)
Q Consensus 66 ~v~d~~~~~~~~~~~~---~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~g 141 (169)
+|+|++++.+++.... ++..+ ...+.|+++|+||+|+.+... ..+.. .. .+.+ ++++||++|.|
T Consensus 282 ~VvDaS~~~~~e~l~~v~~iL~el----~~~~~pvIiV~NKiDL~~~~~-~~~~~-~~------~~~~~~v~ISAktG~G 349 (426)
T PRK11058 282 HVVDAADVRVQENIEAVNTVLEEI----DAHEIPTLLVMNKIDMLDDFE-PRIDR-DE------ENKPIRVWLSAQTGAG 349 (426)
T ss_pred EEEeCCCccHHHHHHHHHHHHHHh----ccCCCCEEEEEEcccCCCchh-HHHHH-Hh------cCCCceEEEeCCCCCC
Confidence 9999999877776543 34333 224789999999999864311 11111 10 1122 58899999999
Q ss_pred HHHHHHHHHHHHHhh
Q 030931 142 LYEGLDWLASTLKEM 156 (169)
Q Consensus 142 i~~~~~~l~~~~~~~ 156 (169)
++++++++...+...
T Consensus 350 IdeL~e~I~~~l~~~ 364 (426)
T PRK11058 350 IPLLFQALTERLSGE 364 (426)
T ss_pred HHHHHHHHHHHhhhc
Confidence 999999999988643
No 170
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.83 E-value=1.1e-19 Score=121.27 Aligned_cols=144 Identities=19% Similarity=0.175 Sum_probs=115.4
Q ss_pred ccccCCCCCceeeeeceeee-----------------eeeeeEEEEEEEEC-CEEEEEEEcCCCCCchhhHHhhccCCCE
Q 030931 2 LRVKQPYCTSCTLVKFYLLF-----------------LLLVRFNVEKVQYK-NVIFTVWDVGGQEKLRPLWRHYFNNTDG 63 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~-----------------~~t~~~~~~~~~~~-~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 63 (169)
+.+-.++|||+++.+.++.. ..|+..++..+... +..+.+++||||++|+-+|..+++++.+
T Consensus 15 v~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~~l~~ga~g 94 (187)
T COG2229 15 VIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWEILSRGAVG 94 (187)
T ss_pred EEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHHHHHhCCcce
Confidence 34567999999999764333 25666777777664 4999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHH
Q 030931 64 LIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLY 143 (169)
Q Consensus 64 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 143 (169)
+|+++|.+.+..+ .....+..+ ... ..+|+++++||.|+.++.+++++.+.+.... ...+.++++|.+++|..
T Consensus 95 aivlVDss~~~~~-~a~~ii~f~-~~~--~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~---~~~~vi~~~a~e~~~~~ 167 (187)
T COG2229 95 AIVLVDSSRPITF-HAEEIIDFL-TSR--NPIPVVVAINKQDLFDALPPEKIREALKLEL---LSVPVIEIDATEGEGAR 167 (187)
T ss_pred EEEEEecCCCcch-HHHHHHHHH-hhc--cCCCEEEEeeccccCCCCCHHHHHHHHHhcc---CCCceeeeecccchhHH
Confidence 9999999999888 333333333 322 1299999999999999999999888886542 45679999999999999
Q ss_pred HHHHHHHHH
Q 030931 144 EGLDWLAST 152 (169)
Q Consensus 144 ~~~~~l~~~ 152 (169)
+.++.+...
T Consensus 168 ~~L~~ll~~ 176 (187)
T COG2229 168 DQLDVLLLK 176 (187)
T ss_pred HHHHHHHhh
Confidence 988888765
No 171
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.83 E-value=1.5e-19 Score=122.96 Aligned_cols=146 Identities=14% Similarity=0.016 Sum_probs=95.3
Q ss_pred ccccCCCCCceeeeeceeee--------eeeeeEEEEEEEECCEEEEEEEcCCCCCchh-----------hHHhhccCCC
Q 030931 2 LRVKQPYCTSCTLVKFYLLF--------LLLVRFNVEKVQYKNVIFTVWDVGGQEKLRP-----------LWRHYFNNTD 62 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~--------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----------~~~~~~~~~~ 62 (169)
+.+.+|+|||||++++.... ..|.......+..++..+.+|||||...... .....++.+|
T Consensus 7 i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d 86 (174)
T cd01895 7 IIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERAD 86 (174)
T ss_pred EEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcC
Confidence 56789999999999873322 1122222344556778899999999754311 1123567899
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCC
Q 030931 63 GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGD 140 (169)
Q Consensus 63 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 140 (169)
++++|+|.+++.+.... .++..... .+.|+++++||+|+.+. ...+.+...+..........+++++||+++.
T Consensus 87 ~vi~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 161 (174)
T cd01895 87 VVLLVIDATEGITEQDL-RIAGLILE----EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQ 161 (174)
T ss_pred eEEEEEeCCCCcchhHH-HHHHHHHh----cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccCCC
Confidence 99999999887665443 23333221 36899999999998754 2223323333211111123579999999999
Q ss_pred CHHHHHHHHHHH
Q 030931 141 GLYEGLDWLAST 152 (169)
Q Consensus 141 gi~~~~~~l~~~ 152 (169)
|+.++++++.+.
T Consensus 162 ~i~~~~~~l~~~ 173 (174)
T cd01895 162 GVDKLFDAIDEV 173 (174)
T ss_pred CHHHHHHHHHHh
Confidence 999999998753
No 172
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.83 E-value=9.1e-20 Score=144.43 Aligned_cols=145 Identities=21% Similarity=0.133 Sum_probs=99.2
Q ss_pred ccccCCCCCceeeeecee-----e--eeeeeeEEEEEEEECCE-EEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931 2 LRVKQPYCTSCTLVKFYL-----L--FLLLVRFNVEKVQYKNV-IFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR 73 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~-----~--~~~t~~~~~~~~~~~~~-~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 73 (169)
+++..++|||||++++.. . ...|..+....+.+.+. .+.+||||||+.|..++...++.+|++|+|+|+++.
T Consensus 92 I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dg 171 (587)
T TIGR00487 92 IMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDG 171 (587)
T ss_pred EECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCC
Confidence 567899999999998722 1 12344444455555433 899999999999999999999999999999998763
Q ss_pred hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCC--C--CceeEEEEeeeccCCCHHHHHHHH
Q 030931 74 ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDL--K--NRKWHIQGTCALKGDGLYEGLDWL 149 (169)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~Sa~~~~gi~~~~~~l 149 (169)
..-.. ...+... ...+.|+++++||+|+.+. +.+++...+..... . ....+++++||++|+|+.++++++
T Consensus 172 v~~qT-~e~i~~~----~~~~vPiIVviNKiDl~~~-~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I 245 (587)
T TIGR00487 172 VMPQT-IEAISHA----KAANVPIIVAINKIDKPEA-NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMI 245 (587)
T ss_pred CCHhH-HHHHHHH----HHcCCCEEEEEECcccccC-CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhh
Confidence 21111 1122222 1236899999999999653 33333333221100 1 112579999999999999999998
Q ss_pred HHH
Q 030931 150 AST 152 (169)
Q Consensus 150 ~~~ 152 (169)
...
T Consensus 246 ~~~ 248 (587)
T TIGR00487 246 LLQ 248 (587)
T ss_pred hhh
Confidence 753
No 173
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.82 E-value=2.5e-20 Score=120.89 Aligned_cols=153 Identities=12% Similarity=0.160 Sum_probs=118.0
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEEE----EEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK----VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
|++....|||||+-++ .+.+..|.|+++.. +....+.+.|||.+|++++..+.+..++++-+|+|+||++.
T Consensus 25 llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~ 104 (205)
T KOG1673|consen 25 LLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTR 104 (205)
T ss_pred eecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCc
Confidence 5677889999999976 46667788877643 33367889999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh--HHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM--EVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 150 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 150 (169)
+.+++++..|+++..+.. +..-.++||+|.|..-..+++ +....-....++-.+...++||+.+..|+..+|+-+.
T Consensus 105 r~TLnSi~~WY~QAr~~N--ktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KIFK~vl 182 (205)
T KOG1673|consen 105 RSTLNSIKEWYRQARGLN--KTAIPILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKIFKIVL 182 (205)
T ss_pred hHHHHHHHHHHHHHhccC--CccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHHHHHHH
Confidence 999999999999986543 344556789999975333321 1111111112233455699999999999999999999
Q ss_pred HHHHhh
Q 030931 151 STLKEM 156 (169)
Q Consensus 151 ~~~~~~ 156 (169)
..+...
T Consensus 183 AklFnL 188 (205)
T KOG1673|consen 183 AKLFNL 188 (205)
T ss_pred HHHhCC
Confidence 888775
No 174
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.82 E-value=3.6e-20 Score=124.95 Aligned_cols=141 Identities=18% Similarity=0.099 Sum_probs=91.8
Q ss_pred CccccCCCCCceeeeeceeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhH----HhhccCCCEEEEEEECCChhhH
Q 030931 1 MLRVKQPYCTSCTLVKFYLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLW----RHYFNNTDGLIYVVDSLDRERI 76 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~----~~~~~~~~~ii~v~d~~~~~~~ 76 (169)
++++.+++|||||++++....... .....+.+... .+|||||.......+ ...++++|++++|+|+++..++
T Consensus 5 ~~iG~~~~GKstl~~~l~~~~~~~--~~~~~v~~~~~--~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s~ 80 (158)
T PRK15467 5 AFVGAVGAGKTTLFNALQGNYTLA--RKTQAVEFNDK--GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPESR 80 (158)
T ss_pred EEECCCCCCHHHHHHHHcCCCccC--ccceEEEECCC--CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCcccc
Confidence 367889999999999875443211 12222233222 379999984333222 2346899999999999887655
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhh
Q 030931 77 GKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM 156 (169)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (169)
. ..|+..+ ..+.|+++++||+|+.+. ..+.+.+.+... ....+++++||++|+|++++|+++.+.+.+.
T Consensus 81 ~--~~~~~~~-----~~~~~ii~v~nK~Dl~~~-~~~~~~~~~~~~---~~~~p~~~~Sa~~g~gi~~l~~~l~~~~~~~ 149 (158)
T PRK15467 81 L--PAGLLDI-----GVSKRQIAVISKTDMPDA-DVAATRKLLLET---GFEEPIFELNSHDPQSVQQLVDYLASLTKQE 149 (158)
T ss_pred c--CHHHHhc-----cCCCCeEEEEEccccCcc-cHHHHHHHHHHc---CCCCCEEEEECCCccCHHHHHHHHHHhchhh
Confidence 2 2344433 136799999999998643 333333322110 1114799999999999999999998877554
No 175
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.82 E-value=6.6e-20 Score=145.74 Aligned_cols=135 Identities=17% Similarity=0.113 Sum_probs=95.3
Q ss_pred ccCCCCCceeeeeceee-------eeeeeeEEEEEEEECCEEEEEEEcCCCCCchhh------HHhhc--cCCCEEEEEE
Q 030931 4 VKQPYCTSCTLVKFYLL-------FLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPL------WRHYF--NNTDGLIYVV 68 (169)
Q Consensus 4 ~~~~~~Ktsll~~f~~~-------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~~~ii~v~ 68 (169)
+++++|||||+|++... +..|+......+..++.++++|||||++.+... ...++ +++|++++|+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~Vv 80 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVV 80 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEe
Confidence 57899999999988432 223444444566778889999999999887543 33343 3799999999
Q ss_pred ECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC----HhHHHhhhCCCCCCCceeEEEEeeeccCCCHHH
Q 030931 69 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT----PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 144 (169)
Q Consensus 69 d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 144 (169)
|.++.++ ...+..++.+ .+.|+++|+||+|+.+... .+++.+. .+.+++++||++|+|+++
T Consensus 81 Dat~ler---~l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~--------lg~pvv~tSA~tg~Gi~e 145 (591)
T TIGR00437 81 DASNLER---NLYLTLQLLE----LGIPMILALNLVDEAEKKGIRIDEEKLEER--------LGVPVVPTSATEGRGIER 145 (591)
T ss_pred cCCcchh---hHHHHHHHHh----cCCCEEEEEehhHHHHhCCChhhHHHHHHH--------cCCCEEEEECCCCCCHHH
Confidence 9987542 2333334432 3689999999999854322 1222222 245699999999999999
Q ss_pred HHHHHHHHH
Q 030931 145 GLDWLASTL 153 (169)
Q Consensus 145 ~~~~l~~~~ 153 (169)
+++++.+..
T Consensus 146 L~~~i~~~~ 154 (591)
T TIGR00437 146 LKDAIRKAI 154 (591)
T ss_pred HHHHHHHHh
Confidence 999998754
No 176
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.82 E-value=1.5e-19 Score=139.95 Aligned_cols=137 Identities=17% Similarity=0.127 Sum_probs=95.7
Q ss_pred ccccCCCCCceeeeeceeee--------eeeeeEEEEEEEECCEEEEEEEcCCCCC--------chhhHHhhccCCCEEE
Q 030931 2 LRVKQPYCTSCTLVKFYLLF--------LLLVRFNVEKVQYKNVIFTVWDVGGQEK--------LRPLWRHYFNNTDGLI 65 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~--------~~t~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~~~~~ii 65 (169)
|++.+++|||||++++.... ..|.......+.+.+..+.+|||||++. +......+++.+|+++
T Consensus 6 ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il 85 (435)
T PRK00093 6 IVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVIL 85 (435)
T ss_pred EECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEE
Confidence 56799999999999873322 2233344556777889999999999987 3333456788999999
Q ss_pred EEEECCChhhHH--HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCcee-EEEEeeeccCCCH
Q 030931 66 YVVDSLDRERIG--KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKW-HIQGTCALKGDGL 142 (169)
Q Consensus 66 ~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi 142 (169)
+|+|.++..+.. .+..|+.. .+.|+++|+||+|+.+. .....+...+ ++ .++++||++|.|+
T Consensus 86 ~vvd~~~~~~~~~~~~~~~l~~-------~~~piilv~NK~D~~~~--~~~~~~~~~l------g~~~~~~iSa~~g~gv 150 (435)
T PRK00093 86 FVVDGRAGLTPADEEIAKILRK-------SNKPVILVVNKVDGPDE--EADAYEFYSL------GLGEPYPISAEHGRGI 150 (435)
T ss_pred EEEECCCCCCHHHHHHHHHHHH-------cCCcEEEEEECccCccc--hhhHHHHHhc------CCCCCEEEEeeCCCCH
Confidence 999997753332 23333332 26899999999997542 1222222111 12 2799999999999
Q ss_pred HHHHHHHHHHH
Q 030931 143 YEGLDWLASTL 153 (169)
Q Consensus 143 ~~~~~~l~~~~ 153 (169)
.++++++....
T Consensus 151 ~~l~~~I~~~~ 161 (435)
T PRK00093 151 GDLLDAILEEL 161 (435)
T ss_pred HHHHHHHHhhC
Confidence 99999998733
No 177
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.82 E-value=5.2e-21 Score=123.08 Aligned_cols=102 Identities=22% Similarity=0.255 Sum_probs=75.8
Q ss_pred ccccCCCCCceeeeeceeeeee-----------eeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEEC
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLL-----------LVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDS 70 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~-----------t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~ 70 (169)
+++..|+|||||+++|.....+ +..............+.+||++|++.+...+...+..+|++++|||+
T Consensus 4 V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~ 83 (119)
T PF08477_consen 4 VLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILVYDL 83 (119)
T ss_dssp EECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEEEEC
T ss_pred EECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEEEcC
Confidence 6789999999999988433332 22222333333455699999999998888888889999999999999
Q ss_pred CChhhHHHHHH---HHHHHhcCCCCCCCeEEEEEeCCC
Q 030931 71 LDRERIGKAKQ---EFQAIIKDPFMLNSVILVFANKQD 105 (169)
Q Consensus 71 ~~~~~~~~~~~---~~~~~~~~~~~~~~piivv~nK~D 105 (169)
+++.+++.+.+ |+..+.+. .++.|+++|+||.|
T Consensus 84 s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D 119 (119)
T PF08477_consen 84 SDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD 119 (119)
T ss_dssp CGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred CChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence 99999988754 45555332 24699999999998
No 178
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.81 E-value=2e-19 Score=139.06 Aligned_cols=141 Identities=18% Similarity=0.129 Sum_probs=98.5
Q ss_pred ccccCCCCCceeeeeceeee--------eeeeeEEEEEEEECCEEEEEEEcCCCC--------CchhhHHhhccCCCEEE
Q 030931 2 LRVKQPYCTSCTLVKFYLLF--------LLLVRFNVEKVQYKNVIFTVWDVGGQE--------KLRPLWRHYFNNTDGLI 65 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~--------~~t~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~~~~~~ii 65 (169)
|++.+++|||||+|++.... ..|.......+.+++..+.+|||||.. .+......+++.+|+++
T Consensus 4 ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl 83 (429)
T TIGR03594 4 IVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVIL 83 (429)
T ss_pred EECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEE
Confidence 56799999999999884322 223334456677788999999999963 33445666789999999
Q ss_pred EEEECCChhhHHH--HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHH
Q 030931 66 YVVDSLDRERIGK--AKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLY 143 (169)
Q Consensus 66 ~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 143 (169)
+|+|..+..+... +..|+.. .+.|+++|+||+|+.+......-...++. -+++++||++|.|+.
T Consensus 84 ~vvD~~~~~~~~d~~i~~~l~~-------~~~piilVvNK~D~~~~~~~~~~~~~lg~-------~~~~~vSa~~g~gv~ 149 (429)
T TIGR03594 84 FVVDGREGLTPEDEEIAKWLRK-------SGKPVILVANKIDGKKEDAVAAEFYSLGF-------GEPIPISAEHGRGIG 149 (429)
T ss_pred EEEeCCCCCCHHHHHHHHHHHH-------hCCCEEEEEECccCCcccccHHHHHhcCC-------CCeEEEeCCcCCChH
Confidence 9999976433332 2333332 26899999999998643221111111211 148999999999999
Q ss_pred HHHHHHHHHHHhh
Q 030931 144 EGLDWLASTLKEM 156 (169)
Q Consensus 144 ~~~~~l~~~~~~~ 156 (169)
++++++...+.+.
T Consensus 150 ~ll~~i~~~l~~~ 162 (429)
T TIGR03594 150 DLLDAILELLPEE 162 (429)
T ss_pred HHHHHHHHhcCcc
Confidence 9999999887553
No 179
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.81 E-value=2.1e-19 Score=145.63 Aligned_cols=142 Identities=19% Similarity=0.108 Sum_probs=101.2
Q ss_pred ccccCCCCCceeeeecee-------eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh-
Q 030931 2 LRVKQPYCTSCTLVKFYL-------LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR- 73 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~-------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~- 73 (169)
+++..++|||||++++.. ....|..+....+.+.+..+.|||||||+.|..++...++.+|++|+|+|+++.
T Consensus 295 ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv 374 (787)
T PRK05306 295 IMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGV 374 (787)
T ss_pred EECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCC
Confidence 567889999999998722 122344444556677789999999999999999999999999999999999873
Q ss_pred --hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC-C-CCC--ceeEEEEeeeccCCCHHHHHH
Q 030931 74 --ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF-D-LKN--RKWHIQGTCALKGDGLYEGLD 147 (169)
Q Consensus 74 --~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-~-~~~--~~~~~~~~Sa~~~~gi~~~~~ 147 (169)
.+.+.+ ... ...++|+++++||+|+.+. +.+.+...+... . ... ..++++++||++|.|+.++|+
T Consensus 375 ~~qT~e~i----~~a----~~~~vPiIVviNKiDl~~a-~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle 445 (787)
T PRK05306 375 MPQTIEAI----NHA----KAAGVPIIVAINKIDKPGA-NPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLE 445 (787)
T ss_pred CHhHHHHH----HHH----HhcCCcEEEEEECcccccc-CHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHH
Confidence 233221 122 1236899999999999653 333333322110 0 011 236799999999999999999
Q ss_pred HHHHH
Q 030931 148 WLAST 152 (169)
Q Consensus 148 ~l~~~ 152 (169)
++...
T Consensus 446 ~I~~~ 450 (787)
T PRK05306 446 AILLQ 450 (787)
T ss_pred hhhhh
Confidence 99864
No 180
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.81 E-value=1.5e-19 Score=117.08 Aligned_cols=154 Identities=21% Similarity=0.217 Sum_probs=120.4
Q ss_pred ccCCCCCceeeeec-------eeeeeeeeeEEE-EEEEE---CCEEEEEEEcCCCCCc-hhhHHhhccCCCEEEEEEECC
Q 030931 4 VKQPYCTSCTLVKF-------YLLFLLLVRFNV-EKVQY---KNVIFTVWDVGGQEKL-RPLWRHYFNNTDGLIYVVDSL 71 (169)
Q Consensus 4 ~~~~~~Ktsll~~f-------~~~~~~t~~~~~-~~~~~---~~~~~~i~D~~G~~~~-~~~~~~~~~~~~~ii~v~d~~ 71 (169)
+--+.|||+|+.++ ...+.||+...+ ..++. ....+.++||.|.... ..+-.+|++-+|++++||+..
T Consensus 16 G~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~ 95 (198)
T KOG3883|consen 16 GMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPM 95 (198)
T ss_pred CCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCceEEEEecCC
Confidence 34578999999986 456678887433 33444 3567999999998877 566788999999999999999
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931 72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS 151 (169)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (169)
++++|+.+..+..++-+......+|+++++||+|+.++ .++.......|++...+..++++|.+...+.+.|..++.
T Consensus 96 d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p---~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf~~l~~ 172 (198)
T KOG3883|consen 96 DPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEP---REVDMDVAQIWAKREKVKLWEVTAMDRPSLYEPFTYLAS 172 (198)
T ss_pred CHHHHHHHHHHHHHHhhccccccccEEEEechhhcccc---hhcCHHHHHHHHhhhheeEEEEEeccchhhhhHHHHHHH
Confidence 99999988766666655556678999999999999654 333333444566777788999999999999999999999
Q ss_pred HHHhhhccc
Q 030931 152 TLKEMRAAG 160 (169)
Q Consensus 152 ~~~~~~~~~ 160 (169)
.+.+++...
T Consensus 173 rl~~pqskS 181 (198)
T KOG3883|consen 173 RLHQPQSKS 181 (198)
T ss_pred hccCCcccc
Confidence 988875443
No 181
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.81 E-value=5.1e-20 Score=129.07 Aligned_cols=114 Identities=12% Similarity=0.048 Sum_probs=76.3
Q ss_pred EEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh---
Q 030931 37 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM--- 113 (169)
Q Consensus 37 ~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~--- 113 (169)
..+.+|||||++.+...+...+..+|++++|+|++++.........+..+ ... ...|+++|+||+|+.+.....
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~-~~~--~~~~iiivvNK~Dl~~~~~~~~~~ 159 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAAL-EIM--GLKHIIIVQNKIDLVKEEQALENY 159 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHH-HHc--CCCcEEEEEEchhccCHHHHHHHH
Confidence 78999999999988888888888999999999998631111111122222 111 235799999999986432211
Q ss_pred -HHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHh
Q 030931 114 -EVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE 155 (169)
Q Consensus 114 -~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 155 (169)
++.+.+.. .....++++++||++|+|++++|+++.+.+.+
T Consensus 160 ~~i~~~~~~--~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 160 EQIKKFVKG--TIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHHhc--cccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 12221110 01224579999999999999999999886654
No 182
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.81 E-value=1.3e-19 Score=143.89 Aligned_cols=147 Identities=16% Similarity=0.028 Sum_probs=103.9
Q ss_pred ccccCCCCCceeeeecee--------e--eeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931 2 LRVKQPYCTSCTLVKFYL--------L--FLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL 71 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~--------~--~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~ 71 (169)
+.+..++|||||++++.. + ...|+.+.+..+..++..+.+||+|||++|.......+.++|++++|+|++
T Consensus 5 iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~ 84 (581)
T TIGR00475 5 TAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDAD 84 (581)
T ss_pred EECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECC
Confidence 456889999999998842 1 234555666667778899999999999999888888899999999999998
Q ss_pred C---hhhHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCCHh----HHHhhhCCCCCCCceeEEEEeeeccCCCHH
Q 030931 72 D---RERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKGAMTPM----EVCEGLGLFDLKNRKWHIQGTCALKGDGLY 143 (169)
Q Consensus 72 ~---~~~~~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 143 (169)
+ +.+++.+ . ++.. .++| +++|+||+|+.+....+ ++.+.+.... ...+++++++||++|.|++
T Consensus 85 ~G~~~qT~ehl----~-il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~-~~~~~~ii~vSA~tG~GI~ 155 (581)
T TIGR00475 85 EGVMTQTGEHL----A-VLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYI-FLKNAKIFKTSAKTGQGIG 155 (581)
T ss_pred CCCcHHHHHHH----H-HHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhC-CCCCCcEEEEeCCCCCCch
Confidence 7 3333322 2 2221 2566 99999999996532111 1212111000 0114679999999999999
Q ss_pred HHHHHHHHHHHhhh
Q 030931 144 EGLDWLASTLKEMR 157 (169)
Q Consensus 144 ~~~~~l~~~~~~~~ 157 (169)
++++++...+....
T Consensus 156 eL~~~L~~l~~~~~ 169 (581)
T TIGR00475 156 ELKKELKNLLESLD 169 (581)
T ss_pred hHHHHHHHHHHhCC
Confidence 99999987766543
No 183
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.81 E-value=1.3e-19 Score=120.67 Aligned_cols=133 Identities=21% Similarity=0.162 Sum_probs=95.4
Q ss_pred ccccCCCCCceeeeec-------eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchh------hHHhhc--cCCCEEEE
Q 030931 2 LRVKQPYCTSCTLVKF-------YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRP------LWRHYF--NNTDGLIY 66 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-------~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~--~~~~~ii~ 66 (169)
|.+++.+|||||+|++ .+.+..|+......+..++..+.++|+||...... ....++ ...|++++
T Consensus 5 lvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~ 84 (156)
T PF02421_consen 5 LVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIV 84 (156)
T ss_dssp EEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEE
T ss_pred EECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEE
Confidence 5679999999999976 44566677777888899999999999999765432 223343 58999999
Q ss_pred EEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC----CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCH
Q 030931 67 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA----MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGL 142 (169)
Q Consensus 67 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 142 (169)
|+|+++.++- ..+..++++ .++|+++++||+|.... .+.+.+.+.++ ++++++||++++|+
T Consensus 85 VvDa~~l~r~---l~l~~ql~e----~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg--------~pvi~~sa~~~~g~ 149 (156)
T PF02421_consen 85 VVDATNLERN---LYLTLQLLE----LGIPVVVVLNKMDEAERKGIEIDAEKLSERLG--------VPVIPVSARTGEGI 149 (156)
T ss_dssp EEEGGGHHHH---HHHHHHHHH----TTSSEEEEEETHHHHHHTTEEE-HHHHHHHHT--------S-EEEEBTTTTBTH
T ss_pred ECCCCCHHHH---HHHHHHHHH----cCCCEEEEEeCHHHHHHcCCEECHHHHHHHhC--------CCEEEEEeCCCcCH
Confidence 9999875433 334444433 26999999999997432 24556666664 46999999999999
Q ss_pred HHHHHHH
Q 030931 143 YEGLDWL 149 (169)
Q Consensus 143 ~~~~~~l 149 (169)
+++++.+
T Consensus 150 ~~L~~~I 156 (156)
T PF02421_consen 150 DELKDAI 156 (156)
T ss_dssp HHHHHHH
T ss_pred HHHHhhC
Confidence 9999875
No 184
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.80 E-value=3.8e-19 Score=144.61 Aligned_cols=149 Identities=11% Similarity=-0.032 Sum_probs=100.9
Q ss_pred ccccCCCCCceeeeeceee--------eeeeeeEEEEEEEECCEEEEEEEcCCCCC----------chhhH-HhhccCCC
Q 030931 2 LRVKQPYCTSCTLVKFYLL--------FLLLVRFNVEKVQYKNVIFTVWDVGGQEK----------LRPLW-RHYFNNTD 62 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~--------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~-~~~~~~~~ 62 (169)
+++.+++|||||++++... ...|.......+.+++..+.+|||||..+ +..+. ..+++.+|
T Consensus 455 ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~ad 534 (712)
T PRK09518 455 LVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSE 534 (712)
T ss_pred EECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCC
Confidence 5789999999999987322 22233333345666788899999999642 11111 23478999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCH
Q 030931 63 GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGL 142 (169)
Q Consensus 63 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 142 (169)
++++|+|+++..++.... ++..+.+ .+.|+++|+||+|+.+....+.+...+..........+++++||++|.|+
T Consensus 535 vvilViDat~~~s~~~~~-i~~~~~~----~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv 609 (712)
T PRK09518 535 LALFLFDASQPISEQDLK-VMSMAVD----AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAKTGWHT 609 (712)
T ss_pred EEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECCCCCCH
Confidence 999999999887777654 3334332 36899999999999654332333322221111122346799999999999
Q ss_pred HHHHHHHHHHHHh
Q 030931 143 YEGLDWLASTLKE 155 (169)
Q Consensus 143 ~~~~~~l~~~~~~ 155 (169)
+++++.+.+...+
T Consensus 610 ~~L~~~i~~~~~~ 622 (712)
T PRK09518 610 NRLAPAMQEALES 622 (712)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987765
No 185
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.80 E-value=1e-18 Score=135.36 Aligned_cols=149 Identities=13% Similarity=0.019 Sum_probs=99.7
Q ss_pred ccccCCCCCceeeeeceee--------eeeeeeEEEEEEEECCEEEEEEEcCCCCCchhh-----------HHhhccCCC
Q 030931 2 LRVKQPYCTSCTLVKFYLL--------FLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPL-----------WRHYFNNTD 62 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~--------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----------~~~~~~~~~ 62 (169)
+++.+++|||||++++... ...|.......+...+..+.+|||||..+.... ...+++.+|
T Consensus 178 ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad 257 (435)
T PRK00093 178 IIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERAD 257 (435)
T ss_pred EECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCC
Confidence 5679999999999987321 122322233445567888999999997543221 123678999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCH
Q 030931 63 GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGL 142 (169)
Q Consensus 63 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 142 (169)
++++|+|+++..+..... ++..+.+ .+.|+++++||+|+.+.....++.+.+..........+++++||++|.|+
T Consensus 258 ~~ilViD~~~~~~~~~~~-i~~~~~~----~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv 332 (435)
T PRK00093 258 VVLLVIDATEGITEQDLR-IAGLALE----AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISALTGQGV 332 (435)
T ss_pred EEEEEEeCCCCCCHHHHH-HHHHHHH----cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeCCCCCCH
Confidence 999999998876655432 3333322 36899999999998743223333333322211223467999999999999
Q ss_pred HHHHHHHHHHHHh
Q 030931 143 YEGLDWLASTLKE 155 (169)
Q Consensus 143 ~~~~~~l~~~~~~ 155 (169)
+++++.+.+...+
T Consensus 333 ~~l~~~i~~~~~~ 345 (435)
T PRK00093 333 DKLLEAIDEAYEN 345 (435)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998875543
No 186
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.80 E-value=5e-19 Score=140.91 Aligned_cols=146 Identities=16% Similarity=0.158 Sum_probs=103.8
Q ss_pred ccccCCCCCceeeeeceee----------------------eeeeeeEEEEEEEE-----CCEEEEEEEcCCCCCchhhH
Q 030931 2 LRVKQPYCTSCTLVKFYLL----------------------FLLLVRFNVEKVQY-----KNVIFTVWDVGGQEKLRPLW 54 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~----------------------~~~t~~~~~~~~~~-----~~~~~~i~D~~G~~~~~~~~ 54 (169)
+++-.++|||||+.++-.. ...|+......+.+ ..+.+++|||||+..|...+
T Consensus 12 IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF~~~v 91 (600)
T PRK05433 12 IIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDFSYEV 91 (600)
T ss_pred EECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHHHHHH
Confidence 4567899999999987211 01122222233433 36899999999999999999
Q ss_pred HhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhCCCCCCCceeEE
Q 030931 55 RHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP---MEVCEGLGLFDLKNRKWHI 131 (169)
Q Consensus 55 ~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~ 131 (169)
..+++.+|++|+|+|+++.........|.... . .++|+++|+||+|+.+.... .++.+.++.. ...+
T Consensus 92 ~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~-~----~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~-----~~~v 161 (600)
T PRK05433 92 SRSLAACEGALLVVDASQGVEAQTLANVYLAL-E----NDLEIIPVLNKIDLPAADPERVKQEIEDVIGID-----ASDA 161 (600)
T ss_pred HHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----CCCCEEEEEECCCCCcccHHHHHHHHHHHhCCC-----cceE
Confidence 99999999999999998865555444444322 1 36899999999998654221 2333333221 1248
Q ss_pred EEeeeccCCCHHHHHHHHHHHHHhhh
Q 030931 132 QGTCALKGDGLYEGLDWLASTLKEMR 157 (169)
Q Consensus 132 ~~~Sa~~~~gi~~~~~~l~~~~~~~~ 157 (169)
+++||++|.|+.++++++.+.+..+.
T Consensus 162 i~iSAktG~GI~~Ll~~I~~~lp~P~ 187 (600)
T PRK05433 162 VLVSAKTGIGIEEVLEAIVERIPPPK 187 (600)
T ss_pred EEEecCCCCCHHHHHHHHHHhCcccc
Confidence 99999999999999999999887654
No 187
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.79 E-value=7.5e-19 Score=118.59 Aligned_cols=143 Identities=16% Similarity=0.097 Sum_probs=92.5
Q ss_pred ccccCCCCCceeeeeceeeee--------eeeeEEEEEEEECCEEEEEEEcCCCCCchh--------hHHhhccCCCEEE
Q 030931 2 LRVKQPYCTSCTLVKFYLLFL--------LLVRFNVEKVQYKNVIFTVWDVGGQEKLRP--------LWRHYFNNTDGLI 65 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~--------~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~~~~ii 65 (169)
+.+.+|+|||||++++..... .+.......+..++..+.+|||||...... .....+..+|+++
T Consensus 8 ~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~ 87 (168)
T cd04163 8 IVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVL 87 (168)
T ss_pred EECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEE
Confidence 567999999999998733221 111122223444678999999999765432 2344578899999
Q ss_pred EEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC-CCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHH
Q 030931 66 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG-AMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 144 (169)
Q Consensus 66 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 144 (169)
+|+|+++.. .....++...+.. .+.|+++++||+|+.. .....+....+.. .....+++++|++++.|+++
T Consensus 88 ~v~d~~~~~--~~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~~s~~~~~~~~~ 159 (168)
T cd04163 88 FVVDASEPI--GEGDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKE---LGPFAEIFPISALKGENVDE 159 (168)
T ss_pred EEEECCCcc--CchHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHh---ccCCCceEEEEeccCCChHH
Confidence 999998762 2222222222221 2589999999999863 2222222222211 11234689999999999999
Q ss_pred HHHHHHHH
Q 030931 145 GLDWLAST 152 (169)
Q Consensus 145 ~~~~l~~~ 152 (169)
+++++.+.
T Consensus 160 l~~~l~~~ 167 (168)
T cd04163 160 LLEEIVKY 167 (168)
T ss_pred HHHHHHhh
Confidence 99999764
No 188
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.79 E-value=8.9e-19 Score=133.03 Aligned_cols=154 Identities=15% Similarity=0.025 Sum_probs=105.4
Q ss_pred ccccCCCCCceeeeecee-------eeeeeeeEEEEEEEECC-EEEEEEEcCCCCCch-------hhHHhhccCCCEEEE
Q 030931 2 LRVKQPYCTSCTLVKFYL-------LFLLLVRFNVEKVQYKN-VIFTVWDVGGQEKLR-------PLWRHYFNNTDGLIY 66 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~-------~~~~t~~~~~~~~~~~~-~~~~i~D~~G~~~~~-------~~~~~~~~~~~~ii~ 66 (169)
|++.+.+|||||+|++.. .+.+|.......+.... ..+.++||||...-. ......++.++++++
T Consensus 164 lVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~ 243 (390)
T PRK12298 164 LLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLH 243 (390)
T ss_pred EEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEE
Confidence 467899999999998743 34556666666676654 569999999975321 112235788999999
Q ss_pred EEECC---ChhhHHHHHHHHHHHhcC-CCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCH
Q 030931 67 VVDSL---DRERIGKAKQEFQAIIKD-PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGL 142 (169)
Q Consensus 67 v~d~~---~~~~~~~~~~~~~~~~~~-~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 142 (169)
|+|++ +.+.++....|+.++... ....+.|+++|+||+|+.+.....+....+... .....+++++||+++.|+
T Consensus 244 VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~--~~~~~~Vi~ISA~tg~GI 321 (390)
T PRK12298 244 LIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEA--LGWEGPVYLISAASGLGV 321 (390)
T ss_pred EeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHH--hCCCCCEEEEECCCCcCH
Confidence 99998 455666666777666542 223468999999999986432222222221100 001124899999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 030931 143 YEGLDWLASTLKEMR 157 (169)
Q Consensus 143 ~~~~~~l~~~~~~~~ 157 (169)
+++++++...+.+..
T Consensus 322 deLl~~I~~~L~~~~ 336 (390)
T PRK12298 322 KELCWDLMTFIEENP 336 (390)
T ss_pred HHHHHHHHHHhhhCc
Confidence 999999999887653
No 189
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.79 E-value=5.2e-19 Score=142.36 Aligned_cols=146 Identities=17% Similarity=0.122 Sum_probs=99.5
Q ss_pred ccccCCCCCceeeeeceee-------eeeeeeEEEEEE--EE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEEC
Q 030931 2 LRVKQPYCTSCTLVKFYLL-------FLLLVRFNVEKV--QY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDS 70 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~-------~~~t~~~~~~~~--~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~ 70 (169)
+++-.++|||||++++... ...|..+....+ .. .+..+.+||||||+.|..++..+++.+|++|+|+|+
T Consensus 249 IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA 328 (742)
T CHL00189 249 ILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAA 328 (742)
T ss_pred EECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEEC
Confidence 5678899999999987322 123333223333 22 468999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCC--CC--CceeEEEEeeeccCCCHHHHH
Q 030931 71 LDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFD--LK--NRKWHIQGTCALKGDGLYEGL 146 (169)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~Sa~~~~gi~~~~ 146 (169)
++........ .+..+ . ..++|+++++||+|+.+. ...++...+.... .. ...++++++||++|.|+.+++
T Consensus 329 ~dGv~~QT~E-~I~~~-k---~~~iPiIVViNKiDl~~~-~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLl 402 (742)
T CHL00189 329 DDGVKPQTIE-AINYI-Q---AANVPIIVAINKIDKANA-NTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLL 402 (742)
T ss_pred cCCCChhhHH-HHHHH-H---hcCceEEEEEECCCcccc-CHHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHH
Confidence 7742222111 12222 1 246899999999999753 2333333321110 01 123679999999999999999
Q ss_pred HHHHHHH
Q 030931 147 DWLASTL 153 (169)
Q Consensus 147 ~~l~~~~ 153 (169)
+++....
T Consensus 403 e~I~~l~ 409 (742)
T CHL00189 403 ETILLLA 409 (742)
T ss_pred Hhhhhhh
Confidence 9998764
No 190
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.79 E-value=1.1e-18 Score=141.98 Aligned_cols=142 Identities=15% Similarity=0.098 Sum_probs=94.5
Q ss_pred ccccCCCCCceeeeeceeee--------eeeeeEEEEEEEECCEEEEEEEcCCCCC--------chhhHHhhccCCCEEE
Q 030931 2 LRVKQPYCTSCTLVKFYLLF--------LLLVRFNVEKVQYKNVIFTVWDVGGQEK--------LRPLWRHYFNNTDGLI 65 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~--------~~t~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~~~~~ii 65 (169)
+++.+++|||||++++.... ..|.........+++..+.+|||||.+. +......+++.+|+++
T Consensus 280 IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL 359 (712)
T PRK09518 280 IVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVV 359 (712)
T ss_pred EECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEE
Confidence 56799999999999884321 1222223334556788999999999764 2334556789999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHH
Q 030931 66 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG 145 (169)
Q Consensus 66 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 145 (169)
+|+|.++...... ..|...+ +. .+.|+++|+||+|+.... ....+..... .+ ..+++||++|.|+.++
T Consensus 360 ~VvDa~~~~~~~d-~~i~~~L-r~---~~~pvIlV~NK~D~~~~~--~~~~~~~~lg----~~-~~~~iSA~~g~GI~eL 427 (712)
T PRK09518 360 FVVDGQVGLTSTD-ERIVRML-RR---AGKPVVLAVNKIDDQASE--YDAAEFWKLG----LG-EPYPISAMHGRGVGDL 427 (712)
T ss_pred EEEECCCCCCHHH-HHHHHHH-Hh---cCCCEEEEEECcccccch--hhHHHHHHcC----CC-CeEEEECCCCCCchHH
Confidence 9999976322111 1233333 22 478999999999985431 1112211111 01 2578999999999999
Q ss_pred HHHHHHHHHh
Q 030931 146 LDWLASTLKE 155 (169)
Q Consensus 146 ~~~l~~~~~~ 155 (169)
+++++..+.+
T Consensus 428 l~~i~~~l~~ 437 (712)
T PRK09518 428 LDEALDSLKV 437 (712)
T ss_pred HHHHHHhccc
Confidence 9999998765
No 191
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.79 E-value=1.3e-18 Score=124.15 Aligned_cols=142 Identities=19% Similarity=0.080 Sum_probs=96.3
Q ss_pred ccccCCCCCceeeeeceeee-------eeeeeEEEEEEEECCEEEEEEEcCCCCCch-------hhHHhhccCCCEEEEE
Q 030931 2 LRVKQPYCTSCTLVKFYLLF-------LLLVRFNVEKVQYKNVIFTVWDVGGQEKLR-------PLWRHYFNNTDGLIYV 67 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~-------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~~~ii~v 67 (169)
|++.+++|||||++++.... .+|.......+.+++..+++||+||+.... .....+++.+|++++|
T Consensus 5 lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V 84 (233)
T cd01896 5 LVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLILMV 84 (233)
T ss_pred EECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEEEEE
Confidence 56789999999999884332 345555556677789999999999975432 2334578999999999
Q ss_pred EECCChhh-HHHHHHHHH----------------------------------------HHhcC-----------------
Q 030931 68 VDSLDRER-IGKAKQEFQ----------------------------------------AIIKD----------------- 89 (169)
Q Consensus 68 ~d~~~~~~-~~~~~~~~~----------------------------------------~~~~~----------------- 89 (169)
+|++++.. ...+...+. .++++
T Consensus 85 ~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~~~~ 164 (233)
T cd01896 85 LDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDITVD 164 (233)
T ss_pred ecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCCCHH
Confidence 99987542 222222221 11110
Q ss_pred -------CCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHH
Q 030931 90 -------PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL 153 (169)
Q Consensus 90 -------~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~ 153 (169)
.....+|+++|+||+|+.+. ++... +. . ..+++++||+++.|++++|+.+.+.+
T Consensus 165 ~~~~~~~~~~~y~p~iiV~NK~Dl~~~---~~~~~-~~----~--~~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 165 DLIDVIEGNRVYIPCLYVYNKIDLISI---EELDL-LA----R--QPNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred HHHHHHhCCceEeeEEEEEECccCCCH---HHHHH-Hh----c--CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 11234799999999998533 33332 21 1 12489999999999999999998755
No 192
>PRK00089 era GTPase Era; Reviewed
Probab=99.78 E-value=1.5e-18 Score=127.92 Aligned_cols=148 Identities=21% Similarity=0.188 Sum_probs=95.6
Q ss_pred ccccCCCCCceeeeeceeeeeeee-------eEEEEE-EEECCEEEEEEEcCCCCCch--------hhHHhhccCCCEEE
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLV-------RFNVEK-VQYKNVIFTVWDVGGQEKLR--------PLWRHYFNNTDGLI 65 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~-------~~~~~~-~~~~~~~~~i~D~~G~~~~~--------~~~~~~~~~~~~ii 65 (169)
|++.+|+|||||+|++.....+.+ ...... ...++..+.+|||||..... ......+..+|+++
T Consensus 10 iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il 89 (292)
T PRK00089 10 IVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVL 89 (292)
T ss_pred EECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEE
Confidence 678999999999998743322111 111122 23356899999999975432 22334678999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC-CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHH
Q 030931 66 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA-MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 144 (169)
Q Consensus 66 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 144 (169)
+|+|+++.. .....++...+.. .+.|+++|+||+|+... ....+..+.+.. .....+++++||+++.|+++
T Consensus 90 ~vvd~~~~~--~~~~~~i~~~l~~---~~~pvilVlNKiDl~~~~~~l~~~~~~l~~---~~~~~~i~~iSA~~~~gv~~ 161 (292)
T PRK00089 90 FVVDADEKI--GPGDEFILEKLKK---VKTPVILVLNKIDLVKDKEELLPLLEELSE---LMDFAEIVPISALKGDNVDE 161 (292)
T ss_pred EEEeCCCCC--ChhHHHHHHHHhh---cCCCEEEEEECCcCCCCHHHHHHHHHHHHh---hCCCCeEEEecCCCCCCHHH
Confidence 999998732 2222333333331 36899999999999632 122222222221 11134699999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030931 145 GLDWLASTLKEMR 157 (169)
Q Consensus 145 ~~~~l~~~~~~~~ 157 (169)
+++++.+.+.+..
T Consensus 162 L~~~L~~~l~~~~ 174 (292)
T PRK00089 162 LLDVIAKYLPEGP 174 (292)
T ss_pred HHHHHHHhCCCCC
Confidence 9999999876543
No 193
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.78 E-value=2.4e-18 Score=123.00 Aligned_cols=148 Identities=19% Similarity=0.190 Sum_probs=104.2
Q ss_pred ccccCCCCCceeeeecee-------------------------eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHh
Q 030931 2 LRVKQPYCTSCTLVKFYL-------------------------LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRH 56 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~-------------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 56 (169)
+++..++|||||++++.. ....|+......+.++++++++|||||+..|...+..
T Consensus 4 i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~ 83 (237)
T cd04168 4 ILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAEVER 83 (237)
T ss_pred EEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHHHHH
Confidence 567899999999997611 1111233445667889999999999999999999999
Q ss_pred hccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCC------------
Q 030931 57 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT---PMEVCEGLGL------------ 121 (169)
Q Consensus 57 ~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---~~~~~~~~~~------------ 121 (169)
+++.+|++++|+|.++.... ....++..+.+ .++|+++++||+|+..+.. .+++.+.++.
T Consensus 84 ~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~----~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~~~~ 158 (237)
T cd04168 84 SLSVLDGAILVISAVEGVQA-QTRILWRLLRK----LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVGLAP 158 (237)
T ss_pred HHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCcEee
Confidence 99999999999999875433 23344444322 3689999999999864210 0111111110
Q ss_pred ------------------------------C--------------CCCCceeEEEEeeeccCCCHHHHHHHHHHHHH
Q 030931 122 ------------------------------F--------------DLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 154 (169)
Q Consensus 122 ------------------------------~--------------~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 154 (169)
. .....-+|++..||.++.|+..+++.+.+.++
T Consensus 159 ~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p 235 (237)
T cd04168 159 NICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLFP 235 (237)
T ss_pred eeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhcC
Confidence 0 01223468899999999999999999998764
No 194
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.78 E-value=1.1e-18 Score=120.89 Aligned_cols=148 Identities=20% Similarity=0.150 Sum_probs=103.0
Q ss_pred ccccCCCCCceeeeece-------------------------eeeeeeeeEEEEEEE--ECCEEEEEEEcCCCCCchhhH
Q 030931 2 LRVKQPYCTSCTLVKFY-------------------------LLFLLLVRFNVEKVQ--YKNVIFTVWDVGGQEKLRPLW 54 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~-------------------------~~~~~t~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~ 54 (169)
+++..++|||||+.++. ....-|+......+. ...+.+.++||||+..|....
T Consensus 8 i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~f~~~~ 87 (188)
T PF00009_consen 8 IIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHEDFIKEM 87 (188)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHHHHHHH
T ss_pred EECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccceeecc
Confidence 46788999999999651 112334445667777 889999999999999998888
Q ss_pred HhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhh-CCCCCCC-cee
Q 030931 55 RHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT---PMEVCEGL-GLFDLKN-RKW 129 (169)
Q Consensus 55 ~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---~~~~~~~~-~~~~~~~-~~~ 129 (169)
...++.+|++|+|+|+.+..... ....+..+.. .+.|+++|+||+|+....- .+++...+ ....... ..+
T Consensus 88 ~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~----~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 162 (188)
T PF00009_consen 88 IRGLRQADIAILVVDANDGIQPQ-TEEHLKILRE----LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENGEEIV 162 (188)
T ss_dssp HHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHH----TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTTTSTE
T ss_pred cceecccccceeeeecccccccc-cccccccccc----cccceEEeeeeccchhhhHHHHHHHHHHHhccccccCccccc
Confidence 88899999999999997653322 2333333322 3688999999999872111 12222122 0011122 357
Q ss_pred EEEEeeeccCCCHHHHHHHHHHHHH
Q 030931 130 HIQGTCALKGDGLYEGLDWLASTLK 154 (169)
Q Consensus 130 ~~~~~Sa~~~~gi~~~~~~l~~~~~ 154 (169)
+++++||.+|.|+.++++.+.+.++
T Consensus 163 ~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 163 PVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp EEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred eEEEEecCCCCCHHHHHHHHHHhCc
Confidence 8999999999999999999988764
No 195
>PRK10218 GTP-binding protein; Provisional
Probab=99.77 E-value=4.2e-18 Score=135.30 Aligned_cols=151 Identities=13% Similarity=0.076 Sum_probs=106.3
Q ss_pred ccccCCCCCceeeeecee-------e----------------eeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhc
Q 030931 2 LRVKQPYCTSCTLVKFYL-------L----------------FLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYF 58 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~-------~----------------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 58 (169)
+++-.++|||||+.++.. . ...|+......+.++++++++|||||+..|...+..++
T Consensus 10 IiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~v~~~l 89 (607)
T PRK10218 10 IIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEVERVM 89 (607)
T ss_pred EECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHHHHHHH
Confidence 466889999999998721 1 11222233445677899999999999999999999999
Q ss_pred cCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhCC-CCC-CCceeEEEE
Q 030931 59 NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP---MEVCEGLGL-FDL-KNRKWHIQG 133 (169)
Q Consensus 59 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~---~~~~~~~~~-~~~-~~~~~~~~~ 133 (169)
+.+|++++|+|+++.... ....++..... .++|.++++||+|+.++... .++.+.+.. ... ....++++.
T Consensus 90 ~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~PVi~ 164 (607)
T PRK10218 90 SMVDSVLLVVDAFDGPMP-QTRFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVY 164 (607)
T ss_pred HhCCEEEEEEecccCccH-HHHHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCCCEEE
Confidence 999999999999764322 23333333332 36889999999999765432 233333211 111 224578999
Q ss_pred eeeccCC----------CHHHHHHHHHHHHHhhh
Q 030931 134 TCALKGD----------GLYEGLDWLASTLKEMR 157 (169)
Q Consensus 134 ~Sa~~~~----------gi~~~~~~l~~~~~~~~ 157 (169)
+||++|. |+..+++.++..++.+.
T Consensus 165 ~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~ 198 (607)
T PRK10218 165 ASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPD 198 (607)
T ss_pred eEhhcCcccCCccccccchHHHHHHHHHhCCCCC
Confidence 9999998 58899998888877653
No 196
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.77 E-value=1.3e-18 Score=121.18 Aligned_cols=147 Identities=16% Similarity=0.075 Sum_probs=90.7
Q ss_pred ccccCCCCCceeeeecee-----eeeeeeeEEE--EEEEECCEEEEEEEcCCCC----------CchhhHHhhccCC---
Q 030931 2 LRVKQPYCTSCTLVKFYL-----LFLLLVRFNV--EKVQYKNVIFTVWDVGGQE----------KLRPLWRHYFNNT--- 61 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~-----~~~~t~~~~~--~~~~~~~~~~~i~D~~G~~----------~~~~~~~~~~~~~--- 61 (169)
|++.+|+|||||++++.. .+.++.+.+. .... -+..+.+|||||.. .+..+...+++.+
T Consensus 29 ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (196)
T PRK00454 29 FAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE-VNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENL 107 (196)
T ss_pred EEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe-cCCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccc
Confidence 678999999999998743 2233433211 1112 24789999999953 2333444555544
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCC
Q 030931 62 DGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDG 141 (169)
Q Consensus 62 ~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 141 (169)
+++++|+|.+++.+... .++...++. .+.|+++++||+|+.+....+.....+. ........+++++||++++|
T Consensus 108 ~~~~~v~d~~~~~~~~~--~~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~-~~l~~~~~~~~~~Sa~~~~g 181 (196)
T PRK00454 108 KGVVLLIDSRHPLKELD--LQMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVR-KALKFGDDEVILFSSLKKQG 181 (196)
T ss_pred eEEEEEEecCCCCCHHH--HHHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHH-HHHHhcCCceEEEEcCCCCC
Confidence 67888899876543322 122222221 3689999999999864322222221111 01111245689999999999
Q ss_pred HHHHHHHHHHHHHh
Q 030931 142 LYEGLDWLASTLKE 155 (169)
Q Consensus 142 i~~~~~~l~~~~~~ 155 (169)
++++++.+...+.+
T Consensus 182 i~~l~~~i~~~~~~ 195 (196)
T PRK00454 182 IDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999887654
No 197
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.77 E-value=2.2e-18 Score=136.95 Aligned_cols=151 Identities=12% Similarity=0.116 Sum_probs=110.3
Q ss_pred ccccCCCCCceeeeece-------ee----------------eeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhc
Q 030931 2 LRVKQPYCTSCTLVKFY-------LL----------------FLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYF 58 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~-------~~----------------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 58 (169)
+++-.++|||||+.++- .. ...|+......+.+.++++++||||||..|...+..++
T Consensus 6 IiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~~~l 85 (594)
T TIGR01394 6 IIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVERVL 85 (594)
T ss_pred EEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHHHHH
Confidence 45678999999999761 11 12344455566888999999999999999999999999
Q ss_pred cCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhCCCCC--CCceeEEEE
Q 030931 59 NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP---MEVCEGLGLFDL--KNRKWHIQG 133 (169)
Q Consensus 59 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~---~~~~~~~~~~~~--~~~~~~~~~ 133 (169)
+.+|++++|+|+++. .......|+..+.. .++|+++|+||+|+.+.... .++.+.+..... +...+++++
T Consensus 86 ~~aD~alLVVDa~~G-~~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pvl~ 160 (594)
T TIGR01394 86 GMVDGVLLLVDASEG-PMPQTRFVLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPIVY 160 (594)
T ss_pred HhCCEEEEEEeCCCC-CcHHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcEEe
Confidence 999999999999763 34555666666643 36899999999998654321 222222211001 233578999
Q ss_pred eeeccCC----------CHHHHHHHHHHHHHhhh
Q 030931 134 TCALKGD----------GLYEGLDWLASTLKEMR 157 (169)
Q Consensus 134 ~Sa~~~~----------gi~~~~~~l~~~~~~~~ 157 (169)
+||++|. |+..+|+.++..+....
T Consensus 161 ~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~ 194 (594)
T TIGR01394 161 ASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPK 194 (594)
T ss_pred chhhcCcccccCcccccCHHHHHHHHHHhCCCCC
Confidence 9999996 79999999998887654
No 198
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.76 E-value=3.4e-18 Score=135.43 Aligned_cols=145 Identities=17% Similarity=0.064 Sum_probs=96.4
Q ss_pred ccccCCCCCceeeeeceee---------eeeeeeEEEEEEEEC----------------CEEEEEEEcCCCCCchhhHHh
Q 030931 2 LRVKQPYCTSCTLVKFYLL---------FLLLVRFNVEKVQYK----------------NVIFTVWDVGGQEKLRPLWRH 56 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~---------~~~t~~~~~~~~~~~----------------~~~~~i~D~~G~~~~~~~~~~ 56 (169)
+++..++|||||++++... ..+++|..+...+.. ...+.+||||||+.|..++..
T Consensus 9 IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l~~~ 88 (590)
T TIGR00491 9 VLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTNLRKR 88 (590)
T ss_pred EECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHHHHHH
Confidence 5678999999999987321 233444443332211 123889999999999999999
Q ss_pred hccCCCEEEEEEECCC---hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--------------CHhHHH---
Q 030931 57 YFNNTDGLIYVVDSLD---RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--------------TPMEVC--- 116 (169)
Q Consensus 57 ~~~~~~~ii~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--------------~~~~~~--- 116 (169)
+++.+|++++|+|+++ +.+++.+. .+ +. .+.|+++++||+|+.+.. ....+.
T Consensus 89 ~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l-~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~ 160 (590)
T TIGR00491 89 GGALADLAILIVDINEGFKPQTQEALN----IL-RM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNL 160 (590)
T ss_pred HHhhCCEEEEEEECCcCCCHhHHHHHH----HH-HH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHHHH
Confidence 9999999999999986 44444332 11 11 368999999999986311 011110
Q ss_pred -----------hhhCCCCC-------CCceeEEEEeeeccCCCHHHHHHHHHHHHH
Q 030931 117 -----------EGLGLFDL-------KNRKWHIQGTCALKGDGLYEGLDWLASTLK 154 (169)
Q Consensus 117 -----------~~~~~~~~-------~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 154 (169)
...++... -....+++++||++|+|+++++.++.....
T Consensus 161 ~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~ 216 (590)
T TIGR00491 161 DTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQ 216 (590)
T ss_pred HHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHH
Confidence 11111100 112468999999999999999998875443
No 199
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=5.6e-19 Score=115.80 Aligned_cols=149 Identities=26% Similarity=0.423 Sum_probs=125.4
Q ss_pred ccCCCCCceeeeec----eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHH
Q 030931 4 VKQPYCTSCTLVKF----YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKA 79 (169)
Q Consensus 4 ~~~~~~Ktsll~~f----~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~ 79 (169)
+=+..|||||++.+ -.+..||...+...+..++++++.+|.+||..-+..|..|+-.++++++.+|+-|.++|.+.
T Consensus 27 GLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es 106 (193)
T KOG0077|consen 27 GLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAES 106 (193)
T ss_pred eecCCchhhHHHHHccccccccCCCcCCChHHheecCceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHH
Confidence 45789999999976 35778999998899999999999999999998889999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC------------CCCCceeEEEEeeeccCCCHHHHHH
Q 030931 80 KQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF------------DLKNRKWHIQGTCALKGDGLYEGLD 147 (169)
Q Consensus 80 ~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~Sa~~~~gi~~~~~ 147 (169)
+..++.++........|+++.+||+|.+.+.+.++....+++. ....+....+-||...+.|-.+.|.
T Consensus 107 ~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~~gy~e~fk 186 (193)
T KOG0077|consen 107 KKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGFK 186 (193)
T ss_pred HHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEccCccceeee
Confidence 9999998887777899999999999998877655544433321 1123456789999999999889888
Q ss_pred HHHHH
Q 030931 148 WLAST 152 (169)
Q Consensus 148 ~l~~~ 152 (169)
|+...
T Consensus 187 wl~qy 191 (193)
T KOG0077|consen 187 WLSQY 191 (193)
T ss_pred ehhhh
Confidence 87654
No 200
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.75 E-value=9.8e-18 Score=136.47 Aligned_cols=142 Identities=16% Similarity=0.070 Sum_probs=98.3
Q ss_pred ccccCCCCCceeeeecee-------eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhh----------HHhhc--cCCC
Q 030931 2 LRVKQPYCTSCTLVKFYL-------LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPL----------WRHYF--NNTD 62 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~-------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----------~~~~~--~~~~ 62 (169)
|.+++++|||||+|++.. ....|+......+..++.++++|||||++.+... ...++ ..+|
T Consensus 8 LvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD 87 (772)
T PRK09554 8 LIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDAD 87 (772)
T ss_pred EECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHhccCCC
Confidence 567999999999998733 2334554555567778899999999999876431 22333 4899
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCH
Q 030931 63 GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGL 142 (169)
Q Consensus 63 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 142 (169)
++++|+|.++.++- ..+..++.+ .+.|+++++||+|+.+........+.+. +..+++++++||++|+|+
T Consensus 88 ~vI~VvDat~ler~---l~l~~ql~e----~giPvIvVlNK~Dl~~~~~i~id~~~L~----~~LG~pVvpiSA~~g~GI 156 (772)
T PRK09554 88 LLINVVDASNLERN---LYLTLQLLE----LGIPCIVALNMLDIAEKQNIRIDIDALS----ARLGCPVIPLVSTRGRGI 156 (772)
T ss_pred EEEEEecCCcchhh---HHHHHHHHH----cCCCEEEEEEchhhhhccCcHHHHHHHH----HHhCCCEEEEEeecCCCH
Confidence 99999999886543 234444432 3689999999999864322111111111 223457999999999999
Q ss_pred HHHHHHHHHHHH
Q 030931 143 YEGLDWLASTLK 154 (169)
Q Consensus 143 ~~~~~~l~~~~~ 154 (169)
+++.+.+.+...
T Consensus 157 deL~~~I~~~~~ 168 (772)
T PRK09554 157 EALKLAIDRHQA 168 (772)
T ss_pred HHHHHHHHHhhh
Confidence 999999887653
No 201
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.75 E-value=2.8e-18 Score=132.48 Aligned_cols=143 Identities=15% Similarity=0.017 Sum_probs=93.4
Q ss_pred ccccCCCCCceeeeece-------e-------------------------------eeeeeeeEEEEEEEECCEEEEEEE
Q 030931 2 LRVKQPYCTSCTLVKFY-------L-------------------------------LFLLLVRFNVEKVQYKNVIFTVWD 43 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~-------~-------------------------------~~~~t~~~~~~~~~~~~~~~~i~D 43 (169)
+++..++|||||+.++. + ....|+......+..+++.+.+||
T Consensus 12 i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~~i~iiD 91 (426)
T TIGR00483 12 FIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKYEVTIVD 91 (426)
T ss_pred EEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCCeEEEEEE
Confidence 46688999999999761 1 113445555666777899999999
Q ss_pred cCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC------HhHHH
Q 030931 44 VGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMT------PMEVC 116 (169)
Q Consensus 44 ~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~------~~~~~ 116 (169)
||||+.|.......++.+|++++|+|+++.+.+.... .+...+.+.. ...|+++++||+|+.+... ..++.
T Consensus 92 tpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~--~~~~iIVviNK~Dl~~~~~~~~~~~~~ei~ 169 (426)
T TIGR00483 92 CPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL--GINQLIVAINKMDSVNYDEEEFEAIKKEVS 169 (426)
T ss_pred CCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc--CCCeEEEEEEChhccCccHHHHHHHHHHHH
Confidence 9999988776666788999999999998864321111 1111122211 2458999999999964211 11222
Q ss_pred hhhCCCCCCCceeEEEEeeeccCCCHHHHH
Q 030931 117 EGLGLFDLKNRKWHIQGTCALKGDGLYEGL 146 (169)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 146 (169)
+.+.........++++++||++|.|+.+.+
T Consensus 170 ~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 170 NLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred HHHHHcCCCcccceEEEeeccccccccccc
Confidence 222111112234689999999999998643
No 202
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.74 E-value=4.4e-18 Score=128.16 Aligned_cols=141 Identities=17% Similarity=0.108 Sum_probs=100.2
Q ss_pred ccccCCCCCceeeeec--------eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCch---------hhHHhhccCCCEE
Q 030931 2 LRVKQPYCTSCTLVKF--------YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLR---------PLWRHYFNNTDGL 64 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f--------~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~~~~~~i 64 (169)
|.+.+.+|||||+||+ .+.+..|-...+....+.+..+.+.||+|-+... .+....+..||++
T Consensus 8 IVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvi 87 (444)
T COG1160 8 IVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVI 87 (444)
T ss_pred EECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEE
Confidence 4679999999999987 3455555556778888999999999999976422 2344567899999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHH
Q 030931 65 IYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 144 (169)
Q Consensus 65 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 144 (169)
|||+|....-+ ...+.+.++++. .++|+++|+||+|..+......-...+++. +++.+||.+|.|+.+
T Consensus 88 lfvVD~~~Git--~~D~~ia~~Lr~---~~kpviLvvNK~D~~~~e~~~~efyslG~g-------~~~~ISA~Hg~Gi~d 155 (444)
T COG1160 88 LFVVDGREGIT--PADEEIAKILRR---SKKPVILVVNKIDNLKAEELAYEFYSLGFG-------EPVPISAEHGRGIGD 155 (444)
T ss_pred EEEEeCCCCCC--HHHHHHHHHHHh---cCCCEEEEEEcccCchhhhhHHHHHhcCCC-------CceEeehhhccCHHH
Confidence 99999965222 222233334331 368999999999976332211111222222 389999999999999
Q ss_pred HHHHHHHHHH
Q 030931 145 GLDWLASTLK 154 (169)
Q Consensus 145 ~~~~l~~~~~ 154 (169)
+++++...+.
T Consensus 156 Lld~v~~~l~ 165 (444)
T COG1160 156 LLDAVLELLP 165 (444)
T ss_pred HHHHHHhhcC
Confidence 9999999873
No 203
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.74 E-value=6.7e-18 Score=130.38 Aligned_cols=143 Identities=15% Similarity=0.085 Sum_probs=93.5
Q ss_pred ccccCCCCCceeeeece-------e-------------------------------eeeeeeeEEEEEEEECCEEEEEEE
Q 030931 2 LRVKQPYCTSCTLVKFY-------L-------------------------------LFLLLVRFNVEKVQYKNVIFTVWD 43 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~-------~-------------------------------~~~~t~~~~~~~~~~~~~~~~i~D 43 (169)
+++..++|||||++++. . ....|+...+..++.+++.+.+||
T Consensus 11 iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~~i~liD 90 (425)
T PRK12317 11 VIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKYYFTIVD 90 (425)
T ss_pred EECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCeEEEEEE
Confidence 46788999999999761 0 234455566667778899999999
Q ss_pred cCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC------HhHHHh
Q 030931 44 VGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT------PMEVCE 117 (169)
Q Consensus 44 ~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~------~~~~~~ 117 (169)
|||++.|.......++.+|++++|+|+++...+.....+...++... ...|+++++||+|+.+... .+++.+
T Consensus 91 tpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~~~~~~i~~ 168 (425)
T PRK12317 91 CPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYEEVKEEVSK 168 (425)
T ss_pred CCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHHHHHHHHHH
Confidence 99999887665566789999999999986322211111111222211 2357999999999965211 122222
Q ss_pred hhCCCCCCCceeEEEEeeeccCCCHHHHH
Q 030931 118 GLGLFDLKNRKWHIQGTCALKGDGLYEGL 146 (169)
Q Consensus 118 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 146 (169)
.+.........++++++||++|+|+.+..
T Consensus 169 ~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 169 LLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred HHHhhCCCcCcceEEEeecccCCCccccc
Confidence 22211112224679999999999998744
No 204
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.73 E-value=1.1e-19 Score=121.32 Aligned_cols=150 Identities=15% Similarity=0.179 Sum_probs=117.5
Q ss_pred cccCCCCCceeeeec-----eeeeeeeeeEEEE--EEEE---CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 3 RVKQPYCTSCTLVKF-----YLLFLLLVRFNVE--KVQY---KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 3 ~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~--~~~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
.+.-|.||||+++|+ +..|..|+|+.+. .+.+ .-+++++||++||++|..|...|++.+++..+|||+++
T Consensus 31 ig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~ 110 (229)
T KOG4423|consen 31 IGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTR 110 (229)
T ss_pred eeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEEEEEccc
Confidence 456799999999974 7889999997653 3444 45789999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcC---CCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCCCCCce-eEEEEeeeccCCCHHHH
Q 030931 73 RERIGKAKQEFQAIIKD---PFMLNSVILVFANKQDMKGAMT---PMEVCEGLGLFDLKNRK-WHIQGTCALKGDGLYEG 145 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~---~~~~~~piivv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~ 145 (169)
..+|+.+..|.+++... ......|+++..||||...... .+.+.+ +. +..+ ..++++|++.+.|+.|.
T Consensus 111 s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~-f~----kengf~gwtets~Kenkni~Ea 185 (229)
T KOG4423|consen 111 SLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDN-FK----KENGFEGWTETSAKENKNIPEA 185 (229)
T ss_pred cccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHH-HH----hccCccceeeeccccccChhHH
Confidence 99999999999988543 2333589999999999854211 122222 21 1222 24999999999999999
Q ss_pred HHHHHHHHHhhh
Q 030931 146 LDWLASTLKEMR 157 (169)
Q Consensus 146 ~~~l~~~~~~~~ 157 (169)
...+++.+.-..
T Consensus 186 ~r~lVe~~lvnd 197 (229)
T KOG4423|consen 186 QRELVEKILVND 197 (229)
T ss_pred HHHHHHHHHhhc
Confidence 999998766554
No 205
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=2.5e-16 Score=107.61 Aligned_cols=148 Identities=17% Similarity=0.213 Sum_probs=107.0
Q ss_pred ccCCCCCceeeeec----eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhcc---CCCEEEEEEECCC-hhh
Q 030931 4 VKQPYCTSCTLVKF----YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFN---NTDGLIYVVDSLD-RER 75 (169)
Q Consensus 4 ~~~~~~Ktsll~~f----~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~---~~~~ii~v~d~~~-~~~ 75 (169)
+=++||||+|+.++ .....+++..+...+..+.-...+.|.|||.+.+.....++. .+.++|||+|... ...
T Consensus 45 Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~ 124 (238)
T KOG0090|consen 45 GLSDSGKTSLFTQLITGSHRGTVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKN 124 (238)
T ss_pred ecCCCCceeeeeehhcCCccCeeeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccchh
Confidence 45799999999987 344455555677777778877999999999998887777777 7999999999853 334
Q ss_pred HHHHHHHHHHHhcCC--CCCCCeEEEEEeCCCCCCCCCHhHHHhh-----------------------------------
Q 030931 76 IGKAKQEFQAIIKDP--FMLNSVILVFANKQDMKGAMTPMEVCEG----------------------------------- 118 (169)
Q Consensus 76 ~~~~~~~~~~~~~~~--~~~~~piivv~nK~Dl~~~~~~~~~~~~----------------------------------- 118 (169)
...+.+++-+++-.. ....+|+++++||.|+..+.+.+.+.+.
T Consensus 125 vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~~tlg~~g~d 204 (238)
T KOG0090|consen 125 VRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAKDFTLGKEGED 204 (238)
T ss_pred hHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccc
Confidence 555665555555433 3567999999999999765442222111
Q ss_pred hCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHH
Q 030931 119 LGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAST 152 (169)
Q Consensus 119 ~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 152 (169)
+.+..++...+.+.++|++++ ++++.-+|+.+.
T Consensus 205 F~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 205 FKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred cchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 111122335567999999999 799999998765
No 206
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.72 E-value=5.8e-18 Score=116.45 Aligned_cols=133 Identities=13% Similarity=0.092 Sum_probs=81.0
Q ss_pred ccccCCCCCceeeeeceee-----eeeeeeEE--EEEEEECCEEEEEEEcCCCCC----------chhhHHhhcc---CC
Q 030931 2 LRVKQPYCTSCTLVKFYLL-----FLLLVRFN--VEKVQYKNVIFTVWDVGGQEK----------LRPLWRHYFN---NT 61 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~-----~~~t~~~~--~~~~~~~~~~~~i~D~~G~~~----------~~~~~~~~~~---~~ 61 (169)
+++.+|+|||||++++... +.++.+.+ ...+..+. .+.+|||||... +..+...+++ .+
T Consensus 23 ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 101 (179)
T TIGR03598 23 FAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND-GFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENL 101 (179)
T ss_pred EEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC-cEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhh
Confidence 5678999999999987332 22333321 11122222 699999999532 2233334554 35
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC----HhHHHhhhCCCCCCCceeEEEEeeec
Q 030931 62 DGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT----PMEVCEGLGLFDLKNRKWHIQGTCAL 137 (169)
Q Consensus 62 ~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~ 137 (169)
+++++|+|.+++.+.... .++. ++.. .+.|+++++||+|+.+... .+++.+.+... ...++++++||+
T Consensus 102 ~~ii~vvd~~~~~~~~~~-~~~~-~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~---~~~~~v~~~Sa~ 173 (179)
T TIGR03598 102 KGVVLLMDIRHPLKELDL-EMLE-WLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKD---ADDPSVQLFSSL 173 (179)
T ss_pred cEEEEEecCCCCCCHHHH-HHHH-HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhc---cCCCceEEEECC
Confidence 899999999775444433 2222 2222 3689999999999864322 22333333221 123469999999
Q ss_pred cCCCHH
Q 030931 138 KGDGLY 143 (169)
Q Consensus 138 ~~~gi~ 143 (169)
+|+|++
T Consensus 174 ~g~gi~ 179 (179)
T TIGR03598 174 KKTGID 179 (179)
T ss_pred CCCCCC
Confidence 999973
No 207
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.72 E-value=7.8e-17 Score=128.06 Aligned_cols=144 Identities=18% Similarity=0.064 Sum_probs=95.4
Q ss_pred ccccCCCCCceeeeecee---------eeeeeeeEEEEEEEEC----C-------E-----EEEEEEcCCCCCchhhHHh
Q 030931 2 LRVKQPYCTSCTLVKFYL---------LFLLLVRFNVEKVQYK----N-------V-----IFTVWDVGGQEKLRPLWRH 56 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~---------~~~~t~~~~~~~~~~~----~-------~-----~~~i~D~~G~~~~~~~~~~ 56 (169)
+++..++|||||++++.. ...+++|..+...+.. + . .+.+|||||++.|..++..
T Consensus 11 i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~ 90 (586)
T PRK04004 11 VLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFTNLRKR 90 (586)
T ss_pred EECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHHHHHHH
Confidence 567899999999998722 2234555444332210 0 1 2689999999999999998
Q ss_pred hccCCCEEEEEEECCC---hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--------------HhH-----
Q 030931 57 YFNNTDGLIYVVDSLD---RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--------------PME----- 114 (169)
Q Consensus 57 ~~~~~~~ii~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--------------~~~----- 114 (169)
.++.+|++++|+|+++ +.+++.+. .+ .. .+.|+++++||+|+..... ...
T Consensus 91 ~~~~aD~~IlVvDa~~g~~~qt~e~i~----~~-~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~~~f 162 (586)
T PRK04004 91 GGALADIAILVVDINEGFQPQTIEAIN----IL-KR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQQEL 162 (586)
T ss_pred hHhhCCEEEEEEECCCCCCHhHHHHHH----HH-HH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHHHHHH
Confidence 8999999999999987 45555443 12 11 3689999999999852110 011
Q ss_pred ------HHhhhC---CCCC-------CCceeEEEEeeeccCCCHHHHHHHHHHHH
Q 030931 115 ------VCEGLG---LFDL-------KNRKWHIQGTCALKGDGLYEGLDWLASTL 153 (169)
Q Consensus 115 ------~~~~~~---~~~~-------~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~ 153 (169)
+...+. +... -....+++++||++|+|+.+++..+...+
T Consensus 163 ~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 163 EEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred HHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 111111 1100 01346799999999999999998886533
No 208
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.72 E-value=2e-17 Score=126.87 Aligned_cols=115 Identities=17% Similarity=0.064 Sum_probs=78.1
Q ss_pred CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH---
Q 030931 36 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP--- 112 (169)
Q Consensus 36 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--- 112 (169)
...+.+||+|||+.|...+......+|++++|+|+++..........+..+ ... ...|+++++||+|+.+....
T Consensus 79 ~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~--gi~~iIVvvNK~Dl~~~~~~~~~ 155 (406)
T TIGR03680 79 LRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EII--GIKNIVIVQNKIDLVSKEKALEN 155 (406)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHc--CCCeEEEEEEccccCCHHHHHHH
Confidence 468999999999999888888888999999999998632112222222222 111 23579999999998653221
Q ss_pred -hHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHh
Q 030931 113 -MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE 155 (169)
Q Consensus 113 -~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 155 (169)
+++.+.+... ...+++++++||++|+|++++++++...+..
T Consensus 156 ~~~i~~~l~~~--~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~ 197 (406)
T TIGR03680 156 YEEIKEFVKGT--VAENAPIIPVSALHNANIDALLEAIEKFIPT 197 (406)
T ss_pred HHHHHhhhhhc--ccCCCeEEEEECCCCCChHHHHHHHHHhCCC
Confidence 1222211100 1125689999999999999999999987654
No 209
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.71 E-value=3.3e-17 Score=110.79 Aligned_cols=143 Identities=14% Similarity=0.047 Sum_probs=87.9
Q ss_pred ccccCCCCCceeeeece-----eeeeeeeeEE--EEEEEECCEEEEEEEcCCCCC----------chhhHHhhcc---CC
Q 030931 2 LRVKQPYCTSCTLVKFY-----LLFLLLVRFN--VEKVQYKNVIFTVWDVGGQEK----------LRPLWRHYFN---NT 61 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~-----~~~~~t~~~~--~~~~~~~~~~~~i~D~~G~~~----------~~~~~~~~~~---~~ 61 (169)
|++..|+|||||++.+. ....++.+.. ...+..+. .+.+|||||... +......++. .+
T Consensus 4 l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (170)
T cd01876 4 FAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND-KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENL 82 (170)
T ss_pred EEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC-eEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhh
Confidence 67899999999999764 2233333322 22233333 899999999543 2333344444 45
Q ss_pred CEEEEEEECCChhh--HHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCC-CCceeEEEEeeecc
Q 030931 62 DGLIYVVDSLDRER--IGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDL-KNRKWHIQGTCALK 138 (169)
Q Consensus 62 ~~ii~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~ 138 (169)
+++++++|..+..+ ...+.+|+... +.|+++++||+|+.................. .....+++++||++
T Consensus 83 ~~~~~v~d~~~~~~~~~~~~~~~l~~~-------~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~ 155 (170)
T cd01876 83 KGVVLLIDSRHGPTEIDLEMLDWLEEL-------GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLK 155 (170)
T ss_pred hEEEEEEEcCcCCCHhHHHHHHHHHHc-------CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCC
Confidence 78899999875532 22233444332 5799999999998543222222221110000 12334689999999
Q ss_pred CCCHHHHHHHHHHH
Q 030931 139 GDGLYEGLDWLAST 152 (169)
Q Consensus 139 ~~gi~~~~~~l~~~ 152 (169)
+.|+.++++++.+.
T Consensus 156 ~~~~~~l~~~l~~~ 169 (170)
T cd01876 156 GQGIDELRALIEKW 169 (170)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999999875
No 210
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.70 E-value=6.4e-17 Score=129.17 Aligned_cols=146 Identities=15% Similarity=0.062 Sum_probs=97.4
Q ss_pred cccCCCCCceeeeecee----------eeeeeeeEEEEEEEE-CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931 3 RVKQPYCTSCTLVKFYL----------LFLLLVRFNVEKVQY-KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL 71 (169)
Q Consensus 3 ~~~~~~~Ktsll~~f~~----------~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~ 71 (169)
.+..+.|||||++++.. ....|+...+..+.. .+..+.+||||||++|.......+.++|++++|+|++
T Consensus 6 ~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~ 85 (614)
T PRK10512 6 AGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACD 85 (614)
T ss_pred ECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECC
Confidence 45788999999998741 235566665555544 4577999999999999777777789999999999987
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCCHhH----HHhhhCCCCCCCceeEEEEeeeccCCCHHHHH
Q 030931 72 DRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKGAMTPME----VCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL 146 (169)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 146 (169)
+.. .....+.+. ++... +.| +++|+||+|+.+....++ +.+.+... .....+++++||++|+|+++++
T Consensus 86 eg~-~~qT~ehl~-il~~l---gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~--~~~~~~ii~VSA~tG~gI~~L~ 158 (614)
T PRK10512 86 DGV-MAQTREHLA-ILQLT---GNPMLTVALTKADRVDEARIAEVRRQVKAVLREY--GFAEAKLFVTAATEGRGIDALR 158 (614)
T ss_pred CCC-cHHHHHHHH-HHHHc---CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhc--CCCCCcEEEEeCCCCCCCHHHH
Confidence 632 112222222 22211 344 689999999864322222 22222110 1123579999999999999999
Q ss_pred HHHHHHHHh
Q 030931 147 DWLASTLKE 155 (169)
Q Consensus 147 ~~l~~~~~~ 155 (169)
+.+......
T Consensus 159 ~~L~~~~~~ 167 (614)
T PRK10512 159 EHLLQLPER 167 (614)
T ss_pred HHHHHhhcc
Confidence 999876544
No 211
>COG1159 Era GTPase [General function prediction only]
Probab=99.70 E-value=6.4e-17 Score=116.09 Aligned_cols=148 Identities=19% Similarity=0.103 Sum_probs=99.4
Q ss_pred ccccCCCCCceeeeeceeeeeeeee--------EEEEEEEECCEEEEEEEcCCCCCch--------hhHHhhccCCCEEE
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR--------FNVEKVQYKNVIFTVWDVGGQEKLR--------PLWRHYFNNTDGLI 65 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~--------~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~~~~~~~ii 65 (169)
+++.+.+|||||+|++..+-.+.+. .-..-+..+...+.+.||||..+-. ......+.++|+++
T Consensus 11 IiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlil 90 (298)
T COG1159 11 IIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLIL 90 (298)
T ss_pred EEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEE
Confidence 5689999999999987433333333 2223345578999999999954321 22334578999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCCCCCceeEEEEeeeccCCCHHH
Q 030931 66 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 144 (169)
Q Consensus 66 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 144 (169)
||+|+++...- -.+++-+.++. .+.|+++++||+|...... .....+.+... .....++++||++|.|++.
T Consensus 91 fvvd~~~~~~~--~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~---~~f~~ivpiSA~~g~n~~~ 162 (298)
T COG1159 91 FVVDADEGWGP--GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKL---LPFKEIVPISALKGDNVDT 162 (298)
T ss_pred EEEeccccCCc--cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhh---CCcceEEEeeccccCCHHH
Confidence 99999763222 23334344332 3679999999999865544 22333333221 1122699999999999999
Q ss_pred HHHHHHHHHHhhh
Q 030931 145 GLDWLASTLKEMR 157 (169)
Q Consensus 145 ~~~~l~~~~~~~~ 157 (169)
+.+.+...+.+..
T Consensus 163 L~~~i~~~Lpeg~ 175 (298)
T COG1159 163 LLEIIKEYLPEGP 175 (298)
T ss_pred HHHHHHHhCCCCC
Confidence 9999998887754
No 212
>PRK13351 elongation factor G; Reviewed
Probab=99.70 E-value=1.5e-16 Score=129.30 Aligned_cols=103 Identities=14% Similarity=0.106 Sum_probs=81.5
Q ss_pred ccccCCCCCceeeeecee-------------------------eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHh
Q 030931 2 LRVKQPYCTSCTLVKFYL-------------------------LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRH 56 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~-------------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 56 (169)
+++..++|||||++++.. .+.+|+......+.++++++++|||||+..|...+..
T Consensus 13 iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df~~~~~~ 92 (687)
T PRK13351 13 ILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDFTGEVER 92 (687)
T ss_pred EECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHHHHHHHH
Confidence 567899999999998721 2345666667778889999999999999999999999
Q ss_pred hccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030931 57 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA 109 (169)
Q Consensus 57 ~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~ 109 (169)
+++.+|++++|+|.++.........| ..+.. .++|+++++||+|+...
T Consensus 93 ~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~----~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 93 SLRVLDGAVVVFDAVTGVQPQTETVW-RQADR----YGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh----cCCCEEEEEECCCCCCC
Confidence 99999999999999887665544333 22211 36899999999998754
No 213
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.69 E-value=3.8e-17 Score=115.81 Aligned_cols=115 Identities=20% Similarity=0.228 Sum_probs=74.5
Q ss_pred EEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhh---H---HHHHHHHHHHhcCCCCCCCeEEEE
Q 030931 27 FNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRER---I---GKAKQEFQAIIKDPFMLNSVILVF 100 (169)
Q Consensus 27 ~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~piivv 100 (169)
.....+.++++++.+|||||+..|...+...++.+|++++|+|+++... | ......+. .... ....|++++
T Consensus 67 ~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~iiiv 143 (219)
T cd01883 67 VGLAKFETEKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHAL-LART--LGVKQLIVA 143 (219)
T ss_pred cceEEEeeCCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHH-HHHH--cCCCeEEEE
Confidence 3345577789999999999998887777777888999999999987411 1 11111111 1111 124689999
Q ss_pred EeCCCCCCCC-C---HhHHHhh----hCCCCCCCceeEEEEeeeccCCCHHH
Q 030931 101 ANKQDMKGAM-T---PMEVCEG----LGLFDLKNRKWHIQGTCALKGDGLYE 144 (169)
Q Consensus 101 ~nK~Dl~~~~-~---~~~~~~~----~~~~~~~~~~~~~~~~Sa~~~~gi~~ 144 (169)
+||+|+..+. + ..++.+. +.........++++++||++|+|+.+
T Consensus 144 vNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~~ 195 (219)
T cd01883 144 VNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIE 195 (219)
T ss_pred EEccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCCc
Confidence 9999997321 1 1222222 22111123357899999999999873
No 214
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.69 E-value=6.3e-17 Score=113.84 Aligned_cols=139 Identities=14% Similarity=0.023 Sum_probs=87.2
Q ss_pred ccccCCCCCceeeeece------e--e------------------------------eeeeeeEEEEEEEECCEEEEEEE
Q 030931 2 LRVKQPYCTSCTLVKFY------L--L------------------------------FLLLVRFNVEKVQYKNVIFTVWD 43 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~------~--~------------------------------~~~t~~~~~~~~~~~~~~~~i~D 43 (169)
+++..++|||||++++- . . ...|+......+..++.++.+||
T Consensus 4 iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~liD 83 (208)
T cd04166 4 TCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFIIAD 83 (208)
T ss_pred EEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEEEEE
Confidence 56789999999999761 0 0 12233344455666888999999
Q ss_pred cCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCC
Q 030931 44 VGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGL 121 (169)
Q Consensus 44 ~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~ 121 (169)
|||+++|.......++.+|++++|+|+++...-. ..... .+++.. ...++++|+||+|+.+... ..++...+..
T Consensus 84 TpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~-~~~~~-~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~ 159 (208)
T cd04166 84 TPGHEQYTRNMVTGASTADLAILLVDARKGVLEQ-TRRHS-YILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVADYLA 159 (208)
T ss_pred CCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHh-HHHHH-HHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHHHHH
Confidence 9999988776777789999999999997643211 11111 122211 1246788999999864211 1111111110
Q ss_pred --CCCCCceeEEEEeeeccCCCHHH
Q 030931 122 --FDLKNRKWHIQGTCALKGDGLYE 144 (169)
Q Consensus 122 --~~~~~~~~~~~~~Sa~~~~gi~~ 144 (169)
........+++++||++|.|+.+
T Consensus 160 ~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 160 FAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred HHHHcCCCCceEEEEeCCCCCCCcc
Confidence 00111234689999999999875
No 215
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.69 E-value=8.5e-17 Score=123.43 Aligned_cols=115 Identities=16% Similarity=0.052 Sum_probs=74.5
Q ss_pred EEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH----
Q 030931 37 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP---- 112 (169)
Q Consensus 37 ~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~---- 112 (169)
..+++|||||++.|..........+|++++|+|+++..........+..+ ... ...|+++|+||+|+.+....
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l-~~~--~i~~iiVVlNK~Dl~~~~~~~~~~ 161 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMAL-DII--GIKNIVIVQNKIDLVSKERALENY 161 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHH-HHc--CCCcEEEEEEeeccccchhHHHHH
Confidence 68999999999887765555566789999999998542111111111111 111 23478999999998653221
Q ss_pred hHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhh
Q 030931 113 MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM 156 (169)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (169)
+++...+... ....++++++||++|+|++++++++...+...
T Consensus 162 ~~i~~~l~~~--~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~~ 203 (411)
T PRK04000 162 EQIKEFVKGT--VAENAPIIPVSALHKVNIDALIEAIEEEIPTP 203 (411)
T ss_pred HHHHHHhccc--cCCCCeEEEEECCCCcCHHHHHHHHHHhCCCC
Confidence 1122211100 12246799999999999999999999876543
No 216
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=3.3e-16 Score=119.86 Aligned_cols=149 Identities=15% Similarity=0.092 Sum_probs=106.8
Q ss_pred CCCceeeeec----------------------eeeeeeeeeEEEEEEEEC---CEEEEEEEcCCCCCchhhHHhhccCCC
Q 030931 8 YCTSCTLVKF----------------------YLLFLLLVRFNVEKVQYK---NVIFTVWDVGGQEKLRPLWRHYFNNTD 62 (169)
Q Consensus 8 ~~Ktsll~~f----------------------~~~~~~t~~~~~~~~~~~---~~~~~i~D~~G~~~~~~~~~~~~~~~~ 62 (169)
=|||||..|+ ..+..-|+......+-+. .+.++++|||||-.|......-+..|+
T Consensus 71 HGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~EVsRslaac~ 150 (650)
T KOG0462|consen 71 HGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSGEVSRSLAACD 150 (650)
T ss_pred CCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccceehehhhhcC
Confidence 4899998864 123344555444444444 499999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCH
Q 030931 63 GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGL 142 (169)
Q Consensus 63 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 142 (169)
++++|+|++....-..+..++..+ + .+.-+|.|+||+|++.+.. +.+...+... ......+.+.+||++|.|+
T Consensus 151 G~lLvVDA~qGvqAQT~anf~lAf-e----~~L~iIpVlNKIDlp~adp-e~V~~q~~~l-F~~~~~~~i~vSAK~G~~v 223 (650)
T KOG0462|consen 151 GALLVVDASQGVQAQTVANFYLAF-E----AGLAIIPVLNKIDLPSADP-ERVENQLFEL-FDIPPAEVIYVSAKTGLNV 223 (650)
T ss_pred ceEEEEEcCcCchHHHHHHHHHHH-H----cCCeEEEeeeccCCCCCCH-HHHHHHHHHH-hcCCccceEEEEeccCccH
Confidence 999999998755444444444444 2 3678999999999987643 3333322211 1222336999999999999
Q ss_pred HHHHHHHHHHHHhhhcccccc
Q 030931 143 YEGLDWLASTLKEMRAAGYSS 163 (169)
Q Consensus 143 ~~~~~~l~~~~~~~~~~~~~~ 163 (169)
+++++++++.++.++.....|
T Consensus 224 ~~lL~AII~rVPpP~~~~d~p 244 (650)
T KOG0462|consen 224 EELLEAIIRRVPPPKGIRDAP 244 (650)
T ss_pred HHHHHHHHhhCCCCCCCCCcc
Confidence 999999999998876554433
No 217
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.67 E-value=1.1e-15 Score=115.73 Aligned_cols=141 Identities=13% Similarity=0.101 Sum_probs=103.9
Q ss_pred ccccCCCCCceeeeec--------eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhH--------HhhccCCCEEE
Q 030931 2 LRVKQPYCTSCTLVKF--------YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLW--------RHYFNNTDGLI 65 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f--------~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~~~~~~~ii 65 (169)
|.++|.+|||||+|.+ ++-+.+|-.+-...++.+++.+.+.||+|...-.... ...++.||.++
T Consensus 222 IiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL 301 (454)
T COG0486 222 IIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVL 301 (454)
T ss_pred EECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEE
Confidence 5679999999999976 5666777777788899999999999999976543332 34578999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHH
Q 030931 66 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG 145 (169)
Q Consensus 66 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 145 (169)
+|+|.+.+.+-.+.. .+. . ...+.|+++|.||.|+........+ . . ..+.+++.+||++|+|++.+
T Consensus 302 ~v~D~~~~~~~~d~~-~~~-~----~~~~~~~i~v~NK~DL~~~~~~~~~-~-~------~~~~~~i~iSa~t~~Gl~~L 367 (454)
T COG0486 302 FVLDASQPLDKEDLA-LIE-L----LPKKKPIIVVLNKADLVSKIELESE-K-L------ANGDAIISISAKTGEGLDAL 367 (454)
T ss_pred EEEeCCCCCchhhHH-HHH-h----cccCCCEEEEEechhcccccccchh-h-c------cCCCceEEEEecCccCHHHH
Confidence 999998852222211 111 1 2247899999999999865443322 1 0 11225899999999999999
Q ss_pred HHHHHHHHHhh
Q 030931 146 LDWLASTLKEM 156 (169)
Q Consensus 146 ~~~l~~~~~~~ 156 (169)
.+.+...+...
T Consensus 368 ~~~i~~~~~~~ 378 (454)
T COG0486 368 REAIKQLFGKG 378 (454)
T ss_pred HHHHHHHHhhc
Confidence 99998877766
No 218
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.66 E-value=6.8e-16 Score=112.54 Aligned_cols=102 Identities=15% Similarity=0.131 Sum_probs=75.2
Q ss_pred ccccCCCCCceeeeecee-------------------------eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHh
Q 030931 2 LRVKQPYCTSCTLVKFYL-------------------------LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRH 56 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~-------------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 56 (169)
|++..|+|||||++++-. ....|+......+.++++.+++|||||+..+...+..
T Consensus 4 ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~ 83 (268)
T cd04170 4 LVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGETRA 83 (268)
T ss_pred EECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHHHHH
Confidence 678999999999997511 0123333445567778999999999999888888888
Q ss_pred hccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030931 57 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG 108 (169)
Q Consensus 57 ~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 108 (169)
+++.+|++++|+|+++........ .+..+ . ..++|.++++||+|+..
T Consensus 84 ~l~~aD~~i~Vvd~~~g~~~~~~~-~~~~~-~---~~~~p~iivvNK~D~~~ 130 (268)
T cd04170 84 ALRAADAALVVVSAQSGVEVGTEK-LWEFA-D---EAGIPRIIFINKMDRER 130 (268)
T ss_pred HHHHCCEEEEEEeCCCCCCHHHHH-HHHHH-H---HcCCCEEEEEECCccCC
Confidence 999999999999998754443222 22222 1 13689999999999763
No 219
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.66 E-value=1e-15 Score=115.69 Aligned_cols=146 Identities=14% Similarity=0.140 Sum_probs=110.0
Q ss_pred CCCceeeeec----------------------eeeeeeeeeEEEEEEEE-----CCEEEEEEEcCCCCCchhhHHhhccC
Q 030931 8 YCTSCTLVKF----------------------YLLFLLLVRFNVEKVQY-----KNVIFTVWDVGGQEKLRPLWRHYFNN 60 (169)
Q Consensus 8 ~~Ktsll~~f----------------------~~~~~~t~~~~~~~~~~-----~~~~~~i~D~~G~~~~~~~~~~~~~~ 60 (169)
-|||||..|+ ..+..-|+..+..++.+ ..+.+++.|||||-.|......-+..
T Consensus 20 HGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFsYEVSRSLAA 99 (603)
T COG0481 20 HGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYEVSRSLAA 99 (603)
T ss_pred CCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceEEEehhhHhh
Confidence 4899998864 23445566655555555 45999999999999999988888999
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCCCCCceeEEEEeeec
Q 030931 61 TDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT---PMEVCEGLGLFDLKNRKWHIQGTCAL 137 (169)
Q Consensus 61 ~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~ 137 (169)
|.++++|+|++..-.-..+...+..+ + .+..++-|+||+||+.+.. ..++.+.+++... ..+.+|||
T Consensus 100 CEGalLvVDAsQGveAQTlAN~YlAl--e---~~LeIiPViNKIDLP~Adpervk~eIe~~iGid~~-----dav~~SAK 169 (603)
T COG0481 100 CEGALLVVDASQGVEAQTLANVYLAL--E---NNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDAS-----DAVLVSAK 169 (603)
T ss_pred CCCcEEEEECccchHHHHHHHHHHHH--H---cCcEEEEeeecccCCCCCHHHHHHHHHHHhCCCcc-----hheeEecc
Confidence 99999999998754444444444444 1 3788999999999987643 3566666665532 37999999
Q ss_pred cCCCHHHHHHHHHHHHHhhhcccccc
Q 030931 138 KGDGLYEGLDWLASTLKEMRAAGYSS 163 (169)
Q Consensus 138 ~~~gi~~~~~~l~~~~~~~~~~~~~~ 163 (169)
+|.||+++++.+++.++.++.....|
T Consensus 170 tG~gI~~iLe~Iv~~iP~P~g~~~~p 195 (603)
T COG0481 170 TGIGIEDVLEAIVEKIPPPKGDPDAP 195 (603)
T ss_pred cCCCHHHHHHHHHhhCCCCCCCCCCc
Confidence 99999999999999998877544433
No 220
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.65 E-value=9.1e-16 Score=120.64 Aligned_cols=103 Identities=16% Similarity=0.184 Sum_probs=74.2
Q ss_pred ccccCCCCCceeeeece--ee--------------e-------------eeeeeEEEEEEEECCEEEEEEEcCCCCCchh
Q 030931 2 LRVKQPYCTSCTLVKFY--LL--------------F-------------LLLVRFNVEKVQYKNVIFTVWDVGGQEKLRP 52 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~--~~--------------~-------------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 52 (169)
|++-.++|||||++++- .. . ..|+......+.++++++++|||||+..|..
T Consensus 15 IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~~df~~ 94 (526)
T PRK00741 15 IISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGHEDFSE 94 (526)
T ss_pred EECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCchhhHH
Confidence 45678999999999761 00 0 1112233455778899999999999999988
Q ss_pred hHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030931 53 LWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA 109 (169)
Q Consensus 53 ~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~ 109 (169)
....+++.+|++|+|+|+++.... ....++... ...++|+++++||+|+...
T Consensus 95 ~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~----~~~~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 95 DTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVC----RLRDTPIFTFINKLDRDGR 146 (526)
T ss_pred HHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHH----HhcCCCEEEEEECCccccc
Confidence 888889999999999999764322 223333333 1247899999999998653
No 221
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.64 E-value=1.9e-15 Score=105.13 Aligned_cols=137 Identities=18% Similarity=0.076 Sum_probs=88.1
Q ss_pred ccccCCCCCceeeeecee-----------------------eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhc
Q 030931 2 LRVKQPYCTSCTLVKFYL-----------------------LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYF 58 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~-----------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 58 (169)
+++..++|||||++++.. ....|+......+..++..+.+.||||+..|.......+
T Consensus 7 iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~ 86 (195)
T cd01884 7 TIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKNMITGA 86 (195)
T ss_pred EECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHHHHHHh
Confidence 456889999999997621 122233333444556788999999999988877777788
Q ss_pred cCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCCH-----hHHHhhhCCCCCCCceeEEE
Q 030931 59 NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKGAMTP-----MEVCEGLGLFDLKNRKWHIQ 132 (169)
Q Consensus 59 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 132 (169)
..+|++++|+|+..... ......+..+.. .++| +++++||+|+...... .++...+.........++++
T Consensus 87 ~~~D~~ilVvda~~g~~-~~~~~~~~~~~~----~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~ii 161 (195)
T cd01884 87 AQMDGAILVVSATDGPM-PQTREHLLLARQ----VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDNTPIV 161 (195)
T ss_pred hhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccCCeEE
Confidence 99999999999975322 122222333321 2455 7899999998532211 12223222111122357899
Q ss_pred EeeeccCCCHH
Q 030931 133 GTCALKGDGLY 143 (169)
Q Consensus 133 ~~Sa~~~~gi~ 143 (169)
++||++|.|+.
T Consensus 162 piSa~~g~n~~ 172 (195)
T cd01884 162 RGSALKALEGD 172 (195)
T ss_pred EeeCccccCCC
Confidence 99999999863
No 222
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.64 E-value=9.7e-16 Score=108.72 Aligned_cols=113 Identities=19% Similarity=0.151 Sum_probs=73.6
Q ss_pred ECCEEEEEEEcCCCCCchhhHHhhcc--CCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC
Q 030931 34 YKNVIFTVWDVGGQEKLRPLWRHYFN--NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT 111 (169)
Q Consensus 34 ~~~~~~~i~D~~G~~~~~~~~~~~~~--~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~ 111 (169)
..+..+.+.||||+++|.......+. .+|++++|+|+..... .....++..+.. .++|+++|.||+|+.+...
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~----~~ip~ivvvNK~D~~~~~~ 155 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALA----LNIPVFVVVTKIDLAPANI 155 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEECccccCHHH
Confidence 35678999999999988765554454 6899999999865432 222233333321 3689999999999864322
Q ss_pred H----hHHHhhhCCCC---------------------CCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931 112 P----MEVCEGLGLFD---------------------LKNRKWHIQGTCALKGDGLYEGLDWLAS 151 (169)
Q Consensus 112 ~----~~~~~~~~~~~---------------------~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (169)
. .++.+.+.... ......++|.+||.+|+|++++...|..
T Consensus 156 ~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 156 LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 2 22333332110 0122348999999999999998876643
No 223
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.64 E-value=3.6e-15 Score=108.50 Aligned_cols=102 Identities=14% Similarity=0.120 Sum_probs=75.1
Q ss_pred ccccCCCCCceeeeece---e----------------------eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHh
Q 030931 2 LRVKQPYCTSCTLVKFY---L----------------------LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRH 56 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~---~----------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 56 (169)
+++..++|||||++++- . ....|+......+.++++++.+|||||+..|...+..
T Consensus 4 ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~~~~ 83 (270)
T cd01886 4 IIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIEVER 83 (270)
T ss_pred EEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHHHHH
Confidence 56789999999999761 1 1122333445667889999999999999999888999
Q ss_pred hccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030931 57 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG 108 (169)
Q Consensus 57 ~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 108 (169)
.++.+|++++|+|..+...-. ....+..... .++|+++++||+|+.+
T Consensus 84 ~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~~----~~~p~ivviNK~D~~~ 130 (270)
T cd01886 84 SLRVLDGAVAVFDAVAGVEPQ-TETVWRQADR----YNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHcCEEEEEEECCCCCCHH-HHHHHHHHHH----cCCCEEEEEECCCCCC
Confidence 999999999999997643222 1223333321 3689999999999863
No 224
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.63 E-value=3.1e-15 Score=112.95 Aligned_cols=149 Identities=13% Similarity=-0.002 Sum_probs=103.4
Q ss_pred ccccCCCCCceeeeec--------eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhh-----------HHhhccCCC
Q 030931 2 LRVKQPYCTSCTLVKF--------YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPL-----------WRHYFNNTD 62 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f--------~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----------~~~~~~~~~ 62 (169)
++++|..|||||+|++ .+....|...-...+++++.++.+.||+|..+-... ....+..|+
T Consensus 183 iiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~ 262 (444)
T COG1160 183 IIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERAD 262 (444)
T ss_pred EEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcC
Confidence 5789999999999987 344555555566678889999999999996542222 223567899
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCC
Q 030931 63 GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGD 140 (169)
Q Consensus 63 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 140 (169)
.+++|+|.+..-+-.+.+ ....+.+ .+.++++|.||+|+.+. ...++....+......-...+.+++||++|.
T Consensus 263 vvllviDa~~~~~~qD~~-ia~~i~~----~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~ 337 (444)
T COG1160 263 VVLLVIDATEGISEQDLR-IAGLIEE----AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQ 337 (444)
T ss_pred EEEEEEECCCCchHHHHH-HHHHHHH----cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCC
Confidence 999999998754433322 2222222 37899999999998764 3333443333322223345679999999999
Q ss_pred CHHHHHHHHHHHHHh
Q 030931 141 GLYEGLDWLASTLKE 155 (169)
Q Consensus 141 gi~~~~~~l~~~~~~ 155 (169)
|+.++|+++......
T Consensus 338 ~i~~l~~~i~~~~~~ 352 (444)
T COG1160 338 GLDKLFEAIKEIYEC 352 (444)
T ss_pred ChHHHHHHHHHHHHH
Confidence 999999998765444
No 225
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=2.2e-15 Score=115.46 Aligned_cols=140 Identities=21% Similarity=0.104 Sum_probs=101.6
Q ss_pred CCCCceeeeec-------eeeeeeeeeEEEEEEEE---CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh---
Q 030931 7 PYCTSCTLVKF-------YLLFLLLVRFNVEKVQY---KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR--- 73 (169)
Q Consensus 7 ~~~Ktsll~~f-------~~~~~~t~~~~~~~~~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~--- 73 (169)
.=|||||+..+ .+...-|+.+--+.+.. +.-.+.|.|||||+.|..|+..-.+-+|.+|+|+|++|.
T Consensus 15 DHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~p 94 (509)
T COG0532 15 DHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVMP 94 (509)
T ss_pred cCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCcch
Confidence 45899999966 34555666666666666 346899999999999999999999999999999999763
Q ss_pred hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCC----CCceeEEEEeeeccCCCHHHHHHHH
Q 030931 74 ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDL----KNRKWHIQGTCALKGDGLYEGLDWL 149 (169)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~~~~~l 149 (169)
++.+.+. +....+.|++++.||+|+++. .+..+...+....+ -.....++++||++|+|+.+++..+
T Consensus 95 QTiEAI~--------hak~a~vP~iVAiNKiDk~~~-np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~i 165 (509)
T COG0532 95 QTIEAIN--------HAKAAGVPIVVAINKIDKPEA-NPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELI 165 (509)
T ss_pred hHHHHHH--------HHHHCCCCEEEEEecccCCCC-CHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHH
Confidence 3444332 112248999999999999854 33333333321111 1234679999999999999999988
Q ss_pred HHHHHh
Q 030931 150 ASTLKE 155 (169)
Q Consensus 150 ~~~~~~ 155 (169)
.-...-
T Consensus 166 ll~aev 171 (509)
T COG0532 166 LLLAEV 171 (509)
T ss_pred HHHHHH
Confidence 764443
No 226
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.62 E-value=2.7e-15 Score=105.89 Aligned_cols=101 Identities=15% Similarity=0.127 Sum_probs=71.0
Q ss_pred ccccCCCCCceeeeeceeeee--------------------------eeeeEEEEEEEE-----CCEEEEEEEcCCCCCc
Q 030931 2 LRVKQPYCTSCTLVKFYLLFL--------------------------LLVRFNVEKVQY-----KNVIFTVWDVGGQEKL 50 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~--------------------------~t~~~~~~~~~~-----~~~~~~i~D~~G~~~~ 50 (169)
+++..++|||||++++..... .|+......+.+ ..+.+++|||||+..|
T Consensus 5 iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~~~f 84 (213)
T cd04167 5 IAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGHVNF 84 (213)
T ss_pred EEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCCcch
Confidence 567899999999997621110 011111122222 3588999999999999
Q ss_pred hhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030931 51 RPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 107 (169)
Q Consensus 51 ~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 107 (169)
......+++.+|++++|+|+++..+... ..++..... .+.|+++++||+|+.
T Consensus 85 ~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~ 136 (213)
T cd04167 85 MDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRL 136 (213)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccC
Confidence 8888899999999999999987655532 334443322 358999999999975
No 227
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.62 E-value=3.5e-16 Score=120.46 Aligned_cols=155 Identities=12% Similarity=-0.003 Sum_probs=110.3
Q ss_pred ccccCCCCCceeeeec-eeeeeeeee----EEEEEEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChh
Q 030931 2 LRVKQPYCTSCTLVKF-YLLFLLLVR----FNVEKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE 74 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-~~~~~~t~~----~~~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 74 (169)
|.+..|+|||||+..+ .++..+.+. ......+. ..+...|.|++....-+.....-+++|+++.+||+++++.
T Consensus 14 liGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~ 93 (625)
T KOG1707|consen 14 LIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDES 93 (625)
T ss_pred EECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEEEEecCChH
Confidence 5679999999999975 233333333 22222333 4666999999876665666677789999999999999999
Q ss_pred hHHHHH-HHHHHHhcC-CCCCCCeEEEEEeCCCCCCCCCH--hH-HHhhhCCCCCCCcee-EEEEeeeccCCCHHHHHHH
Q 030931 75 RIGKAK-QEFQAIIKD-PFMLNSVILVFANKQDMKGAMTP--ME-VCEGLGLFDLKNRKW-HIQGTCALKGDGLYEGLDW 148 (169)
Q Consensus 75 ~~~~~~-~~~~~~~~~-~~~~~~piivv~nK~Dl~~~~~~--~~-~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~~ 148 (169)
+++.+. .|+..+.+. .....+|+|+||||+|....... +. +...+.. ...+ ..++|||++..++.++|..
T Consensus 94 T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~----f~EiEtciecSA~~~~n~~e~fYy 169 (625)
T KOG1707|consen 94 TVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIA----FAEIETCIECSALTLANVSELFYY 169 (625)
T ss_pred HhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHH----hHHHHHHHhhhhhhhhhhHhhhhh
Confidence 999986 688777552 23457999999999998764332 22 2222211 1111 2799999999999999999
Q ss_pred HHHHHHhhhccc
Q 030931 149 LASTLKEMRAAG 160 (169)
Q Consensus 149 l~~~~~~~~~~~ 160 (169)
.-+++..+..+-
T Consensus 170 aqKaVihPt~PL 181 (625)
T KOG1707|consen 170 AQKAVIHPTSPL 181 (625)
T ss_pred hhheeeccCccc
Confidence 998888776544
No 228
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.62 E-value=7.3e-15 Score=103.93 Aligned_cols=67 Identities=16% Similarity=0.200 Sum_probs=54.1
Q ss_pred CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030931 36 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 107 (169)
Q Consensus 36 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 107 (169)
++.+++|||||+..|......+++.+|++++|+|+++...... ...+..... .++|+++++||+|+.
T Consensus 72 ~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~----~~~p~ilviNKiD~~ 138 (222)
T cd01885 72 EYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK----ERVKPVLVINKIDRL 138 (222)
T ss_pred ceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCcc
Confidence 7899999999999999999999999999999999987655443 233333322 357999999999975
No 229
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.61 E-value=4e-16 Score=106.17 Aligned_cols=118 Identities=23% Similarity=0.250 Sum_probs=73.6
Q ss_pred ccccCCCCCceeeeece-eeeeeeee--EEEEEEEE---CCEEEEEEEcCCCCCchhhHHh---hccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVKFY-LLFLLLVR--FNVEKVQY---KNVIFTVWDVGGQEKLRPLWRH---YFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~-~~~~~t~~--~~~~~~~~---~~~~~~i~D~~G~~~~~~~~~~---~~~~~~~ii~v~d~~~ 72 (169)
|.+-.|||||+|+.++. ....+|.. .+...+.. .+..+.++|+|||.+.+..... +...+.+||||+|.+.
T Consensus 8 L~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~ 87 (181)
T PF09439_consen 8 LVGPSGSGKTALFSQLVNGKTVPTVTSMENNIAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSST 87 (181)
T ss_dssp EE-STTSSHHHHHHHHHHSS---B---SSEEEECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTT
T ss_pred EEcCCCCCHHHHHHHHhcCCcCCeeccccCCceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCcc
Confidence 55678999999999873 22222222 12222222 4567999999999998875544 4789999999999974
Q ss_pred -hhhHHHHHHHHHHHhcC--CCCCCCeEEEEEeCCCCCCCCCHhHHHhhh
Q 030931 73 -RERIGKAKQEFQAIIKD--PFMLNSVILVFANKQDMKGAMTPMEVCEGL 119 (169)
Q Consensus 73 -~~~~~~~~~~~~~~~~~--~~~~~~piivv~nK~Dl~~~~~~~~~~~~~ 119 (169)
...+.++.+++-+++.. .....+|+++++||.|+..+.+...+...+
T Consensus 88 ~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~~L 137 (181)
T PF09439_consen 88 DQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKKLL 137 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHHHH
Confidence 44566666666665552 234579999999999998876655444433
No 230
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.61 E-value=1.3e-15 Score=99.51 Aligned_cols=132 Identities=14% Similarity=0.112 Sum_probs=83.9
Q ss_pred CccccCCCCCceeeeeceeeeeeeeeEEEEEEEECCEEEEEEEcCCCCC----chhhHHhhccCCCEEEEEEECCChhh-
Q 030931 1 MLRVKQPYCTSCTLVKFYLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEK----LRPLWRHYFNNTDGLIYVVDSLDRER- 75 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~~~~~~~ii~v~d~~~~~~- 75 (169)
||.+..|+|||||++++......... ...+.+.+ .+.||||..- +....-..-.+||.++++.|.+++.+
T Consensus 5 mliG~~g~GKTTL~q~L~~~~~~~~K--Tq~i~~~~---~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~ 79 (143)
T PF10662_consen 5 MLIGPSGSGKTTLAQALNGEEIRYKK--TQAIEYYD---NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSV 79 (143)
T ss_pred EEECCCCCCHHHHHHHHcCCCCCcCc--cceeEecc---cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCcc
Confidence 68889999999999988553322111 12233333 3589999642 22222223458999999999987643
Q ss_pred HHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC-CCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931 76 IGKAKQEFQAIIKDPFMLNSVILVFANKQDMK-GAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 150 (169)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 150 (169)
|.. .+.+. -..|++-|+||+|+. +..+.+...+.+..... . ++|++|+.+|+|++++.++|-
T Consensus 80 ~pP------~fa~~---f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~--~--~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 80 FPP------GFASM---FNKPVIGVITKIDLPSDDANIERAKKWLKNAGV--K--EIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred CCc------hhhcc---cCCCEEEEEECccCccchhhHHHHHHHHHHcCC--C--CeEEEECCCCcCHHHHHHHHh
Confidence 221 12111 157999999999997 22233333334432211 1 379999999999999998873
No 231
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.60 E-value=2.2e-14 Score=107.63 Aligned_cols=138 Identities=20% Similarity=0.301 Sum_probs=108.3
Q ss_pred eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC----------hhhHHHHHHHHHHHhcC
Q 030931 20 LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD----------RERIGKAKQEFQAIIKD 89 (169)
Q Consensus 20 ~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~~~~~~~~~~~~~~~~ 89 (169)
...||.|++...+..++..+.+||++|+...+..|..++.+++++|||+|+++ ..++.+....++.++..
T Consensus 167 ~r~~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~ 246 (342)
T smart00275 167 SRVPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNS 246 (342)
T ss_pred eeCCccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcC
Confidence 34678888889999999999999999999999999999999999999999986 35688888889999988
Q ss_pred CCCCCCeEEEEEeCCCCCCC-----------------CCHhHHHh----hhCCCCC--CCceeEEEEeeeccCCCHHHHH
Q 030931 90 PFMLNSVILVFANKQDMKGA-----------------MTPMEVCE----GLGLFDL--KNRKWHIQGTCALKGDGLYEGL 146 (169)
Q Consensus 90 ~~~~~~piivv~nK~Dl~~~-----------------~~~~~~~~----~~~~~~~--~~~~~~~~~~Sa~~~~gi~~~~ 146 (169)
....+.|+++++||.|+... .+.++..+ .+..... ..+.+....++|.+..++..+|
T Consensus 247 ~~~~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~ 326 (342)
T smart00275 247 RWFANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVF 326 (342)
T ss_pred ccccCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHH
Confidence 77889999999999997421 01111111 1111000 2245677889999999999999
Q ss_pred HHHHHHHHhhh
Q 030931 147 DWLASTLKEMR 157 (169)
Q Consensus 147 ~~l~~~~~~~~ 157 (169)
+.+...+.+..
T Consensus 327 ~~v~~~I~~~~ 337 (342)
T smart00275 327 DAVKDIILQRN 337 (342)
T ss_pred HHHHHHHHHHH
Confidence 99988887754
No 232
>PRK12736 elongation factor Tu; Reviewed
Probab=99.60 E-value=7.1e-15 Score=112.47 Aligned_cols=148 Identities=16% Similarity=0.091 Sum_probs=93.4
Q ss_pred ccccCCCCCceeeeecee-----------------------eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhc
Q 030931 2 LRVKQPYCTSCTLVKFYL-----------------------LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYF 58 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~-----------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 58 (169)
+.+..++|||||+.++.. ...-|+......+..++..+.++|||||++|........
T Consensus 17 i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~~~ 96 (394)
T PRK12736 17 TIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGA 96 (394)
T ss_pred EEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHHHHHHHHH
Confidence 356788999999997621 222333333344555778899999999998877666667
Q ss_pred cCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCCHh-----HHHhhhCCCCCCCceeEEE
Q 030931 59 NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKGAMTPM-----EVCEGLGLFDLKNRKWHIQ 132 (169)
Q Consensus 59 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 132 (169)
..+|++++|+|+.+... ......+..+.. .++| +++++||+|+.+..... ++...+..........+++
T Consensus 97 ~~~d~~llVvd~~~g~~-~~t~~~~~~~~~----~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii 171 (394)
T PRK12736 97 AQMDGAILVVAATDGPM-PQTREHILLARQ----VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPGDDIPVI 171 (394)
T ss_pred hhCCEEEEEEECCCCCc-hhHHHHHHHHHH----cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCcCCccEE
Confidence 88999999999975321 122233333321 2567 67899999986422211 2222221111122246899
Q ss_pred EeeeccCC--------CHHHHHHHHHHHHH
Q 030931 133 GTCALKGD--------GLYEGLDWLASTLK 154 (169)
Q Consensus 133 ~~Sa~~~~--------gi~~~~~~l~~~~~ 154 (169)
++||++|. ++.++++.+...+.
T Consensus 172 ~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 172 RGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred EeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 99999983 56777777776654
No 233
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.60 E-value=1.3e-14 Score=105.54 Aligned_cols=114 Identities=18% Similarity=0.233 Sum_probs=79.9
Q ss_pred ccccCCCCCceeeeece------ee-----------------------eeeeeeEEEEEEEECCEEEEEEEcCCCCCchh
Q 030931 2 LRVKQPYCTSCTLVKFY------LL-----------------------FLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRP 52 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~------~~-----------------------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 52 (169)
|++-.++|||||++++. .. ...++......++++++++++|||||+.+|..
T Consensus 7 ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~df~~ 86 (267)
T cd04169 7 IISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHEDFSE 86 (267)
T ss_pred EEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchHHHH
Confidence 56789999999999751 00 01122234456788999999999999999888
Q ss_pred hHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhC
Q 030931 53 LWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT---PMEVCEGLG 120 (169)
Q Consensus 53 ~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---~~~~~~~~~ 120 (169)
.....++.+|++|+|+|+++.... ....++... + ..++|+++++||+|+..... .+++.+.++
T Consensus 87 ~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~-~---~~~~P~iivvNK~D~~~a~~~~~~~~l~~~l~ 152 (267)
T cd04169 87 DTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVC-R---LRGIPIITFINKLDREGRDPLELLDEIEEELG 152 (267)
T ss_pred HHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHH-H---hcCCCEEEEEECCccCCCCHHHHHHHHHHHHC
Confidence 788889999999999999764322 222333332 2 13689999999999876533 245555554
No 234
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.59 E-value=1.9e-14 Score=107.12 Aligned_cols=138 Identities=22% Similarity=0.308 Sum_probs=108.2
Q ss_pred eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh----------hhHHHHHHHHHHHhcC
Q 030931 20 LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR----------ERIGKAKQEFQAIIKD 89 (169)
Q Consensus 20 ~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~----------~~~~~~~~~~~~~~~~ 89 (169)
...||.|+....+.++++.+.+||++|+...+..|..++.+++++|||+|+++- +++.+....++.++..
T Consensus 144 ~r~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~ 223 (317)
T cd00066 144 ARVKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNS 223 (317)
T ss_pred eecccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhC
Confidence 346788888889999999999999999999999999999999999999999873 5788888889999888
Q ss_pred CCCCCCeEEEEEeCCCCCCC------------------CCHhHHHhhhC----C-CCCCCceeEEEEeeeccCCCHHHHH
Q 030931 90 PFMLNSVILVFANKQDMKGA------------------MTPMEVCEGLG----L-FDLKNRKWHIQGTCALKGDGLYEGL 146 (169)
Q Consensus 90 ~~~~~~piivv~nK~Dl~~~------------------~~~~~~~~~~~----~-~~~~~~~~~~~~~Sa~~~~gi~~~~ 146 (169)
....+.|+++++||.|+... .+.++..+.+. . .....+.+....++|.+..++..+|
T Consensus 224 ~~~~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf 303 (317)
T cd00066 224 RWFANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVF 303 (317)
T ss_pred ccccCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHH
Confidence 77789999999999996321 11111111111 0 0002355667889999999999999
Q ss_pred HHHHHHHHhhh
Q 030931 147 DWLASTLKEMR 157 (169)
Q Consensus 147 ~~l~~~~~~~~ 157 (169)
+.+.+.+....
T Consensus 304 ~~v~~~i~~~~ 314 (317)
T cd00066 304 DAVKDIILQNN 314 (317)
T ss_pred HHHHHHHHHHH
Confidence 99998887654
No 235
>PRK12740 elongation factor G; Reviewed
Probab=99.59 E-value=1.9e-14 Score=116.85 Aligned_cols=100 Identities=13% Similarity=0.070 Sum_probs=76.8
Q ss_pred ccCCCCCceeeeec---ee----------------------eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhc
Q 030931 4 VKQPYCTSCTLVKF---YL----------------------LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYF 58 (169)
Q Consensus 4 ~~~~~~Ktsll~~f---~~----------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 58 (169)
+..++|||||++++ .. +...|++.....+.++++.+.+|||||+..+...+..++
T Consensus 2 g~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l 81 (668)
T PRK12740 2 GHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERAL 81 (668)
T ss_pred CCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHHH
Confidence 46789999999976 10 234456666677888999999999999998888888899
Q ss_pred cCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030931 59 NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG 108 (169)
Q Consensus 59 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 108 (169)
+.+|++++|+|+++........ .+..+.. .++|+++|+||+|+..
T Consensus 82 ~~aD~vllvvd~~~~~~~~~~~-~~~~~~~----~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 82 RVLDGAVVVVCAVGGVEPQTET-VWRQAEK----YGVPRIIFVNKMDRAG 126 (668)
T ss_pred HHhCeEEEEEeCCCCcCHHHHH-HHHHHHH----cCCCEEEEEECCCCCC
Confidence 9999999999998765544332 2233321 3689999999999864
No 236
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.59 E-value=1.5e-14 Score=113.88 Aligned_cols=141 Identities=18% Similarity=0.135 Sum_probs=107.6
Q ss_pred ccccCCCCCceeeeec-------eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhh------HHhhc--cCCCEEEE
Q 030931 2 LRVKQPYCTSCTLVKF-------YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPL------WRHYF--NNTDGLIY 66 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-------~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~~~ii~ 66 (169)
|.++|.+|||||+|++ -+.+.-|++-....+.+++..+++.|.||.+..... ..+++ ..+|++|.
T Consensus 8 lvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivn 87 (653)
T COG0370 8 LVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVN 87 (653)
T ss_pred EecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEE
Confidence 5679999999999976 355667777777888889999999999997765432 23343 36799999
Q ss_pred EEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC----CCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCH
Q 030931 67 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG----AMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGL 142 (169)
Q Consensus 67 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 142 (169)
|+|+++.++--...-.+.++ +.|++++.|++|..+ ..+.+.+++.++ +|.+++||++|+|+
T Consensus 88 VvDAtnLeRnLyltlQLlE~-------g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LG--------vPVv~tvA~~g~G~ 152 (653)
T COG0370 88 VVDATNLERNLYLTLQLLEL-------GIPMILALNMIDEAKKRGIRIDIEKLSKLLG--------VPVVPTVAKRGEGL 152 (653)
T ss_pred EcccchHHHHHHHHHHHHHc-------CCCeEEEeccHhhHHhcCCcccHHHHHHHhC--------CCEEEEEeecCCCH
Confidence 99999976554443333333 789999999999754 345666776665 46999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 030931 143 YEGLDWLASTLKEMR 157 (169)
Q Consensus 143 ~~~~~~l~~~~~~~~ 157 (169)
+++.+.+.+...++.
T Consensus 153 ~~l~~~i~~~~~~~~ 167 (653)
T COG0370 153 EELKRAIIELAESKT 167 (653)
T ss_pred HHHHHHHHHhccccc
Confidence 999999987665554
No 237
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.58 E-value=2.7e-14 Score=116.21 Aligned_cols=102 Identities=14% Similarity=0.130 Sum_probs=76.5
Q ss_pred ccccCCCCCceeeeece---e----------------------eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHh
Q 030931 2 LRVKQPYCTSCTLVKFY---L----------------------LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRH 56 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~---~----------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 56 (169)
+++..++|||||++++- . ....|+......+.++++++.+|||||+.++...+..
T Consensus 15 iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~ 94 (689)
T TIGR00484 15 ISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFTVEVER 94 (689)
T ss_pred EECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchhHHHHH
Confidence 46688999999999761 0 1223344556677889999999999999999888889
Q ss_pred hccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030931 57 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG 108 (169)
Q Consensus 57 ~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 108 (169)
.++.+|++++|+|+.+........ ++..+.+ .++|+++++||+|+..
T Consensus 95 ~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~~----~~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 95 SLRVLDGAVAVLDAVGGVQPQSET-VWRQANR----YEVPRIAFVNKMDKTG 141 (689)
T ss_pred HHHHhCEEEEEEeCCCCCChhHHH-HHHHHHH----cCCCEEEEEECCCCCC
Confidence 999999999999998754443322 2222221 3689999999999874
No 238
>PRK12735 elongation factor Tu; Reviewed
Probab=99.58 E-value=1.3e-14 Score=111.12 Aligned_cols=148 Identities=18% Similarity=0.088 Sum_probs=92.7
Q ss_pred ccccCCCCCceeeeecee-----------------------eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhc
Q 030931 2 LRVKQPYCTSCTLVKFYL-----------------------LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYF 58 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~-----------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 58 (169)
+.+..++|||||++++.. ...-|+......+..++..+.++||||++.|.......+
T Consensus 17 iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~~~ 96 (396)
T PRK12735 17 TIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYVKNMITGA 96 (396)
T ss_pred EECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHHHHHHhhh
Confidence 456789999999997631 122233333344555778899999999988876666777
Q ss_pred cCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEE-EEEeCCCCCCCCCH-h----HHHhhhCCCCCCCceeEEE
Q 030931 59 NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVIL-VFANKQDMKGAMTP-M----EVCEGLGLFDLKNRKWHIQ 132 (169)
Q Consensus 59 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii-vv~nK~Dl~~~~~~-~----~~~~~~~~~~~~~~~~~~~ 132 (169)
..+|++++|+|+.+... ......+..+.. .++|.+ +++||+|+.+.... + ++...+.........++++
T Consensus 97 ~~aD~~llVvda~~g~~-~qt~e~l~~~~~----~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~~~~~ii 171 (396)
T PRK12735 97 AQMDGAILVVSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPII 171 (396)
T ss_pred ccCCEEEEEEECCCCCc-hhHHHHHHHHHH----cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCcCceeEE
Confidence 88999999999976322 222233333321 256755 68999998642111 1 2222221111111247899
Q ss_pred EeeeccCC----------CHHHHHHHHHHHHH
Q 030931 133 GTCALKGD----------GLYEGLDWLASTLK 154 (169)
Q Consensus 133 ~~Sa~~~~----------gi~~~~~~l~~~~~ 154 (169)
++||.+|. ++.++++.+...+.
T Consensus 172 ~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 172 RGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred ecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 99999984 56777777776544
No 239
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=1.4e-14 Score=111.15 Aligned_cols=139 Identities=19% Similarity=0.095 Sum_probs=100.4
Q ss_pred CCCCceeeeec-------eeeeeeeeeEEEEEEEE-CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh---hh
Q 030931 7 PYCTSCTLVKF-------YLLFLLLVRFNVEKVQY-KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR---ER 75 (169)
Q Consensus 7 ~~~Ktsll~~f-------~~~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~---~~ 75 (169)
.=|||||+..| .+...-|.++-...+.. .+..+.|.|||||..|..|+..-.+-+|.+++|+...|. ++
T Consensus 163 DHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQT 242 (683)
T KOG1145|consen 163 DHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGVMPQT 242 (683)
T ss_pred cCChhhHHHHHhhCceehhhcCCccceeceEEEecCCCCEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCCccHhH
Confidence 45999999977 34445555554444444 568899999999999999999999999999999988763 23
Q ss_pred HHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCC--C--CceeEEEEeeeccCCCHHHHHHHHHH
Q 030931 76 IGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDL--K--NRKWHIQGTCALKGDGLYEGLDWLAS 151 (169)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (169)
.+.+ ++....+.|+++++||+|.+++ +++.+.+.+....+ + -...+++++||++|+|++.+-+.+.-
T Consensus 243 ~EaI--------khAk~A~VpiVvAinKiDkp~a-~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill 313 (683)
T KOG1145|consen 243 LEAI--------KHAKSANVPIVVAINKIDKPGA-NPEKVKRELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAILL 313 (683)
T ss_pred HHHH--------HHHHhcCCCEEEEEeccCCCCC-CHHHHHHHHHHcCccHHHcCCceeEEEeecccCCChHHHHHHHHH
Confidence 3322 2223358999999999998865 44444444432222 1 13478999999999999999888775
Q ss_pred HHH
Q 030931 152 TLK 154 (169)
Q Consensus 152 ~~~ 154 (169)
+..
T Consensus 314 ~Ae 316 (683)
T KOG1145|consen 314 LAE 316 (683)
T ss_pred HHH
Confidence 443
No 240
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.58 E-value=1.5e-14 Score=113.91 Aligned_cols=102 Identities=15% Similarity=0.181 Sum_probs=72.6
Q ss_pred ccccCCCCCceeeeec--eeee---------------------------eeeeeEEEEEEEECCEEEEEEEcCCCCCchh
Q 030931 2 LRVKQPYCTSCTLVKF--YLLF---------------------------LLLVRFNVEKVQYKNVIFTVWDVGGQEKLRP 52 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f--~~~~---------------------------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 52 (169)
+++-.++|||||++++ .... ..|+......++++++.+++|||||+..|..
T Consensus 16 iiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG~~df~~ 95 (527)
T TIGR00503 16 IISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPGHEDFSE 95 (527)
T ss_pred EEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCChhhHHH
Confidence 4667899999999975 1100 1122233455777899999999999999888
Q ss_pred hHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030931 53 LWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG 108 (169)
Q Consensus 53 ~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 108 (169)
.....++.+|++|+|+|+++... .....++... +. .++|+++++||+|+..
T Consensus 96 ~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~-~~---~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 96 DTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVT-RL---RDTPIFTFMNKLDRDI 146 (527)
T ss_pred HHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHH-Hh---cCCCEEEEEECccccC
Confidence 77778999999999999976321 1223333322 22 4689999999999853
No 241
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.57 E-value=1.7e-14 Score=110.45 Aligned_cols=134 Identities=18% Similarity=0.074 Sum_probs=83.3
Q ss_pred ccccCCCCCceeeeecee-----------------------eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhc
Q 030931 2 LRVKQPYCTSCTLVKFYL-----------------------LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYF 58 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~-----------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 58 (169)
+++..++|||||++++.. +...|+......++.++..+.+||||||++|........
T Consensus 17 i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~~~~~~~~ 96 (394)
T TIGR00485 17 TIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYVKNMITGA 96 (394)
T ss_pred EEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHHHHHHHHH
Confidence 345778999999987621 123344444445555788899999999998876666667
Q ss_pred cCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeE-EEEEeCCCCCCCCCH-h----HHHhhhCCCCCCCceeEEE
Q 030931 59 NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVI-LVFANKQDMKGAMTP-M----EVCEGLGLFDLKNRKWHIQ 132 (169)
Q Consensus 59 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi-ivv~nK~Dl~~~~~~-~----~~~~~~~~~~~~~~~~~~~ 132 (169)
..+|++++|+|+.+... ....+.+..+.. .++|. ++++||+|+.+.... + ++...+.........++++
T Consensus 97 ~~~D~~ilVvda~~g~~-~qt~e~l~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ii 171 (394)
T TIGR00485 97 AQMDGAILVVSATDGPM-PQTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFPGDDTPII 171 (394)
T ss_pred hhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCCccCccEE
Confidence 78899999999976322 122233333321 24565 478999998643211 1 2222222111111237899
Q ss_pred EeeeccCC
Q 030931 133 GTCALKGD 140 (169)
Q Consensus 133 ~~Sa~~~~ 140 (169)
++||.+|.
T Consensus 172 ~vSa~~g~ 179 (394)
T TIGR00485 172 RGSALKAL 179 (394)
T ss_pred ECcccccc
Confidence 99999885
No 242
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.57 E-value=2.1e-14 Score=103.76 Aligned_cols=143 Identities=21% Similarity=0.186 Sum_probs=97.7
Q ss_pred ccccCCCCCceeeeece-------eeeeeeeeEEEEEEEECCEE-EEEEEcCCCCCchh-------hHHhhccCCCEEEE
Q 030931 2 LRVKQPYCTSCTLVKFY-------LLFLLLVRFNVEKVQYKNVI-FTVWDVGGQEKLRP-------LWRHYFNNTDGLIY 66 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~-------~~~~~t~~~~~~~~~~~~~~-~~i~D~~G~~~~~~-------~~~~~~~~~~~ii~ 66 (169)
|.+=|..|||||++.++ ...++|+.....++.+++.. +.+-|.||.-.-.. ..-..++.|+.++|
T Consensus 201 LVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~f 280 (366)
T KOG1489|consen 201 LVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLF 280 (366)
T ss_pred eecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhhceEEE
Confidence 34458899999999663 33445555555566665444 99999999443221 23345678999999
Q ss_pred EEECCCh---hhHHHHHHHHHHHhc-CCCCCCCeEEEEEeCCCCCCCCC-H-hHHHhhhCCCCCCCceeEEEEeeeccCC
Q 030931 67 VVDSLDR---ERIGKAKQEFQAIIK-DPFMLNSVILVFANKQDMKGAMT-P-MEVCEGLGLFDLKNRKWHIQGTCALKGD 140 (169)
Q Consensus 67 v~d~~~~---~~~~~~~~~~~~~~~-~~~~~~~piivv~nK~Dl~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 140 (169)
|+|++.. +..+.+..+..++-. +..+.+.|.++|+||+|++++.. . .++.+.+.. ..++++||+.++
T Consensus 281 VvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~-------~~V~pvsA~~~e 353 (366)
T KOG1489|consen 281 VVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQN-------PHVVPVSAKSGE 353 (366)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcCC-------CcEEEeeecccc
Confidence 9999987 666666655554422 34567899999999999964321 1 334433321 148999999999
Q ss_pred CHHHHHHHHHH
Q 030931 141 GLYEGLDWLAS 151 (169)
Q Consensus 141 gi~~~~~~l~~ 151 (169)
|+.++++.+.+
T Consensus 354 gl~~ll~~lr~ 364 (366)
T KOG1489|consen 354 GLEELLNGLRE 364 (366)
T ss_pred chHHHHHHHhh
Confidence 99999887754
No 243
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.55 E-value=7.9e-14 Score=116.04 Aligned_cols=138 Identities=20% Similarity=0.125 Sum_probs=89.6
Q ss_pred CCceeeeec-------eeeeeeeeeEEEEEEEECC------------------EEEEEEEcCCCCCchhhHHhhccCCCE
Q 030931 9 CTSCTLVKF-------YLLFLLLVRFNVEKVQYKN------------------VIFTVWDVGGQEKLRPLWRHYFNNTDG 63 (169)
Q Consensus 9 ~Ktsll~~f-------~~~~~~t~~~~~~~~~~~~------------------~~~~i~D~~G~~~~~~~~~~~~~~~~~ 63 (169)
+||||+..+ .+...-|+.+....+.... -.+.+||||||+.|..+....++.+|+
T Consensus 473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi 552 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL 552 (1049)
T ss_pred ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence 599999976 2333444444333333211 128999999999999888888899999
Q ss_pred EEEEEECCC---hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC------------------HhHHHh-----
Q 030931 64 LIYVVDSLD---RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT------------------PMEVCE----- 117 (169)
Q Consensus 64 ii~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~------------------~~~~~~----- 117 (169)
+++|+|+++ +.+++.+. .+ .. .++|+++|+||+|+..... ..++..
T Consensus 553 vlLVVDa~~Gi~~qT~e~I~----~l-k~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v 624 (1049)
T PRK14845 553 AVLVVDINEGFKPQTIEAIN----IL-RQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYEL 624 (1049)
T ss_pred EEEEEECcccCCHhHHHHHH----HH-HH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 999999986 34444332 22 21 2579999999999853111 011110
Q ss_pred -----hhCCCC-------CCCceeEEEEeeeccCCCHHHHHHHHHHHHH
Q 030931 118 -----GLGLFD-------LKNRKWHIQGTCALKGDGLYEGLDWLASTLK 154 (169)
Q Consensus 118 -----~~~~~~-------~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 154 (169)
..+... .-...++++++||++|+||++++.++.....
T Consensus 625 ~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~ 673 (1049)
T PRK14845 625 IGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ 673 (1049)
T ss_pred hhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence 111110 0023468999999999999999988875443
No 244
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.55 E-value=4.6e-14 Score=104.69 Aligned_cols=58 Identities=21% Similarity=0.048 Sum_probs=41.1
Q ss_pred CCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHH-HHHHHHHhhh
Q 030931 94 NSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD-WLASTLKEMR 157 (169)
Q Consensus 94 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~-~l~~~~~~~~ 157 (169)
.+|+++++||+|+.+. .+....+.. .....+++.+||+.+.|+.++.+ .+.+.+++..
T Consensus 214 ~KPvI~VlNK~Dl~~~---~~~~~~l~~---~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~ 272 (318)
T cd01899 214 SKPMVIAANKADIPDA---ENNISKLRL---KYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDS 272 (318)
T ss_pred CCcEEEEEEHHHccCh---HHHHHHHHh---hCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCC
Confidence 4799999999997532 222222221 12234699999999999999998 6888887643
No 245
>COG2262 HflX GTPases [General function prediction only]
Probab=99.54 E-value=8.9e-14 Score=103.81 Aligned_cols=143 Identities=15% Similarity=0.086 Sum_probs=100.9
Q ss_pred ccCCCCCceeeeec-------eeeeeeeeeEEEEEEEEC-CEEEEEEEcCCCCC---------chhhHHhhccCCCEEEE
Q 030931 4 VKQPYCTSCTLVKF-------YLLFLLLVRFNVEKVQYK-NVIFTVWDVGGQEK---------LRPLWRHYFNNTDGLIY 66 (169)
Q Consensus 4 ~~~~~~Ktsll~~f-------~~~~~~t~~~~~~~~~~~-~~~~~i~D~~G~~~---------~~~~~~~~~~~~~~ii~ 66 (169)
+=..+|||||+|++ .+..+.|.......+..+ +..+.+.||.|--+ |++... -...||.++.
T Consensus 199 GYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLE-E~~~aDlllh 277 (411)
T COG2262 199 GYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLE-EVKEADLLLH 277 (411)
T ss_pred eeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHH-HhhcCCEEEE
Confidence 34678999999976 456678888888888886 68999999999432 222222 2457999999
Q ss_pred EEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHH
Q 030931 67 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL 146 (169)
Q Consensus 67 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 146 (169)
|+|++++.....+ +-..+++.+-...++|+++|.||+|+..... ....... .. + +.+.+||++|+|++.++
T Consensus 278 VVDaSdp~~~~~~-~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~---~~~~~~~---~~-~-~~v~iSA~~~~gl~~L~ 348 (411)
T COG2262 278 VVDASDPEILEKL-EAVEDVLAEIGADEIPIILVLNKIDLLEDEE---ILAELER---GS-P-NPVFISAKTGEGLDLLR 348 (411)
T ss_pred EeecCChhHHHHH-HHHHHHHHHcCCCCCCEEEEEecccccCchh---hhhhhhh---cC-C-CeEEEEeccCcCHHHHH
Confidence 9999998543333 3333444544456799999999999754322 1111100 01 1 48999999999999999
Q ss_pred HHHHHHHHhh
Q 030931 147 DWLASTLKEM 156 (169)
Q Consensus 147 ~~l~~~~~~~ 156 (169)
+.|...+...
T Consensus 349 ~~i~~~l~~~ 358 (411)
T COG2262 349 ERIIELLSGL 358 (411)
T ss_pred HHHHHHhhhc
Confidence 9999988854
No 246
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.53 E-value=2.6e-14 Score=107.92 Aligned_cols=132 Identities=16% Similarity=0.174 Sum_probs=98.4
Q ss_pred eeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 030931 24 LVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANK 103 (169)
Q Consensus 24 t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK 103 (169)
|+-.....+.+.+++++|.|||||..|.......+...|++++++|+.+. .+.+.+.-+.+.+. .+.+.|+|.||
T Consensus 55 TILaKnTav~~~~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EG-pMPQTrFVlkKAl~----~gL~PIVVvNK 129 (603)
T COG1217 55 TILAKNTAVNYNGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALA----LGLKPIVVINK 129 (603)
T ss_pred EEEeccceeecCCeEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccC-CCCchhhhHHHHHH----cCCCcEEEEeC
Confidence 33344455888999999999999999999999999999999999999653 34455555555554 46788999999
Q ss_pred CCCCCCCCHhHHHhhhCCC-----CCCCceeEEEEeeeccCC----------CHHHHHHHHHHHHHhhhccc
Q 030931 104 QDMKGAMTPMEVCEGLGLF-----DLKNRKWHIQGTCALKGD----------GLYEGLDWLASTLKEMRAAG 160 (169)
Q Consensus 104 ~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~----------gi~~~~~~l~~~~~~~~~~~ 160 (169)
+|.+++...+.+.+.+.+. ...+..++++..||..|. ++..+|+.++++++.+....
T Consensus 130 iDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~~~ 201 (603)
T COG1217 130 IDRPDARPDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKGDL 201 (603)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCCCC
Confidence 9998876543333322211 114567899999998875 47789999999888876433
No 247
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.53 E-value=5.1e-15 Score=104.85 Aligned_cols=151 Identities=19% Similarity=0.200 Sum_probs=92.3
Q ss_pred ccccCCCCCceeeee----ce----eeeeeeeeEEEEEEEE-CCEEEEEEEcCCCCCchh-----hHHhhccCCCEEEEE
Q 030931 2 LRVKQPYCTSCTLVK----FY----LLFLLLVRFNVEKVQY-KNVIFTVWDVGGQEKLRP-----LWRHYFNNTDGLIYV 67 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~----f~----~~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~-----~~~~~~~~~~~ii~v 67 (169)
|.|..+|||||+..- +. ....||..++...+.+ +...+++||+||+..+.. .....++++.++|+|
T Consensus 4 LmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV 83 (232)
T PF04670_consen 4 LMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYV 83 (232)
T ss_dssp EEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEE
T ss_pred EEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEEEEE
Confidence 567899999997763 32 2334777777777765 788999999999986644 367789999999999
Q ss_pred EECCChhhHHH---HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH--------HHhhhCCCCCCCceeEEEEeee
Q 030931 68 VDSLDRERIGK---AKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME--------VCEGLGLFDLKNRKWHIQGTCA 136 (169)
Q Consensus 68 ~d~~~~~~~~~---~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~Sa 136 (169)
+|+.+.+-.+. ....+..+.+. .++..+.++..|+|+.......+ +.+...- .....+.++.||.
T Consensus 84 ~D~qs~~~~~~l~~~~~~i~~l~~~--sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~--~~~~~~~~~~TSI 159 (232)
T PF04670_consen 84 FDAQSDDYDEDLAYLSDCIEALRQY--SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELED--LGIEDITFFLTSI 159 (232)
T ss_dssp EETT-STCHHHHHHHHHHHHHHHHH--STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHH--TT-TSEEEEEE-T
T ss_pred EEcccccHHHHHHHHHHHHHHHHHh--CCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhh--ccccceEEEeccC
Confidence 99974442222 23334444332 36899999999999864322111 1111110 0111467888888
Q ss_pred ccCCCHHHHHHHHHHHHHhhh
Q 030931 137 LKGDGLYEGLDWLASTLKEMR 157 (169)
Q Consensus 137 ~~~~gi~~~~~~l~~~~~~~~ 157 (169)
.+. .+.+.+-.++..+....
T Consensus 160 ~D~-Sly~A~S~Ivq~LiP~~ 179 (232)
T PF04670_consen 160 WDE-SLYEAWSKIVQKLIPNL 179 (232)
T ss_dssp TST-HHHHHHHHHHHTTSTTH
T ss_pred cCc-HHHHHHHHHHHHHcccH
Confidence 874 68888888887766543
No 248
>CHL00071 tufA elongation factor Tu
Probab=99.53 E-value=5.8e-14 Score=107.95 Aligned_cols=136 Identities=18% Similarity=0.098 Sum_probs=86.9
Q ss_pred ccccCCCCCceeeeeceee-----------------------eeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhc
Q 030931 2 LRVKQPYCTSCTLVKFYLL-----------------------FLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYF 58 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~-----------------------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 58 (169)
+.+...+|||||++++... ...|+......+..++..+.+.||||+..|.......+
T Consensus 17 i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~~~~~~~~~ 96 (409)
T CHL00071 17 TIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYVKNMITGA 96 (409)
T ss_pred EECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHHHHHHHHHH
Confidence 4567899999999987321 22233333344555788899999999988877777778
Q ss_pred cCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCCH-----hHHHhhhCCCCCCCceeEEE
Q 030931 59 NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKGAMTP-----MEVCEGLGLFDLKNRKWHIQ 132 (169)
Q Consensus 59 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 132 (169)
..+|++++|+|+..... ......+..+.. .++| ++++.||+|+.+.... .++...+.........++++
T Consensus 97 ~~~D~~ilVvda~~g~~-~qt~~~~~~~~~----~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ii 171 (409)
T CHL00071 97 AQMDGAILVVSAADGPM-PQTKEHILLAKQ----VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFPGDDIPIV 171 (409)
T ss_pred HhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCCCcceEE
Confidence 89999999999975321 222333333321 2567 7789999998643211 12222222111122347899
Q ss_pred EeeeccCCCH
Q 030931 133 GTCALKGDGL 142 (169)
Q Consensus 133 ~~Sa~~~~gi 142 (169)
++||.+|.|+
T Consensus 172 ~~Sa~~g~n~ 181 (409)
T CHL00071 172 SGSALLALEA 181 (409)
T ss_pred Ecchhhcccc
Confidence 9999999743
No 249
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.52 E-value=1.3e-14 Score=104.29 Aligned_cols=110 Identities=24% Similarity=0.224 Sum_probs=79.6
Q ss_pred CCchhhHHhhccCCCEEEEEEECCChh-hHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhhhCCCCCC
Q 030931 48 EKLRPLWRHYFNNTDGLIYVVDSLDRE-RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM-EVCEGLGLFDLK 125 (169)
Q Consensus 48 ~~~~~~~~~~~~~~~~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~~~~~~~~ 125 (169)
+++..+.+.+++++|++++|||++++. +++.+..|+..+.. .++|+++|+||+||.+..... +..+.+ .
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~-----~ 94 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIY-----R 94 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHHH-----H
Confidence 566777788999999999999999876 89999999876532 479999999999996432211 222222 2
Q ss_pred CceeEEEEeeeccCCCHHHHHHHHHHHHHhhhccccccccccC
Q 030931 126 NRKWHIQGTCALKGDGLYEGLDWLASTLKEMRAAGYSSVGTSS 168 (169)
Q Consensus 126 ~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~~~~~~~~~~s 168 (169)
..+++++++||++|.|++++|+.+...+ .-..+.++.|+||
T Consensus 95 ~~g~~v~~~SAktg~gi~eLf~~l~~~~--~~~~G~sgvGKSt 135 (245)
T TIGR00157 95 NIGYQVLMTSSKNQDGLKELIEALQNRI--SVFAGQSGVGKSS 135 (245)
T ss_pred HCCCeEEEEecCCchhHHHHHhhhcCCE--EEEECCCCCCHHH
Confidence 3456799999999999999998876421 1123455566655
No 250
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.52 E-value=7.4e-14 Score=107.27 Aligned_cols=116 Identities=16% Similarity=0.054 Sum_probs=72.5
Q ss_pred eeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 030931 25 VRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQ 104 (169)
Q Consensus 25 ~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~ 104 (169)
+...+..+..++.++.++|||||++|.......+..+|++++|+|+.....-. ....+. ++... ...++++++||+
T Consensus 68 id~~~~~~~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~q-t~~~~~-~~~~~--~~~~iivviNK~ 143 (406)
T TIGR02034 68 IDVAYRYFSTDKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQ-TRRHSY-IASLL--GIRHVVLAVNKM 143 (406)
T ss_pred eEeeeEEEccCCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccc-cHHHHH-HHHHc--CCCcEEEEEEec
Confidence 33444556668889999999999998766667789999999999986542211 111111 11111 234689999999
Q ss_pred CCCCCCC--HhHHHhhhCC--CCCCCceeEEEEeeeccCCCHHH
Q 030931 105 DMKGAMT--PMEVCEGLGL--FDLKNRKWHIQGTCALKGDGLYE 144 (169)
Q Consensus 105 Dl~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~gi~~ 144 (169)
|+.+... .+++.+.+.. .......++++++||++|+|+.+
T Consensus 144 D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 144 DLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred ccccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 9864321 1112222210 00111245799999999999885
No 251
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.51 E-value=9.8e-14 Score=107.53 Aligned_cols=118 Identities=22% Similarity=0.193 Sum_probs=77.4
Q ss_pred eeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChh---hH---HHHHHHHHHHhcCCCCCCCe
Q 030931 23 LLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE---RI---GKAKQEFQAIIKDPFMLNSV 96 (169)
Q Consensus 23 ~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~p 96 (169)
.|+...+..++++++.+.+.|||||++|.......+..+|++++|+|+++.. .| ....+.+..+ .. .++|
T Consensus 71 iTid~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~-~~---~gi~ 146 (446)
T PTZ00141 71 ITIDIALWKFETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLA-FT---LGVK 146 (446)
T ss_pred EeEEeeeEEEccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHH-HH---cCCC
Confidence 3444556667778999999999999999888888889999999999997532 01 1222222222 11 2555
Q ss_pred -EEEEEeCCCCCCC----CCH----hHHHhhhCCCCCCCceeEEEEeeeccCCCHHH
Q 030931 97 -ILVFANKQDMKGA----MTP----MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 144 (169)
Q Consensus 97 -iivv~nK~Dl~~~----~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 144 (169)
++++.||+|.... ... .++...+.........++++++||.+|+|+.+
T Consensus 147 ~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 147 QMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred eEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 7799999995321 111 23333332222223457899999999999864
No 252
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.50 E-value=1.4e-13 Score=106.65 Aligned_cols=116 Identities=16% Similarity=0.160 Sum_probs=76.8
Q ss_pred eeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH-------HHHHHHHHHhcCCCCCCC-
Q 030931 24 LVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG-------KAKQEFQAIIKDPFMLNS- 95 (169)
Q Consensus 24 t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~-------~~~~~~~~~~~~~~~~~~- 95 (169)
|+...+..+..+++.+++.|+|||++|.......+..+|++|+|+|+++ ..|+ .....+... +. .++
T Consensus 72 Ti~~~~~~~~~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~-G~~e~g~~~~~qT~eh~~~~-~~---~gi~ 146 (447)
T PLN00043 72 TIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT-GGFEAGISKDGQTREHALLA-FT---LGVK 146 (447)
T ss_pred eEEEEEEEecCCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc-CceecccCCCchHHHHHHHH-HH---cCCC
Confidence 3444455567789999999999999999988889999999999999976 2221 233222222 11 245
Q ss_pred eEEEEEeCCCCCCC-CC-------HhHHHhhhCCCCCCCceeEEEEeeeccCCCHHH
Q 030931 96 VILVFANKQDMKGA-MT-------PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 144 (169)
Q Consensus 96 piivv~nK~Dl~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 144 (169)
++++++||+|+.+. .+ .+++...+.........++++++||.+|+|+.+
T Consensus 147 ~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 147 QMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred cEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 57889999998621 11 222333222111122346899999999999854
No 253
>PRK00049 elongation factor Tu; Reviewed
Probab=99.50 E-value=1.8e-13 Score=104.79 Aligned_cols=147 Identities=18% Similarity=0.099 Sum_probs=92.5
Q ss_pred ccccCCCCCceeeeecee-----------------------eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhc
Q 030931 2 LRVKQPYCTSCTLVKFYL-----------------------LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYF 58 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~-----------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 58 (169)
+.+..++|||||++++.. ...-|+......+..++..+.+.||||+.+|.......+
T Consensus 17 iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~~~~~~~~ 96 (396)
T PRK00049 17 TIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGA 96 (396)
T ss_pred EEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHHHHHHhhh
Confidence 356789999999997621 223344444444555788899999999988877666778
Q ss_pred cCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEE-EEEeCCCCCCCCC-H----hHHHhhhCCCCCCCceeEEE
Q 030931 59 NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVIL-VFANKQDMKGAMT-P----MEVCEGLGLFDLKNRKWHIQ 132 (169)
Q Consensus 59 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii-vv~nK~Dl~~~~~-~----~~~~~~~~~~~~~~~~~~~~ 132 (169)
..+|++++|+|+.+... ......+..+.. .+.|.+ +++||+|+.+... . .++...+..........+++
T Consensus 97 ~~aD~~llVVDa~~g~~-~qt~~~~~~~~~----~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~iv 171 (396)
T PRK00049 97 AQMDGAILVVSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPII 171 (396)
T ss_pred ccCCEEEEEEECCCCCc-hHHHHHHHHHHH----cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCccCCcEE
Confidence 89999999999976422 222233333321 257865 6899999864211 1 12222222111122346799
Q ss_pred EeeeccCC----------CHHHHHHHHHHHH
Q 030931 133 GTCALKGD----------GLYEGLDWLASTL 153 (169)
Q Consensus 133 ~~Sa~~~~----------gi~~~~~~l~~~~ 153 (169)
++||+++. |+..+++.+...+
T Consensus 172 ~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 172 RGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred EeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 99999875 4566666666544
No 254
>PRK12739 elongation factor G; Reviewed
Probab=99.49 E-value=1.8e-13 Score=111.46 Aligned_cols=102 Identities=15% Similarity=0.120 Sum_probs=76.0
Q ss_pred ccccCCCCCceeeeecee-------------------------eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHh
Q 030931 2 LRVKQPYCTSCTLVKFYL-------------------------LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRH 56 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~-------------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 56 (169)
+++..++|||||++++-. ...-|+.....++.++++++.++||||+..|...+..
T Consensus 13 iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f~~e~~~ 92 (691)
T PRK12739 13 IMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDFTIEVER 92 (691)
T ss_pred EECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHHHHHHHH
Confidence 456889999999998611 2233444556678889999999999999988888889
Q ss_pred hccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030931 57 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG 108 (169)
Q Consensus 57 ~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 108 (169)
.++.+|++++|+|+.+...-.. ...+..+.. .++|+++++||+|+.+
T Consensus 93 al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~~----~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 93 SLRVLDGAVAVFDAVSGVEPQS-ETVWRQADK----YGVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCCCC
Confidence 9999999999999976533222 222333321 3689999999999874
No 255
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.48 E-value=8.4e-14 Score=97.17 Aligned_cols=148 Identities=12% Similarity=0.006 Sum_probs=86.9
Q ss_pred ccccCCCCCceeeeeceeee-----eeeeeE-EE--E--EEEE-CCEEEEEEEcCCCCCchhhHHh-----hccCCCEEE
Q 030931 2 LRVKQPYCTSCTLVKFYLLF-----LLLVRF-NV--E--KVQY-KNVIFTVWDVGGQEKLRPLWRH-----YFNNTDGLI 65 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~-----~~t~~~-~~--~--~~~~-~~~~~~i~D~~G~~~~~~~~~~-----~~~~~~~ii 65 (169)
+++..|+|||||+|.+.... .++.+. .. . .+.. ....+.+|||||.......... .+.++|.++
T Consensus 6 i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l 85 (197)
T cd04104 6 VTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFI 85 (197)
T ss_pred EECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccCcCEEE
Confidence 57899999999999874322 222221 11 0 1111 1236899999997653322222 366789988
Q ss_pred EEEECCChhhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---------HhHHHhhhCCC---CCC---Ccee
Q 030931 66 YVVDSLDRERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMT---------PMEVCEGLGLF---DLK---NRKW 129 (169)
Q Consensus 66 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---------~~~~~~~~~~~---~~~---~~~~ 129 (169)
++.|. ++.... .+++.+ +.. +.|+++|+||+|+..... .+++...+... ... -...
T Consensus 86 ~v~~~----~~~~~d~~~~~~l-~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p 157 (197)
T cd04104 86 IISST----RFSSNDVKLAKAI-QCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGVSEP 157 (197)
T ss_pred EEeCC----CCCHHHHHHHHHH-HHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 88532 233333 334433 322 579999999999842111 11111111100 001 1223
Q ss_pred EEEEeeec--cCCCHHHHHHHHHHHHHhhh
Q 030931 130 HIQGTCAL--KGDGLYEGLDWLASTLKEMR 157 (169)
Q Consensus 130 ~~~~~Sa~--~~~gi~~~~~~l~~~~~~~~ 157 (169)
++|.+|+. .+.|+..+.+.+...+.+.+
T Consensus 158 ~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~ 187 (197)
T cd04104 158 PVFLVSNFDPSDYDFPKLRETLLKDLPAHK 187 (197)
T ss_pred CEEEEeCCChhhcChHHHHHHHHHHhhHHH
Confidence 68999998 67999999999999988754
No 256
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.48 E-value=8.4e-14 Score=108.66 Aligned_cols=117 Identities=16% Similarity=0.067 Sum_probs=72.4
Q ss_pred eeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 030931 25 VRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQ 104 (169)
Q Consensus 25 ~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~ 104 (169)
+...+..+..++..+.++|||||+.|.......++.+|++++|+|+.....-.....+ .++... ...|+++++||+
T Consensus 95 id~~~~~~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~--~l~~~l--g~~~iIvvvNKi 170 (474)
T PRK05124 95 IDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS--FIATLL--GIKHLVVAVNKM 170 (474)
T ss_pred eEeeEEEeccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH--HHHHHh--CCCceEEEEEee
Confidence 3344455666788999999999998876666667999999999999653211111111 111111 124789999999
Q ss_pred CCCCCCC--HhHHHhhhCC--CCCC-CceeEEEEeeeccCCCHHHH
Q 030931 105 DMKGAMT--PMEVCEGLGL--FDLK-NRKWHIQGTCALKGDGLYEG 145 (169)
Q Consensus 105 Dl~~~~~--~~~~~~~~~~--~~~~-~~~~~~~~~Sa~~~~gi~~~ 145 (169)
|+.+... ..++.+.+.. .... ....+++++||++|+|+.+.
T Consensus 171 D~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 171 DLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred ccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 9864221 1222222210 0001 12467999999999999764
No 257
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.47 E-value=4.2e-13 Score=97.63 Aligned_cols=146 Identities=14% Similarity=0.018 Sum_probs=103.3
Q ss_pred ccCCCCCceeeeec-------eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCc--hh------hHHhhcc-CCCEEEEE
Q 030931 4 VKQPYCTSCTLVKF-------YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKL--RP------LWRHYFN-NTDGLIYV 67 (169)
Q Consensus 4 ~~~~~~Ktsll~~f-------~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~--~~------~~~~~~~-~~~~ii~v 67 (169)
+-|.+|||||++.+ .+-+++|.++++.+++.+..++|+.||||.-.. .. ..-..++ =.++++|+
T Consensus 175 G~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~ 254 (346)
T COG1084 175 GYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFL 254 (346)
T ss_pred cCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEE
Confidence 46889999999965 567788999999999999999999999995431 11 1111222 36899999
Q ss_pred EECCChh--hHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHH
Q 030931 68 VDSLDRE--RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG 145 (169)
Q Consensus 68 ~d~~~~~--~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 145 (169)
||++... +.+.-..+++++.... +.|+++|.||+|+.+....++....+. ...+.....+++..+.+++.+
T Consensus 255 ~D~Se~cgy~lE~Q~~L~~eIk~~f---~~p~v~V~nK~D~~~~e~~~~~~~~~~----~~~~~~~~~~~~~~~~~~d~~ 327 (346)
T COG1084 255 FDPSETCGYSLEEQISLLEEIKELF---KAPIVVVINKIDIADEEKLEEIEASVL----EEGGEEPLKISATKGCGLDKL 327 (346)
T ss_pred EcCccccCCCHHHHHHHHHHHHHhc---CCCeEEEEecccccchhHHHHHHHHHH----hhccccccceeeeehhhHHHH
Confidence 9998654 4556666777775544 389999999999875443333333222 122223678899999999888
Q ss_pred HHHHHHHHHhh
Q 030931 146 LDWLASTLKEM 156 (169)
Q Consensus 146 ~~~l~~~~~~~ 156 (169)
-..+.....+.
T Consensus 328 ~~~v~~~a~~~ 338 (346)
T COG1084 328 REEVRKTALEP 338 (346)
T ss_pred HHHHHHHhhch
Confidence 77777765554
No 258
>PLN03126 Elongation factor Tu; Provisional
Probab=99.47 E-value=4.7e-13 Score=104.27 Aligned_cols=135 Identities=17% Similarity=0.088 Sum_probs=87.1
Q ss_pred ccccCCCCCceeeeecee-----------------------eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhc
Q 030931 2 LRVKQPYCTSCTLVKFYL-----------------------LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYF 58 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~-----------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 58 (169)
+++..++|||||++++.. ...-|+......+..++..+.++|+|||+.|.......+
T Consensus 86 iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~ 165 (478)
T PLN03126 86 TIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGA 165 (478)
T ss_pred EECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHHHHHHHHH
Confidence 456789999999997631 111223233444566788999999999999887777778
Q ss_pred cCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCC-Hh----HHHhhhCCCCCCCceeEEE
Q 030931 59 NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKGAMT-PM----EVCEGLGLFDLKNRKWHIQ 132 (169)
Q Consensus 59 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~-~~----~~~~~~~~~~~~~~~~~~~ 132 (169)
..+|++++|+|+.+... ....+++..+.. .++| +++++||+|+.+... .+ ++...+.........++++
T Consensus 166 ~~aD~ailVVda~~G~~-~qt~e~~~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~v 240 (478)
T PLN03126 166 AQMDGAILVVSGADGPM-PQTKEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDDIPII 240 (478)
T ss_pred hhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCcCcceEE
Confidence 89999999999875422 223333333321 2567 788999999864211 11 2222222111122467899
Q ss_pred EeeeccCCC
Q 030931 133 GTCALKGDG 141 (169)
Q Consensus 133 ~~Sa~~~~g 141 (169)
++||.++.+
T Consensus 241 p~Sa~~g~n 249 (478)
T PLN03126 241 SGSALLALE 249 (478)
T ss_pred EEEcccccc
Confidence 999998854
No 259
>PLN03127 Elongation factor Tu; Provisional
Probab=99.46 E-value=6.7e-13 Score=102.84 Aligned_cols=148 Identities=15% Similarity=0.094 Sum_probs=91.7
Q ss_pred ccccCCCCCceeeeecee-----------------------eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhc
Q 030931 2 LRVKQPYCTSCTLVKFYL-----------------------LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYF 58 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~-----------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 58 (169)
+++-.++|||||++++.. +...|+......++.++..+.+.||||+.+|........
T Consensus 66 iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~g~ 145 (447)
T PLN03127 66 TIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGA 145 (447)
T ss_pred EECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccchHHHHHHHH
Confidence 345778999999997621 022344444455666788999999999998877666667
Q ss_pred cCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCCH-h----HHHhhhCCCCCCCceeEEE
Q 030931 59 NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKGAMTP-M----EVCEGLGLFDLKNRKWHIQ 132 (169)
Q Consensus 59 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~-~----~~~~~~~~~~~~~~~~~~~ 132 (169)
..+|++++|+|+.+... ....+.+..+ .. .++| +++++||+|+.+.... + ++.+.+.........++++
T Consensus 146 ~~aD~allVVda~~g~~-~qt~e~l~~~-~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~~~~vpii 220 (447)
T PLN03127 146 AQMDGGILVVSAPDGPM-PQTKEHILLA-RQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFPGDEIPII 220 (447)
T ss_pred hhCCEEEEEEECCCCCc-hhHHHHHHHH-HH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCCCCcceEE
Confidence 78999999999865421 2222223322 21 2578 5789999998642111 1 1222221111112346788
Q ss_pred Eeeec---cCCC-------HHHHHHHHHHHHH
Q 030931 133 GTCAL---KGDG-------LYEGLDWLASTLK 154 (169)
Q Consensus 133 ~~Sa~---~~~g-------i~~~~~~l~~~~~ 154 (169)
++||. +|.| +.++++.+...+.
T Consensus 221 p~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 221 RGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred EeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 88875 5555 6677777776654
No 260
>PRK00007 elongation factor G; Reviewed
Probab=99.45 E-value=6.7e-13 Score=108.09 Aligned_cols=102 Identities=14% Similarity=0.118 Sum_probs=74.4
Q ss_pred ccccCCCCCceeeeece-------------------------eeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHh
Q 030931 2 LRVKQPYCTSCTLVKFY-------------------------LLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRH 56 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~-------------------------~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 56 (169)
|++..++|||||++++- .....|+......+.++++++++.||||+..|......
T Consensus 15 iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f~~ev~~ 94 (693)
T PRK00007 15 IMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDFTIEVER 94 (693)
T ss_pred EECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHHHHHHHH
Confidence 46788999999999871 12223444445667889999999999999888777777
Q ss_pred hccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030931 57 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG 108 (169)
Q Consensus 57 ~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 108 (169)
.++.+|++++|+|......-.. ...+..+.+ .++|+++++||+|+.+
T Consensus 95 al~~~D~~vlVvda~~g~~~qt-~~~~~~~~~----~~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 95 SLRVLDGAVAVFDAVGGVEPQS-ETVWRQADK----YKVPRIAFVNKMDRTG 141 (693)
T ss_pred HHHHcCEEEEEEECCCCcchhh-HHHHHHHHH----cCCCEEEEEECCCCCC
Confidence 8899999999999875433332 222333322 3678999999999864
No 261
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.45 E-value=8.1e-13 Score=90.34 Aligned_cols=143 Identities=19% Similarity=0.146 Sum_probs=92.1
Q ss_pred cccCCCCCceeeeece---------eeeeeeeeEEEEEEEECCEEEEEEEcCCC----------CCchhhHHhhcc---C
Q 030931 3 RVKQPYCTSCTLVKFY---------LLFLLLVRFNVEKVQYKNVIFTVWDVGGQ----------EKLRPLWRHYFN---N 60 (169)
Q Consensus 3 ~~~~~~~Ktsll~~f~---------~~~~~t~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~~~~~~---~ 60 (169)
.+-..+|||||+|.+. ..+.-|.-+++..++.+ +.+.|.||- +....+...|++ +
T Consensus 30 ~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~ 106 (200)
T COG0218 30 AGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRAN 106 (200)
T ss_pred EccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchh
Confidence 3567899999999763 34445555555555444 889999993 333445556665 4
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH----hHHHhhhCCCCCCCceeEEEEeee
Q 030931 61 TDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP----MEVCEGLGLFDLKNRKWHIQGTCA 136 (169)
Q Consensus 61 ~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa 136 (169)
..+++.++|+.....-.+ ..+-+++.. .++|+++++||+|..+.... ..+.+.+....... ..++..|+
T Consensus 107 L~~vvlliD~r~~~~~~D--~em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~--~~~~~~ss 179 (200)
T COG0218 107 LKGVVLLIDARHPPKDLD--REMIEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDD--QWVVLFSS 179 (200)
T ss_pred heEEEEEEECCCCCcHHH--HHHHHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCcc--ceEEEEec
Confidence 578889999865443322 222233322 38999999999998764332 33444444332111 12888999
Q ss_pred ccCCCHHHHHHHHHHHHHh
Q 030931 137 LKGDGLYEGLDWLASTLKE 155 (169)
Q Consensus 137 ~~~~gi~~~~~~l~~~~~~ 155 (169)
.++.|++++...|.+.+..
T Consensus 180 ~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 180 LKKKGIDELKAKILEWLKE 198 (200)
T ss_pred ccccCHHHHHHHHHHHhhc
Confidence 9999999999888876654
No 262
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.45 E-value=1.1e-12 Score=94.65 Aligned_cols=149 Identities=15% Similarity=0.050 Sum_probs=93.7
Q ss_pred ccccCCCCCceeeeeceeee--------eeeeeEEEEEEEECCEEEEEEEcCCCCC------chh------hHHhhccCC
Q 030931 2 LRVKQPYCTSCTLVKFYLLF--------LLLVRFNVEKVQYKNVIFTVWDVGGQEK------LRP------LWRHYFNNT 61 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~--------~~t~~~~~~~~~~~~~~~~i~D~~G~~~------~~~------~~~~~~~~~ 61 (169)
+++.+..|||||.|+..... ..|..-....+..+...+.++||||.-. ... ........|
T Consensus 77 vIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~A 156 (379)
T KOG1423|consen 77 VIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNA 156 (379)
T ss_pred EEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhC
Confidence 57799999999999763322 2222223333455899999999999322 111 122356789
Q ss_pred CEEEEEEECCChhhH--HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-----------------HhHHHhhhCCC
Q 030931 62 DGLIYVVDSLDRERI--GKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-----------------PMEVCEGLGLF 122 (169)
Q Consensus 62 ~~ii~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-----------------~~~~~~~~~~~ 122 (169)
|.++.|+|+++.... ..+...++.+ ..+|-++|.||.|...+.. ..++.+.+...
T Consensus 157 D~vvVv~Das~tr~~l~p~vl~~l~~y------s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~ 230 (379)
T KOG1423|consen 157 DCVVVVVDASATRTPLHPRVLHMLEEY------SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDV 230 (379)
T ss_pred CEEEEEEeccCCcCccChHHHHHHHHH------hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHhccC
Confidence 999999999863222 1222233333 4789999999999764311 12222222211
Q ss_pred C-----CCCcee----EEEEeeeccCCCHHHHHHHHHHHHHhh
Q 030931 123 D-----LKNRKW----HIQGTCALKGDGLYEGLDWLASTLKEM 156 (169)
Q Consensus 123 ~-----~~~~~~----~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (169)
. ....+| .+|.+||++|+||+++-++++.++...
T Consensus 231 p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~g 273 (379)
T KOG1423|consen 231 PSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPG 273 (379)
T ss_pred CcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCC
Confidence 1 011222 489999999999999999999877654
No 263
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.41 E-value=4.5e-13 Score=108.21 Aligned_cols=112 Identities=17% Similarity=0.050 Sum_probs=69.3
Q ss_pred EEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030931 29 VEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG 108 (169)
Q Consensus 29 ~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 108 (169)
+..+..++.++.++||||++.|.......+..+|++++|+|+.....- .....+..+ ... ...|+++++||+|+.+
T Consensus 96 ~~~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~-~t~e~~~~~-~~~--~~~~iivvvNK~D~~~ 171 (632)
T PRK05506 96 YRYFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLT-QTRRHSFIA-SLL--GIRHVVLAVNKMDLVD 171 (632)
T ss_pred eeEEccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccc-cCHHHHHHH-HHh--CCCeEEEEEEeccccc
Confidence 345666788999999999998876666678899999999999653211 111111111 111 2368999999999864
Q ss_pred CCC--HhHHHhhhCC--CCCCCceeEEEEeeeccCCCHHH
Q 030931 109 AMT--PMEVCEGLGL--FDLKNRKWHIQGTCALKGDGLYE 144 (169)
Q Consensus 109 ~~~--~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~gi~~ 144 (169)
... ..++...+.. ........+++++||++|.|+.+
T Consensus 172 ~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 172 YDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred chhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 211 1222222210 00011235689999999999874
No 264
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.41 E-value=1.2e-12 Score=95.79 Aligned_cols=152 Identities=22% Similarity=0.128 Sum_probs=97.8
Q ss_pred ccccCCCCCceeeeec-------eeeeeeeeeEEEEEEEE-CCEEEEEEEcCCCCCc-------hhhHHhhccCCCEEEE
Q 030931 2 LRVKQPYCTSCTLVKF-------YLLFLLLVRFNVEKVQY-KNVIFTVWDVGGQEKL-------RPLWRHYFNNTDGLIY 66 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-------~~~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~-------~~~~~~~~~~~~~ii~ 66 (169)
|++=|..|||||++.+ .+.+++|+-.+...+.. ....|.+-|.||.-.- ....-..+..+.++++
T Consensus 164 LVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~h 243 (369)
T COG0536 164 LVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLH 243 (369)
T ss_pred cccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhhheeEE
Confidence 3456889999999965 34445555555555554 5666999999994321 1122345678999999
Q ss_pred EEECCChh---hHHHHHHHHHHHhc-CCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCCCCCceeE-EEEeeeccCC
Q 030931 67 VVDSLDRE---RIGKAKQEFQAIIK-DPFMLNSVILVFANKQDMKGAM-TPMEVCEGLGLFDLKNRKWH-IQGTCALKGD 140 (169)
Q Consensus 67 v~d~~~~~---~~~~~~~~~~~~~~-~~~~~~~piivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~ 140 (169)
|+|++..+ ..++......++.. ...+.+.|.++|+||+|+.... ..+...+.+. ...++. .+.+||.+++
T Consensus 244 viD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~----~~~~~~~~~~ISa~t~~ 319 (369)
T COG0536 244 VIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALA----EALGWEVFYLISALTRE 319 (369)
T ss_pred EEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHH----HhcCCCcceeeehhccc
Confidence 99998544 24443333333332 3455689999999999965332 1222222221 112222 1129999999
Q ss_pred CHHHHHHHHHHHHHhhh
Q 030931 141 GLYEGLDWLASTLKEMR 157 (169)
Q Consensus 141 gi~~~~~~l~~~~~~~~ 157 (169)
|++++...+.+.+.+..
T Consensus 320 g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 320 GLDELLRALAELLEETK 336 (369)
T ss_pred CHHHHHHHHHHHHHHhh
Confidence 99999999999888775
No 265
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=2.7e-12 Score=97.69 Aligned_cols=164 Identities=14% Similarity=0.008 Sum_probs=102.4
Q ss_pred ccccCCCCCceeeeece--------eeeeeeeeEEEEEEEECCEEEEEEEcCCCCC-chh--------hHHhhccCCCEE
Q 030931 2 LRVKQPYCTSCTLVKFY--------LLFLLLVRFNVEKVQYKNVIFTVWDVGGQEK-LRP--------LWRHYFNNTDGL 64 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~--------~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~-~~~--------~~~~~~~~~~~i 64 (169)
|++.+.+|||||+|.+. +....|-..-...++..++++.+.||+|..+ -.. .....++.||.+
T Consensus 273 IvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi 352 (531)
T KOG1191|consen 273 IVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVI 352 (531)
T ss_pred EEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEE
Confidence 56799999999999874 3444444444456778999999999999655 111 123456789999
Q ss_pred EEEEEC--CChhhHHHHHHHHHHHhc-----CCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCCCCCceeEEEEeee
Q 030931 65 IYVVDS--LDRERIGKAKQEFQAIIK-----DPFMLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCA 136 (169)
Q Consensus 65 i~v~d~--~~~~~~~~~~~~~~~~~~-----~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa 136 (169)
++|+|+ ++.++-..+...+...-. .......|++++.||.|+....+. ......+.........-...++|+
T Consensus 353 ~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~~i~~~vs~ 432 (531)
T KOG1191|consen 353 LLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVFPIVVEVSC 432 (531)
T ss_pred EEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCcccceEEEeee
Confidence 999999 333333333333332211 122345899999999998654211 110001111111112223566999
Q ss_pred ccCCCHHHHHHHHHHHHHhhhcccccccc
Q 030931 137 LKGDGLYEGLDWLASTLKEMRAAGYSSVG 165 (169)
Q Consensus 137 ~~~~gi~~~~~~l~~~~~~~~~~~~~~~~ 165 (169)
++++|++++...+...+.....+...++.
T Consensus 433 ~tkeg~~~L~~all~~~~~~~~~~~s~~~ 461 (531)
T KOG1191|consen 433 TTKEGCERLSTALLNIVERLVVSPHSAPP 461 (531)
T ss_pred chhhhHHHHHHHHHHHHHHhhcCCCCCch
Confidence 99999999999999888777654444433
No 266
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.40 E-value=1.5e-12 Score=83.24 Aligned_cols=96 Identities=18% Similarity=0.153 Sum_probs=65.2
Q ss_pred ccccCCCCCceeeeecee--------eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchh---------hHHhhccCCCEE
Q 030931 2 LRVKQPYCTSCTLVKFYL--------LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRP---------LWRHYFNNTDGL 64 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~--------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~---------~~~~~~~~~~~i 64 (169)
|++.+++|||||++.+.. ....|.......+...+..+.++||||...-.. .....+..+|++
T Consensus 4 iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~i 83 (116)
T PF01926_consen 4 IIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLI 83 (116)
T ss_dssp EEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEE
T ss_pred EECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEE
Confidence 678999999999997733 223344455566777899999999999654211 122334789999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 030931 65 IYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANK 103 (169)
Q Consensus 65 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK 103 (169)
++|+|.+++.. +...+.++.+ + .+.|+++|+||
T Consensus 84 i~vv~~~~~~~-~~~~~~~~~l-~----~~~~~i~v~NK 116 (116)
T PF01926_consen 84 IYVVDASNPIT-EDDKNILREL-K----NKKPIILVLNK 116 (116)
T ss_dssp EEEEETTSHSH-HHHHHHHHHH-H----TTSEEEEEEES
T ss_pred EEEEECCCCCC-HHHHHHHHHH-h----cCCCEEEEEcC
Confidence 99999876322 2222333333 2 47999999998
No 267
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.37 E-value=4.8e-12 Score=92.00 Aligned_cols=142 Identities=19% Similarity=0.079 Sum_probs=95.6
Q ss_pred ccCCCCCceeeeece-------eeeeeeeeEEEEEEEECCEEEEEEEcCCCCCc-------hhhHHhhccCCCEEEEEEE
Q 030931 4 VKQPYCTSCTLVKFY-------LLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKL-------RPLWRHYFNNTDGLIYVVD 69 (169)
Q Consensus 4 ~~~~~~Ktsll~~f~-------~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~~~~ii~v~d 69 (169)
+=|-+|||||+++++ .-.++|.......+++++..+|+.|+||.-.- ....-...+.||.+++|+|
T Consensus 70 GfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld 149 (365)
T COG1163 70 GFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLD 149 (365)
T ss_pred cCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEe
Confidence 348899999999873 33455555555668889999999999984322 1234456789999999999
Q ss_pred CCChhh-HHHHHHHHH----------------------------------------HHhcC-------------------
Q 030931 70 SLDRER-IGKAKQEFQ----------------------------------------AIIKD------------------- 89 (169)
Q Consensus 70 ~~~~~~-~~~~~~~~~----------------------------------------~~~~~------------------- 89 (169)
+..... .+.+.+.+. .++++
T Consensus 150 ~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~ 229 (365)
T COG1163 150 VFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIREDVTLDDL 229 (365)
T ss_pred cCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEecCCcHHHH
Confidence 975433 222222111 11111
Q ss_pred -----CCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHh
Q 030931 90 -----PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE 155 (169)
Q Consensus 90 -----~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 155 (169)
.+..-+|.+.|.||+|+... +++....... +++.+||.++.|++++.+.+.+.+.-
T Consensus 230 id~l~~nrvY~p~l~v~NKiD~~~~---e~~~~l~~~~-------~~v~isa~~~~nld~L~e~i~~~L~l 290 (365)
T COG1163 230 IDALEGNRVYKPALYVVNKIDLPGL---EELERLARKP-------NSVPISAKKGINLDELKERIWDVLGL 290 (365)
T ss_pred HHHHhhcceeeeeEEEEecccccCH---HHHHHHHhcc-------ceEEEecccCCCHHHHHHHHHHhhCe
Confidence 11124799999999998753 3333322211 48999999999999999999987654
No 268
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.35 E-value=3.7e-12 Score=88.81 Aligned_cols=154 Identities=14% Similarity=-0.032 Sum_probs=92.5
Q ss_pred ccccCCCCCceeeeeceee---------eeeeeeEEEEEEEECCEEEEEEEcCCCCCchh--------h---HHhhccCC
Q 030931 2 LRVKQPYCTSCTLVKFYLL---------FLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRP--------L---WRHYFNNT 61 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~---------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~---~~~~~~~~ 61 (169)
|++++|+|||||+|.+... ...|..........++..+.++||||-..... + ......++
T Consensus 5 lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~ 84 (196)
T cd01852 5 LVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGP 84 (196)
T ss_pred EECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCC
Confidence 6789999999999976221 13344555566667889999999999654321 1 11224578
Q ss_pred CEEEEEEECCChh-hHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---CCCCCCceeEEEEee--
Q 030931 62 DGLIYVVDSLDRE-RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLG---LFDLKNRKWHIQGTC-- 135 (169)
Q Consensus 62 ~~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~---~~~~~~~~~~~~~~S-- 135 (169)
|++++|+|+.+.. ....+.+++.+..... .-.+++++.|+.|.......++...... ....+.++-.|+..+
T Consensus 85 ~~illVi~~~~~t~~d~~~l~~l~~~fg~~--~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~f~~~ 162 (196)
T cd01852 85 HAFLLVVPLGRFTEEEEQAVETLQELFGEK--VLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVAFNNK 162 (196)
T ss_pred EEEEEEEECCCcCHHHHHHHHHHHHHhChH--hHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEEEeCC
Confidence 9999999987621 2233344555543321 1258899999999654332222111110 000122222343333
Q ss_pred ---eccCCCHHHHHHHHHHHHHhhh
Q 030931 136 ---ALKGDGLYEGLDWLASTLKEMR 157 (169)
Q Consensus 136 ---a~~~~gi~~~~~~l~~~~~~~~ 157 (169)
+..+.++.++++.+.+.+.+..
T Consensus 163 ~~~~~~~~q~~~Ll~~i~~~~~~~~ 187 (196)
T cd01852 163 AKGEEQEQQVKELLAKVESMVKENG 187 (196)
T ss_pred CCcchhHHHHHHHHHHHHHHHHhcC
Confidence 5667889999999988888744
No 269
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.32 E-value=1.1e-12 Score=99.92 Aligned_cols=152 Identities=14% Similarity=0.083 Sum_probs=105.3
Q ss_pred ccCCCCCceeeeec-------eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHH--------h-hccCCCEEEEE
Q 030931 4 VKQPYCTSCTLVKF-------YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWR--------H-YFNNTDGLIYV 67 (169)
Q Consensus 4 ~~~~~~Ktsll~~f-------~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~--------~-~~~~~~~ii~v 67 (169)
+-+.+||||+++.. .+..++|.++-+.++++.-..+++.||||....--.-. . ..+=-.+++|+
T Consensus 175 G~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYf 254 (620)
T KOG1490|consen 175 GYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYF 254 (620)
T ss_pred cCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheee
Confidence 47899999999865 45667777777788888888999999999554211100 0 11123678999
Q ss_pred EECCChh--hHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHH
Q 030931 68 VDSLDRE--RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG 145 (169)
Q Consensus 68 ~d~~~~~--~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 145 (169)
.|++... +...-.++++.+.. ...+.|+|+|+||+|+....+..+-...+-.......+++++++|+.+.+|+.++
T Consensus 255 mDLSe~CGySva~QvkLfhsIKp--LFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~~eegVm~V 332 (620)
T KOG1490|consen 255 MDLSEMCGYSVAAQVKLYHSIKP--LFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSCVQEEGVMDV 332 (620)
T ss_pred eechhhhCCCHHHHHHHHHHhHH--HhcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEecccchhceeeH
Confidence 9998654 44555566766633 3468999999999998665443322222221222344578999999999999999
Q ss_pred HHHHHHHHHhhh
Q 030931 146 LDWLASTLKEMR 157 (169)
Q Consensus 146 ~~~l~~~~~~~~ 157 (169)
....|+.+...+
T Consensus 333 rt~ACe~LLa~R 344 (620)
T KOG1490|consen 333 RTTACEALLAAR 344 (620)
T ss_pred HHHHHHHHHHHH
Confidence 999998777654
No 270
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.31 E-value=1.8e-11 Score=93.52 Aligned_cols=56 Identities=16% Similarity=0.035 Sum_probs=38.3
Q ss_pred CCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHH-HHHHHHHHHHhh
Q 030931 94 NSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE-GLDWLASTLKEM 156 (169)
Q Consensus 94 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~-~~~~l~~~~~~~ 156 (169)
.+|+++|+||.|+.... ..+...... ....++.+||+.+.++.+ +.+.+.+.+...
T Consensus 217 ~KPvI~VlNK~D~~~~~--~~l~~i~~~-----~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~ 273 (396)
T PRK09602 217 SKPMVIAANKADLPPAE--ENIERLKEE-----KYYIVVPTSAEAELALRRAAKAGLIDYIPGD 273 (396)
T ss_pred CCCEEEEEEchhcccch--HHHHHHHhc-----CCCcEEEEcchhhhhHHHHHHHhHHhhCCCC
Confidence 48999999999975321 112222211 123489999999999999 777777766554
No 271
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.29 E-value=4.1e-11 Score=89.01 Aligned_cols=137 Identities=23% Similarity=0.362 Sum_probs=106.7
Q ss_pred eeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC----------hhhHHHHHHHHHHHhcCC
Q 030931 21 FLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD----------RERIGKAKQEFQAIIKDP 90 (169)
Q Consensus 21 ~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~ 90 (169)
..||.|+....+..++.++.+.|++||..-+.-|.++|.+++++|||+++++ .+++....++++.+++..
T Consensus 179 R~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~ 258 (354)
T KOG0082|consen 179 RVPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNK 258 (354)
T ss_pred ccCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCc
Confidence 4678888889999999999999999999888999999999999999999984 235667778999999988
Q ss_pred CCCCCeEEEEEeCCCCCCC-----------------CCHhHHHh----hhC-CCCCCCceeEEEEeeeccCCCHHHHHHH
Q 030931 91 FMLNSVILVFANKQDMKGA-----------------MTPMEVCE----GLG-LFDLKNRKWHIQGTCALKGDGLYEGLDW 148 (169)
Q Consensus 91 ~~~~~piivv~nK~Dl~~~-----------------~~~~~~~~----~~~-~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 148 (169)
...+.+++++.||.|+... .+.++... .+. +.....+.+.+..++|.+..+|..+|+.
T Consensus 259 ~F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~a 338 (354)
T KOG0082|consen 259 WFANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDA 338 (354)
T ss_pred ccccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHH
Confidence 8889999999999998531 01111111 111 0011224556788899999999999999
Q ss_pred HHHHHHhhh
Q 030931 149 LASTLKEMR 157 (169)
Q Consensus 149 l~~~~~~~~ 157 (169)
+.+.+....
T Consensus 339 v~d~Ii~~n 347 (354)
T KOG0082|consen 339 VTDTIIQNN 347 (354)
T ss_pred HHHHHHHHH
Confidence 999887764
No 272
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=9.2e-12 Score=93.21 Aligned_cols=118 Identities=19% Similarity=0.191 Sum_probs=78.6
Q ss_pred eeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChh---hH---HHHHH--HHHHHhcCCCCC
Q 030931 22 LLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE---RI---GKAKQ--EFQAIIKDPFML 93 (169)
Q Consensus 22 ~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~---~~---~~~~~--~~~~~~~~~~~~ 93 (169)
.-|+...+..++.+.+.+.|.|+|||..|-...-.-..+||++|+|+|+.+.+ .| ...++ ++...+ .
T Consensus 70 GvTi~~~~~~fet~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl-----G 144 (428)
T COG5256 70 GVTIDVAHSKFETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL-----G 144 (428)
T ss_pred ceEEEEEEEEeecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc-----C
Confidence 44555666777778999999999999988877777788999999999997653 11 11111 122222 2
Q ss_pred CCeEEEEEeCCCCCCCCC--HhH----HHhhhCCCCCCCceeEEEEeeeccCCCHHH
Q 030931 94 NSVILVFANKQDMKGAMT--PME----VCEGLGLFDLKNRKWHIQGTCALKGDGLYE 144 (169)
Q Consensus 94 ~~piivv~nK~Dl~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 144 (169)
-..++++.||+|+.+-.. .++ +...+.........++|+++||.+|.|+.+
T Consensus 145 i~~lIVavNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 145 IKQLIVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred CceEEEEEEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 457999999999875211 122 222111111122357899999999999875
No 273
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.25 E-value=2.3e-11 Score=94.35 Aligned_cols=115 Identities=10% Similarity=0.022 Sum_probs=76.1
Q ss_pred EEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH--
Q 030931 37 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME-- 114 (169)
Q Consensus 37 ~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~-- 114 (169)
..+.+.|+|||+.|.......+..+|++++|+|+.+........+.+. ++... .-.|+++|.||+|+.+....++
T Consensus 117 ~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~-i~~~l--gi~~iIVvlNKiDlv~~~~~~~~~ 193 (460)
T PTZ00327 117 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLA-AVEIM--KLKHIIILQNKIDLVKEAQAQDQY 193 (460)
T ss_pred ceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHH-HHHHc--CCCcEEEEEecccccCHHHHHHHH
Confidence 478999999999987777777889999999999976311122222222 11111 2357899999999864322222
Q ss_pred --HHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhh
Q 030931 115 --VCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM 156 (169)
Q Consensus 115 --~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (169)
+.+.+... ....++++++||++|.|++.+++.|...+...
T Consensus 194 ~ei~~~l~~~--~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~ 235 (460)
T PTZ00327 194 EEIRNFVKGT--IADNAPIIPISAQLKYNIDVVLEYICTQIPIP 235 (460)
T ss_pred HHHHHHHHhh--ccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCC
Confidence 22211110 12356899999999999999999998766543
No 274
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.25 E-value=1.2e-11 Score=85.90 Aligned_cols=112 Identities=19% Similarity=0.097 Sum_probs=70.6
Q ss_pred chhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhh---CCCCCC
Q 030931 50 LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-PMEVCEGL---GLFDLK 125 (169)
Q Consensus 50 ~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~~---~~~~~~ 125 (169)
++.++..+++.+|++++|+|+++...- |...+... ..+.|+++|+||+|+.+... ........ ......
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLF--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHh--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcC
Confidence 577888899999999999999875311 11122111 14689999999999864322 12121111 000001
Q ss_pred CceeEEEEeeeccCCCHHHHHHHHHHHHHhhhc---cccccccccC
Q 030931 126 NRKWHIQGTCALKGDGLYEGLDWLASTLKEMRA---AGYSSVGTSS 168 (169)
Q Consensus 126 ~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~---~~~~~~~~~s 168 (169)
....+++++||++++|++++++++...+..... -+....|++|
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l~~~~~~~~~G~~nvGKSt 142 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLAKKGGDVYVVGATNVGKST 142 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhhcCCcEEEEcCCCCCHHH
Confidence 111248999999999999999999988754322 2455566665
No 275
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=8.4e-11 Score=88.72 Aligned_cols=143 Identities=13% Similarity=-0.011 Sum_probs=100.8
Q ss_pred CCCCceeeeec----------eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhH
Q 030931 7 PYCTSCTLVKF----------YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERI 76 (169)
Q Consensus 7 ~~~Ktsll~~f----------~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~ 76 (169)
.=|||||++.+ ..+...|+...+...+.++..+.+.|+||++++-...-..+...|.+++|+|.++--.-
T Consensus 10 dHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~~ 89 (447)
T COG3276 10 DHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMA 89 (447)
T ss_pred eccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcch
Confidence 35899999965 23556677788888888888999999999999887777777899999999999542211
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHH
Q 030931 77 GKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 154 (169)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 154 (169)
.. .+.+ .+++. ..-...++|+||+|..+....++..+...... .....+++.+|+++|+||+++.+.+...+.
T Consensus 90 qt-gEhL-~iLdl--lgi~~giivltk~D~~d~~r~e~~i~~Il~~l-~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 90 QT-GEHL-LILDL--LGIKNGIIVLTKADRVDEARIEQKIKQILADL-SLANAKIFKTSAKTGRGIEELKNELIDLLE 162 (447)
T ss_pred hh-HHHH-HHHHh--cCCCceEEEEeccccccHHHHHHHHHHHHhhc-ccccccccccccccCCCHHHHHHHHHHhhh
Confidence 11 1111 12221 12345799999999976544444433332221 134456899999999999999999999884
No 276
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=8.2e-12 Score=94.00 Aligned_cols=114 Identities=18% Similarity=0.166 Sum_probs=81.6
Q ss_pred ccCCCCCceeeeec-----------------------------eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhH
Q 030931 4 VKQPYCTSCTLVKF-----------------------------YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLW 54 (169)
Q Consensus 4 ~~~~~~Ktsll~~f-----------------------------~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~ 54 (169)
--+..|||||-.++ ..+..-++...+.++++.+..+++.|||||+.|..-.
T Consensus 19 SHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHeDFSEDT 98 (528)
T COG4108 19 SHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHEDFSEDT 98 (528)
T ss_pred ecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCccccchhH
Confidence 35789999998853 1222333445567788899999999999999999988
Q ss_pred HhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCC
Q 030931 55 RHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT---PMEVCEGLGLF 122 (169)
Q Consensus 55 ~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---~~~~~~~~~~~ 122 (169)
...+.-+|.+++|+|+...-.- ...+ +.+.+.++++||+-++||.|.....+ .+|+++.+++.
T Consensus 99 YRtLtAvDsAvMVIDaAKGiE~-qT~K----LfeVcrlR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~ 164 (528)
T COG4108 99 YRTLTAVDSAVMVIDAAKGIEP-QTLK----LFEVCRLRDIPIFTFINKLDREGRDPLELLDEIEEELGIQ 164 (528)
T ss_pred HHHHHhhheeeEEEecccCccH-HHHH----HHHHHhhcCCceEEEeeccccccCChHHHHHHHHHHhCcc
Confidence 8889999999999999642111 1222 22334557999999999999865433 35666666643
No 277
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.23 E-value=3.4e-11 Score=88.53 Aligned_cols=119 Identities=15% Similarity=0.125 Sum_probs=80.0
Q ss_pred eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHH--HHHHHhcCCCCCCCeE
Q 030931 20 LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQ--EFQAIIKDPFMLNSVI 97 (169)
Q Consensus 20 ~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~--~~~~~~~~~~~~~~pi 97 (169)
++.-|+.+-+..|...+.+|.|-|||||+.|......-...||+.|+++|+.. .-.++.+. ++..++. -..+
T Consensus 69 EQGITIDVAYRyFsT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~-Gvl~QTrRHs~I~sLLG-----Irhv 142 (431)
T COG2895 69 EQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARK-GVLEQTRRHSFIASLLG-----IRHV 142 (431)
T ss_pred hcCceEEEEeeecccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecch-hhHHHhHHHHHHHHHhC-----CcEE
Confidence 34556667777788899999999999999988777777888999999999832 11222221 2333332 3579
Q ss_pred EEEEeCCCCCCCCC--HhHHHhhhCCC--CCCCceeEEEEeeeccCCCHHH
Q 030931 98 LVFANKQDMKGAMT--PMEVCEGLGLF--DLKNRKWHIQGTCALKGDGLYE 144 (169)
Q Consensus 98 ivv~nK~Dl~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~gi~~ 144 (169)
+++.||+||.+-.. .+++...+... .+.-....++++||..|.|+-.
T Consensus 143 vvAVNKmDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 143 VVAVNKMDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred EEEEeeecccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence 99999999986432 12232222211 1122334799999999999754
No 278
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.22 E-value=1.4e-11 Score=100.72 Aligned_cols=102 Identities=13% Similarity=0.037 Sum_probs=71.6
Q ss_pred ccccCCCCCceeeeecee----------------e-------eeeeeeEEEE----EEEECCEEEEEEEcCCCCCchhhH
Q 030931 2 LRVKQPYCTSCTLVKFYL----------------L-------FLLLVRFNVE----KVQYKNVIFTVWDVGGQEKLRPLW 54 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~----------------~-------~~~t~~~~~~----~~~~~~~~~~i~D~~G~~~~~~~~ 54 (169)
+++..++|||||++++.. + +..|+..... .+++.++.+.+|||||+..|....
T Consensus 24 ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~f~~~~ 103 (720)
T TIGR00490 24 IVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVDFGGDV 103 (720)
T ss_pred EEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCccccHHHH
Confidence 466889999999998621 1 2224443222 245678999999999999998888
Q ss_pred HhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030931 55 RHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG 108 (169)
Q Consensus 55 ~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 108 (169)
...++.+|++++|+|+.+........ .+....+ .+.|+++++||+|...
T Consensus 104 ~~al~~aD~~llVvda~~g~~~~t~~-~~~~~~~----~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 104 TRAMRAVDGAIVVVCAVEGVMPQTET-VLRQALK----ENVKPVLFINKVDRLI 152 (720)
T ss_pred HHHHHhcCEEEEEEecCCCCCccHHH-HHHHHHH----cCCCEEEEEEChhccc
Confidence 88999999999999997632222222 2222212 3568889999999853
No 279
>PRK12289 GTPase RsgA; Reviewed
Probab=99.22 E-value=1.8e-11 Score=92.00 Aligned_cols=105 Identities=20% Similarity=0.139 Sum_probs=72.1
Q ss_pred HHhhccCCCEEEEEEECCChh-hHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEE
Q 030931 54 WRHYFNNTDGLIYVVDSLDRE-RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQ 132 (169)
Q Consensus 54 ~~~~~~~~~~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (169)
....++++|++++|+|+.++. ....+..|+.... ..++|+++|+||+|+.+........+.+ ...+++++
T Consensus 83 ~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~----~~~ip~ILVlNK~DLv~~~~~~~~~~~~-----~~~g~~v~ 153 (352)
T PRK12289 83 DRPPVANADQILLVFALAEPPLDPWQLSRFLVKAE----STGLEIVLCLNKADLVSPTEQQQWQDRL-----QQWGYQPL 153 (352)
T ss_pred echhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH----HCCCCEEEEEEchhcCChHHHHHHHHHH-----HhcCCeEE
Confidence 344578999999999998764 4445566666552 2478999999999996432122222222 23345789
Q ss_pred EeeeccCCCHHHHHHHHHHHHHhhhccccccccccCC
Q 030931 133 GTCALKGDGLYEGLDWLASTLKEMRAAGYSSVGTSSF 169 (169)
Q Consensus 133 ~~Sa~~~~gi~~~~~~l~~~~~~~~~~~~~~~~~~s~ 169 (169)
++||+++.|++++++.+...+ .-..+.++.|+||+
T Consensus 154 ~iSA~tg~GI~eL~~~L~~ki--~v~iG~SgVGKSSL 188 (352)
T PRK12289 154 FISVETGIGLEALLEQLRNKI--TVVAGPSGVGKSSL 188 (352)
T ss_pred EEEcCCCCCHHHHhhhhccce--EEEEeCCCCCHHHH
Confidence 999999999999999887543 23345677777763
No 280
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.20 E-value=2.9e-11 Score=88.42 Aligned_cols=102 Identities=13% Similarity=0.134 Sum_probs=61.5
Q ss_pred CccccCCCCCceeeeeceee---------------eeeeeeEEEEE--EEECC--EEEEEEEcCCCCCchh---hH----
Q 030931 1 MLRVKQPYCTSCTLVKFYLL---------------FLLLVRFNVEK--VQYKN--VIFTVWDVGGQEKLRP---LW---- 54 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f~~~---------------~~~t~~~~~~~--~~~~~--~~~~i~D~~G~~~~~~---~~---- 54 (169)
||.+..|+|||||++++... ..+|..+.... +...+ +++.+|||||-..... .|
T Consensus 8 ~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~~i~ 87 (276)
T cd01850 8 MVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWKPIV 87 (276)
T ss_pred EEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhHHHHH
Confidence 57789999999999976111 34455544433 33333 6799999999433211 01
Q ss_pred -------------------Hhhcc--CCCEEEEEEECCChhhHHHH-HHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030931 55 -------------------RHYFN--NTDGLIYVVDSLDRERIGKA-KQEFQAIIKDPFMLNSVILVFANKQDMKG 108 (169)
Q Consensus 55 -------------------~~~~~--~~~~ii~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 108 (169)
...+. .+|+++++++.+... .... .+.++.+. ...|+++|+||+|+..
T Consensus 88 ~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D~~~lk~l~-----~~v~vi~VinK~D~l~ 157 (276)
T cd01850 88 DYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLDIEFMKRLS-----KRVNIIPVIAKADTLT 157 (276)
T ss_pred HHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHHHHHHHHHh-----ccCCEEEEEECCCcCC
Confidence 01222 467888888876422 1111 23333332 2589999999999854
No 281
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.16 E-value=8.8e-11 Score=78.95 Aligned_cols=95 Identities=16% Similarity=0.122 Sum_probs=62.8
Q ss_pred hhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeE
Q 030931 51 RPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWH 130 (169)
Q Consensus 51 ~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 130 (169)
+.+..++++++|++++|+|++++..... .. +...+.. .+.|+++|+||+|+.+.....+... + ....+.+
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~-l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~-~----~~~~~~~ 72 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRS-RK-LERYVLE---LGKKLLIVLNKADLVPKEVLEKWKS-I----KESEGIP 72 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCC-HH-HHHHHHh---CCCcEEEEEEhHHhCCHHHHHHHHH-H----HHhCCCc
Confidence 4567788889999999999976543221 11 2222221 3689999999999853211111111 1 0112346
Q ss_pred EEEeeeccCCCHHHHHHHHHHHHHh
Q 030931 131 IQGTCALKGDGLYEGLDWLASTLKE 155 (169)
Q Consensus 131 ~~~~Sa~~~~gi~~~~~~l~~~~~~ 155 (169)
++++||+++.|++++++.+.+.+..
T Consensus 73 ~~~iSa~~~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 73 VVYVSAKERLGTKILRRTIKELAKI 97 (156)
T ss_pred EEEEEccccccHHHHHHHHHHHHhh
Confidence 8999999999999999999987754
No 282
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.16 E-value=1.2e-11 Score=79.65 Aligned_cols=105 Identities=10% Similarity=0.017 Sum_probs=73.0
Q ss_pred ccccCCCCCceeeeeceeeee------eeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhh
Q 030931 2 LRVKQPYCTSCTLVKFYLLFL------LLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRER 75 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~------~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~ 75 (169)
+++..|+|||+|+.||..... +|++ +......+.+.+++++.||+.++.++
T Consensus 5 ~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~-----------------------~~~~~~~~~~s~~~~~~v~~~~~~~s 61 (124)
T smart00010 5 GIGDSGVGKVGKSARFVQFPFDYVPTVFTIG-----------------------IDVYDPTSYESFDVVLQCWRVDDRDS 61 (124)
T ss_pred EECCCChhHHHHHHHHhcCCccccCceehhh-----------------------hhhccccccCCCCEEEEEEEccCHHH
Confidence 578999999999998833222 2332 33344567788999999999999988
Q ss_pred HHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHH
Q 030931 76 IGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLY 143 (169)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 143 (169)
++.. |...++... ..+.|.++++||.|+.+.. ++.... ..+++++|++++.|+.
T Consensus 62 ~~~~--~~~~i~~~~-k~dl~~~~~~nk~dl~~~~---~~~~~~--------~~~~~~~s~~~~~~~~ 115 (124)
T smart00010 62 ADNK--NVPEVLVGN-KSDLPILVGGNRDVLEEER---QVATEE--------GLEFAETSAKTPEEGE 115 (124)
T ss_pred HHHH--hHHHHHhcC-CCCCcEEEEeechhhHhhC---cCCHHH--------HHHHHHHhCCCcchhh
Confidence 8765 766665433 3578999999999984321 111111 1237899999999984
No 283
>PRK13768 GTPase; Provisional
Probab=99.15 E-value=6.8e-11 Score=85.53 Aligned_cols=116 Identities=15% Similarity=0.101 Sum_probs=72.9
Q ss_pred EEEEEEEcCCCCCc---hhhHHhhcc---C--CCEEEEEEECCChhhHHHHH--HHHHHHhcCCCCCCCeEEEEEeCCCC
Q 030931 37 VIFTVWDVGGQEKL---RPLWRHYFN---N--TDGLIYVVDSLDRERIGKAK--QEFQAIIKDPFMLNSVILVFANKQDM 106 (169)
Q Consensus 37 ~~~~i~D~~G~~~~---~~~~~~~~~---~--~~~ii~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~piivv~nK~Dl 106 (169)
..+.+||+||+... +..++.+++ . ++++++++|.....+..+.. .|+...... ..+.|+++|+||+|+
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~--~~~~~~i~v~nK~D~ 174 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL--RLGLPQIPVLNKADL 174 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH--HcCCCEEEEEEhHhh
Confidence 36899999998763 333433333 2 89999999996544333222 222211111 137899999999998
Q ss_pred CCCCCHhHHHhhhCC--------CC---------------CCC--ceeEEEEeeeccCCCHHHHHHHHHHHHH
Q 030931 107 KGAMTPMEVCEGLGL--------FD---------------LKN--RKWHIQGTCALKGDGLYEGLDWLASTLK 154 (169)
Q Consensus 107 ~~~~~~~~~~~~~~~--------~~---------------~~~--~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 154 (169)
.+....++..+.+.. .. ... ...+++++||++++|++++.+++.+.+.
T Consensus 175 ~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 175 LSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred cCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 765443333332221 00 011 1246899999999999999999988764
No 284
>PRK09866 hypothetical protein; Provisional
Probab=99.13 E-value=1.2e-09 Score=86.70 Aligned_cols=127 Identities=13% Similarity=0.045 Sum_probs=78.9
Q ss_pred eeeeeEEEEEEEE---CCEEEEEEEcCCCCCc-----hhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCC
Q 030931 22 LLLVRFNVEKVQY---KNVIFTVWDVGGQEKL-----RPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFML 93 (169)
Q Consensus 22 ~~t~~~~~~~~~~---~~~~~~i~D~~G~~~~-----~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 93 (169)
.|-+.+.+.++.. ....+.+.||||-..- .......+..+|+++||+|..+..+..+. ... +.++.. ..
T Consensus 212 ~p~iev~f~hl~g~l~~~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De-eIl-k~Lkk~-~K 288 (741)
T PRK09866 212 IPVIEVEFVHLAGLESYPGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE-EVR-EAILAV-GQ 288 (741)
T ss_pred CceeeeeeeeccccccccCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH-HHH-HHHHhc-CC
Confidence 3555666666543 3567899999997542 22334578999999999999764333321 122 222211 11
Q ss_pred CCeEEEEEeCCCCCCCCC--HhHHHhhhCCC--CCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931 94 NSVILVFANKQDMKGAMT--PMEVCEGLGLF--DLKNRKWHIQGTCALKGDGLYEGLDWLAS 151 (169)
Q Consensus 94 ~~piivv~nK~Dl~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (169)
..|+++|+||+|+.+... .+.+....... ........++++||++|.|++++++.+..
T Consensus 289 ~~PVILVVNKIDl~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 289 SVPLYVLVNKFDQQDRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred CCCEEEEEEcccCCCcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 359999999999864222 33333322100 00111235999999999999999999886
No 285
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.13 E-value=1.2e-10 Score=81.10 Aligned_cols=107 Identities=22% Similarity=0.320 Sum_probs=79.8
Q ss_pred ccccCCCCCceeeee-c-------eeeeeeeeeEEEEEEEE-CCEEEEEEEcCCCCCch-----hhHHhhccCCCEEEEE
Q 030931 2 LRVKQPYCTSCTLVK-F-------YLLFLLLVRFNVEKVQY-KNVIFTVWDVGGQEKLR-----PLWRHYFNNTDGLIYV 67 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~-f-------~~~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~~-----~~~~~~~~~~~~ii~v 67 (169)
|.++.||||||+=-- | .....+|+.+...++.+ |...+++||.+||+.+- ......++..+++++|
T Consensus 9 LMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~v 88 (295)
T KOG3886|consen 9 LMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYV 88 (295)
T ss_pred EeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheeheeeeee
Confidence 567999999998652 2 45567888888888888 77999999999998542 2445678999999999
Q ss_pred EECCChhhHHHH---HHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030931 68 VDSLDRERIGKA---KQEFQAIIKDPFMLNSVILVFANKQDMKGAM 110 (169)
Q Consensus 68 ~d~~~~~~~~~~---~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~ 110 (169)
||++..+--.++ .+-++.+++. .+...++....|+|+....
T Consensus 89 FDves~e~~~D~~~yqk~Le~ll~~--SP~AkiF~l~hKmDLv~~d 132 (295)
T KOG3886|consen 89 FDVESREMEKDFHYYQKCLEALLQN--SPEAKIFCLLHKMDLVQED 132 (295)
T ss_pred eeccchhhhhhHHHHHHHHHHHHhc--CCcceEEEEEeechhcccc
Confidence 999776433332 3334455543 3678899999999997543
No 286
>PRK12288 GTPase RsgA; Reviewed
Probab=99.10 E-value=1.9e-10 Score=86.50 Aligned_cols=104 Identities=24% Similarity=0.216 Sum_probs=73.3
Q ss_pred ccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeec
Q 030931 58 FNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCAL 137 (169)
Q Consensus 58 ~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 137 (169)
..++|.+++|++..+..++..+..|+.... ..++|+++|+||+|+.+......+...... ....+++++++||+
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~----~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~--y~~~g~~v~~vSA~ 191 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACE----TLGIEPLIVLNKIDLLDDEGRAFVNEQLDI--YRNIGYRVLMVSSH 191 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHH----hcCCCEEEEEECccCCCcHHHHHHHHHHHH--HHhCCCeEEEEeCC
Confidence 456999999999988888999888877542 246899999999999643221122221110 12334679999999
Q ss_pred cCCCHHHHHHHHHHHHHhhhccccccccccCC
Q 030931 138 KGDGLYEGLDWLASTLKEMRAAGYSSVGTSSF 169 (169)
Q Consensus 138 ~~~gi~~~~~~l~~~~~~~~~~~~~~~~~~s~ 169 (169)
+++|++++++++...+ .-..+.++.|+||+
T Consensus 192 tg~GideL~~~L~~ki--~~~vG~sgVGKSTL 221 (347)
T PRK12288 192 TGEGLEELEAALTGRI--SIFVGQSGVGKSSL 221 (347)
T ss_pred CCcCHHHHHHHHhhCC--EEEECCCCCCHHHH
Confidence 9999999999987543 23346777777763
No 287
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.10 E-value=3.1e-11 Score=86.37 Aligned_cols=112 Identities=14% Similarity=0.075 Sum_probs=58.6
Q ss_pred EEEEEEcCCCCCchhhHHhhc--------cCCCEEEEEEECCChh---hHHHHHH-HHHHHhcCCCCCCCeEEEEEeCCC
Q 030931 38 IFTVWDVGGQEKLRPLWRHYF--------NNTDGLIYVVDSLDRE---RIGKAKQ-EFQAIIKDPFMLNSVILVFANKQD 105 (169)
Q Consensus 38 ~~~i~D~~G~~~~~~~~~~~~--------~~~~~ii~v~d~~~~~---~~~~~~~-~~~~~~~~~~~~~~piivv~nK~D 105 (169)
.+.++|||||.++...|...- ...-++++++|..... .|-...- -+.-+++ -+.|.+.|.||+|
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~----~~lP~vnvlsK~D 167 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLR----LELPHVNVLSKID 167 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHH----HTSEEEEEE--GG
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhh----CCCCEEEeeeccC
Confidence 699999999988766655433 4567889999986433 3322211 1111211 3789999999999
Q ss_pred CCCCC---------C-----------HhHHHhhhCCCCCCCcee-EEEEeeeccCCCHHHHHHHHHHHH
Q 030931 106 MKGAM---------T-----------PMEVCEGLGLFDLKNRKW-HIQGTCALKGDGLYEGLDWLASTL 153 (169)
Q Consensus 106 l~~~~---------~-----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~~l~~~~ 153 (169)
+.+.. + ...+...+.......... .+++.|+.+++|+.+++..+-+++
T Consensus 168 l~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 168 LLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp GS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred cccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 97511 0 011111111111112223 699999999999999998887654
No 288
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=99.09 E-value=2.9e-10 Score=87.22 Aligned_cols=132 Identities=21% Similarity=0.359 Sum_probs=96.6
Q ss_pred eeeeeeEEEEEEEE-CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC----------hhhHHHHHHHHHHHhcC
Q 030931 21 FLLLVRFNVEKVQY-KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD----------RERIGKAKQEFQAIIKD 89 (169)
Q Consensus 21 ~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~~~~~~~~~~~~~~~~ 89 (169)
..+|.|+....+.+ ++..+.++|++|+..-+..|.+++.+++++|||+++++ ..++.+...++..+...
T Consensus 219 r~~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~ 298 (389)
T PF00503_consen 219 RVKTTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNN 298 (389)
T ss_dssp ----SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTS
T ss_pred cCCCCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhC
Confidence 35778888889999 99999999999999889999999999999999999873 24577778889999988
Q ss_pred CCCCCCeEEEEEeCCCCCC------C--------------CCHhHHHh----hhCCCCCCC---ceeEEEEeeeccCCCH
Q 030931 90 PFMLNSVILVFANKQDMKG------A--------------MTPMEVCE----GLGLFDLKN---RKWHIQGTCALKGDGL 142 (169)
Q Consensus 90 ~~~~~~piivv~nK~Dl~~------~--------------~~~~~~~~----~~~~~~~~~---~~~~~~~~Sa~~~~gi 142 (169)
....+.|++|++||.|+.. . .+.+.+.+ .+....... +.+.+..|+|.+..++
T Consensus 299 ~~~~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~ 378 (389)
T PF00503_consen 299 PWFKNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENI 378 (389)
T ss_dssp GGGTTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHH
T ss_pred cccccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHH
Confidence 8788999999999999621 1 11111111 111111111 5567788999999999
Q ss_pred HHHHHHHHHH
Q 030931 143 YEGLDWLAST 152 (169)
Q Consensus 143 ~~~~~~l~~~ 152 (169)
..+|+.+.+.
T Consensus 379 ~~v~~~v~~~ 388 (389)
T PF00503_consen 379 RKVFNAVKDI 388 (389)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhcCc
Confidence 9999888764
No 289
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.06 E-value=3e-10 Score=83.62 Aligned_cols=103 Identities=20% Similarity=0.152 Sum_probs=69.6
Q ss_pred HhhccCCCEEEEEEECCChh-hHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEE
Q 030931 55 RHYFNNTDGLIYVVDSLDRE-RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQG 133 (169)
Q Consensus 55 ~~~~~~~~~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (169)
...++++|.+++|+|+.++. ++..+..|+..+.. .++|+++|+||+|+.+.. +...... .....++++++
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~--~~~~~~~---~~~~~g~~v~~ 143 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDE--EEELELV---EALALGYPVLA 143 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChH--HHHHHHH---HHHhCCCeEEE
Confidence 34588999999999998887 77888888776532 368999999999996431 1111100 01123467999
Q ss_pred eeeccCCCHHHHHHHHHHHHHhhhccccccccccC
Q 030931 134 TCALKGDGLYEGLDWLASTLKEMRAAGYSSVGTSS 168 (169)
Q Consensus 134 ~Sa~~~~gi~~~~~~l~~~~~~~~~~~~~~~~~~s 168 (169)
+||+++.|+++++..+.... .--.+....|++|
T Consensus 144 vSA~~g~gi~~L~~~L~~k~--~~~~G~sg~GKST 176 (287)
T cd01854 144 VSAKTGEGLDELREYLKGKT--SVLVGQSGVGKST 176 (287)
T ss_pred EECCCCccHHHHHhhhccce--EEEECCCCCCHHH
Confidence 99999999999988876411 1122455555554
No 290
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.06 E-value=2.4e-10 Score=72.16 Aligned_cols=133 Identities=18% Similarity=0.128 Sum_probs=84.3
Q ss_pred CccccCCCCCceeeeeceee---eeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhH----HhhccCCCEEEEEEECCCh
Q 030931 1 MLRVKQPYCTSCTLVKFYLL---FLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLW----RHYFNNTDGLIYVVDSLDR 73 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f~~~---~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~----~~~~~~~~~ii~v~d~~~~ 73 (169)
|+.+..|+|||+|.+.+... |.-|..+ ++.. =-..||||..--...| -.....++.+++|-.++++
T Consensus 5 ~~vG~~gcGKTtL~q~L~G~~~lykKTQAv-----e~~d--~~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~ 77 (148)
T COG4917 5 AFVGQVGCGKTTLFQSLYGNDTLYKKTQAV-----EFND--KGDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDP 77 (148)
T ss_pred EEecccccCchhHHHHhhcchhhhccccee-----eccC--ccccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCc
Confidence 45667899999999987433 3333332 2211 0146999965333333 2235689999999998876
Q ss_pred hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHH
Q 030931 74 ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAST 152 (169)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 152 (169)
++.-.- .++ .....|+|-+.+|.|+.+..+..-+...+... . .-++|++|+.++.|++++++.+...
T Consensus 78 ~s~f~p-----~f~---~~~~k~vIgvVTK~DLaed~dI~~~~~~L~ea--G--a~~IF~~s~~d~~gv~~l~~~L~~~ 144 (148)
T COG4917 78 ESRFPP-----GFL---DIGVKKVIGVVTKADLAEDADISLVKRWLREA--G--AEPIFETSAVDNQGVEELVDYLASL 144 (148)
T ss_pred cccCCc-----ccc---cccccceEEEEecccccchHhHHHHHHHHHHc--C--CcceEEEeccCcccHHHHHHHHHhh
Confidence 432111 111 11256799999999998644443333333221 1 2359999999999999999988753
No 291
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.06 E-value=4.7e-10 Score=92.14 Aligned_cols=101 Identities=13% Similarity=0.084 Sum_probs=67.5
Q ss_pred ccccCCCCCceeeeeceee-----------------------eeeeeeEEEEEEEE----CCEEEEEEEcCCCCCchhhH
Q 030931 2 LRVKQPYCTSCTLVKFYLL-----------------------FLLLVRFNVEKVQY----KNVIFTVWDVGGQEKLRPLW 54 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~-----------------------~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~ 54 (169)
+++-.++|||||+.++-.. ..-|+......+.+ +++.+++.||||+..|....
T Consensus 25 iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~df~~~~ 104 (731)
T PRK07560 25 IIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVDFGGDV 104 (731)
T ss_pred EEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccChHHHH
Confidence 3556789999999976110 00111122222333 57889999999999998888
Q ss_pred HhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030931 55 RHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 107 (169)
Q Consensus 55 ~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 107 (169)
...++.+|++++|+|+....... ....+....+ .+.|+++++||+|+.
T Consensus 105 ~~~l~~~D~avlVvda~~g~~~~-t~~~~~~~~~----~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 105 TRAMRAVDGAIVVVDAVEGVMPQ-TETVLRQALR----ERVKPVLFINKVDRL 152 (731)
T ss_pred HHHHHhcCEEEEEEECCCCCCcc-HHHHHHHHHH----cCCCeEEEEECchhh
Confidence 88999999999999987643222 2222333222 246789999999975
No 292
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.03 E-value=1.6e-09 Score=80.81 Aligned_cols=111 Identities=15% Similarity=0.115 Sum_probs=70.4
Q ss_pred CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---
Q 030931 35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--- 111 (169)
Q Consensus 35 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--- 111 (169)
.++.+.|.||+|...-. ......||.+++|.+....+.+.... ..++ ...-++|+||+|+.+...
T Consensus 147 ~g~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~p~~gd~iq~~k---~gi~------E~aDIiVVNKaDl~~~~~a~~ 214 (332)
T PRK09435 147 AGYDVILVETVGVGQSE---TAVAGMVDFFLLLQLPGAGDELQGIK---KGIM------ELADLIVINKADGDNKTAARR 214 (332)
T ss_pred cCCCEEEEECCCCccch---hHHHHhCCEEEEEecCCchHHHHHHH---hhhh------hhhheEEeehhcccchhHHHH
Confidence 36889999999976322 22566799999997644443333322 1122 222389999999865432
Q ss_pred -HhHHHhhhCCCCCC--CceeEEEEeeeccCCCHHHHHHHHHHHHHhhh
Q 030931 112 -PMEVCEGLGLFDLK--NRKWHIQGTCALKGDGLYEGLDWLASTLKEMR 157 (169)
Q Consensus 112 -~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 157 (169)
..++...+...... ....+++.+||+++.|++++++.+.+.+....
T Consensus 215 ~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l~ 263 (332)
T PRK09435 215 AAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAALT 263 (332)
T ss_pred HHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 22333333321111 12246999999999999999999998766433
No 293
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.02 E-value=5.4e-10 Score=92.94 Aligned_cols=67 Identities=16% Similarity=0.184 Sum_probs=52.5
Q ss_pred CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030931 36 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 107 (169)
Q Consensus 36 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 107 (169)
++.++++|||||..|.......++.+|++|+|+|+.+.-.... ...+..+.. .++|+++++||+|+.
T Consensus 97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t-~~~~~~~~~----~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALG----ERIRPVLTVNKMDRC 163 (843)
T ss_pred ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccH-HHHHHHHHH----CCCCEEEEEECCccc
Confidence 6889999999999999888888999999999999976433222 222333322 378999999999986
No 294
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.02 E-value=1.4e-10 Score=87.90 Aligned_cols=114 Identities=23% Similarity=0.230 Sum_probs=71.4
Q ss_pred CCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC-CCHhHHHhhhCCCCCC
Q 030931 47 QEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA-MTPMEVCEGLGLFDLK 125 (169)
Q Consensus 47 ~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~-~~~~~~~~~~~~~~~~ 125 (169)
.+.|..+...+.+.++++++|+|+.+.. ..|..++.+.. .+.|+++|+||+|+... ...+++.+.+. ...+
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~--~~~piilV~NK~DLl~k~~~~~~~~~~l~-~~~k 121 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV--GGNPVLLVGNKIDLLPKSVNLSKIKEWMK-KRAK 121 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh--CCCCEEEEEEchhhCCCCCCHHHHHHHHH-HHHH
Confidence 4567888888889999999999997653 12222332211 26799999999998643 22223222110 0011
Q ss_pred Ccee---EEEEeeeccCCCHHHHHHHHHHHHHhh--hccccccccccC
Q 030931 126 NRKW---HIQGTCALKGDGLYEGLDWLASTLKEM--RAAGYSSVGTSS 168 (169)
Q Consensus 126 ~~~~---~~~~~Sa~~~~gi~~~~~~l~~~~~~~--~~~~~~~~~~~s 168 (169)
..++ .++++||++|.|++++++.+.+..... ---+.+..|+||
T Consensus 122 ~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~~~~~~v~~vG~~nvGKSt 169 (360)
T TIGR03597 122 ELGLKPVDIILVSAKKGNGIDELLDKIKKARNKKDVYVVGVTNVGKSS 169 (360)
T ss_pred HcCCCcCcEEEecCCCCCCHHHHHHHHHHHhCCCeEEEECCCCCCHHH
Confidence 1222 489999999999999999987653221 123455667666
No 295
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.01 E-value=1e-09 Score=78.52 Aligned_cols=151 Identities=17% Similarity=0.159 Sum_probs=93.2
Q ss_pred ccccCCCCCceeeeece---eeeeeeeeEEE-----EEEEECCEEEEEEEcCCCCC-------chhhHHhhccCCCEEEE
Q 030931 2 LRVKQPYCTSCTLVKFY---LLFLLLVRFNV-----EKVQYKNVIFTVWDVGGQEK-------LRPLWRHYFNNTDGLIY 66 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~---~~~~~t~~~~~-----~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~~~~ii~ 66 (169)
|-++.|+|||||+|.+. .....-++... ....++...+.+||+||-+. ++.....++...|.+++
T Consensus 44 i~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~ 123 (296)
T COG3596 44 LMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLW 123 (296)
T ss_pred EecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEE
Confidence 34699999999999863 22222223211 12334668899999999665 45556678889999999
Q ss_pred EEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC----------C--HhHHHhhhCCCCC---CCceeEE
Q 030931 67 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM----------T--PMEVCEGLGLFDL---KNRKWHI 131 (169)
Q Consensus 67 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~----------~--~~~~~~~~~~~~~---~~~~~~~ 131 (169)
+.|..|+.-=-+ ..++.++.... -+.|++++.|.+|...+. + .++..+.. .+.. -..--++
T Consensus 124 l~~~~draL~~d-~~f~~dVi~~~--~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k-~~~~~~~~q~V~pV 199 (296)
T COG3596 124 LIKADDRALGTD-EDFLRDVIILG--LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEK-AEALGRLFQEVKPV 199 (296)
T ss_pred eccCCCccccCC-HHHHHHHHHhc--cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHH-HHHHHHHHhhcCCe
Confidence 999977531101 12334443322 358999999999975331 1 01111000 0000 0111257
Q ss_pred EEeeeccCCCHHHHHHHHHHHHHhh
Q 030931 132 QGTCALKGDGLYEGLDWLASTLKEM 156 (169)
Q Consensus 132 ~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (169)
+..|+..++|++++...++..+...
T Consensus 200 ~~~~~r~~wgl~~l~~ali~~lp~e 224 (296)
T COG3596 200 VAVSGRLPWGLKELVRALITALPVE 224 (296)
T ss_pred EEeccccCccHHHHHHHHHHhCccc
Confidence 8888999999999999999887754
No 296
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.00 E-value=1.5e-09 Score=80.44 Aligned_cols=107 Identities=16% Similarity=0.071 Sum_probs=65.7
Q ss_pred CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHH
Q 030931 36 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEV 115 (169)
Q Consensus 36 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~ 115 (169)
++.+.|.||+|... ........+|.++++.+.. +-+++......+ .++|.++++||+|+.........
T Consensus 126 g~D~viidT~G~~~---~e~~i~~~aD~i~vv~~~~---~~~el~~~~~~l------~~~~~ivv~NK~Dl~~~~~~~~~ 193 (300)
T TIGR00750 126 GYDVIIVETVGVGQ---SEVDIANMADTFVVVTIPG---TGDDLQGIKAGL------MEIADIYVVNKADGEGATNVTIA 193 (300)
T ss_pred CCCEEEEeCCCCch---hhhHHHHhhceEEEEecCC---ccHHHHHHHHHH------hhhccEEEEEcccccchhHHHHH
Confidence 67889999998531 2223566788888885443 223333333333 25678999999998754322111
Q ss_pred Hhhh--CCCCC-C---CceeEEEEeeeccCCCHHHHHHHHHHHHH
Q 030931 116 CEGL--GLFDL-K---NRKWHIQGTCALKGDGLYEGLDWLASTLK 154 (169)
Q Consensus 116 ~~~~--~~~~~-~---~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 154 (169)
...+ ..... . ....+++++||+++.|++++++++.+...
T Consensus 194 ~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 194 RLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 1111 00000 1 11235899999999999999999998644
No 297
>PTZ00416 elongation factor 2; Provisional
Probab=99.00 E-value=7.6e-10 Score=91.98 Aligned_cols=67 Identities=18% Similarity=0.242 Sum_probs=52.4
Q ss_pred CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030931 36 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 107 (169)
Q Consensus 36 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 107 (169)
++.+.+.||||+..|.......++.+|++|+|+|+.+.-.... ...+..+.+ .++|+++++||+|+.
T Consensus 91 ~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~~----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 91 PFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQALQ----ERIRPVLFINKVDRA 157 (836)
T ss_pred ceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHHHH----cCCCEEEEEEChhhh
Confidence 6789999999999998888888999999999999976433222 233334322 358999999999986
No 298
>PRK00098 GTPase RsgA; Reviewed
Probab=98.98 E-value=3.4e-10 Score=83.77 Aligned_cols=102 Identities=22% Similarity=0.163 Sum_probs=65.4
Q ss_pred hccCCCEEEEEEECCChhhHHH-HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEee
Q 030931 57 YFNNTDGLIYVVDSLDRERIGK-AKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTC 135 (169)
Q Consensus 57 ~~~~~~~ii~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 135 (169)
..+++|++++|+|+.++..... +..|+..+.. .++|+++|+||+|+.+. ......... .....+++++++|
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~----~~ip~iIVlNK~DL~~~--~~~~~~~~~--~~~~~g~~v~~vS 148 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA----NGIKPIIVLNKIDLLDD--LEEARELLA--LYRAIGYDVLELS 148 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEEhHHcCCC--HHHHHHHHH--HHHHCCCeEEEEe
Confidence 3589999999999987755443 4566655422 47899999999999532 121111111 0122346799999
Q ss_pred eccCCCHHHHHHHHHHHHHhhhccccccccccC
Q 030931 136 ALKGDGLYEGLDWLASTLKEMRAAGYSSVGTSS 168 (169)
Q Consensus 136 a~~~~gi~~~~~~l~~~~~~~~~~~~~~~~~~s 168 (169)
|+++.|++++++.+...+. -..+.++.|++|
T Consensus 149 A~~g~gi~~L~~~l~gk~~--~~~G~sgvGKSt 179 (298)
T PRK00098 149 AKEGEGLDELKPLLAGKVT--VLAGQSGVGKST 179 (298)
T ss_pred CCCCccHHHHHhhccCceE--EEECCCCCCHHH
Confidence 9999999999988742211 122455566555
No 299
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.98 E-value=2.2e-09 Score=72.20 Aligned_cols=88 Identities=14% Similarity=0.037 Sum_probs=57.1
Q ss_pred hccCCCEEEEEEECCChhh--HHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEe
Q 030931 57 YFNNTDGLIYVVDSLDRER--IGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGT 134 (169)
Q Consensus 57 ~~~~~~~ii~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (169)
.++.+|.+++|+|+.++.. ...+..++.. . ..+.|+++|+||+|+.+.....+....+. +......+.+
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~----~-~~~~p~ilVlNKiDl~~~~~~~~~~~~~~----~~~~~~~~~i 75 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRCKHVEEYLKK----E-KPHKHLIFVLNKCDLVPTWVTARWVKILS----KEYPTIAFHA 75 (157)
T ss_pred hhhhCCEEEEEEECCCCccccCHHHHHHHHh----c-cCCCCEEEEEEchhcCCHHHHHHHHHHHh----cCCcEEEEEe
Confidence 4678999999999987532 2222323322 1 23589999999999954321222222222 1122336889
Q ss_pred eeccCCCHHHHHHHHHHHH
Q 030931 135 CALKGDGLYEGLDWLASTL 153 (169)
Q Consensus 135 Sa~~~~gi~~~~~~l~~~~ 153 (169)
||+++.|++++++.+...+
T Consensus 76 Sa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 76 SINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred eccccccHHHHHHHHHHHH
Confidence 9999999999999997764
No 300
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.96 E-value=3.1e-09 Score=82.32 Aligned_cols=149 Identities=10% Similarity=0.137 Sum_probs=104.2
Q ss_pred ccccCCCCCceeeeec-eeee----eeeee-EEEE-EEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChh
Q 030931 2 LRVKQPYCTSCTLVKF-YLLF----LLLVR-FNVE-KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE 74 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-~~~~----~~t~~-~~~~-~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 74 (169)
+.+..+||||+|++|| +..| .|.-| +... .++...+-+.+.|.+|.. -..|..++|++||||.+.+.+
T Consensus 35 ivg~~~sgktalvhr~ltgty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdavIfvf~~~d~~ 109 (749)
T KOG0705|consen 35 IVGTSQSGKTALVHRYLTGTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAVVFVFSVEDEQ 109 (749)
T ss_pred eeecccCCceeeeeeeccceeccccCCcCccceeeEEeeccceEeeeecccCCc-----hhhhhhhccceEEEEEecccc
Confidence 3568899999999997 3333 33333 2222 245577888889988753 355778899999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH--hHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHH
Q 030931 75 RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP--MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAST 152 (169)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 152 (169)
+|+.+..+...+........+|+++++++.-.....+. .+..... ...+...+.||++++.+|.++..+|..++..
T Consensus 110 s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~--l~~~~krcsy~et~atyGlnv~rvf~~~~~k 187 (749)
T KOG0705|consen 110 SFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQ--LSAQMKRCSYYETCATYGLNVERVFQEVAQK 187 (749)
T ss_pred CHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHH--HHHhcCccceeecchhhhhhHHHHHHHHHHH
Confidence 99999888777765555568999999988755332211 1111111 1123445669999999999999999999987
Q ss_pred HHhhh
Q 030931 153 LKEMR 157 (169)
Q Consensus 153 ~~~~~ 157 (169)
+....
T Consensus 188 ~i~~~ 192 (749)
T KOG0705|consen 188 IVQLR 192 (749)
T ss_pred HHHHH
Confidence 76653
No 301
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.95 E-value=8.3e-09 Score=75.93 Aligned_cols=105 Identities=11% Similarity=0.016 Sum_probs=62.4
Q ss_pred CccccCCCCCceeeeeceeee------eeeee--EEEEEEEECCEEEEEEEcCCCCCchhhHH---hhc------cCCCE
Q 030931 1 MLRVKQPYCTSCTLVKFYLLF------LLLVR--FNVEKVQYKNVIFTVWDVGGQEKLRPLWR---HYF------NNTDG 63 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f~~~~------~~t~~--~~~~~~~~~~~~~~i~D~~G~~~~~~~~~---~~~------~~~~~ 63 (169)
+|++++|+||||++|++.... .++.+ ........++.++.++||||......... ..+ .+.|+
T Consensus 42 llvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~Dv 121 (313)
T TIGR00991 42 LVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDV 121 (313)
T ss_pred EEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCE
Confidence 367899999999999863222 11111 12222345789999999999775432221 112 26899
Q ss_pred EEEEEECCC--hhhH-HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030931 64 LIYVVDSLD--RERI-GKAKQEFQAIIKDPFMLNSVILVFANKQDMK 107 (169)
Q Consensus 64 ii~v~d~~~--~~~~-~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 107 (169)
+++|..++. .... ..+.+.+.+..... --.+.+++.|+.|..
T Consensus 122 VLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~--iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 122 LLYVDRLDAYRVDTLDGQVIRAITDSFGKD--IWRKSLVVLTHAQFS 166 (313)
T ss_pred EEEEeccCcccCCHHHHHHHHHHHHHhhhh--hhccEEEEEECCccC
Confidence 999965532 2211 22333344443322 124799999999965
No 302
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.94 E-value=5e-09 Score=75.52 Aligned_cols=106 Identities=10% Similarity=0.002 Sum_probs=64.7
Q ss_pred CccccCCCCCceeeeeceeee--------eeeeeEEEEEEEECCEEEEEEEcCCCCCchh---h-------HHhhcc--C
Q 030931 1 MLRVKQPYCTSCTLVKFYLLF--------LLLVRFNVEKVQYKNVIFTVWDVGGQEKLRP---L-------WRHYFN--N 60 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f~~~~--------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~-------~~~~~~--~ 60 (169)
+|+++.|+|||||+|.+.... ..|..........++.++.+|||||-..... . ...++. .
T Consensus 35 llvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~ 114 (249)
T cd01853 35 LVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKT 114 (249)
T ss_pred EEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccC
Confidence 367899999999999763322 2333444444556788999999999765421 1 112332 5
Q ss_pred CCEEEEEEECCCh-hhHH--HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030931 61 TDGLIYVVDSLDR-ERIG--KAKQEFQAIIKDPFMLNSVILVFANKQDMKG 108 (169)
Q Consensus 61 ~~~ii~v~d~~~~-~~~~--~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 108 (169)
.+++++|..++.. .+.. .+.+.+.+.+.... -.++++|.||+|...
T Consensus 115 idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i--~~~~ivV~T~~d~~~ 163 (249)
T cd01853 115 PDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSI--WRNAIVVLTHAASSP 163 (249)
T ss_pred CCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhh--HhCEEEEEeCCccCC
Confidence 7888888766432 2222 23334444333111 246999999999754
No 303
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=4.9e-09 Score=84.90 Aligned_cols=97 Identities=16% Similarity=0.096 Sum_probs=72.7
Q ss_pred CCCCceeeeec-------------------------eeeeeeeeeEEEEEEEECC-EEEEEEEcCCCCCchhhHHhhccC
Q 030931 7 PYCTSCTLVKF-------------------------YLLFLLLVRFNVEKVQYKN-VIFTVWDVGGQEKLRPLWRHYFNN 60 (169)
Q Consensus 7 ~~~Ktsll~~f-------------------------~~~~~~t~~~~~~~~~~~~-~~~~i~D~~G~~~~~~~~~~~~~~ 60 (169)
.+|||||..++ ..+..-|+.....++.+.+ +.+++.|||||-.|.......++-
T Consensus 20 daGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVDFt~EV~rslrv 99 (697)
T COG0480 20 DAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVDFTIEVERSLRV 99 (697)
T ss_pred CCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccccHHHHHHHHHh
Confidence 68999999864 1122334444556677775 999999999999999999999999
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030931 61 TDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG 108 (169)
Q Consensus 61 ~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 108 (169)
+|+++.|+|+...-....-..|.+.. + .++|.+++.||+|...
T Consensus 100 lDgavvVvdaveGV~~QTEtv~rqa~-~----~~vp~i~fiNKmDR~~ 142 (697)
T COG0480 100 LDGAVVVVDAVEGVEPQTETVWRQAD-K----YGVPRILFVNKMDRLG 142 (697)
T ss_pred hcceEEEEECCCCeeecHHHHHHHHh-h----cCCCeEEEEECccccc
Confidence 99999999997654333333344333 2 3789999999999764
No 304
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.88 E-value=7.1e-09 Score=73.83 Aligned_cols=132 Identities=5% Similarity=-0.118 Sum_probs=73.4
Q ss_pred ccccCCCCCceeeeeceeee-eeeeeEE---EEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH
Q 030931 2 LRVKQPYCTSCTLVKFYLLF-LLLVRFN---VEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG 77 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~-~~t~~~~---~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~ 77 (169)
+.+.+|+|||||++.+.... ..+.... +......+..+.++||||.. ..+ ....+.+|++++|+|.+......
T Consensus 44 ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~i~i~~~~~~~i~~vDtPg~~--~~~-l~~ak~aDvVllviDa~~~~~~~ 120 (225)
T cd01882 44 VVGPPGVGKTTLIKSLVKNYTKQNISDIKGPITVVTGKKRRLTFIECPNDI--NAM-IDIAKVADLVLLLIDASFGFEME 120 (225)
T ss_pred EECCCCCCHHHHHHHHHhhcccCccccccccEEEEecCCceEEEEeCCchH--HHH-HHHHHhcCEEEEEEecCcCCCHH
Confidence 45678999999998663221 1111110 11123367889999999864 322 33468899999999997543322
Q ss_pred HHHHHHHHHhcCCCCCCCeE-EEEEeCCCCCCCCC-HhHHHhhhCCCCC--CCceeEEEEeeeccCCC
Q 030931 78 KAKQEFQAIIKDPFMLNSVI-LVFANKQDMKGAMT-PMEVCEGLGLFDL--KNRKWHIQGTCALKGDG 141 (169)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~pi-ivv~nK~Dl~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~g 141 (169)
. ...+..+ .. .+.|. ++|+||+|+.+... .+++...+..... ...+.+++.+||++.-.
T Consensus 121 ~-~~i~~~l-~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~ 183 (225)
T cd01882 121 T-FEFLNIL-QV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGR 183 (225)
T ss_pred H-HHHHHHH-HH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCC
Confidence 2 1222222 21 24664 55999999864321 1222222211000 11235799999998843
No 305
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.86 E-value=3e-08 Score=77.44 Aligned_cols=143 Identities=17% Similarity=0.089 Sum_probs=96.0
Q ss_pred ccccCCCCCceeeeecee-----eeeeeee----EEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVKFYL-----LFLLLVR----FNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~-----~~~~t~~----~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
+.+..++|||.+++.|-. .+..+.. ++...+......+.+-|.+-. ....+...- ..||+++++||+++
T Consensus 430 V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~~~YDsS~ 507 (625)
T KOG1707|consen 430 VVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVACLVYDSSN 507 (625)
T ss_pred EEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEEEecccCC
Confidence 457889999999998722 3333333 333334445556666676643 111111111 67999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC-----CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA-----MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD 147 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 147 (169)
+.+|......+...... ...|+++|+.|+|+.+. ..+.+++..+++.. .+..|.++... .++|.
T Consensus 508 p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~-------P~~~S~~~~~s-~~lf~ 576 (625)
T KOG1707|consen 508 PRSFEYLAEVYNKYFDL---YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPP-------PIHISSKTLSS-NELFI 576 (625)
T ss_pred chHHHHHHHHHHHhhhc---cCCceEEEeeccccchhhhccCCChHHHHHhcCCCC-------CeeeccCCCCC-chHHH
Confidence 99999887666555322 58999999999999653 24567777776552 46666664333 89999
Q ss_pred HHHHHHHhhh
Q 030931 148 WLASTLKEMR 157 (169)
Q Consensus 148 ~l~~~~~~~~ 157 (169)
.|+..+..++
T Consensus 577 kL~~~A~~Ph 586 (625)
T KOG1707|consen 577 KLATMAQYPH 586 (625)
T ss_pred HHHHhhhCCC
Confidence 9998887776
No 306
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.83 E-value=7.8e-09 Score=75.81 Aligned_cols=100 Identities=19% Similarity=0.116 Sum_probs=64.1
Q ss_pred CCCCC-chhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCC
Q 030931 45 GGQEK-LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFD 123 (169)
Q Consensus 45 ~G~~~-~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~ 123 (169)
|||.. ........++.+|.+++|+|+.++.+-.. .++.+.+ .+.|+++|.||+|+.+........+.+.
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~--- 74 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFE--- 74 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHH---
Confidence 55532 22334567889999999999976543221 1223332 2579999999999853211122222221
Q ss_pred CCCceeEEEEeeeccCCCHHHHHHHHHHHHHhh
Q 030931 124 LKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM 156 (169)
Q Consensus 124 ~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (169)
..+.+++.+||+++.|++++.+.+...+.+.
T Consensus 75 --~~~~~vi~iSa~~~~gi~~L~~~i~~~~~~~ 105 (276)
T TIGR03596 75 --EKGIKALAINAKKGKGVKKIIKAAKKLLKEK 105 (276)
T ss_pred --HcCCeEEEEECCCcccHHHHHHHHHHHHHHh
Confidence 1224689999999999999999998877654
No 307
>PTZ00258 GTP-binding protein; Provisional
Probab=98.83 E-value=1.7e-08 Score=76.80 Aligned_cols=70 Identities=16% Similarity=0.131 Sum_probs=48.0
Q ss_pred ccccCCCCCceeeeecee-------eeeeeeeEEEEEEEEC-----------------CEEEEEEEcCCCCCc----hh-
Q 030931 2 LRVKQPYCTSCTLVKFYL-------LFLLLVRFNVEKVQYK-----------------NVIFTVWDVGGQEKL----RP- 52 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~-------~~~~t~~~~~~~~~~~-----------------~~~~~i~D~~G~~~~----~~- 52 (169)
|++.+++|||||+|.+.. .++.|+..+...+... ...++++||||...- ..
T Consensus 26 IVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga~~g~gL 105 (390)
T PTZ00258 26 IVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGASEGEGL 105 (390)
T ss_pred EECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCCcchhHH
Confidence 567999999999998733 2444555555555443 345899999995421 11
Q ss_pred --hHHhhccCCCEEEEEEECC
Q 030931 53 --LWRHYFNNTDGLIYVVDSL 71 (169)
Q Consensus 53 --~~~~~~~~~~~ii~v~d~~ 71 (169)
.....++.+|++++|+|..
T Consensus 106 g~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 106 GNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred HHHHHHHHHHCCEEEEEEeCC
Confidence 2233567899999999984
No 308
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=1.4e-08 Score=79.16 Aligned_cols=118 Identities=19% Similarity=0.202 Sum_probs=76.5
Q ss_pred eeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChh---hHH---HHHHHHHHHhcCCCCCCCeE
Q 030931 24 LVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE---RIG---KAKQEFQAIIKDPFMLNSVI 97 (169)
Q Consensus 24 t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~pi 97 (169)
|..+....++.....+.+.|.|||..|-...-.-...||++++|+|++..+ .|+ +.+ ....+++.. .-..+
T Consensus 242 Tm~v~~~~fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtr-Eha~llr~L--gi~ql 318 (603)
T KOG0458|consen 242 TMDVKTTWFESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTR-EHALLLRSL--GISQL 318 (603)
T ss_pred eEEeeeEEEecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchH-HHHHHHHHc--CcceE
Confidence 334445556678899999999999999877777778899999999996421 121 111 122232322 35679
Q ss_pred EEEEeCCCCCCCC--CHhHHHhhhC-----CCCCCCceeEEEEeeeccCCCHHH
Q 030931 98 LVFANKQDMKGAM--TPMEVCEGLG-----LFDLKNRKWHIQGTCALKGDGLYE 144 (169)
Q Consensus 98 ivv~nK~Dl~~~~--~~~~~~~~~~-----~~~~~~~~~~~~~~Sa~~~~gi~~ 144 (169)
++++||+|+.+=. ..+++...+. ...+..-.+.|++||+..|+|+..
T Consensus 319 ivaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k 372 (603)
T KOG0458|consen 319 IVAINKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIK 372 (603)
T ss_pred EEEeecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence 9999999986521 1233333332 111233445799999999999654
No 309
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.80 E-value=8.8e-09 Score=73.79 Aligned_cols=118 Identities=16% Similarity=0.149 Sum_probs=74.2
Q ss_pred CEEEEEEEcCCCCCch------hhHHhhc--cCCCEEEEEEECC---ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 030931 36 NVIFTVWDVGGQEKLR------PLWRHYF--NNTDGLIYVVDSL---DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQ 104 (169)
Q Consensus 36 ~~~~~i~D~~G~~~~~------~~~~~~~--~~~~~ii~v~d~~---~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~ 104 (169)
.....+.|||||-..- ...-..+ ....++++|+|.. ++.+|=+..-+...++-. ...|.+++.||+
T Consensus 115 ~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk---tklp~ivvfNK~ 191 (366)
T KOG1532|consen 115 EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYK---TKLPFIVVFNKT 191 (366)
T ss_pred ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHh---ccCCeEEEEecc
Confidence 4568899999975421 1111112 2457788888874 455676666666666543 378999999999
Q ss_pred CCCCCCC-------HhHHHhhhCC---------------CC-CCCceeEEEEeeeccCCCHHHHHHHHHHHHHhh
Q 030931 105 DMKGAMT-------PMEVCEGLGL---------------FD-LKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM 156 (169)
Q Consensus 105 Dl~~~~~-------~~~~~~~~~~---------------~~-~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (169)
|+.+..- .+...+.+.. .. .-.++...+-+||.+|.|.+++|..+-..+.++
T Consensus 192 Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy 266 (366)
T KOG1532|consen 192 DVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEY 266 (366)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHH
Confidence 9976421 1111111110 00 012445689999999999999999988766654
No 310
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.79 E-value=5.3e-08 Score=69.44 Aligned_cols=134 Identities=22% Similarity=0.352 Sum_probs=95.0
Q ss_pred eeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC----------hhhHHHHHHHHHHHhcCCCCC
Q 030931 24 LVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD----------RERIGKAKQEFQAIIKDPFML 93 (169)
Q Consensus 24 t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~ 93 (169)
|.|+-...+..+.++|+++|++||..-+..|-.++.+..++|||...+. .+++.+...+++.+-+...+.
T Consensus 189 TsGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~ 268 (379)
T KOG0099|consen 189 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLR 268 (379)
T ss_pred ccceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHh
Confidence 4456667788899999999999999989999999999999999998763 224445555666665566667
Q ss_pred CCeEEEEEeCCCCCCC------------------------------CCHhHHHhhh-------CCCCC---CCceeEEEE
Q 030931 94 NSVILVFANKQDMKGA------------------------------MTPMEVCEGL-------GLFDL---KNRKWHIQG 133 (169)
Q Consensus 94 ~~piivv~nK~Dl~~~------------------------------~~~~~~~~~~-------~~~~~---~~~~~~~~~ 133 (169)
.+.+|++.||.|+... .++.-+...+ ..+.. ....+.+.+
T Consensus 269 tisvIlFLNKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHF 348 (379)
T KOG0099|consen 269 TISVILFLNKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHF 348 (379)
T ss_pred hhheeEEecHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccce
Confidence 8899999999997320 0011111100 01111 234456788
Q ss_pred eeeccCCCHHHHHHHHHHHHHhhh
Q 030931 134 TCALKGDGLYEGLDWLASTLKEMR 157 (169)
Q Consensus 134 ~Sa~~~~gi~~~~~~l~~~~~~~~ 157 (169)
+.|.+.++|..+|+..-+.+...+
T Consensus 349 TcAvDTenIrrVFnDcrdiIqr~h 372 (379)
T KOG0099|consen 349 TCAVDTENIRRVFNDCRDIIQRMH 372 (379)
T ss_pred eEeechHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888776654
No 311
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.79 E-value=2.7e-09 Score=75.34 Aligned_cols=155 Identities=10% Similarity=-0.083 Sum_probs=84.4
Q ss_pred CccccCCCCCceeeeece------ee---eeeeeeEEEEEEEECCEEEEEEEcCCCCCch----hh---H----HhhccC
Q 030931 1 MLRVKQPYCTSCTLVKFY------LL---FLLLVRFNVEKVQYKNVIFTVWDVGGQEKLR----PL---W----RHYFNN 60 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f~------~~---~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~----~~---~----~~~~~~ 60 (169)
+|+++.|+||||+.|.+- .. ...|...........+..+.++||||-..-. .. . .....+
T Consensus 4 lllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g 83 (212)
T PF04548_consen 4 LLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPG 83 (212)
T ss_dssp EEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-
T ss_pred EEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCC
Confidence 478899999999999651 11 1224445555567799999999999943211 01 1 112347
Q ss_pred CCEEEEEEECCChh-hHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC----CCCCCCceeEEEEee
Q 030931 61 TDGLIYVVDSLDRE-RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLG----LFDLKNRKWHIQGTC 135 (169)
Q Consensus 61 ~~~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~~~~~S 135 (169)
.|++++|+...... .-....+++..++..... .-++|+.+..|.......++...... ....+.++-.|+..+
T Consensus 84 ~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~~--k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~~~f~ 161 (212)
T PF04548_consen 84 PHAFLLVIPLGRFTEEDREVLELLQEIFGEEIW--KHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRYHVFN 161 (212)
T ss_dssp ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGGG--GGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCEEECC
T ss_pred CeEEEEEEecCcchHHHHHHHHHHHHHccHHHH--hHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEEEEEe
Confidence 89999999987321 122333456665553222 35888888888655444322222000 001122333466655
Q ss_pred ec------cCCCHHHHHHHHHHHHHhhh
Q 030931 136 AL------KGDGLYEGLDWLASTLKEMR 157 (169)
Q Consensus 136 a~------~~~gi~~~~~~l~~~~~~~~ 157 (169)
.+ ....+.++++.+-..+.+..
T Consensus 162 n~~~~~~~~~~qv~~Ll~~ie~mv~~n~ 189 (212)
T PF04548_consen 162 NKTKDKEKDESQVSELLEKIEEMVQENG 189 (212)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence 55 33457777777776666654
No 312
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.79 E-value=1e-08 Score=67.76 Aligned_cols=78 Identities=14% Similarity=0.087 Sum_probs=49.6
Q ss_pred HHhhccCCCEEEEEEECCChhhHH--HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEE
Q 030931 54 WRHYFNNTDGLIYVVDSLDRERIG--KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHI 131 (169)
Q Consensus 54 ~~~~~~~~~~ii~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (169)
....++.+|++++|+|+.++.+.. .+..++... . .+.|+++|+||+|+.+.....+....+ +..+.++
T Consensus 5 ~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~----~-~~k~~iivlNK~DL~~~~~~~~~~~~~-----~~~~~~i 74 (141)
T cd01857 5 LWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV----D-PRKKNILLLNKADLLTEEQRKAWAEYF-----KKEGIVV 74 (141)
T ss_pred HHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc----c-CCCcEEEEEechhcCCHHHHHHHHHHH-----HhcCCeE
Confidence 345678999999999998765433 333333322 1 468999999999985432111222222 2233568
Q ss_pred EEeeeccCCC
Q 030931 132 QGTCALKGDG 141 (169)
Q Consensus 132 ~~~Sa~~~~g 141 (169)
+++||.++.+
T Consensus 75 i~iSa~~~~~ 84 (141)
T cd01857 75 VFFSALKENA 84 (141)
T ss_pred EEEEecCCCc
Confidence 9999998875
No 313
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=98.79 E-value=1e-07 Score=69.96 Aligned_cols=150 Identities=9% Similarity=-0.011 Sum_probs=96.7
Q ss_pred ccccCCCCCceeeeec--eeeeeeeeeEEEEEEEE------CCEEEEEEEcCCCCCchhhHHhhccCC----CEEEEEEE
Q 030931 2 LRVKQPYCTSCTLVKF--YLLFLLLVRFNVEKVQY------KNVIFTVWDVGGQEKLRPLWRHYFNNT----DGLIYVVD 69 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f--~~~~~~t~~~~~~~~~~------~~~~~~i~D~~G~~~~~~~~~~~~~~~----~~ii~v~d 69 (169)
+++..|+|||||+.++ .+.+.+-.|..+..+.. .-.++.+|=.-|.....++....+... ..+|++.|
T Consensus 57 vlGdn~sGKtsLi~klqg~e~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetlviltas 136 (473)
T KOG3905|consen 57 VLGDNGSGKTSLISKLQGSETVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETLVILTAS 136 (473)
T ss_pred EEccCCCchhHHHHHhhcccccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceEEEEEEe
Confidence 5778999999999988 34555555555554444 357799998888877666666554432 46778889
Q ss_pred CCCh-hhHHHHHHHHHHH----------------------------hc-----------C-------------------C
Q 030931 70 SLDR-ERIGKAKQEFQAI----------------------------IK-----------D-------------------P 90 (169)
Q Consensus 70 ~~~~-~~~~~~~~~~~~~----------------------------~~-----------~-------------------~ 90 (169)
++++ .-++++.+|..-+ .+ + .
T Consensus 137 ms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~llPL~~dt 216 (473)
T KOG3905|consen 137 MSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLLPLGQDT 216 (473)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccccccccCCcc
Confidence 9887 3344444443211 10 0 0
Q ss_pred --CCCCCeEEEEEeCCCCCC----CCC--H------hHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHh
Q 030931 91 --FMLNSVILVFANKQDMKG----AMT--P------MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE 155 (169)
Q Consensus 91 --~~~~~piivv~nK~Dl~~----~~~--~------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 155 (169)
-.-++|++||++|||... ..+ . +.....++ -.++...+.+|++...|++-+.+.|++.+..
T Consensus 217 Lt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFC----Lr~GaaLiyTSvKE~KNidllyKYivhr~yG 291 (473)
T KOG3905|consen 217 LTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFC----LRYGAALIYTSVKETKNIDLLYKYIVHRSYG 291 (473)
T ss_pred hhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHH----HHcCceeEEeecccccchHHHHHHHHHHhcC
Confidence 001479999999999732 111 0 11111222 2345568999999999999999999987665
No 314
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.78 E-value=7.4e-09 Score=70.67 Aligned_cols=91 Identities=15% Similarity=0.026 Sum_probs=58.8
Q ss_pred hhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEE
Q 030931 52 PLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHI 131 (169)
Q Consensus 52 ~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (169)
......+++||.+++|+|++++..-.. ..+.... .+.|+++|+||+|+.+.....+..+.+. .....+
T Consensus 11 ~~~~~~i~~aD~il~v~D~~~~~~~~~-~~i~~~~------~~k~~ilVlNK~Dl~~~~~~~~~~~~~~-----~~~~~v 78 (171)
T cd01856 11 RQIKEKLKLVDLVIEVRDARIPLSSRN-PLLEKIL------GNKPRIIVLNKADLADPKKTKKWLKYFE-----SKGEKV 78 (171)
T ss_pred HHHHHHHhhCCEEEEEeeccCccCcCC-hhhHhHh------cCCCEEEEEehhhcCChHHHHHHHHHHH-----hcCCeE
Confidence 345567889999999999976543211 1112111 3579999999999853311111111111 112358
Q ss_pred EEeeeccCCCHHHHHHHHHHHHH
Q 030931 132 QGTCALKGDGLYEGLDWLASTLK 154 (169)
Q Consensus 132 ~~~Sa~~~~gi~~~~~~l~~~~~ 154 (169)
+.+||+++.|++++.+.+...+.
T Consensus 79 i~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 79 LFVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred EEEECCCcccHHHHHHHHHHHHH
Confidence 99999999999999999988764
No 315
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=2.7e-08 Score=79.65 Aligned_cols=111 Identities=25% Similarity=0.249 Sum_probs=77.8
Q ss_pred EEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC---hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC-C----CC
Q 030931 39 FTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD---RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK-G----AM 110 (169)
Q Consensus 39 ~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~-~----~~ 110 (169)
+.++|||||+.|..++.....-||.+|+|+|+-+ +++.+++. +|+. ++.|+|+++||+|.. + +.
T Consensus 542 ~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~-----lLR~---rktpFivALNKiDRLYgwk~~p~ 613 (1064)
T KOG1144|consen 542 LLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESIN-----LLRM---RKTPFIVALNKIDRLYGWKSCPN 613 (1064)
T ss_pred eEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHH-----HHHh---cCCCeEEeehhhhhhcccccCCC
Confidence 7899999999999999999999999999999963 55565543 3332 478999999999952 1 00
Q ss_pred -C------------HhHHHh-------hh---CCCCC---C----CceeEEEEeeeccCCCHHHHHHHHHHHHHhhh
Q 030931 111 -T------------PMEVCE-------GL---GLFDL---K----NRKWHIQGTCALKGDGLYEGLDWLASTLKEMR 157 (169)
Q Consensus 111 -~------------~~~~~~-------~~---~~~~~---~----~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 157 (169)
+ ..++.. .+ +++.. + ...+.++++||..|+||.+++.+|+.......
T Consensus 614 ~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m 690 (1064)
T KOG1144|consen 614 APIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTM 690 (1064)
T ss_pred chHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHH
Confidence 0 011111 11 11100 1 12356899999999999999999998666543
No 316
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=5.5e-08 Score=76.34 Aligned_cols=73 Identities=16% Similarity=0.163 Sum_probs=55.8
Q ss_pred EEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030931 30 EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 107 (169)
Q Consensus 30 ~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 107 (169)
..+.+..++++++|||||-.|.-.....++-.|++|+|+|....-.-.....|.+.- + -++|.+.+.||+|..
T Consensus 97 t~~~w~~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~-r----y~vP~i~FiNKmDRm 169 (721)
T KOG0465|consen 97 TYFTWRDYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMK-R----YNVPRICFINKMDRM 169 (721)
T ss_pred eeeeeccceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHH-h----cCCCeEEEEehhhhc
Confidence 346668999999999999999999999999999999999986543222333333222 1 278999999999954
No 317
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=1.8e-08 Score=74.43 Aligned_cols=151 Identities=16% Similarity=0.105 Sum_probs=88.0
Q ss_pred ccccCCCCCceeeeec---------ee-----eeeeeeeEEEEEEEE---------CCEEEEEEEcCCCCCchhhHHhhc
Q 030931 2 LRVKQPYCTSCTLVKF---------YL-----LFLLLVRFNVEKVQY---------KNVIFTVWDVGGQEKLRPLWRHYF 58 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f---------~~-----~~~~t~~~~~~~~~~---------~~~~~~i~D~~G~~~~~~~~~~~~ 58 (169)
+++--.||||+|..++ +. ...-|...-+.++.. +...+.+.|+|||. ++.+..+
T Consensus 12 iLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHa---sLIRtii 88 (522)
T KOG0461|consen 12 ILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHA---SLIRTII 88 (522)
T ss_pred eEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcH---HHHHHHH
Confidence 3456689999999864 22 222333333333322 45678999999994 4555555
Q ss_pred cCC---CEEEEEEECCChhhHHHHHHH-HHHHhcCCCCCCCeEEEEEeCCCCCCCCC----HhHHHhhhC--CCCCC-Cc
Q 030931 59 NNT---DGLIYVVDSLDRERIGKAKQE-FQAIIKDPFMLNSVILVFANKQDMKGAMT----PMEVCEGLG--LFDLK-NR 127 (169)
Q Consensus 59 ~~~---~~ii~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~piivv~nK~Dl~~~~~----~~~~~~~~~--~~~~~-~~ 127 (169)
.+| |..++|+|+...-.-....-+ +-++ -....++|+||+|...+.. .++....+. +..-. ..
T Consensus 89 ggaqiiDlm~lviDv~kG~QtQtAEcLiig~~------~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~g 162 (522)
T KOG0461|consen 89 GGAQIIDLMILVIDVQKGKQTQTAECLIIGEL------LCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGFDG 162 (522)
T ss_pred hhhheeeeeeEEEehhcccccccchhhhhhhh------hccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCcCC
Confidence 544 778899998643211111111 1111 2345788888888754321 122222111 11111 23
Q ss_pred eeEEEEeeeccC----CCHHHHHHHHHHHHHhhhcccc
Q 030931 128 KWHIQGTCALKG----DGLYEGLDWLASTLKEMRAAGY 161 (169)
Q Consensus 128 ~~~~~~~Sa~~~----~gi~~~~~~l~~~~~~~~~~~~ 161 (169)
+.|++++||+.| ++|.++.+.+.+++.++++...
T Consensus 163 ~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd~~ 200 (522)
T KOG0461|consen 163 NSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRDEE 200 (522)
T ss_pred CCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcCCC
Confidence 478999999999 8888888888888887765543
No 318
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.72 E-value=5.6e-08 Score=75.73 Aligned_cols=156 Identities=10% Similarity=0.025 Sum_probs=98.5
Q ss_pred ccccCCCCCceeeeec--eeeeeeeeeEEEEEEEE------CCEEEEEEEcCCCCCchhhHHhhccC----CCEEEEEEE
Q 030931 2 LRVKQPYCTSCTLVKF--YLLFLLLVRFNVEKVQY------KNVIFTVWDVGGQEKLRPLWRHYFNN----TDGLIYVVD 69 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f--~~~~~~t~~~~~~~~~~------~~~~~~i~D~~G~~~~~~~~~~~~~~----~~~ii~v~d 69 (169)
+++..++|||||+.+| .+.+.++.+..|..++. ...++.+|...|...+..+....+.. --.+|+|.|
T Consensus 30 vlG~~~~GKttli~~L~~~e~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t~vvIvlD 109 (472)
T PF05783_consen 30 VLGDKGSGKTTLIARLQGIEDPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNTLVVIVLD 109 (472)
T ss_pred EEeCCCCchHHHHHHhhccCCCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccceEEEEEec
Confidence 5678999999999998 35566777766555544 23579999998877777776655542 367889999
Q ss_pred CCChhhH-HHHHHHHHHH----------------------------hc---CC-----------------C---------
Q 030931 70 SLDRERI-GKAKQEFQAI----------------------------IK---DP-----------------F--------- 91 (169)
Q Consensus 70 ~~~~~~~-~~~~~~~~~~----------------------------~~---~~-----------------~--------- 91 (169)
.+.+..+ +.+..|+.-+ .+ .. .
T Consensus 110 lS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~~lpl~~g 189 (472)
T PF05783_consen 110 LSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDESVLLPLGEG 189 (472)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccccccCCCCCc
Confidence 9976542 2222222111 00 00 0
Q ss_pred ----CCCCeEEEEEeCCCCCCCC----CH-hH---HHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhhh
Q 030931 92 ----MLNSVILVFANKQDMKGAM----TP-ME---VCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR 157 (169)
Q Consensus 92 ----~~~~piivv~nK~Dl~~~~----~~-~~---~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 157 (169)
.-++|++||++|+|..... .. ++ +....-...+-+++...+.||++...+++-+++.|.+.+....
T Consensus 190 ~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l~~~~ 267 (472)
T PF05783_consen 190 VLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHRLYGFP 267 (472)
T ss_pred ccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHHhccCC
Confidence 0037999999999964311 10 11 1111101111245667899999999999999999888877643
No 319
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=2.7e-08 Score=72.79 Aligned_cols=119 Identities=13% Similarity=0.035 Sum_probs=79.5
Q ss_pred EEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH----
Q 030931 37 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP---- 112 (169)
Q Consensus 37 ~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~---- 112 (169)
.++.|.|.|||+-.-...-.-..-.|++++|++.+.+..-.+.++.+..+ +. ..-..++++-||+|+......
T Consensus 86 R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Al-eI--igik~iiIvQNKIDlV~~E~AlE~y 162 (415)
T COG5257 86 RRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMAL-EI--IGIKNIIIVQNKIDLVSRERALENY 162 (415)
T ss_pred EEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHH-hh--hccceEEEEecccceecHHHHHHHH
Confidence 56889999999754433333333459999999998765555555444333 21 124579999999999653221
Q ss_pred hHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhhhccc
Q 030931 113 MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMRAAG 160 (169)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~~~ 160 (169)
+++.+-..-. -..+.+++++||..+.||+-+++.+.+.+..+....
T Consensus 163 ~qIk~FvkGt--~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd~ 208 (415)
T COG5257 163 EQIKEFVKGT--VAENAPIIPISAQHKANIDALIEAIEKYIPTPERDL 208 (415)
T ss_pred HHHHHHhccc--ccCCCceeeehhhhccCHHHHHHHHHHhCCCCccCC
Confidence 2222222211 134568999999999999999999999988775443
No 320
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.66 E-value=1.2e-07 Score=63.59 Aligned_cols=83 Identities=16% Similarity=0.129 Sum_probs=53.1
Q ss_pred CEEEEEEECCChhhHHHHHHHHH-HHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCC
Q 030931 62 DGLIYVVDSLDRERIGKAKQEFQ-AIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGD 140 (169)
Q Consensus 62 ~~ii~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 140 (169)
|.+++|+|+.++.+... .++. ..+.. .+.|+++|+||+|+.+.....+....+. ......++.+||+++.
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~~---~~~p~IiVlNK~Dl~~~~~~~~~~~~~~----~~~~~~ii~vSa~~~~ 71 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIERVLIKE---KGKKLILVLNKADLVPKEVLRKWLAYLR----HSYPTIPFKISATNGQ 71 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHHHHHhc---CCCCEEEEEechhcCCHHHHHHHHHHHH----hhCCceEEEEeccCCc
Confidence 68999999987654432 2232 22222 3689999999999853211111111121 1123458999999999
Q ss_pred CHHHHHHHHHHHH
Q 030931 141 GLYEGLDWLASTL 153 (169)
Q Consensus 141 gi~~~~~~l~~~~ 153 (169)
|++++++.+....
T Consensus 72 gi~~L~~~i~~~~ 84 (155)
T cd01849 72 GIEKKESAFTKQT 84 (155)
T ss_pred ChhhHHHHHHHHh
Confidence 9999999987654
No 321
>PRK13796 GTPase YqeH; Provisional
Probab=98.62 E-value=4.4e-08 Score=74.54 Aligned_cols=102 Identities=24% Similarity=0.262 Sum_probs=59.8
Q ss_pred cCCC-EEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCCCCCcee---EEEE
Q 030931 59 NNTD-GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM-TPMEVCEGLGLFDLKNRKW---HIQG 133 (169)
Q Consensus 59 ~~~~-~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~---~~~~ 133 (169)
..++ .+++|+|+.+.. ......+..+. .+.|+++|+||+|+.... ..+++.+.+. ...+..++ .++.
T Consensus 67 ~~~~~lIv~VVD~~D~~--~s~~~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l~-~~~k~~g~~~~~v~~ 138 (365)
T PRK13796 67 GDSDALVVNVVDIFDFN--GSWIPGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWLR-QEAKELGLRPVDVVL 138 (365)
T ss_pred cccCcEEEEEEECccCC--CchhHHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHHH-HHHHhcCCCcCcEEE
Confidence 4444 899999997743 11122233322 267999999999996422 2222222111 00111122 4899
Q ss_pred eeeccCCCHHHHHHHHHHHHHhhh--ccccccccccC
Q 030931 134 TCALKGDGLYEGLDWLASTLKEMR--AAGYSSVGTSS 168 (169)
Q Consensus 134 ~Sa~~~~gi~~~~~~l~~~~~~~~--~~~~~~~~~~s 168 (169)
+||+++.|++++++.+.+...... .-+.+..|+||
T Consensus 139 vSAk~g~gI~eL~~~I~~~~~~~~v~vvG~~NvGKST 175 (365)
T PRK13796 139 ISAQKGHGIDELLEAIEKYREGRDVYVVGVTNVGKST 175 (365)
T ss_pred EECCCCCCHHHHHHHHHHhcCCCeEEEEcCCCCcHHH
Confidence 999999999999999977543221 23455666665
No 322
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.60 E-value=1.5e-07 Score=69.47 Aligned_cols=101 Identities=22% Similarity=0.153 Sum_probs=64.5
Q ss_pred cCCCCC-chhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC
Q 030931 44 VGGQEK-LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF 122 (169)
Q Consensus 44 ~~G~~~-~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~ 122 (169)
.|||.. -.......++.+|++++|+|+.++.+-.. .++.+.+. +.|+++|.||+|+.+........+.+.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~~-----~kp~iiVlNK~DL~~~~~~~~~~~~~~-- 77 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKIIG-----NKPRLLILNKSDLADPEVTKKWIEYFE-- 77 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHhC-----CCCEEEEEEchhcCCHHHHHHHHHHHH--
Confidence 356532 12334557889999999999976543221 22333322 579999999999853211112222121
Q ss_pred CCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhh
Q 030931 123 DLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM 156 (169)
Q Consensus 123 ~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (169)
..+.+++.+||+++.|+.++.+.+...+.+.
T Consensus 78 ---~~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 78 ---EQGIKALAINAKKGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred ---HcCCeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 1134689999999999999999988877654
No 323
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=1.1e-07 Score=75.43 Aligned_cols=67 Identities=19% Similarity=0.255 Sum_probs=53.7
Q ss_pred CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 030931 35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 106 (169)
Q Consensus 35 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl 106 (169)
+.+-+++.|||||-.|....-..++.+|++++|+|+.+.-.++.-+ .++.. ...+.|+++|+||+|.
T Consensus 195 KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr-~ikha----iq~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 195 KSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTER-IIKHA----IQNRLPIVVVINKVDR 261 (971)
T ss_pred ceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHH-HHHHH----HhccCcEEEEEehhHH
Confidence 5788999999999999998888999999999999997765554322 23232 2247899999999995
No 324
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.51 E-value=1.8e-07 Score=67.87 Aligned_cols=130 Identities=22% Similarity=0.165 Sum_probs=75.3
Q ss_pred eeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 030931 24 LVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANK 103 (169)
Q Consensus 24 t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK 103 (169)
|+......++.+...+-..|+|||..|-...-.-..++|+.|+|+.+++-.- .+.++.+ |-.....-.-++++.||
T Consensus 62 TIntahveyet~~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpm-PqTrEHi---LlarqvGvp~ivvflnK 137 (394)
T COG0050 62 TINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPM-PQTREHI---LLARQVGVPYIVVFLNK 137 (394)
T ss_pred eeccceeEEecCCceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCC-Ccchhhh---hhhhhcCCcEEEEEEec
Confidence 3333334455588999999999998876655555678899999999977432 2222111 11111123468888999
Q ss_pred CCCCCCCCH-----hHHHhhhCCCCCCCceeEEEEeeeccC-C-------CHHHHHHHHHHHHHhhh
Q 030931 104 QDMKGAMTP-----MEVCEGLGLFDLKNRKWHIQGTCALKG-D-------GLYEGLDWLASTLKEMR 157 (169)
Q Consensus 104 ~Dl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~-------gi~~~~~~l~~~~~~~~ 157 (169)
+|+.+.... .|+.+.+......--..|++.-||..- + .|.++++.+-..+..+.
T Consensus 138 ~Dmvdd~ellelVemEvreLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Pe 204 (394)
T COG0050 138 VDMVDDEELLELVEMEVRELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPE 204 (394)
T ss_pred ccccCcHHHHHHHHHHHHHHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCC
Confidence 999763221 223333322222233456777777632 2 24566666665555543
No 325
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.50 E-value=1.1e-07 Score=66.80 Aligned_cols=138 Identities=22% Similarity=0.349 Sum_probs=102.7
Q ss_pred eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC----------ChhhHHHHHHHHHHHhcC
Q 030931 20 LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL----------DRERIGKAKQEFQAIIKD 89 (169)
Q Consensus 20 ~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~----------~~~~~~~~~~~~~~~~~~ 89 (169)
...||.|+...+++...+.+.+.|++|+..-+..|-+++.+...++|.+.++ +.++++....++..++..
T Consensus 182 vRvPTTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~y 261 (359)
T KOG0085|consen 182 VRVPTTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITY 261 (359)
T ss_pred eecCcccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhcc
Confidence 3467778888888889999999999999988888999999988888877654 456788888889999888
Q ss_pred CCCCCCeEEEEEeCCCCCCCC-----------------CHhHHHhhhC------CCCCCCceeEEEEeeeccCCCHHHHH
Q 030931 90 PFMLNSVILVFANKQDMKGAM-----------------TPMEVCEGLG------LFDLKNRKWHIQGTCALKGDGLYEGL 146 (169)
Q Consensus 90 ~~~~~~piivv~nK~Dl~~~~-----------------~~~~~~~~~~------~~~~~~~~~~~~~~Sa~~~~gi~~~~ 146 (169)
+...+.++|++.||.|+.+.. ...+....+- ...-..+-+.-.+++|.+.+||--+|
T Consensus 262 PWF~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVF 341 (359)
T KOG0085|consen 262 PWFQNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVF 341 (359)
T ss_pred ccccCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHH
Confidence 888999999999999985421 0011111110 11112223334678999999999999
Q ss_pred HHHHHHHHhhh
Q 030931 147 DWLASTLKEMR 157 (169)
Q Consensus 147 ~~l~~~~~~~~ 157 (169)
..+-+.+.+..
T Consensus 342 aaVkDtiLq~~ 352 (359)
T KOG0085|consen 342 AAVKDTILQLN 352 (359)
T ss_pred HHHHHHHHHhh
Confidence 99888777654
No 326
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.49 E-value=1.1e-06 Score=61.54 Aligned_cols=100 Identities=16% Similarity=0.143 Sum_probs=60.5
Q ss_pred EEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeE--EEEEeCCCCCCCC--CH
Q 030931 37 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVI--LVFANKQDMKGAM--TP 112 (169)
Q Consensus 37 ~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi--ivv~nK~Dl~~~~--~~ 112 (169)
....+.++.|..-.....+. -++.+|.|+|+.+.++... .+. ..+.. ++++||+|+.+.. ..
T Consensus 92 ~D~iiIEt~G~~l~~~~~~~---l~~~~i~vvD~~~~~~~~~--~~~---------~qi~~ad~~~~~k~d~~~~~~~~~ 157 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSPE---LADLTIFVIDVAAGDKIPR--KGG---------PGITRSDLLVINKIDLAPMVGADL 157 (199)
T ss_pred CCEEEEECCCCCcccccchh---hhCcEEEEEEcchhhhhhh--hhH---------hHhhhccEEEEEhhhccccccccH
Confidence 44556777773211112211 2688999999976544221 111 12333 8999999997532 23
Q ss_pred hHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHH
Q 030931 113 MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL 153 (169)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~ 153 (169)
+.+.+..... ..+.+++++||++|+|++++|+++.+.+
T Consensus 158 ~~~~~~~~~~---~~~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 158 GVMERDAKKM---RGEKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred HHHHHHHHHh---CCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3333322211 2245699999999999999999998754
No 327
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.48 E-value=2.7e-07 Score=67.54 Aligned_cols=56 Identities=21% Similarity=0.261 Sum_probs=39.1
Q ss_pred CCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHH
Q 030931 94 NSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAST 152 (169)
Q Consensus 94 ~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 152 (169)
..+-++++||+|+.+.. +.+.+...+.. .....+++++||++|+|++++.+|+...
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~---lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACARE---VNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHh---hCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 46789999999996532 23333333221 1223569999999999999999999764
No 328
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.45 E-value=4.1e-07 Score=61.64 Aligned_cols=65 Identities=20% Similarity=0.166 Sum_probs=44.0
Q ss_pred CEEEEEEEcCCCCC----chhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 030931 36 NVIFTVWDVGGQEK----LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQ 104 (169)
Q Consensus 36 ~~~~~i~D~~G~~~----~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~ 104 (169)
...+.++||||-.. ...++..+++.+|++|+|.+.+...+-.....+.+.. +. ....+++|.||.
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~-~~---~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQML-DP---DKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHH-TT---TCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHh-cC---CCCeEEEEEcCC
Confidence 34589999999532 3356788889999999999998755444444444444 22 234499999984
No 329
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.44 E-value=2.2e-07 Score=63.60 Aligned_cols=79 Identities=23% Similarity=0.188 Sum_probs=49.0
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHhc-CCCCCCCeEEEEEeCCCCCCCCCH--hHHHhhhCCCCCCCceeEEEEeeecc
Q 030931 62 DGLIYVVDSLDRERIGKAKQEFQAIIK-DPFMLNSVILVFANKQDMKGAMTP--MEVCEGLGLFDLKNRKWHIQGTCALK 138 (169)
Q Consensus 62 ~~ii~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~ 138 (169)
+.-|+|+|.+.-+... ++ .+.+. .-=++|+||.|+...... +.+...... -+-..+++++|+++
T Consensus 119 ~~~v~VidvteGe~~P---------~K~gP~i~-~aDllVInK~DLa~~v~~dlevm~~da~~---~np~~~ii~~n~kt 185 (202)
T COG0378 119 HLRVVVIDVTEGEDIP---------RKGGPGIF-KADLLVINKTDLAPYVGADLEVMARDAKE---VNPEAPIIFTNLKT 185 (202)
T ss_pred ceEEEEEECCCCCCCc---------ccCCCcee-EeeEEEEehHHhHHHhCccHHHHHHHHHH---hCCCCCEEEEeCCC
Confidence 4778888886543111 11 11111 256789999999765432 333222211 12235699999999
Q ss_pred CCCHHHHHHHHHHHH
Q 030931 139 GDGLYEGLDWLASTL 153 (169)
Q Consensus 139 ~~gi~~~~~~l~~~~ 153 (169)
|+|++++++|+....
T Consensus 186 g~G~~~~~~~i~~~~ 200 (202)
T COG0378 186 GEGLDEWLRFIEPQA 200 (202)
T ss_pred CcCHHHHHHHHHhhc
Confidence 999999999987653
No 330
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.43 E-value=1.3e-06 Score=63.60 Aligned_cols=113 Identities=19% Similarity=0.192 Sum_probs=73.0
Q ss_pred CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHh
Q 030931 35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM-TPM 113 (169)
Q Consensus 35 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~-~~~ 113 (169)
.++.+.|.+|.|..... -.....+|.+++|.-..--+..+.++.=+-+ +-=++|+||.|..++. ...
T Consensus 142 aG~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~GimE---------iaDi~vINKaD~~~A~~a~r 209 (323)
T COG1703 142 AGYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKAGIME---------IADIIVINKADRKGAEKAAR 209 (323)
T ss_pred cCCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHhhhhh---------hhheeeEeccChhhHHHHHH
Confidence 46778899998753211 2244668999988866544444444433323 3457899999976542 234
Q ss_pred HHHhhhCCCC--CCC--ceeEEEEeeeccCCCHHHHHHHHHHHHHhhhcc
Q 030931 114 EVCEGLGLFD--LKN--RKWHIQGTCALKGDGLYEGLDWLASTLKEMRAA 159 (169)
Q Consensus 114 ~~~~~~~~~~--~~~--~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~~ 159 (169)
++...+.... ... ...+.+.|||.+|+|++++++.+.++.......
T Consensus 210 ~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~s 259 (323)
T COG1703 210 ELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTES 259 (323)
T ss_pred HHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHhc
Confidence 4444444332 222 234699999999999999999999877766544
No 331
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.39 E-value=6.1e-07 Score=65.53 Aligned_cols=70 Identities=16% Similarity=0.087 Sum_probs=47.7
Q ss_pred ccccCCCCCceeeeecee-------eeeeeeeEEEEEEEECC-----------------EEEEEEEcCCCCCc----hhh
Q 030931 2 LRVKQPYCTSCTLVKFYL-------LFLLLVRFNVEKVQYKN-----------------VIFTVWDVGGQEKL----RPL 53 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~-------~~~~t~~~~~~~~~~~~-----------------~~~~i~D~~G~~~~----~~~ 53 (169)
|.+.+.+|||||+|+++. .+++|+..+...+.+.+ ..++++|+||...- ..+
T Consensus 3 ivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~gl 82 (274)
T cd01900 3 IVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGEGL 82 (274)
T ss_pred EeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhhHH
Confidence 578999999999997632 34556565555554433 25999999995431 122
Q ss_pred ---HHhhccCCCEEEEEEECC
Q 030931 54 ---WRHYFNNTDGLIYVVDSL 71 (169)
Q Consensus 54 ---~~~~~~~~~~ii~v~d~~ 71 (169)
.-..++.+|++++|+|..
T Consensus 83 g~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 83 GNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHhCCEEEEEEeCc
Confidence 223467899999999874
No 332
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.33 E-value=1.4e-07 Score=71.35 Aligned_cols=147 Identities=12% Similarity=0.032 Sum_probs=71.5
Q ss_pred ccccCCCCCceeeeece-----eeeeeeeeE-----EEEEEEECC-EEEEEEEcCCCCCchhhHHh-----hccCCCEEE
Q 030931 2 LRVKQPYCTSCTLVKFY-----LLFLLLVRF-----NVEKVQYKN-VIFTVWDVGGQEKLRPLWRH-----YFNNTDGLI 65 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~-----~~~~~t~~~-----~~~~~~~~~-~~~~i~D~~G~~~~~~~~~~-----~~~~~~~ii 65 (169)
+.+..|+|||||+|.+. +......|+ ....+.... -++.+||.||...-.-.... -+...|.+|
T Consensus 40 V~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fi 119 (376)
T PF05049_consen 40 VTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVKFYRYDFFI 119 (376)
T ss_dssp EEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTTGGG-SEEE
T ss_pred EECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHccccccCEEE
Confidence 45789999999999771 111122221 112222222 24899999996432222222 355789888
Q ss_pred EEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC-------C--CCCHh----HH----HhhhCCCCCCCce
Q 030931 66 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK-------G--AMTPM----EV----CEGLGLFDLKNRK 128 (169)
Q Consensus 66 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~-------~--~~~~~----~~----~~~~~~~~~~~~~ 128 (169)
++.+ ++|.....++..-++. .++|+.+|-+|+|.. . ..+.+ ++ .+.+.. ..-..
T Consensus 120 ii~s----~rf~~ndv~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k--~gv~~ 190 (376)
T PF05049_consen 120 IISS----ERFTENDVQLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQK--AGVSE 190 (376)
T ss_dssp EEES----SS--HHHHHHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHC--TT-SS
T ss_pred EEeC----CCCchhhHHHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHH--cCCCc
Confidence 8764 3455544443333332 378999999999951 1 11111 11 112211 12233
Q ss_pred eEEEEeeeccCC--CHHHHHHHHHHHHHhhh
Q 030931 129 WHIQGTCALKGD--GLYEGLDWLASTLKEMR 157 (169)
Q Consensus 129 ~~~~~~Sa~~~~--gi~~~~~~l~~~~~~~~ 157 (169)
.++|-+|+.+-. .+..+.+.+.+.+...+
T Consensus 191 P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~K 221 (376)
T PF05049_consen 191 PQVFLVSSFDLSKYDFPKLEETLEKDLPAHK 221 (376)
T ss_dssp --EEEB-TTTTTSTTHHHHHHHHHHHS-GGG
T ss_pred CceEEEeCCCcccCChHHHHHHHHHHhHHHH
Confidence 468999988654 47778888887777654
No 333
>PRK01889 GTPase RsgA; Reviewed
Probab=98.32 E-value=4.5e-06 Score=63.44 Aligned_cols=84 Identities=17% Similarity=0.179 Sum_probs=56.2
Q ss_pred ccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeec
Q 030931 58 FNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCAL 137 (169)
Q Consensus 58 ~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 137 (169)
..++|.+++|+++...-....+..++..+-. .++|.++|+||+|+.+. .++....+.. . ..+++++.+|++
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~----~~i~piIVLNK~DL~~~--~~~~~~~~~~--~-~~g~~Vi~vSa~ 180 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE----SGAEPVIVLTKADLCED--AEEKIAEVEA--L-APGVPVLAVSAL 180 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHH----cCCCEEEEEEChhcCCC--HHHHHHHHHH--h-CCCCcEEEEECC
Confidence 5789999999999644444445555544422 36788999999999643 2222222211 1 235678999999
Q ss_pred cCCCHHHHHHHHH
Q 030931 138 KGDGLYEGLDWLA 150 (169)
Q Consensus 138 ~~~gi~~~~~~l~ 150 (169)
++.|++++..++.
T Consensus 181 ~g~gl~~L~~~L~ 193 (356)
T PRK01889 181 DGEGLDVLAAWLS 193 (356)
T ss_pred CCccHHHHHHHhh
Confidence 9999999888874
No 334
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.31 E-value=4.4e-07 Score=66.66 Aligned_cols=138 Identities=16% Similarity=0.081 Sum_probs=84.6
Q ss_pred ccCCCCCceeeeec-------eeeeeeeeeEEEEEEEE-CCEEEEEEEcCCCCC---------chhhHHhhccCCCEEEE
Q 030931 4 VKQPYCTSCTLVKF-------YLLFLLLVRFNVEKVQY-KNVIFTVWDVGGQEK---------LRPLWRHYFNNTDGLIY 66 (169)
Q Consensus 4 ~~~~~~Ktsll~~f-------~~~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~---------~~~~~~~~~~~~~~ii~ 66 (169)
+=..+|||||++++ .+.-+.|...+...... .+..+.+.||.|--. |+.... ....+|.++.
T Consensus 185 GYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLe-eVaeadlllH 263 (410)
T KOG0410|consen 185 GYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLE-EVAEADLLLH 263 (410)
T ss_pred eecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHH-HHhhcceEEE
Confidence 34689999999976 34556666655554444 356688899998321 222222 3467999999
Q ss_pred EEECCChhhHHHHHHHHHHHhcCCCCCCCeEE----EEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCH
Q 030931 67 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVIL----VFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGL 142 (169)
Q Consensus 67 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii----vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 142 (169)
|.|+++++.-.....-+. .++.-..++.|.+ =|-||+|...... .. ++. .-+.+||++|.|.
T Consensus 264 vvDiShP~ae~q~e~Vl~-vL~~igv~~~pkl~~mieVdnkiD~e~~~~----e~-------E~n--~~v~isaltgdgl 329 (410)
T KOG0410|consen 264 VVDISHPNAEEQRETVLH-VLNQIGVPSEPKLQNMIEVDNKIDYEEDEV----EE-------EKN--LDVGISALTGDGL 329 (410)
T ss_pred EeecCCccHHHHHHHHHH-HHHhcCCCcHHHHhHHHhhccccccccccC----cc-------ccC--CccccccccCccH
Confidence 999998865443332222 2222233334444 4556666532211 11 111 1588999999999
Q ss_pred HHHHHHHHHHHHhh
Q 030931 143 YEGLDWLASTLKEM 156 (169)
Q Consensus 143 ~~~~~~l~~~~~~~ 156 (169)
+++.+.+-..+...
T Consensus 330 ~el~~a~~~kv~~~ 343 (410)
T KOG0410|consen 330 EELLKAEETKVASE 343 (410)
T ss_pred HHHHHHHHHHhhhh
Confidence 99999887766553
No 335
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.26 E-value=5.7e-07 Score=64.40 Aligned_cols=110 Identities=16% Similarity=0.126 Sum_probs=65.3
Q ss_pred CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-Hh
Q 030931 35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-PM 113 (169)
Q Consensus 35 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~ 113 (169)
.++.+.|.+|.|.-. +.. ....-+|.+++|.-..--+..+.++.=+-+ +.=++|.||.|.+.+.. ..
T Consensus 120 aG~D~IiiETVGvGQ--sE~-~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimE---------iaDi~vVNKaD~~gA~~~~~ 187 (266)
T PF03308_consen 120 AGFDVIIIETVGVGQ--SEV-DIADMADTVVLVLVPGLGDEIQAIKAGIME---------IADIFVVNKADRPGADRTVR 187 (266)
T ss_dssp TT-SEEEEEEESSST--HHH-HHHTTSSEEEEEEESSTCCCCCTB-TTHHH---------H-SEEEEE--SHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCc--cHH-HHHHhcCeEEEEecCCCccHHHHHhhhhhh---------hccEEEEeCCChHHHHHHHH
Confidence 367788999987532 222 235678999999977544433333222222 35688999999654322 33
Q ss_pred HHHhhhCCCCCC--CceeEEEEeeeccCCCHHHHHHHHHHHHHhh
Q 030931 114 EVCEGLGLFDLK--NRKWHIQGTCALKGDGLYEGLDWLASTLKEM 156 (169)
Q Consensus 114 ~~~~~~~~~~~~--~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (169)
++...+.+.... ....+++.|||.++.||+++.+.+.++-...
T Consensus 188 ~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l 232 (266)
T PF03308_consen 188 DLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYL 232 (266)
T ss_dssp HHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 444444332222 2335799999999999999999988755443
No 336
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.25 E-value=1.1e-05 Score=61.74 Aligned_cols=83 Identities=12% Similarity=0.079 Sum_probs=45.3
Q ss_pred hcc-CCCEEEEEE-ECC----ChhhHHHH-HHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCcee
Q 030931 57 YFN-NTDGLIYVV-DSL----DRERIGKA-KQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKW 129 (169)
Q Consensus 57 ~~~-~~~~ii~v~-d~~----~~~~~~~~-~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 129 (169)
.++ .++..++|. |.+ .++.+... ..++.++.+ .++|.+++.||.|-.... ..++.+.+. .+++.
T Consensus 140 VI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~----~~kPfiivlN~~dp~~~e-t~~l~~~l~----eky~v 210 (492)
T TIGR02836 140 VIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEELKE----LNKPFIILLNSTHPYHPE-TEALRQELE----EKYDV 210 (492)
T ss_pred HHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHHHh----cCCCEEEEEECcCCCCch-hHHHHHHHH----HHhCC
Confidence 444 889999998 764 12233322 345555532 479999999999943221 222222221 23345
Q ss_pred EEEEeeeccCC--CHHHHHHH
Q 030931 130 HIQGTCALKGD--GLYEGLDW 148 (169)
Q Consensus 130 ~~~~~Sa~~~~--gi~~~~~~ 148 (169)
+++.+|+..-. .|..++..
T Consensus 211 pvl~v~c~~l~~~DI~~il~~ 231 (492)
T TIGR02836 211 PVLAMDVESMRESDILSVLEE 231 (492)
T ss_pred ceEEEEHHHcCHHHHHHHHHH
Confidence 66777776443 34444443
No 337
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.22 E-value=3.7e-06 Score=59.18 Aligned_cols=57 Identities=23% Similarity=0.222 Sum_probs=39.9
Q ss_pred CCeEEEEEeCCCCCCCCC--HhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHH
Q 030931 94 NSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL 153 (169)
Q Consensus 94 ~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~ 153 (169)
..|.++++||+|+.+... ..++...+.. .....+++++||+++.|++++|+++.+..
T Consensus 148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~---~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 148 KEADLIVINKADLAEAVGFDVEKMKADAKK---INPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred hhCCEEEEEHHHccccchhhHHHHHHHHHH---hCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 467899999999975322 2233332221 11235799999999999999999998753
No 338
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.22 E-value=3e-06 Score=64.10 Aligned_cols=70 Identities=16% Similarity=0.109 Sum_probs=47.4
Q ss_pred ccccCCCCCceeeeecee-------eeeeeeeEEEEEEEECC-----------------EEEEEEEcCCCCCc----hhh
Q 030931 2 LRVKQPYCTSCTLVKFYL-------LFLLLVRFNVEKVQYKN-----------------VIFTVWDVGGQEKL----RPL 53 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~-------~~~~t~~~~~~~~~~~~-----------------~~~~i~D~~G~~~~----~~~ 53 (169)
|++.+.+|||||+|+++. .+++|+..+...+.... ..+.+.|+||...- ..+
T Consensus 7 IVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~g~gl 86 (364)
T PRK09601 7 IVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGEGL 86 (364)
T ss_pred EECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCChHHHH
Confidence 577999999999997732 24455555544444432 35899999995431 122
Q ss_pred ---HHhhccCCCEEEEEEECC
Q 030931 54 ---WRHYFNNTDGLIYVVDSL 71 (169)
Q Consensus 54 ---~~~~~~~~~~ii~v~d~~ 71 (169)
.-..++.+|++++|+|..
T Consensus 87 g~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 87 GNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHhCCEEEEEEeCC
Confidence 223467899999999984
No 339
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.22 E-value=5.1e-06 Score=66.85 Aligned_cols=106 Identities=11% Similarity=0.044 Sum_probs=62.7
Q ss_pred CccccCCCCCceeeeeceeee--------eeeeeEEEEEEEECCEEEEEEEcCCCCCch-------hh---HHhhcc--C
Q 030931 1 MLRVKQPYCTSCTLVKFYLLF--------LLLVRFNVEKVQYKNVIFTVWDVGGQEKLR-------PL---WRHYFN--N 60 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f~~~~--------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~---~~~~~~--~ 60 (169)
+|++++|+||||++|.+.... ..|...........+..+.++||||-.... .+ ...+++ .
T Consensus 122 vLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~g 201 (763)
T TIGR00993 122 LVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNP 201 (763)
T ss_pred EEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCC
Confidence 367899999999999763221 122222222233467889999999976431 11 112333 5
Q ss_pred CCEEEEEEECCChhhH-H--HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030931 61 TDGLIYVVDSLDRERI-G--KAKQEFQAIIKDPFMLNSVILVFANKQDMKG 108 (169)
Q Consensus 61 ~~~ii~v~d~~~~~~~-~--~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 108 (169)
+|++++|..++..... + .+.+.+.+++.... -.-+|||.|+.|...
T Consensus 202 pDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~I--wk~tIVVFThgD~lp 250 (763)
T TIGR00993 202 PDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSI--WFNAIVTLTHAASAP 250 (763)
T ss_pred CCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHh--HcCEEEEEeCCccCC
Confidence 8999999877533221 2 22334444444222 245889999999764
No 340
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.21 E-value=5.1e-05 Score=54.29 Aligned_cols=144 Identities=15% Similarity=0.021 Sum_probs=91.9
Q ss_pred ccccCCCCCceeeeecee-------eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchh-------hHHhhccCCCEEEEE
Q 030931 2 LRVKQPYCTSCTLVKFYL-------LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRP-------LWRHYFNNTDGLIYV 67 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~-------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~~~~~~~~ii~v 67 (169)
|++=|-.|||||+-.++. ..+.|...-...+.+.+..+++.|.||.-.-.+ +.-...+.||.+++|
T Consensus 67 lIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArtaDlilMv 146 (364)
T KOG1486|consen 67 LIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVARTADLILMV 146 (364)
T ss_pred EecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeecccEEEEE
Confidence 445678899999987632 223344444445677899999999999433222 223356789999999
Q ss_pred EECCChhhHHHH-HHHHH----------------------------------------HHhcC-----------------
Q 030931 68 VDSLDRERIGKA-KQEFQ----------------------------------------AIIKD----------------- 89 (169)
Q Consensus 68 ~d~~~~~~~~~~-~~~~~----------------------------------------~~~~~----------------- 89 (169)
.|++..+.-..+ ...++ .++++
T Consensus 147 LDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~ReD~t~D 226 (364)
T KOG1486|consen 147 LDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLFREDCTVD 226 (364)
T ss_pred ecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEEecCCChH
Confidence 999865432211 11111 11110
Q ss_pred -------CCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHh
Q 030931 90 -------PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE 155 (169)
Q Consensus 90 -------~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 155 (169)
....-++++-|-||+|. .+.+++...-.+. .-+.+|+.-+.|++.+++.+.+.+.-
T Consensus 227 dfIDvi~gnr~Y~~ClYvYnKID~---vs~eevdrlAr~P-------nsvViSC~m~lnld~lle~iWe~l~L 289 (364)
T KOG1486|consen 227 DFIDVIEGNRVYIKCLYVYNKIDQ---VSIEEVDRLARQP-------NSVVISCNMKLNLDRLLERIWEELNL 289 (364)
T ss_pred HHHHHHhccceEEEEEEEeeccce---ecHHHHHHHhcCC-------CcEEEEeccccCHHHHHHHHHHHhce
Confidence 11113688888999985 4556655433322 26889999999999999999998765
No 341
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.18 E-value=8.9e-07 Score=67.19 Aligned_cols=93 Identities=19% Similarity=0.127 Sum_probs=68.2
Q ss_pred eeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 030931 24 LVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANK 103 (169)
Q Consensus 24 t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK 103 (169)
|+.--..+++|++++++++|||||-.|+-....+++-.|+++.|||.+..-.-..+..|.+.- ..++|-..++||
T Consensus 89 tiqsaav~fdwkg~rinlidtpghvdf~leverclrvldgavav~dasagve~qtltvwrqad-----k~~ip~~~fink 163 (753)
T KOG0464|consen 89 TIQSAAVNFDWKGHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQAD-----KFKIPAHCFINK 163 (753)
T ss_pred eeeeeeeecccccceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhcc-----ccCCchhhhhhh
Confidence 333344568889999999999999999999999999999999999997654333444454332 247899999999
Q ss_pred CCCCCCC---CHhHHHhhhCC
Q 030931 104 QDMKGAM---TPMEVCEGLGL 121 (169)
Q Consensus 104 ~Dl~~~~---~~~~~~~~~~~ 121 (169)
+|...+. ..+.+.+.++.
T Consensus 164 mdk~~anfe~avdsi~ekl~a 184 (753)
T KOG0464|consen 164 MDKLAANFENAVDSIEEKLGA 184 (753)
T ss_pred hhhhhhhhhhHHHHHHHHhCC
Confidence 9976432 33445555543
No 342
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.15 E-value=5.7e-06 Score=71.62 Aligned_cols=106 Identities=11% Similarity=0.086 Sum_probs=62.0
Q ss_pred CccccCCCCCceeeeec------eee--eeeeeeE-EEEEEEE-CCEEEEEEEcCCCCC--------chhhHHhhcc---
Q 030931 1 MLRVKQPYCTSCTLVKF------YLL--FLLLVRF-NVEKVQY-KNVIFTVWDVGGQEK--------LRPLWRHYFN--- 59 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f------~~~--~~~t~~~-~~~~~~~-~~~~~~i~D~~G~~~--------~~~~~~~~~~--- 59 (169)
|+++.+|+||||++++- .+. ...+.++ ....+++ -.-...++||+|..- ....|..++.
T Consensus 115 lviG~~gsGKtt~l~~sgl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~avliDtaG~y~~~~~~~~~~~~~W~~fL~~L~ 194 (1169)
T TIGR03348 115 LVIGPPGSGKTTLLQNSGLKFPLAERLGAAALRGVGGTRNCDWWFTDEAVLIDTAGRYTTQDSDPEEDAAAWLGFLGLLR 194 (1169)
T ss_pred EEECCCCCchhHHHHhCCCCCcCchhhccccccCCCCCcccceEecCCEEEEcCCCccccCCCcccccHHHHHHHHHHHH
Confidence 57889999999999953 110 1111111 1122322 122345889999442 2334655543
Q ss_pred ------CCCEEEEEEECCChh-----hH----HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030931 60 ------NTDGLIYVVDSLDRE-----RI----GKAKQEFQAIIKDPFMLNSVILVFANKQDMK 107 (169)
Q Consensus 60 ------~~~~ii~v~d~~~~~-----~~----~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 107 (169)
..+|+|+++|+.+.- .. ..++..+.++.+. ..-..||.++.+|+|+.
T Consensus 195 k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~-lg~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 195 KHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQ-LGARFPVYLVLTKADLL 256 (1169)
T ss_pred HhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHH-hCCCCCEEEEEecchhh
Confidence 589999999986432 11 2333444444332 22479999999999986
No 343
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.04 E-value=1e-05 Score=59.51 Aligned_cols=102 Identities=10% Similarity=0.110 Sum_probs=56.1
Q ss_pred CccccCCCCCceeeeec------eee---------eeeeeeEEEEEEEE----CCEEEEEEEcCCCCCch---hhHH---
Q 030931 1 MLRVKQPYCTSCTLVKF------YLL---------FLLLVRFNVEKVQY----KNVIFTVWDVGGQEKLR---PLWR--- 55 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f------~~~---------~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~---~~~~--- 55 (169)
||.+..|+|||||++.+ ... ..++..+....... -.+++.++||||-.... ..|.
T Consensus 8 mVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~~~I~ 87 (281)
T PF00735_consen 8 MVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCWEPIV 87 (281)
T ss_dssp EEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhhHHHH
Confidence 67789999999999965 111 11222333333222 35789999999943211 1111
Q ss_pred --------hhc-------------cCCCEEEEEEECCChh-hHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030931 56 --------HYF-------------NNTDGLIYVVDSLDRE-RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG 108 (169)
Q Consensus 56 --------~~~-------------~~~~~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 108 (169)
.++ ...|+++++++.+... +-.++ +.++.+- ...++|-|+.|+|...
T Consensus 88 ~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di-~~mk~Ls-----~~vNvIPvIaKaD~lt 156 (281)
T PF00735_consen 88 DYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI-EFMKRLS-----KRVNVIPVIAKADTLT 156 (281)
T ss_dssp HHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH-HHHHHHT-----TTSEEEEEESTGGGS-
T ss_pred HHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH-HHHHHhc-----ccccEEeEEecccccC
Confidence 111 1569999999986432 11122 3444442 3578999999999754
No 344
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.03 E-value=1.2e-05 Score=59.07 Aligned_cols=101 Identities=22% Similarity=0.187 Sum_probs=63.4
Q ss_pred hccCCCEEEEEEECCChh-hHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH--HHhhhCCCCCCCceeEEEE
Q 030931 57 YFNNTDGLIYVVDSLDRE-RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME--VCEGLGLFDLKNRKWHIQG 133 (169)
Q Consensus 57 ~~~~~~~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 133 (169)
-..+.+-.++|+.+.+++ +...+..++-.. ...++..++++||+|+.+...... ....+ ...+++.+.
T Consensus 76 ~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~a----e~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y-----~~~gy~v~~ 146 (301)
T COG1162 76 PVANNDQAIIVVSLVDPDFNTNLLDRYLVLA----EAGGIEPVIVLNKIDLLDDEEAAVKELLREY-----EDIGYPVLF 146 (301)
T ss_pred cccccceEEEEEeccCCCCCHHHHHHHHHHH----HHcCCcEEEEEEccccCcchHHHHHHHHHHH-----HhCCeeEEE
Confidence 344577777888776654 334444444333 224777888899999976543332 22222 345678999
Q ss_pred eeeccCCCHHHHHHHHHHHHHhhhccccccccccC
Q 030931 134 TCALKGDGLYEGLDWLASTLKEMRAAGYSSVGTSS 168 (169)
Q Consensus 134 ~Sa~~~~gi~~~~~~l~~~~~~~~~~~~~~~~~~s 168 (169)
+|++++.|++++.+.+...+.- -.+.++.|+||
T Consensus 147 ~s~~~~~~~~~l~~~l~~~~sv--l~GqSGVGKSS 179 (301)
T COG1162 147 VSAKNGDGLEELAELLAGKITV--LLGQSGVGKST 179 (301)
T ss_pred ecCcCcccHHHHHHHhcCCeEE--EECCCCCcHHH
Confidence 9999999999988877654221 22455666665
No 345
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.02 E-value=0.00026 Score=50.45 Aligned_cols=120 Identities=18% Similarity=0.220 Sum_probs=73.6
Q ss_pred CCEEEEEEEcCCCCCchhh---HHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhc-CCCCCCCeEEEEEeCCCCCCCC
Q 030931 35 KNVIFTVWDVGGQEKLRPL---WRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIK-DPFMLNSVILVFANKQDMKGAM 110 (169)
Q Consensus 35 ~~~~~~i~D~~G~~~~~~~---~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~piivv~nK~Dl~~~~ 110 (169)
.-+.+++||.|||-.+-.. ....++++.++|+|+|+.+. -.+.+..+...+.+ ..-.+++-+=+++.|.|-....
T Consensus 73 sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd 151 (347)
T KOG3887|consen 73 SFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDD 151 (347)
T ss_pred hhcceEEeecCCccccCCCccCHHHHHhccCeEEEEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchh
Confidence 4578999999999876443 35678999999999998442 22333333322222 2334688899999999954321
Q ss_pred C----HhHH----HhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhh
Q 030931 111 T----PMEV----CEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM 156 (169)
Q Consensus 111 ~----~~~~----~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (169)
. .+++ .+.+.-..+..-...++-+|-.+.. |-+.|..++..+.+.
T Consensus 152 ~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSIyDHS-IfEAFSkvVQkLipq 204 (347)
T KOG3887|consen 152 FKIETQRDIHQRTNDELADAGLEKVQVSFYLTSIYDHS-IFEAFSKVVQKLIPQ 204 (347)
T ss_pred hhhhhHHHHHHHhhHHHHhhhhccceEEEEEeeecchH-HHHHHHHHHHHHhhh
Confidence 1 1111 1112111223445567777777665 888888887766553
No 346
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.01 E-value=1.8e-05 Score=64.02 Aligned_cols=63 Identities=21% Similarity=0.239 Sum_probs=49.5
Q ss_pred CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh---hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 030931 35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR---ERIGKAKQEFQAIIKDPFMLNSVILVFANKQD 105 (169)
Q Consensus 35 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~piivv~nK~D 105 (169)
+++.++++|+|||-.|.+......+-+|+++..+|+... .+..-++ +.+. .+..+++|+||+|
T Consensus 70 ~~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlr---q~~~-----~~~~~~lvinkid 135 (887)
T KOG0467|consen 70 KDYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLR---QAWI-----EGLKPILVINKID 135 (887)
T ss_pred CceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHH---HHHH-----ccCceEEEEehhh
Confidence 789999999999999999999999999999999999643 2333222 2221 3566899999999
No 347
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.94 E-value=3.5e-05 Score=42.25 Aligned_cols=44 Identities=23% Similarity=0.321 Sum_probs=27.8
Q ss_pred CCCEEEEEEECCChhh--HHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 030931 60 NTDGLIYVVDSLDRER--IGKAKQEFQAIIKDPFMLNSVILVFANKQD 105 (169)
Q Consensus 60 ~~~~ii~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~piivv~nK~D 105 (169)
=.++++|++|++.... .++-..+++++.... .+.|+++|.||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F--~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF--PNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT--TTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc--CCCCEEEEEeccC
Confidence 3689999999987654 455555666765433 5899999999998
No 348
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=97.90 E-value=0.00012 Score=55.44 Aligned_cols=116 Identities=20% Similarity=0.101 Sum_probs=71.6
Q ss_pred CEEEEEEEcCCCCCchhh--HHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-
Q 030931 36 NVIFTVWDVGGQEKLRPL--WRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP- 112 (169)
Q Consensus 36 ~~~~~i~D~~G~~~~~~~--~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~- 112 (169)
+.-+.+.||.||+.+... +-..=++.|..++++.+++-.+- .-++-+......+.|++++.+|+|+.+....
T Consensus 200 DklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~-----~tkEHLgi~~a~~lPviVvvTK~D~~~ddr~~ 274 (527)
T COG5258 200 DKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTK-----MTKEHLGIALAMELPVIVVVTKIDMVPDDRFQ 274 (527)
T ss_pred ccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcch-----hhhHhhhhhhhhcCCEEEEEEecccCcHHHHH
Confidence 355889999999987543 33445678999999988764322 1112222222347999999999998653221
Q ss_pred ---hHHHhhhCC------------------CCCC--CceeEEEEeeeccCCCHHHHHHHHHHHHHhhh
Q 030931 113 ---MEVCEGLGL------------------FDLK--NRKWHIQGTCALKGDGLYEGLDWLASTLKEMR 157 (169)
Q Consensus 113 ---~~~~~~~~~------------------~~~~--~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 157 (169)
+++...+.. ...+ ..-.|+|.+|+.+|+|+ ++++.+...++..+
T Consensus 275 ~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~Gl-dlL~e~f~~Lp~rr 341 (527)
T COG5258 275 GVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGL-DLLDEFFLLLPKRR 341 (527)
T ss_pred HHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccH-HHHHHHHHhCCccc
Confidence 222221110 0111 12468999999999995 45666666665554
No 349
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=97.87 E-value=4.9e-05 Score=56.51 Aligned_cols=104 Identities=20% Similarity=0.209 Sum_probs=64.2
Q ss_pred EEEEEEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 030931 27 FNVEKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQ 104 (169)
Q Consensus 27 ~~~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~ 104 (169)
++.-++++ ....+-=.|+|||..|-...-.--.+.|+.|+|+..+|.. +.+.++.+-...+ . .-..++++.||.
T Consensus 105 In~aHveYeTa~RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~-MPQTrEHlLLArQ-V--GV~~ivvfiNKv 180 (449)
T KOG0460|consen 105 INAAHVEYETAKRHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGP-MPQTREHLLLARQ-V--GVKHIVVFINKV 180 (449)
T ss_pred EeeeeeeeeccccccccCCCCchHHHHHHhhcCccccCceEEEEEcCCCC-CcchHHHHHHHHH-c--CCceEEEEEecc
Confidence 44444444 6778888999999887765555567789999999998853 3333433222211 1 235688999999
Q ss_pred CCCCCCC--------HhHHHhhhCCCCCCCceeEEEEeeec
Q 030931 105 DMKGAMT--------PMEVCEGLGLFDLKNRKWHIQGTCAL 137 (169)
Q Consensus 105 Dl~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~Sa~ 137 (169)
|+.+..+ .+|+...+++ .--..|++.-||.
T Consensus 181 D~V~d~e~leLVEmE~RElLse~gf---~Gd~~PvI~GSAL 218 (449)
T KOG0460|consen 181 DLVDDPEMLELVEMEIRELLSEFGF---DGDNTPVIRGSAL 218 (449)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCC---CCCCCCeeecchh
Confidence 9974322 2223333332 2234678887764
No 350
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.86 E-value=5.4e-05 Score=54.35 Aligned_cols=142 Identities=16% Similarity=0.027 Sum_probs=86.4
Q ss_pred ccCCCCCceeeeeceeeeeeeeeEEE-------EEEEECCEEEEEEEcCCCCCc-------hhhHHhhccCCCEEEEEEE
Q 030931 4 VKQPYCTSCTLVKFYLLFLLLVRFNV-------EKVQYKNVIFTVWDVGGQEKL-------RPLWRHYFNNTDGLIYVVD 69 (169)
Q Consensus 4 ~~~~~~Ktsll~~f~~~~~~t~~~~~-------~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~~~~ii~v~d 69 (169)
+=+-.|||||+..+...+.+.-...+ ....+++-++++.|.||.-.- ..+.-...+.|+.+++|.|
T Consensus 66 gFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcnli~~vld 145 (358)
T KOG1487|consen 66 GFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNLIFIVLD 145 (358)
T ss_pred ecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecccEEEEEee
Confidence 34678999999977443333322222 224467889999999994321 1223335678999999999
Q ss_pred CCChhhHHHHH-----------------------------------------HHHHHH------------------hcC-
Q 030931 70 SLDRERIGKAK-----------------------------------------QEFQAI------------------IKD- 89 (169)
Q Consensus 70 ~~~~~~~~~~~-----------------------------------------~~~~~~------------------~~~- 89 (169)
+..+-+-..+. ..+.+. ...
T Consensus 146 ~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT~DdLIdvV 225 (358)
T KOG1487|consen 146 VLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDATADDLIDVV 225 (358)
T ss_pred ccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCcchhhhhhhh
Confidence 87443211111 111111 110
Q ss_pred -CCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHh
Q 030931 90 -PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE 155 (169)
Q Consensus 90 -~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 155 (169)
....-+|++.+.||+|- .+.+|+.-.+.. ...+++||.+++|++++++.+.+.+.-
T Consensus 226 egnr~yVp~iyvLNkIds---ISiEELdii~~i-------phavpISA~~~wn~d~lL~~mweyL~L 282 (358)
T KOG1487|consen 226 EGNRIYVPCIYVLNKIDS---ISIEELDIIYTI-------PHAVPISAHTGWNFDKLLEKMWEYLKL 282 (358)
T ss_pred ccCceeeeeeeeecccce---eeeeccceeeec-------cceeecccccccchHHHHHHHhhcchh
Confidence 11124799999999985 344444333322 248999999999999999999987655
No 351
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.70 E-value=1.5e-05 Score=52.65 Aligned_cols=46 Identities=13% Similarity=-0.045 Sum_probs=29.0
Q ss_pred CccccCCCCCceeeeeceeeeeeeee------EEEEEEEECCEEEEEEEcCCC
Q 030931 1 MLRVKQPYCTSCTLVKFYLLFLLLVR------FNVEKVQYKNVIFTVWDVGGQ 47 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f~~~~~~t~~------~~~~~~~~~~~~~~i~D~~G~ 47 (169)
++++.+++|||||+|++.....+... .....+..++ .+.+|||||-
T Consensus 87 ~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~DtpG~ 138 (141)
T cd01857 87 GLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP-TITLCDCPGL 138 (141)
T ss_pred EEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC-CEEEEECCCc
Confidence 46789999999999987333322111 1122233333 5899999996
No 352
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.60 E-value=3.2e-05 Score=56.73 Aligned_cols=121 Identities=11% Similarity=0.029 Sum_probs=72.2
Q ss_pred EEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH-H
Q 030931 37 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME-V 115 (169)
Q Consensus 37 ~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~-~ 115 (169)
..+.+.|+|||+-.-.....-..-.|++++.+..+....-.+..+.+..+ + .++=..++++-||+|+..+....+ .
T Consensus 125 RHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaav-e--iM~LkhiiilQNKiDli~e~~A~eq~ 201 (466)
T KOG0466|consen 125 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAV-E--IMKLKHIIILQNKIDLIKESQALEQH 201 (466)
T ss_pred EEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHH-H--HhhhceEEEEechhhhhhHHHHHHHH
Confidence 45788999999764433322223347777777665433222222222222 1 112357999999999975433222 1
Q ss_pred HhhhCCC-CCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhhhccc
Q 030931 116 CEGLGLF-DLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMRAAG 160 (169)
Q Consensus 116 ~~~~~~~-~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~~~ 160 (169)
.....+. .-...+.+++++||.-+.||+-+.+.++..+.-+.+..
T Consensus 202 e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvRdf 247 (466)
T KOG0466|consen 202 EQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVRDF 247 (466)
T ss_pred HHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCcccc
Confidence 1111111 11235678999999999999999999998887765443
No 353
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.52 E-value=0.00026 Score=53.16 Aligned_cols=103 Identities=11% Similarity=0.191 Sum_probs=61.2
Q ss_pred CccccCCCCCceeeeecee---------------eeeeeeeEEEEEEEE--C--CEEEEEEEcCCCCCc---hhhH----
Q 030931 1 MLRVKQPYCTSCTLVKFYL---------------LFLLLVRFNVEKVQY--K--NVIFTVWDVGGQEKL---RPLW---- 54 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f~~---------------~~~~t~~~~~~~~~~--~--~~~~~i~D~~G~~~~---~~~~---- 54 (169)
|+.+..|+||||++|.+.. ...||+.+....... + ...+++.||||-..+ ...|
T Consensus 27 m~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~we~I~ 106 (373)
T COG5019 27 MVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKCWEPIV 106 (373)
T ss_pred EEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccccHHHHH
Confidence 6788999999999997511 123555555544333 3 467888999994332 1112
Q ss_pred -------Hhhc--------------cCCCEEEEEEECCChhhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030931 55 -------RHYF--------------NNTDGLIYVVDSLDRERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGA 109 (169)
Q Consensus 55 -------~~~~--------------~~~~~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~ 109 (169)
..|+ ...|++++.+-++.. .+..+. ..+..+- +..-+|-|+-|+|....
T Consensus 107 ~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~Mk~ls-----~~vNlIPVI~KaD~lT~ 177 (373)
T COG5019 107 DYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEAMKRLS-----KRVNLIPVIAKADTLTD 177 (373)
T ss_pred HHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHHHHHHh-----cccCeeeeeeccccCCH
Confidence 2222 157999999987543 222222 2233332 24568888999997643
No 354
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=97.47 E-value=0.00012 Score=55.07 Aligned_cols=70 Identities=17% Similarity=0.106 Sum_probs=49.6
Q ss_pred ccccCCCCCceeeeec-------eeeeeeeeeEEEEEEEE------------------CCEEEEEEEcCCC-------CC
Q 030931 2 LRVKQPYCTSCTLVKF-------YLLFLLLVRFNVEKVQY------------------KNVIFTVWDVGGQ-------EK 49 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-------~~~~~~t~~~~~~~~~~------------------~~~~~~i~D~~G~-------~~ 49 (169)
|.++|.+|||||+|.. .+-++.|+..+...+.. -...++++|++|. +.
T Consensus 7 IVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs~GeG 86 (372)
T COG0012 7 IVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGASKGEG 86 (372)
T ss_pred EecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCcccCCC
Confidence 4569999999999965 34556677655443222 2366899999882 23
Q ss_pred chhhHHhhccCCCEEEEEEECC
Q 030931 50 LRPLWRHYFNNTDGLIYVVDSL 71 (169)
Q Consensus 50 ~~~~~~~~~~~~~~ii~v~d~~ 71 (169)
.....-..++.+|+++.|+|+.
T Consensus 87 LGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 87 LGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred cchHHHHhhhhcCeEEEEEEec
Confidence 4444556688999999999987
No 355
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.46 E-value=0.00036 Score=43.71 Aligned_cols=95 Identities=15% Similarity=0.062 Sum_probs=55.8
Q ss_pred cCCCCCceeeeeceeeeeeeeeEEEEEEEE---CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHH
Q 030931 5 KQPYCTSCTLVKFYLLFLLLVRFNVEKVQY---KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQ 81 (169)
Q Consensus 5 ~~~~~Ktsll~~f~~~~~~t~~~~~~~~~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~ 81 (169)
|+|.|||++...+.......-|..+.-++. .+..+.+.|+|+.... .....+..+|.++++.+. +..++.....
T Consensus 8 kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~~~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~-~~~s~~~~~~ 84 (106)
T cd03111 8 KGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFGDDYVVVDLGRSLDE--VSLAALDQADRVFLVTQQ-DLPSIRNAKR 84 (106)
T ss_pred CCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCCCCCEEEEeCCCCcCH--HHHHHHHHcCeEEEEecC-ChHHHHHHHH
Confidence 899999998775411111110222222222 1227899999987533 334567889999999976 4455666665
Q ss_pred HHHHHhcCCCCC-CCeEEEEEeC
Q 030931 82 EFQAIIKDPFML-NSVILVFANK 103 (169)
Q Consensus 82 ~~~~~~~~~~~~-~~piivv~nK 103 (169)
+++.+.+.. .+ ...+.+|+|+
T Consensus 85 ~~~~l~~~~-~~~~~~~~lVvNr 106 (106)
T cd03111 85 LLELLRVLD-YSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHHcC-CCCcCceEEEecC
Confidence 555543322 22 4467777775
No 356
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.43 E-value=0.00028 Score=53.24 Aligned_cols=103 Identities=15% Similarity=0.186 Sum_probs=60.1
Q ss_pred CccccCCCCCceeeeec-ee-------------eeeeeeeEEEEEEEE--C--CEEEEEEEcCCCCC-------chh---
Q 030931 1 MLRVKQPYCTSCTLVKF-YL-------------LFLLLVRFNVEKVQY--K--NVIFTVWDVGGQEK-------LRP--- 52 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f-~~-------------~~~~t~~~~~~~~~~--~--~~~~~i~D~~G~~~-------~~~--- 52 (169)
|+.+..|+|||||+|.+ .. ....|+.+....... + ..++++.||||-.. ++.
T Consensus 25 mvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~pi~~ 104 (366)
T KOG2655|consen 25 MVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWRPIVN 104 (366)
T ss_pred EEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccchhhhH
Confidence 66788999999999974 11 222244444444433 2 46778899999332 111
Q ss_pred ----hHHhhc-----------c--CCCEEEEEEECCChhhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030931 53 ----LWRHYF-----------N--NTDGLIYVVDSLDRERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGA 109 (169)
Q Consensus 53 ----~~~~~~-----------~--~~~~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~ 109 (169)
....|+ . ..|++++.+.++.. .+.... ..++.+- ....+|-|+-|+|....
T Consensus 105 yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l~-----~~vNiIPVI~KaD~lT~ 173 (366)
T KOG2655|consen 105 YIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKLS-----KKVNLIPVIAKADTLTK 173 (366)
T ss_pred HHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHHh-----ccccccceeeccccCCH
Confidence 112222 1 67999999987543 111111 2223331 35778889999997543
No 357
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.38 E-value=9.2e-05 Score=50.58 Aligned_cols=43 Identities=23% Similarity=0.172 Sum_probs=26.9
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHH-hcCCCCCCCeEEEEEeCCCCCC
Q 030931 62 DGLIYVVDSLDRERIGKAKQEFQAI-IKDPFMLNSVILVFANKQDMKG 108 (169)
Q Consensus 62 ~~ii~v~d~~~~~~~~~~~~~~~~~-~~~~~~~~~piivv~nK~Dl~~ 108 (169)
|++++|+|+.++.+-.. ..+.+.+ +.. .+.|+++|+||+|+.+
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~~l~~---~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAVLQAG---GNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHHHhcc---CCCCEEEEEehhhcCC
Confidence 68999999976532211 1112221 221 3589999999999964
No 358
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=97.31 E-value=8.7e-05 Score=53.75 Aligned_cols=140 Identities=12% Similarity=-0.017 Sum_probs=72.4
Q ss_pred ccCCCCCceeeeec----------eeeeeeeeeEEEEEEEECCEEEEEEEcCCCC----------CchhhHHhhccCCCE
Q 030931 4 VKQPYCTSCTLVKF----------YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQE----------KLRPLWRHYFNNTDG 63 (169)
Q Consensus 4 ~~~~~~Ktsll~~f----------~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~~~~~~~~~~ 63 (169)
+-...|||||++.+ .....-|..+++ +.. +-.+.+.|.||-. .+..+...|+..-+-
T Consensus 143 g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~--f~v-~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~n 219 (320)
T KOG2486|consen 143 GRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINH--FHV-GKSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLEREN 219 (320)
T ss_pred cCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeee--eec-cceEEEEecCCcccccCCccCcchHhHhHHHHHHhhhh
Confidence 45668999999954 112222333332 222 3457888999911 123344445543333
Q ss_pred ---EEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC----HhHHHhhhCCCCC----CCceeEEE
Q 030931 64 ---LIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT----PMEVCEGLGLFDL----KNRKWHIQ 132 (169)
Q Consensus 64 ---ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~----~~~~~~~~~~~~~----~~~~~~~~ 132 (169)
+.+.+|++-+ +..+.....+++.+ .++|..+|.||||...... ..+.........+ -....+|+
T Consensus 220 Lv~~FLLvd~sv~--i~~~D~~~i~~~ge---~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~ 294 (320)
T KOG2486|consen 220 LVRVFLLVDASVP--IQPTDNPEIAWLGE---NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWI 294 (320)
T ss_pred hheeeeeeeccCC--CCCCChHHHHHHhh---cCCCeEEeeehhhhhhhccccccCccccceeehhhccccceeccCCce
Confidence 3344455422 22222222233333 3799999999999753221 0011111101111 11234688
Q ss_pred EeeeccCCCHHHHHHHHHH
Q 030931 133 GTCALKGDGLYEGLDWLAS 151 (169)
Q Consensus 133 ~~Sa~~~~gi~~~~~~l~~ 151 (169)
.+|+.++.|++.++..+..
T Consensus 295 ~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 295 YVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred eeecccccCceeeeeehhh
Confidence 8999999999987765543
No 359
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.30 E-value=0.0005 Score=49.01 Aligned_cols=74 Identities=14% Similarity=-0.020 Sum_probs=47.6
Q ss_pred ccccCCCCCceeeeeceee----------eeeeeeEEEEEEEE---CCEEEEEEEcCCCCCchh------hHHhhccC--
Q 030931 2 LRVKQPYCTSCTLVKFYLL----------FLLLVRFNVEKVQY---KNVIFTVWDVGGQEKLRP------LWRHYFNN-- 60 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~----------~~~t~~~~~~~~~~---~~~~~~i~D~~G~~~~~~------~~~~~~~~-- 60 (169)
+.+.+++|||+|+|++... ...|.|+-...... ++..+.+.||+|...... .....+..
T Consensus 12 v~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~~l~~ll 91 (224)
T cd01851 12 VFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLFALATLL 91 (224)
T ss_pred EECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHHHHHHHH
Confidence 4679999999999987333 23345544444433 368899999999654321 12223334
Q ss_pred CCEEEEEEECCChhh
Q 030931 61 TDGLIYVVDSLDRER 75 (169)
Q Consensus 61 ~~~ii~v~d~~~~~~ 75 (169)
++.+|+..+......
T Consensus 92 ss~~i~n~~~~~~~~ 106 (224)
T cd01851 92 SSVLIYNSWETILGD 106 (224)
T ss_pred hCEEEEeccCcccHH
Confidence 889998888765443
No 360
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.29 E-value=0.0016 Score=46.89 Aligned_cols=69 Identities=12% Similarity=0.093 Sum_probs=43.5
Q ss_pred EEEEEEEcCCCCCc-------------hhhHHhhcc-CCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 030931 37 VIFTVWDVGGQEKL-------------RPLWRHYFN-NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFAN 102 (169)
Q Consensus 37 ~~~~i~D~~G~~~~-------------~~~~~~~~~-~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~n 102 (169)
..+.+.||||-... ..+...|++ ..+.+++|+|....-.-.......+.+ ...+.|+++|+|
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~l----d~~~~rti~ViT 200 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEV----DPQGERTIGVIT 200 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHH----HHcCCcEEEEEE
Confidence 66899999997421 224556777 456899999875422212222233333 113689999999
Q ss_pred CCCCCCC
Q 030931 103 KQDMKGA 109 (169)
Q Consensus 103 K~Dl~~~ 109 (169)
|.|..+.
T Consensus 201 K~D~~~~ 207 (240)
T smart00053 201 KLDLMDE 207 (240)
T ss_pred CCCCCCc
Confidence 9998653
No 361
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.29 E-value=0.00073 Score=44.47 Aligned_cols=98 Identities=13% Similarity=0.062 Sum_probs=59.2
Q ss_pred ccCCCCCceeeeec----eeeeeeeeeEEEEE-EEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHH
Q 030931 4 VKQPYCTSCTLVKF----YLLFLLLVRFNVEK-VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGK 78 (169)
Q Consensus 4 ~~~~~~Ktsll~~f----~~~~~~t~~~~~~~-~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~ 78 (169)
.|+|+|||++-..+ ......+.-++.-. ...-.+.+.++|+|+.. .......+..+|.++++.+.+ ..++..
T Consensus 7 ~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~-~~s~~~ 83 (139)
T cd02038 7 GKGGVGKTNISANLALALAKLGKRVLLLDADLGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE-PTSITD 83 (139)
T ss_pred CCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC-hhHHHH
Confidence 48999999987744 22222222221110 00012778999999853 334456788999999999874 344554
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 030931 79 AKQEFQAIIKDPFMLNSVILVFANKQDM 106 (169)
Q Consensus 79 ~~~~~~~~~~~~~~~~~piivv~nK~Dl 106 (169)
....++.+.+.. ...++.++.|+.+.
T Consensus 84 ~~~~l~~l~~~~--~~~~~~lVvN~~~~ 109 (139)
T cd02038 84 AYALIKKLAKQL--RVLNFRVVVNRAES 109 (139)
T ss_pred HHHHHHHHHHhc--CCCCEEEEEeCCCC
Confidence 444444443322 35578899999974
No 362
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.22 E-value=0.00097 Score=50.77 Aligned_cols=70 Identities=14% Similarity=0.010 Sum_probs=47.5
Q ss_pred ccccCCCCCceeeeeceee--------eeeeeeEEEEEEEEC-----------------CEEEEEEEcCCCCC-------
Q 030931 2 LRVKQPYCTSCTLVKFYLL--------FLLLVRFNVEKVQYK-----------------NVIFTVWDVGGQEK------- 49 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~--------~~~t~~~~~~~~~~~-----------------~~~~~i~D~~G~~~------- 49 (169)
|.+.+.+|||||++.++.. ++.|+..+...+... ...+.+.|+||.-.
T Consensus 7 ivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs~g~G 86 (368)
T TIGR00092 7 IVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGASKGEG 86 (368)
T ss_pred EECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchhcccC
Confidence 4678999999999976322 333455444444432 34689999999533
Q ss_pred chhhHHhhccCCCEEEEEEECC
Q 030931 50 LRPLWRHYFNNTDGLIYVVDSL 71 (169)
Q Consensus 50 ~~~~~~~~~~~~~~ii~v~d~~ 71 (169)
.....-..++.+|++++|+|..
T Consensus 87 lgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 87 LGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cchHHHHHHHhCCEEEEEEeCC
Confidence 2223445678999999999985
No 363
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.12 E-value=0.0078 Score=45.83 Aligned_cols=105 Identities=17% Similarity=0.133 Sum_probs=61.7
Q ss_pred CEEEEEEEcCCCCCchhhHHhhcc--CCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--
Q 030931 36 NVIFTVWDVGGQEKLRPLWRHYFN--NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-- 111 (169)
Q Consensus 36 ~~~~~i~D~~G~~~~~~~~~~~~~--~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-- 111 (169)
..-+.++|.+|+.+|....-..+. ..|..++|+.+...-.- ..++.+-.++. -++|.+++.+|+|+.+.-.
T Consensus 248 SKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~-tTrEHLgl~~A----L~iPfFvlvtK~Dl~~~~~~~ 322 (591)
T KOG1143|consen 248 SKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITW-TTREHLGLIAA----LNIPFFVLVTKMDLVDRQGLK 322 (591)
T ss_pred cceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcc-ccHHHHHHHHH----hCCCeEEEEEeeccccchhHH
Confidence 345889999999988765544443 25778888877532110 11111212211 2799999999999976421
Q ss_pred --HhHHHhhhCCC---------------------CCCCceeEEEEeeeccCCCHHHH
Q 030931 112 --PMEVCEGLGLF---------------------DLKNRKWHIQGTCALKGDGLYEG 145 (169)
Q Consensus 112 --~~~~~~~~~~~---------------------~~~~~~~~~~~~Sa~~~~gi~~~ 145 (169)
..++++.+... .....-.|+|.+|+.+|+|+.-+
T Consensus 323 ~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll 379 (591)
T KOG1143|consen 323 KTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLL 379 (591)
T ss_pred HHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHH
Confidence 22333322211 11123368999999999996543
No 364
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.12 E-value=0.002 Score=55.68 Aligned_cols=107 Identities=14% Similarity=0.139 Sum_probs=62.4
Q ss_pred CccccCCCCCceeeee----c--e--eeeeeeeeEEEEEEEE-CCEEEEEEEcCCCCCc--------hhhHHhh------
Q 030931 1 MLRVKQPYCTSCTLVK----F--Y--LLFLLLVRFNVEKVQY-KNVIFTVWDVGGQEKL--------RPLWRHY------ 57 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~----f--~--~~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~--------~~~~~~~------ 57 (169)
|+++.+|+||||++.. | . .....+.+..+..+++ -.-.--++||+|.+.- ...|..+
T Consensus 129 ~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~gT~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lLkk 208 (1188)
T COG3523 129 MVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPGTRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLLKK 208 (1188)
T ss_pred EEecCCCCCcchHHhcccccCcchhhhccccccCCCCcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHHHHH
Confidence 6889999999999983 3 1 1111111122344444 2334667899985432 2344433
Q ss_pred ---ccCCCEEEEEEECCChhh----H-----HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030931 58 ---FNNTDGLIYVVDSLDRER----I-----GKAKQEFQAIIKDPFMLNSVILVFANKQDMKG 108 (169)
Q Consensus 58 ---~~~~~~ii~v~d~~~~~~----~-----~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 108 (169)
.+..+|||+..|+.+.-+ . ..++.-++++.. ...-..|+.+++||.|+..
T Consensus 209 ~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~-tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 209 YRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRE-TLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred hccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHH-hhccCCceEEEEecccccc
Confidence 346799999999864221 1 112222334422 2224799999999999853
No 365
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.09 E-value=0.0013 Score=40.88 Aligned_cols=76 Identities=13% Similarity=0.061 Sum_probs=47.5
Q ss_pred cCCCCCceeeeeceeeeeeeeeEEEEEEEE-CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHH
Q 030931 5 KQPYCTSCTLVKFYLLFLLLVRFNVEKVQY-KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEF 83 (169)
Q Consensus 5 ~~~~~Ktsll~~f~~~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~ 83 (169)
|+|+|||++...+..... ..+..+..++. ..+.+.++|+|+.... .....+..+|.++++.+. +..++.....++
T Consensus 8 kgG~Gkst~~~~la~~~~-~~~~~vl~~d~d~~~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~~-~~~s~~~~~~~~ 83 (104)
T cd02042 8 KGGVGKTTTAVNLAAALA-RRGKRVLLIDLDPQYDYIIIDTPPSLGL--LTRNALAAADLVLIPVQP-SPLDLDGLEKLL 83 (104)
T ss_pred CCCcCHHHHHHHHHHHHH-hCCCcEEEEeCCCCCCEEEEeCcCCCCH--HHHHHHHHCCEEEEeccC-CHHHHHHHHHHH
Confidence 899999998774411111 12222333322 2377899999987532 334677889999999987 445566665554
Q ss_pred H
Q 030931 84 Q 84 (169)
Q Consensus 84 ~ 84 (169)
+
T Consensus 84 ~ 84 (104)
T cd02042 84 E 84 (104)
T ss_pred H
Confidence 4
No 366
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=96.98 E-value=0.0031 Score=48.24 Aligned_cols=120 Identities=18% Similarity=0.153 Sum_probs=73.8
Q ss_pred eeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh---hhHHH---HHHHHHHHhcCCCCCCCe
Q 030931 23 LLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR---ERIGK---AKQEFQAIIKDPFMLNSV 96 (169)
Q Consensus 23 ~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~---~~~~~---~~~~~~~~~~~~~~~~~p 96 (169)
-|+++....++....++.|.|.|||..|-...-.-..+||..++|+.+... ..|+. .+.... +. ....-..
T Consensus 143 KtvEvGrA~FEte~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~-La--kt~gv~~ 219 (501)
T KOG0459|consen 143 KTVEVGRAYFETENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAM-LA--KTAGVKH 219 (501)
T ss_pred ceeeeeeEEEEecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHH-HH--Hhhccce
Confidence 455555666777899999999999998876655566788999999877321 11211 111111 11 1123467
Q ss_pred EEEEEeCCCCCCCCC----HhHHHh-------hhCCCCCCCceeEEEEeeeccCCCHHHHHH
Q 030931 97 ILVFANKQDMKGAMT----PMEVCE-------GLGLFDLKNRKWHIQGTCALKGDGLYEGLD 147 (169)
Q Consensus 97 iivv~nK~Dl~~~~~----~~~~~~-------~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 147 (169)
.+++.||+|-+...- ..+..+ .++.. ......++++|..+|.++++...
T Consensus 220 lVv~vNKMddPtvnWs~eRy~E~~~k~~~fLr~~g~n--~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 220 LIVLINKMDDPTVNWSNERYEECKEKLQPFLRKLGFN--PKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred EEEEEEeccCCccCcchhhHHHHHHHHHHHHHHhccc--CCCCceeeecccccccchhhccc
Confidence 899999999754211 111111 11111 23345699999999999988654
No 367
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=96.96 E-value=0.0038 Score=44.67 Aligned_cols=102 Identities=12% Similarity=0.130 Sum_probs=55.1
Q ss_pred CccccCCCCCceeeeec-----e--------e-eeeeeeeEEEE--EEEEC--CEEEEEEEcCCCCC---chhhHH----
Q 030931 1 MLRVKQPYCTSCTLVKF-----Y--------L-LFLLLVRFNVE--KVQYK--NVIFTVWDVGGQEK---LRPLWR---- 55 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f-----~--------~-~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~---~~~~~~---- 55 (169)
|+.+..|.|||||+|.+ . . -+..|..+... .+..+ ..++++.||||-.. ....|.
T Consensus 50 MVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWePI~k 129 (336)
T KOG1547|consen 50 MVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWEPIEK 129 (336)
T ss_pred EEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhHHHHH
Confidence 66778999999999953 0 0 11223333322 23334 45677889999322 122222
Q ss_pred -------hhcc--------------CCCEEEEEEECCChhhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030931 56 -------HYFN--------------NTDGLIYVVDSLDRERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKG 108 (169)
Q Consensus 56 -------~~~~--------------~~~~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~ 108 (169)
.|++ ..+++++.+..+... +.-+. +.++.+. .-.-++-|+-|.|-..
T Consensus 130 yIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhs-LrplDieflkrLt-----~vvNvvPVIakaDtlT 198 (336)
T KOG1547|consen 130 YINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHS-LRPLDIEFLKRLT-----EVVNVVPVIAKADTLT 198 (336)
T ss_pred HHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCc-cCcccHHHHHHHh-----hhheeeeeEeeccccc
Confidence 2222 468888888776432 21111 1222221 2345778888999653
No 368
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=96.91 E-value=0.0056 Score=46.02 Aligned_cols=77 Identities=21% Similarity=0.086 Sum_probs=42.8
Q ss_pred CCCEEEEEEECCChhhHHH-HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeecc
Q 030931 60 NTDGLIYVVDSLDRERIGK-AKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALK 138 (169)
Q Consensus 60 ~~~~ii~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 138 (169)
..|++|-|+|+.+...... +.+...+.+... =++++||.|+.++...+.+...+... +-..+++.+|. .
T Consensus 116 ~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A------D~ivlNK~Dlv~~~~l~~l~~~l~~l---np~A~i~~~~~-~ 185 (323)
T COG0523 116 RLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA------DVIVLNKTDLVDAEELEALEARLRKL---NPRARIIETSY-G 185 (323)
T ss_pred eeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC------cEEEEecccCCCHHHHHHHHHHHHHh---CCCCeEEEccc-c
Confidence 3588999999876544332 445555554432 47889999997654333333333211 22345777776 3
Q ss_pred CCCHHHHH
Q 030931 139 GDGLYEGL 146 (169)
Q Consensus 139 ~~gi~~~~ 146 (169)
+....+++
T Consensus 186 ~~~~~~ll 193 (323)
T COG0523 186 DVDLAELL 193 (323)
T ss_pred CCCHHHhh
Confidence 33344333
No 369
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=96.89 E-value=0.00038 Score=51.18 Aligned_cols=44 Identities=9% Similarity=-0.062 Sum_probs=28.3
Q ss_pred CccccCCCCCceeeeeceeee--------eeeeeEEEEEEEECCEEEEEEEcCCC
Q 030931 1 MLRVKQPYCTSCTLVKFYLLF--------LLLVRFNVEKVQYKNVIFTVWDVGGQ 47 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f~~~~--------~~t~~~~~~~~~~~~~~~~i~D~~G~ 47 (169)
++++-+++|||||+|++.... ..|... ..+..+. .+.++||||.
T Consensus 122 ~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~-~~~l~DtPG~ 173 (276)
T TIGR03596 122 MIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQ--QWIKLSD-GLELLDTPGI 173 (276)
T ss_pred EEECCCCCCHHHHHHHHhCCCccccCCCCCeecce--EEEEeCC-CEEEEECCCc
Confidence 356789999999999874322 222222 2233322 5799999997
No 370
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.86 E-value=0.0047 Score=46.89 Aligned_cols=76 Identities=18% Similarity=0.205 Sum_probs=49.0
Q ss_pred EEEEEEcCCCCC-----------chhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 030931 38 IFTVWDVGGQEK-----------LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 106 (169)
Q Consensus 38 ~~~i~D~~G~~~-----------~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl 106 (169)
.++|+||||.-. |......+...+|.|+++||....+--++....+..+.. ..=.+-+|.||.|.
T Consensus 148 ~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG----~EdkiRVVLNKADq 223 (532)
T KOG1954|consen 148 SVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG----HEDKIRVVLNKADQ 223 (532)
T ss_pred heeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC----CcceeEEEeccccc
Confidence 489999999433 344455677899999999998654322333333444422 23457889999997
Q ss_pred CCCCCHhHHHhhhC
Q 030931 107 KGAMTPMEVCEGLG 120 (169)
Q Consensus 107 ~~~~~~~~~~~~~~ 120 (169)
. +.+++...++
T Consensus 224 V---dtqqLmRVyG 234 (532)
T KOG1954|consen 224 V---DTQQLMRVYG 234 (532)
T ss_pred c---CHHHHHHHHH
Confidence 5 4455555544
No 371
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.84 E-value=0.0027 Score=38.31 Aligned_cols=93 Identities=12% Similarity=-0.058 Sum_probs=52.7
Q ss_pred ccCCCCCceeeeeceeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhh-HHhhccCCCEEEEEEECCChhhHHHHHHH
Q 030931 4 VKQPYCTSCTLVKFYLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPL-WRHYFNNTDGLIYVVDSLDRERIGKAKQE 82 (169)
Q Consensus 4 ~~~~~~Ktsll~~f~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-~~~~~~~~~~ii~v~d~~~~~~~~~~~~~ 82 (169)
++.|+|||++...+...... .+..+..++ .+.+.|+++....... .......++.++++++... .+.......
T Consensus 6 g~~G~Gktt~~~~l~~~l~~-~g~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~~~~~~~~~ 79 (99)
T cd01983 6 GKGGVGKTTLAANLAAALAK-RGKRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEA-LAVLGARRL 79 (99)
T ss_pred CCCCCCHHHHHHHHHHHHHH-CCCeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCch-hhHHHHHHH
Confidence 46799999998865222211 233333333 7899999987543321 1456678999999998743 344444433
Q ss_pred HHHHhcCCCCCCCeEEEEEe
Q 030931 83 FQAIIKDPFMLNSVILVFAN 102 (169)
Q Consensus 83 ~~~~~~~~~~~~~piivv~n 102 (169)
.+...........+..++.|
T Consensus 80 ~~~~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 80 TEVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred HHHHHHhhccCCceEEEEeC
Confidence 32232222333555666554
No 372
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=96.76 E-value=0.00063 Score=50.34 Aligned_cols=45 Identities=9% Similarity=-0.130 Sum_probs=28.8
Q ss_pred CccccCCCCCceeeeecee--------eeeeeeeEEEEEEEECCEEEEEEEcCCCC
Q 030931 1 MLRVKQPYCTSCTLVKFYL--------LFLLLVRFNVEKVQYKNVIFTVWDVGGQE 48 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f~~--------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~ 48 (169)
++.+-+++|||||+|++.. .+..|.+.. .+..+ ..+.++||||..
T Consensus 125 ~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~~-~~~~l~DtPGi~ 177 (287)
T PRK09563 125 MIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQ--WIKLG-KGLELLDTPGIL 177 (287)
T ss_pred EEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEE--EEEeC-CcEEEEECCCcC
Confidence 3567899999999997732 222233332 22222 358899999964
No 373
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.74 E-value=0.0055 Score=46.02 Aligned_cols=94 Identities=13% Similarity=0.135 Sum_probs=52.2
Q ss_pred CCEEEEEEEcCCCCCchhh----HHh---h-----ccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 030931 35 KNVIFTVWDVGGQEKLRPL----WRH---Y-----FNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFAN 102 (169)
Q Consensus 35 ~~~~~~i~D~~G~~~~~~~----~~~---~-----~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~n 102 (169)
.++.+.+.||||....... ... . -...+..++|.|++.. .+.+.+ ...+.+. -.+.-++.|
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~-a~~f~~~----~~~~giIlT 267 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNALSQ-AKAFHEA----VGLTGIILT 267 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHHHHH-HHHHHhh----CCCCEEEEE
Confidence 4577999999997543221 111 1 1246788999999742 223222 2222211 135678999
Q ss_pred CCCCCCCCCH--hHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHH
Q 030931 103 KQDMKGAMTP--MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL 146 (169)
Q Consensus 103 K~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 146 (169)
|.|... .-. -.+.... +.|+..++ +|++++++-
T Consensus 268 KlD~t~-~~G~~l~~~~~~--------~~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 268 KLDGTA-KGGVVFAIADEL--------GIPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred CCCCCC-CccHHHHHHHHH--------CCCEEEEe--CCCChhhCc
Confidence 999532 221 2222222 34567776 888887653
No 374
>COG1161 Predicted GTPases [General function prediction only]
Probab=96.73 E-value=0.0037 Score=47.08 Aligned_cols=94 Identities=17% Similarity=0.087 Sum_probs=60.7
Q ss_pred EcCCCC-CchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCC
Q 030931 43 DVGGQE-KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGL 121 (169)
Q Consensus 43 D~~G~~-~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~ 121 (169)
+.+|+. ++.......+..+|+++-|+|+.++.+-... .+..+.+ +.|.++|+||+|+.+........+.+..
T Consensus 16 ~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~--~l~~~v~-----~k~~i~vlNK~DL~~~~~~~~W~~~~~~ 88 (322)
T COG1161 16 WFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNP--ELERIVK-----EKPKLLVLNKADLAPKEVTKKWKKYFKK 88 (322)
T ss_pred CCCCchHHHHHHHHHhcccCCEEEEEEeccccccccCc--cHHHHHc-----cCCcEEEEehhhcCCHHHHHHHHHHHHh
Confidence 446664 3455666788899999999999877544322 2344433 4556999999999764333444444432
Q ss_pred CCCCCceeEEEEeeeccCCCHHHHHH
Q 030931 122 FDLKNRKWHIQGTCALKGDGLYEGLD 147 (169)
Q Consensus 122 ~~~~~~~~~~~~~Sa~~~~gi~~~~~ 147 (169)
..+...+.++++.+.+...+..
T Consensus 89 ----~~~~~~~~v~~~~~~~~~~i~~ 110 (322)
T COG1161 89 ----EEGIKPIFVSAKSRQGGKKIRK 110 (322)
T ss_pred ----cCCCccEEEEeecccCccchHH
Confidence 1144468888888887776664
No 375
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.73 E-value=0.0024 Score=49.71 Aligned_cols=65 Identities=20% Similarity=0.133 Sum_probs=38.2
Q ss_pred CEEEEEEEcCCCCCchhhHHh----h--ccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030931 36 NVIFTVWDVGGQEKLRPLWRH----Y--FNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 107 (169)
Q Consensus 36 ~~~~~i~D~~G~~~~~~~~~~----~--~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 107 (169)
++.+.|+||+|.......... + ....+-+++|+|+.-...-... ...+.+ .-.+--++.||.|-.
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~---a~~F~~----~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQ---AKAFKD----SVDVGSVIITKLDGH 252 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHH---HHHHHh----ccCCcEEEEECccCC
Confidence 578999999997644322111 1 2256889999998643222222 222211 123677889999963
No 376
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=96.72 E-value=0.0016 Score=48.58 Aligned_cols=69 Identities=17% Similarity=0.157 Sum_probs=47.4
Q ss_pred cccCCCCCceeeeec-------eeeeeeeeeEEEEEEEE-----------------CCEEEEEEEcCCCCC-------ch
Q 030931 3 RVKQPYCTSCTLVKF-------YLLFLLLVRFNVEKVQY-----------------KNVIFTVWDVGGQEK-------LR 51 (169)
Q Consensus 3 ~~~~~~~Ktsll~~f-------~~~~~~t~~~~~~~~~~-----------------~~~~~~i~D~~G~~~-------~~ 51 (169)
.+.+.+||||++|.+ .+-++.|+..+...+.. -...++++|++|.-+ ..
T Consensus 26 VGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs~G~GLG 105 (391)
T KOG1491|consen 26 VGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGASAGEGLG 105 (391)
T ss_pred eeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCcccCcCch
Confidence 468999999999966 23455666655444333 246799999988322 23
Q ss_pred hhHHhhccCCCEEEEEEECC
Q 030931 52 PLWRHYFNNTDGLIYVVDSL 71 (169)
Q Consensus 52 ~~~~~~~~~~~~ii~v~d~~ 71 (169)
...-..++.+|+++-|+++.
T Consensus 106 N~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 106 NKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred HHHHHhhhhccceeEEEEec
Confidence 33445678899999999875
No 377
>PRK12288 GTPase RsgA; Reviewed
Probab=96.69 E-value=0.00082 Score=51.02 Aligned_cols=48 Identities=6% Similarity=-0.034 Sum_probs=29.4
Q ss_pred CccccCCCCCceeeeeceeeeee---------------eeeEEEEEEEECCEEEEEEEcCCCCCch
Q 030931 1 MLRVKQPYCTSCTLVKFYLLFLL---------------LVRFNVEKVQYKNVIFTVWDVGGQEKLR 51 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f~~~~~~---------------t~~~~~~~~~~~~~~~~i~D~~G~~~~~ 51 (169)
++++.+|+|||||+|++.+.... |.......+..++ .++||||-..+.
T Consensus 209 ~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~ 271 (347)
T PRK12288 209 IFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG 271 (347)
T ss_pred EEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence 36778999999999987433221 1122222222233 499999986654
No 378
>PRK14974 cell division protein FtsY; Provisional
Probab=96.59 E-value=0.0073 Score=45.67 Aligned_cols=96 Identities=16% Similarity=0.156 Sum_probs=52.1
Q ss_pred CEEEEEEEcCCCCCchh-hH---Hhh--ccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030931 36 NVIFTVWDVGGQEKLRP-LW---RHY--FNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA 109 (169)
Q Consensus 36 ~~~~~i~D~~G~~~~~~-~~---~~~--~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~ 109 (169)
++.+.+.||+|...... +. ... ....+..++|.|+..... .......+.+. -.+--++.||.|....
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d---~~~~a~~f~~~----~~~~giIlTKlD~~~~ 294 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGND---AVEQAREFNEA----VGIDGVILTKVDADAK 294 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchh---HHHHHHHHHhc----CCCCEEEEeeecCCCC
Confidence 46689999999764221 11 111 225788999999865322 11112222111 1246788999997432
Q ss_pred CC-HhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHH
Q 030931 110 MT-PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDW 148 (169)
Q Consensus 110 ~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 148 (169)
.- .-.+.... +.|+..++ +|++++++...
T Consensus 295 ~G~~ls~~~~~--------~~Pi~~i~--~Gq~v~Dl~~~ 324 (336)
T PRK14974 295 GGAALSIAYVI--------GKPILFLG--VGQGYDDLIPF 324 (336)
T ss_pred ccHHHHHHHHH--------CcCEEEEe--CCCChhhcccC
Confidence 11 11222222 23566666 79998776543
No 379
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.48 E-value=0.055 Score=36.50 Aligned_cols=129 Identities=15% Similarity=0.118 Sum_probs=66.2
Q ss_pred ccCCCCCceeeeec----eeeeeeeeeEEEEEEEEC--CEEEEEEEcC-CCCC---------------------ch----
Q 030931 4 VKQPYCTSCTLVKF----YLLFLLLVRFNVEKVQYK--NVIFTVWDVG-GQEK---------------------LR---- 51 (169)
Q Consensus 4 ~~~~~~Ktsll~~f----~~~~~~t~~~~~~~~~~~--~~~~~i~D~~-G~~~---------------------~~---- 51 (169)
+-+|+||||++.+. .+....-.|+....+..+ -.-|.|.|+. |.+. +.
T Consensus 12 G~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v~~le~i~~ 91 (179)
T COG1618 12 GRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNVEGLEEIAI 91 (179)
T ss_pred CCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeHHHHHHHhH
Confidence 57999999999975 333344445554444442 2446666665 2111 11
Q ss_pred hhHHhhccCCCEEEEEEECCChhhHHH----HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCc
Q 030931 52 PLWRHYFNNTDGLIYVVDSLDRERIGK----AKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNR 127 (169)
Q Consensus 52 ~~~~~~~~~~~~ii~v~d~~~~~~~~~----~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 127 (169)
......++.||.+|+ |= -..++. +...++++++ .+.|++.+..+.+.. + -.+++....
T Consensus 92 ~al~rA~~~aDvIII--DE--IGpMElks~~f~~~ve~vl~----~~kpliatlHrrsr~-P-~v~~ik~~~-------- 153 (179)
T COG1618 92 PALRRALEEADVIII--DE--IGPMELKSKKFREAVEEVLK----SGKPLIATLHRRSRH-P-LVQRIKKLG-------- 153 (179)
T ss_pred HHHHHHhhcCCEEEE--ec--ccchhhccHHHHHHHHHHhc----CCCcEEEEEecccCC-h-HHHHhhhcC--------
Confidence 112234456777665 43 233332 3344555544 467888888777641 1 112222111
Q ss_pred eeEEEEeeeccCCCHHHHHHHHHHHHH
Q 030931 128 KWHIQGTCALKGDGLYEGLDWLASTLK 154 (169)
Q Consensus 128 ~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 154 (169)
.-++. .+-+|=+.++..+.+.+.
T Consensus 154 -~v~v~---lt~~NR~~i~~~Il~~L~ 176 (179)
T COG1618 154 -GVYVF---LTPENRNRILNEILSVLK 176 (179)
T ss_pred -CEEEE---EccchhhHHHHHHHHHhc
Confidence 11333 555555577777777654
No 380
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=96.36 E-value=0.0086 Score=47.15 Aligned_cols=72 Identities=13% Similarity=0.104 Sum_probs=49.2
Q ss_pred hccCCCEEEEEEECCChhhHH--HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEe
Q 030931 57 YFNNTDGLIYVVDSLDRERIG--KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGT 134 (169)
Q Consensus 57 ~~~~~~~ii~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (169)
.+..+|++|.++|+.++-=|. ++..++.+.. +.+..+++.||.||..+.........+. +.++++++.
T Consensus 171 VlErSDivvqIVDARnPllfr~~dLe~Yvke~d-----~~K~~~LLvNKaDLl~~~qr~aWa~YF~-----~~ni~~vf~ 240 (562)
T KOG1424|consen 171 VLERSDIVVQIVDARNPLLFRSPDLEDYVKEVD-----PSKANVLLVNKADLLPPEQRVAWAEYFR-----QNNIPVVFF 240 (562)
T ss_pred HHhhcceEEEEeecCCccccCChhHHHHHhccc-----cccceEEEEehhhcCCHHHHHHHHHHHH-----hcCceEEEE
Confidence 578999999999998765443 3334444432 3577899999999976544444444443 344778888
Q ss_pred eecc
Q 030931 135 CALK 138 (169)
Q Consensus 135 Sa~~ 138 (169)
||..
T Consensus 241 SA~~ 244 (562)
T KOG1424|consen 241 SALA 244 (562)
T ss_pred eccc
Confidence 8886
No 381
>COG1161 Predicted GTPases [General function prediction only]
Probab=96.32 E-value=0.0012 Score=49.59 Aligned_cols=45 Identities=9% Similarity=-0.150 Sum_probs=28.3
Q ss_pred CccccCCCCCceeeeeceeeee--------eeeeEEEEEEEECCEEEEEEEcCCCC
Q 030931 1 MLRVKQPYCTSCTLVKFYLLFL--------LLVRFNVEKVQYKNVIFTVWDVGGQE 48 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f~~~~~--------~t~~~~~~~~~~~~~~~~i~D~~G~~ 48 (169)
++.+-+.+|||||+|++..... .|.+.....++ ..+.++||||.-
T Consensus 136 ~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~---~~i~LlDtPGii 188 (322)
T COG1161 136 GVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLD---DGIYLLDTPGII 188 (322)
T ss_pred EEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcC---CCeEEecCCCcC
Confidence 3567899999999998733322 22222222222 238999999953
No 382
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=96.22 E-value=0.011 Score=44.99 Aligned_cols=30 Identities=20% Similarity=0.123 Sum_probs=20.7
Q ss_pred CceeEEEEeeeccCCCHHHHHHHHHHHHHhh
Q 030931 126 NRKWHIQGTCALKGDGLYEGLDWLASTLKEM 156 (169)
Q Consensus 126 ~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (169)
.+-+++|.+|-.+|.|+. +++.....+..+
T Consensus 330 er~CPIFQvSNVtG~NL~-LLkmFLNlls~R 359 (641)
T KOG0463|consen 330 ERVCPIFQVSNVTGTNLP-LLKMFLNLLSLR 359 (641)
T ss_pred ccccceEEeccccCCChH-HHHHHHhhcCcc
Confidence 455789999999999964 445555544443
No 383
>PRK12289 GTPase RsgA; Reviewed
Probab=96.19 E-value=0.0017 Score=49.43 Aligned_cols=18 Identities=6% Similarity=0.004 Sum_probs=15.4
Q ss_pred CccccCCCCCceeeeece
Q 030931 1 MLRVKQPYCTSCTLVKFY 18 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f~ 18 (169)
++.+.+|+|||||+|.+.
T Consensus 176 v~iG~SgVGKSSLIN~L~ 193 (352)
T PRK12289 176 VVAGPSGVGKSSLINRLI 193 (352)
T ss_pred EEEeCCCCCHHHHHHHHc
Confidence 467799999999999874
No 384
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=96.18 E-value=0.13 Score=41.48 Aligned_cols=101 Identities=11% Similarity=0.135 Sum_probs=62.0
Q ss_pred CEEEEEEEcCCC-------------CCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 030931 36 NVIFTVWDVGGQ-------------EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFAN 102 (169)
Q Consensus 36 ~~~~~i~D~~G~-------------~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~n 102 (169)
--+..+.|.||. +....+...|..+.++||+|+-= .+.+.-+....++.......+...|+|.+
T Consensus 411 LqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQD---GSVDAERSnVTDLVsq~DP~GrRTIfVLT 487 (980)
T KOG0447|consen 411 LQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQD---GSVDAERSIVTDLVSQMDPHGRRTIFVLT 487 (980)
T ss_pred cceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEecc---CCcchhhhhHHHHHHhcCCCCCeeEEEEe
Confidence 356778899983 22445677889999999999832 12222222233444444556788999999
Q ss_pred CCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccC
Q 030931 103 KQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKG 139 (169)
Q Consensus 103 K~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 139 (169)
|.|+.+. .++..+.+.+.-.....+...||-+-.-.|
T Consensus 488 KVDlAEknlA~PdRI~kIleGKLFPMKALGYfaVVTGrG 526 (980)
T KOG0447|consen 488 KVDLAEKNVASPSRIQQIIEGKLFPMKALGYFAVVTGKG 526 (980)
T ss_pred ecchhhhccCCHHHHHHHHhcCccchhhcceeEEEecCC
Confidence 9999653 356666666654433444444666544434
No 385
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=96.15 E-value=0.002 Score=49.29 Aligned_cols=48 Identities=8% Similarity=0.054 Sum_probs=28.0
Q ss_pred CccccCCCCCceeeeeceeee-----eeeee------EEEEEEEECCEEEEEEEcCCCCC
Q 030931 1 MLRVKQPYCTSCTLVKFYLLF-----LLLVR------FNVEKVQYKNVIFTVWDVGGQEK 49 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f~~~~-----~~t~~------~~~~~~~~~~~~~~i~D~~G~~~ 49 (169)
++.+.+++|||||+|++.... .++.+ .....+..+ -.+.++||||-..
T Consensus 158 ~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~-~~~~l~DtPG~~~ 216 (360)
T TIGR03597 158 YVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLD-DGHSLYDTPGIIN 216 (360)
T ss_pred EEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeC-CCCEEEECCCCCC
Confidence 356799999999999763211 11222 112222321 2357999999654
No 386
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=96.10 E-value=0.0046 Score=48.75 Aligned_cols=67 Identities=18% Similarity=0.210 Sum_probs=48.4
Q ss_pred CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 030931 35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 106 (169)
Q Consensus 35 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl 106 (169)
.+.-++++|.|||-.|.+..-..++-.|+.+.|+|..+.--... ..-+.+.+. ..+..+++.||+|.
T Consensus 96 ~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQT-ETVLrQA~~----ERIkPvlv~NK~DR 162 (842)
T KOG0469|consen 96 NGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQT-ETVLRQAIA----ERIKPVLVMNKMDR 162 (842)
T ss_pred cceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEech-HHHHHHHHH----hhccceEEeehhhH
Confidence 46889999999999999999999999999999999865322211 112223322 23456778999995
No 387
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=96.03 E-value=0.057 Score=36.86 Aligned_cols=67 Identities=10% Similarity=0.078 Sum_probs=47.2
Q ss_pred CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030931 35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG 108 (169)
Q Consensus 35 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 108 (169)
+.+.+.+.|||+... ......+..+|.+++++..+. .+......+++.+.+ .+.|+.+|+||+|...
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~----~~~~~~vV~N~~~~~~ 157 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTP-SGLHDLERAVELVRH----FGIPVGVVINKYDLND 157 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHH----cCCCEEEEEeCCCCCc
Confidence 567899999997643 234456788999999998853 455555555554422 2467899999999753
No 388
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=96.01 E-value=0.0071 Score=45.47 Aligned_cols=66 Identities=20% Similarity=0.250 Sum_probs=35.3
Q ss_pred EEEEEEEcCCCCCchhhHHhhcc--------CCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030931 37 VIFTVWDVGGQEKLRPLWRHYFN--------NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG 108 (169)
Q Consensus 37 ~~~~i~D~~G~~~~~~~~~~~~~--------~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 108 (169)
....+.++.|...-..+...++. ..+++|.|+|+.+..............+.. -=+++.||+|+.+
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~------AD~IvlnK~Dl~~ 164 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY------ADRILLTKTDVAG 164 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh------CCEEEEeccccCC
Confidence 34566777776544333333221 248899999986533221111122222221 2467899999865
No 389
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=95.96 E-value=0.0029 Score=45.74 Aligned_cols=46 Identities=7% Similarity=-0.044 Sum_probs=28.2
Q ss_pred CccccCCCCCceeeeeceeeee---------------eeeeEEEEEEEECCEEEEEEEcCCCCCc
Q 030931 1 MLRVKQPYCTSCTLVKFYLLFL---------------LLVRFNVEKVQYKNVIFTVWDVGGQEKL 50 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f~~~~~---------------~t~~~~~~~~~~~~~~~~i~D~~G~~~~ 50 (169)
++.+.+|+|||||+|++.+... +|.......+ .+ ..++||||-..+
T Consensus 124 ~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l--~~--~~liDtPG~~~~ 184 (245)
T TIGR00157 124 VFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF--HG--GLIADTPGFNEF 184 (245)
T ss_pred EEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc--CC--cEEEeCCCcccc
Confidence 3567899999999998733211 1222222223 22 379999997543
No 390
>PRK13796 GTPase YqeH; Provisional
Probab=95.94 E-value=0.0026 Score=48.67 Aligned_cols=17 Identities=6% Similarity=-0.097 Sum_probs=14.8
Q ss_pred ccccCCCCCceeeeece
Q 030931 2 LRVKQPYCTSCTLVKFY 18 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~ 18 (169)
+.+.+++|||||+|++.
T Consensus 165 vvG~~NvGKSTLiN~L~ 181 (365)
T PRK13796 165 VVGVTNVGKSTLINRII 181 (365)
T ss_pred EEcCCCCcHHHHHHHHH
Confidence 56789999999999873
No 391
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=95.94 E-value=0.0019 Score=47.85 Aligned_cols=49 Identities=12% Similarity=-0.054 Sum_probs=28.7
Q ss_pred ccccCCCCCceeeeeceeeeeeeee-EE------------EEEEEECCEEEEEEEcCCCCCch
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR-FN------------VEKVQYKNVIFTVWDVGGQEKLR 51 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~-~~------------~~~~~~~~~~~~i~D~~G~~~~~ 51 (169)
+++..|+|||||+|.+.....++.| +. ...+.... ...++||||...+.
T Consensus 166 ~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~-~~~liDtPG~~~~~ 227 (287)
T cd01854 166 LVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPG-GGLLIDTPGFREFG 227 (287)
T ss_pred EECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCC-CCEEEECCCCCccC
Confidence 5678999999999977443332222 10 11122211 23589999986543
No 392
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=95.92 E-value=0.039 Score=42.86 Aligned_cols=71 Identities=14% Similarity=0.158 Sum_probs=38.5
Q ss_pred CCEEEEEEECC----ChhhHHHHHH-HHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEee
Q 030931 61 TDGLIYVVDSL----DRERIGKAKQ-EFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTC 135 (169)
Q Consensus 61 ~~~ii~v~d~~----~~~~~~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 135 (169)
.=|+++.-|.+ .++.+....+ -+.++.. -++|.+++.|-.+-.. ....++...+. .+++.+.+.++
T Consensus 146 TIGiVVTTDGSi~dipRe~Y~eAEervI~ELk~----igKPFvillNs~~P~s-~et~~L~~eL~----ekY~vpVlpvn 216 (492)
T PF09547_consen 146 TIGIVVTTDGSITDIPRENYVEAEERVIEELKE----IGKPFVILLNSTKPYS-EETQELAEELE----EKYDVPVLPVN 216 (492)
T ss_pred ceeEEEecCCCccCCChHHHHHHHHHHHHHHHH----hCCCEEEEEeCCCCCC-HHHHHHHHHHH----HHhCCcEEEee
Confidence 34555555654 2344443332 3333322 3789999999987432 22233333332 45667788877
Q ss_pred eccCC
Q 030931 136 ALKGD 140 (169)
Q Consensus 136 a~~~~ 140 (169)
+..-.
T Consensus 217 c~~l~ 221 (492)
T PF09547_consen 217 CEQLR 221 (492)
T ss_pred hHHcC
Confidence 76443
No 393
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=95.92 E-value=0.045 Score=42.12 Aligned_cols=92 Identities=13% Similarity=0.070 Sum_probs=51.2
Q ss_pred hhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEee
Q 030931 56 HYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTC 135 (169)
Q Consensus 56 ~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 135 (169)
-.+..+|++|-|.|+.|+- ..-...++.+++.. .+...+++|+||+||...--.......+... +..--|-.|
T Consensus 209 KViDSSDVvvqVlDARDPm--GTrc~~ve~ylkke-~phKHli~vLNKvDLVPtwvt~~Wv~~lSke----yPTiAfHAs 281 (572)
T KOG2423|consen 209 KVIDSSDVVVQVLDARDPM--GTRCKHVEEYLKKE-KPHKHLIYVLNKVDLVPTWVTAKWVRHLSKE----YPTIAFHAS 281 (572)
T ss_pred HhhcccceeEEeeeccCCc--ccccHHHHHHHhhc-CCcceeEEEeeccccccHHHHHHHHHHHhhh----Ccceeeehh
Confidence 3456899999999997753 22223344555432 3678999999999996532223333333321 111235556
Q ss_pred eccCCCHHHHHHHHHHHHHh
Q 030931 136 ALKGDGLYEGLDWLASTLKE 155 (169)
Q Consensus 136 a~~~~gi~~~~~~l~~~~~~ 155 (169)
-.+..|=..++ .+.+++.+
T Consensus 282 i~nsfGKgalI-~llRQf~k 300 (572)
T KOG2423|consen 282 INNSFGKGALI-QLLRQFAK 300 (572)
T ss_pred hcCccchhHHH-HHHHHHHh
Confidence 55556633333 33443333
No 394
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=95.82 E-value=0.022 Score=40.67 Aligned_cols=102 Identities=12% Similarity=0.052 Sum_probs=60.8
Q ss_pred CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh--hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh
Q 030931 36 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR--ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM 113 (169)
Q Consensus 36 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~ 113 (169)
++.+-+.|+.|.... .....+..+|.+|+=.-.+.. ..-.....|+.+..+ ...+++|.-++.|+++........
T Consensus 83 ~~d~VlvDleG~as~--~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~-~~~~~ip~~Vl~Tr~~~~~~~~~~ 159 (231)
T PF07015_consen 83 GFDFVLVDLEGGASE--LNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEK-AERRDIPAAVLFTRVPAARLTRAQ 159 (231)
T ss_pred CCCEEEEeCCCCCch--hHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHH-hhCCCCCeeEEEecCCcchhhHHH
Confidence 467899999987532 345567789999986655422 222233345555543 223579999999999743211111
Q ss_pred HH-HhhhCCCCCCCceeEEEEeeeccCCCHHHHHH
Q 030931 114 EV-CEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD 147 (169)
Q Consensus 114 ~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 147 (169)
.. .+.+. .+|++.+.-.......++|.
T Consensus 160 ~~~~e~~~-------~lpvl~t~l~eR~Af~~m~~ 187 (231)
T PF07015_consen 160 RIISEQLE-------SLPVLDTELHERDAFRAMFS 187 (231)
T ss_pred HHHHHHHh-------cCCccccccccHHHHHHHHH
Confidence 12 22221 25678888777776666665
No 395
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.68 E-value=0.00084 Score=45.23 Aligned_cols=19 Identities=11% Similarity=-0.031 Sum_probs=15.5
Q ss_pred CccccCCCCCceeeeecee
Q 030931 1 MLRVKQPYCTSCTLVKFYL 19 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f~~ 19 (169)
+|.+..|+|||||+|.+.+
T Consensus 39 vl~G~SGvGKSSLiN~L~~ 57 (161)
T PF03193_consen 39 VLLGQSGVGKSSLINALLP 57 (161)
T ss_dssp EEECSTTSSHHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHHh
Confidence 3567899999999998743
No 396
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=95.41 E-value=0.15 Score=38.84 Aligned_cols=86 Identities=16% Similarity=0.203 Sum_probs=64.5
Q ss_pred CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH
Q 030931 35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME 114 (169)
Q Consensus 35 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~ 114 (169)
+.+.+.++|.| + ....-...++..+|-+++|++. +-.+....+++++.+.+ ....+.+..+++||.+.....+..+
T Consensus 216 ~~~~~vV~Dlp-~-~~~~~t~~vL~~Sd~iviv~e~-sl~slR~ak~lld~l~~-~r~~~~~p~lv~n~~~~~~~~~~~d 291 (366)
T COG4963 216 GSFDFVVVDLP-N-IWTDWTRQVLSGSDEIVIVAEP-SLASLRNAKELLDELKR-LRPNDPKPILVLNRVGVPKRPEPSD 291 (366)
T ss_pred ccCCeEEEcCC-C-ccchHHHHHHhcCCeEEEEecc-cHHHHHHHHHHHHHHHH-hCCCCCCceEEeeecCCCCCCCHHH
Confidence 47889999999 3 2344556789999999999987 44566677777777644 3446788999999999877666777
Q ss_pred HHhhhCCCCC
Q 030931 115 VCEGLGLFDL 124 (169)
Q Consensus 115 ~~~~~~~~~~ 124 (169)
+...+++...
T Consensus 292 l~~~~~i~~~ 301 (366)
T COG4963 292 LEEILGIESL 301 (366)
T ss_pred HHHHhCCchh
Confidence 8887776644
No 397
>COG1162 Predicted GTPases [General function prediction only]
Probab=95.31 E-value=0.0078 Score=44.50 Aligned_cols=18 Identities=11% Similarity=-0.073 Sum_probs=14.9
Q ss_pred ccccCCCCCceeeeecee
Q 030931 2 LRVKQPYCTSCTLVKFYL 19 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~ 19 (169)
+.+-.|+|||||+|++.+
T Consensus 169 l~GqSGVGKSSLiN~L~p 186 (301)
T COG1162 169 LLGQSGVGKSTLINALLP 186 (301)
T ss_pred EECCCCCcHHHHHHhhCc
Confidence 456789999999998844
No 398
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=95.28 E-value=0.062 Score=43.30 Aligned_cols=128 Identities=10% Similarity=-0.064 Sum_probs=72.7
Q ss_pred cccCCCCCceeeeec----eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHH
Q 030931 3 RVKQPYCTSCTLVKF----YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGK 78 (169)
Q Consensus 3 ~~~~~~~Ktsll~~f----~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~ 78 (169)
.+-+|.|||||+..+ +......+.=.+..+..+..++.+.++|.. ...+ -...+=||.+++.+|..-.-.++.
T Consensus 75 vGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~RRiTflEcp~D--l~~m-iDvaKIaDLVlLlIdgnfGfEMET 151 (1077)
T COG5192 75 VGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRITFLECPSD--LHQM-IDVAKIADLVLLLIDGNFGFEMET 151 (1077)
T ss_pred ecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeecceeEEEEEeChHH--HHHH-HhHHHhhheeEEEeccccCceehH
Confidence 457899999999854 333222222223445567889999999932 2332 234566899999999853322221
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC-CCHhHHHhhhCCCCC--CCceeEEEEeeec
Q 030931 79 AKQEFQAIIKDPFMLNSVILVFANKQDMKGA-MTPMEVCEGLGLFDL--KNRKWHIQGTCAL 137 (169)
Q Consensus 79 ~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~Sa~ 137 (169)
..++. ++.... -..++-|+++.|+... .......+.+.-..+ -..+...|..|..
T Consensus 152 -mEFLn-il~~HG--mPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV 209 (1077)
T COG5192 152 -MEFLN-ILISHG--MPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGV 209 (1077)
T ss_pred -HHHHH-HHhhcC--CCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEeccc
Confidence 22222 322221 2346778999999653 334555554443333 1345567777754
No 399
>PRK00098 GTPase RsgA; Reviewed
Probab=95.25 E-value=0.007 Score=45.08 Aligned_cols=18 Identities=17% Similarity=-0.062 Sum_probs=15.0
Q ss_pred ccccCCCCCceeeeecee
Q 030931 2 LRVKQPYCTSCTLVKFYL 19 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~ 19 (169)
+.+.+|+|||||+|.+.+
T Consensus 169 ~~G~sgvGKStlin~l~~ 186 (298)
T PRK00098 169 LAGQSGVGKSTLLNALAP 186 (298)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 567899999999998743
No 400
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.74 E-value=0.048 Score=43.77 Aligned_cols=66 Identities=9% Similarity=0.086 Sum_probs=36.5
Q ss_pred CCEEEEEEEcCCCCCchhhHHh---hcc--CCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030931 35 KNVIFTVWDVGGQEKLRPLWRH---YFN--NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 107 (169)
Q Consensus 35 ~~~~~~i~D~~G~~~~~~~~~~---~~~--~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 107 (169)
..+.+.|+||+|.......... .+. .....++|++.+. +.......++.+.. ..+.-+++||.|..
T Consensus 427 ~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~-----~~~~gvILTKlDEt 497 (559)
T PRK12727 427 RDYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAH-----AKPQGVVLTKLDET 497 (559)
T ss_pred ccCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHh-----hCCeEEEEecCcCc
Confidence 3577899999996533221110 011 1235667777653 33344444444422 24677999999974
No 401
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.65 E-value=0.097 Score=40.27 Aligned_cols=73 Identities=10% Similarity=0.129 Sum_probs=38.1
Q ss_pred CCEEEEEEEcCCCCCchhhHHh---hc---cCCCEEEEEEECCC-hhhHHHHHHHHHHHhcCCCCC-CCeEEEEEeCCCC
Q 030931 35 KNVIFTVWDVGGQEKLRPLWRH---YF---NNTDGLIYVVDSLD-RERIGKAKQEFQAIIKDPFML-NSVILVFANKQDM 106 (169)
Q Consensus 35 ~~~~~~i~D~~G~~~~~~~~~~---~~---~~~~~ii~v~d~~~-~~~~~~~~~~~~~~~~~~~~~-~~piivv~nK~Dl 106 (169)
.+..+.++||+|.......... .+ ....-.++|++.+. .+....+..-+.......... ..+-=++.+|.|-
T Consensus 214 ~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDE 293 (374)
T PRK14722 214 RNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDE 293 (374)
T ss_pred cCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEecccc
Confidence 3567899999997643322211 12 23345688888865 344444433333332111000 0134577899995
Q ss_pred C
Q 030931 107 K 107 (169)
Q Consensus 107 ~ 107 (169)
.
T Consensus 294 t 294 (374)
T PRK14722 294 A 294 (374)
T ss_pred C
Confidence 4
No 402
>KOG2484 consensus GTPase [General function prediction only]
Probab=94.43 E-value=0.09 Score=40.40 Aligned_cols=65 Identities=15% Similarity=0.099 Sum_probs=41.8
Q ss_pred chhhHHhhccCCCEEEEEEECCChhhH--HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhh
Q 030931 50 LRPLWRHYFNNTDGLIYVVDSLDRERI--GKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL 119 (169)
Q Consensus 50 ~~~~~~~~~~~~~~ii~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~ 119 (169)
|.......+..+|++|.|.|+.|+.+= .++..|+... ..+...|+|+||+|+......++....+
T Consensus 136 Y~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~-----~gnKkLILVLNK~DLVPrEv~e~Wl~YL 202 (435)
T KOG2484|consen 136 YDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQA-----HGNKKLILVLNKIDLVPREVVEKWLVYL 202 (435)
T ss_pred HHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhc-----cCCceEEEEeehhccCCHHHHHHHHHHH
Confidence 344455567789999999999887542 2333333221 1358899999999997554444444444
No 403
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=94.31 E-value=0.089 Score=33.85 Aligned_cols=20 Identities=5% Similarity=-0.267 Sum_probs=15.7
Q ss_pred ccccCCCCCceeeeeceeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLF 21 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~ 21 (169)
+.+.+|+|||+|++.+....
T Consensus 24 i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 24 LYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 56799999999999874433
No 404
>PRK13695 putative NTPase; Provisional
Probab=94.26 E-value=0.36 Score=32.78 Aligned_cols=16 Identities=6% Similarity=0.032 Sum_probs=13.4
Q ss_pred ccccCCCCCceeeeec
Q 030931 2 LRVKQPYCTSCTLVKF 17 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f 17 (169)
|.+.+|+|||||+..+
T Consensus 5 ltG~~G~GKTTll~~i 20 (174)
T PRK13695 5 ITGPPGVGKTTLVLKI 20 (174)
T ss_pred EECCCCCCHHHHHHHH
Confidence 4568999999999974
No 405
>PF05729 NACHT: NACHT domain
Probab=94.03 E-value=0.063 Score=35.71 Aligned_cols=47 Identities=6% Similarity=0.225 Sum_probs=27.7
Q ss_pred HhhccCCCEEEEEEECCChhhH-------HHHHHHHHHHhcCCCCCCCeEEEEE
Q 030931 55 RHYFNNTDGLIYVVDSLDRERI-------GKAKQEFQAIIKDPFMLNSVILVFA 101 (169)
Q Consensus 55 ~~~~~~~~~ii~v~d~~~~~~~-------~~~~~~~~~~~~~~~~~~~piivv~ 101 (169)
........-+++++|.-|.-.- .....++..++.....++..+++..
T Consensus 74 ~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~ 127 (166)
T PF05729_consen 74 QELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITS 127 (166)
T ss_pred HHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEE
Confidence 3455677888899998654322 1233456566554334567766665
No 406
>PRK10867 signal recognition particle protein; Provisional
Probab=93.98 E-value=0.14 Score=40.22 Aligned_cols=64 Identities=19% Similarity=0.157 Sum_probs=35.4
Q ss_pred CEEEEEEEcCCCCCchhh-HH---hh--ccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 030931 36 NVIFTVWDVGGQEKLRPL-WR---HY--FNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 106 (169)
Q Consensus 36 ~~~~~i~D~~G~~~~~~~-~~---~~--~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl 106 (169)
++.+.|.||+|....... .. .+ .-..+.+++|+|.... .+.......+.+.. ...-++.||.|-
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~----~i~giIlTKlD~ 252 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEAL----GLTGVILTKLDG 252 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhC----CCCEEEEeCccC
Confidence 467999999996543221 11 11 1256788999998543 22223333332211 124566799995
No 407
>KOG3929 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.85 E-value=0.067 Score=38.90 Aligned_cols=73 Identities=16% Similarity=0.147 Sum_probs=41.8
Q ss_pred ccccCCCCCceeeeec-eeee---eeeeeEEEEE---EEEC--CEEEEEEEcCCCCCchhhHH-----hhccCCCEEEEE
Q 030931 2 LRVKQPYCTSCTLVKF-YLLF---LLLVRFNVEK---VQYK--NVIFTVWDVGGQEKLRPLWR-----HYFNNTDGLIYV 67 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-~~~~---~~t~~~~~~~---~~~~--~~~~~i~D~~G~~~~~~~~~-----~~~~~~~~ii~v 67 (169)
+++++.=|||++++++ .... .||....+.. ...+ +-..++|+.+|......+.. ..++ .-.+|++
T Consensus 48 I~~~Gn~~~tt~I~~~FdR~e~~~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l~-~~slIL~ 126 (363)
T KOG3929|consen 48 IGSKGNGGKTTIILRCFDRDEPPKPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTLR-TFSLILV 126 (363)
T ss_pred EEEecCCceeEeehhhcCcccCCCCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccchh-hhhheee
Confidence 4556777889999976 3333 3344333221 1111 23478999998765444322 1222 3457888
Q ss_pred EECCChhh
Q 030931 68 VDSLDRER 75 (169)
Q Consensus 68 ~d~~~~~~ 75 (169)
.|+++++.
T Consensus 127 LDls~p~~ 134 (363)
T KOG3929|consen 127 LDLSKPND 134 (363)
T ss_pred eecCChHH
Confidence 99998764
No 408
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=93.32 E-value=0.17 Score=37.76 Aligned_cols=106 Identities=14% Similarity=0.003 Sum_probs=60.0
Q ss_pred EEEEcCCCCCc-hhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhh
Q 030931 40 TVWDVGGQEKL-RPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEG 118 (169)
Q Consensus 40 ~i~D~~G~~~~-~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~ 118 (169)
..-+.|||..- ......-+...|.+|=|=|+.-+- ..-...+++++ +.+|-++|.||+||.++.....+.+.
T Consensus 25 ~~~wfpgHmakalr~i~~~l~~~D~iiEvrDaRiPL--ssrn~~~~~~~-----~~k~riiVlNK~DLad~~~~k~~iq~ 97 (335)
T KOG2485|consen 25 PRRWFPGHMAKALRAIQNRLPLVDCIIEVRDARIPL--SSRNELFQDFL-----PPKPRIIVLNKMDLADPKEQKKIIQY 97 (335)
T ss_pred ccccCchHHHHHHHHHHhhcccccEEEEeeccccCC--ccccHHHHHhc-----CCCceEEEEecccccCchhhhHHHHH
Confidence 34456776421 112334567899999998884332 22223344443 37899999999999876444445544
Q ss_pred hCCCCCCCceeEEEEeeeccCCC--HHHHHHHHHHHHHhh
Q 030931 119 LGLFDLKNRKWHIQGTCALKGDG--LYEGLDWLASTLKEM 156 (169)
Q Consensus 119 ~~~~~~~~~~~~~~~~Sa~~~~g--i~~~~~~l~~~~~~~ 156 (169)
+... ....|+..++....+ +..++..+.....+.
T Consensus 98 ~~~~----~~~~~~~~~c~~~~~~~v~~l~~il~~~~~~l 133 (335)
T KOG2485|consen 98 LEWQ----NLESYIKLDCNKDCNKQVSPLLKILTILSEEL 133 (335)
T ss_pred HHhh----cccchhhhhhhhhhhhccccHHHHHHHHHHHH
Confidence 4322 222355555444443 666666655544443
No 409
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=93.23 E-value=1.5 Score=32.36 Aligned_cols=95 Identities=13% Similarity=0.117 Sum_probs=52.8
Q ss_pred CCEEEEEEEcCCCCCchhhHH-------hhc-----cCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 030931 35 KNVIFTVWDVGGQEKLRPLWR-------HYF-----NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFAN 102 (169)
Q Consensus 35 ~~~~~~i~D~~G~~~~~~~~~-------~~~-----~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~n 102 (169)
.++.+.+.||||......... ... ..++..++|+|.+.. .+... ....+.+.. .+--++.|
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~-~~~~f~~~~----~~~g~IlT 225 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALE-QAKVFNEAV----GLTGIILT 225 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHH-HHHHHHhhC----CCCEEEEE
Confidence 457899999999765332211 111 238999999999642 22222 223332211 25688899
Q ss_pred CCCCCCCCC-HhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHH
Q 030931 103 KQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL 146 (169)
Q Consensus 103 K~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 146 (169)
|.|-....- .-.+.... +.|+.+++ +|++++++-
T Consensus 226 KlDe~~~~G~~l~~~~~~--------~~Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 226 KLDGTAKGGIILSIAYEL--------KLPIKFIG--VGEKIDDLA 260 (272)
T ss_pred ccCCCCCccHHHHHHHHH--------CcCEEEEe--CCCChHhCc
Confidence 999743211 12222222 23566666 788876653
No 410
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=93.20 E-value=0.35 Score=39.80 Aligned_cols=65 Identities=20% Similarity=0.308 Sum_probs=41.3
Q ss_pred EEEEEcCCCCC---chhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030931 39 FTVWDVGGQEK---LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG 108 (169)
Q Consensus 39 ~~i~D~~G~~~---~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 108 (169)
+.+.|.||..- ...-...++..+|++|+|..+.+..+... .+++...-+ ..+-++++-||.|...
T Consensus 208 ivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs~----~KpniFIlnnkwDasa 275 (749)
T KOG0448|consen 208 IVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVSE----EKPNIFILNNKWDASA 275 (749)
T ss_pred ceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhhc----cCCcEEEEechhhhhc
Confidence 56678888553 23334567789999999998866544333 334444422 2556777788889753
No 411
>PF14331 ImcF-related_N: ImcF-related N-terminal domain
Probab=93.19 E-value=0.63 Score=34.17 Aligned_cols=48 Identities=17% Similarity=0.237 Sum_probs=29.7
Q ss_pred CCCEEEEEEECCCh-----h--hHHH----HHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030931 60 NTDGLIYVVDSLDR-----E--RIGK----AKQEFQAIIKDPFMLNSVILVFANKQDMKG 108 (169)
Q Consensus 60 ~~~~ii~v~d~~~~-----~--~~~~----~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 108 (169)
..+|+|+++|+.+. . .+.. ++.-+.++.+ ...-..||.+++||+|+..
T Consensus 25 PlnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~-~lg~~~PVYvv~Tk~D~l~ 83 (266)
T PF14331_consen 25 PLNGVILTVSVDDLLNADEAERELEALARALRQRLEELQR-TLGVRLPVYVVFTKCDLLP 83 (266)
T ss_pred CCCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHH-HhCCCCCeEeeeECCCccc
Confidence 56999999998632 1 1222 2223333322 2224799999999999864
No 412
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=92.89 E-value=0.52 Score=33.90 Aligned_cols=45 Identities=24% Similarity=0.211 Sum_probs=29.6
Q ss_pred hccCCCEEEEEEECCChh--hHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030931 57 YFNNTDGLIYVVDSLDRE--RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 107 (169)
Q Consensus 57 ~~~~~~~ii~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 107 (169)
..+++|.+|+|+|.+-.. +-+.+.++..++ .=.++.+|.||.|-.
T Consensus 152 ~~~~vD~vivVvDpS~~sl~taeri~~L~~el------g~k~i~~V~NKv~e~ 198 (255)
T COG3640 152 TIEGVDLVIVVVDPSYKSLRTAERIKELAEEL------GIKRIFVVLNKVDEE 198 (255)
T ss_pred cccCCCEEEEEeCCcHHHHHHHHHHHHHHHHh------CCceEEEEEeeccch
Confidence 456899999999986431 222333333333 137999999999954
No 413
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=92.72 E-value=1.9 Score=28.99 Aligned_cols=65 Identities=11% Similarity=-0.041 Sum_probs=42.9
Q ss_pred EEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030931 38 IFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG 108 (169)
Q Consensus 38 ~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 108 (169)
.+.|+|+|+.... .....+..+|.+|++++.+. .++.....+++.+.. . ......++.|+.+...
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~-~--~~~~~~iv~N~~~~~~ 128 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEA-L--GIKVVGVIVNRVRPDM 128 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHH-c--CCceEEEEEeCCcccc
Confidence 6899999986433 34455688999999998743 445555554444422 1 2346778999998653
No 414
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.54 E-value=0.32 Score=38.17 Aligned_cols=65 Identities=9% Similarity=0.102 Sum_probs=35.6
Q ss_pred CEEEEEEEcCCCCCchh----hHHhhcc---CCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030931 36 NVIFTVWDVGGQEKLRP----LWRHYFN---NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 107 (169)
Q Consensus 36 ~~~~~i~D~~G~~~~~~----~~~~~~~---~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 107 (169)
.+.+.++||+|...... ....+++ ...-..+|++.+-. ...+.+.+..+-. . + +--++.||.|-.
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~-~---~-~~~vI~TKlDet 370 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSR-L---P-LDGLIFTKLDET 370 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCC-C---C-CCEEEEeccccc
Confidence 56789999999754431 1222333 23466778887532 2333333333311 1 1 236889999964
No 415
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=92.40 E-value=0.049 Score=37.24 Aligned_cols=58 Identities=9% Similarity=-0.026 Sum_probs=31.3
Q ss_pred cccCCCCCceeeeeceeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEE
Q 030931 3 RVKQPYCTSCTLVKFYLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY 66 (169)
Q Consensus 3 ~~~~~~~Ktsll~~f~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~ 66 (169)
.+..|||||||+.++..... ..+..+..+......+.+ |.+|.+.+ ...-.+|+.+++
T Consensus 12 vG~sgsGKTTLi~~li~~l~-~~g~~vg~Ik~~~~~~~~-d~~g~Ds~----~~r~aGA~~v~~ 69 (173)
T PRK10751 12 AAWSGTGKTTLLKKLIPALC-ARGIRPGLIKHTHHDMDV-DKPGKDSY----ELRKAGAAQTLV 69 (173)
T ss_pred ECCCCChHHHHHHHHHHHHh-hcCCeEEEEEEcCCCccc-CCCCcHHH----HHHHhCCcEEEE
Confidence 45789999999998744332 223334444443333444 67775432 222345555443
No 416
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.05 E-value=0.48 Score=36.60 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=26.5
Q ss_pred CCEEEEEEEcCCCCCch-hhHHh-----hccCCCEEEEEEECCChh
Q 030931 35 KNVIFTVWDVGGQEKLR-PLWRH-----YFNNTDGLIYVVDSLDRE 74 (169)
Q Consensus 35 ~~~~~~i~D~~G~~~~~-~~~~~-----~~~~~~~ii~v~d~~~~~ 74 (169)
+++.+.|.||+|+..-. ++... -.-..|-+|||.|.+--.
T Consensus 182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQ 227 (483)
T KOG0780|consen 182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQ 227 (483)
T ss_pred cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccH
Confidence 57889999999965322 12111 123579999999997543
No 417
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=92.04 E-value=0.035 Score=37.45 Aligned_cols=46 Identities=13% Similarity=0.106 Sum_probs=29.7
Q ss_pred ccccCCCCCceeeeeceeeeeeeeeEEEEEEEECCEEEEEEEcCCCCC
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEK 49 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~ 49 (169)
+.+.+|+|||||+.++.... ...|..+..+......+.+ |.+|.+.
T Consensus 6 i~G~~gsGKTTli~~L~~~l-~~~g~~V~~iK~~~~~~~~-d~~g~Ds 51 (159)
T cd03116 6 FVGYSGSGKTTLLEKLIPAL-SARGLRVAVIKHDHHDFDI-DTPGKDS 51 (159)
T ss_pred EECCCCCCHHHHHHHHHHHH-HHcCCcEEEEEecCCcccc-cCccchH
Confidence 34578999999999885443 3345555556555555554 7777653
No 418
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.86 E-value=0.17 Score=39.54 Aligned_cols=65 Identities=11% Similarity=0.123 Sum_probs=34.9
Q ss_pred CEEEEEEEcCCCCCch-hh---HHhhcc-----CCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 030931 36 NVIFTVWDVGGQEKLR-PL---WRHYFN-----NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 106 (169)
Q Consensus 36 ~~~~~i~D~~G~~~~~-~~---~~~~~~-----~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl 106 (169)
++.+.++||+|..... .. +..+++ ...-.++|+|++-.. +...+....+ +. --+-=++.+|.|-
T Consensus 299 ~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f-~~----~~~~glIlTKLDE 371 (432)
T PRK12724 299 GSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAY-ES----LNYRRILLTKLDE 371 (432)
T ss_pred CCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHh-cC----CCCCEEEEEcccC
Confidence 5678999999975321 11 122222 234678899986532 2222223333 11 1245577899995
Q ss_pred C
Q 030931 107 K 107 (169)
Q Consensus 107 ~ 107 (169)
.
T Consensus 372 t 372 (432)
T PRK12724 372 A 372 (432)
T ss_pred C
Confidence 3
No 419
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=91.23 E-value=0.1 Score=37.46 Aligned_cols=25 Identities=4% Similarity=-0.218 Sum_probs=22.1
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++-.|+||||++|-++..+.|+-|
T Consensus 35 LIGPNGAGKTTlfNlitG~~~P~~G 59 (250)
T COG0411 35 LIGPNGAGKTTLFNLITGFYKPSSG 59 (250)
T ss_pred EECCCCCCceeeeeeecccccCCCc
Confidence 4567899999999999999999988
No 420
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=91.21 E-value=1 Score=29.90 Aligned_cols=58 Identities=17% Similarity=0.125 Sum_probs=36.3
Q ss_pred CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 030931 36 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQD 105 (169)
Q Consensus 36 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~D 105 (169)
++.+-+.||+|... ....++..||-+++|...+-.+.+.-++ ..++ ..-=++++||+|
T Consensus 91 ~~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe~~D~y~~~k---~~~~------~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQ---SEVDIASMADTTVVVMAPGAGDDIQAIK---AGIM------EIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccCh---hhhhHHHhCCEEEEEECCCchhHHHHhh---hhHh------hhcCEEEEeCCC
Confidence 57789999998642 2234788899999998765322222211 1122 223578899987
No 421
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=91.20 E-value=0.028 Score=36.45 Aligned_cols=25 Identities=12% Similarity=-0.193 Sum_probs=20.2
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|.+..|+|||||++.+.....|+.|
T Consensus 16 i~G~nGsGKStLl~~l~g~~~~~~G 40 (137)
T PF00005_consen 16 IVGPNGSGKSTLLKALAGLLPPDSG 40 (137)
T ss_dssp EEESTTSSHHHHHHHHTTSSHESEE
T ss_pred EEccCCCccccceeeeccccccccc
Confidence 4678999999999988777767555
No 422
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=91.15 E-value=0.72 Score=30.93 Aligned_cols=65 Identities=22% Similarity=0.153 Sum_probs=35.8
Q ss_pred CEEEEEEEcCCCCCchhhHHh--------hccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 030931 36 NVIFTVWDVGGQEKLRPLWRH--------YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 106 (169)
Q Consensus 36 ~~~~~i~D~~G~~~~~~~~~~--------~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl 106 (169)
.....+.|++|-..-...... ..-.++++++++|..+..........+...+... =+++.||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a------d~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA------DRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC------CEEEEecccC
Confidence 345678899997543332221 2235789999999865433221122222322221 3568999985
No 423
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=91.01 E-value=0.11 Score=35.45 Aligned_cols=43 Identities=19% Similarity=0.110 Sum_probs=26.2
Q ss_pred ccccCCCCCceeeeecee----eeeeeeeEEEEEEEEC--CEEEEEEEc
Q 030931 2 LRVKQPYCTSCTLVKFYL----LFLLLVRFNVEKVQYK--NVIFTVWDV 44 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~----~~~~t~~~~~~~~~~~--~~~~~i~D~ 44 (169)
|-+.+|+|||||++++.+ ...+.-|+....+..+ .+-|.+.|.
T Consensus 4 iTG~pG~GKTTll~k~i~~l~~~~~~v~Gf~t~evr~~g~r~GF~iv~l 52 (168)
T PF03266_consen 4 ITGPPGVGKTTLLKKVIEELKKKGLPVGGFYTEEVRENGRRIGFDIVDL 52 (168)
T ss_dssp EES-TTSSHHHHHHHHHHHHHHTCGGEEEEEEEEEETTSSEEEEEEEET
T ss_pred EECcCCCCHHHHHHHHHHHhhccCCccceEEeecccCCCceEEEEEEEC
Confidence 446899999999997632 2346666665554442 233555555
No 424
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=90.73 E-value=0.13 Score=38.32 Aligned_cols=95 Identities=7% Similarity=0.025 Sum_probs=52.4
Q ss_pred ccccCCCCCceeeeeceeeeeeeeeEEEEEEEECCEEEEEEEcCCCCC------------------------chhhHHhh
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEK------------------------LRPLWRHY 57 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~------------------------~~~~~~~~ 57 (169)
|.+..+.|||+++++|...+.+..+-. ...+.+...++|.... ........
T Consensus 66 ivG~snnGKT~Ii~rF~~~hp~~~d~~-----~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~l 140 (302)
T PF05621_consen 66 IVGDSNNGKTMIIERFRRLHPPQSDED-----AERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRL 140 (302)
T ss_pred EecCCCCcHHHHHHHHHHHCCCCCCCC-----CccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHH
Confidence 456889999999999966555443311 1123444444443111 12223356
Q ss_pred ccCCCEEEEEEECCCh---hhHHH---HHHHHHHHhcCCCCCCCeEEEEEeCC
Q 030931 58 FNNTDGLIYVVDSLDR---ERIGK---AKQEFQAIIKDPFMLNSVILVFANKQ 104 (169)
Q Consensus 58 ~~~~~~ii~v~d~~~~---~~~~~---~~~~~~~~~~~~~~~~~piivv~nK~ 104 (169)
++....=++++|=-+. .+... +..+++.+ .+.-++|++.+|++-
T Consensus 141 lr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L---~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 141 LRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFL---GNELQIPIVGVGTRE 190 (302)
T ss_pred HHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHH---hhccCCCeEEeccHH
Confidence 6777888888875321 12222 22333333 222379999999764
No 425
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=90.70 E-value=0.047 Score=30.63 Aligned_cols=16 Identities=13% Similarity=-0.078 Sum_probs=13.2
Q ss_pred ccccCCCCCceeeeec
Q 030931 2 LRVKQPYCTSCTLVKF 17 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f 17 (169)
|.++.|||||||+..+
T Consensus 28 i~G~nGsGKSTllDAi 43 (62)
T PF13555_consen 28 ITGPNGSGKSTLLDAI 43 (62)
T ss_pred EECCCCCCHHHHHHHH
Confidence 4568999999999854
No 426
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=90.53 E-value=0.11 Score=37.58 Aligned_cols=17 Identities=12% Similarity=-0.187 Sum_probs=14.2
Q ss_pred ccccCCCCCceeeeece
Q 030931 2 LRVKQPYCTSCTLVKFY 18 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~ 18 (169)
+.|-+||||||+..++.
T Consensus 4 l~G~pGSGKST~a~~La 20 (249)
T TIGR03574 4 LTGLPGVGKSTFSKELA 20 (249)
T ss_pred EEcCCCCCHHHHHHHHH
Confidence 56789999999999763
No 427
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=90.46 E-value=0.032 Score=36.44 Aligned_cols=18 Identities=11% Similarity=-0.093 Sum_probs=15.3
Q ss_pred CccccCCCCCceeeeece
Q 030931 1 MLRVKQPYCTSCTLVKFY 18 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f~ 18 (169)
++.+.+||||||+.+++.
T Consensus 3 i~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 3 ILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEESTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 356799999999999874
No 428
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=90.40 E-value=3.8 Score=30.20 Aligned_cols=78 Identities=13% Similarity=0.121 Sum_probs=47.0
Q ss_pred EEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHH
Q 030931 37 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVC 116 (169)
Q Consensus 37 ~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~ 116 (169)
..+.|.|+|-.- .-..-..+.++|.+|+|--.+. ..+.+....++-. ++ -++|..+|.||.++... ..++..
T Consensus 164 ~~~~IIDsaaG~--gCpVi~sl~~aD~ai~VTEPTp-~glhD~kr~~el~-~~---f~ip~~iViNr~~~g~s-~ie~~~ 235 (284)
T COG1149 164 ADLLIIDSAAGT--GCPVIASLKGADLAILVTEPTP-FGLHDLKRALELV-EH---FGIPTGIVINRYNLGDS-EIEEYC 235 (284)
T ss_pred cceeEEecCCCC--CChHHHhhccCCEEEEEecCCc-cchhHHHHHHHHH-HH---hCCceEEEEecCCCCch-HHHHHH
Confidence 367777776321 1223456789999999976653 2233333333222 22 27999999999977654 556666
Q ss_pred hhhCCC
Q 030931 117 EGLGLF 122 (169)
Q Consensus 117 ~~~~~~ 122 (169)
+..+..
T Consensus 236 ~e~gi~ 241 (284)
T COG1149 236 EEEGIP 241 (284)
T ss_pred HHcCCC
Confidence 655544
No 429
>PHA02518 ParA-like protein; Provisional
Probab=90.26 E-value=2.3 Score=29.58 Aligned_cols=68 Identities=12% Similarity=-0.046 Sum_probs=41.8
Q ss_pred CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh--hhHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCC
Q 030931 35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR--ERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDM 106 (169)
Q Consensus 35 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl 106 (169)
..+.+.|+|+||.. .......+..+|.+|++...+.. .....+..++..... . ..+.| ..++.|+.+.
T Consensus 75 ~~~d~viiD~p~~~--~~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~iv~n~~~~ 145 (211)
T PHA02518 75 SGYDYVVVDGAPQD--SELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQE-V-TDGLPKFAFIISRAIK 145 (211)
T ss_pred ccCCEEEEeCCCCc--cHHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHh-h-CCCCceEEEEEeccCC
Confidence 35789999999874 45566778899999999987532 223333334444321 1 12344 4566777654
No 430
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=89.88 E-value=2.4 Score=30.33 Aligned_cols=67 Identities=16% Similarity=0.089 Sum_probs=44.4
Q ss_pred EEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030931 38 IFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG 108 (169)
Q Consensus 38 ~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 108 (169)
.+.++|+|+. ........+..||.++++...+ ..++..+...+.++.+.. ....+.-++.|+.|...
T Consensus 116 D~viiD~pp~--~~~~~~~~l~~ad~vii~~~~~-~~s~~~~~~~~~~l~~~~-~~~~~~~iv~n~~~~~~ 182 (246)
T TIGR03371 116 DWVLIDVPRG--PSPITRQALAAADLVLVVVNAD-AACYATLHQQALALFAGS-GPRIGPHFLINQFDPAR 182 (246)
T ss_pred CEEEEECCCC--chHHHHHHHHhCCeEEEEeCCC-HHHHHHHHHHHHHHhhcc-cccccceEEeeccCcch
Confidence 6899999985 3445667778999999999874 344555543333443311 12456779999998643
No 431
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=89.87 E-value=0.28 Score=37.98 Aligned_cols=65 Identities=14% Similarity=0.038 Sum_probs=34.7
Q ss_pred CEEEEEEEcCCCCCchhhH----Hhhcc--CCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030931 36 NVIFTVWDVGGQEKLRPLW----RHYFN--NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 107 (169)
Q Consensus 36 ~~~~~i~D~~G~~~~~~~~----~~~~~--~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 107 (169)
.+.+.+.||+|........ ..+.. ..+.+++|.+.+ ....+....+..+ + .-.+--++.||.|-.
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag--~~~~d~~~i~~~f-~----~l~i~glI~TKLDET 355 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSG--MKSADVMTILPKL-A----EIPIDGFIITKMDET 355 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCc--ccHHHHHHHHHhc-C----cCCCCEEEEEcccCC
Confidence 4688999999985432221 12222 345666776652 2233333333332 1 122456779999964
No 432
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.71 E-value=0.43 Score=34.67 Aligned_cols=48 Identities=13% Similarity=0.157 Sum_probs=33.6
Q ss_pred ccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030931 58 FNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG 108 (169)
Q Consensus 58 ~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 108 (169)
.....++++|||++....+..+..|+...-- .. -+ -++.+|||.|...
T Consensus 76 a~pl~a~vmvfdlse~s~l~alqdwl~htdi-ns-fd-illcignkvdrvp 123 (418)
T KOG4273|consen 76 AEPLQAFVMVFDLSEKSGLDALQDWLPHTDI-NS-FD-ILLCIGNKVDRVP 123 (418)
T ss_pred ccceeeEEEEEeccchhhhHHHHhhcccccc-cc-ch-hheeccccccccc
Confidence 3556899999999999889888888764311 10 12 3456799999753
No 433
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=89.27 E-value=0.056 Score=38.84 Aligned_cols=26 Identities=8% Similarity=-0.194 Sum_probs=23.0
Q ss_pred ccccCCCCCceeeeeceeeeeeeeeE
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVRF 27 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~~ 27 (169)
|++..|+|||||++=+...+.||.|-
T Consensus 58 iiG~NGaGKSTLlkliaGi~~Pt~G~ 83 (249)
T COG1134 58 IIGHNGAGKSTLLKLIAGIYKPTSGK 83 (249)
T ss_pred EECCCCCcHHHHHHHHhCccCCCCce
Confidence 46789999999999889999999993
No 434
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=89.25 E-value=0.055 Score=37.37 Aligned_cols=20 Identities=5% Similarity=-0.157 Sum_probs=16.7
Q ss_pred CccccCCCCCceeeeeceee
Q 030931 1 MLRVKQPYCTSCTLVKFYLL 20 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f~~~ 20 (169)
|+.+.+++|||||+|.+...
T Consensus 131 ~~~G~~nvGKStliN~l~~~ 150 (190)
T cd01855 131 YVVGATNVGKSTLINALLKK 150 (190)
T ss_pred EEEcCCCCCHHHHHHHHHHh
Confidence 46789999999999998544
No 435
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=88.94 E-value=0.063 Score=37.08 Aligned_cols=25 Identities=16% Similarity=-0.077 Sum_probs=19.8
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|.+..|+|||||++-+.....|+.|
T Consensus 23 i~G~nGsGKSTLl~~i~G~~~~~~G 47 (190)
T TIGR01166 23 LLGANGAGKSTLLLHLNGLLRPQSG 47 (190)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCce
Confidence 5678999999999977666666665
No 436
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=88.77 E-value=0.98 Score=38.14 Aligned_cols=67 Identities=7% Similarity=0.063 Sum_probs=36.2
Q ss_pred CEEEEEEEcCCCCCchh-hH---Hhh--ccCCCEEEEEEECCC-hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030931 36 NVIFTVWDVGGQEKLRP-LW---RHY--FNNTDGLIYVVDSLD-RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 107 (169)
Q Consensus 36 ~~~~~i~D~~G~~~~~~-~~---~~~--~~~~~~ii~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 107 (169)
++.+.++||+|..-... +. ... ....+-.++|.|.+. .+.+.++.+.+..... --+-=++++|.|-.
T Consensus 263 ~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~-----~~i~glIlTKLDEt 336 (767)
T PRK14723 263 DKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAG-----EDVDGCIITKLDEA 336 (767)
T ss_pred CCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhccc-----CCCCEEEEeccCCC
Confidence 45789999999543221 11 111 123566889999864 3344444333332210 01345779999954
No 437
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=88.73 E-value=2.7 Score=25.61 Aligned_cols=43 Identities=14% Similarity=0.103 Sum_probs=31.2
Q ss_pred hhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEE
Q 030931 51 RPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVF 100 (169)
Q Consensus 51 ~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv 100 (169)
....+..+..+|++|++.|..+......+++.-.+ .++|++.+
T Consensus 39 ~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk-------~~ip~~~~ 81 (97)
T PF10087_consen 39 ASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKK-------YGIPIIYS 81 (97)
T ss_pred hhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHH-------cCCcEEEE
Confidence 33467778899999999999888766666544333 27788876
No 438
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=88.69 E-value=0.061 Score=38.35 Aligned_cols=25 Identities=12% Similarity=-0.301 Sum_probs=19.0
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
+.+..|||||||++-+..--.||.|
T Consensus 36 I~GpSGSGKSTLLniig~ld~pt~G 60 (226)
T COG1136 36 IVGPSGSGKSTLLNLLGGLDKPTSG 60 (226)
T ss_pred EECCCCCCHHHHHHHHhcccCCCCc
Confidence 4568999999999977555555665
No 439
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=88.48 E-value=0.054 Score=34.46 Aligned_cols=20 Identities=0% Similarity=-0.212 Sum_probs=16.0
Q ss_pred ccccCCCCCceeeeeceeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLF 21 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~ 21 (169)
|-+.+||||||+.+.+....
T Consensus 3 i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 3 ISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 55789999999999875544
No 440
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=88.44 E-value=0.072 Score=37.59 Aligned_cols=25 Identities=12% Similarity=-0.302 Sum_probs=19.7
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|+|||||++-+.....|+.|
T Consensus 35 l~G~nGsGKSTLl~~i~Gl~~~~~G 59 (218)
T cd03255 35 IVGPSGSGKSTLLNILGGLDRPTSG 59 (218)
T ss_pred EEcCCCCCHHHHHHHHhCCcCCCce
Confidence 5678999999999987666666655
No 441
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=88.18 E-value=0.078 Score=37.39 Aligned_cols=25 Identities=12% Similarity=-0.259 Sum_probs=19.8
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|.+..|+|||||++-+.....|+.|
T Consensus 34 i~G~nGsGKSTLl~~l~Gl~~~~~G 58 (216)
T TIGR00960 34 LVGHSGAGKSTFLKLILGIEKPTRG 58 (216)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCce
Confidence 5678999999999977666666655
No 442
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=88.12 E-value=1.1 Score=34.81 Aligned_cols=66 Identities=18% Similarity=0.164 Sum_probs=37.6
Q ss_pred CCEEEEEEEcCCCCCchhh----HHhhccC---CCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030931 35 KNVIFTVWDVGGQEKLRPL----WRHYFNN---TDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 107 (169)
Q Consensus 35 ~~~~~~i~D~~G~~~~~~~----~~~~~~~---~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 107 (169)
.++.+.+.||+|......+ ...++.. ..-.++|.|++.. .+.+.+.+..+.. -.+-=++.+|.|-.
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~-----~~~~~~I~TKlDet 325 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSP-----FSYKTVIFTKLDET 325 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcC-----CCCCEEEEEeccCC
Confidence 4677999999997543221 1122332 2258899998654 2333344444411 12456788999953
No 443
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=88.11 E-value=0.073 Score=36.55 Aligned_cols=25 Identities=4% Similarity=-0.267 Sum_probs=20.2
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|+|||||++-+.....|+.|
T Consensus 31 i~G~nGsGKSTLl~~l~G~~~~~~G 55 (182)
T cd03215 31 IAGLVGNGQTELAEALFGLRPPASG 55 (182)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCc
Confidence 5678999999999987666666666
No 444
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.02 E-value=0.079 Score=37.49 Aligned_cols=25 Identities=16% Similarity=-0.246 Sum_probs=19.6
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|.+..|+|||||++-+.....|+.|
T Consensus 35 i~G~nGsGKSTLl~~l~Gl~~~~~G 59 (220)
T cd03293 35 LVGPSGCGKSTLLRIIAGLERPTSG 59 (220)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCce
Confidence 5678999999999977666556655
No 445
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=87.96 E-value=2.9 Score=30.05 Aligned_cols=68 Identities=12% Similarity=0.090 Sum_probs=44.3
Q ss_pred CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhc--CCCCCCCeEEEEEeCCC
Q 030931 35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIK--DPFMLNSVILVFANKQD 105 (169)
Q Consensus 35 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~--~~~~~~~piivv~nK~D 105 (169)
+.+.+.|.|+||... ......+..||.+|+.+..+ ...+......+..+.+ ....++.|..++.|.++
T Consensus 82 ~~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps-~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~ 151 (231)
T PRK13849 82 QGFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLT-PLDIDEALSTYRYVIELLLSENLAIPTAILRQRVP 151 (231)
T ss_pred CCCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCc-HHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence 468899999999763 44556778899999888763 3334444333333222 11224678889999986
No 446
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.95 E-value=0.078 Score=37.19 Aligned_cols=25 Identities=12% Similarity=-0.105 Sum_probs=19.5
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|.+..|+|||||++-+.....|+.|
T Consensus 31 i~G~nGsGKSTLl~~l~G~~~~~~G 55 (210)
T cd03269 31 LLGPNGAGKTTTIRMILGIILPDSG 55 (210)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCce
Confidence 5678999999999977666556655
No 447
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=87.95 E-value=0.072 Score=33.69 Aligned_cols=20 Identities=5% Similarity=-0.187 Sum_probs=16.4
Q ss_pred ccccCCCCCceeeeeceeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLF 21 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~ 21 (169)
|.+.+||||||+.+++.+.+
T Consensus 4 I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 4 ISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 45789999999999886654
No 448
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=87.94 E-value=0.081 Score=37.00 Aligned_cols=25 Identities=12% Similarity=-0.199 Sum_probs=19.8
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|.+..|+|||||++-+.....|+.|
T Consensus 31 i~G~nGsGKSTLl~~l~Gl~~p~~G 55 (205)
T cd03226 31 LTGKNGAGKTTLAKILAGLIKESSG 55 (205)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCce
Confidence 5678999999999987666666666
No 449
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=87.80 E-value=6.2 Score=26.53 Aligned_cols=66 Identities=12% Similarity=0.064 Sum_probs=43.2
Q ss_pred CCEEEEEEEcCCCCCchhhHHhhc--cCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 030931 35 KNVIFTVWDVGGQEKLRPLWRHYF--NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 106 (169)
Q Consensus 35 ~~~~~~i~D~~G~~~~~~~~~~~~--~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl 106 (169)
+.+.+-|.|+|+... ......+ ..+|.+++|...+ ..+......+++.+.+. .-...-++.|+.+.
T Consensus 66 ~~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~-~~s~~~~~~~~~~l~~~---~~~~~gvv~N~~~~ 133 (169)
T cd02037 66 GELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQ-EVALDDVRKAIDMFKKV---NIPILGVVENMSYF 133 (169)
T ss_pred CCCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCc-hhhHHHHHHHHHHHHhc---CCCeEEEEEcCCcc
Confidence 468899999998742 2222233 5789999998764 45666666666666432 12345678999874
No 450
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.77 E-value=0.084 Score=37.74 Aligned_cols=25 Identities=12% Similarity=-0.229 Sum_probs=19.7
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|+|||||++-+.....|+.|
T Consensus 31 l~G~nGsGKSTLl~~l~G~~~p~~G 55 (235)
T cd03261 31 IIGPSGSGKSTLLRLIVGLLRPDSG 55 (235)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCce
Confidence 5678999999999977666556655
No 451
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.74 E-value=0.08 Score=36.21 Aligned_cols=25 Identities=16% Similarity=-0.320 Sum_probs=19.2
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|.+..|+|||||++-+.....|+.|
T Consensus 31 i~G~nGsGKSTLl~~l~G~~~~~~G 55 (178)
T cd03229 31 LLGPSGSGKSTLLRCIAGLEEPDSG 55 (178)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCce
Confidence 5678999999999977655555555
No 452
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=87.71 E-value=0.063 Score=34.41 Aligned_cols=44 Identities=9% Similarity=0.192 Sum_probs=25.2
Q ss_pred hhccCCCEEEEEEECCChh-hHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 030931 56 HYFNNTDGLIYVVDSLDRE-RIGKAKQEFQAIIKDPFMLNSVILVFANK 103 (169)
Q Consensus 56 ~~~~~~~~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~piivv~nK 103 (169)
..++.....++++|=-+.- + .....++..+.+ ..+.+++++|+-
T Consensus 81 ~~l~~~~~~~lviDe~~~l~~-~~~l~~l~~l~~---~~~~~vvl~G~~ 125 (131)
T PF13401_consen 81 DALDRRRVVLLVIDEADHLFS-DEFLEFLRSLLN---ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHCTEEEEEEETTHHHHT-HHHHHHHHHHTC---SCBEEEEEEESS
T ss_pred HHHHhcCCeEEEEeChHhcCC-HHHHHHHHHHHh---CCCCeEEEEECh
Confidence 3455556678888864442 2 222233444433 457889998876
No 453
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=87.61 E-value=0.079 Score=37.18 Aligned_cols=25 Identities=12% Similarity=-0.201 Sum_probs=19.5
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|+|||||++-+.....|+.|
T Consensus 32 l~G~nGsGKSTLl~~l~G~~~~~~G 56 (211)
T cd03225 32 IVGPNGSGKSTLLRLLNGLLGPTSG 56 (211)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCc
Confidence 5678999999999977665556555
No 454
>COG3911 Predicted ATPase [General function prediction only]
Probab=87.57 E-value=0.077 Score=35.36 Aligned_cols=25 Identities=12% Similarity=-0.112 Sum_probs=19.6
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|-+.+|+|||+|++.+......|..
T Consensus 14 ltGgpGaGKTtLL~aLa~~Gfatve 38 (183)
T COG3911 14 LTGGPGAGKTTLLAALARAGFATVE 38 (183)
T ss_pred EeCCCCCcHHHHHHHHHHcCceeec
Confidence 4568999999999988666666655
No 455
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=87.48 E-value=0.091 Score=34.69 Aligned_cols=25 Identities=12% Similarity=-0.282 Sum_probs=19.8
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|+|||||++-+.....|+.|
T Consensus 31 i~G~nGsGKStLl~~l~G~~~~~~G 55 (144)
T cd03221 31 LVGRNGAGKSTLLKLIAGELEPDEG 55 (144)
T ss_pred EECCCCCCHHHHHHHHcCCCCCCce
Confidence 5678999999999977666666655
No 456
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=87.47 E-value=0.083 Score=37.32 Aligned_cols=25 Identities=12% Similarity=-0.189 Sum_probs=19.9
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|+|||||++-+.....|+.|
T Consensus 33 i~G~nGsGKSTLl~~l~Gl~~~~~G 57 (220)
T cd03263 33 LLGHNGAGKTTTLKMLTGELRPTSG 57 (220)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCc
Confidence 5678999999999977666666665
No 457
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=87.44 E-value=0.082 Score=36.69 Aligned_cols=25 Identities=8% Similarity=-0.118 Sum_probs=20.1
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|.+..|+|||||++-+.....|+.|
T Consensus 31 l~G~nGsGKSTLl~~l~G~~~~~~G 55 (195)
T PRK13541 31 IKGANGCGKSSLLRMIAGIMQPSSG 55 (195)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCc
Confidence 5678999999999977666666666
No 458
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=87.42 E-value=0.087 Score=37.26 Aligned_cols=25 Identities=12% Similarity=-0.105 Sum_probs=19.4
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|.+..|+|||||++-+.....|+.|
T Consensus 31 i~G~nGsGKSTLl~~l~Gl~~~~~G 55 (222)
T cd03224 31 LLGRNGAGKTTLLKTIMGLLPPRSG 55 (222)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCc
Confidence 5678999999999977655556655
No 459
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=87.39 E-value=0.091 Score=37.53 Aligned_cols=25 Identities=12% Similarity=-0.278 Sum_probs=19.7
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|+|||||++-+.....|+.|
T Consensus 40 l~G~nGsGKSTLl~~l~Gl~~~~~G 64 (233)
T PRK11629 40 IVGSSGSGKSTLLHLLGGLDTPTSG 64 (233)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCce
Confidence 5678999999999977666556655
No 460
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=87.32 E-value=0.085 Score=37.60 Aligned_cols=25 Identities=12% Similarity=-0.196 Sum_probs=19.2
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|.+..|+|||||++-+.....|+.|
T Consensus 31 l~G~nGsGKSTLl~~l~Gl~~p~~G 55 (232)
T cd03218 31 LLGPNGAGKTTTFYMIVGLVKPDSG 55 (232)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCc
Confidence 5678999999999977655555555
No 461
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=87.32 E-value=0.072 Score=36.59 Aligned_cols=25 Identities=0% Similarity=-0.243 Sum_probs=19.6
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|+|||||++-+.....|+.|
T Consensus 30 l~G~nGsGKSTLl~~l~Gl~~p~~G 54 (177)
T cd03222 30 IVGPNGTGKTTAVKILAGQLIPNGD 54 (177)
T ss_pred EECCCCChHHHHHHHHHcCCCCCCc
Confidence 5678999999999977665556655
No 462
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=87.26 E-value=0.088 Score=35.52 Aligned_cols=25 Identities=12% Similarity=-0.150 Sum_probs=19.5
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|.+..|+|||||++-+.....|+.|
T Consensus 31 l~G~nGsGKSTLl~~i~G~~~~~~G 55 (163)
T cd03216 31 LLGENGAGKSTLMKILSGLYKPDSG 55 (163)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCe
Confidence 5678999999999977666556555
No 463
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=87.20 E-value=0.095 Score=36.83 Aligned_cols=25 Identities=20% Similarity=-0.109 Sum_probs=19.6
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|.+..|+|||||++-+.....|+.|
T Consensus 32 i~G~nGsGKSTLl~~l~G~~~~~~G 56 (214)
T cd03292 32 LVGPSGAGKSTLLKLIYKEELPTSG 56 (214)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCce
Confidence 5678999999999977666666655
No 464
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=87.16 E-value=0.082 Score=33.66 Aligned_cols=17 Identities=0% Similarity=-0.150 Sum_probs=14.5
Q ss_pred CccccCCCCCceeeeec
Q 030931 1 MLRVKQPYCTSCTLVKF 17 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f 17 (169)
+|.+.+|+|||++++.+
T Consensus 6 ~l~G~~G~GKTtl~~~l 22 (148)
T smart00382 6 LIVGPPGSGKTTLARAL 22 (148)
T ss_pred EEECCCCCcHHHHHHHH
Confidence 36679999999999976
No 465
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=87.13 E-value=6 Score=27.48 Aligned_cols=67 Identities=13% Similarity=0.059 Sum_probs=41.4
Q ss_pred CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030931 36 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 107 (169)
Q Consensus 36 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 107 (169)
.+.+.|.|+|..... .......+.+|.+|+|.+.. ..+...+.+..+.+.+ . ....+-+|.||.|..
T Consensus 127 ~yD~ViiD~pp~~~~-~~~~~~~~~~D~vilV~~~~-~~~~~~~~~~~~~l~~-~--~~~~~gvVlN~~~~~ 193 (204)
T TIGR01007 127 YFDYIIIDTPPIGTV-TDAAIIARACDASILVTDAG-EIKKRDVQKAKEQLEQ-T--GSNFLGVVLNKVDIS 193 (204)
T ss_pred cCCEEEEeCCCcccc-chHHHHHHhCCeEEEEEECC-CCCHHHHHHHHHHHHh-C--CCCEEEEEEeCcccc
Confidence 466888999863221 12234556799999999884 3444555544444422 1 224577899999964
No 466
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=87.10 E-value=0.093 Score=36.64 Aligned_cols=25 Identities=16% Similarity=-0.154 Sum_probs=19.9
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|+|||||++-+.....|+.|
T Consensus 29 i~G~nGsGKSTLl~~l~G~~~~~~G 53 (206)
T TIGR03608 29 IIGESGSGKSTLLNIIGLLEKFDSG 53 (206)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCe
Confidence 5678999999999987666666665
No 467
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.10 E-value=0.088 Score=37.56 Aligned_cols=25 Identities=8% Similarity=-0.261 Sum_probs=19.8
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|.+..|+|||||++-+.....|+.|
T Consensus 36 l~G~nGsGKSTLl~~l~G~~~~~~G 60 (233)
T cd03258 36 IIGRSGAGKSTLIRCINGLERPTSG 60 (233)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCc
Confidence 5678999999999987666666655
No 468
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=87.07 E-value=0.092 Score=37.03 Aligned_cols=25 Identities=16% Similarity=-0.152 Sum_probs=19.8
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|.+..|+|||||++-+.....|+.|
T Consensus 36 i~G~nGsGKSTLl~~l~Gl~~~~~G 60 (218)
T cd03266 36 LLGPNGAGKTTTLRMLAGLLEPDAG 60 (218)
T ss_pred EECCCCCCHHHHHHHHhCCcCCCCc
Confidence 5678999999999987666666655
No 469
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=86.94 E-value=0.081 Score=35.99 Aligned_cols=16 Identities=13% Similarity=0.011 Sum_probs=12.5
Q ss_pred ccccCCCCCceeeeec
Q 030931 2 LRVKQPYCTSCTLVKF 17 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f 17 (169)
|.+..|+|||+|++++
T Consensus 29 l~G~~G~GKT~ll~~~ 44 (185)
T PF13191_consen 29 LTGESGSGKTSLLRAL 44 (185)
T ss_dssp E-B-TTSSHHHHHHHH
T ss_pred EECCCCCCHHHHHHHH
Confidence 5678999999999976
No 470
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=86.87 E-value=0.099 Score=36.97 Aligned_cols=25 Identities=12% Similarity=-0.088 Sum_probs=19.4
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|+|||||++-+.....|+.|
T Consensus 31 i~G~nGsGKSTLl~~i~G~~~~~~G 55 (220)
T cd03265 31 LLGPNGAGKTTTIKMLTTLLKPTSG 55 (220)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCce
Confidence 5678999999999977665556555
No 471
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=86.75 E-value=0.11 Score=37.36 Aligned_cols=25 Identities=12% Similarity=-0.312 Sum_probs=19.5
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|+|||||++-+.....|+.|
T Consensus 33 i~G~nGsGKSTLl~~l~Gl~~~~~G 57 (239)
T cd03296 33 LLGPSGSGKTTLLRLIAGLERPDSG 57 (239)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCce
Confidence 5678999999999977665556555
No 472
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=86.65 E-value=0.09 Score=37.83 Aligned_cols=25 Identities=16% Similarity=-0.156 Sum_probs=20.0
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|.+..|||||||++-+..-..|+.|
T Consensus 35 i~G~nGsGKSTL~~~l~GLl~p~~G 59 (235)
T COG1122 35 LIGPNGSGKSTLLKLLNGLLKPTSG 59 (235)
T ss_pred EECCCCCCHHHHHHHHcCcCcCCCC
Confidence 5678999999999987666666665
No 473
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=86.60 E-value=0.11 Score=36.63 Aligned_cols=25 Identities=12% Similarity=-0.294 Sum_probs=19.5
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|.+..|+|||||++-+.....|+.|
T Consensus 31 i~G~nGsGKSTLl~~l~G~~~p~~G 55 (213)
T cd03259 31 LLGPSGCGKTTLLRLIAGLERPDSG 55 (213)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCe
Confidence 5678999999999977665556655
No 474
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=86.56 E-value=0.24 Score=36.98 Aligned_cols=16 Identities=13% Similarity=-0.076 Sum_probs=13.7
Q ss_pred CccccCCCCCceeeee
Q 030931 1 MLRVKQPYCTSCTLVK 16 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~ 16 (169)
|+.+=|+.|||||+|.
T Consensus 147 mVvGvPNVGKSsLINa 162 (335)
T KOG2485|consen 147 MVVGVPNVGKSSLINA 162 (335)
T ss_pred EEEcCCCCChHHHHHH
Confidence 5677899999999994
No 475
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=86.49 E-value=0.11 Score=37.37 Aligned_cols=25 Identities=12% Similarity=-0.225 Sum_probs=19.1
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|.+..|+|||||++-+.....|+.|
T Consensus 33 l~G~nGsGKSTLl~~l~Gl~~~~~G 57 (243)
T TIGR02315 33 IIGPSGAGKSTLLRCINRLVEPSSG 57 (243)
T ss_pred EECCCCCCHHHHHHHHhCCcCCCcc
Confidence 5678999999999977555555555
No 476
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=86.49 E-value=0.1 Score=37.04 Aligned_cols=25 Identities=12% Similarity=-0.178 Sum_probs=19.8
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|+|||||++-+.....|+.|
T Consensus 36 i~G~nGsGKSTLl~~l~G~~~~~~G 60 (228)
T cd03257 36 LVGESGSGKSTLARAILGLLKPTSG 60 (228)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCc
Confidence 5678999999999977666666665
No 477
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=86.47 E-value=0.14 Score=36.95 Aligned_cols=15 Identities=7% Similarity=-0.086 Sum_probs=12.8
Q ss_pred ccccCCCCCceeeee
Q 030931 2 LRVKQPYCTSCTLVK 16 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~ 16 (169)
++++.|||||+|+..
T Consensus 18 iIG~sGSGKT~li~~ 32 (241)
T PF04665_consen 18 IIGKSGSGKTTLIKS 32 (241)
T ss_pred EECCCCCCHHHHHHH
Confidence 678999999997764
No 478
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=86.45 E-value=0.089 Score=36.47 Aligned_cols=25 Identities=4% Similarity=-0.257 Sum_probs=21.7
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
++++.|||||||..-+..--.||.|
T Consensus 44 iIG~NGSGKSTLakMlaGmi~PTsG 68 (267)
T COG4167 44 IIGENGSGKSTLAKMLAGMIEPTSG 68 (267)
T ss_pred EEccCCCcHhHHHHHHhcccCCCCc
Confidence 4679999999999988888888888
No 479
>PRK07261 topology modulation protein; Provisional
Probab=86.35 E-value=0.1 Score=35.52 Aligned_cols=18 Identities=11% Similarity=-0.206 Sum_probs=15.0
Q ss_pred ccccCCCCCceeeeecee
Q 030931 2 LRVKQPYCTSCTLVKFYL 19 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~ 19 (169)
+.+.+|||||||..++..
T Consensus 5 i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 5 IIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEcCCCCCHHHHHHHHHH
Confidence 567999999999997743
No 480
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=86.31 E-value=0.11 Score=36.66 Aligned_cols=25 Identities=8% Similarity=-0.104 Sum_probs=20.2
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|.+..|+|||||++-+.....|+.|
T Consensus 42 i~G~nGsGKSTLl~~i~G~~~~~~G 66 (214)
T PRK13543 42 VQGDNGAGKTTLLRVLAGLLHVESG 66 (214)
T ss_pred EEcCCCCCHHHHHHHHhCCCCCCCe
Confidence 5678999999999987666666666
No 481
>PTZ00293 thymidine kinase; Provisional
Probab=86.30 E-value=1.7 Score=30.80 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=24.7
Q ss_pred cCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030931 59 NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 107 (169)
Q Consensus 59 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 107 (169)
+..|++++ | +.+=|..+.++...+.. .++|+++.|-..|-.
T Consensus 76 ~~~dvI~I--D--EaQFf~~i~~~~~~l~~----~g~~VivaGLd~Df~ 116 (211)
T PTZ00293 76 KNYDVIAI--D--EGQFFPDLVEFSEAAAN----LGKIVIVAALDGTFQ 116 (211)
T ss_pred cCCCEEEE--E--chHhhHhHHHHHHHHHH----CCCeEEEEecCcccc
Confidence 55565443 3 23334455555555532 489999999999853
No 482
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=86.28 E-value=0.11 Score=36.49 Aligned_cols=25 Identities=16% Similarity=-0.206 Sum_probs=19.2
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|+|||||++-+.....|+.|
T Consensus 31 l~G~nGsGKSTLl~~l~G~~~~~~G 55 (213)
T cd03301 31 LLGPSGCGKTTTLRMIAGLEEPTSG 55 (213)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCce
Confidence 5678999999999977655555555
No 483
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=86.28 E-value=0.11 Score=36.78 Aligned_cols=25 Identities=4% Similarity=-0.327 Sum_probs=19.2
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|+|||||++-+.....|+.|
T Consensus 18 l~G~NGsGKSTLlk~i~Gl~~~~sG 42 (213)
T PRK15177 18 ILAAPGSGKTTLTRLLCGLDAPDEG 42 (213)
T ss_pred EECCCCCCHHHHHHHHhCCccCCCC
Confidence 5678999999999976555555555
No 484
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=86.22 E-value=0.11 Score=36.58 Aligned_cols=25 Identities=12% Similarity=-0.106 Sum_probs=19.1
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|.+..|+|||||++-+.....|+.|
T Consensus 33 l~G~nGsGKSTLl~~i~Gl~~~~~G 57 (214)
T TIGR02673 33 LTGPSGAGKTTLLKLLYGALTPSRG 57 (214)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCc
Confidence 5678999999999977655555555
No 485
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=86.18 E-value=0.11 Score=36.57 Aligned_cols=25 Identities=12% Similarity=-0.142 Sum_probs=19.5
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|.+..|+|||||++-+.....|+.|
T Consensus 30 l~G~nGsGKSTLl~~l~G~~~p~~G 54 (213)
T cd03235 30 IVGPNGAGKSTLLKAILGLLKPTSG 54 (213)
T ss_pred EECCCCCCHHHHHHHHcCCCCCCCC
Confidence 5678999999999977666666655
No 486
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=86.14 E-value=0.11 Score=36.51 Aligned_cols=25 Identities=8% Similarity=-0.225 Sum_probs=19.3
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|.+..|+|||||++-+.....|+.|
T Consensus 30 i~G~nGsGKSTLl~~l~Gl~~~~~G 54 (211)
T cd03264 30 LLGPNGAGKTTLMRILATLTPPSSG 54 (211)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCcc
Confidence 5678999999999977655555555
No 487
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=86.14 E-value=0.11 Score=36.81 Aligned_cols=25 Identities=12% Similarity=-0.300 Sum_probs=19.5
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|.+..|+|||||++-+.....|+.|
T Consensus 36 i~G~nGsGKSTLl~~i~G~~~~~~G 60 (221)
T TIGR02211 36 IVGSSGSGKSTLLHLLGGLDNPTSG 60 (221)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCc
Confidence 5678999999999977665556555
No 488
>PRK10908 cell division protein FtsE; Provisional
Probab=86.12 E-value=0.12 Score=36.68 Aligned_cols=25 Identities=12% Similarity=-0.214 Sum_probs=20.0
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|+|||||++-+.....|+.|
T Consensus 33 i~G~nGsGKSTLl~~l~G~~~~~~G 57 (222)
T PRK10908 33 LTGHSGAGKSTLLKLICGIERPSAG 57 (222)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCce
Confidence 5678999999999987666666666
No 489
>PRK04195 replication factor C large subunit; Provisional
Probab=86.09 E-value=0.45 Score=38.02 Aligned_cols=19 Identities=5% Similarity=-0.295 Sum_probs=15.0
Q ss_pred ccccCCCCCceeeeeceee
Q 030931 2 LRVKQPYCTSCTLVKFYLL 20 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~ 20 (169)
|-+.+|+|||++++.+...
T Consensus 44 L~GppG~GKTtla~ala~e 62 (482)
T PRK04195 44 LYGPPGVGKTSLAHALAND 62 (482)
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 4568999999999977443
No 490
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=86.07 E-value=3.3 Score=30.18 Aligned_cols=69 Identities=19% Similarity=0.096 Sum_probs=40.3
Q ss_pred CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeE-EEEEeCCCC
Q 030931 36 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVI-LVFANKQDM 106 (169)
Q Consensus 36 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi-ivv~nK~Dl 106 (169)
.+.+.|+||+|...... ....+..||.+|++... +..++..+...+..+.......+.++ -++.|+.+.
T Consensus 117 ~yD~viIDt~g~~~~~~-~~~~l~~AD~viip~~~-~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~ 186 (270)
T PRK13185 117 DYDVILFDVLGDVVCGG-FAAPLQYADYALIVTAN-DFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSAG 186 (270)
T ss_pred cCCEEEEecCCCcccCc-ccchhhhCcEEEEEecC-chhhHHHHHHHHHHHHhhhhccCCCceEEEEeccCh
Confidence 57789999987642221 22235678999998866 44455555444443322111235664 478899773
No 491
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=86.06 E-value=0.12 Score=37.04 Aligned_cols=25 Identities=12% Similarity=-0.060 Sum_probs=19.5
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|+|||||++-+.....|+.|
T Consensus 32 i~G~nGsGKSTLl~~l~G~~~p~~G 56 (236)
T TIGR03864 32 LLGPNGAGKSTLFSLLTRLYVAQEG 56 (236)
T ss_pred EECCCCCCHHHHHHHHhCCcCCCce
Confidence 5678999999999977655556655
No 492
>PRK01889 GTPase RsgA; Reviewed
Probab=85.99 E-value=0.1 Score=39.98 Aligned_cols=25 Identities=8% Similarity=-0.239 Sum_probs=17.7
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
+.+.+|+|||||++.+.....+..|
T Consensus 200 lvG~sgvGKStLin~L~g~~~~~~G 224 (356)
T PRK01889 200 LLGSSGVGKSTLVNALLGEEVQKTG 224 (356)
T ss_pred EECCCCccHHHHHHHHHHhccccee
Confidence 5678999999999976443334333
No 493
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=85.95 E-value=0.11 Score=35.56 Aligned_cols=25 Identities=12% Similarity=-0.237 Sum_probs=18.7
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|.+..|+|||||++-+.....|+.|
T Consensus 33 i~G~nGsGKStLl~~l~G~~~~~~G 57 (178)
T cd03247 33 LLGRSGSGKSTLLQLLTGDLKPQQG 57 (178)
T ss_pred EECCCCCCHHHHHHHHhccCCCCCC
Confidence 5678999999999976555555544
No 494
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=85.92 E-value=0.12 Score=37.81 Aligned_cols=25 Identities=12% Similarity=-0.095 Sum_probs=18.5
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|.+..|+|||||++-+.....|+.|
T Consensus 32 i~G~nGsGKSTLl~~l~Gl~~p~~G 56 (271)
T PRK13638 32 LVGANGCGKSTLFMNLSGLLRPQKG 56 (271)
T ss_pred EECCCCCCHHHHHHHHcCCCCCCcc
Confidence 5678999999999966554445544
No 495
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=85.89 E-value=0.22 Score=36.68 Aligned_cols=44 Identities=14% Similarity=0.077 Sum_probs=31.4
Q ss_pred cccCCCCCceeeeec---------eeeeeeeeeEEEEEEEE--C--CEEEEEEEcCC
Q 030931 3 RVKQPYCTSCTLVKF---------YLLFLLLVRFNVEKVQY--K--NVIFTVWDVGG 46 (169)
Q Consensus 3 ~~~~~~~Ktsll~~f---------~~~~~~t~~~~~~~~~~--~--~~~~~i~D~~G 46 (169)
.+..|-|||||+..+ .+...|++.....+.+. . ..++.|.||.|
T Consensus 48 vGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 48 VGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred eccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence 467899999999953 34556666666555544 2 46788899998
No 496
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=85.88 E-value=3.4 Score=30.13 Aligned_cols=66 Identities=20% Similarity=0.153 Sum_probs=38.1
Q ss_pred CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHH---HHHHHhcCCCCCCCeE-EEEEeCCCC
Q 030931 36 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQ---EFQAIIKDPFMLNSVI-LVFANKQDM 106 (169)
Q Consensus 36 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~---~~~~~~~~~~~~~~pi-ivv~nK~Dl 106 (169)
.+.+.|.||+|...... ....+..||.++++...+ ..++..... .+..... ..+.++ .++.|+.+.
T Consensus 115 ~yD~vIIDt~g~~~~~~-~~~al~~aD~vlip~~p~-~~~l~~~~~~~~~i~~~~~---~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 115 EYDVILFDVLGDVVCGG-FAAPLNYADYALIVTDND-FDSIFAANRIAAAVREKAK---TYKVRLAGLIANRTDK 184 (267)
T ss_pred cCCEEEEeCCCCccccc-chhhhhhcCEEEEEecCC-cccHHHHHHHHHHHHHHhh---ccCCceEEEEEeCCCH
Confidence 46788899987642221 122367799999998764 333444333 3333221 134543 478999984
No 497
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=85.88 E-value=0.1 Score=35.51 Aligned_cols=25 Identities=8% Similarity=-0.247 Sum_probs=18.9
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|.+..|+|||||++-+.....|+.|
T Consensus 33 i~G~nGsGKStLl~~l~G~~~~~~G 57 (173)
T cd03246 33 IIGPSGSGKSTLARLILGLLRPTSG 57 (173)
T ss_pred EECCCCCCHHHHHHHHHhccCCCCC
Confidence 5678999999999976555555554
No 498
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=85.83 E-value=0.13 Score=36.61 Aligned_cols=25 Identities=12% Similarity=-0.144 Sum_probs=20.0
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|+|||||++-+.....|+.|
T Consensus 53 i~G~nGsGKSTLl~~l~G~~~p~~G 77 (224)
T cd03220 53 LIGRNGAGKSTLLRLLAGIYPPDSG 77 (224)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCce
Confidence 5678999999999987666666666
No 499
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=85.80 E-value=0.11 Score=36.05 Aligned_cols=25 Identities=8% Similarity=-0.201 Sum_probs=20.0
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|.+..|+|||||++-+.....|+.|
T Consensus 31 i~G~nGsGKSTLl~~l~G~~~~~~G 55 (198)
T TIGR01189 31 VTGPNGIGKTTLLRILAGLLRPDSG 55 (198)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCcc
Confidence 5678899999999987666666665
No 500
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=85.80 E-value=0.12 Score=37.49 Aligned_cols=25 Identities=20% Similarity=-0.055 Sum_probs=18.1
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|+|||||++-+.....|+.|
T Consensus 33 l~G~nGsGKSTLl~~l~Gl~~~~~G 57 (255)
T PRK11231 33 LIGPNGCGKSTLLKCFARLLTPQSG 57 (255)
T ss_pred EECCCCCCHHHHHHHHhCCcCCCCc
Confidence 5678999999999966444444444
Done!