Query 030931
Match_columns 169
No_of_seqs 132 out of 1529
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 10:25:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030931.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030931hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fzq_A ADP-ribosylation factor 100.0 5.1E-34 1.8E-38 195.5 14.4 155 2-156 21-179 (181)
2 4dkx_A RAS-related protein RAB 100.0 8.4E-36 2.9E-40 209.6 4.8 150 1-156 17-177 (216)
3 1r8s_A ADP-ribosylation factor 100.0 4.9E-34 1.7E-38 192.0 13.0 155 2-156 5-163 (164)
4 1upt_A ARL1, ADP-ribosylation 100.0 3E-33 1E-37 189.2 15.0 155 2-156 12-170 (171)
5 2b6h_A ADP-ribosylation factor 100.0 3.1E-33 1.1E-37 193.3 14.3 154 2-155 34-191 (192)
6 1zj6_A ADP-ribosylation factor 100.0 1.9E-33 6.5E-38 193.3 13.0 159 2-160 21-183 (187)
7 4bas_A ADP-ribosylation factor 100.0 8.7E-34 3E-38 196.4 11.3 158 2-159 22-193 (199)
8 1ksh_A ARF-like protein 2; sma 100.0 8.9E-33 3E-37 189.7 13.9 155 2-156 23-181 (186)
9 1zd9_A ADP-ribosylation factor 100.0 4.6E-33 1.6E-37 191.7 12.2 155 2-156 27-186 (188)
10 2x77_A ADP-ribosylation factor 100.0 9.3E-33 3.2E-37 190.1 13.7 156 2-157 27-186 (189)
11 1moz_A ARL1, ADP-ribosylation 100.0 1.8E-32 6E-37 187.5 14.2 156 2-157 23-182 (183)
12 2h17_A ADP-ribosylation factor 100.0 1.2E-32 4.1E-37 188.5 11.9 151 2-152 26-180 (181)
13 1m2o_B GTP-binding protein SAR 100.0 2.3E-32 7.8E-37 188.7 13.0 151 2-152 28-189 (190)
14 2h57_A ADP-ribosylation factor 100.0 5.5E-32 1.9E-36 186.4 14.1 154 2-155 26-187 (190)
15 1f6b_A SAR1; gtpases, N-termin 100.0 1.9E-32 6.4E-37 190.3 11.6 151 2-152 30-196 (198)
16 3o47_A ADP-ribosylation factor 100.0 3.1E-31 1.1E-35 197.1 13.7 155 2-156 170-328 (329)
17 3lvq_E ARF-GAP with SH3 domain 100.0 7.8E-31 2.7E-35 204.6 13.5 160 2-161 327-490 (497)
18 3t5g_A GTP-binding protein RHE 100.0 2.3E-31 8E-36 181.7 5.3 160 2-168 11-180 (181)
19 3t1o_A Gliding protein MGLA; G 100.0 6.1E-30 2.1E-34 176.6 12.1 150 2-158 19-195 (198)
20 2fu5_C RAS-related protein RAB 100.0 5.2E-30 1.8E-34 175.3 11.6 152 2-159 13-175 (183)
21 3q72_A GTP-binding protein RAD 100.0 1.6E-30 5.5E-35 175.1 7.6 150 2-156 7-165 (166)
22 2hup_A RAS-related protein RAB 100.0 1E-29 3.5E-34 176.8 11.7 150 2-157 34-195 (201)
23 3ihw_A Centg3; RAS, centaurin, 100.0 2.4E-29 8.3E-34 172.7 12.4 146 2-157 25-182 (184)
24 1x3s_A RAS-related protein RAB 100.0 1.7E-29 5.7E-34 174.2 11.5 151 2-157 20-180 (195)
25 2bme_A RAB4A, RAS-related prot 100.0 2.2E-29 7.5E-34 172.5 11.9 160 2-167 15-185 (186)
26 3q3j_B RHO-related GTP-binding 100.0 3.5E-30 1.2E-34 180.9 7.7 152 2-160 32-208 (214)
27 2fn4_A P23, RAS-related protei 100.0 1.9E-30 6.4E-35 176.8 4.8 154 2-160 14-177 (181)
28 1ek0_A Protein (GTP-binding pr 100.0 1.5E-30 5E-35 175.6 3.9 147 2-154 8-168 (170)
29 3oes_A GTPase rhebl1; small GT 100.0 1.8E-30 6.3E-35 180.4 4.5 153 2-159 29-191 (201)
30 3bc1_A RAS-related protein RAB 100.0 3.6E-29 1.2E-33 172.2 10.6 152 2-158 16-188 (195)
31 3kkq_A RAS-related protein M-R 100.0 1.9E-29 6.6E-34 172.5 9.2 149 2-155 23-182 (183)
32 1c1y_A RAS-related protein RAP 100.0 6.1E-30 2.1E-34 172.2 5.9 149 2-154 8-166 (167)
33 2f7s_A C25KG, RAS-related prot 100.0 4.7E-29 1.6E-33 175.1 10.3 151 2-157 30-201 (217)
34 2o52_A RAS-related protein RAB 100.0 3.3E-29 1.1E-33 174.0 9.4 159 2-166 30-199 (200)
35 2ew1_A RAS-related protein RAB 100.0 4.4E-29 1.5E-33 173.7 10.0 151 2-158 31-192 (201)
36 3q85_A GTP-binding protein REM 100.0 6.8E-29 2.3E-33 167.6 10.6 150 2-156 7-168 (169)
37 4dsu_A GTPase KRAS, isoform 2B 100.0 3.5E-29 1.2E-33 171.8 9.2 152 2-157 9-168 (189)
38 2nzj_A GTP-binding protein REM 100.0 1.2E-29 4.2E-34 172.0 6.7 152 2-158 9-172 (175)
39 1u8z_A RAS-related protein RAL 100.0 4.3E-29 1.5E-33 167.9 9.2 149 2-155 9-167 (168)
40 3cbq_A GTP-binding protein REM 100.0 1.3E-29 4.5E-34 175.5 6.5 151 2-157 28-190 (195)
41 3reg_A RHO-like small GTPase; 100.0 5.3E-29 1.8E-33 172.0 9.4 149 2-157 28-190 (194)
42 2g6b_A RAS-related protein RAB 100.0 1.2E-29 4E-34 172.9 6.0 150 2-157 15-176 (180)
43 3tkl_A RAS-related protein RAB 100.0 5.4E-28 1.8E-32 166.9 14.2 153 2-160 21-184 (196)
44 3gj0_A GTP-binding nuclear pro 100.0 3.1E-29 1E-33 176.6 8.0 150 2-158 20-178 (221)
45 3tw8_B RAS-related protein RAB 100.0 1.2E-29 4.1E-34 172.9 5.7 151 2-159 14-175 (181)
46 2bov_A RAla, RAS-related prote 100.0 1.6E-28 5.5E-33 170.7 11.5 151 2-157 19-179 (206)
47 1wms_A RAB-9, RAB9, RAS-relate 100.0 1.4E-28 4.6E-33 167.2 10.7 151 2-156 12-175 (177)
48 2hxs_A RAB-26, RAS-related pro 100.0 3.4E-29 1.2E-33 170.4 7.7 151 2-157 11-175 (178)
49 2a9k_A RAS-related protein RAL 100.0 1.1E-28 3.8E-33 168.9 10.1 151 2-157 23-183 (187)
50 3dz8_A RAS-related protein RAB 100.0 5.1E-30 1.8E-34 176.8 3.4 150 2-157 28-188 (191)
51 1zbd_A Rabphilin-3A; G protein 100.0 2.3E-28 7.8E-33 169.8 11.8 150 2-157 13-173 (203)
52 2gf9_A RAS-related protein RAB 100.0 1.7E-28 5.7E-33 168.9 10.8 150 2-157 27-187 (189)
53 2yc2_C IFT27, small RAB-relate 100.0 1.1E-28 3.9E-33 171.7 10.1 151 2-157 25-194 (208)
54 2oil_A CATX-8, RAS-related pro 100.0 3E-28 1E-32 168.0 12.0 150 2-157 30-190 (193)
55 2a5j_A RAS-related protein RAB 100.0 1.8E-28 6.2E-33 169.0 10.7 150 2-157 26-186 (191)
56 2efe_B Small GTP-binding prote 100.0 1.2E-28 4.3E-33 168.0 9.4 150 2-157 17-177 (181)
57 1r2q_A RAS-related protein RAB 100.0 1E-28 3.6E-33 166.5 8.8 147 2-154 11-168 (170)
58 1z08_A RAS-related protein RAB 100.0 7.5E-29 2.6E-33 167.4 7.9 148 2-155 11-169 (170)
59 1g16_A RAS-related protein SEC 100.0 5.7E-29 1.9E-33 167.9 7.2 149 2-156 8-166 (170)
60 2fg5_A RAB-22B, RAS-related pr 100.0 1.7E-28 5.7E-33 169.4 9.6 149 2-156 28-187 (192)
61 2atx_A Small GTP binding prote 100.0 2.3E-28 7.7E-33 168.8 9.9 147 2-155 23-193 (194)
62 2bcg_Y Protein YP2, GTP-bindin 100.0 2.8E-28 9.7E-33 169.8 10.2 149 2-156 13-172 (206)
63 2g3y_A GTP-binding protein GEM 100.0 2.6E-29 8.8E-34 176.0 4.8 151 2-157 42-205 (211)
64 1z0j_A RAB-22, RAS-related pro 100.0 3.8E-29 1.3E-33 168.8 5.4 147 2-154 11-168 (170)
65 1z2a_A RAS-related protein RAB 100.0 4.7E-29 1.6E-33 168.0 5.7 147 2-155 10-167 (168)
66 1z0f_A RAB14, member RAS oncog 100.0 2.5E-28 8.6E-33 166.0 9.2 148 2-155 20-178 (179)
67 1kao_A RAP2A; GTP-binding prot 100.0 1.8E-29 6E-34 169.7 3.4 149 2-155 8-166 (167)
68 2ce2_X GTPase HRAS; signaling 100.0 3.6E-28 1.2E-32 163.0 9.8 149 2-155 8-165 (166)
69 3cpj_B GTP-binding protein YPT 100.0 2.8E-28 9.6E-33 172.0 9.5 151 2-158 18-179 (223)
70 1vg8_A RAS-related protein RAB 100.0 2.1E-28 7.1E-33 170.4 8.7 152 2-157 13-177 (207)
71 4djt_A GTP-binding nuclear pro 100.0 1.4E-28 4.7E-33 172.8 7.7 151 2-158 16-178 (218)
72 1z06_A RAS-related protein RAB 100.0 1.6E-29 5.3E-34 174.0 2.8 149 2-155 25-188 (189)
73 2iwr_A Centaurin gamma 1; ANK 100.0 7.7E-28 2.6E-32 163.8 11.1 148 2-158 12-172 (178)
74 2il1_A RAB12; G-protein, GDP, 100.0 3.3E-28 1.1E-32 167.9 9.4 149 2-155 31-190 (192)
75 2q3h_A RAS homolog gene family 100.0 4.2E-28 1.4E-32 168.3 10.0 149 2-157 25-197 (201)
76 2atv_A RERG, RAS-like estrogen 100.0 2.9E-28 9.9E-33 168.6 9.0 150 2-157 33-193 (196)
77 1ky3_A GTP-binding protein YPT 100.0 9.2E-29 3.2E-33 168.6 5.9 152 2-157 13-180 (182)
78 3clv_A RAB5 protein, putative; 99.9 1.1E-27 3.6E-32 166.0 11.3 148 2-157 12-206 (208)
79 2p5s_A RAS and EF-hand domain 99.9 2.1E-28 7E-33 169.8 7.6 148 2-155 33-197 (199)
80 3c5c_A RAS-like protein 12; GD 99.9 1.7E-29 5.7E-34 173.8 2.0 148 2-155 26-186 (187)
81 1m7b_A RND3/RHOE small GTP-bin 99.9 3.4E-28 1.2E-32 166.7 8.4 147 2-155 12-183 (184)
82 2j0v_A RAC-like GTP-binding pr 99.9 1.6E-28 5.5E-33 171.8 6.5 150 2-158 14-183 (212)
83 2erx_A GTP-binding protein DI- 99.9 2.8E-29 9.6E-34 169.6 2.5 150 2-156 8-168 (172)
84 2gf0_A GTP-binding protein DI- 99.9 2E-28 7E-33 169.4 6.8 151 2-157 13-173 (199)
85 3con_A GTPase NRAS; structural 99.9 8E-28 2.7E-32 165.4 9.3 151 2-157 26-185 (190)
86 2y8e_A RAB-protein 6, GH09086P 99.9 4.1E-29 1.4E-33 169.9 2.7 148 2-155 19-177 (179)
87 3cph_A RAS-related protein SEC 99.9 9.3E-28 3.2E-32 167.8 9.1 150 2-157 25-184 (213)
88 1gwn_A RHO-related GTP-binding 99.9 9.3E-28 3.2E-32 167.5 8.5 147 2-155 33-204 (205)
89 2j1l_A RHO-related GTP-binding 99.9 9.6E-28 3.3E-32 168.3 8.4 154 2-157 39-211 (214)
90 2fv8_A H6, RHO-related GTP-bin 99.9 2.5E-27 8.5E-32 165.3 10.4 154 2-157 30-202 (207)
91 2zej_A Dardarin, leucine-rich 99.9 6.3E-29 2.2E-33 170.5 2.2 151 2-158 7-181 (184)
92 3bwd_D RAC-like GTP-binding pr 99.9 1.7E-28 5.9E-33 167.4 4.2 147 2-155 13-181 (182)
93 3r7w_B Gtpase2, GTP-binding pr 99.9 2.1E-28 7.3E-33 179.8 4.9 151 2-156 4-175 (331)
94 3l0i_B RAS-related protein RAB 99.9 2.9E-29 1E-33 174.1 0.2 146 2-156 38-197 (199)
95 2fh5_B SR-beta, signal recogni 99.9 3E-27 1E-31 165.5 10.4 150 2-152 12-213 (214)
96 2gco_A H9, RHO-related GTP-bin 99.9 1.9E-27 6.3E-32 165.3 9.2 152 2-155 30-200 (201)
97 4gzl_A RAS-related C3 botulinu 99.9 1.7E-27 5.7E-32 166.0 7.9 150 2-153 35-203 (204)
98 2cjw_A GTP-binding protein GEM 99.9 1.6E-28 5.4E-33 169.7 2.5 151 2-157 11-174 (192)
99 1mh1_A RAC1; GTP-binding, GTPa 99.9 2.1E-27 7.2E-32 162.4 7.7 154 2-157 10-182 (186)
100 3th5_A RAS-related C3 botulinu 99.9 3.1E-28 1.1E-32 169.4 0.0 150 2-153 35-203 (204)
101 3llu_A RAS-related GTP-binding 99.9 2.1E-27 7.2E-32 164.4 3.0 150 1-153 24-195 (196)
102 2lkc_A Translation initiation 99.9 6E-26 2.1E-30 154.2 8.5 151 2-158 13-174 (178)
103 2qu8_A Putative nucleolar GTP- 99.9 1.6E-25 5.5E-30 158.4 9.8 153 2-157 34-207 (228)
104 3r7w_A Gtpase1, GTP-binding pr 99.9 1.7E-26 5.7E-31 170.2 3.7 152 2-154 8-180 (307)
105 2wkq_A NPH1-1, RAS-related C3 99.9 4.4E-25 1.5E-29 163.7 9.4 153 2-156 160-331 (332)
106 2wji_A Ferrous iron transport 99.9 6.9E-25 2.4E-29 147.8 8.9 137 2-153 8-163 (165)
107 2dyk_A GTP-binding protein; GT 99.9 1.9E-25 6.4E-30 149.4 5.7 139 2-153 6-160 (161)
108 2gj8_A MNME, tRNA modification 99.9 2.4E-25 8.4E-30 151.1 5.1 142 2-155 9-166 (172)
109 3c5h_A Glucocorticoid receptor 99.9 1.8E-25 6.1E-30 160.8 1.1 144 7-154 38-254 (255)
110 1svi_A GTP-binding protein YSX 99.9 1.3E-24 4.3E-29 149.9 5.1 141 2-154 28-194 (195)
111 1cip_A Protein (guanine nucleo 99.9 1.3E-23 4.4E-28 157.0 10.8 137 21-157 177-346 (353)
112 2wjg_A FEOB, ferrous iron tran 99.9 8.8E-24 3E-28 144.8 8.9 141 2-157 12-171 (188)
113 2cxx_A Probable GTP-binding pr 99.9 6.2E-26 2.1E-30 155.7 -2.0 153 2-157 6-186 (190)
114 2f9l_A RAB11B, member RAS onco 99.9 3.1E-24 1E-28 148.8 6.2 150 2-157 10-170 (199)
115 3iby_A Ferrous iron transport 99.9 6.1E-24 2.1E-28 152.7 6.8 136 2-152 6-164 (256)
116 3pqc_A Probable GTP-binding pr 99.9 1.2E-24 4.1E-29 149.7 2.5 147 2-155 28-194 (195)
117 1zcb_A G alpha I/13; GTP-bindi 99.9 4.6E-23 1.6E-27 154.5 10.9 137 21-157 185-355 (362)
118 3a1s_A Iron(II) transport prot 99.9 4.2E-23 1.4E-27 148.6 10.2 139 2-155 10-167 (258)
119 3iev_A GTP-binding protein ERA 99.9 2.1E-23 7.2E-28 153.7 8.2 149 2-156 15-183 (308)
120 3ohm_A Guanine nucleotide-bind 99.9 6.6E-23 2.3E-27 151.3 10.0 137 21-157 151-320 (327)
121 1oix_A RAS-related protein RAB 99.9 1.9E-23 6.7E-28 144.0 5.5 146 2-153 34-190 (191)
122 1azs_C GS-alpha; complex (lyas 99.9 5.6E-23 1.9E-27 155.3 6.3 136 22-157 202-387 (402)
123 3i8s_A Ferrous iron transport 99.9 7.4E-23 2.5E-27 148.5 6.7 140 2-156 8-170 (274)
124 1wf3_A GTP-binding protein; GT 99.9 8.2E-23 2.8E-27 150.0 7.1 145 2-155 12-173 (301)
125 3dpu_A RAB family protein; roc 99.9 1.1E-23 3.8E-28 165.6 2.0 146 2-157 46-210 (535)
126 4dhe_A Probable GTP-binding pr 99.9 5.2E-24 1.8E-28 149.8 -0.0 152 2-158 34-214 (223)
127 3b1v_A Ferrous iron uptake tra 99.9 4.3E-23 1.5E-27 149.5 4.6 138 2-155 8-164 (272)
128 3gee_A MNME, tRNA modification 99.9 3.4E-22 1.2E-26 154.6 9.6 139 2-154 238-397 (476)
129 3k53_A Ferrous iron transport 99.9 8.2E-22 2.8E-26 142.8 10.7 142 2-157 8-168 (271)
130 2hjg_A GTP-binding protein ENG 99.9 4.7E-23 1.6E-27 158.4 4.1 150 2-156 180-350 (436)
131 1lnz_A SPO0B-associated GTP-bi 99.9 1.3E-22 4.6E-27 151.0 6.4 151 2-158 163-333 (342)
132 4fid_A G protein alpha subunit 99.9 1.9E-22 6.6E-27 149.3 6.5 135 21-155 145-328 (340)
133 3qq5_A Small GTP-binding prote 99.9 4.9E-22 1.7E-26 151.5 8.2 143 2-156 39-197 (423)
134 1xzp_A Probable tRNA modificat 99.9 2E-21 6.9E-26 150.4 10.6 141 2-155 248-405 (482)
135 1mky_A Probable GTP-binding pr 99.9 1.3E-21 4.5E-26 150.4 9.5 144 2-156 6-167 (439)
136 2xtz_A Guanine nucleotide-bind 99.9 1.8E-22 6.2E-27 150.8 4.4 134 24-157 164-347 (354)
137 2e87_A Hypothetical protein PH 99.9 1.6E-21 5.6E-26 146.3 9.3 148 2-156 172-337 (357)
138 4dcu_A GTP-binding protein ENG 99.8 3.1E-22 1.1E-26 154.6 4.1 151 2-157 200-371 (456)
139 1nrj_B SR-beta, signal recogni 99.8 9.2E-24 3.2E-28 148.1 -4.8 135 2-141 17-170 (218)
140 2hjg_A GTP-binding protein ENG 99.8 7E-22 2.4E-26 151.9 4.8 141 2-155 8-165 (436)
141 3sjy_A Translation initiation 99.8 3.2E-21 1.1E-25 146.8 6.8 151 2-157 13-194 (403)
142 2elf_A Protein translation elo 99.8 1.2E-20 4E-25 142.0 9.4 145 2-156 26-181 (370)
143 3cb4_D GTP-binding protein LEP 99.8 1.5E-20 5.2E-25 148.6 9.9 146 2-157 9-184 (599)
144 3tr5_A RF-3, peptide chain rel 99.8 9.8E-21 3.3E-25 148.1 8.5 103 2-109 18-149 (528)
145 3geh_A MNME, tRNA modification 99.8 3.6E-21 1.2E-25 148.4 4.9 142 2-157 229-386 (462)
146 3l82_B F-box only protein 4; T 99.8 1.5E-20 5E-25 129.2 7.3 112 44-157 109-225 (227)
147 3izy_P Translation initiation 99.8 6.5E-22 2.2E-26 154.5 0.3 148 2-155 9-168 (537)
148 1u0l_A Probable GTPase ENGC; p 99.8 3.1E-21 1.1E-25 141.7 3.6 127 12-151 32-169 (301)
149 2ywe_A GTP-binding protein LEP 99.8 2.5E-20 8.4E-25 147.3 8.1 149 2-157 11-186 (600)
150 1wb1_A Translation elongation 99.8 9.3E-21 3.2E-25 147.1 4.1 146 2-155 24-189 (482)
151 1s0u_A EIF-2-gamma, translatio 99.8 3.4E-20 1.2E-24 141.4 7.1 150 2-156 13-199 (408)
152 3j2k_7 ERF3, eukaryotic polype 99.8 9.1E-20 3.1E-24 140.1 8.8 142 2-147 22-217 (439)
153 1mky_A Probable GTP-binding pr 99.8 4.1E-20 1.4E-24 142.2 6.7 150 2-156 185-356 (439)
154 1g7s_A Translation initiation 99.8 8.3E-20 2.9E-24 144.5 8.3 147 2-156 10-219 (594)
155 2qtf_A Protein HFLX, GTP-bindi 99.8 7E-20 2.4E-24 137.5 7.5 150 2-159 184-358 (364)
156 2ged_A SR-beta, signal recogni 99.8 4.9E-21 1.7E-25 131.7 0.9 118 2-119 53-181 (193)
157 4dcu_A GTP-binding protein ENG 99.8 1.1E-20 3.7E-25 146.0 2.7 142 2-155 28-185 (456)
158 1jny_A EF-1-alpha, elongation 99.8 1.1E-20 3.9E-25 145.1 2.6 142 2-147 11-205 (435)
159 1zo1_I IF2, translation initia 99.8 8.7E-21 3E-25 147.0 0.6 142 2-152 9-164 (501)
160 1ega_A Protein (GTP-binding pr 99.8 5.5E-20 1.9E-24 135.0 4.6 144 2-155 13-175 (301)
161 1d2e_A Elongation factor TU (E 99.8 8.6E-20 2.9E-24 138.7 5.5 150 2-156 8-196 (397)
162 1kk1_A EIF2gamma; initiation o 99.8 4.6E-20 1.6E-24 140.8 3.7 146 2-156 15-201 (410)
163 2c78_A Elongation factor TU-A; 99.8 8.1E-20 2.8E-24 139.2 5.0 149 2-155 16-212 (405)
164 1zun_B Sulfate adenylate trans 99.8 2.5E-19 8.7E-24 137.6 7.7 116 27-146 94-215 (434)
165 3p26_A Elongation factor 1 alp 99.8 5.7E-20 1.9E-24 142.9 3.5 140 2-144 38-227 (483)
166 3l2o_B F-box only protein 4; s 99.8 3.4E-19 1.2E-23 127.9 6.1 112 44-157 194-310 (312)
167 2xtp_A GTPase IMAP family memb 99.8 6.1E-19 2.1E-23 126.8 7.0 150 2-157 27-210 (260)
168 1dar_A EF-G, elongation factor 99.8 4.7E-18 1.6E-22 136.9 11.2 103 2-109 17-144 (691)
169 2h5e_A Peptide chain release f 99.8 1.5E-18 5.1E-23 135.9 7.9 103 2-109 18-149 (529)
170 3izq_1 HBS1P, elongation facto 99.7 8.2E-20 2.8E-24 145.2 0.2 141 2-145 172-362 (611)
171 3t5d_A Septin-7; GTP-binding p 99.7 1.7E-19 5.7E-24 130.9 1.0 148 1-154 12-203 (274)
172 1f60_A Elongation factor EEF1A 99.7 3.8E-19 1.3E-23 137.3 2.6 140 2-145 12-202 (458)
173 1r5b_A Eukaryotic peptide chai 99.7 2.1E-19 7.3E-24 139.0 1.0 141 2-146 48-243 (467)
174 2aka_B Dynamin-1; fusion prote 99.7 2.5E-18 8.7E-23 125.8 6.4 113 36-153 124-251 (299)
175 2qag_A Septin-2, protein NEDD5 99.7 3E-19 1E-23 134.1 0.7 148 1-157 41-235 (361)
176 3lxw_A GTPase IMAP family memb 99.7 1.1E-17 3.8E-22 119.6 8.8 154 2-157 26-210 (247)
177 1pui_A ENGB, probable GTP-bind 99.7 4E-18 1.4E-22 118.6 5.5 144 2-156 31-200 (210)
178 2rdo_7 EF-G, elongation factor 99.7 4.9E-17 1.7E-21 131.2 12.1 103 2-109 15-149 (704)
179 2xex_A Elongation factor G; GT 99.7 4.6E-17 1.6E-21 131.2 10.6 103 2-109 15-142 (693)
180 2dy1_A Elongation factor G; tr 99.7 2.2E-17 7.4E-22 132.6 8.7 101 2-107 14-139 (665)
181 3mca_A HBS1, elongation factor 99.7 5.5E-19 1.9E-23 140.0 -1.0 138 2-143 182-371 (592)
182 3avx_A Elongation factor TS, e 99.7 4.1E-18 1.4E-22 141.4 3.7 149 2-155 301-486 (1289)
183 3lxx_A GTPase IMAP family memb 99.7 1.2E-17 4E-22 118.8 5.5 153 2-156 34-215 (239)
184 1udx_A The GTP-binding protein 99.7 5.8E-17 2E-21 123.3 6.5 151 2-158 162-328 (416)
185 1jwy_B Dynamin A GTPase domain 99.6 5.3E-16 1.8E-20 114.3 7.4 116 36-156 130-263 (315)
186 3def_A T7I23.11 protein; chlor 99.6 5.3E-16 1.8E-20 111.7 5.4 105 2-107 41-164 (262)
187 2j69_A Bacterial dynamin-like 99.6 6.9E-16 2.4E-20 124.4 4.2 115 37-156 174-326 (695)
188 3t34_A Dynamin-related protein 99.6 3.9E-16 1.3E-20 117.2 2.4 110 36-153 135-259 (360)
189 3vqt_A RF-3, peptide chain rel 99.6 1.1E-14 3.9E-19 114.5 10.2 78 27-109 90-167 (548)
190 2x2e_A Dynamin-1; nitration, h 99.5 2.7E-15 9.1E-20 112.4 3.2 111 36-151 129-254 (353)
191 1h65_A Chloroplast outer envel 99.5 3.8E-15 1.3E-19 107.7 3.4 106 2-108 44-168 (270)
192 3p32_A Probable GTPase RV1496/ 99.5 6.7E-16 2.3E-20 115.7 -0.6 110 35-156 170-285 (355)
193 1yrb_A ATP(GTP)binding protein 99.5 6.2E-16 2.1E-20 111.0 -1.8 115 37-155 109-257 (262)
194 1n0u_A EF-2, elongation factor 99.5 1E-14 3.5E-19 119.8 4.9 101 2-107 24-163 (842)
195 2qnr_A Septin-2, protein NEDD5 99.5 1.3E-15 4.6E-20 111.7 -2.2 149 1-157 22-216 (301)
196 1wxq_A GTP-binding protein; st 99.5 1.7E-15 5.7E-20 115.0 -1.8 72 2-73 5-114 (397)
197 2yv5_A YJEQ protein; hydrolase 99.5 9.4E-15 3.2E-19 107.2 2.1 95 47-150 66-164 (302)
198 2wsm_A Hydrogenase expression/ 99.5 4.4E-15 1.5E-19 104.0 0.2 107 36-157 108-216 (221)
199 2p67_A LAO/AO transport system 99.5 2.4E-14 8.2E-19 106.8 3.6 108 35-154 147-260 (341)
200 3j25_A Tetracycline resistance 99.4 1.7E-14 6E-19 115.3 1.4 149 4-157 9-241 (638)
201 2www_A Methylmalonic aciduria 99.4 2.1E-13 7E-18 102.0 5.4 109 35-155 165-279 (349)
202 1jal_A YCHF protein; nucleotid 99.4 1E-12 3.4E-17 98.2 8.0 71 2-72 7-108 (363)
203 2qag_C Septin-7; cell cycle, c 99.4 2.8E-14 9.7E-19 108.6 -0.7 146 1-154 35-226 (418)
204 4fn5_A EF-G 1, elongation fact 99.3 3.8E-12 1.3E-16 103.0 10.0 69 36-109 84-152 (709)
205 2qpt_A EH domain-containing pr 99.3 1.9E-13 6.3E-18 107.7 1.3 68 38-109 155-233 (550)
206 3zvr_A Dynamin-1; hydrolase, D 99.3 4.3E-12 1.5E-16 102.6 6.7 110 37-151 150-274 (772)
207 2dby_A GTP-binding protein; GD 99.3 9.1E-12 3.1E-16 93.5 7.6 71 2-72 6-111 (368)
208 4a9a_A Ribosome-interacting GT 99.3 2E-11 6.7E-16 91.7 9.1 103 2-106 77-194 (376)
209 2hf9_A Probable hydrogenase ni 99.3 5.5E-16 1.9E-20 109.0 -14.9 59 94-155 164-224 (226)
210 3h2y_A GTPase family protein; 99.2 2.2E-12 7.7E-17 97.0 1.2 115 46-168 55-175 (368)
211 2qm8_A GTPase/ATPase; G protei 99.2 9.3E-12 3.2E-16 92.6 4.2 108 35-154 146-260 (337)
212 3ec1_A YQEH GTPase; atnos1, at 99.2 5.5E-12 1.9E-16 94.9 1.2 116 45-168 56-177 (369)
213 1puj_A YLQF, conserved hypothe 99.1 4.8E-11 1.7E-15 86.6 3.5 103 41-155 3-106 (282)
214 2ohf_A Protein OLA1, GTP-bindi 98.9 6.2E-10 2.1E-14 84.0 2.6 73 2-74 27-130 (396)
215 3cnl_A YLQF, putative uncharac 98.6 7.4E-10 2.5E-14 79.6 -3.5 94 44-152 4-98 (262)
216 2j37_W Signal recognition part 98.4 2E-07 6.9E-12 72.6 4.9 110 35-152 182-310 (504)
217 1ni3_A YCHF GTPase, YCHF GTP-b 98.2 5.9E-07 2E-11 67.9 3.5 71 2-72 25-127 (392)
218 2rcn_A Probable GTPase ENGC; Y 98.2 4.6E-07 1.6E-11 67.6 1.9 84 57-149 127-213 (358)
219 1t9h_A YLOQ, probable GTPase E 98.1 7.1E-07 2.4E-11 65.4 2.0 87 53-148 79-170 (307)
220 2qag_B Septin-6, protein NEDD5 97.8 5.1E-06 1.7E-10 63.4 2.1 128 2-136 47-217 (427)
221 3ec1_A YQEH GTPase; atnos1, at 97.8 6.3E-07 2.2E-11 67.4 -3.2 101 2-108 167-288 (369)
222 1tq4_A IIGP1, interferon-induc 97.7 1.9E-05 6.4E-10 60.1 3.2 147 2-157 74-255 (413)
223 3h2y_A GTPase family protein; 97.7 1.7E-06 5.9E-11 65.0 -3.0 101 2-108 165-287 (368)
224 3sop_A Neuronal-specific septi 97.5 2E-05 6.9E-10 56.7 0.6 102 1-108 6-154 (270)
225 3cnl_A YLQF, putative uncharac 97.0 1.9E-05 6.4E-10 56.6 -4.1 48 1-49 103-156 (262)
226 2v3c_C SRP54, signal recogniti 96.9 0.00065 2.2E-08 52.1 3.8 65 35-107 179-251 (432)
227 3szr_A Interferon-induced GTP- 96.9 0.00016 5.3E-09 57.8 0.1 68 38-109 148-229 (608)
228 1puj_A YLQF, conserved hypothe 96.8 9.6E-05 3.3E-09 53.5 -1.3 46 2-48 125-176 (282)
229 3kl4_A SRP54, signal recogniti 96.6 0.0015 5.3E-08 49.9 3.8 65 36-107 179-251 (433)
230 1bif_A 6-phosphofructo-2-kinas 96.3 6.8E-05 2.3E-09 58.0 -5.5 84 2-86 44-145 (469)
231 1f5n_A Interferon-induced guan 95.7 0.0028 9.5E-08 50.4 1.0 48 2-49 43-103 (592)
232 3dm5_A SRP54, signal recogniti 95.0 0.068 2.3E-06 41.0 6.8 65 36-107 182-252 (443)
233 3ea0_A ATPase, para family; al 95.0 0.25 8.5E-06 34.1 9.3 82 36-121 118-199 (245)
234 4dzz_A Plasmid partitioning pr 94.8 0.11 3.7E-06 34.9 6.8 69 35-107 74-143 (206)
235 1np6_A Molybdopterin-guanine d 94.2 0.018 6.3E-07 38.4 1.7 103 2-106 11-125 (174)
236 3e70_C DPA, signal recognition 94.0 0.021 7.1E-07 42.1 1.9 64 36-106 211-280 (328)
237 3end_A Light-independent proto 93.9 0.49 1.7E-05 34.1 9.0 81 36-120 156-237 (307)
238 3k9g_A PF-32 protein; ssgcid, 93.2 0.66 2.3E-05 32.6 8.6 66 35-105 143-208 (267)
239 3cwq_A Para family chromosome 92.3 0.42 1.4E-05 32.5 6.2 68 35-108 66-134 (209)
240 1g3q_A MIND ATPase, cell divis 91.7 1.6 5.5E-05 29.8 8.8 79 36-120 111-190 (237)
241 2ph1_A Nucleotide-binding prot 91.7 0.85 2.9E-05 32.0 7.4 67 35-106 127-194 (262)
242 1j8m_F SRP54, signal recogniti 90.7 0.85 2.9E-05 32.9 6.7 65 35-107 179-252 (297)
243 3q9l_A Septum site-determining 90.1 0.81 2.8E-05 31.8 6.1 82 36-120 113-204 (260)
244 2cbz_A Multidrug resistance-as 90.1 0.039 1.3E-06 38.7 -0.9 25 2-26 36-60 (237)
245 3tif_A Uncharacterized ABC tra 89.6 0.033 1.1E-06 38.9 -1.5 25 2-26 36-60 (235)
246 1wcv_1 SOJ, segregation protei 89.4 0.78 2.7E-05 32.1 5.5 69 35-107 110-182 (257)
247 2pcj_A ABC transporter, lipopr 89.0 0.038 1.3E-06 38.3 -1.5 25 2-26 35-59 (224)
248 3kjh_A CO dehydrogenase/acetyl 88.8 0.94 3.2E-05 31.1 5.6 66 35-106 130-195 (254)
249 2onk_A Molybdate/tungstate ABC 88.6 0.041 1.4E-06 38.6 -1.6 25 2-26 29-53 (240)
250 4gp7_A Metallophosphoesterase; 88.5 0.049 1.7E-06 35.9 -1.2 16 2-17 14-29 (171)
251 1sgw_A Putative ABC transporte 88.5 0.043 1.5E-06 37.8 -1.5 25 2-26 40-64 (214)
252 2qi9_C Vitamin B12 import ATP- 88.3 0.049 1.7E-06 38.5 -1.4 24 2-26 31-54 (249)
253 1g6h_A High-affinity branched- 88.2 0.048 1.6E-06 38.6 -1.5 25 2-26 38-62 (257)
254 2pze_A Cystic fibrosis transme 88.2 0.047 1.6E-06 38.0 -1.5 25 2-26 39-63 (229)
255 1ji0_A ABC transporter; ATP bi 88.1 0.049 1.7E-06 38.2 -1.5 25 2-26 37-61 (240)
256 1b0u_A Histidine permease; ABC 88.1 0.049 1.7E-06 38.7 -1.5 25 2-26 37-61 (262)
257 2ff7_A Alpha-hemolysin translo 88.1 0.049 1.7E-06 38.4 -1.5 25 2-26 40-64 (247)
258 1vpl_A ABC transporter, ATP-bi 88.0 0.05 1.7E-06 38.6 -1.5 25 2-26 46-70 (256)
259 2olj_A Amino acid ABC transpor 87.7 0.054 1.8E-06 38.6 -1.5 25 2-26 55-79 (263)
260 2nq2_C Hypothetical ABC transp 87.6 0.054 1.8E-06 38.3 -1.5 25 2-26 36-60 (253)
261 3gfo_A Cobalt import ATP-bindi 87.5 0.056 1.9E-06 38.8 -1.5 25 2-26 39-63 (275)
262 1u0l_A Probable GTPase ENGC; p 87.4 0.044 1.5E-06 39.8 -2.1 25 2-26 174-198 (301)
263 1mv5_A LMRA, multidrug resista 87.4 0.048 1.6E-06 38.3 -1.9 25 2-26 33-57 (243)
264 2ixe_A Antigen peptide transpo 87.4 0.058 2E-06 38.6 -1.5 25 2-26 50-74 (271)
265 1ye8_A Protein THEP1, hypothet 87.3 0.066 2.3E-06 35.7 -1.2 16 2-17 5-20 (178)
266 2ihy_A ABC transporter, ATP-bi 87.2 0.059 2E-06 38.7 -1.5 25 2-26 52-76 (279)
267 2d2e_A SUFC protein; ABC-ATPas 87.1 0.077 2.6E-06 37.4 -0.9 25 2-26 34-60 (250)
268 4g1u_C Hemin import ATP-bindin 86.9 0.051 1.7E-06 38.8 -2.0 25 2-26 42-66 (266)
269 2bbs_A Cystic fibrosis transme 86.9 0.077 2.6E-06 38.4 -1.1 25 2-26 69-93 (290)
270 3q5d_A Atlastin-1; G protein, 86.8 0.073 2.5E-06 40.9 -1.3 16 2-17 72-87 (447)
271 1hyq_A MIND, cell division inh 86.7 1.4 5E-05 30.6 5.6 66 36-107 110-175 (263)
272 2yz2_A Putative ABC transporte 86.7 0.066 2.3E-06 38.1 -1.5 25 2-26 38-62 (266)
273 2yv5_A YJEQ protein; hydrolase 86.5 0.049 1.7E-06 39.5 -2.3 24 2-26 170-193 (302)
274 3c8u_A Fructokinase; YP_612366 86.1 0.1 3.5E-06 35.5 -0.8 22 2-23 27-48 (208)
275 2pjz_A Hypothetical protein ST 86.0 0.077 2.6E-06 37.8 -1.4 24 2-26 35-58 (263)
276 1kgd_A CASK, peripheral plasma 85.9 0.062 2.1E-06 35.7 -1.9 17 2-18 10-26 (180)
277 2bbw_A Adenylate kinase 4, AK4 85.8 0.062 2.1E-06 37.6 -2.0 17 2-18 32-48 (246)
278 2rcn_A Probable GTPase ENGC; Y 85.6 0.06 2E-06 40.2 -2.2 25 2-26 220-245 (358)
279 2j41_A Guanylate kinase; GMP, 85.1 0.072 2.5E-06 35.9 -1.9 20 2-21 11-30 (207)
280 3bfv_A CAPA1, CAPB2, membrane 85.0 3.5 0.00012 29.2 6.8 66 36-107 191-257 (271)
281 2zu0_C Probable ATP-dependent 84.9 0.12 4E-06 36.9 -1.0 25 2-26 51-77 (267)
282 1zp6_A Hypothetical protein AT 84.6 0.091 3.1E-06 34.9 -1.6 19 2-20 14-32 (191)
283 1t9h_A YLOQ, probable GTPase E 84.3 0.03 1E-06 40.9 -4.3 25 2-26 178-202 (307)
284 3b85_A Phosphate starvation-in 84.1 0.16 5.3E-06 34.8 -0.6 24 2-26 27-50 (208)
285 1cp2_A CP2, nitrogenase iron p 84.0 3.8 0.00013 28.5 6.7 70 36-106 115-186 (269)
286 3tr0_A Guanylate kinase, GMP k 83.9 0.12 4.1E-06 34.7 -1.2 18 2-19 12-29 (205)
287 1znw_A Guanylate kinase, GMP k 83.0 0.14 4.8E-06 34.8 -1.2 16 2-17 25-40 (207)
288 3fvq_A Fe(3+) IONS import ATP- 82.9 0.12 4.1E-06 38.6 -1.6 25 2-26 35-59 (359)
289 3nh6_A ATP-binding cassette SU 82.8 0.078 2.7E-06 38.7 -2.6 25 2-26 85-109 (306)
290 3tui_C Methionine import ATP-b 82.7 0.12 4.2E-06 38.6 -1.6 25 2-26 59-83 (366)
291 1z47_A CYSA, putative ABC-tran 82.7 0.12 4.2E-06 38.4 -1.6 25 2-26 46-70 (355)
292 1lvg_A Guanylate kinase, GMP k 82.7 0.15 5E-06 34.5 -1.2 16 2-17 9-24 (198)
293 3asz_A Uridine kinase; cytidin 82.3 0.15 5.2E-06 34.5 -1.2 19 2-20 11-29 (211)
294 2yyz_A Sugar ABC transporter, 82.3 0.13 4.5E-06 38.4 -1.6 25 2-26 34-58 (359)
295 2it1_A 362AA long hypothetical 82.3 0.13 4.5E-06 38.4 -1.6 25 2-26 34-58 (362)
296 2kjq_A DNAA-related protein; s 82.2 0.2 6.9E-06 32.2 -0.6 18 2-19 41-58 (149)
297 1g29_1 MALK, maltose transport 82.1 0.14 4.6E-06 38.5 -1.6 25 2-26 34-58 (372)
298 3a00_A Guanylate kinase, GMP k 82.0 0.13 4.6E-06 34.2 -1.5 17 2-18 6-22 (186)
299 1v43_A Sugar-binding transport 82.0 0.14 4.7E-06 38.4 -1.6 25 2-26 42-66 (372)
300 3kb2_A SPBC2 prophage-derived 81.8 0.12 4E-06 33.7 -1.9 19 2-20 6-24 (173)
301 3pg5_A Uncharacterized protein 81.5 8.4 0.00029 28.4 7.9 120 36-158 153-350 (361)
302 2xxa_A Signal recognition part 81.4 5.1 0.00018 30.6 6.8 66 35-108 182-254 (433)
303 3rlf_A Maltose/maltodextrin im 81.4 0.15 5E-06 38.4 -1.6 25 2-26 34-58 (381)
304 3la6_A Tyrosine-protein kinase 81.4 7.5 0.00025 27.8 7.4 68 36-108 201-268 (286)
305 2pt7_A CAG-ALFA; ATPase, prote 81.3 0.13 4.4E-06 37.9 -2.0 25 2-26 176-200 (330)
306 1kag_A SKI, shikimate kinase I 81.2 0.15 5E-06 33.3 -1.6 19 2-20 9-27 (173)
307 1htw_A HI0065; nucleotide-bind 81.2 0.17 6E-06 33.0 -1.2 24 2-26 38-61 (158)
308 1ly1_A Polynucleotide kinase; 81.1 0.13 4.4E-06 33.7 -1.9 18 2-19 7-24 (181)
309 3co5_A Putative two-component 80.7 0.69 2.4E-05 29.3 1.6 19 2-20 32-50 (143)
310 3ec2_A DNA replication protein 80.7 0.19 6.5E-06 33.1 -1.2 20 2-21 43-62 (180)
311 3lw7_A Adenylate kinase relate 80.7 0.13 4.6E-06 33.3 -1.9 16 2-17 6-21 (179)
312 3lnc_A Guanylate kinase, GMP k 80.6 0.21 7.1E-06 34.4 -1.0 20 2-21 32-52 (231)
313 2bdt_A BH3686; alpha-beta prot 80.5 0.19 6.6E-06 33.3 -1.2 17 2-18 7-23 (189)
314 2ehv_A Hypothetical protein PH 80.3 0.17 5.9E-06 35.0 -1.5 17 2-18 35-51 (251)
315 1z6g_A Guanylate kinase; struc 80.2 0.2 6.9E-06 34.4 -1.2 18 2-19 28-45 (218)
316 2ghi_A Transport protein; mult 79.7 0.22 7.5E-06 35.3 -1.2 18 2-19 51-68 (260)
317 1zcb_A G alpha I/13; GTP-bindi 79.5 0.17 5.7E-06 37.8 -1.9 16 2-17 38-53 (362)
318 1s96_A Guanylate kinase, GMP k 79.5 0.22 7.4E-06 34.4 -1.2 17 2-18 21-37 (219)
319 3d31_A Sulfate/molybdate ABC t 79.4 0.11 3.9E-06 38.5 -2.8 25 2-26 31-55 (348)
320 2afh_E Nitrogenase iron protei 79.3 6.1 0.00021 27.9 6.4 70 36-106 118-189 (289)
321 1knq_A Gluconate kinase; ALFA/ 79.2 0.19 6.4E-06 32.9 -1.5 16 2-17 13-28 (175)
322 4eun_A Thermoresistant glucoki 79.1 0.19 6.6E-06 33.8 -1.6 18 2-19 34-51 (200)
323 2oze_A ORF delta'; para, walke 79.1 3.2 0.00011 29.5 4.8 69 36-108 154-226 (298)
324 2yl4_A ATP-binding cassette SU 79.1 0.28 9.5E-06 39.1 -0.9 25 2-26 375-399 (595)
325 4a82_A Cystic fibrosis transme 78.9 0.25 8.6E-06 39.2 -1.1 25 2-26 372-396 (578)
326 2eyu_A Twitching motility prot 78.9 0.24 8.3E-06 35.1 -1.1 22 2-23 30-51 (261)
327 3qf4_B Uncharacterized ABC tra 78.7 0.28 9.7E-06 39.0 -0.9 25 2-26 386-410 (598)
328 2qor_A Guanylate kinase; phosp 78.6 0.17 5.9E-06 34.1 -1.9 18 2-19 17-34 (204)
329 3ohm_A Guanine nucleotide-bind 78.5 0.22 7.4E-06 36.7 -1.5 16 2-17 12-27 (327)
330 2jaq_A Deoxyguanosine kinase; 78.4 0.18 6.1E-06 33.7 -1.9 18 2-19 5-22 (205)
331 3t61_A Gluconokinase; PSI-biol 78.2 0.21 7.3E-06 33.5 -1.5 18 2-19 23-40 (202)
332 2gza_A Type IV secretion syste 78.1 0.24 8.1E-06 36.9 -1.4 25 2-26 180-204 (361)
333 2vp4_A Deoxynucleoside kinase; 78.0 0.25 8.5E-06 34.1 -1.3 19 2-20 25-43 (230)
334 2i3b_A HCR-ntpase, human cance 77.8 0.25 8.7E-06 33.2 -1.2 16 2-17 6-21 (189)
335 1cip_A Protein (guanine nucleo 77.8 0.23 8E-06 36.9 -1.5 16 2-17 37-52 (353)
336 4a74_A DNA repair and recombin 77.8 0.27 9.1E-06 33.5 -1.2 17 2-18 30-46 (231)
337 1lw7_A Transcriptional regulat 77.7 0.13 4.6E-06 38.2 -2.9 24 2-25 175-198 (365)
338 1rz3_A Hypothetical protein rb 77.7 0.23 7.7E-06 33.5 -1.5 18 2-19 27-44 (201)
339 1nks_A Adenylate kinase; therm 77.6 0.19 6.5E-06 33.2 -1.9 18 2-19 6-23 (194)
340 2xtz_A Guanine nucleotide-bind 77.1 0.22 7.4E-06 37.1 -1.9 16 2-17 14-29 (354)
341 1jbk_A CLPB protein; beta barr 77.0 0.2 6.9E-06 32.7 -1.9 17 2-18 48-64 (195)
342 3aez_A Pantothenate kinase; tr 77.0 0.29 1E-05 35.7 -1.2 22 2-23 95-116 (312)
343 4fid_A G protein alpha subunit 76.9 0.26 8.7E-06 36.5 -1.5 15 2-16 10-24 (340)
344 2obl_A ESCN; ATPase, hydrolase 76.8 0.24 8E-06 36.8 -1.8 25 2-26 76-100 (347)
345 2w0m_A SSO2452; RECA, SSPF, un 76.8 0.22 7.4E-06 34.0 -1.9 16 2-17 28-43 (235)
346 2oap_1 GSPE-2, type II secreti 76.6 0.35 1.2E-05 37.9 -0.9 25 2-26 265-289 (511)
347 3b60_A Lipid A export ATP-bind 76.6 0.26 8.8E-06 39.1 -1.7 25 2-26 374-398 (582)
348 2z0h_A DTMP kinase, thymidylat 76.5 0.22 7.4E-06 33.1 -1.9 19 2-20 5-23 (197)
349 3cm0_A Adenylate kinase; ATP-b 76.5 0.21 7.3E-06 32.9 -1.9 17 2-18 9-25 (186)
350 3fb4_A Adenylate kinase; psych 76.4 0.22 7.6E-06 33.8 -1.9 18 2-19 5-22 (216)
351 1oxx_K GLCV, glucose, ABC tran 76.4 0.12 4E-06 38.5 -3.5 25 2-26 36-60 (353)
352 1jjv_A Dephospho-COA kinase; P 76.3 0.26 8.9E-06 33.2 -1.5 18 2-19 7-24 (206)
353 3kta_A Chromosome segregation 75.8 0.27 9.2E-06 32.4 -1.6 16 2-17 31-46 (182)
354 2plr_A DTMP kinase, probable t 75.6 0.24 8.2E-06 33.3 -1.9 19 2-20 9-27 (213)
355 3b5x_A Lipid A export ATP-bind 75.6 0.28 9.6E-06 38.9 -1.7 25 2-26 374-398 (582)
356 2v54_A DTMP kinase, thymidylat 75.5 0.24 8.3E-06 33.2 -1.9 20 2-21 9-28 (204)
357 3ney_A 55 kDa erythrocyte memb 75.5 0.24 8.2E-06 33.7 -1.9 17 2-18 24-40 (197)
358 2rhm_A Putative kinase; P-loop 75.2 0.25 8.4E-06 32.8 -1.9 18 2-19 10-27 (193)
359 2cvh_A DNA repair and recombin 75.1 0.3 1E-05 33.0 -1.5 18 2-19 25-42 (220)
360 1tev_A UMP-CMP kinase; ploop, 75.0 0.25 8.6E-06 32.7 -1.9 18 2-19 8-25 (196)
361 3tau_A Guanylate kinase, GMP k 74.9 0.3 1E-05 33.2 -1.6 20 2-21 13-32 (208)
362 1cke_A CK, MSSA, protein (cyti 74.9 0.3 1E-05 33.3 -1.5 16 2-17 10-25 (227)
363 3qf4_A ABC transporter, ATP-bi 74.8 0.37 1.3E-05 38.3 -1.2 25 2-26 374-398 (587)
364 2if2_A Dephospho-COA kinase; a 74.7 0.3 1E-05 32.7 -1.5 18 2-19 6-23 (204)
365 2jeo_A Uridine-cytidine kinase 74.6 0.37 1.3E-05 33.6 -1.2 18 2-19 30-47 (245)
366 1sq5_A Pantothenate kinase; P- 74.4 0.38 1.3E-05 34.9 -1.2 21 2-22 85-105 (308)
367 2pbr_A DTMP kinase, thymidylat 74.4 0.31 1.1E-05 32.2 -1.5 18 2-19 5-22 (195)
368 1azs_C GS-alpha; complex (lyas 74.3 0.33 1.1E-05 36.8 -1.5 16 2-17 45-60 (402)
369 3dl0_A Adenylate kinase; phosp 74.2 0.27 9.3E-06 33.3 -1.9 18 2-19 5-22 (216)
370 2qt1_A Nicotinamide riboside k 73.9 0.33 1.1E-05 32.7 -1.5 19 2-20 26-44 (207)
371 2f1r_A Molybdopterin-guanine d 73.9 0.073 2.5E-06 35.3 -4.7 23 2-24 7-29 (171)
372 1zd8_A GTP:AMP phosphotransfer 73.8 0.28 9.7E-06 33.6 -1.9 23 131-156 193-215 (227)
373 1kht_A Adenylate kinase; phosp 73.8 0.28 9.5E-06 32.4 -1.9 18 2-19 8-25 (192)
374 3cio_A ETK, tyrosine-protein k 73.7 11 0.00036 27.1 6.3 66 36-107 213-279 (299)
375 3ozx_A RNAse L inhibitor; ATP 73.3 0.27 9.3E-06 38.7 -2.3 25 2-26 30-54 (538)
376 1rj9_A FTSY, signal recognitio 73.3 0.36 1.2E-05 35.1 -1.5 64 37-107 185-260 (304)
377 3vaa_A Shikimate kinase, SK; s 73.3 0.29 1E-05 32.9 -1.9 16 2-17 30-45 (199)
378 2v9p_A Replication protein E1; 73.2 0.42 1.4E-05 34.8 -1.2 17 2-18 131-147 (305)
379 1xjc_A MOBB protein homolog; s 73.2 0.29 9.8E-06 32.4 -1.9 17 3-19 10-26 (169)
380 3tqc_A Pantothenate kinase; bi 72.8 0.38 1.3E-05 35.3 -1.5 17 2-18 97-113 (321)
381 1qhx_A CPT, protein (chloramph 72.4 0.31 1.1E-05 31.8 -1.9 18 2-19 8-25 (178)
382 2yvu_A Probable adenylyl-sulfa 72.3 0.32 1.1E-05 32.2 -1.9 18 2-19 18-35 (186)
383 2wwf_A Thymidilate kinase, put 72.3 0.38 1.3E-05 32.4 -1.5 18 2-19 15-32 (212)
384 2vli_A Antibiotic resistance p 72.2 0.34 1.2E-05 31.8 -1.7 18 2-19 10-27 (183)
385 1e4v_A Adenylate kinase; trans 72.1 0.33 1.1E-05 33.0 -1.9 18 2-19 5-22 (214)
386 1nn5_A Similar to deoxythymidy 71.9 0.33 1.1E-05 32.7 -1.9 18 2-19 14-31 (215)
387 1aky_A Adenylate kinase; ATP:A 71.6 0.34 1.2E-05 33.0 -1.9 18 2-19 9-26 (220)
388 1yqt_A RNAse L inhibitor; ATP- 71.4 0.3 1E-05 38.4 -2.4 18 2-19 52-69 (538)
389 1gtv_A TMK, thymidylate kinase 71.1 0.16 5.6E-06 34.3 -3.6 17 2-18 5-21 (214)
390 2dpy_A FLII, flagellum-specifi 71.0 0.37 1.3E-05 36.9 -2.0 25 2-26 162-186 (438)
391 1cr0_A DNA primase/helicase; R 70.9 0.44 1.5E-05 34.1 -1.5 17 2-18 40-56 (296)
392 3iij_A Coilin-interacting nucl 70.9 0.36 1.2E-05 31.7 -1.9 17 2-18 16-32 (180)
393 1n0w_A DNA repair protein RAD5 70.8 0.44 1.5E-05 32.7 -1.5 18 2-19 29-46 (243)
394 3bk7_A ABC transporter ATP-bin 70.8 0.34 1.2E-05 38.7 -2.3 23 2-24 122-144 (607)
395 2p5t_B PEZT; postsegregational 70.7 0.32 1.1E-05 34.1 -2.3 16 2-17 37-52 (253)
396 1in4_A RUVB, holliday junction 70.7 0.53 1.8E-05 34.5 -1.2 18 2-19 56-73 (334)
397 1nij_A Hypothetical protein YJ 70.6 0.41 1.4E-05 34.9 -1.8 17 2-18 9-25 (318)
398 3bos_A Putative DNA replicatio 70.5 0.38 1.3E-05 32.8 -1.9 17 2-18 57-73 (242)
399 2xb4_A Adenylate kinase; ATP-b 70.5 0.37 1.3E-05 33.0 -1.9 18 2-19 5-22 (223)
400 1ixz_A ATP-dependent metallopr 70.3 0.53 1.8E-05 32.8 -1.2 17 2-18 54-70 (254)
401 1gvn_B Zeta; postsegregational 70.3 0.47 1.6E-05 34.0 -1.5 17 2-18 38-54 (287)
402 3jvv_A Twitching mobility prot 70.3 3.1 0.00011 30.9 2.9 18 2-19 128-145 (356)
403 3sr0_A Adenylate kinase; phosp 70.2 0.25 8.6E-06 33.7 -2.8 20 2-21 5-24 (206)
404 2c95_A Adenylate kinase 1; tra 70.1 0.38 1.3E-05 31.9 -1.9 17 2-18 14-30 (196)
405 1qf9_A UMP/CMP kinase, protein 70.1 0.45 1.5E-05 31.3 -1.5 18 2-19 11-28 (194)
406 3j16_B RLI1P; ribosome recycli 69.9 0.35 1.2E-05 38.7 -2.4 25 2-26 108-132 (608)
407 2xj4_A MIPZ; replication, cell 69.8 1.2 4.3E-05 31.6 0.7 34 36-71 103-136 (286)
408 2bwj_A Adenylate kinase 5; pho 69.8 0.39 1.3E-05 31.9 -1.9 18 2-19 17-34 (199)
409 3b9q_A Chloroplast SRP recepto 69.7 0.48 1.6E-05 34.4 -1.6 16 2-17 105-120 (302)
410 2ewv_A Twitching motility prot 69.7 0.57 1.9E-05 35.0 -1.2 22 2-23 141-162 (372)
411 2pez_A Bifunctional 3'-phospho 69.7 0.46 1.6E-05 31.2 -1.5 19 2-20 10-28 (179)
412 2ffh_A Protein (FFH); SRP54, s 69.7 13 0.00043 28.4 6.2 66 35-107 179-250 (425)
413 2cdn_A Adenylate kinase; phosp 69.5 0.4 1.4E-05 32.1 -1.9 18 2-19 25-42 (201)
414 1f2t_A RAD50 ABC-ATPase; DNA d 69.5 0.62 2.1E-05 29.9 -0.9 16 2-17 28-43 (149)
415 1y63_A LMAJ004144AAA protein; 69.5 0.47 1.6E-05 31.4 -1.5 19 2-20 15-33 (184)
416 3tlx_A Adenylate kinase 2; str 69.4 0.41 1.4E-05 33.4 -1.9 18 2-19 34-51 (243)
417 2p65_A Hypothetical protein PF 69.4 0.28 9.5E-06 32.0 -2.7 17 2-18 48-64 (187)
418 1p9r_A General secretion pathw 69.2 0.59 2E-05 35.6 -1.2 17 2-18 172-188 (418)
419 3trf_A Shikimate kinase, SK; a 69.0 0.42 1.4E-05 31.5 -1.9 17 2-18 10-26 (185)
420 1ukz_A Uridylate kinase; trans 69.0 0.42 1.4E-05 32.0 -1.9 17 2-18 20-36 (203)
421 2j9r_A Thymidine kinase; TK1, 69.0 3.1 0.00011 28.6 2.5 14 94-107 128-141 (214)
422 3u61_B DNA polymerase accessor 68.9 2.1 7.2E-05 30.8 1.8 19 2-20 52-71 (324)
423 3gd7_A Fusion complex of cysti 68.8 0.61 2.1E-05 35.2 -1.2 16 2-17 52-67 (390)
424 1e6c_A Shikimate kinase; phosp 68.7 0.42 1.4E-05 31.0 -1.9 17 2-18 7-23 (173)
425 2pt5_A Shikimate kinase, SK; a 68.7 0.41 1.4E-05 30.9 -1.9 18 2-19 5-22 (168)
426 1ex7_A Guanylate kinase; subst 68.6 0.42 1.4E-05 32.1 -1.9 16 2-17 6-21 (186)
427 2w58_A DNAI, primosome compone 68.5 0.44 1.5E-05 31.9 -1.9 16 2-17 59-74 (202)
428 1njg_A DNA polymerase III subu 68.4 0.45 1.5E-05 32.3 -1.9 16 2-17 50-65 (250)
429 1odf_A YGR205W, hypothetical 3 68.3 0.54 1.8E-05 33.9 -1.5 17 2-18 36-52 (290)
430 3uie_A Adenylyl-sulfate kinase 68.3 0.61 2.1E-05 31.3 -1.2 19 2-20 30-48 (200)
431 3a4m_A L-seryl-tRNA(SEC) kinas 68.2 0.46 1.6E-05 33.5 -1.9 18 2-19 9-26 (260)
432 3qf7_A RAD50; ABC-ATPase, ATPa 68.2 0.64 2.2E-05 34.6 -1.2 15 2-16 28-42 (365)
433 4e22_A Cytidylate kinase; P-lo 68.1 0.46 1.6E-05 33.3 -1.9 17 2-18 32-48 (252)
434 2x8a_A Nuclear valosin-contain 68.0 0.63 2.2E-05 33.1 -1.2 19 2-20 49-67 (274)
435 2grj_A Dephospho-COA kinase; T 67.9 0.55 1.9E-05 31.6 -1.5 19 2-20 17-35 (192)
436 2npi_A Protein CLP1; CLP1-PCF1 67.7 0.58 2E-05 36.1 -1.6 16 2-17 143-158 (460)
437 3ozx_A RNAse L inhibitor; ATP 67.5 0.53 1.8E-05 37.1 -1.8 25 2-26 299-323 (538)
438 2chg_A Replication factor C sm 67.4 0.48 1.6E-05 31.7 -1.9 17 2-18 43-59 (226)
439 1nlf_A Regulatory protein REPA 67.4 0.57 2E-05 33.2 -1.5 16 2-17 35-50 (279)
440 1zak_A Adenylate kinase; ATP:A 67.4 0.48 1.6E-05 32.3 -1.9 24 131-156 188-211 (222)
441 2dr3_A UPF0273 protein PH0284; 67.1 0.49 1.7E-05 32.5 -1.9 16 2-17 28-43 (247)
442 1ak2_A Adenylate kinase isoenz 66.9 0.5 1.7E-05 32.6 -1.9 18 2-19 21-38 (233)
443 3be4_A Adenylate kinase; malar 66.9 0.49 1.7E-05 32.2 -1.9 18 2-19 10-27 (217)
444 1p5z_B DCK, deoxycytidine kina 66.5 0.61 2.1E-05 32.8 -1.5 20 2-21 29-48 (263)
445 1m7g_A Adenylylsulfate kinase; 66.1 0.52 1.8E-05 31.9 -1.9 25 2-26 30-54 (211)
446 3bk7_A ABC transporter ATP-bin 65.9 0.55 1.9E-05 37.6 -2.0 25 2-26 387-411 (607)
447 3euj_A Chromosome partition pr 65.9 0.36 1.2E-05 37.5 -3.0 16 2-17 34-49 (483)
448 4eaq_A DTMP kinase, thymidylat 65.8 0.53 1.8E-05 32.6 -1.9 21 2-22 31-51 (229)
449 1yqt_A RNAse L inhibitor; ATP- 65.7 0.57 1.9E-05 36.9 -2.0 25 2-26 317-341 (538)
450 2ze6_A Isopentenyl transferase 65.6 0.55 1.9E-05 33.0 -1.9 16 2-17 6-21 (253)
451 3umf_A Adenylate kinase; rossm 65.6 0.36 1.2E-05 33.3 -2.8 19 2-20 34-52 (217)
452 2yhs_A FTSY, cell division pro 65.6 0.67 2.3E-05 36.1 -1.5 63 36-106 375-450 (503)
453 1iy2_A ATP-dependent metallopr 65.4 0.77 2.6E-05 32.5 -1.2 17 2-18 78-94 (278)
454 1vht_A Dephospho-COA kinase; s 65.2 0.65 2.2E-05 31.5 -1.6 18 2-19 9-26 (218)
455 3e2i_A Thymidine kinase; Zn-bi 64.9 8.2 0.00028 26.6 3.9 25 79-107 117-141 (219)
456 2iyv_A Shikimate kinase, SK; t 64.6 0.9 3.1E-05 29.8 -0.9 17 2-18 7-23 (184)
457 2og2_A Putative signal recogni 64.1 0.73 2.5E-05 34.3 -1.6 16 2-17 162-177 (359)
458 1pzn_A RAD51, DNA repair and r 64.1 0.74 2.5E-05 34.1 -1.5 17 2-18 136-152 (349)
459 1c9k_A COBU, adenosylcobinamid 63.8 0.59 2E-05 31.3 -1.9 18 2-19 4-21 (180)
460 1via_A Shikimate kinase; struc 63.2 0.97 3.3E-05 29.4 -1.0 17 2-18 9-25 (175)
461 1zuh_A Shikimate kinase; alpha 63.2 0.74 2.5E-05 29.8 -1.5 17 2-18 12-28 (168)
462 2fna_A Conserved hypothetical 63.0 0.68 2.3E-05 33.6 -1.9 17 2-18 35-51 (357)
463 2r62_A Cell division protease 62.9 0.97 3.3E-05 31.7 -1.1 17 2-18 49-65 (268)
464 3qks_A DNA double-strand break 62.4 0.9 3.1E-05 30.7 -1.3 16 2-17 28-43 (203)
465 1uf9_A TT1252 protein; P-loop, 62.3 0.78 2.7E-05 30.5 -1.6 18 2-19 13-30 (203)
466 2qen_A Walker-type ATPase; unk 62.2 0.72 2.5E-05 33.4 -1.9 18 2-19 36-53 (350)
467 3ez9_A Para; DNA binding, wing 61.9 18 0.00062 26.9 5.8 34 36-71 247-280 (403)
468 1e69_A Chromosome segregation 61.9 1.5 5E-05 31.9 -0.3 16 2-17 29-44 (322)
469 1ltq_A Polynucleotide kinase; 61.4 0.75 2.6E-05 32.9 -1.9 18 2-19 7-24 (301)
470 1tf7_A KAIC; homohexamer, hexa 61.4 0.91 3.1E-05 35.5 -1.5 16 2-17 44-59 (525)
471 2qby_A CDC6 homolog 1, cell di 61.3 0.77 2.6E-05 33.7 -1.9 18 2-19 50-67 (386)
472 3j16_B RLI1P; ribosome recycli 60.9 0.79 2.7E-05 36.7 -2.0 25 2-26 383-407 (608)
473 1l8q_A Chromosomal replication 60.8 0.78 2.7E-05 33.2 -1.9 17 2-18 42-58 (324)
474 3pfi_A Holliday junction ATP-d 60.7 9.6 0.00033 27.5 4.0 17 2-18 60-76 (338)
475 2iw3_A Elongation factor 3A; a 60.6 0.64 2.2E-05 39.3 -2.6 25 2-26 704-728 (986)
476 4f4c_A Multidrug resistance pr 60.1 1 3.5E-05 39.4 -1.5 25 2-26 449-473 (1321)
477 2ocp_A DGK, deoxyguanosine kin 59.6 0.82 2.8E-05 31.6 -1.9 18 2-19 7-24 (241)
478 1qhl_A Protein (cell division 59.4 0.58 2E-05 32.5 -2.7 23 2-24 32-54 (227)
479 3g5u_A MCG1178, multidrug resi 58.9 1.2 4.1E-05 38.9 -1.4 25 2-26 421-445 (1284)
480 1fnn_A CDC6P, cell division co 58.8 0.91 3.1E-05 33.5 -1.9 18 2-19 49-66 (389)
481 3h4m_A Proteasome-activating n 58.3 0.9 3.1E-05 32.1 -1.9 18 2-19 56-73 (285)
482 1lv7_A FTSH; alpha/beta domain 58.2 1.2 4.2E-05 31.0 -1.2 18 2-19 50-67 (257)
483 1svm_A Large T antigen; AAA+ f 58.0 1.3 4.4E-05 33.3 -1.2 17 2-18 174-190 (377)
484 2px0_A Flagellar biosynthesis 57.9 1.2 4.2E-05 32.1 -1.3 66 35-107 181-252 (296)
485 3n70_A Transport activator; si 57.9 1 3.5E-05 28.5 -1.5 17 2-18 29-45 (145)
486 2v1u_A Cell division control p 57.8 1 3.5E-05 33.1 -1.8 17 2-18 49-65 (387)
487 1sxj_E Activator 1 40 kDa subu 57.6 1.2 4.1E-05 32.5 -1.4 18 2-19 41-58 (354)
488 4hlc_A DTMP kinase, thymidylat 57.5 1.1 3.8E-05 30.4 -1.5 24 131-156 178-201 (205)
489 3nwj_A ATSK2; P loop, shikimat 56.8 1.1 3.9E-05 31.4 -1.5 22 136-157 217-238 (250)
490 1uj2_A Uridine-cytidine kinase 56.8 1.2 4E-05 31.1 -1.5 18 2-19 27-44 (252)
491 3lda_A DNA repair protein RAD5 56.5 1.2 4.1E-05 33.7 -1.5 16 2-17 183-198 (400)
492 3b9p_A CG5977-PA, isoform A; A 56.5 1 3.4E-05 32.1 -1.9 18 2-19 59-76 (297)
493 4f4c_A Multidrug resistance pr 56.2 1.4 4.9E-05 38.5 -1.3 25 2-26 1110-1134(1321)
494 2qz4_A Paraplegin; AAA+, SPG7, 55.8 1 3.6E-05 31.2 -1.9 18 2-19 44-61 (262)
495 3auy_A DNA double-strand break 55.8 1.4 4.8E-05 32.7 -1.3 15 2-16 30-44 (371)
496 3qkt_A DNA double-strand break 55.2 1.7 5.8E-05 31.8 -0.9 15 2-16 28-42 (339)
497 3ake_A Cytidylate kinase; CMP 54.6 1.3 4.5E-05 29.5 -1.5 17 2-18 7-23 (208)
498 3syl_A Protein CBBX; photosynt 54.3 1.2 4E-05 31.9 -1.9 16 2-17 72-87 (309)
499 2f6r_A COA synthase, bifunctio 54.3 1.3 4.6E-05 31.5 -1.6 17 2-18 80-96 (281)
500 2orw_A Thymidine kinase; TMTK, 54.1 1.5 5.1E-05 29.2 -1.3 39 62-106 76-115 (184)
No 1
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=100.00 E-value=5.1e-34 Score=195.47 Aligned_cols=155 Identities=36% Similarity=0.667 Sum_probs=133.1
Q ss_pred ccccCCCCCceeeeece----eeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH
Q 030931 2 LRVKQPYCTSCTLVKFY----LLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG 77 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~----~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~ 77 (169)
+++.+|+|||||++++. ..+.||.|+....+..+++.+++|||||++.+...+..+++.+|++++|||+++++++.
T Consensus 21 ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~ 100 (181)
T 1fzq_A 21 LLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFE 100 (181)
T ss_dssp EEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHH
T ss_pred EECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHH
Confidence 56789999999999873 34688999888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhh
Q 030931 78 KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM 156 (169)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (169)
.+..|+..+++.....+.|+++|+||+|+.+....+++.+.++.......++++++|||++|+|++++|+++.+.+.++
T Consensus 101 ~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 179 (181)
T 1fzq_A 101 ETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 179 (181)
T ss_dssp HHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHHHHHhc
Confidence 9999999887654456899999999999987766677777666554456678899999999999999999999877554
No 2
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=8.4e-36 Score=209.60 Aligned_cols=150 Identities=15% Similarity=0.237 Sum_probs=112.8
Q ss_pred CccccCCCCCceeeeec-----eeeeeeeeeEEEEE--EEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931 1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK--VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL 71 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~ 71 (169)
+|++.+|+|||||++|| .+.+.||++.++.. +.. ..++++||||+|+++|..+++.++++++++++|||++
T Consensus 17 vlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~ 96 (216)
T 4dkx_A 17 VFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDIT 96 (216)
T ss_dssp EEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETT
T ss_pred EEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecc
Confidence 36789999999999976 67788999976543 333 5689999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHH
Q 030931 72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149 (169)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 149 (169)
++++|+.+..|+..+.... .+++|+++||||+|+.+. ++.++... + +...+++|++|||++|.||+++|++|
T Consensus 97 ~~~Sf~~i~~~~~~i~~~~-~~~~piilVgNK~Dl~~~r~V~~~e~~~-~----a~~~~~~~~e~SAktg~nV~e~F~~i 170 (216)
T 4dkx_A 97 NVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLADKRQVSIEEGER-K----AKELNVMFIETSAKAGYNVKQLFRRV 170 (216)
T ss_dssp CHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCGGGCCSCHHHHHH-H----HHHHTCEEEEEBTTTTBSHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhc-CCCCeEEEEeeccchHhcCcccHHHHhh-H----HHHhCCeeEEEeCCCCcCHHHHHHHH
Confidence 9999999999999886532 257999999999999653 33333221 1 12345679999999999999999999
Q ss_pred HHHHHhh
Q 030931 150 ASTLKEM 156 (169)
Q Consensus 150 ~~~~~~~ 156 (169)
++.+...
T Consensus 171 ~~~i~~~ 177 (216)
T 4dkx_A 171 AAALPGM 177 (216)
T ss_dssp HHHC---
T ss_pred HHHHHhh
Confidence 9887654
No 3
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=100.00 E-value=4.9e-34 Score=192.02 Aligned_cols=155 Identities=50% Similarity=0.916 Sum_probs=133.8
Q ss_pred ccccCCCCCceeeeec----eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH
Q 030931 2 LRVKQPYCTSCTLVKF----YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG 77 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f----~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~ 77 (169)
+++.+|+|||||++++ ...+.||+++....+..+++.+++|||||++.+..++..+++++|++++|||+++++++.
T Consensus 5 ~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~ 84 (164)
T 1r8s_A 5 MVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVN 84 (164)
T ss_dssp EECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHH
T ss_pred EECCCCCCHHHHHHHHHcCCcCcccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHH
Confidence 5778999999999987 234678999888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhh
Q 030931 78 KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM 156 (169)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (169)
....|+..++......+.|+++|+||+|+.+....+++...++.......+++++++||++|.|++++|+++.+.+.++
T Consensus 85 ~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 163 (164)
T 1r8s_A 85 EAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 163 (164)
T ss_dssp HHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHHhhc
Confidence 9999999987755556899999999999987766677777776655566678899999999999999999999877543
No 4
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=100.00 E-value=3e-33 Score=189.22 Aligned_cols=155 Identities=45% Similarity=0.771 Sum_probs=136.2
Q ss_pred ccccCCCCCceeeeec----eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH
Q 030931 2 LRVKQPYCTSCTLVKF----YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG 77 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f----~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~ 77 (169)
+++.+|+|||||++++ ...+.||.+.....+.++...+.+|||||++.+...+..+++.+|++++|+|++++.++.
T Consensus 12 v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~ 91 (171)
T 1upt_A 12 ILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIG 91 (171)
T ss_dssp EECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHH
T ss_pred EECCCCCCHHHHHHHHhcCCCCCcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHH
Confidence 5678999999999987 235678889888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhh
Q 030931 78 KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM 156 (169)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (169)
....|+..++......+.|+++|+||+|+.+....+++...++.......+++++++||++|.|++++|+++.+.+.++
T Consensus 92 ~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 170 (171)
T 1upt_A 92 ISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 170 (171)
T ss_dssp HHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHHHHhhc
Confidence 9999999887764446899999999999987766777777776555566778999999999999999999999988654
No 5
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=100.00 E-value=3.1e-33 Score=193.31 Aligned_cols=154 Identities=49% Similarity=0.888 Sum_probs=130.3
Q ss_pred ccccCCCCCceeeeece----eeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH
Q 030931 2 LRVKQPYCTSCTLVKFY----LLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG 77 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~----~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~ 77 (169)
+++.+++|||||++++. ..+.||+++....++.+++.+.+|||||++++..++..+++.+|++++|||++++++++
T Consensus 34 v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~ 113 (192)
T 2b6h_A 34 MVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQ 113 (192)
T ss_dssp EEESTTSSHHHHHHHHCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHH
T ss_pred EECCCCCCHHHHHHHHHhCCccccCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHH
Confidence 56789999999999872 35678889888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHh
Q 030931 78 KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE 155 (169)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 155 (169)
....|+..++......+.|+++|+||+|+.+....+++.+.++.......+++++++||++|.|++++|+++.+.+.+
T Consensus 114 ~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 191 (192)
T 2b6h_A 114 ESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSK 191 (192)
T ss_dssp HHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHHHHHhc
Confidence 999999998875555689999999999998776777788777765556677889999999999999999999987643
No 6
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.9e-33 Score=193.32 Aligned_cols=159 Identities=38% Similarity=0.625 Sum_probs=130.5
Q ss_pred ccccCCCCCceeeeece----eeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH
Q 030931 2 LRVKQPYCTSCTLVKFY----LLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG 77 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~----~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~ 77 (169)
+++.+++|||||++++. ..+.||+++....+..+++.+++|||||++++..++..+++.+|++++|||++++++++
T Consensus 21 v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~ 100 (187)
T 1zj6_A 21 IVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERIS 100 (187)
T ss_dssp EEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHH
T ss_pred EECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHH
Confidence 56789999999999872 36778888888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhhh
Q 030931 78 KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR 157 (169)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 157 (169)
....|+..+++.....+.|+++|+||+|+.+....+++.+.+........+++++++||++|.|++++|+++.+.+....
T Consensus 101 ~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 180 (187)
T 1zj6_A 101 VTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIRL 180 (187)
T ss_dssp HHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHHHHh
Confidence 99999999987543468999999999999876667777776665434556789999999999999999999999887665
Q ss_pred ccc
Q 030931 158 AAG 160 (169)
Q Consensus 158 ~~~ 160 (169)
...
T Consensus 181 ~~~ 183 (187)
T 1zj6_A 181 EHH 183 (187)
T ss_dssp ---
T ss_pred hhh
Confidence 443
No 7
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=100.00 E-value=8.7e-34 Score=196.44 Aligned_cols=158 Identities=34% Similarity=0.504 Sum_probs=135.3
Q ss_pred ccccCCCCCceeeeec-----ee-eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhh
Q 030931 2 LRVKQPYCTSCTLVKF-----YL-LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRER 75 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~-~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~ 75 (169)
|++.+++|||||+++| .. .+.||+++....++...+.+++|||||++++..++..+++.+|++|+|||+++.++
T Consensus 22 v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s 101 (199)
T 4bas_A 22 MCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLR 101 (199)
T ss_dssp EECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGG
T ss_pred EECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHH
Confidence 6779999999999986 34 67899999888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCC-------CCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCC-CCceeEEEEeeeccCCCHHHHHH
Q 030931 76 IGKAKQEFQAIIKDPFM-------LNSVILVFANKQDMKGAMTPMEVCEGLGLFDL-KNRKWHIQGTCALKGDGLYEGLD 147 (169)
Q Consensus 76 ~~~~~~~~~~~~~~~~~-------~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~~~~ 147 (169)
|..+..|+..+++.... .+.|+++|+||+|+.+....+++.+.++.... ...++++++|||++|.|++++|+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~ 181 (199)
T 4bas_A 102 LCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFS 181 (199)
T ss_dssp HHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHH
T ss_pred HHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHH
Confidence 99999999988764221 27899999999999887777777777764433 45678899999999999999999
Q ss_pred HHHHHHHhhhcc
Q 030931 148 WLASTLKEMRAA 159 (169)
Q Consensus 148 ~l~~~~~~~~~~ 159 (169)
++.+.+.+....
T Consensus 182 ~l~~~~~~~~~~ 193 (199)
T 4bas_A 182 WLQETASRQSGK 193 (199)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHHhcc
Confidence 999998877543
No 8
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=100.00 E-value=8.9e-33 Score=189.67 Aligned_cols=155 Identities=35% Similarity=0.677 Sum_probs=135.8
Q ss_pred ccccCCCCCceeeeec----eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH
Q 030931 2 LRVKQPYCTSCTLVKF----YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG 77 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f----~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~ 77 (169)
+++.+++|||||++++ ...+.||.+.....+..+++.+++|||||++++...+..+++.+|++++|+|++++.+++
T Consensus 23 v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~ 102 (186)
T 1ksh_A 23 MLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQ 102 (186)
T ss_dssp EECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHH
T ss_pred EECCCCCCHHHHHHHHhcCCCCcccccCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHH
Confidence 5678999999999987 356778999888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhh
Q 030931 78 KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM 156 (169)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (169)
.+..|+..+++.....+.|+++|+||+|+.+....+++.+.+........+++++++||++|.|++++|+++.+.+.+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 103 DCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp HHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence 9999999987764456899999999999987767777777666544456678999999999999999999999988765
No 9
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=100.00 E-value=4.6e-33 Score=191.71 Aligned_cols=155 Identities=26% Similarity=0.477 Sum_probs=134.0
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhH
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERI 76 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~ 76 (169)
|++.+++|||||+++| ...+.||++.++..+..+.+.+.+|||||++++..++..+++.+|++++|||+++++++
T Consensus 27 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~ 106 (188)
T 1zd9_A 27 LVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKI 106 (188)
T ss_dssp EECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGH
T ss_pred EECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHH
Confidence 5678999999999976 45678999999888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhh
Q 030931 77 GKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM 156 (169)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (169)
..+..|+..+++.....+.|+++|+||+|+.+....+++.+.++.......+++++++||++|.|++++|+++.+.+.+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 186 (188)
T 1zd9_A 107 EASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSR 186 (188)
T ss_dssp HHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 99999999987754446899999999999987666677777666554555678899999999999999999999876543
No 10
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=100.00 E-value=9.3e-33 Score=190.10 Aligned_cols=156 Identities=42% Similarity=0.751 Sum_probs=136.4
Q ss_pred ccccCCCCCceeeeece----eeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH
Q 030931 2 LRVKQPYCTSCTLVKFY----LLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG 77 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~----~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~ 77 (169)
+++.+++|||||++++. ..+.||+++....+..+++.+.+|||||++.+...+..+++.+|++++|+|+++++++.
T Consensus 27 v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~ 106 (189)
T 2x77_A 27 MLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMG 106 (189)
T ss_dssp EEEETTSSHHHHHHHTCCSCCEEECSSTTCCEEEEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHH
T ss_pred EECCCCCCHHHHHHHHHcCCCCCcCCCCceEEEEEEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHH
Confidence 56789999999999872 34678888888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhhh
Q 030931 78 KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR 157 (169)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 157 (169)
....|+..++......+.|+++|+||+|+.+....+++.+.++.......+++++++||++|.|++++|+++.+.+.+.+
T Consensus 107 ~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 186 (189)
T 2x77_A 107 VAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLREQG 186 (189)
T ss_dssp HHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHHHHhcc
Confidence 99999999887655568999999999999877666777777765555666789999999999999999999999887653
No 11
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=1.8e-32 Score=187.54 Aligned_cols=156 Identities=38% Similarity=0.740 Sum_probs=132.6
Q ss_pred ccccCCCCCceeeeece----eeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH
Q 030931 2 LRVKQPYCTSCTLVKFY----LLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG 77 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~----~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~ 77 (169)
+++.+|+|||||++++. ..+.||+++....+.+++..+.+|||||++.+...+..+++.+|++++|+|++++.+++
T Consensus 23 v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~ 102 (183)
T 1moz_A 23 ILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMS 102 (183)
T ss_dssp EEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHH
T ss_pred EECCCCCCHHHHHHHHhcCCcCccCCcCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHH
Confidence 56789999999999873 46678888888888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhhh
Q 030931 78 KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR 157 (169)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 157 (169)
....|+..+++.....+.|+++|+||+|+.+....+++.+.++.......+++++++||++|.|++++|+++.+.+.+++
T Consensus 103 ~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~q 182 (183)
T 1moz_A 103 TASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEEQ 182 (183)
T ss_dssp HHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHHHhcc
Confidence 99999999877554568999999999999877677778777766555566789999999999999999999999887653
No 12
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=100.00 E-value=1.2e-32 Score=188.46 Aligned_cols=151 Identities=38% Similarity=0.661 Sum_probs=131.9
Q ss_pred ccccCCCCCceeeeece----eeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH
Q 030931 2 LRVKQPYCTSCTLVKFY----LLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG 77 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~----~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~ 77 (169)
+++.+++|||||+++|. ..+.||.+.....+..+++.+.+|||||++++..++..+++.+|++++|||+++..++.
T Consensus 26 v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~ 105 (181)
T 2h17_A 26 IVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERIS 105 (181)
T ss_dssp EEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHH
T ss_pred EECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHH
Confidence 56789999999999873 56778888888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHH
Q 030931 78 KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAST 152 (169)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 152 (169)
.+..|+..+++.....+.|+++|+||+|+.+....+++.+.+........+++++++||++|.|++++|+++.+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 106 VTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp HHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHTC
T ss_pred HHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHhh
Confidence 999999998775434689999999999998776777777776655555667899999999999999999999753
No 13
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=100.00 E-value=2.3e-32 Score=188.66 Aligned_cols=151 Identities=23% Similarity=0.411 Sum_probs=129.5
Q ss_pred ccccCCCCCceeeeece----eeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH
Q 030931 2 LRVKQPYCTSCTLVKFY----LLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG 77 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~----~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~ 77 (169)
+++.+|+|||||++++. ..+.||.+.....+..+++.+++|||||++.++.++..+++.+|++++|||++++++|+
T Consensus 28 ~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~ 107 (190)
T 1m2o_B 28 FLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFD 107 (190)
T ss_dssp EEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHH
T ss_pred EECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHH
Confidence 56789999999999873 35678888888888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCC-------CCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931 78 KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFD-------LKNRKWHIQGTCALKGDGLYEGLDWLA 150 (169)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 150 (169)
.+..|+..+++.....+.|+++|+||+|+.+..+.+++.+.+.... ....++++++|||++|+|++++|+++.
T Consensus 108 ~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 187 (190)
T 1m2o_B 108 EARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 187 (190)
T ss_dssp HHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHH
T ss_pred HHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHH
Confidence 9999999987754446899999999999987667777776655332 223567899999999999999999997
Q ss_pred HH
Q 030931 151 ST 152 (169)
Q Consensus 151 ~~ 152 (169)
+.
T Consensus 188 ~~ 189 (190)
T 1m2o_B 188 QY 189 (190)
T ss_dssp TT
T ss_pred hh
Confidence 53
No 14
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.5e-32 Score=186.43 Aligned_cols=154 Identities=34% Similarity=0.618 Sum_probs=131.9
Q ss_pred ccccCCCCCceeeeec------eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhh
Q 030931 2 LRVKQPYCTSCTLVKF------YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRER 75 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f------~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~ 75 (169)
+++.+|+|||||+++| ...+.||.++....+..+++.+.+|||||++.+...+..+++.+|++++|||+++..+
T Consensus 26 v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s 105 (190)
T 2h57_A 26 CLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLR 105 (190)
T ss_dssp EEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHH
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHH
Confidence 5778999999999976 3456789998888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCC--CCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHH
Q 030931 76 IGKAKQEFQAIIKDPFM--LNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL 153 (169)
Q Consensus 76 ~~~~~~~~~~~~~~~~~--~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~ 153 (169)
+..+..|+..++..... .+.|+++|+||+|+.+....+++.+.+........+++++++||++|.|++++|+++.+.+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 185 (190)
T 2h57_A 106 MVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQI 185 (190)
T ss_dssp HHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHHH
Confidence 99999999998775444 5899999999999987767777776665443445578899999999999999999999876
Q ss_pred Hh
Q 030931 154 KE 155 (169)
Q Consensus 154 ~~ 155 (169)
.+
T Consensus 186 ~~ 187 (190)
T 2h57_A 186 QT 187 (190)
T ss_dssp --
T ss_pred HH
Confidence 54
No 15
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.98 E-value=1.9e-32 Score=190.26 Aligned_cols=151 Identities=25% Similarity=0.448 Sum_probs=122.4
Q ss_pred ccccCCCCCceeeeece----eeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH
Q 030931 2 LRVKQPYCTSCTLVKFY----LLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG 77 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~----~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~ 77 (169)
+++.+|+|||||++++. ..+.||++.+...+..+++.+++|||||++.++.++..+++++|++++|||++++++|.
T Consensus 30 lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~ 109 (198)
T 1f6b_A 30 FLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLL 109 (198)
T ss_dssp EEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHH
T ss_pred EECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHH
Confidence 56789999999999884 35678888877888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCC---------C---CCceeEEEEeeeccCCCHHHH
Q 030931 78 KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFD---------L---KNRKWHIQGTCALKGDGLYEG 145 (169)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~---------~---~~~~~~~~~~Sa~~~~gi~~~ 145 (169)
.+..|+..+++.....+.|+++|+||+|+.+..+.+++.+.+.... + ....+++++|||++|+|++++
T Consensus 110 ~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l 189 (198)
T 1f6b_A 110 ESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEG 189 (198)
T ss_dssp HHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHH
T ss_pred HHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHH
Confidence 9999999988754456899999999999987667777766554321 1 125678999999999999999
Q ss_pred HHHHHHH
Q 030931 146 LDWLAST 152 (169)
Q Consensus 146 ~~~l~~~ 152 (169)
|+++.+.
T Consensus 190 ~~~l~~~ 196 (198)
T 1f6b_A 190 FRWMAQY 196 (198)
T ss_dssp HHHHHTT
T ss_pred HHHHHHh
Confidence 9999764
No 16
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.97 E-value=3.1e-31 Score=197.11 Aligned_cols=155 Identities=50% Similarity=0.913 Sum_probs=133.4
Q ss_pred ccccCCCCCceeeeece----eeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH
Q 030931 2 LRVKQPYCTSCTLVKFY----LLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG 77 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~----~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~ 77 (169)
|++.+++|||||+++|. ....||++..+..++..++.++||||||++.+..++..+++.+|++|+|||++++.+|.
T Consensus 170 ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~ 249 (329)
T 3o47_A 170 MVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVN 249 (329)
T ss_dssp EEESTTSSHHHHHHHTCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHH
T ss_pred EECCCCccHHHHHHHHhCCCCCCcccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHH
Confidence 56789999999999872 34458999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhh
Q 030931 78 KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM 156 (169)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (169)
.+..|+..++......++|+++|+||+|+.+....+++...++.......+++++++||++|.||+++|+++.+.+.++
T Consensus 250 ~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~~~ 328 (329)
T 3o47_A 250 EAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 328 (329)
T ss_dssp HHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHHhc
Confidence 9999998888766556899999999999988777888888888776677888999999999999999999999987654
No 17
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.97 E-value=7.8e-31 Score=204.62 Aligned_cols=160 Identities=51% Similarity=0.873 Sum_probs=138.5
Q ss_pred ccccCCCCCceeeeec----eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH
Q 030931 2 LRVKQPYCTSCTLVKF----YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG 77 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f----~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~ 77 (169)
|++.+++|||||+++| ...+.||++.++..++++++.+.+|||||++.+..++..+++.+|++|+|||++++++|.
T Consensus 327 lvG~~nvGKSsLl~~l~~~~~~~~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~ 406 (497)
T 3lvq_E 327 MLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRID 406 (497)
T ss_dssp EECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGGHH
T ss_pred EEcCCCCCHHHHHHHHhcCCCCCcCCccceeEEEEEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchhHHH
Confidence 5678999999999987 345678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhhh
Q 030931 78 KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR 157 (169)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 157 (169)
.+..|+.++++.....++|+++|+||+|+.+....+++...++.......+++++++||++|+||+++|++|.+.+.+..
T Consensus 407 ~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~~~~~ 486 (497)
T 3lvq_E 407 EARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKSKL 486 (497)
T ss_dssp HHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 99999999987655568999999999999887777888888877666677889999999999999999999999887765
Q ss_pred cccc
Q 030931 158 AAGY 161 (169)
Q Consensus 158 ~~~~ 161 (169)
...+
T Consensus 487 ~~~~ 490 (497)
T 3lvq_E 487 AAAL 490 (497)
T ss_dssp ----
T ss_pred CCCC
Confidence 4443
No 18
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.97 E-value=2.3e-31 Score=181.74 Aligned_cols=160 Identities=13% Similarity=0.075 Sum_probs=121.2
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEE-EEEEC--CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE-KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR 73 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 73 (169)
+++.+|+|||||+++| ...+.||.+..+. .+... .+.+++|||||++.+..++..+++.+|++++|||++++
T Consensus 11 ~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~ 90 (181)
T 3t5g_A 11 ILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSI 90 (181)
T ss_dssp EEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCH
T ss_pred EECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCH
Confidence 6779999999999976 4566677776543 23444 47889999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931 74 ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS 151 (169)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (169)
++++.+..|+..+.+.....+.|+++|+||+|+.+.. ..++..... ...+++++++||++|.|++++|+++.+
T Consensus 91 ~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 165 (181)
T 3t5g_A 91 KSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALA-----ESWNAAFLESSAKENQTAVDVFRRIIL 165 (181)
T ss_dssp HHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCEEEECCTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHH-----HHhCCcEEEEecCCCCCHHHHHHHHHH
Confidence 9999999999888775545689999999999986432 223322211 223457999999999999999999999
Q ss_pred HHHhhhccccccccccC
Q 030931 152 TLKEMRAAGYSSVGTSS 168 (169)
Q Consensus 152 ~~~~~~~~~~~~~~~~s 168 (169)
.+.+.+. ..+.|++|
T Consensus 166 ~~~~~~~--~~~~gkss 180 (181)
T 3t5g_A 166 EAEKMDG--ACSQGKSS 180 (181)
T ss_dssp HHHTC-------CCBSC
T ss_pred HHHHhcC--CcccCcCC
Confidence 9988763 34445544
No 19
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.97 E-value=6.1e-30 Score=176.61 Aligned_cols=150 Identities=16% Similarity=0.135 Sum_probs=121.7
Q ss_pred ccccCCCCCceeeeec----eee-----------eeeeeeEEEEEE-----EECCEEEEEEEcCCCCCchhhHHhhccCC
Q 030931 2 LRVKQPYCTSCTLVKF----YLL-----------FLLLVRFNVEKV-----QYKNVIFTVWDVGGQEKLRPLWRHYFNNT 61 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f----~~~-----------~~~t~~~~~~~~-----~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 61 (169)
|++.+++|||||++.+ ... +.||++.++... +...+.+++|||||++++..++..+++.+
T Consensus 19 vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 98 (198)
T 3t1o_A 19 YYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGV 98 (198)
T ss_dssp EECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHHHHHTTTC
T ss_pred EECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHHHHHHHhcC
Confidence 5778999999999743 222 456888776543 23568999999999999999999999999
Q ss_pred CEEEEEEECC------ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCcee-EEEEe
Q 030931 62 DGLIYVVDSL------DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKW-HIQGT 134 (169)
Q Consensus 62 ~~ii~v~d~~------~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 134 (169)
|++|+|||++ +.+++..+..|+.++. ....+.|+++|+||+|+.+....++..+... ..++ +++++
T Consensus 99 d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~--~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~ 171 (198)
T 3t1o_A 99 DGIVFVADSAPNRLRANAESMRNMRENLAEYG--LTLDDVPIVIQVNKRDLPDALPVEMVRAVVD-----PEGKFPVLEA 171 (198)
T ss_dssp CEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT--CCTTSSCEEEEEECTTSTTCCCHHHHHHHHC-----TTCCSCEEEC
T ss_pred CEEEEEEECCcchhhHhHHHHHHHHHHHHhhc--cccCCCCEEEEEEchhcccccCHHHHHHHHH-----hcCCceEEEE
Confidence 9999999999 5677888888888873 2346899999999999987777666655443 3345 79999
Q ss_pred eeccCCCHHHHHHHHHHHHHhhhc
Q 030931 135 CALKGDGLYEGLDWLASTLKEMRA 158 (169)
Q Consensus 135 Sa~~~~gi~~~~~~l~~~~~~~~~ 158 (169)
||++|.|++++|+++.+.+.++..
T Consensus 172 Sa~~~~gv~~l~~~l~~~i~~~~~ 195 (198)
T 3t1o_A 172 VATEGKGVFETLKEVSRLVLARVA 195 (198)
T ss_dssp BGGGTBTHHHHHHHHHHHHHHHHC
T ss_pred ecCCCcCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999988754
No 20
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.97 E-value=5.2e-30 Score=175.32 Aligned_cols=152 Identities=16% Similarity=0.255 Sum_probs=98.2
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEECC--EEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
+++.+++|||||+++| ...+.||++.++ ..+..++ +.+++|||||++.+..++..+++.+|++++|||+++
T Consensus 13 v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 92 (183)
T 2fu5_C 13 LIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITN 92 (183)
T ss_dssp EECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcC
Confidence 5678999999999987 345667777554 3455554 899999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 150 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 150 (169)
+.+++.+..|+..+.... ..+.|+++|+||+|+.+.. ..++..... ...+++++++||++|.|++++|+++.
T Consensus 93 ~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~l~~~l~ 166 (183)
T 2fu5_C 93 EKSFDNIRNWIRNIEEHA-SADVEKMILGNKCDVNDKRQVSKERGEKLA-----LDYGIKFMETSAKANINVENAFFTLA 166 (183)
T ss_dssp HHHHHHHHHHHHHHHHHS-CTTCEEEEEEEC--CCSCCCSCHHHHHHHH-----HHHTCEEEECCC---CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc-CCCCCEEEEEECccCCccCcCCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 999999999998886532 2479999999999997532 233322211 22346799999999999999999999
Q ss_pred HHHHhhhcc
Q 030931 151 STLKEMRAA 159 (169)
Q Consensus 151 ~~~~~~~~~ 159 (169)
+.+.+....
T Consensus 167 ~~i~~~~~~ 175 (183)
T 2fu5_C 167 RDIKAKMDK 175 (183)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhc
Confidence 998876543
No 21
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.96 E-value=1.6e-30 Score=175.08 Aligned_cols=150 Identities=14% Similarity=0.017 Sum_probs=98.7
Q ss_pred ccccCCCCCceeeeecee----eeeeeeeEEEE-EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChh
Q 030931 2 LRVKQPYCTSCTLVKFYL----LFLLLVRFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE 74 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~----~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 74 (169)
+++.+|+|||||++++.. ...++.+.... .+.. ..+.+.+||++|++.+..++..+++.++++++|||+++++
T Consensus 7 ~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 86 (166)
T 3q72_A 7 LLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKG 86 (166)
T ss_dssp EEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEEETTCHH
T ss_pred EECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHH
Confidence 577999999999998843 23344443332 2223 5678999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHH
Q 030931 75 RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAST 152 (169)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 152 (169)
+++.+..|+..+.+.....+.|+++|+||+|+.+.. ..++.. .+. ...+++++++||++|.|++++|+++.+.
T Consensus 87 s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~-~~~----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 161 (166)
T 3q72_A 87 SFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGR-ACA----VVFDCKFIETSAALHHNVQALFEGVVRQ 161 (166)
T ss_dssp HHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHH-HHH----HHTTCEEEECBGGGTBSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHH-HHH----HHhCCcEEEeccCCCCCHHHHHHHHHHH
Confidence 999999999998776555689999999999997532 222221 111 2234579999999999999999999998
Q ss_pred HHhh
Q 030931 153 LKEM 156 (169)
Q Consensus 153 ~~~~ 156 (169)
+.++
T Consensus 162 ~~~~ 165 (166)
T 3q72_A 162 IRLR 165 (166)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8764
No 22
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.96 E-value=1e-29 Score=176.81 Aligned_cols=150 Identities=19% Similarity=0.241 Sum_probs=114.1
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEECC--EEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
+++.+++|||||+++| ...+.||++.++ ..+..++ +.+++|||||++++..++..+++.+|++|+|||+++
T Consensus 34 vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~ 113 (201)
T 2hup_A 34 LVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITK 113 (201)
T ss_dssp EEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTB
T ss_pred EECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCC
Confidence 5678999999999976 456678877543 4455544 799999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCcee-EEEEeeeccCCCHHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKW-HIQGTCALKGDGLYEGLDWL 149 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~~l 149 (169)
+.+++.+..|+..+.... ..+.|+++|+||+|+.+. ...++..... ...++ +++++||++|.|++++|+++
T Consensus 114 ~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~~SA~~g~gi~~l~~~l 187 (201)
T 2hup_A 114 RSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLA-----EHYDILCAIETSAKDSSNVEEAFLRV 187 (201)
T ss_dssp HHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCSEEEECBTTTTBSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHH-----HHcCCCEEEEEeCCCCCCHHHHHHHH
Confidence 999999999998886533 357999999999999652 3333333221 12344 79999999999999999999
Q ss_pred HHHHHhhh
Q 030931 150 ASTLKEMR 157 (169)
Q Consensus 150 ~~~~~~~~ 157 (169)
.+.+.+..
T Consensus 188 ~~~i~~~~ 195 (201)
T 2hup_A 188 ATELIMRH 195 (201)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 99988765
No 23
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.96 E-value=2.4e-29 Score=172.68 Aligned_cols=146 Identities=10% Similarity=0.080 Sum_probs=114.5
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEEEEEECC--EEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChh
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEKVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE 74 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 74 (169)
|++.+|+|||||+++| ...+.||.+.....+...+ +.+++|||+|++.+. +++.++++++|||++++.
T Consensus 25 ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~ 99 (184)
T 3ihw_A 25 IVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEI 99 (184)
T ss_dssp EECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHH
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEEEEEECcCHH
Confidence 5678999999999976 4456777664445556644 778889999998876 778899999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC----CCCHhHHHhhhCCCCCCCc-eeEEEEeeeccCCCHHHHHHHH
Q 030931 75 RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG----AMTPMEVCEGLGLFDLKNR-KWHIQGTCALKGDGLYEGLDWL 149 (169)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~~~~~l 149 (169)
+|+.+..|+..+.......+.|+++|+||+|+.+ ....++..... ... .++|+++||++|.|++++|+++
T Consensus 100 s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~-----~~~~~~~~~e~Sa~~~~gv~~lf~~l 174 (184)
T 3ihw_A 100 SFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLS-----TDLKRCTYYETCATYGLNVERVFQDV 174 (184)
T ss_dssp HHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHH-----HHTTTCEEEEEBTTTTBTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHH-----HHcCCCeEEEecCCCCCCHHHHHHHH
Confidence 9999999999997765446899999999999842 22333322211 112 2579999999999999999999
Q ss_pred HHHHHhhh
Q 030931 150 ASTLKEMR 157 (169)
Q Consensus 150 ~~~~~~~~ 157 (169)
++.+.+.+
T Consensus 175 ~~~i~~~~ 182 (184)
T 3ihw_A 175 AQKVVALR 182 (184)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHh
Confidence 99887764
No 24
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=1.7e-29 Score=174.22 Aligned_cols=151 Identities=17% Similarity=0.227 Sum_probs=121.1
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
|++.+++|||||++++ ...+.||.+..+ ..+.. ..+.+.+|||||++.+..++..+++.+|++|+|||+++
T Consensus 20 v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~ 99 (195)
T 1x3s_A 20 IIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTR 99 (195)
T ss_dssp EECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcC
Confidence 5678999999999986 446677777554 33444 46889999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC-CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA-MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS 151 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (169)
+.++..+..|+..+.......+.|+++|+||+|+.+. ...++..... ...+++++++||+++.|++++|+++.+
T Consensus 100 ~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 174 (195)
T 1x3s_A 100 RDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFA-----RKHSMLFIEASAKTCDGVQCAFEELVE 174 (195)
T ss_dssp HHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHH-----HHcCCEEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999876554468999999999999543 2223222211 223467999999999999999999999
Q ss_pred HHHhhh
Q 030931 152 TLKEMR 157 (169)
Q Consensus 152 ~~~~~~ 157 (169)
.+.+..
T Consensus 175 ~~~~~~ 180 (195)
T 1x3s_A 175 KIIQTP 180 (195)
T ss_dssp HHHTSG
T ss_pred HHHhhh
Confidence 988754
No 25
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.96 E-value=2.2e-29 Score=172.52 Aligned_cols=160 Identities=21% Similarity=0.248 Sum_probs=122.3
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEECC--EEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
+++.+|+|||||+++| ...+.||.+.++ ..+..++ +.+.+|||||++.+...+..+++.+|++|+|||+++
T Consensus 15 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 94 (186)
T 2bme_A 15 VIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITS 94 (186)
T ss_dssp EEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcC
Confidence 5678999999999976 455667777554 3445544 789999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 150 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 150 (169)
+.++..+..|+..+.... ..+.|+++|+||+|+.+. ....+..... ...+++++++||++|.|++++|+++.
T Consensus 95 ~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~ 168 (186)
T 2bme_A 95 RETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRFA-----QENELMFLETSALTGENVEEAFVQCA 168 (186)
T ss_dssp HHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEecCCCCCCHHHHHHHHH
Confidence 999999999988775432 257999999999998542 2223322211 22346799999999999999999999
Q ss_pred HHHHhhhcccccccccc
Q 030931 151 STLKEMRAAGYSSVGTS 167 (169)
Q Consensus 151 ~~~~~~~~~~~~~~~~~ 167 (169)
+.+.+........+.+|
T Consensus 169 ~~~~~~~~~~~~~~~~~ 185 (186)
T 2bme_A 169 RKILNKIESGELDPERM 185 (186)
T ss_dssp HHHHHHHHSCC------
T ss_pred HHHHHHhhhcCCCcccc
Confidence 99988776665555554
No 26
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.96 E-value=3.5e-30 Score=180.85 Aligned_cols=152 Identities=13% Similarity=0.103 Sum_probs=118.2
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEEE---EEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK---VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR 73 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 73 (169)
+++.+++|||||+++| ...+.||++..+.. ++...+.+.+|||+|++++..++..+++.+|++|+|||++++
T Consensus 32 vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 111 (214)
T 3q3j_B 32 LVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRP 111 (214)
T ss_dssp EECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCT
T ss_pred EECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCH
Confidence 5678999999999976 55677888876542 333678999999999999999999999999999999999999
Q ss_pred hhHHH-HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--------------CCHhHHHhhhCCCCCCCcee-EEEEeeec
Q 030931 74 ERIGK-AKQEFQAIIKDPFMLNSVILVFANKQDMKGA--------------MTPMEVCEGLGLFDLKNRKW-HIQGTCAL 137 (169)
Q Consensus 74 ~~~~~-~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 137 (169)
.+|.. +..|+..+.+.. ++.|+++|+||+|+.+. ...++.... ....++ +|++|||+
T Consensus 112 ~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~e~SA~ 184 (214)
T 3q3j_B 112 ETVDSALKKWRTEILDYC--PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAI-----AKQLGAEIYLEGSAF 184 (214)
T ss_dssp HHHHHHHTHHHHHHHHHC--TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHH-----HHHHTCSEEEECCTT
T ss_pred HHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHH-----HHHcCCCEEEEeccC
Confidence 99998 688888876543 58999999999999642 222222111 123345 79999999
Q ss_pred cCCC-HHHHHHHHHHHHHhhhccc
Q 030931 138 KGDG-LYEGLDWLASTLKEMRAAG 160 (169)
Q Consensus 138 ~~~g-i~~~~~~l~~~~~~~~~~~ 160 (169)
+|.| ++++|+++.+.+.+.....
T Consensus 185 ~g~g~v~~lf~~l~~~~~~~~~~~ 208 (214)
T 3q3j_B 185 TSEKSIHSIFRTASMLCLNKPSPL 208 (214)
T ss_dssp TCHHHHHHHHHHHHHHHHC-----
T ss_pred CCcccHHHHHHHHHHHHhccCcCC
Confidence 9998 9999999999988776443
No 27
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.96 E-value=1.9e-30 Score=176.83 Aligned_cols=154 Identities=14% Similarity=0.190 Sum_probs=121.5
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEEE-EEEC--CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK-VQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR 73 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~-~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 73 (169)
+++..|+|||||++++ ...+.||.+..+.. +..+ .+.+.+|||||++++..++..+++.++++++|||++++
T Consensus 14 v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 93 (181)
T 2fn4_A 14 VVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDR 93 (181)
T ss_dssp EEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCH
T ss_pred EECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCH
Confidence 5678999999999976 45566777765543 4444 47899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931 74 ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS 151 (169)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (169)
.++..+..|+..+++.....+.|+++|+||+|+.+. ...++... +. ...+++++++||++|.|++++|+++.+
T Consensus 94 ~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~~----~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 168 (181)
T 2fn4_A 94 QSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASA-FG----ASHHVAYFEASAKLRLNVDEAFEQLVR 168 (181)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHH-HH----HHTTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHH-HH----HHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence 999999999988866444457999999999998653 22222221 21 223567999999999999999999999
Q ss_pred HHHhhhccc
Q 030931 152 TLKEMRAAG 160 (169)
Q Consensus 152 ~~~~~~~~~ 160 (169)
.+.+.....
T Consensus 169 ~~~~~~~~~ 177 (181)
T 2fn4_A 169 AVRKYQEQE 177 (181)
T ss_dssp HHHHHTTC-
T ss_pred HHHHhhccC
Confidence 998765443
No 28
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=1.5e-30 Score=175.61 Aligned_cols=147 Identities=18% Similarity=0.232 Sum_probs=115.5
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
+++.+|+|||||++++ ...+.||.+..+ ..+.. ..+.+.+|||||++.+...+..+++.+|++++|||+++
T Consensus 8 v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 87 (170)
T 1ek0_A 8 LLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTK 87 (170)
T ss_dssp EECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCC
Confidence 5678999999999876 445667777554 33444 45789999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC-----CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA-----MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD 147 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 147 (169)
+.++..+..|+..+.... ..+.|+++|+||+|+.+. ...++... + ....+++++++||++|.|++++|+
T Consensus 88 ~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~-~----~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1ek0_A 88 PQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEK-L----AEEKGLLFFETSAKTGENVNDVFL 161 (170)
T ss_dssp HHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHH-H----HHHHTCEEEECCTTTCTTHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHH-H----HHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999998886533 257999999999998643 12222111 1 122346799999999999999999
Q ss_pred HHHHHHH
Q 030931 148 WLASTLK 154 (169)
Q Consensus 148 ~l~~~~~ 154 (169)
++.+.+.
T Consensus 162 ~l~~~i~ 168 (170)
T 1ek0_A 162 GIGEKIP 168 (170)
T ss_dssp HHHTTSC
T ss_pred HHHHHHh
Confidence 9987653
No 29
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.96 E-value=1.8e-30 Score=180.40 Aligned_cols=153 Identities=10% Similarity=0.045 Sum_probs=117.1
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEEE---EEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK---VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR 73 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 73 (169)
|++.+|+|||||+++| ...+.||.+..+.. ++...+.+.+|||||++.+..++..+++.+|++++|||++++
T Consensus 29 vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 108 (201)
T 3oes_A 29 ILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSL 108 (201)
T ss_dssp EEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCH
T ss_pred EECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCH
Confidence 5779999999999976 45566777755432 334678999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931 74 ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS 151 (169)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (169)
.+++.+..|+..+.......+.|+++|+||+|+.+.. ...+... + ....+++++++||++|.|++++|+++.+
T Consensus 109 ~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 183 (201)
T 3oes_A 109 HSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKK-L----AESWGATFMESSARENQLTQGIFTKVIQ 183 (201)
T ss_dssp HHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHH-H----HHHHTCEEEECCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHH-H----HHHhCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 9999999999999876555689999999999986432 2222211 1 1233457999999999999999999999
Q ss_pred HHHhhhcc
Q 030931 152 TLKEMRAA 159 (169)
Q Consensus 152 ~~~~~~~~ 159 (169)
.+.+....
T Consensus 184 ~i~~~~~~ 191 (201)
T 3oes_A 184 EIARVENS 191 (201)
T ss_dssp HHHHC---
T ss_pred HHHhhhhh
Confidence 99887544
No 30
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.96 E-value=3.6e-29 Score=172.23 Aligned_cols=152 Identities=16% Similarity=0.248 Sum_probs=121.7
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEE---EEEEC-----------CEEEEEEEcCCCCCchhhHHhhccCCC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE---KVQYK-----------NVIFTVWDVGGQEKLRPLWRHYFNNTD 62 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~---~~~~~-----------~~~~~i~D~~G~~~~~~~~~~~~~~~~ 62 (169)
|++.+|+|||||++++ .+.+.||++.++. .+... .+.+.+|||||++.+...+..+++.+|
T Consensus 16 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 95 (195)
T 3bc1_A 16 ALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAM 95 (195)
T ss_dssp EECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHHHTTTTCS
T ss_pred EECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHHHHHcCCC
Confidence 5678999999999976 4566788887665 33333 579999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCC
Q 030931 63 GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGD 140 (169)
Q Consensus 63 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 140 (169)
++|+|||++++.++..+..|+..+.......+.|+++|+||+|+.+. ...++..... ...+++++++||++|.
T Consensus 96 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~ 170 (195)
T 3bc1_A 96 GFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELA-----EKYGIPYFETSAANGT 170 (195)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCCEEECCTTTCT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHH-----HHcCCCEEEEECCCCC
Confidence 99999999999999999999988876544468999999999999652 2223322211 1223469999999999
Q ss_pred CHHHHHHHHHHHHHhhhc
Q 030931 141 GLYEGLDWLASTLKEMRA 158 (169)
Q Consensus 141 gi~~~~~~l~~~~~~~~~ 158 (169)
|++++|+++.+.+.++..
T Consensus 171 ~v~~l~~~l~~~~~~~~~ 188 (195)
T 3bc1_A 171 NISHAIEMLLDLIMKRME 188 (195)
T ss_dssp THHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhh
Confidence 999999999998887643
No 31
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.96 E-value=1.9e-29 Score=172.47 Aligned_cols=149 Identities=17% Similarity=0.136 Sum_probs=117.6
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEEE-EEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK-VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR 73 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~-~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 73 (169)
+++.+|+|||||+++| ...+.||.+..+.. +.. ..+.+++|||||++.+..++..+++.+|++++|||++++
T Consensus 23 v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 102 (183)
T 3kkq_A 23 VVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDK 102 (183)
T ss_dssp EECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCH
T ss_pred EECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCH
Confidence 5779999999999986 45666777755432 333 356678899999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeec-cCCCHHHHHHHHH
Q 030931 74 ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCAL-KGDGLYEGLDWLA 150 (169)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~gi~~~~~~l~ 150 (169)
.+++.+..|+..+.+.....+.|+++|+||+|+.+. ...++..... ...+++++++||+ +|.|++++|+++.
T Consensus 103 ~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~~v~~l~~~l~ 177 (183)
T 3kkq_A 103 ASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMA-----TKYNIPYIETSAKDPPLNVDKTFHDLV 177 (183)
T ss_dssp HHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHH-----HHHTCCEEEEBCSSSCBSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHH-----HHhCCeEEEeccCCCCCCHHHHHHHHH
Confidence 999999999888866444468999999999998652 2333222211 2223569999999 9999999999999
Q ss_pred HHHHh
Q 030931 151 STLKE 155 (169)
Q Consensus 151 ~~~~~ 155 (169)
+.+.+
T Consensus 178 ~~i~~ 182 (183)
T 3kkq_A 178 RVIRQ 182 (183)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 98765
No 32
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.96 E-value=6.1e-30 Score=172.21 Aligned_cols=149 Identities=13% Similarity=0.101 Sum_probs=117.5
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEEE-EEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK-VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR 73 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~-~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 73 (169)
+++.+|+|||||++++ ...+.||.+..+.. +.. ..+.+.+|||||++.+..++..+++.++++++|||++++
T Consensus 8 v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 87 (167)
T 1c1y_A 8 VLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQ 87 (167)
T ss_dssp EECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCH
T ss_pred EECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCH
Confidence 5678999999999976 45667787765533 233 468899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931 74 ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS 151 (169)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (169)
.+++.+..|+..+.+.....+.|+++|+||+|+.+.. ..++...... ...+++++++||++|.|++++|+++.+
T Consensus 88 ~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 163 (167)
T 1c1y_A 88 STFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR----QWCNCAFLESSAKSKINVNEIFYDLVR 163 (167)
T ss_dssp HHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH----HTTSCEEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHH----HccCCcEEEecCCCCCCHHHHHHHHHH
Confidence 9999999998888664334689999999999996532 2233222111 112467999999999999999999998
Q ss_pred HHH
Q 030931 152 TLK 154 (169)
Q Consensus 152 ~~~ 154 (169)
.+.
T Consensus 164 ~i~ 166 (167)
T 1c1y_A 164 QIN 166 (167)
T ss_dssp HHT
T ss_pred HHh
Confidence 763
No 33
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.96 E-value=4.7e-29 Score=175.07 Aligned_cols=151 Identities=17% Similarity=0.283 Sum_probs=120.2
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEE--EEEEC------------CEEEEEEEcCCCCCchhhHHhhccCCC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE--KVQYK------------NVIFTVWDVGGQEKLRPLWRHYFNNTD 62 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~--~~~~~------------~~~~~i~D~~G~~~~~~~~~~~~~~~~ 62 (169)
|++.+++|||||+++| ...+.||++.++. .+.+. .+.+++|||||++++...+..+++.+|
T Consensus 30 vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 109 (217)
T 2f7s_A 30 ALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAM 109 (217)
T ss_dssp EESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHHHTTCC
T ss_pred EECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHHHHhcCCC
Confidence 5678999999999976 4567788886553 33332 688999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCC
Q 030931 63 GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGD 140 (169)
Q Consensus 63 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 140 (169)
++|+|||+++..++..+..|+..+.......+.|+++|+||+|+.+. ...++..... ...+++++++||+++.
T Consensus 110 ~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~g~ 184 (217)
T 2f7s_A 110 GFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELA-----DKYGIPYFETSAATGQ 184 (217)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCCEEEEBTTTTB
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHH-----HHCCCcEEEEECCCCC
Confidence 99999999999999999999988765444468999999999999653 2222222211 1223569999999999
Q ss_pred CHHHHHHHHHHHHHhhh
Q 030931 141 GLYEGLDWLASTLKEMR 157 (169)
Q Consensus 141 gi~~~~~~l~~~~~~~~ 157 (169)
|++++|+++.+.+.+..
T Consensus 185 gi~~l~~~l~~~i~~~~ 201 (217)
T 2f7s_A 185 NVEKAVETLLDLIMKRM 201 (217)
T ss_dssp THHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999887753
No 34
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.96 E-value=3.3e-29 Score=174.03 Aligned_cols=159 Identities=21% Similarity=0.251 Sum_probs=118.5
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEECC--EEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
+++.+++|||||+++| ...+.||++..+ ..+..++ +.+.+|||||++.+..++..+++.+|++|+|||+++
T Consensus 30 v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 109 (200)
T 2o52_A 30 VIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITS 109 (200)
T ss_dssp EEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTC
T ss_pred EECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcC
Confidence 5678999999999986 355667777443 4455544 899999999999988889999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 150 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 150 (169)
+.+++.+..|+..+.... ..+.|+++|+||+|+.+. ....+..... ...+++++++||++|.|++++|+++.
T Consensus 110 ~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~SA~~g~gi~~l~~~l~ 183 (200)
T 2o52_A 110 RETYNSLAAWLTDARTLA-SPNIVVILCGNKKDLDPEREVTFLEASRFA-----QENELMFLETSALTGENVEEAFLKCA 183 (200)
T ss_dssp HHHHHTHHHHHHHHHHHT-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEEECTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCcccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 999999999988875532 257999999999998642 2223322211 22346799999999999999999999
Q ss_pred HHHHhhhccccccccc
Q 030931 151 STLKEMRAAGYSSVGT 166 (169)
Q Consensus 151 ~~~~~~~~~~~~~~~~ 166 (169)
+.+.++.......+++
T Consensus 184 ~~i~~~~~~~~~~~~~ 199 (200)
T 2o52_A 184 RTILNKIDSGELDPER 199 (200)
T ss_dssp HHHHHHHHTTSSCGGG
T ss_pred HHHHHHHhcCCCCccc
Confidence 9998876655545544
No 35
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=4.4e-29 Score=173.73 Aligned_cols=151 Identities=18% Similarity=0.191 Sum_probs=119.6
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEE--EEEEC--CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE--KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
|++.+|+|||||+++| ...+.||++.++. .+..+ .+.+++|||||++++..++..+++.+|++|+|||+++
T Consensus 31 lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~ 110 (201)
T 2ew1_A 31 LIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITC 110 (201)
T ss_dssp EEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTC
T ss_pred EECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCC
Confidence 5678999999999976 4566778776543 45554 4789999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 150 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 150 (169)
+.+++.+..|+..+.... ..+.|+++|+||+|+.+. ...++..... ...+++++++||++|.|++++|+++.
T Consensus 111 ~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~g~gv~~l~~~l~ 184 (201)
T 2ew1_A 111 EESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAEEFS-----EAQDMYYLETSAKESDNVEKLFLDLA 184 (201)
T ss_dssp HHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCSSCHHHHHHHH-----HHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 999999999988875532 247899999999998642 2223322211 12345699999999999999999999
Q ss_pred HHHHhhhc
Q 030931 151 STLKEMRA 158 (169)
Q Consensus 151 ~~~~~~~~ 158 (169)
+.+.+...
T Consensus 185 ~~i~~~~~ 192 (201)
T 2ew1_A 185 CRLISEAR 192 (201)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHh
Confidence 98887643
No 36
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.96 E-value=6.8e-29 Score=167.56 Aligned_cols=150 Identities=14% Similarity=0.055 Sum_probs=108.0
Q ss_pred ccccCCCCCceeeeecee-----e--eeeeeeEEEEEEEE--CCEEEEEEEcCCCCCchh-hHHhhccCCCEEEEEEECC
Q 030931 2 LRVKQPYCTSCTLVKFYL-----L--FLLLVRFNVEKVQY--KNVIFTVWDVGGQEKLRP-LWRHYFNNTDGLIYVVDSL 71 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~-----~--~~~t~~~~~~~~~~--~~~~~~i~D~~G~~~~~~-~~~~~~~~~~~ii~v~d~~ 71 (169)
+++.+|+|||||+++|.. . ..++.......+.. ..+.+.+|||||++.+.. ++..+++.+|++++|||++
T Consensus 7 ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~ 86 (169)
T 3q85_A 7 LVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVT 86 (169)
T ss_dssp EECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEEEEETT
T ss_pred EECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEEEEECC
Confidence 577999999999998721 1 22222333344444 357889999999998876 7778899999999999999
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHH
Q 030931 72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149 (169)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 149 (169)
++++++.+..|+..+.......+.|+++|+||+|+.+. ...++..... ...+++++++||++|.|++++|+++
T Consensus 87 ~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~l~~~l 161 (169)
T 3q85_A 87 DRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLA-----GTLSCKHIETSAALHHNTRELFEGA 161 (169)
T ss_dssp CHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHH-----HHcCCcEEEecCccCCCHHHHHHHH
Confidence 99999999999999877554458999999999998642 2333322211 2334579999999999999999999
Q ss_pred HHHHHhh
Q 030931 150 ASTLKEM 156 (169)
Q Consensus 150 ~~~~~~~ 156 (169)
.+.+..+
T Consensus 162 ~~~i~~~ 168 (169)
T 3q85_A 162 VRQIRLR 168 (169)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9988664
No 37
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.96 E-value=3.5e-29 Score=171.75 Aligned_cols=152 Identities=12% Similarity=0.162 Sum_probs=115.7
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEE-EEEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV-EKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR 73 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~-~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 73 (169)
+++.+|+|||||++++ ...+.+|.+... ..+.. ..+.+.+|||||++.+..++..+++.++++++|||++++
T Consensus 9 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~ 88 (189)
T 4dsu_A 9 VVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNT 88 (189)
T ss_dssp EECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCH
T ss_pred EECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCH
Confidence 5779999999999976 344555555333 23344 346688899999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHH
Q 030931 74 ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL 153 (169)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~ 153 (169)
.+++.+..|+..+.......+.|+++|+||+|+.+.....+....+. ...+++++++||++|.|++++|+++.+.+
T Consensus 89 ~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 164 (189)
T 4dsu_A 89 KSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLA----RSYGIPFIETSAKTRQGVDDAFYTLVREI 164 (189)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHH----HHHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHH----HHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999998887755556899999999999975432222222221 12234699999999999999999999988
Q ss_pred Hhhh
Q 030931 154 KEMR 157 (169)
Q Consensus 154 ~~~~ 157 (169)
.+..
T Consensus 165 ~~~~ 168 (189)
T 4dsu_A 165 RKHK 168 (189)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 7754
No 38
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.96 E-value=1.2e-29 Score=172.04 Aligned_cols=152 Identities=13% Similarity=0.000 Sum_probs=109.2
Q ss_pred ccccCCCCCceeeeeceee----eeeeeeEE--EEEEEEC--CEEEEEEEcCCCCC--chhhHHhhccCCCEEEEEEECC
Q 030931 2 LRVKQPYCTSCTLVKFYLL----FLLLVRFN--VEKVQYK--NVIFTVWDVGGQEK--LRPLWRHYFNNTDGLIYVVDSL 71 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~----~~~t~~~~--~~~~~~~--~~~~~i~D~~G~~~--~~~~~~~~~~~~~~ii~v~d~~ 71 (169)
+++.+|+|||||+++|... ..++.+.+ ...+... .+.+.+|||||++. +..++..+++.++++++|||++
T Consensus 9 i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~ 88 (175)
T 2nzj_A 9 LLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIA 88 (175)
T ss_dssp EECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEEEEEEETT
T ss_pred EECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECC
Confidence 5778999999999988322 22444433 3334443 46899999999988 5677788999999999999999
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHH
Q 030931 72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149 (169)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 149 (169)
++.+++.+..|+..+.+.....+.|+++|+||+|+.+.. ..++... + ....+++++++||++|.|++++|+++
T Consensus 89 ~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~~~Sa~~g~gi~~l~~~l 163 (175)
T 2nzj_A 89 DRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRA-C----AVVFDCKFIETSATLQHNVAELFEGV 163 (175)
T ss_dssp CHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHH-H----HHHHTSEEEECBTTTTBSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHH-H----HHHcCCeEEEEecCCCCCHHHHHHHH
Confidence 999999999999888765444589999999999997542 2222211 1 11234579999999999999999999
Q ss_pred HHHHHhhhc
Q 030931 150 ASTLKEMRA 158 (169)
Q Consensus 150 ~~~~~~~~~ 158 (169)
.+.+.+.+.
T Consensus 164 ~~~~~~~~~ 172 (175)
T 2nzj_A 164 VRQLRLRRR 172 (175)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhhc
Confidence 998877653
No 39
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.96 E-value=4.3e-29 Score=167.95 Aligned_cols=149 Identities=16% Similarity=0.146 Sum_probs=115.6
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEE-EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR 73 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 73 (169)
+++.+|+|||||++++ ...+.||.+..+. .+.. ..+.+.+|||||++++..++..+++.++++++|||++++
T Consensus 9 v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 88 (168)
T 1u8z_A 9 MVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEM 88 (168)
T ss_dssp EECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCH
T ss_pred EECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCH
Confidence 5678999999999976 3455666665543 3444 347899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931 74 ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS 151 (169)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (169)
.+++.+..|+..+.......+.|+++|+||+|+.+. ...++..... ...+++++++||++|.|++++|+++.+
T Consensus 89 ~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 163 (168)
T 1u8z_A 89 ESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA-----DQWNVNYVETSAKTRANVDKVFFDLMR 163 (168)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHH-----HHcCCeEEEeCCCCCCCHHHHHHHHHH
Confidence 999999999888876544458999999999998643 2333332222 223457999999999999999999999
Q ss_pred HHHh
Q 030931 152 TLKE 155 (169)
Q Consensus 152 ~~~~ 155 (169)
.+.+
T Consensus 164 ~i~~ 167 (168)
T 1u8z_A 164 EIRA 167 (168)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 8764
No 40
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.96 E-value=1.3e-29 Score=175.53 Aligned_cols=151 Identities=15% Similarity=0.085 Sum_probs=115.1
Q ss_pred ccccCCCCCceeeeecee-----eeeeeee--EEEEEEEE--CCEEEEEEEcCCCCCchh-hHHhhccCCCEEEEEEECC
Q 030931 2 LRVKQPYCTSCTLVKFYL-----LFLLLVR--FNVEKVQY--KNVIFTVWDVGGQEKLRP-LWRHYFNNTDGLIYVVDSL 71 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~-----~~~~t~~--~~~~~~~~--~~~~~~i~D~~G~~~~~~-~~~~~~~~~~~ii~v~d~~ 71 (169)
|++.+|+|||||+++|.. .+.|+.+ .....+.. ..+.+.+|||+|++++.. ++..+++.++++|+|||++
T Consensus 28 vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~ 107 (195)
T 3cbq_A 28 LVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVT 107 (195)
T ss_dssp EECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETT
T ss_pred EECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECC
Confidence 677899999999999832 1223333 23333444 457889999999998765 7888999999999999999
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHH
Q 030931 72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149 (169)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 149 (169)
++.+|+.+..|+..+.......+.|+++|+||+|+.+. ...++... +. ...+++++++||++|.|++++|+++
T Consensus 108 ~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~a----~~~~~~~~e~Sa~~~~~v~~lf~~l 182 (195)
T 3cbq_A 108 DRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRH-LA----GTLSCKHIETSAALHHNTRELFEGA 182 (195)
T ss_dssp CHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHH-HH----HHTTCEEEEEBTTTTBSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHH-HH----HHhCCEEEEEcCCCCCCHHHHHHHH
Confidence 99999999999988866443357999999999999653 23333222 11 1224579999999999999999999
Q ss_pred HHHHHhhh
Q 030931 150 ASTLKEMR 157 (169)
Q Consensus 150 ~~~~~~~~ 157 (169)
++.+.+.+
T Consensus 183 ~~~i~~~~ 190 (195)
T 3cbq_A 183 VRQIRLRR 190 (195)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHhc
Confidence 99887654
No 41
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.96 E-value=5.3e-29 Score=171.99 Aligned_cols=149 Identities=15% Similarity=0.188 Sum_probs=116.9
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEEE-EEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK-VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR 73 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~-~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 73 (169)
+++.+|+|||||+++| ...+.||.+..+.. +.. ..+.+++|||||++.+..++..+++.+|++++|||++++
T Consensus 28 ~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 107 (194)
T 3reg_A 28 VVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNR 107 (194)
T ss_dssp EECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCH
T ss_pred EECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCH
Confidence 5678999999999986 45667888876554 333 457789999999999999999999999999999999999
Q ss_pred hhHHHH-HHHHHHHhcCCCCCCCeEEEEEeCCCCCCC----CCHhHHHhhhCCCCCCCceeE-EEEeeeccCCCHHHHHH
Q 030931 74 ERIGKA-KQEFQAIIKDPFMLNSVILVFANKQDMKGA----MTPMEVCEGLGLFDLKNRKWH-IQGTCALKGDGLYEGLD 147 (169)
Q Consensus 74 ~~~~~~-~~~~~~~~~~~~~~~~piivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~~~~ 147 (169)
.++..+ ..|+..+... .++.|+++|+||+|+.+. ...++..... ...++. ++++||++|.|++++|+
T Consensus 108 ~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~~l~~ 180 (194)
T 3reg_A 108 TSFDNISTKWEPEIKHY--IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLC-----QKLGCVAYIEASSVAKIGLNEVFE 180 (194)
T ss_dssp HHHHHHHHTHHHHHHHH--CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHH-----HHHTCSCEEECBTTTTBSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccCCCCcccHHHHHHHH-----HhcCCCEEEEeecCCCCCHHHHHH
Confidence 999997 5677666443 257999999999998642 2222222211 122334 99999999999999999
Q ss_pred HHHHHHHhhh
Q 030931 148 WLASTLKEMR 157 (169)
Q Consensus 148 ~l~~~~~~~~ 157 (169)
++.+.+.+++
T Consensus 181 ~l~~~i~~~~ 190 (194)
T 3reg_A 181 KSVDCIFSNK 190 (194)
T ss_dssp HHHHHHHCSC
T ss_pred HHHHHHHhcC
Confidence 9999887765
No 42
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=1.2e-29 Score=172.93 Aligned_cols=150 Identities=19% Similarity=0.270 Sum_probs=109.7
Q ss_pred ccccCCCCCceeeeec------eeeeeeeeeEEEEE--EEEC--CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931 2 LRVKQPYCTSCTLVKF------YLLFLLLVRFNVEK--VQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL 71 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f------~~~~~~t~~~~~~~--~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~ 71 (169)
+++.+++|||||++++ ...+.||.+.++.. +... .+.+.+|||||++.+..++..+++.+|++++|||++
T Consensus 15 v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~ 94 (180)
T 2g6b_A 15 LVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVT 94 (180)
T ss_dssp EECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEEEEETT
T ss_pred EECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECC
Confidence 5678999999999987 23566777766543 3443 468999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHH
Q 030931 72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149 (169)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 149 (169)
++.+++.+..|+..+..... .+.|+++|+||+|+.+.. ..++..... ...+++++++||++|.|++++|+++
T Consensus 95 ~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l 168 (180)
T 2g6b_A 95 NKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERVVKREDGEKLA-----KEYGLPFMETSAKTGLNVDLAFTAI 168 (180)
T ss_dssp CHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTTSCCCSCHHHHHHHH-----HHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECcccCcccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999888765332 579999999999997532 222222111 1234569999999999999999999
Q ss_pred HHHHHhhh
Q 030931 150 ASTLKEMR 157 (169)
Q Consensus 150 ~~~~~~~~ 157 (169)
.+.+.+..
T Consensus 169 ~~~~~~~~ 176 (180)
T 2g6b_A 169 AKELKRRS 176 (180)
T ss_dssp HHHHHC--
T ss_pred HHHHHHHh
Confidence 99887654
No 43
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.96 E-value=5.4e-28 Score=166.88 Aligned_cols=153 Identities=22% Similarity=0.309 Sum_probs=119.2
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEECC--EEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
+++.+++|||||+++| ...+.|+.+..+ ..+...+ +.+.+|||||++.+..++..+++.+|++++|||+++
T Consensus 21 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 100 (196)
T 3tkl_A 21 LIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD 100 (196)
T ss_dssp EECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTC
T ss_pred EECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcC
Confidence 5678999999999976 445567766544 4455544 789999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 150 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 150 (169)
+.+++.+..|+..+.... ..+.|+++|+||+|+.+... ..+..... ...+++++++||++|.|++++|+++.
T Consensus 101 ~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gv~~l~~~l~ 174 (196)
T 3tkl_A 101 QESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFA-----DSLGIPFLETSAKNATNVEQSFMTMA 174 (196)
T ss_dssp HHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCCEEEECTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccccCHHHHHHHH-----HHcCCcEEEEeCCCCCCHHHHHHHHH
Confidence 999999999988875532 24799999999999965432 22221111 12234699999999999999999999
Q ss_pred HHHHhhhccc
Q 030931 151 STLKEMRAAG 160 (169)
Q Consensus 151 ~~~~~~~~~~ 160 (169)
+.+.+.....
T Consensus 175 ~~i~~~~~~~ 184 (196)
T 3tkl_A 175 AEIKKRMGPG 184 (196)
T ss_dssp HHHHHHC---
T ss_pred HHHHHHhccc
Confidence 9998875443
No 44
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.96 E-value=3.1e-29 Score=176.60 Aligned_cols=150 Identities=17% Similarity=0.218 Sum_probs=121.8
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEEEEEE----CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEKVQY----KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
+++.+|+|||||+++| ...+.||.+.+...... ..+.+.+|||||++.+..++..+++.++++++|||+++
T Consensus 20 v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~ 99 (221)
T 3gj0_A 20 LVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTS 99 (221)
T ss_dssp EEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCC
Confidence 5779999999999985 45667888766554333 56899999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAST 152 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 152 (169)
..++..+..|+..+.+.. ++.|+++|+||+|+.+.....+. .......+++++++||++|.|++++|+++.+.
T Consensus 100 ~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~-----~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 172 (221)
T 3gj0_A 100 RVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAKS-----IVFHRKKNLQYYDISAKSNYNFEKPFLWLARK 172 (221)
T ss_dssp HHHHHTHHHHHHHHHHHS--TTCCEEEEEECTTSSSCSSCGGG-----CCHHHHHTCEEEECBGGGTBTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC--CCCCEEEEEECCccccccccHHH-----HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 999999999999887643 47999999999999754322211 11123345689999999999999999999999
Q ss_pred HHhhhc
Q 030931 153 LKEMRA 158 (169)
Q Consensus 153 ~~~~~~ 158 (169)
+.....
T Consensus 173 l~~~~~ 178 (221)
T 3gj0_A 173 LIGDPN 178 (221)
T ss_dssp HHTCTT
T ss_pred HHhCcc
Confidence 887643
No 45
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.96 E-value=1.2e-29 Score=172.85 Aligned_cols=151 Identities=17% Similarity=0.242 Sum_probs=118.9
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEECC--EEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
+++.+|+|||||++++ ...+.||.+..+ ..+...+ +.+.+|||||++.+..++..+++.+|++++|||+++
T Consensus 14 v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 93 (181)
T 3tw8_B 14 IIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTS 93 (181)
T ss_dssp EECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCC
Confidence 5779999999999986 345556666443 4455555 889999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 150 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 150 (169)
+.++..+..|+..+.+.. ++.|+++|+||+|+.+.. ...+..... ...+++++++||++|.|++++|+++.
T Consensus 94 ~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~ 166 (181)
T 3tw8_B 94 AESFVNVKRWLHEINQNC--DDVCRILVGNKNDDPERKVVETEDAYKFA-----GQMGIQLFETSAKENVNVEEMFNCIT 166 (181)
T ss_dssp HHHHHHHHHHHHHHHHHC--TTSEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC--CCCCEEEEEECCCCchhcccCHHHHHHHH-----HHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999998886533 579999999999986532 222221111 22235699999999999999999999
Q ss_pred HHHHhhhcc
Q 030931 151 STLKEMRAA 159 (169)
Q Consensus 151 ~~~~~~~~~ 159 (169)
+.+.+.+..
T Consensus 167 ~~~~~~~~~ 175 (181)
T 3tw8_B 167 ELVLRAKKD 175 (181)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhh
Confidence 988886543
No 46
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.96 E-value=1.6e-28 Score=170.74 Aligned_cols=151 Identities=16% Similarity=0.148 Sum_probs=120.7
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEE-EEEEEC--CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV-EKVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR 73 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~-~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 73 (169)
+++.+|+|||||++++ ...+.||.+..+ ..+... .+.+.+|||||++.+..++..+++.++++++|||+++.
T Consensus 19 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~ 98 (206)
T 2bov_A 19 MVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEM 98 (206)
T ss_dssp EECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCH
T ss_pred EECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCH
Confidence 5678999999999976 345667776544 334444 46899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931 74 ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS 151 (169)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (169)
.++..+..|+..+.......+.|+++|+||+|+.+. ...++..... ...+++++++||++|.|++++|+++.+
T Consensus 99 ~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 173 (206)
T 2bov_A 99 ESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA-----EQWNVNYVETSAKTRANVDKVFFDLMR 173 (206)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEEECTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHH-----HHhCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 999999999988877554458999999999999653 2333332221 223457999999999999999999999
Q ss_pred HHHhhh
Q 030931 152 TLKEMR 157 (169)
Q Consensus 152 ~~~~~~ 157 (169)
.+.+.+
T Consensus 174 ~i~~~~ 179 (206)
T 2bov_A 174 EIRARK 179 (206)
T ss_dssp HHHHHH
T ss_pred HHHHcc
Confidence 887753
No 47
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.96 E-value=1.4e-28 Score=167.25 Aligned_cols=151 Identities=13% Similarity=0.162 Sum_probs=116.0
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEE--EEEECC--EEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE--KVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
+++.+|+|||||++++ ...+.||.+.++. .+..++ +.+.+|||||++.+...+..+++.+|++++|||+++
T Consensus 12 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~ 91 (177)
T 1wms_A 12 LLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDD 91 (177)
T ss_dssp EECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcC
Confidence 5678999999999976 4566778876543 344544 799999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcC---CCCCCCeEEEEEeCCCCCCC-CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKD---PFMLNSVILVFANKQDMKGA-MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDW 148 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~---~~~~~~piivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 148 (169)
..+++.+..|+..+... ....+.|+++|+||+|+.+. ...++...... ...+++++++||++|.|++++|++
T Consensus 92 ~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~l~~~ 167 (177)
T 1wms_A 92 SQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCR----DNGDYPYFETSAKDATNVAAAFEE 167 (177)
T ss_dssp HHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHH----HTTCCCEEECCTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHH----hcCCceEEEEeCCCCCCHHHHHHH
Confidence 99999998888877542 22357899999999999632 23333332221 123456999999999999999999
Q ss_pred HHHHHHhh
Q 030931 149 LASTLKEM 156 (169)
Q Consensus 149 l~~~~~~~ 156 (169)
+.+.+.+.
T Consensus 168 l~~~~~~~ 175 (177)
T 1wms_A 168 AVRRVLAT 175 (177)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhh
Confidence 99988653
No 48
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.96 E-value=3.4e-29 Score=170.36 Aligned_cols=151 Identities=14% Similarity=0.238 Sum_probs=117.1
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeee--EEEEEEEECC---EEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVR--FNVEKVQYKN---VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL 71 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~--~~~~~~~~~~---~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~ 71 (169)
+++.+++|||||++++ ...+.||++ +....+...+ +.+++|||||++.+..++..+++.+|++++|||++
T Consensus 11 v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~ 90 (178)
T 2hxs_A 11 VLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDIT 90 (178)
T ss_dssp EECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETT
T ss_pred EECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECC
Confidence 5678999999999987 345567877 4445566654 89999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHhcCCC--CCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHH
Q 030931 72 DRERIGKAKQEFQAIIKDPF--MLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD 147 (169)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~--~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 147 (169)
++.+++.+..|+..+..... ....|+++|+||+|+.+. ...++..... ...+++++++||++|.|++++|+
T Consensus 91 ~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~ 165 (178)
T 2hxs_A 91 NYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFC-----QENGFSSHFVSAKTGDSVFLCFQ 165 (178)
T ss_dssp CHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHH-----HHHTCEEEEECTTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHH-----HHcCCcEEEEeCCCCCCHHHHHH
Confidence 99999999888887754210 123448999999998652 2223222211 22346799999999999999999
Q ss_pred HHHHHHHhhh
Q 030931 148 WLASTLKEMR 157 (169)
Q Consensus 148 ~l~~~~~~~~ 157 (169)
++.+.+.+..
T Consensus 166 ~l~~~~~~~~ 175 (178)
T 2hxs_A 166 KVAAEILGIK 175 (178)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHHhhh
Confidence 9999887654
No 49
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.96 E-value=1.1e-28 Score=168.87 Aligned_cols=151 Identities=16% Similarity=0.147 Sum_probs=120.4
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEE-EEEEC--CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE-KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR 73 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 73 (169)
+++.+|+|||||++++ ...+.+|.+..+. .+... .+.+.+|||||++.+..++..+++.+|++++|||++++
T Consensus 23 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 102 (187)
T 2a9k_A 23 MVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEM 102 (187)
T ss_dssp EECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCH
T ss_pred EECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCH
Confidence 5678999999999976 3455666665543 34443 46899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931 74 ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS 151 (169)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (169)
.++..+..|+..+.......+.|+++|+||+|+.+. ...++..... ...+++++++||+++.|++++|+++.+
T Consensus 103 ~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 177 (187)
T 2a9k_A 103 ESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA-----EQWNVNYVETSAKTRANVDKVFFDLMR 177 (187)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHH-----HHcCCeEEEeCCCCCCCHHHHHHHHHH
Confidence 999999999888876544458999999999998653 2333333222 223457999999999999999999999
Q ss_pred HHHhhh
Q 030931 152 TLKEMR 157 (169)
Q Consensus 152 ~~~~~~ 157 (169)
.+.+.+
T Consensus 178 ~i~~~~ 183 (187)
T 2a9k_A 178 EIRARK 183 (187)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 887754
No 50
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=5.1e-30 Score=176.77 Aligned_cols=150 Identities=17% Similarity=0.251 Sum_probs=119.7
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEE--EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
|++.+++|||||+++| ...+.||.+..+. .+.. ..+.+.+|||||++.+..++..+++.+|++++|||+++
T Consensus 28 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 107 (191)
T 3dz8_A 28 IIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITN 107 (191)
T ss_dssp EEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTC
T ss_pred EECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcC
Confidence 5678999999999986 4666777774433 3333 67999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 150 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 150 (169)
+.+++.+..|+..+.... ..+.|+++|+||+|+.+.. ..++... + ....+++++++||++|.|++++|+++.
T Consensus 108 ~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 181 (191)
T 3dz8_A 108 EESFNAVQDWATQIKTYS-WDNAQVILVGNKCDMEEERVVPTEKGQL-L----AEQLGFDFFEASAKENISVRQAFERLV 181 (191)
T ss_dssp HHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHH-H----HHHHTCEEEECBTTTTBSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHH-H----HHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999988886532 3579999999999986432 2222211 1 122345799999999999999999999
Q ss_pred HHHHhhh
Q 030931 151 STLKEMR 157 (169)
Q Consensus 151 ~~~~~~~ 157 (169)
+.+.++.
T Consensus 182 ~~i~~~~ 188 (191)
T 3dz8_A 182 DAICDKM 188 (191)
T ss_dssp HHHHHHC
T ss_pred HHHHHhc
Confidence 9887764
No 51
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.96 E-value=2.3e-28 Score=169.85 Aligned_cols=150 Identities=16% Similarity=0.232 Sum_probs=118.7
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEE--EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
|++.+++|||||++++ ...+.||.+..+. .+.. ..+.+.+|||||++++..++..+++.+|++|+|||+++
T Consensus 13 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~ 92 (203)
T 1zbd_A 13 IIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITN 92 (203)
T ss_dssp EECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcC
Confidence 5678999999999976 3566778775543 3443 36799999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 150 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 150 (169)
+.+++.+..|+..+.... ..+.|+++|+||+|+.+.. ..++..... ...+++++++||++|.|++++|+++.
T Consensus 93 ~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~ 166 (203)
T 1zbd_A 93 EESFNAVQDWSTQIKTYS-WDNAQVLLVGNKCDMEDERVVSSERGRQLA-----DHLGFEFFEASAKDNINVKQTFERLV 166 (203)
T ss_dssp HHHHHHHHHHHHHHHHHS-CSSCEEEEEEECTTCTTSCCSCHHHHHHHH-----HHHTCEEEECBTTTTBSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCcccccCHHHHHHHH-----HHCCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999988875532 3578999999999996532 222222111 12345799999999999999999999
Q ss_pred HHHHhhh
Q 030931 151 STLKEMR 157 (169)
Q Consensus 151 ~~~~~~~ 157 (169)
+.+.++.
T Consensus 167 ~~i~~~~ 173 (203)
T 1zbd_A 167 DVICEKM 173 (203)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887753
No 52
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.96 E-value=1.7e-28 Score=168.86 Aligned_cols=150 Identities=16% Similarity=0.238 Sum_probs=118.3
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEE--EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
+++.+++|||||++++ ...+.+|.+.++. .+.. ..+.+.+|||||++.+...+..+++.+|++++|||+++
T Consensus 27 vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~ 106 (189)
T 2gf9_A 27 LIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIAN 106 (189)
T ss_dssp EECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCC
Confidence 5678999999999976 4556777775543 3343 46789999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 150 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 150 (169)
+.+++.+..|+..+.... ..+.|+++|+||+|+.+.. ..++..... ...+++++++||++|.|++++|+++.
T Consensus 107 ~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi~~l~~~l~ 180 (189)
T 2gf9_A 107 QESFAAVQDWATQIKTYS-WDNAQVILVGNKCDLEDERVVPAEDGRRLA-----DDLGFEFFEASAKENINVKQVFERLV 180 (189)
T ss_dssp HHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEECBTTTTBSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccCCCHHHHHHHH-----HHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999988875532 3579999999999986532 222222211 22345799999999999999999999
Q ss_pred HHHHhhh
Q 030931 151 STLKEMR 157 (169)
Q Consensus 151 ~~~~~~~ 157 (169)
+.+.++.
T Consensus 181 ~~i~~~~ 187 (189)
T 2gf9_A 181 DVICEKM 187 (189)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9887653
No 53
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.96 E-value=1.1e-28 Score=171.66 Aligned_cols=151 Identities=15% Similarity=0.088 Sum_probs=92.0
Q ss_pred ccccCCCCCceeeeece-------eeeeeeeeEE--EEEEEEC----CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEE
Q 030931 2 LRVKQPYCTSCTLVKFY-------LLFLLLVRFN--VEKVQYK----NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV 68 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~-------~~~~~t~~~~--~~~~~~~----~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~ 68 (169)
+++.+|+|||||+++|. ..+.||.+.+ ...+..+ .+.+.+|||||++.+..++..+++.+|++|+||
T Consensus 25 v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 104 (208)
T 2yc2_C 25 VVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVF 104 (208)
T ss_dssp EC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEE
T ss_pred EECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEE
Confidence 56789999999999773 3556777743 3445554 689999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhcCCC--CCCCeEEEEEeCCCCCC---CCCHhHHHhhhCCCCCCCceeEEEEeeecc-CCCH
Q 030931 69 DSLDRERIGKAKQEFQAIIKDPF--MLNSVILVFANKQDMKG---AMTPMEVCEGLGLFDLKNRKWHIQGTCALK-GDGL 142 (169)
Q Consensus 69 d~~~~~~~~~~~~~~~~~~~~~~--~~~~piivv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~~gi 142 (169)
|++++.+++.+..|+..+..... ..+.|+++|+||+|+.+ ....++..... ...+++++++||++ |.|+
T Consensus 105 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~gi 179 (208)
T 2yc2_C 105 DVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWA-----TTNTLDFFDVSANPPGKDA 179 (208)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHH-----HHTTCEEEECCC-------
T ss_pred ECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHH-----HHcCCEEEEeccCCCCcCH
Confidence 99999999999999988876432 25799999999999975 22333332221 22346799999999 9999
Q ss_pred HHHHHHHHHHHHhhh
Q 030931 143 YEGLDWLASTLKEMR 157 (169)
Q Consensus 143 ~~~~~~l~~~~~~~~ 157 (169)
+++|+++.+.+.+..
T Consensus 180 ~~l~~~i~~~~~~~~ 194 (208)
T 2yc2_C 180 DAPFLSIATTFYRNY 194 (208)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999887654
No 54
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.96 E-value=3e-28 Score=168.04 Aligned_cols=150 Identities=16% Similarity=0.188 Sum_probs=119.5
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEEE--EEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK--VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
|++.+|+|||||++++ ...+.+|++..+.. +.. ..+.+.+|||||++++..++..+++.++++|+|||+++
T Consensus 30 v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~ 109 (193)
T 2oil_A 30 LIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTK 109 (193)
T ss_dssp EESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTC
T ss_pred EECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCC
Confidence 5678999999999976 34566777755433 333 46889999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 150 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 150 (169)
+.++..+..|+..+.... ..+.|+++|+||+|+.+. ...++..... ...+++++++||++|.|++++|+++.
T Consensus 110 ~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~ 183 (193)
T 2oil_A 110 HQTYAVVERWLKELYDHA-EATIVVMLVGNKSDLSQAREVPTEEARMFA-----ENNGLLFLETSALDSTNVELAFETVL 183 (193)
T ss_dssp HHHHHTHHHHHHHHHTTS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEEECTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc-CCCCeEEEEEECCCcccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 999999999998886543 357999999999998653 2223322211 22346799999999999999999999
Q ss_pred HHHHhhh
Q 030931 151 STLKEMR 157 (169)
Q Consensus 151 ~~~~~~~ 157 (169)
+.+.++.
T Consensus 184 ~~i~~~~ 190 (193)
T 2oil_A 184 KEIFAKV 190 (193)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9887754
No 55
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.95 E-value=1.8e-28 Score=169.00 Aligned_cols=150 Identities=20% Similarity=0.267 Sum_probs=115.6
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEE--EEEEEEC--CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFN--VEKVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~--~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
+++.+++|||||+++| ...+.||.+.+ ...+..+ .+.+++|||||++.+..++..+++.++++|+|||+++
T Consensus 26 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~ 105 (191)
T 2a5j_A 26 IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR 105 (191)
T ss_dssp EESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTC
T ss_pred EECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCC
Confidence 5678999999999976 34556676643 3445554 4789999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 150 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 150 (169)
..+++.+..|+..+.... ..+.|+++|+||+|+.+. ...++..... ...+++++++||++|.|++++|+++.
T Consensus 106 ~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~ 179 (191)
T 2a5j_A 106 RETFNHLTSWLEDARQHS-SSNMVIMLIGNKSDLESRRDVKREEGEAFA-----REHGLIFMETSAKTACNVEEAFINTA 179 (191)
T ss_dssp HHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEEECTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCCccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 999999999998886532 257999999999999642 2233322211 22345799999999999999999999
Q ss_pred HHHHhhh
Q 030931 151 STLKEMR 157 (169)
Q Consensus 151 ~~~~~~~ 157 (169)
+.+.++.
T Consensus 180 ~~i~~~~ 186 (191)
T 2a5j_A 180 KEIYRKI 186 (191)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988764
No 56
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.95 E-value=1.2e-28 Score=167.99 Aligned_cols=150 Identities=20% Similarity=0.220 Sum_probs=116.6
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
+++.+++|||||++++ ...+.+|++..+ ..+.. ..+.+.+|||||++.+...+..+++.+|++++|||+++
T Consensus 17 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 96 (181)
T 2efe_B 17 LLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTN 96 (181)
T ss_dssp EECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTC
T ss_pred EECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCC
Confidence 5678999999999987 334456776443 34444 36789999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 150 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 150 (169)
+.+++.+..|+..+.... .++.|+++|+||+|+.+.. ..++..... ...+++++++||++|.|++++|+++.
T Consensus 97 ~~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi~~l~~~l~ 170 (181)
T 2efe_B 97 QASFERAKKWVQELQAQG-NPNMVMALAGNKSDLLDARKVTAEDAQTYA-----QENGLFFMETSAKTATNVKEIFYEIA 170 (181)
T ss_dssp HHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCEEEECCSSSCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccccCCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 999999999998886643 2589999999999996532 233332221 22345799999999999999999999
Q ss_pred HHHHhhh
Q 030931 151 STLKEMR 157 (169)
Q Consensus 151 ~~~~~~~ 157 (169)
+.+.+..
T Consensus 171 ~~~~~~~ 177 (181)
T 2efe_B 171 RRLPRVQ 177 (181)
T ss_dssp HTCC---
T ss_pred HHHHhcC
Confidence 8776543
No 57
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.95 E-value=1e-28 Score=166.48 Aligned_cols=147 Identities=21% Similarity=0.236 Sum_probs=116.1
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
+++.+++|||||++++ .+.+.||.+..+ ..+.. ..+.+.+|||||++.+...+..+++.+|++++|||+++
T Consensus 11 v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 90 (170)
T 1r2q_A 11 LLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITN 90 (170)
T ss_dssp EECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCC
Confidence 5678999999999987 344567777554 33444 46889999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 150 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 150 (169)
+.++..+..|+..+.+.. .++.|+++|+||+|+.+. ...++..... ...+++++++||++|.|++++|+++.
T Consensus 91 ~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi~~l~~~i~ 164 (170)
T 1r2q_A 91 EESFARAKNWVKELQRQA-SPNIVIALSGNKADLANKRAVDFQEAQSYA-----DDNSLLFMETSAKTSMNVNEIFMAIA 164 (170)
T ss_dssp HHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 999999999998886532 257999999999998642 2223332211 22346799999999999999999998
Q ss_pred HHHH
Q 030931 151 STLK 154 (169)
Q Consensus 151 ~~~~ 154 (169)
+.+.
T Consensus 165 ~~~~ 168 (170)
T 1r2q_A 165 KKLP 168 (170)
T ss_dssp HTSC
T ss_pred HHHh
Confidence 7653
No 58
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.95 E-value=7.5e-29 Score=167.41 Aligned_cols=148 Identities=20% Similarity=0.216 Sum_probs=110.3
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEE--EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
+++.+|+|||||++++ ...+.||.+..+. .+.. ..+.+.+|||||++.+..++..+++.+|++++|||+++
T Consensus 11 v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 90 (170)
T 1z08_A 11 LLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITD 90 (170)
T ss_dssp EECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTC
T ss_pred EECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcC
Confidence 5678999999999876 4566788886554 3443 45789999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 150 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 150 (169)
..+++.+..|+..+.... ..+.|+++|+||+|+.+. ...++..... ...+++++++||++|.|++++|+++.
T Consensus 91 ~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~ 164 (170)
T 1z08_A 91 EDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAESYA-----ESVGAKHYHTSAKQNKGIEELFLDLC 164 (170)
T ss_dssp HHHHHHHHHHHHHHHHHH-GGGSEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccccccccCHHHHHHHH-----HHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 999999999988764422 247899999999998652 2333332221 22346799999999999999999999
Q ss_pred HHHHh
Q 030931 151 STLKE 155 (169)
Q Consensus 151 ~~~~~ 155 (169)
+.+.+
T Consensus 165 ~~~~~ 169 (170)
T 1z08_A 165 KRMIE 169 (170)
T ss_dssp HHHHC
T ss_pred HHHhh
Confidence 88764
No 59
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.95 E-value=5.7e-29 Score=167.89 Aligned_cols=149 Identities=26% Similarity=0.360 Sum_probs=112.2
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEEC--CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
+++.+|+|||||++++ ...+.||.+.++ ..+..+ .+.+.+|||||++.+..++..+++.+|++++|||+++
T Consensus 8 v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 87 (170)
T 1g16_A 8 LIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITD 87 (170)
T ss_dssp EEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTC
T ss_pred EECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCC
Confidence 5678999999999976 456677777444 344443 5789999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM-TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS 151 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (169)
+.+++.+..|+..+.... ..+.|+++|+||+|+.+.. ..++... +. ...+++++++||++|.|++++|+++.+
T Consensus 88 ~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 161 (170)
T 1g16_A 88 ERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEA-LA----KELGIPFIESSAKNDDNVNEIFFTLAK 161 (170)
T ss_dssp HHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTCCSCHHHHHH-HH----HHHTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCCcCccCHHHHHH-HH----HHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 999999999988876532 2478999999999995432 2222221 11 122356999999999999999999999
Q ss_pred HHHhh
Q 030931 152 TLKEM 156 (169)
Q Consensus 152 ~~~~~ 156 (169)
.+.++
T Consensus 162 ~~~~~ 166 (170)
T 1g16_A 162 LIQEK 166 (170)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 88765
No 60
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=1.7e-28 Score=169.35 Aligned_cols=149 Identities=16% Similarity=0.162 Sum_probs=118.4
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEEE--EEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK--VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
+++.+++|||||++++ ...+.||.+.++.. +.. ..+.+.+|||||++++...+..+++.++++++|||+++
T Consensus 28 vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~ 107 (192)
T 2fg5_A 28 LLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITK 107 (192)
T ss_dssp EEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTC
T ss_pred EECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCC
Confidence 5678999999999987 34667888865543 333 56899999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC--CCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG--AMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 150 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 150 (169)
+.+++.+..|+..+.... ..+.|+++|+||+|+.+ ....++..+.. ...+++++++||++|.|++++|+++.
T Consensus 108 ~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~ 181 (192)
T 2fg5_A 108 QDSFYTLKKWVKELKEHG-PENIVMAIAGNKCDLSDIREVPLKDAKEYA-----ESIGAIVVETSAKNAINIEELFQGIS 181 (192)
T ss_dssp THHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HTTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEeCCCCcCHHHHHHHHH
Confidence 999999999988876532 35799999999999864 22333333322 23456899999999999999999999
Q ss_pred HHHHhh
Q 030931 151 STLKEM 156 (169)
Q Consensus 151 ~~~~~~ 156 (169)
+.+.+.
T Consensus 182 ~~i~~~ 187 (192)
T 2fg5_A 182 RQIPPL 187 (192)
T ss_dssp HTCC--
T ss_pred HHHHhh
Confidence 877543
No 61
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=2.3e-28 Score=168.76 Aligned_cols=147 Identities=14% Similarity=0.127 Sum_probs=114.2
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEE-EEEEC--CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE-KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR 73 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 73 (169)
+++.+++|||||+++| ...+.||.+..+. .+... .+.+++|||||++++..++..+++.+|++++|||++++
T Consensus 23 v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 102 (194)
T 2atx_A 23 VVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNP 102 (194)
T ss_dssp EEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCH
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCH
Confidence 5678999999999976 4566778775542 34443 48899999999999999999999999999999999999
Q ss_pred hhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCC--------------CCHhHHHhhhCCCCCCCcee-EEEEeeec
Q 030931 74 ERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGA--------------MTPMEVCEGLGLFDLKNRKW-HIQGTCAL 137 (169)
Q Consensus 74 ~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 137 (169)
++|..+. .|+..+.+.. ++.|+++|+||+|+.+. ...++..... ...+. +++++||+
T Consensus 103 ~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~~Sa~ 175 (194)
T 2atx_A 103 ASFQNVKEEWVPELKEYA--PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLA-----KEIGACCYVECSAL 175 (194)
T ss_dssp HHHHHHHHTHHHHHHHHS--TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHH-----HHHTCSCEEECCTT
T ss_pred HHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHH-----HHcCCcEEEEeeCC
Confidence 9999987 7887775532 47999999999999653 1111111100 11222 69999999
Q ss_pred cCCCHHHHHHHHHHHHHh
Q 030931 138 KGDGLYEGLDWLASTLKE 155 (169)
Q Consensus 138 ~~~gi~~~~~~l~~~~~~ 155 (169)
+|.|++++|+++.+.+..
T Consensus 176 ~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 176 TQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp TCTTHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999988753
No 62
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.95 E-value=2.8e-28 Score=169.80 Aligned_cols=149 Identities=24% Similarity=0.329 Sum_probs=118.3
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEEC--CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
|++.+|+|||||++++ ...+.||++.++ ..+..+ .+.+.+|||||++++...+..+++.+|++|+|||+++
T Consensus 13 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~ 92 (206)
T 2bcg_Y 13 LIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTD 92 (206)
T ss_dssp EEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcC
Confidence 5678999999999976 445667777544 345554 4689999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 150 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 150 (169)
+.++..+..|+..+.... ..+.|+++|+||+|+.+.. ..++..... ...+++++++||++|.|++++|+++.
T Consensus 93 ~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi~~l~~~l~ 166 (206)
T 2bcg_Y 93 QESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKEFA-----DANKMPFLETSALDSTNVEDAFLTMA 166 (206)
T ss_dssp HHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCCEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 999999999988875532 2479999999999997532 222222211 12345699999999999999999999
Q ss_pred HHHHhh
Q 030931 151 STLKEM 156 (169)
Q Consensus 151 ~~~~~~ 156 (169)
+.+.+.
T Consensus 167 ~~i~~~ 172 (206)
T 2bcg_Y 167 RQIKES 172 (206)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988765
No 63
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=2.6e-29 Score=176.04 Aligned_cols=151 Identities=15% Similarity=0.032 Sum_probs=111.6
Q ss_pred ccccCCCCCceeeeecee------eeeeeeeEE--EEEEEEC--CEEEEEEEcCCCCC-chhhHHhhccCCCEEEEEEEC
Q 030931 2 LRVKQPYCTSCTLVKFYL------LFLLLVRFN--VEKVQYK--NVIFTVWDVGGQEK-LRPLWRHYFNNTDGLIYVVDS 70 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~------~~~~t~~~~--~~~~~~~--~~~~~i~D~~G~~~-~~~~~~~~~~~~~~ii~v~d~ 70 (169)
|++.+++|||||+++|.. ...++.+.+ ...+... .+.+.+|||+|++. +..+...+++.++++|+|||+
T Consensus 42 lvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydv 121 (211)
T 2g3y_A 42 LIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSI 121 (211)
T ss_dssp EECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEET
T ss_pred EECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEEC
Confidence 678999999999999842 222445533 2334443 46788999999987 566777889999999999999
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHH
Q 030931 71 LDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDW 148 (169)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 148 (169)
+++.+|+.+..|+..+.+.....+.|+++|+||+|+.+. ...++.. .+ ....++++++|||++|+||+++|++
T Consensus 122 t~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~-~~----a~~~~~~~~e~SAk~g~~v~elf~~ 196 (211)
T 2g3y_A 122 TDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGR-AC----AVVFDCKFIETSAAVQHNVKELFEG 196 (211)
T ss_dssp TCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHH-HH----HHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHH-HH----HHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 999999999999888765433357999999999999642 2222211 11 1123457999999999999999999
Q ss_pred HHHHHHhhh
Q 030931 149 LASTLKEMR 157 (169)
Q Consensus 149 l~~~~~~~~ 157 (169)
+++.+...+
T Consensus 197 l~~~i~~~~ 205 (211)
T 2g3y_A 197 IVRQVRLRR 205 (211)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhc
Confidence 999886544
No 64
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.95 E-value=3.8e-29 Score=168.78 Aligned_cols=147 Identities=18% Similarity=0.156 Sum_probs=115.8
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEE--EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
+++.+|+|||||++++ .+.+.||.+..+. .+.. ..+.+.+|||||++.+...+..+++.+|++++|||+++
T Consensus 11 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~ 90 (170)
T 1z0j_A 11 LLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITK 90 (170)
T ss_dssp EECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTC
T ss_pred EECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcC
Confidence 5678999999999976 3455677775543 3444 35889999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 150 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 150 (169)
+.++..+..|+..+... ..++.|+++|+||+|+.+.. ..++..... ...+++++++||++|.|++++|+++.
T Consensus 91 ~~s~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~l~~~i~ 164 (170)
T 1z0j_A 91 EETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDYA-----DSIHAIFVETSAKNAININELFIEIS 164 (170)
T ss_dssp HHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-CCCCCcEEEEEECCccccccccCHHHHHHHH-----HHcCCEEEEEeCCCCcCHHHHHHHHH
Confidence 99999999998887653 23579999999999996532 222222211 22346799999999999999999998
Q ss_pred HHHH
Q 030931 151 STLK 154 (169)
Q Consensus 151 ~~~~ 154 (169)
+.+.
T Consensus 165 ~~i~ 168 (170)
T 1z0j_A 165 RRIP 168 (170)
T ss_dssp HHCC
T ss_pred HHHh
Confidence 8653
No 65
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.95 E-value=4.7e-29 Score=167.98 Aligned_cols=147 Identities=16% Similarity=0.219 Sum_probs=117.0
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEEC--CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
+++.+|+|||||++++ ...+.||.+.++ ..+... .+.+.+|||||++.+..++..+++.+|++++|||+++
T Consensus 10 v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 89 (168)
T 1z2a_A 10 VVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTD 89 (168)
T ss_dssp EECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTC
T ss_pred EECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcC
Confidence 5678999999999976 456677777443 344443 5789999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 150 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 150 (169)
+.+++.+..|+..+.... .+.|+++|+||+|+.+. ...++..... ...+++++++||++|.|++++|+++.
T Consensus 90 ~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~l~~~l~ 162 (168)
T 1z2a_A 90 RESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLA-----KRLKLRFYRTSVKEDLNVSEVFKYLA 162 (168)
T ss_dssp HHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHH-----HHHTCEEEECBTTTTBSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHH-----HHcCCeEEEEecCCCCCHHHHHHHHH
Confidence 999999999988886533 57899999999998642 2233332211 22345799999999999999999999
Q ss_pred HHHHh
Q 030931 151 STLKE 155 (169)
Q Consensus 151 ~~~~~ 155 (169)
+.+.+
T Consensus 163 ~~~~~ 167 (168)
T 1z2a_A 163 EKHLQ 167 (168)
T ss_dssp HHHHC
T ss_pred HHHhh
Confidence 88764
No 66
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.95 E-value=2.5e-28 Score=165.99 Aligned_cols=148 Identities=18% Similarity=0.262 Sum_probs=115.9
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
+++.+++|||||++++ ...+.+|.+..+ ..+.. ..+.+.+|||||++.+...+..+++.+|++++|||+++
T Consensus 20 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 99 (179)
T 1z0f_A 20 IIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITR 99 (179)
T ss_dssp EECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcC
Confidence 5678999999999986 344566766443 33444 35789999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 150 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 150 (169)
..+++.+..|+..+.... ..+.|+++|+||+|+.+. ...++..+.. ...+++++++||++|.|++++|+++.
T Consensus 100 ~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~ 173 (179)
T 1z0f_A 100 RSTYNHLSSWLTDARNLT-NPNTVIILIGNKADLEAQRDVTYEEAKQFA-----EENGLLFLEASAKTGENVEDAFLEAA 173 (179)
T ss_dssp HHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 999999999988775532 247899999999999642 2233332221 22346799999999999999999999
Q ss_pred HHHHh
Q 030931 151 STLKE 155 (169)
Q Consensus 151 ~~~~~ 155 (169)
+.+.+
T Consensus 174 ~~i~~ 178 (179)
T 1z0f_A 174 KKIYQ 178 (179)
T ss_dssp HHHC-
T ss_pred HHHhh
Confidence 87754
No 67
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.95 E-value=1.8e-29 Score=169.70 Aligned_cols=149 Identities=14% Similarity=0.133 Sum_probs=115.7
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEE-EEEEEC--CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV-EKVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR 73 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~-~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 73 (169)
+++.+++|||||++++ ...+.||.+... ..+... .+.+.+|||||++.+..++..+++.++++++|||++++
T Consensus 8 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~ 87 (167)
T 1kao_A 8 VLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQ 87 (167)
T ss_dssp EECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCH
T ss_pred EECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCH
Confidence 5678999999999976 344556665432 334443 46799999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931 74 ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS 151 (169)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (169)
.+++.+..|+..+.+.....+.|+++|+||+|+.+.. ...+..... ...+++++++||++|.|++++|+++.+
T Consensus 88 ~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 162 (167)
T 1kao_A 88 QSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALA-----EEWGCPFMETSAKSKTMVDELFAEIVR 162 (167)
T ss_dssp HHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTSCEEEECTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHH-----HHhCCCEEEecCCCCcCHHHHHHHHHH
Confidence 9999999998888765444689999999999985432 222221111 122346999999999999999999998
Q ss_pred HHHh
Q 030931 152 TLKE 155 (169)
Q Consensus 152 ~~~~ 155 (169)
.+.+
T Consensus 163 ~~~~ 166 (167)
T 1kao_A 163 QMNY 166 (167)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 7753
No 68
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.95 E-value=3.6e-28 Score=163.00 Aligned_cols=149 Identities=13% Similarity=0.149 Sum_probs=115.6
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEE-EEEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV-EKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR 73 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~-~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 73 (169)
+++.+|+|||||++++ ...+.+|.+..+ ..+.. ..+.+.+|||||++.+...+..+++.+|++++|||+++.
T Consensus 8 v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~ 87 (166)
T 2ce2_X 8 VVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNT 87 (166)
T ss_dssp EEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCH
T ss_pred EECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCH
Confidence 5678999999999976 344556665443 23343 357789999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHH
Q 030931 74 ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM-TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAST 152 (169)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 152 (169)
.++..+..|+..+.......+.|+++|+||+|+.+.. ..++... +. ...+++++++||++|.|++++|+++.+.
T Consensus 88 ~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 162 (166)
T 2ce2_X 88 KSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQD-LA----RSYGIPYIETSAKTRQGVEDAFYTLVRE 162 (166)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHH-HH----HHHTCCEEEECTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHH-HH----HHcCCeEEEecCCCCCCHHHHHHHHHHH
Confidence 9999999998887664433579999999999987532 2222222 11 1223569999999999999999999988
Q ss_pred HHh
Q 030931 153 LKE 155 (169)
Q Consensus 153 ~~~ 155 (169)
+.+
T Consensus 163 ~~~ 165 (166)
T 2ce2_X 163 IRQ 165 (166)
T ss_dssp HHT
T ss_pred HHh
Confidence 754
No 69
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.8e-28 Score=171.99 Aligned_cols=151 Identities=16% Similarity=0.212 Sum_probs=112.4
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEECC--EEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
|++.+++|||||+++| ...+.||++..+ ..+..++ +.+.+|||||++++..++..+++.++++|+|||+++
T Consensus 18 v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~ 97 (223)
T 3cpj_B 18 LIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISK 97 (223)
T ss_dssp EESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CC
T ss_pred EECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCC
Confidence 5678999999999986 345667777443 4455554 799999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 150 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 150 (169)
+.+++.+..|+..+.... ..+.|+++|+||+|+.+. ...++..... ...+++++++||++|.|++++|+++.
T Consensus 98 ~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~ 171 (223)
T 3cpj_B 98 SSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESKTFA-----QENQLLFTETSALNSENVDKAFEELI 171 (223)
T ss_dssp HHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCCC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 999999999998886532 357899999999998642 2323322211 22346799999999999999999999
Q ss_pred HHHHhhhc
Q 030931 151 STLKEMRA 158 (169)
Q Consensus 151 ~~~~~~~~ 158 (169)
+.+.+...
T Consensus 172 ~~i~~~~~ 179 (223)
T 3cpj_B 172 NTIYQKVS 179 (223)
T ss_dssp HHHTTCC-
T ss_pred HHHHHHhh
Confidence 98887543
No 70
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.95 E-value=2.1e-28 Score=170.38 Aligned_cols=152 Identities=13% Similarity=0.121 Sum_probs=118.4
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEEE--EEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK--VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
+++.+|+|||||++++ ...+.||.+.++.. +.. ..+.+.+|||||++.+..++..+++.+|++|+|||+++
T Consensus 13 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 92 (207)
T 1vg8_A 13 ILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTA 92 (207)
T ss_dssp EECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTC
T ss_pred EECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCC
Confidence 5678999999999976 45667777755543 333 35899999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCC---CCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDP---FMLNSVILVFANKQDMKGAM-TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDW 148 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~---~~~~~piivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 148 (169)
+.++..+..|+..+.... ...+.|+++|+||+|+.+.. ..++...... ...+++++++||++|.|++++|++
T Consensus 93 ~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~g~gi~~l~~~ 168 (207)
T 1vg8_A 93 PNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCY----SKNNIPYFETSAKEAINVEQAFQT 168 (207)
T ss_dssp HHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHH----HTTSCCEEECBTTTTBSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHH----hcCCceEEEEeCCCCCCHHHHHHH
Confidence 999999988888775522 12478999999999997432 2222222211 123456999999999999999999
Q ss_pred HHHHHHhhh
Q 030931 149 LASTLKEMR 157 (169)
Q Consensus 149 l~~~~~~~~ 157 (169)
+.+.+.+..
T Consensus 169 l~~~~~~~~ 177 (207)
T 1vg8_A 169 IARNALKQE 177 (207)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999887754
No 71
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.95 E-value=1.4e-28 Score=172.79 Aligned_cols=151 Identities=20% Similarity=0.166 Sum_probs=118.9
Q ss_pred ccccCCCCCceeeeece-----eeeeeeeeEEEEEEEE----C-CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931 2 LRVKQPYCTSCTLVKFY-----LLFLLLVRFNVEKVQY----K-NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL 71 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~-----~~~~~t~~~~~~~~~~----~-~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~ 71 (169)
+++.+++|||||++++. ..+.+|.+........ + .+.+.+|||||++.+..++..+++.+|++|+|||++
T Consensus 16 vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~ 95 (218)
T 4djt_A 16 LIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVT 95 (218)
T ss_dssp EECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETT
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCC
Confidence 57799999999999873 4556777766555443 2 288999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHH
Q 030931 72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149 (169)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 149 (169)
+..++..+..|+..+.... ..+.|+++|+||+|+.+.. ...+.. .+ ....+++++++||++|.|++++|+++
T Consensus 96 ~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~-~~----~~~~~~~~~~~Sa~~g~gv~~l~~~l 169 (218)
T 4djt_A 96 SRITCQNLARWVKEFQAVV-GNEAPIVVCANKIDIKNRQKISKKLVM-EV----LKGKNYEYFEISAKTAHNFGLPFLHL 169 (218)
T ss_dssp CHHHHHTHHHHHHHHHHHH-CSSSCEEEEEECTTCC----CCHHHHH-HH----TTTCCCEEEEEBTTTTBTTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHH-HH----HHHcCCcEEEEecCCCCCHHHHHHHH
Confidence 9999999999988875532 2358999999999997532 222222 22 23456789999999999999999999
Q ss_pred HHHHHhhhc
Q 030931 150 ASTLKEMRA 158 (169)
Q Consensus 150 ~~~~~~~~~ 158 (169)
.+.+.+...
T Consensus 170 ~~~~~~~~~ 178 (218)
T 4djt_A 170 ARIFTGRPD 178 (218)
T ss_dssp HHHHHCCTT
T ss_pred HHHHhcccc
Confidence 999887653
No 72
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.95 E-value=1.6e-29 Score=174.00 Aligned_cols=149 Identities=17% Similarity=0.240 Sum_probs=114.0
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEEC--CEEEEEEEcCCCCCch-hhHHhhccCCCEEEEEEECC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQYK--NVIFTVWDVGGQEKLR-PLWRHYFNNTDGLIYVVDSL 71 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~-~~~~~~~~~~~~ii~v~d~~ 71 (169)
+++.+++|||||+++| ...+.||++.++ ..+..+ .+.+.+|||||++++. .++..+++.+|++|+|||++
T Consensus 25 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~ 104 (189)
T 1z06_A 25 VIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMT 104 (189)
T ss_dssp EECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETT
T ss_pred EECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECc
Confidence 5678999999999986 345667777443 445554 4789999999999988 88999999999999999999
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccC---CCHHHHH
Q 030931 72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKG---DGLYEGL 146 (169)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~---~gi~~~~ 146 (169)
+..++..+..|+..+.+.....+.|+++|+||+|+.+.. ..++... +. ...+++++++||+++ .|++++|
T Consensus 105 ~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~~----~~~~~~~~~~Sa~~~~~~~~i~~l~ 179 (189)
T 1z06_A 105 NMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQK-FA----DTHSMPLFETSAKNPNDNDHVEAIF 179 (189)
T ss_dssp CHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHH-HH----HHTTCCEEECCSSSGGGGSCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHH-HH----HHcCCEEEEEeCCcCCcccCHHHHH
Confidence 999999999999888765444689999999999996432 2222221 11 123356999999999 9999999
Q ss_pred HHHHHHHHh
Q 030931 147 DWLASTLKE 155 (169)
Q Consensus 147 ~~l~~~~~~ 155 (169)
+++++.+.+
T Consensus 180 ~~l~~~i~~ 188 (189)
T 1z06_A 180 MTLAHKLKS 188 (189)
T ss_dssp HHHC-----
T ss_pred HHHHHHHhh
Confidence 999887643
No 73
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.95 E-value=7.7e-28 Score=163.82 Aligned_cols=148 Identities=8% Similarity=0.056 Sum_probs=109.4
Q ss_pred ccccCCCCCceeeeece----eeeeeeeeEEE-EEEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChh
Q 030931 2 LRVKQPYCTSCTLVKFY----LLFLLLVRFNV-EKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE 74 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~----~~~~~t~~~~~-~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 74 (169)
+++.+++|||||+++|. ..+.||.+..+ ..+.. ..+.+++|||||+++ ..+++++|++++|||+++++
T Consensus 12 ~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~ 86 (178)
T 2iwr_A 12 VLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIFVFSLEDEN 86 (178)
T ss_dssp EECCGGGCHHHHHHHHHHSCCCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEEEEETTCHH
T ss_pred EECCCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEEEEECcCHH
Confidence 57789999999999872 22567777543 33444 357899999999986 45788999999999999999
Q ss_pred hHHHHHHHHHHHhc--CCCCCCCeEEEEEeCCCCCC----CCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHH
Q 030931 75 RIGKAKQEFQAIIK--DPFMLNSVILVFANKQDMKG----AMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDW 148 (169)
Q Consensus 75 ~~~~~~~~~~~~~~--~~~~~~~piivv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 148 (169)
+++.+..|+..+.. ....++.|+++|+||+|+.+ ....++...... ...+++++++||++|.|++++|++
T Consensus 87 s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~~~~~i~~lf~~ 162 (178)
T 2iwr_A 87 SFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXA----DMKRCSYYETXATYGLNVDRVFQE 162 (178)
T ss_dssp HHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHH----HHSSEEEEEEBTTTTBTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHH----hhcCCeEEEEeccccCCHHHHHHH
Confidence 99999986544432 22235799999999999842 223333322111 112467999999999999999999
Q ss_pred HHHHHHhhhc
Q 030931 149 LASTLKEMRA 158 (169)
Q Consensus 149 l~~~~~~~~~ 158 (169)
+.+.+.+...
T Consensus 163 l~~~~~~~~~ 172 (178)
T 2iwr_A 163 VAQKVVTLRK 172 (178)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9998877643
No 74
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.95 E-value=3.3e-28 Score=167.93 Aligned_cols=149 Identities=16% Similarity=0.196 Sum_probs=113.6
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEEC--CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
+++.+++|||||++++ ...+.||.+.++ ..+..+ .+.+.+|||||++++..++..+++.+|++|+|||+++
T Consensus 31 vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~ 110 (192)
T 2il1_A 31 IIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITK 110 (192)
T ss_dssp EECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcC
Confidence 5678999999999987 344566766443 445554 4789999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 150 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 150 (169)
..+++.+..|+..+... ...+.|+++|+||+|+.+. ...++...... ...+++++++||++|.|++++|+++.
T Consensus 111 ~~s~~~~~~~~~~i~~~-~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~----~~~~~~~~~~SA~~g~gi~~l~~~l~ 185 (192)
T 2il1_A 111 KETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREITRQQGEKFAQ----QITGMRFCEASAKDNFNVDEIFLKLV 185 (192)
T ss_dssp HHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH----TSTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHH----hcCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 99999998888776442 2247999999999998643 22233222111 11246799999999999999999999
Q ss_pred HHHHh
Q 030931 151 STLKE 155 (169)
Q Consensus 151 ~~~~~ 155 (169)
+.+.+
T Consensus 186 ~~i~~ 190 (192)
T 2il1_A 186 DDILK 190 (192)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98765
No 75
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.95 E-value=4.2e-28 Score=168.26 Aligned_cols=149 Identities=14% Similarity=0.093 Sum_probs=112.9
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEE-EEEEC--CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE-KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR 73 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 73 (169)
+++.+|+|||||+++| ...+.||.+..+. .+... .+.+++|||||++++..++..+++++|++++|||++++
T Consensus 25 ~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~ 104 (201)
T 2q3h_A 25 LVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSP 104 (201)
T ss_dssp EECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCH
T ss_pred EECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCH
Confidence 5678999999999976 4566777775543 34444 46788999999999999999999999999999999999
Q ss_pred hhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCC--------------CCHhHHHhhhCCCCCCCcee-EEEEeeec
Q 030931 74 ERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGA--------------MTPMEVCEGLGLFDLKNRKW-HIQGTCAL 137 (169)
Q Consensus 74 ~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 137 (169)
.++..+. .|+..+.... ++.|+++|+||+|+.+. ...++..... ...+. +++++||+
T Consensus 105 ~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~~Sa~ 177 (201)
T 2q3h_A 105 SSFQNVSEKWVPEIRCHC--PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLA-----EEIKAASYIECSAL 177 (201)
T ss_dssp HHHHHHHHTHHHHHHHHC--SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHH-----HHHTCSEEEECCTT
T ss_pred HHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHH-----HhcCCcEEEEEecC
Confidence 9999987 6887775532 48999999999998642 1111111110 11223 79999999
Q ss_pred cCCCHHHHHHHHHHHHHhhh
Q 030931 138 KGDGLYEGLDWLASTLKEMR 157 (169)
Q Consensus 138 ~~~gi~~~~~~l~~~~~~~~ 157 (169)
+|.|++++|+++.+.+.+.+
T Consensus 178 ~g~gi~~l~~~l~~~~~~~~ 197 (201)
T 2q3h_A 178 TQKNLKEVFDAAIVAGIQYS 197 (201)
T ss_dssp TCTTHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhccc
Confidence 99999999999999887765
No 76
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=2.9e-28 Score=168.61 Aligned_cols=150 Identities=15% Similarity=0.121 Sum_probs=118.2
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEEE-EEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK-VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR 73 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~-~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 73 (169)
+++.+|+|||||++++ ...+.||.+..+.. +.. ..+.+.+|||||++. ...+..+++.++++++|||++++
T Consensus 33 v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~ 111 (196)
T 2atv_A 33 IFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDR 111 (196)
T ss_dssp EECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCH
T ss_pred EECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCH
Confidence 5678999999999976 44567777765533 344 458899999999998 78889999999999999999999
Q ss_pred hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCC-CHHHHHHHHH
Q 030931 74 ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGD-GLYEGLDWLA 150 (169)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-gi~~~~~~l~ 150 (169)
++++.+..|+..+.......+.|+++|+||+|+.+. ...++..... ...+++++++||++|. |++++|++++
T Consensus 112 ~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~g~~gi~~l~~~l~ 186 (196)
T 2atv_A 112 GSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLA-----TELACAFYECSACTGEGNITEIFYELC 186 (196)
T ss_dssp HHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTSEEEECCTTTCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHH-----HHhCCeEEEECCCcCCcCHHHHHHHHH
Confidence 999999998888766433458999999999998653 2222222211 1234679999999999 9999999999
Q ss_pred HHHHhhh
Q 030931 151 STLKEMR 157 (169)
Q Consensus 151 ~~~~~~~ 157 (169)
+.+.+.+
T Consensus 187 ~~i~~~~ 193 (196)
T 2atv_A 187 REVRRRR 193 (196)
T ss_dssp HHHHHHH
T ss_pred HHHHhhc
Confidence 9887654
No 77
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.95 E-value=9.2e-29 Score=168.57 Aligned_cols=152 Identities=13% Similarity=0.139 Sum_probs=106.1
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEEC---CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQYK---NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL 71 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~~---~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~ 71 (169)
+++.+|+|||||++++ ...+.||.+.++ ..+... .+.+.+|||||++.+...+..+++.+|++++|||++
T Consensus 13 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~ 92 (182)
T 1ky3_A 13 ILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVT 92 (182)
T ss_dssp EECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEEEEETT
T ss_pred EECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECC
Confidence 5678999999999976 455667776443 334433 589999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHhcCC---CCCCCeEEEEEeCCCCCCC---CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHH
Q 030931 72 DRERIGKAKQEFQAIIKDP---FMLNSVILVFANKQDMKGA---MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG 145 (169)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~---~~~~~piivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 145 (169)
++.+++.+..|+..+.... ...+.|+++|+||+|+.+. ...++...... ...+++++++||++|.|++++
T Consensus 93 ~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~l 168 (182)
T 1ky3_A 93 NASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK----SLGDIPLFLTSAKNAINVDTA 168 (182)
T ss_dssp CHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH----HTTSCCEEEEBTTTTBSHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHH----hcCCCeEEEEecCCCCCHHHH
Confidence 9999999999988776522 2357899999999998532 22233222111 123456999999999999999
Q ss_pred HHHHHHHHHhhh
Q 030931 146 LDWLASTLKEMR 157 (169)
Q Consensus 146 ~~~l~~~~~~~~ 157 (169)
|+++.+.+.+..
T Consensus 169 ~~~l~~~~~~~~ 180 (182)
T 1ky3_A 169 FEEIARSALQQN 180 (182)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999887654
No 78
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.95 E-value=1.1e-27 Score=166.03 Aligned_cols=148 Identities=19% Similarity=0.231 Sum_probs=117.3
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEE--EEEECC--------------------------------------
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE--KVQYKN-------------------------------------- 36 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~--~~~~~~-------------------------------------- 36 (169)
+++.+++|||||++++ .+.+.||.+..+. .+..++
T Consensus 12 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (208)
T 3clv_A 12 LLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNYNENLC 91 (208)
T ss_dssp EECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------CCCTTTC
T ss_pred EECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccccccCccc
Confidence 5678999999999976 4566778775443 344333
Q ss_pred -EEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC-CCCHhH
Q 030931 37 -VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG-AMTPME 114 (169)
Q Consensus 37 -~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~-~~~~~~ 114 (169)
+.+.+|||||++.+...+..+++.+|++++|||++++.++..+..|+..+.... +.|+++|+||+|+.. ....++
T Consensus 92 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~---~~piilv~NK~D~~~~~~~~~~ 168 (208)
T 3clv_A 92 NIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS---NYIIILVANKIDKNKFQVDILE 168 (208)
T ss_dssp EEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS---CCEEEEEEECTTCC-CCSCHHH
T ss_pred eeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC---CCcEEEEEECCCcccccCCHHH
Confidence 899999999999999999999999999999999999999999999998886533 389999999999432 233344
Q ss_pred HHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhhh
Q 030931 115 VCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR 157 (169)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 157 (169)
+.... ...+++++++||++|.|++++|+++.+.+.++.
T Consensus 169 ~~~~~-----~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 206 (208)
T 3clv_A 169 VQKYA-----QDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI 206 (208)
T ss_dssp HHHHH-----HHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----HHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 33322 223467999999999999999999999887653
No 79
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.95 E-value=2.1e-28 Score=169.79 Aligned_cols=148 Identities=18% Similarity=0.254 Sum_probs=107.4
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
+++.+++|||||++++ ...+.||.+.++ ..+.. ..+.+++|||||++.+...+..+++.+|++|+|||+++
T Consensus 33 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~ 112 (199)
T 2p5s_A 33 LAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTC 112 (199)
T ss_dssp EESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTC
T ss_pred EECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCC
Confidence 5678999999999986 345667777543 33444 35789999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC--------CCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG--------AMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 144 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 144 (169)
..+++.+..|+..+.... ..+.|+++|+||+|+.+ ....++... + ....+++++++||++|.|+++
T Consensus 113 ~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~-~----~~~~~~~~~~~SA~~g~gv~e 186 (199)
T 2p5s_A 113 EKSFLNIREWVDMIEDAA-HETVPIMLVGNKADIRDTAATEGQKCVPGHFGEK-L----AMTYGALFCETSAKDGSNIVE 186 (199)
T ss_dssp HHHHHTHHHHHHHHHHHC----CCEEEEEECGGGHHHHHHTTCCCCCHHHHHH-H----HHHHTCEEEECCTTTCTTHHH
T ss_pred hHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccccccccccCHHHHHH-H----HHHcCCeEEEeeCCCCCCHHH
Confidence 999999999988775422 24789999999999852 112222111 1 123346799999999999999
Q ss_pred HHHHHHHHHHh
Q 030931 145 GLDWLASTLKE 155 (169)
Q Consensus 145 ~~~~l~~~~~~ 155 (169)
+|+++++.+.+
T Consensus 187 l~~~l~~~i~~ 197 (199)
T 2p5s_A 187 AVLHLAREVKK 197 (199)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHHh
Confidence 99999998754
No 80
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.95 E-value=1.7e-29 Score=173.83 Aligned_cols=148 Identities=14% Similarity=0.062 Sum_probs=111.9
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEE-EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR 73 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 73 (169)
+++.+|+|||||+++| ...+.||++..+. .+.. ..+.+++|||+|++++..+ ..+++.++++++|||++++
T Consensus 26 vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~~ 104 (187)
T 3c5c_A 26 ILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSR 104 (187)
T ss_dssp EECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEEEEEETTCH
T ss_pred EECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEEEEEECCCH
Confidence 5778999999999976 4567788886543 2333 4688999999999988875 6689999999999999999
Q ss_pred hhHHHHHHHHHHHhcCCC--CCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeee-ccCCCHHHHHHH
Q 030931 74 ERIGKAKQEFQAIIKDPF--MLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCA-LKGDGLYEGLDW 148 (169)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~--~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~gi~~~~~~ 148 (169)
++|+.+..|+..+..... ..+.|+++|+||+|+.+. ...++..... ...+++++++|| ++|.|++++|++
T Consensus 105 ~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~e~Sa~~~g~gv~~lf~~ 179 (187)
T 3c5c_A 105 QSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALA-----GRFGCLFFEVSACLDFEHVQHVFHE 179 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHH-----HHHTCEEEECCSSSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHH-----HHcCCcEEEEeecCccccHHHHHHH
Confidence 999999999888865311 247899999999998642 2323222211 223457999999 899999999999
Q ss_pred HHHHHHh
Q 030931 149 LASTLKE 155 (169)
Q Consensus 149 l~~~~~~ 155 (169)
+++.+.+
T Consensus 180 l~~~i~~ 186 (187)
T 3c5c_A 180 AVREARR 186 (187)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 9988754
No 81
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.95 E-value=3.4e-28 Score=166.69 Aligned_cols=147 Identities=13% Similarity=0.104 Sum_probs=114.0
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEE-EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR 73 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 73 (169)
+++.+|+|||||+++| ...+.||.+..+. .+.. ..+.+.+|||||++.+..++..+++.++++++|||++++
T Consensus 12 v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~ 91 (184)
T 1m7b_A 12 VVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRP 91 (184)
T ss_dssp EEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCH
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCH
Confidence 5779999999999976 4556788876553 2333 468899999999999999999999999999999999999
Q ss_pred hhHHHH-HHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--------------CCHhHHHhhhCCCCCCCce-eEEEEeeec
Q 030931 74 ERIGKA-KQEFQAIIKDPFMLNSVILVFANKQDMKGA--------------MTPMEVCEGLGLFDLKNRK-WHIQGTCAL 137 (169)
Q Consensus 74 ~~~~~~-~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~ 137 (169)
.++..+ ..|+..+.+.. ++.|+++|+||+|+.+. .+.++..... ...+ ++|+++||+
T Consensus 92 ~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~e~Sa~ 164 (184)
T 1m7b_A 92 ETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMA-----KQIGAATYIECSAL 164 (184)
T ss_dssp HHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHH-----HHHTCSEEEECBTT
T ss_pred HHHHHHHHHHHHHHHHHC--CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHH-----HHcCCcEEEEeeec
Confidence 999998 67877765432 57999999999999632 2222211111 1112 479999999
Q ss_pred -cCCCHHHHHHHHHHHHHh
Q 030931 138 -KGDGLYEGLDWLASTLKE 155 (169)
Q Consensus 138 -~~~gi~~~~~~l~~~~~~ 155 (169)
++.|++++|+++.+.+.+
T Consensus 165 ~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 165 QSENSVRDIFHVATLACVN 183 (184)
T ss_dssp TBHHHHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHHHHHhc
Confidence 689999999999988764
No 82
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.95 E-value=1.6e-28 Score=171.78 Aligned_cols=150 Identities=14% Similarity=0.118 Sum_probs=114.3
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEE-EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR 73 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 73 (169)
+++.+|+|||||+++| ...+.||.+..+. .+.. ..+.+++|||||++++..++..+++.+|++|+|||++++
T Consensus 14 i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~ 93 (212)
T 2j0v_A 14 TVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISK 93 (212)
T ss_dssp EEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCH
T ss_pred EECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCH
Confidence 5778999999999976 4566778875543 2333 458999999999999999999999999999999999999
Q ss_pred hhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCC----------CHhHHHhhhCCCCCCCce-eEEEEeeeccCCC
Q 030931 74 ERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAM----------TPMEVCEGLGLFDLKNRK-WHIQGTCALKGDG 141 (169)
Q Consensus 74 ~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g 141 (169)
.+++.+. .|+..+.... ++.|+++|+||+|+.+.. ..++..... ...+ .+++++||++|.|
T Consensus 94 ~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~~Sa~~g~g 166 (212)
T 2j0v_A 94 ASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELR-----KQIGAAAYIECSSKTQQN 166 (212)
T ss_dssp HHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHH-----HHHTCSEEEECCTTTCTT
T ss_pred HHHHHHHHHHHHHHHHhC--CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHH-----HHcCCceEEEccCCCCCC
Confidence 9999987 7887775432 479999999999986431 222211111 1122 3799999999999
Q ss_pred HHHHHHHHHHHHHhhhc
Q 030931 142 LYEGLDWLASTLKEMRA 158 (169)
Q Consensus 142 i~~~~~~l~~~~~~~~~ 158 (169)
++++|+++.+.+.+...
T Consensus 167 i~~l~~~l~~~~~~~~~ 183 (212)
T 2j0v_A 167 VKAVFDTAIKVVLQPPR 183 (212)
T ss_dssp HHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHhhhhh
Confidence 99999999998887643
No 83
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=2.8e-29 Score=169.58 Aligned_cols=150 Identities=16% Similarity=0.118 Sum_probs=114.3
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEEEE-EE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEKV-QY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR 73 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~~-~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 73 (169)
+++.+|+|||||++++ ...+.||.+..+... .. ..+.+.+|||||++.+..++..+++.+|++++|||++++
T Consensus 8 v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~ 87 (172)
T 2erx_A 8 VFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSR 87 (172)
T ss_dssp EECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCH
T ss_pred EECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCH
Confidence 5678999999999976 345677777655432 22 457899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcC-CCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931 74 ERIGKAKQEFQAIIKD-PFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 150 (169)
Q Consensus 74 ~~~~~~~~~~~~~~~~-~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 150 (169)
.+++....|+..+.+. ...++.|+++|+||+|+.+.. ...+... + ....+++++++||++|.|++++|+++.
T Consensus 88 ~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 162 (172)
T 2erx_A 88 QSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEA-L----ARTWKCAFMETSAKLNHNVKELFQELL 162 (172)
T ss_dssp HHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHH-H----HHHHTCEEEECBTTTTBSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHH-H----HHHhCCeEEEecCCCCcCHHHHHHHHH
Confidence 9999888887766542 223578999999999986432 2222211 1 122345799999999999999999999
Q ss_pred HHHHhh
Q 030931 151 STLKEM 156 (169)
Q Consensus 151 ~~~~~~ 156 (169)
+.+.++
T Consensus 163 ~~~~~~ 168 (172)
T 2erx_A 163 NLEKRR 168 (172)
T ss_dssp HTCCSS
T ss_pred HHHhhh
Confidence 866543
No 84
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=2e-28 Score=169.37 Aligned_cols=151 Identities=12% Similarity=0.102 Sum_probs=116.2
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEEEE-EE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEKV-QY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR 73 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~~-~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 73 (169)
+++.+++|||||++++ ...+.||.+..+... .. ..+.+.+|||||++.+..++..+++.+|++++|||++++
T Consensus 13 vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 92 (199)
T 2gf0_A 13 VFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSK 92 (199)
T ss_dssp EEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCH
T ss_pred EECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCH
Confidence 5678999999999986 445667777555432 22 457899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcCC-CCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931 74 ERIGKAKQEFQAIIKDP-FMLNSVILVFANKQDMKGAM-TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS 151 (169)
Q Consensus 74 ~~~~~~~~~~~~~~~~~-~~~~~piivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (169)
.+++.+..|+..+.... ...+.|+++|+||+|+.+.. ..++... + ....+++++++||++|.|++++|+++.+
T Consensus 93 ~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 167 (199)
T 2gf0_A 93 QSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQA-V----AQEWKCAFMETSAKMNYNVKELFQELLT 167 (199)
T ss_dssp HHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHH-H----HHHHTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHH-H----HHHhCCeEEEEecCCCCCHHHHHHHHHH
Confidence 99998888776654421 13478999999999997532 2222221 1 1223457999999999999999999999
Q ss_pred HHHhhh
Q 030931 152 TLKEMR 157 (169)
Q Consensus 152 ~~~~~~ 157 (169)
.+.++.
T Consensus 168 ~~~~~~ 173 (199)
T 2gf0_A 168 LETRRN 173 (199)
T ss_dssp HCSSSC
T ss_pred HHhhhh
Confidence 876654
No 85
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.95 E-value=8e-28 Score=165.43 Aligned_cols=151 Identities=13% Similarity=0.145 Sum_probs=106.8
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEE-EEEEEC--CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV-EKVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR 73 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~-~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 73 (169)
+++.+|+|||||++++ ...+.+|.+..+ ..+... .+.+.+|||||++.+..++..+++.++++++|||+++.
T Consensus 26 vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 105 (190)
T 3con_A 26 VVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNS 105 (190)
T ss_dssp EECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEEEEETTCH
T ss_pred EECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCH
Confidence 5678999999999976 344455665443 234443 47799999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC-CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHH
Q 030931 74 ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA-MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAST 152 (169)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 152 (169)
.++..+..|+..+.......+.|+++|+||+|+.+. ...++..+.. ...+++++++||++|.|++++|+++.+.
T Consensus 106 ~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 180 (190)
T 3con_A 106 KSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELA-----KSYGIPFIETSAKTRQGVEDAFYTLVRE 180 (190)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHH-----HHHTCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 999999988888765433357999999999998652 2223322221 1233469999999999999999999998
Q ss_pred HHhhh
Q 030931 153 LKEMR 157 (169)
Q Consensus 153 ~~~~~ 157 (169)
+.+.+
T Consensus 181 ~~~~~ 185 (190)
T 3con_A 181 IRQYR 185 (190)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 87754
No 86
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.95 E-value=4.1e-29 Score=169.89 Aligned_cols=148 Identities=16% Similarity=0.240 Sum_probs=115.6
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEEC--CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
+++.+|+|||||++++ ...+.||.+.++ ..+..+ .+.+.+|||||++.+...+..+++.+|++++|||+++
T Consensus 19 v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 98 (179)
T 2y8e_A 19 FLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 98 (179)
T ss_dssp EEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCC
Confidence 5678999999999976 455667777544 334444 4789999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 150 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 150 (169)
+.++..+..|+..+.... ..+.|+++|+||+|+.+.. ..++..... ...+++++++||++|.|++++|+++.
T Consensus 99 ~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~l~~~l~ 172 (179)
T 2y8e_A 99 TNSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTEEGERKA-----KELNVMFIETSAKAGYNVKQLFRRVA 172 (179)
T ss_dssp HHHHHTHHHHHHHHHHHH-TTSSEEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccCcCCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 999999999988876532 2479999999999986432 222222211 22346799999999999999999998
Q ss_pred HHHHh
Q 030931 151 STLKE 155 (169)
Q Consensus 151 ~~~~~ 155 (169)
+.+.+
T Consensus 173 ~~~~~ 177 (179)
T 2y8e_A 173 AALPG 177 (179)
T ss_dssp HTCC-
T ss_pred HHHhh
Confidence 86543
No 87
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.95 E-value=9.3e-28 Score=167.76 Aligned_cols=150 Identities=25% Similarity=0.350 Sum_probs=117.7
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEECC--EEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
+++.+++|||||++++ ...+.||++..+ ..+..++ +.+.+|||||++.+..++..+++.+|++++|||+++
T Consensus 25 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~ 104 (213)
T 3cph_A 25 LIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTD 104 (213)
T ss_dssp EECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCC
Confidence 5678999999999976 455667777443 4455555 789999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM-TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS 151 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (169)
+.+++.+..|+..+.... ..+.|+++|+||+|+.... ..++... +. ...+++++++||++|.|++++|+++.+
T Consensus 105 ~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 178 (213)
T 3cph_A 105 ERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEA-LA----KELGIPFIESSAKNDDNVNEIFFTLAK 178 (213)
T ss_dssp HHHHHTHHHHHHHHHHHT-TTCSEEEEEEECTTCSSCCSCHHHHHH-HH----HHHTCCEEECBTTTTBSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCcccccCHHHHHH-HH----HHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 999999999988876532 2478999999999995322 2222221 11 122346999999999999999999999
Q ss_pred HHHhhh
Q 030931 152 TLKEMR 157 (169)
Q Consensus 152 ~~~~~~ 157 (169)
.+.+..
T Consensus 179 ~~~~~~ 184 (213)
T 3cph_A 179 LIQEKI 184 (213)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887753
No 88
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.95 E-value=9.3e-28 Score=167.47 Aligned_cols=147 Identities=13% Similarity=0.104 Sum_probs=114.1
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEE-EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR 73 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 73 (169)
+++.+++|||||+++| ...+.||.+..+. .+.. ..+.+++|||||++.+..++..+++.++++|+|||++++
T Consensus 33 vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~ 112 (205)
T 1gwn_A 33 VVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRP 112 (205)
T ss_dssp EEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCH
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCH
Confidence 5779999999999976 4556788876553 2333 468999999999999999999999999999999999999
Q ss_pred hhHHHH-HHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--------------CCHhHHHhhhCCCCCCCce-eEEEEeeec
Q 030931 74 ERIGKA-KQEFQAIIKDPFMLNSVILVFANKQDMKGA--------------MTPMEVCEGLGLFDLKNRK-WHIQGTCAL 137 (169)
Q Consensus 74 ~~~~~~-~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~ 137 (169)
.+|..+ ..|+..+.+.. ++.|+++|+||+|+.+. .+.++..... ...+ ++|++|||+
T Consensus 113 ~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~e~SAk 185 (205)
T 1gwn_A 113 ETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMA-----KQIGAATYIECSAL 185 (205)
T ss_dssp HHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHH-----HHHTCSEEEECCTT
T ss_pred HHHHHHHHHHHHHHHHHC--CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHH-----HHcCCCEEEEeeec
Confidence 999998 67877775432 47999999999998632 1222211111 1112 479999999
Q ss_pred -cCCCHHHHHHHHHHHHHh
Q 030931 138 -KGDGLYEGLDWLASTLKE 155 (169)
Q Consensus 138 -~~~gi~~~~~~l~~~~~~ 155 (169)
++.|++++|+++++.+.+
T Consensus 186 ~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 186 QSENSVRDIFHVATLACVN 204 (205)
T ss_dssp TCHHHHHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHHhh
Confidence 689999999999988764
No 89
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.95 E-value=9.6e-28 Score=168.31 Aligned_cols=154 Identities=15% Similarity=0.098 Sum_probs=98.4
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEE-EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR 73 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 73 (169)
+++.+|+|||||+++| ...+.||.+..+. .+.. ..+.+.+|||||++.+..++..+++.+|++++|||++++
T Consensus 39 vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 118 (214)
T 2j1l_A 39 LVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSP 118 (214)
T ss_dssp EEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEEEEETTCH
T ss_pred EECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCH
Confidence 5678999999999987 3455677765442 3344 456899999999999999999999999999999999999
Q ss_pred hhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---------CCCCCCcee-EEEEeeeccCCCH
Q 030931 74 ERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLG---------LFDLKNRKW-HIQGTCALKGDGL 142 (169)
Q Consensus 74 ~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~---------~~~~~~~~~-~~~~~Sa~~~~gi 142 (169)
.+|+.+. .|+..+.... ++.|+++|+||+|+.+.....+...... .......++ +++++||++|.|+
T Consensus 119 ~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi 196 (214)
T 2j1l_A 119 NSFDNIFNRWYPEVNHFC--KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNV 196 (214)
T ss_dssp HHHHHHHHTHHHHHHHHC--SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBSH
T ss_pred HHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCCCCCCH
Confidence 9999986 6877775432 5789999999999965321111100000 000112233 7999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 030931 143 YEGLDWLASTLKEMR 157 (169)
Q Consensus 143 ~~~~~~l~~~~~~~~ 157 (169)
+++|+++.+.+.+.+
T Consensus 197 ~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 197 HAVFQEAAEVALSSR 211 (214)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999887654
No 90
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=2.5e-27 Score=165.33 Aligned_cols=154 Identities=16% Similarity=0.169 Sum_probs=109.8
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEE-EEEEC--CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE-KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR 73 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 73 (169)
+++.+++|||||++++ ...+.||.+..+. .+... .+.+.+|||||++.+..++..+++.+|++++|||++++
T Consensus 30 vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 109 (207)
T 2fv8_A 30 VVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSP 109 (207)
T ss_dssp EEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCH
T ss_pred EECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCH
Confidence 5678999999999976 3455677775542 34443 47899999999999999999999999999999999999
Q ss_pred hhHHHH-HHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCC---------CCCcee-EEEEeeeccCCCH
Q 030931 74 ERIGKA-KQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFD---------LKNRKW-HIQGTCALKGDGL 142 (169)
Q Consensus 74 ~~~~~~-~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~---------~~~~~~-~~~~~Sa~~~~gi 142 (169)
.++..+ ..|+..+.... ++.|+++|+||+|+.+.....+....+.... ....+. +++++||++|.|+
T Consensus 110 ~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi 187 (207)
T 2fv8_A 110 DSLENIPEKWVPEVKHFC--PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGV 187 (207)
T ss_dssp HHHHHHHHTHHHHHHHHS--TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTH
T ss_pred HHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCCH
Confidence 999988 56776664422 5799999999999864321111111110000 011122 7999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 030931 143 YEGLDWLASTLKEMR 157 (169)
Q Consensus 143 ~~~~~~l~~~~~~~~ 157 (169)
+++|+++.+.+.+.+
T Consensus 188 ~el~~~l~~~i~~~~ 202 (207)
T 2fv8_A 188 REVFETATRAALQKR 202 (207)
T ss_dssp HHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999887653
No 91
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.95 E-value=6.3e-29 Score=170.46 Aligned_cols=151 Identities=13% Similarity=0.160 Sum_probs=110.5
Q ss_pred ccccCCCCCceeeeece-------eeeeeeeeEEEEEEEE-------CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEE
Q 030931 2 LRVKQPYCTSCTLVKFY-------LLFLLLVRFNVEKVQY-------KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYV 67 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~-------~~~~~t~~~~~~~~~~-------~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 67 (169)
|++.+|+|||||+++|. ..+.||++.++..... ..+.+++|||+|++++..+++.++++++++++|
T Consensus 7 ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v 86 (184)
T 2zej_A 7 IVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAV 86 (184)
T ss_dssp EESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSEEEEEE
T ss_pred EECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCcEEEEE
Confidence 67899999999999873 3467888877654332 478899999999999999999999999999999
Q ss_pred EECCCh-hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh----HHHhhhCCCCCCCcee----EEEEeeecc
Q 030931 68 VDSLDR-ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM----EVCEGLGLFDLKNRKW----HIQGTCALK 138 (169)
Q Consensus 68 ~d~~~~-~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~----~~~~~~~~~~~~~~~~----~~~~~Sa~~ 138 (169)
||++++ .+++.+..|+..+.... ++.|+++|+||+|+.+..... +....+. ...++ +++++||++
T Consensus 87 ~d~~~~~~s~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~Sa~~ 160 (184)
T 2zej_A 87 YDLSKGQAEVDAMKPWLFNIKARA--SSSPVILVGTHLDVSDEKQRKACMSKITKELL----NKRGFPAIRDYHFVNATE 160 (184)
T ss_dssp EEGGGCHHHHHTHHHHHHHHHHHC--TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTT----TCTTSCEEEEEEECCTTS
T ss_pred EeCCcchhHHHHHHHHHHHHHhhC--CCCcEEEEEECCCcccchhhHHHHHHHHHHHH----HhcCCcchhheEEEeccc
Confidence 999987 57888999998875532 478999999999986432211 1112221 22233 499999999
Q ss_pred CC-CHHHHHHHHHHHHHhhhc
Q 030931 139 GD-GLYEGLDWLASTLKEMRA 158 (169)
Q Consensus 139 ~~-gi~~~~~~l~~~~~~~~~ 158 (169)
+. |++++++.+.+.+.+.+.
T Consensus 161 ~~~~~~~l~~~i~~~~~~~~~ 181 (184)
T 2zej_A 161 ESDALAKLRKTIINESLNFKI 181 (184)
T ss_dssp CCHHHHHHHHHHHHHHHCC--
T ss_pred CchhHHHHHHHHHHHHhcccc
Confidence 97 999999999988877543
No 92
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.94 E-value=1.7e-28 Score=167.44 Aligned_cols=147 Identities=15% Similarity=0.146 Sum_probs=101.5
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEEE---EEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK---VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR 73 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 73 (169)
+++.+|+|||||+++| ...+.||.+..+.. ++...+.+++|||||++++..++..+++++|++++|||++++
T Consensus 13 v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 92 (182)
T 3bwd_D 13 TVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK 92 (182)
T ss_dssp EECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCH
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCH
Confidence 5678999999999976 45566777644321 333567788999999999999999999999999999999999
Q ss_pred hhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCC------------CHhHHHhhhCCCCCCCcee-EEEEeeeccC
Q 030931 74 ERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAM------------TPMEVCEGLGLFDLKNRKW-HIQGTCALKG 139 (169)
Q Consensus 74 ~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 139 (169)
.+++.+. .|+..+.... ++.|+++|+||+|+.+.. ..++... + ....+. +++++||++|
T Consensus 93 ~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~-~----~~~~~~~~~~~~Sa~~~ 165 (182)
T 3bwd_D 93 ASYENVSKKWIPELKHYA--PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEE-L----KKLIGAPAYIECSSKSQ 165 (182)
T ss_dssp HHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHH-H----HHHHTCSEEEECCTTTC
T ss_pred HHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHH-H----HHHcCCCEEEEEECCCC
Confidence 9999987 6877775432 479999999999986432 1111111 1 112233 7999999999
Q ss_pred CCHHHHHHHHHHHHHh
Q 030931 140 DGLYEGLDWLASTLKE 155 (169)
Q Consensus 140 ~gi~~~~~~l~~~~~~ 155 (169)
.|++++|+++.+.+.+
T Consensus 166 ~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 166 ENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp TTHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999987653
No 93
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.94 E-value=2.1e-28 Score=179.82 Aligned_cols=151 Identities=17% Similarity=0.087 Sum_probs=109.5
Q ss_pred ccccCCCCCceeeeec----ee----eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchh---hHHhhccCCCEEEEEEEC
Q 030931 2 LRVKQPYCTSCTLVKF----YL----LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRP---LWRHYFNNTDGLIYVVDS 70 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f----~~----~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~~~ii~v~d~ 70 (169)
|++..|+|||||++++ .+ .+.||+|+++..++ ..++++||||+||++|+. .+..|+++++++|+|||+
T Consensus 4 llGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Di 82 (331)
T 3r7w_B 4 LMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDS 82 (331)
T ss_dssp EECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCC
T ss_pred EECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEEEEC
Confidence 6788999999999864 22 25789998877663 568999999999999974 478999999999999999
Q ss_pred CCh--hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC----HhHHHhhhCCCCCCC----ceeEEEEeeeccCC
Q 030931 71 LDR--ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT----PMEVCEGLGLFDLKN----RKWHIQGTCALKGD 140 (169)
Q Consensus 71 ~~~--~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~----~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~ 140 (169)
+++ +.+.....|+..+.+. .++.|++++|||+|+.+... .+++....+...++. .++.|++|||++ .
T Consensus 83 td~~~~~~~~l~~~l~~~~~~--~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~ 159 (331)
T 3r7w_B 83 QDEYINAITNLAMIIEYAYKV--NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-H 159 (331)
T ss_dssp SSCTTHHHHHHHHHHHHHHHH--CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-S
T ss_pred CchHHHHHHHHHHHHHHHhhc--CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-C
Confidence 987 2222333334333222 25899999999999965321 133444333233332 578999999998 5
Q ss_pred CHHHHHHHHHHHHHhh
Q 030931 141 GLYEGLDWLASTLKEM 156 (169)
Q Consensus 141 gi~~~~~~l~~~~~~~ 156 (169)
||.+.|..+++.+.+.
T Consensus 160 nV~eAFs~iv~~li~~ 175 (331)
T 3r7w_B 160 SIYEAFSRIVQKLIPE 175 (331)
T ss_dssp HHHHHHHHHHTTSSTT
T ss_pred cHHHHHHHHHHHHHhh
Confidence 8999999998766543
No 94
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.94 E-value=2.9e-29 Score=174.06 Aligned_cols=146 Identities=23% Similarity=0.362 Sum_probs=107.5
Q ss_pred ccccCCCCCceeeeece-----eeeeeeee--EEEEEEEECC--EEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVKFY-----LLFLLLVR--FNVEKVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~-----~~~~~t~~--~~~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
+++.+++|||||++++. ..+.||.+ .....+..++ +.+.+|||||++.+..++..+++.+|++|+|||+++
T Consensus 38 vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 117 (199)
T 3l0i_B 38 LIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD 117 (199)
T ss_dssp EECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCC
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCC
Confidence 56789999999999873 33445555 4445555554 789999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-----HhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-----PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD 147 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 147 (169)
+.+++.+..|+..+.... ..+.|+++|+||+|+.+... ..++.. ..+++++++||++|.|++++|+
T Consensus 118 ~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~--------~~~~~~~~vSA~~g~gv~~l~~ 188 (199)
T 3l0i_B 118 QESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFAD--------SLGIPFLETSAKNATNVEQSFM 188 (199)
T ss_dssp SHHHHHHHHHHHHHHSCC--CCSEEEEC-CCSSCC--CCCCSCC-CHHHH--------TTTCCBCCCCC---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc-cCCCCEEEEEECccCCccccCCHHHHHHHHH--------HcCCeEEEEECCCCCCHHHHHH
Confidence 999999999998886533 35799999999999864321 122222 2345699999999999999999
Q ss_pred HHHHHHHhh
Q 030931 148 WLASTLKEM 156 (169)
Q Consensus 148 ~l~~~~~~~ 156 (169)
++.+.+.++
T Consensus 189 ~l~~~l~~~ 197 (199)
T 3l0i_B 189 TMAAEIKKR 197 (199)
T ss_dssp HHTTTTTTT
T ss_pred HHHHHHHHh
Confidence 998876543
No 95
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.94 E-value=3e-27 Score=165.48 Aligned_cols=150 Identities=18% Similarity=0.184 Sum_probs=107.3
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEEEEEEC---CEEEEEEEcCCCCCchh-hHHhhccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEKVQYK---NVIFTVWDVGGQEKLRP-LWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~~~~~---~~~~~i~D~~G~~~~~~-~~~~~~~~~~~ii~v~d~~~ 72 (169)
+++.+|+|||||+++| .+.+ ++.+.++..+..+ .+.+++|||||++.+.. ++..+++.++++++|||+++
T Consensus 12 vvG~~~~GKTsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~ 90 (214)
T 2fh5_B 12 FVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAA 90 (214)
T ss_dssp EECSTTSSHHHHHHHHHHSCCCCBC-CCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTT
T ss_pred EECCCCCCHHHHHHHHhCCCccccc-CCcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCC
Confidence 5678999999999987 2333 3444555556665 78999999999999988 88899999999999999988
Q ss_pred hh-hHHHHHHHHHHHhcC--CCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC-----------------------CCCCC-
Q 030931 73 RE-RIGKAKQEFQAIIKD--PFMLNSVILVFANKQDMKGAMTPMEVCEGLG-----------------------LFDLK- 125 (169)
Q Consensus 73 ~~-~~~~~~~~~~~~~~~--~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~-----------------------~~~~~- 125 (169)
.. ++.....++..++.. ....+.|+++|+||+|+.+....+++.+.+. .....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~ 170 (214)
T 2fh5_B 91 FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGK 170 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCSSC
T ss_pred cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCccccccccC
Confidence 54 466666655554432 1234789999999999976554332222111 00001
Q ss_pred --------Cc--eeEEEEeeeccC------CCHHHHHHHHHHH
Q 030931 126 --------NR--KWHIQGTCALKG------DGLYEGLDWLAST 152 (169)
Q Consensus 126 --------~~--~~~~~~~Sa~~~------~gi~~~~~~l~~~ 152 (169)
.. .++|++|||++| .||+++|+++.+.
T Consensus 171 ~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 171 KGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp TTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred CCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 11 678999999999 9999999999875
No 96
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.94 E-value=1.9e-27 Score=165.27 Aligned_cols=152 Identities=15% Similarity=0.158 Sum_probs=112.4
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEE-EEEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV-EKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR 73 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~-~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 73 (169)
+++.+++|||||+++| ...+.||.+..+ ..+.. ..+.+.+|||||++++..++..+++.+|++++|||++++
T Consensus 30 vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 109 (201)
T 2gco_A 30 IVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSP 109 (201)
T ss_dssp EEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCH
T ss_pred EECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCH
Confidence 5678999999999976 455667777544 33444 347899999999999999999999999999999999999
Q ss_pred hhHHHH-HHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCC---------CCCCCcee-EEEEeeeccCCCH
Q 030931 74 ERIGKA-KQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGL---------FDLKNRKW-HIQGTCALKGDGL 142 (169)
Q Consensus 74 ~~~~~~-~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~---------~~~~~~~~-~~~~~Sa~~~~gi 142 (169)
.++..+ ..|+..+.... ++.|+++|+||+|+.+.....+....... ......+. +++++||++|.|+
T Consensus 110 ~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi 187 (201)
T 2gco_A 110 DSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGV 187 (201)
T ss_dssp HHHHHHHHTHHHHHHHHS--TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTH
T ss_pred HHHHHHHHHHHHHHHHhC--CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCCCCCCH
Confidence 999988 56766664422 47999999999999754111111000000 00011223 7999999999999
Q ss_pred HHHHHHHHHHHHh
Q 030931 143 YEGLDWLASTLKE 155 (169)
Q Consensus 143 ~~~~~~l~~~~~~ 155 (169)
+++|+++.+.+.+
T Consensus 188 ~~l~~~i~~~~l~ 200 (201)
T 2gco_A 188 REVFEMATRAGLQ 200 (201)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999987653
No 97
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.94 E-value=1.7e-27 Score=165.96 Aligned_cols=150 Identities=18% Similarity=0.199 Sum_probs=110.7
Q ss_pred ccccCCCCCceeeee-----ceeeeeeeeeEEEE-EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931 2 LRVKQPYCTSCTLVK-----FYLLFLLLVRFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR 73 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~-----f~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 73 (169)
+++.+|+|||||+++ |...+.||.+..+. .+.. ..+.+.+|||||++.+..++..+++.+|++++|||++++
T Consensus 35 vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 114 (204)
T 4gzl_A 35 VVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSP 114 (204)
T ss_dssp EEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCH
T ss_pred EECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCH
Confidence 567899999999965 45667777775443 2333 567788999999999999999999999999999999999
Q ss_pred hhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC---------CCCCce-eEEEEeeeccCCCH
Q 030931 74 ERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF---------DLKNRK-WHIQGTCALKGDGL 142 (169)
Q Consensus 74 ~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~---------~~~~~~-~~~~~~Sa~~~~gi 142 (169)
.++..+. .|+..+.... .+.|+++|+||+|+.+.....+........ .....+ .+++++||++|.|+
T Consensus 115 ~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi 192 (204)
T 4gzl_A 115 ASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGL 192 (204)
T ss_dssp HHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTH
T ss_pred HHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCCCCCCH
Confidence 9999987 6777765433 579999999999986542211111111000 001112 36999999999999
Q ss_pred HHHHHHHHHHH
Q 030931 143 YEGLDWLASTL 153 (169)
Q Consensus 143 ~~~~~~l~~~~ 153 (169)
+++|+++.+.+
T Consensus 193 ~~l~~~l~~~~ 203 (204)
T 4gzl_A 193 KTVFDEAIRAV 203 (204)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 99999998754
No 98
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.94 E-value=1.6e-28 Score=169.70 Aligned_cols=151 Identities=15% Similarity=0.032 Sum_probs=108.2
Q ss_pred ccccCCCCCceeeeecee------eeeeeeeEE--EEEEEEC--CEEEEEEEcCCCCC-chhhHHhhccCCCEEEEEEEC
Q 030931 2 LRVKQPYCTSCTLVKFYL------LFLLLVRFN--VEKVQYK--NVIFTVWDVGGQEK-LRPLWRHYFNNTDGLIYVVDS 70 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~------~~~~t~~~~--~~~~~~~--~~~~~i~D~~G~~~-~~~~~~~~~~~~~~ii~v~d~ 70 (169)
|++.+++|||||+++|.. ...++.+.+ ...+..+ .+.+.+|||+|++. +..++..+++.++++++|||+
T Consensus 11 lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv 90 (192)
T 2cjw_A 11 LIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSI 90 (192)
T ss_dssp EECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSEEEEEEET
T ss_pred EECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEEC
Confidence 678999999999998842 122334433 2334443 46778999999876 556778889999999999999
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHH
Q 030931 71 LDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDW 148 (169)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 148 (169)
+++.+|+.+..|+..+.+.....+.|+++|+||+|+... ...++.. .+ ....+++|++|||++|.||+++|++
T Consensus 91 ~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~-~~----a~~~~~~~~e~SA~~g~~v~~lf~~ 165 (192)
T 2cjw_A 91 TDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGR-AX----AVVFDXKFIETSAAVQHNVKELFEG 165 (192)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHH-HH----HHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHH-HH----HHHhCCceEEeccccCCCHHHHHHH
Confidence 999999999988877755333357999999999998542 2222111 11 1122357999999999999999999
Q ss_pred HHHHHHhhh
Q 030931 149 LASTLKEMR 157 (169)
Q Consensus 149 l~~~~~~~~ 157 (169)
+++.+....
T Consensus 166 l~~~~~~~~ 174 (192)
T 2cjw_A 166 IVRQVRLRR 174 (192)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhc
Confidence 999886554
No 99
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.94 E-value=2.1e-27 Score=162.45 Aligned_cols=154 Identities=18% Similarity=0.171 Sum_probs=114.0
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEE-EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR 73 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 73 (169)
+++.+|+|||||+++| ...+.||.+..+. .+.. ..+.+++|||||++.+..++..+++.+|++++|||++++
T Consensus 10 ~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 89 (186)
T 1mh1_A 10 VVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSP 89 (186)
T ss_dssp EECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCH
T ss_pred EECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCCh
Confidence 5678999999999765 5566777775442 2333 457788999999999999999999999999999999999
Q ss_pred hhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---------CCCCCCce-eEEEEeeeccCCCH
Q 030931 74 ERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLG---------LFDLKNRK-WHIQGTCALKGDGL 142 (169)
Q Consensus 74 ~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~---------~~~~~~~~-~~~~~~Sa~~~~gi 142 (169)
.++.... .|+..+.... ++.|+++|+||+|+.+.....+...... .......+ ++++++||++|.|+
T Consensus 90 ~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 167 (186)
T 1mh1_A 90 ASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGL 167 (186)
T ss_dssp HHHHHHHHTHHHHHHHHS--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTH
T ss_pred hhHHHHHHHHHHHHHHhC--CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCCCccCH
Confidence 9999987 6777775432 3799999999999864311111000000 00001123 37999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 030931 143 YEGLDWLASTLKEMR 157 (169)
Q Consensus 143 ~~~~~~l~~~~~~~~ 157 (169)
+++|+++.+.+.+..
T Consensus 168 ~~l~~~l~~~~~~~~ 182 (186)
T 1mh1_A 168 KTVFDEAIRAVLCPP 182 (186)
T ss_dssp HHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999887654
No 100
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.89 E-value=3.1e-28 Score=169.42 Aligned_cols=150 Identities=18% Similarity=0.206 Sum_probs=111.9
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEE---EEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE---KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR 73 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 73 (169)
+++.+|+|||||+++| ...+.||.+..+. .++...+.+++|||||++++...+..+++.+|++++|||++++
T Consensus 35 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~ 114 (204)
T 3th5_A 35 VVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSP 114 (204)
Confidence 5678999999999876 4455666664332 2333567888999999999999999999999999999999999
Q ss_pred hhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh---------HHHhhhCCCCCCCcee-EEEEeeeccCCCH
Q 030931 74 ERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM---------EVCEGLGLFDLKNRKW-HIQGTCALKGDGL 142 (169)
Q Consensus 74 ~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~---------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi 142 (169)
.++.... .|+..+.... ++.|+++|+||+|+.+..... .+............+. +++++||++|.|+
T Consensus 115 ~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi 192 (204)
T 3th5_A 115 ASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGL 192 (204)
Confidence 9999887 6776664322 379999999999996532111 1111111122233444 7999999999999
Q ss_pred HHHHHHHHHHH
Q 030931 143 YEGLDWLASTL 153 (169)
Q Consensus 143 ~~~~~~l~~~~ 153 (169)
+++|+++.+.+
T Consensus 193 ~~l~~~l~~~i 203 (204)
T 3th5_A 193 KTVFDEAIRAV 203 (204)
Confidence 99999998764
No 101
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.93 E-value=2.1e-27 Score=164.39 Aligned_cols=150 Identities=19% Similarity=0.167 Sum_probs=106.8
Q ss_pred CccccCCCCCceeeeeceee--eeeeeeEE--E--EEEE---ECCEEEEEEEcCCCCCchhhH---HhhccCCCEEEEEE
Q 030931 1 MLRVKQPYCTSCTLVKFYLL--FLLLVRFN--V--EKVQ---YKNVIFTVWDVGGQEKLRPLW---RHYFNNTDGLIYVV 68 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f~~~--~~~t~~~~--~--~~~~---~~~~~~~i~D~~G~~~~~~~~---~~~~~~~~~ii~v~ 68 (169)
++++..++|||||++++... ..+|.+.. . .... ...+.+++|||+|+++|.... ..++++++++|+||
T Consensus 24 ~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~ 103 (196)
T 3llu_A 24 LLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVI 103 (196)
T ss_dssp EEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEE
T ss_pred EEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEE
Confidence 36778999999998855221 11333322 1 1222 356899999999999987776 89999999999999
Q ss_pred ECCCh--hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC----CHhHHH----hhhCCCCCCCceeEEEEeeecc
Q 030931 69 DSLDR--ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM----TPMEVC----EGLGLFDLKNRKWHIQGTCALK 138 (169)
Q Consensus 69 d~~~~--~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~----~~~~~~----~~~~~~~~~~~~~~~~~~Sa~~ 138 (169)
|+++. +++..+..|+..+... .++.|+++|+||+|+.+.. ...++. ..+........+++|++|||++
T Consensus 104 d~~~~~~~~~~~~~~~l~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 181 (196)
T 3llu_A 104 DAQDDYMEALTRLHITVSKAYKV--NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD 181 (196)
T ss_dssp ETTSCCHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS
T ss_pred ECCCchHHHHHHHHHHHHHHHhc--CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech
Confidence 99987 6777777788776432 2589999999999986421 111221 1121111125568899999999
Q ss_pred CCCHHHHHHHHHHHH
Q 030931 139 GDGLYEGLDWLASTL 153 (169)
Q Consensus 139 ~~gi~~~~~~l~~~~ 153 (169)
.||+++|.++++.+
T Consensus 182 -~~v~~~f~~l~~~l 195 (196)
T 3llu_A 182 -HSIFEAFSKVVQKL 195 (196)
T ss_dssp -THHHHHHHHHHHHT
T ss_pred -hhHHHHHHHHHHHh
Confidence 99999999998764
No 102
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.93 E-value=6e-26 Score=154.24 Aligned_cols=151 Identities=17% Similarity=0.045 Sum_probs=109.1
Q ss_pred ccccCCCCCceeeeece-----eeeeeeee--EEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChh
Q 030931 2 LRVKQPYCTSCTLVKFY-----LLFLLLVR--FNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE 74 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~-----~~~~~t~~--~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 74 (169)
+++.+|+|||||+++|. ..+.|+.+ +....+..++..+.+|||||++.+..++..+++.+|++++|+|+++..
T Consensus 13 v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 92 (178)
T 2lkc_A 13 IMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGV 92 (178)
T ss_dssp EESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCC
T ss_pred EECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCC
Confidence 56789999999999872 33333333 444567778899999999999999999999999999999999998743
Q ss_pred hHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC--CCCCc--eeEEEEeeeccCCCHHHHHHHHH
Q 030931 75 RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF--DLKNR--KWHIQGTCALKGDGLYEGLDWLA 150 (169)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~Sa~~~~gi~~~~~~l~ 150 (169)
..... .++..+.. .+.|+++|+||+|+.+. ..+++...+... ..... .++++++||++|.|++++|+++.
T Consensus 93 ~~~~~-~~l~~~~~----~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 166 (178)
T 2lkc_A 93 MPQTV-EAINHAKA----ANVPIIVAINKMDKPEA-NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMIL 166 (178)
T ss_dssp CHHHH-HHHHHHGG----GSCCEEEEEETTTSSCS-CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHH
T ss_pred cHHHH-HHHHHHHh----CCCCEEEEEECccCCcC-CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHH
Confidence 22221 22333321 47899999999999753 333443333211 11122 26899999999999999999999
Q ss_pred HHHHhhhc
Q 030931 151 STLKEMRA 158 (169)
Q Consensus 151 ~~~~~~~~ 158 (169)
+.+...+.
T Consensus 167 ~~~~~~~~ 174 (178)
T 2lkc_A 167 LVSEMEEL 174 (178)
T ss_dssp HHHHHTTT
T ss_pred Hhhhhhcc
Confidence 98877654
No 103
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.93 E-value=1.6e-25 Score=158.39 Aligned_cols=153 Identities=14% Similarity=0.038 Sum_probs=103.5
Q ss_pred ccccCCCCCceeeeeceeeee-------eeeeEEEEEEEECCEEEEEEEcCCC------CCc---hhhHHhhccCCCEEE
Q 030931 2 LRVKQPYCTSCTLVKFYLLFL-------LLVRFNVEKVQYKNVIFTVWDVGGQ------EKL---RPLWRHYFNNTDGLI 65 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~-------~t~~~~~~~~~~~~~~~~i~D~~G~------~~~---~~~~~~~~~~~~~ii 65 (169)
|++.+|+|||||+++|..... .|.......+..++..+.+|||||+ +.. ...+..++..+|+++
T Consensus 34 vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i 113 (228)
T 2qu8_A 34 LSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVIL 113 (228)
T ss_dssp EECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEE
T ss_pred EECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEE
Confidence 677999999999998733222 2344455556667899999999999 331 112234578899999
Q ss_pred EEEECCChhhHH--HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhhhCCCCCCCce--eEEEEeeeccCC
Q 030931 66 YVVDSLDRERIG--KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM-EVCEGLGLFDLKNRK--WHIQGTCALKGD 140 (169)
Q Consensus 66 ~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~Sa~~~~ 140 (169)
+|||++++.++. ....|+..+... ..+.|+++|+||+|+.+..... +...... ......+ ++++++||++|.
T Consensus 114 ~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~SA~~g~ 190 (228)
T 2qu8_A 114 FIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIK-QILDNVKNPIKFSSFSTLTGV 190 (228)
T ss_dssp EEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHHH-HHHHHCCSCEEEEECCTTTCT
T ss_pred EEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHHH-HHHHhcCCCceEEEEecccCC
Confidence 999999987764 334566666443 2479999999999996532211 1100000 0111222 689999999999
Q ss_pred CHHHHHHHHHHHHHhhh
Q 030931 141 GLYEGLDWLASTLKEMR 157 (169)
Q Consensus 141 gi~~~~~~l~~~~~~~~ 157 (169)
|++++|+++.+.+.+.+
T Consensus 191 gi~~l~~~l~~~i~~~~ 207 (228)
T 2qu8_A 191 GVEQAKITACELLKNDQ 207 (228)
T ss_dssp THHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999887664
No 104
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.92 E-value=1.7e-26 Score=170.21 Aligned_cols=152 Identities=16% Similarity=0.142 Sum_probs=113.4
Q ss_pred ccccCCCCCceeeeec--------eeeeeeeeeEEEEEEEE-CCEEEEEEEcCCCCCc-----hhhHHhhccCCCEEEEE
Q 030931 2 LRVKQPYCTSCTLVKF--------YLLFLLLVRFNVEKVQY-KNVIFTVWDVGGQEKL-----RPLWRHYFNNTDGLIYV 67 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f--------~~~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~-----~~~~~~~~~~~~~ii~v 67 (169)
|+|.+|+|||||++++ .+.+.+|++..+..+.+ +++.+++|||||++++ ..++..+++++|++|+|
T Consensus 8 lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V 87 (307)
T 3r7w_A 8 LMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHV 87 (307)
T ss_dssp EECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEE
T ss_pred EECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEE
Confidence 6789999999999985 23678899998888876 7899999999999988 67888999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhc-CCCCCCCeEEEEEeCCCCCCCCCHhH---HHhhhCCCCCCCc---eeEEEEeeeccCC
Q 030931 68 VDSLDRERIGKAKQEFQAIIK-DPFMLNSVILVFANKQDMKGAMTPME---VCEGLGLFDLKNR---KWHIQGTCALKGD 140 (169)
Q Consensus 68 ~d~~~~~~~~~~~~~~~~~~~-~~~~~~~piivv~nK~Dl~~~~~~~~---~~~~~~~~~~~~~---~~~~~~~Sa~~~~ 140 (169)
||++++++++.+..|...+.. ....++.|+++|+||+|+.+.....+ +............ .++++++||++ .
T Consensus 88 ~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~ 166 (307)
T 3r7w_A 88 FDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-E 166 (307)
T ss_dssp EETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-S
T ss_pred EECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-C
Confidence 999999999988766443322 11125799999999999865211110 1111111111222 36899999999 8
Q ss_pred CHHHHHHHHHHHHH
Q 030931 141 GLYEGLDWLASTLK 154 (169)
Q Consensus 141 gi~~~~~~l~~~~~ 154 (169)
|+.++|..++..+.
T Consensus 167 ~i~e~~~~iv~~li 180 (307)
T 3r7w_A 167 SLYKAWSQIVCSLI 180 (307)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHc
Confidence 89999999886543
No 105
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.92 E-value=4.4e-25 Score=163.71 Aligned_cols=153 Identities=16% Similarity=0.165 Sum_probs=112.1
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEE-EEEEC--CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE-KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR 73 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 73 (169)
+++.+++|||||++++ ...+.+|.+..+. .+... .+.+++|||||++.+...+..+++.+|++++|||++++
T Consensus 160 i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 239 (332)
T 2wkq_A 160 VVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSP 239 (332)
T ss_dssp EEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCH
T ss_pred EECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCH
Confidence 5678999999999654 5667777775543 33443 46677999999999999999999999999999999999
Q ss_pred hhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC---------CCCCcee-EEEEeeeccCCCH
Q 030931 74 ERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF---------DLKNRKW-HIQGTCALKGDGL 142 (169)
Q Consensus 74 ~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~---------~~~~~~~-~~~~~Sa~~~~gi 142 (169)
.++..+. .|+..+.... .+.|+++|+||+|+.+.....+........ .....++ +++++||++|.|+
T Consensus 240 ~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 317 (332)
T 2wkq_A 240 ASFHHVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGL 317 (332)
T ss_dssp HHHHHHHHTHHHHHHHHC--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTH
T ss_pred HHHHHHHHHHHHHHHhhC--CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCCCCcCH
Confidence 9999887 6777665432 389999999999985431111100000000 0011233 7999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 030931 143 YEGLDWLASTLKEM 156 (169)
Q Consensus 143 ~~~~~~l~~~~~~~ 156 (169)
+++|+++.+.+.++
T Consensus 318 ~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 318 KTVFDEAIRAVLCP 331 (332)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999887653
No 106
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.92 E-value=6.9e-25 Score=147.82 Aligned_cols=137 Identities=19% Similarity=0.135 Sum_probs=98.9
Q ss_pred ccccCCCCCceeeeecee-----eeeeee--eEEEEEEEECCEEEEEEEcCCCCCch------hhHHhhcc--CCCEEEE
Q 030931 2 LRVKQPYCTSCTLVKFYL-----LFLLLV--RFNVEKVQYKNVIFTVWDVGGQEKLR------PLWRHYFN--NTDGLIY 66 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~-----~~~~t~--~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~--~~~~ii~ 66 (169)
|++.+|+|||||++++.. ...|+. ......+..++..+++|||||++.+. .+...+++ +++++++
T Consensus 8 lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 87 (165)
T 2wji_A 8 LIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVN 87 (165)
T ss_dssp EECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEE
T ss_pred EECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEE
Confidence 577899999999998733 223333 33445566778999999999999875 34566665 8999999
Q ss_pred EEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC----CHhHHHhhhCCCCCCCceeEEEEeeeccCCCH
Q 030931 67 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM----TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGL 142 (169)
Q Consensus 67 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 142 (169)
|+|+++.++ ...|+..+.+ .+.|+++|+||+|+.... ..+++.+.++ ++++++||++|+|+
T Consensus 88 v~D~~~~~~---~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~SA~~~~~v 152 (165)
T 2wji_A 88 IVDATALER---NLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKILG--------VKVVPLSAAKKMGI 152 (165)
T ss_dssp EEETTCHHH---HHHHHHHHHH----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT--------SCEEECBGGGTBSH
T ss_pred EecCCchhH---hHHHHHHHHh----cCCCEEEEEEchHhccccChhhHHHHHHHHhC--------CCEEEEEcCCCCCH
Confidence 999987543 3456666643 368999999999974321 2233333332 45999999999999
Q ss_pred HHHHHHHHHHH
Q 030931 143 YEGLDWLASTL 153 (169)
Q Consensus 143 ~~~~~~l~~~~ 153 (169)
+++|+++.+.+
T Consensus 153 ~~l~~~l~~~~ 163 (165)
T 2wji_A 153 EELKKAISIAV 163 (165)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999998765
No 107
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.92 E-value=1.9e-25 Score=149.40 Aligned_cols=139 Identities=14% Similarity=0.098 Sum_probs=97.4
Q ss_pred ccccCCCCCceeeeeceeee--------eeeeeEEEEEEEECCEEEEEEEcCCCCC-------chhhHHhhccCCCEEEE
Q 030931 2 LRVKQPYCTSCTLVKFYLLF--------LLLVRFNVEKVQYKNVIFTVWDVGGQEK-------LRPLWRHYFNNTDGLIY 66 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~--------~~t~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~~~~ii~ 66 (169)
+++.+|+|||||++++.... ..|.......+...+..+.+|||||++. +...+..+++.+|++++
T Consensus 6 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~ 85 (161)
T 2dyk_A 6 IVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLF 85 (161)
T ss_dssp EECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEE
T ss_pred EECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEE
Confidence 56789999999999873221 1122344555677888999999999987 34566778999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCcee-EEEEeeeccCCCHHHH
Q 030931 67 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKW-HIQGTCALKGDGLYEG 145 (169)
Q Consensus 67 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~ 145 (169)
|+|+++..+... .++..++.. .+.|+++|+||+|+.+. .++..+ +. ..++ +++++||++|.|++++
T Consensus 86 v~d~~~~~~~~~--~~~~~~~~~---~~~p~ilv~nK~Dl~~~--~~~~~~-~~-----~~~~~~~~~~Sa~~~~gv~~l 152 (161)
T 2dyk_A 86 AVDGRAELTQAD--YEVAEYLRR---KGKPVILVATKVDDPKH--ELYLGP-LY-----GLGFGDPIPTSSEHARGLEEL 152 (161)
T ss_dssp EEESSSCCCHHH--HHHHHHHHH---HTCCEEEEEECCCSGGG--GGGCGG-GG-----GGSSCSCEECBTTTTBSHHHH
T ss_pred EEECCCcccHhH--HHHHHHHHh---cCCCEEEEEECcccccc--hHhHHH-HH-----hCCCCCeEEEecccCCChHHH
Confidence 999987543322 233333332 36899999999998643 111111 11 2233 5899999999999999
Q ss_pred HHHHHHHH
Q 030931 146 LDWLASTL 153 (169)
Q Consensus 146 ~~~l~~~~ 153 (169)
|+++.+.+
T Consensus 153 ~~~l~~~l 160 (161)
T 2dyk_A 153 LEAIWERL 160 (161)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhC
Confidence 99998764
No 108
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.91 E-value=2.4e-25 Score=151.12 Aligned_cols=142 Identities=13% Similarity=0.089 Sum_probs=101.7
Q ss_pred ccccCCCCCceeeeeceeee--------eeeeeEEEEEEEECCEEEEEEEcCCCCCchhh--------HHhhccCCCEEE
Q 030931 2 LRVKQPYCTSCTLVKFYLLF--------LLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPL--------WRHYFNNTDGLI 65 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~--------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~~~~~ii 65 (169)
|++.+|+|||||++++.... ..|.......+..++..+.+|||||++.+... ...+++.+|+++
T Consensus 9 ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i 88 (172)
T 2gj8_A 9 IAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVL 88 (172)
T ss_dssp EEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEE
T ss_pred EECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEE
Confidence 56789999999999874322 12333445667778888999999999764321 124679999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHH
Q 030931 66 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG 145 (169)
Q Consensus 66 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 145 (169)
+|+|+++..++.. ..|+..+.+.. ..+.|+++|+||+|+.+... + .....+.+++++||++|.|++++
T Consensus 89 ~v~D~~~~~s~~~-~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~~~~--~--------~~~~~~~~~~~~SA~~g~gv~~l 156 (172)
T 2gj8_A 89 FMVDGTTTDAVDP-AEIWPEFIARL-PAKLPITVVRNKADITGETL--G--------MSEVNGHALIRLSARTGEGVDVL 156 (172)
T ss_dssp EEEETTTCCCCSH-HHHCHHHHHHS-CTTCCEEEEEECHHHHCCCC--E--------EEEETTEEEEECCTTTCTTHHHH
T ss_pred EEEECCCCCCHHH-HHHHHHHHHhc-ccCCCEEEEEECccCCcchh--h--------hhhccCCceEEEeCCCCCCHHHH
Confidence 9999998887763 46666654422 24799999999999853210 0 11123467999999999999999
Q ss_pred HHHHHHHHHh
Q 030931 146 LDWLASTLKE 155 (169)
Q Consensus 146 ~~~l~~~~~~ 155 (169)
|+++.+.+..
T Consensus 157 ~~~l~~~~~~ 166 (172)
T 2gj8_A 157 RNHLKQSMGF 166 (172)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHhhh
Confidence 9999886643
No 109
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.90 E-value=1.8e-25 Score=160.78 Aligned_cols=144 Identities=11% Similarity=0.069 Sum_probs=101.2
Q ss_pred CCCCceeeeecee--------eeeeee-eEEEE------------------EEEECCEEEEEEE----------------
Q 030931 7 PYCTSCTLVKFYL--------LFLLLV-RFNVE------------------KVQYKNVIFTVWD---------------- 43 (169)
Q Consensus 7 ~~~Ktsll~~f~~--------~~~~t~-~~~~~------------------~~~~~~~~~~i~D---------------- 43 (169)
++|||||+++|.. .+.||. +..+. .++...+.++|||
T Consensus 38 ~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~i~D~~~~~D~~~~~~~~~~ 117 (255)
T 3c5h_A 38 GIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECKMHIVEQTEFIDDQTFQPHRST 117 (255)
T ss_dssp CCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------CEEEEEECCCEETTTCSBTTGG
T ss_pred CcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEEEEEEEcccccccccccccccc
Confidence 9999999998743 345554 32111 1344678899999
Q ss_pred -------cCCCCCchhhHHhhcc---------------------CCCEEEEEEECCCh--hhHHHHHHHHHHHhcCCCCC
Q 030931 44 -------VGGQEKLRPLWRHYFN---------------------NTDGLIYVVDSLDR--ERIGKAKQEFQAIIKDPFML 93 (169)
Q Consensus 44 -------~~G~~~~~~~~~~~~~---------------------~~~~ii~v~d~~~~--~~~~~~~~~~~~~~~~~~~~ 93 (169)
++|++++..++..+++ +||++|+|||++++ .+|+.+..|+..+.+.....
T Consensus 118 ~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~ 197 (255)
T 3c5h_A 118 ALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKT 197 (255)
T ss_dssp GCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHT
T ss_pred ccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccC
Confidence 7888888888888887 79999999999998 99999999998886532224
Q ss_pred CCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHH
Q 030931 94 NSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 154 (169)
Q Consensus 94 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 154 (169)
+.|+++|+||+|+.+....++... +.. ...+++++++||++|.|++++|+++.+.+.
T Consensus 198 ~~piilV~NK~Dl~~~~~v~~~~~-~~~---~~~~~~~~e~SAk~g~gv~elf~~l~~~l~ 254 (255)
T 3c5h_A 198 KKPIVVVLTKCDEGVERYIRDAHT-FAL---SKKNLQVVETSARSNVNVDLAFSTLVQLID 254 (255)
T ss_dssp TCCEEEEEECGGGBCHHHHHHHHH-HHH---TSSSCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcccccccHHHHHHHH-HHH---hcCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 799999999999854322222111 110 112467999999999999999999998764
No 110
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.90 E-value=1.3e-24 Score=149.89 Aligned_cols=141 Identities=12% Similarity=0.010 Sum_probs=97.2
Q ss_pred ccccCCCCCceeeeecee-----eeeeeeeEEE--EEEEECCEEEEEEEcCC----------CCCchhhHHhhccCC---
Q 030931 2 LRVKQPYCTSCTLVKFYL-----LFLLLVRFNV--EKVQYKNVIFTVWDVGG----------QEKLRPLWRHYFNNT--- 61 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~-----~~~~t~~~~~--~~~~~~~~~~~i~D~~G----------~~~~~~~~~~~~~~~--- 61 (169)
|++.+|+|||||++++.. .+.++.+.+. .....+ ..+.+||||| ++.+..++..+++.+
T Consensus 28 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (195)
T 1svi_A 28 LAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN-DELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREEL 106 (195)
T ss_dssp EEEBTTSSHHHHHHHHHTC-------------CCEEEEEET-TTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTE
T ss_pred EECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEEC-CcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcC
Confidence 567899999999998732 3334444221 222333 3699999999 666777788888877
Q ss_pred CEEEEEEECCChhhHHHHH--HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh----HHHhhhCCCCCCCceeEEEEee
Q 030931 62 DGLIYVVDSLDRERIGKAK--QEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM----EVCEGLGLFDLKNRKWHIQGTC 135 (169)
Q Consensus 62 ~~ii~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~----~~~~~~~~~~~~~~~~~~~~~S 135 (169)
+++++|+|+++..++.... .|+.. .+.|+++|+||+|+.+..... ++.+.+. ...+++++++|
T Consensus 107 ~~~i~v~d~~~~~~~~~~~~~~~~~~-------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~S 175 (195)
T 1svi_A 107 KAVVQIVDLRHAPSNDDVQMYEFLKY-------YGIPVIVIATKADKIPKGKWDKHAKVVRQTLN----IDPEDELILFS 175 (195)
T ss_dssp EEEEEEEETTSCCCHHHHHHHHHHHH-------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHT----CCTTSEEEECC
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHH-------cCCCEEEEEECcccCChHHHHHHHHHHHHHHc----ccCCCceEEEE
Confidence 9999999999877766532 33322 478999999999997543322 2222232 23456899999
Q ss_pred eccCCCHHHHHHHHHHHHH
Q 030931 136 ALKGDGLYEGLDWLASTLK 154 (169)
Q Consensus 136 a~~~~gi~~~~~~l~~~~~ 154 (169)
|++|.|++++|+++.+.+.
T Consensus 176 a~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 176 SETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp TTTCTTHHHHHHHHHHHHT
T ss_pred ccCCCCHHHHHHHHHHHhc
Confidence 9999999999999998764
No 111
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.90 E-value=1.3e-23 Score=156.97 Aligned_cols=137 Identities=21% Similarity=0.340 Sum_probs=112.1
Q ss_pred eeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC----------hhhHHHHHHHHHHHhcCC
Q 030931 21 FLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD----------RERIGKAKQEFQAIIKDP 90 (169)
Q Consensus 21 ~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~ 90 (169)
+.||+|++...+..+++++++|||+||++++..|..++++++++|+|||+++ .+++.....|+..++...
T Consensus 177 ~~~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~ 256 (353)
T 1cip_A 177 RVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 256 (353)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCG
T ss_pred cCceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCc
Confidence 4578888888899999999999999999999999999999999999999998 578999999999998866
Q ss_pred CCCCCeEEEEEeCCCCCC-----------------CCCHhHHHhhhC-----CCCC-CCceeEEEEeeeccCCCHHHHHH
Q 030931 91 FMLNSVILVFANKQDMKG-----------------AMTPMEVCEGLG-----LFDL-KNRKWHIQGTCALKGDGLYEGLD 147 (169)
Q Consensus 91 ~~~~~piivv~nK~Dl~~-----------------~~~~~~~~~~~~-----~~~~-~~~~~~~~~~Sa~~~~gi~~~~~ 147 (169)
...+.|+++++||+|+.. ..+.++...... +... ..+++.+++|||+++.||.++|+
T Consensus 257 ~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~ 336 (353)
T 1cip_A 257 WFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFD 336 (353)
T ss_dssp GGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHH
T ss_pred cccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHH
Confidence 567899999999999842 133333332221 1110 24567899999999999999999
Q ss_pred HHHHHHHhhh
Q 030931 148 WLASTLKEMR 157 (169)
Q Consensus 148 ~l~~~~~~~~ 157 (169)
++.+.+.+..
T Consensus 337 ~v~~~i~~~~ 346 (353)
T 1cip_A 337 AVTDVIIKNN 346 (353)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 9999887654
No 112
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.90 E-value=8.8e-24 Score=144.85 Aligned_cols=141 Identities=18% Similarity=0.152 Sum_probs=105.7
Q ss_pred ccccCCCCCceeeeecee-----eeee--eeeEEEEEEEECCEEEEEEEcCCCCCch------hhHHhhcc--CCCEEEE
Q 030931 2 LRVKQPYCTSCTLVKFYL-----LFLL--LVRFNVEKVQYKNVIFTVWDVGGQEKLR------PLWRHYFN--NTDGLIY 66 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~-----~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~--~~~~ii~ 66 (169)
|++..|+|||||++++.. ...| |.......+..++..+.+|||||++.+. .++..+++ .++++++
T Consensus 12 lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 91 (188)
T 2wjg_A 12 LIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVN 91 (188)
T ss_dssp EECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEE
T ss_pred EECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEE
Confidence 577899999999998743 2223 3334556677788999999999999874 45666665 5999999
Q ss_pred EEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC----CHhHHHhhhCCCCCCCceeEEEEeeeccCCCH
Q 030931 67 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM----TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGL 142 (169)
Q Consensus 67 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 142 (169)
|+|.++ ++....|+..+.. .+.|+++|+||+|+.... ..+++.+.++ ++++++||+++.|+
T Consensus 92 v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~~v 156 (188)
T 2wjg_A 92 IVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKILG--------VKVVPLSAAKKMGI 156 (188)
T ss_dssp EEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT--------SCEEECBGGGTBSH
T ss_pred Eecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhhccccccchHHHHHHHHHhC--------CCeEEEEecCCCCH
Confidence 999865 5566677777754 478999999999985321 2334444333 45999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 030931 143 YEGLDWLASTLKEMR 157 (169)
Q Consensus 143 ~~~~~~l~~~~~~~~ 157 (169)
+++|+++...+.+..
T Consensus 157 ~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 157 EELKKAISIAVKDKK 171 (188)
T ss_dssp HHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999887765
No 113
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.90 E-value=6.2e-26 Score=155.69 Aligned_cols=153 Identities=14% Similarity=0.061 Sum_probs=104.5
Q ss_pred ccccCCCCCceeeeece-----eeeeeeeeEEEEEEEECCEEEEEEEcCC-----------CCCchhhHHhhccC-CCEE
Q 030931 2 LRVKQPYCTSCTLVKFY-----LLFLLLVRFNVEKVQYKNVIFTVWDVGG-----------QEKLRPLWRHYFNN-TDGL 64 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~-----~~~~~t~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~~~~~~-~~~i 64 (169)
+++.+|+|||||++++. ..+.|+.......+... .+.+||||| ++.+..++..+++. ++++
T Consensus 6 v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (190)
T 2cxx_A 6 FAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNI 83 (190)
T ss_dssp EEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGC
T ss_pred EECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccC
Confidence 56789999999999873 33444444444444444 689999999 56677777888887 7877
Q ss_pred EEEEECCChhhHHHH-HHHHHH--------HhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEE
Q 030931 65 IYVVDSLDRERIGKA-KQEFQA--------IIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQG 133 (169)
Q Consensus 65 i~v~d~~~~~~~~~~-~~~~~~--------~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 133 (169)
++|+++.+..++..+ ..|... +.......+.|+++|+||+|+.+.. ..+++.+.++... .....++++
T Consensus 84 ~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 162 (190)
T 2cxx_A 84 DVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPL-SEIDKVFIP 162 (190)
T ss_dssp CEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCG-GGHHHHEEE
T ss_pred CEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhhh-hccCCcEEE
Confidence 777777777777766 445432 1111112478999999999997543 1233444444311 111235899
Q ss_pred eeeccCCCHHHHHHHHHHHHHhhh
Q 030931 134 TCALKGDGLYEGLDWLASTLKEMR 157 (169)
Q Consensus 134 ~Sa~~~~gi~~~~~~l~~~~~~~~ 157 (169)
+||++|.|++++|+++.+.+.+.+
T Consensus 163 ~Sa~~~~~v~~l~~~l~~~~~~~~ 186 (190)
T 2cxx_A 163 ISAKFGDNIERLKNRIFEVIRERQ 186 (190)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred EecCCCCCHHHHHHHHHHhcchhh
Confidence 999999999999999999887754
No 114
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.90 E-value=3.1e-24 Score=148.77 Aligned_cols=150 Identities=18% Similarity=0.244 Sum_probs=113.1
Q ss_pred ccccCCCCCceeeeece-----eeeeeeeeEEE--EEEEECC--EEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVKFY-----LLFLLLVRFNV--EKVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~-----~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
|++..|+|||||++++. ..+.||++..+ ..+.+.+ +.+.+||++|++++...+..+++.++++++|+|+++
T Consensus 10 lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 89 (199)
T 2f9l_A 10 LIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAK 89 (199)
T ss_dssp EESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTC
T ss_pred EECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcC
Confidence 57789999999999763 34567776443 4455544 678899999999998888999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 150 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 150 (169)
..++..+..|+..+... ...+.|+++++||+|+.+.. ...+.. .+. ...++.++++||+++.|++++|+++.
T Consensus 90 ~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~-~l~----~~~~~~~~d~Sal~~~~i~~l~~~l~ 163 (199)
T 2f9l_A 90 HLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEAR-AFA----EKNNLSFIETSALDSTNVEEAFKNIL 163 (199)
T ss_dssp HHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHH-HHH----HHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccCcCHHHHH-HHH----HHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 99999888888766432 12468999999999996422 222221 111 22345689999999999999999999
Q ss_pred HHHHhhh
Q 030931 151 STLKEMR 157 (169)
Q Consensus 151 ~~~~~~~ 157 (169)
+.+.+..
T Consensus 164 ~~~~~~~ 170 (199)
T 2f9l_A 164 TEIYRIV 170 (199)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887643
No 115
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.89 E-value=6.1e-24 Score=152.75 Aligned_cols=136 Identities=15% Similarity=0.054 Sum_probs=101.3
Q ss_pred ccccCCCCCceeeeeceee-------eeeeeeEEEEEEEECCEEEEEEEcCCCCCchh----------hHHhhc--cCCC
Q 030931 2 LRVKQPYCTSCTLVKFYLL-------FLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRP----------LWRHYF--NNTD 62 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~-------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~~~--~~~~ 62 (169)
|++.+++|||||++++... +..|+......+..++..+.+|||||++.+.. +...++ +.+|
T Consensus 6 lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d 85 (256)
T 3iby_A 6 LIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYD 85 (256)
T ss_dssp EEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCS
T ss_pred EECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCC
Confidence 5789999999999987322 22334455667778889999999999988764 455667 8999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC----CHhHHHhhhCCCCCCCceeEEEEeeecc
Q 030931 63 GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM----TPMEVCEGLGLFDLKNRKWHIQGTCALK 138 (169)
Q Consensus 63 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 138 (169)
++|+|+|+++.++..... ..+.+ .+.|+++|+||+|+.... ....+.+.++ ++++++||++
T Consensus 86 ~vi~VvDas~~~~~~~l~---~~l~~----~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~vi~~SA~~ 150 (256)
T 3iby_A 86 CIINVIDACHLERHLYLT---SQLFE----LGKPVVVALNMMDIAEHRGISIDTEKLESLLG--------CSVIPIQAHK 150 (256)
T ss_dssp EEEEEEEGGGHHHHHHHH---HHHTT----SCSCEEEEEECHHHHHHTTCEECHHHHHHHHC--------SCEEECBGGG
T ss_pred EEEEEeeCCCchhHHHHH---HHHHH----cCCCEEEEEEChhcCCcCCcHHHHHHHHHHcC--------CCEEEEECCC
Confidence 999999998866555433 33322 278999999999975322 2334444443 4699999999
Q ss_pred CCCHHHHHHHHHHH
Q 030931 139 GDGLYEGLDWLAST 152 (169)
Q Consensus 139 ~~gi~~~~~~l~~~ 152 (169)
|.|++++|+++.+.
T Consensus 151 g~gi~el~~~i~~~ 164 (256)
T 3iby_A 151 NIGIPALQQSLLHC 164 (256)
T ss_dssp TBSHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999999876
No 116
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.89 E-value=1.2e-24 Score=149.70 Aligned_cols=147 Identities=18% Similarity=0.132 Sum_probs=97.8
Q ss_pred ccccCCCCCceeeeecee----eeeeeeeEEEEE-EEECCEEEEEEEcCC----------CCCchhhHHhhccCC---CE
Q 030931 2 LRVKQPYCTSCTLVKFYL----LFLLLVRFNVEK-VQYKNVIFTVWDVGG----------QEKLRPLWRHYFNNT---DG 63 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~----~~~~t~~~~~~~-~~~~~~~~~i~D~~G----------~~~~~~~~~~~~~~~---~~ 63 (169)
|++.+|+|||||++++.. .+.++.+..... ....+..+.+||||| ++.+..++..+++.+ ++
T Consensus 28 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (195)
T 3pqc_A 28 FVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQM 107 (195)
T ss_dssp EEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEE
T ss_pred EECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceE
Confidence 577999999999998732 233344422211 122244688999999 556777777787776 99
Q ss_pred EEEEEECCChhhH--HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCC
Q 030931 64 LIYVVDSLDRERI--GKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDG 141 (169)
Q Consensus 64 ii~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 141 (169)
+++|+|.++..+. ..+..|+... +.|+++|+||+|+.+........+...........++++++||++|.|
T Consensus 108 vi~v~d~~~~~~~~~~~~~~~~~~~-------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 180 (195)
T 3pqc_A 108 VFLLVDGRIPPQDSDLMMVEWMKSL-------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEG 180 (195)
T ss_dssp EEEEEETTSCCCHHHHHHHHHHHHT-------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTT
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHc-------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCC
Confidence 9999999775433 3333444432 689999999999975433322222221110112345799999999999
Q ss_pred HHHHHHHHHHHHHh
Q 030931 142 LYEGLDWLASTLKE 155 (169)
Q Consensus 142 i~~~~~~l~~~~~~ 155 (169)
++++|+++.+.+.+
T Consensus 181 v~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 181 ISELLDLISTLLKE 194 (195)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999988754
No 117
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.89 E-value=4.6e-23 Score=154.48 Aligned_cols=137 Identities=22% Similarity=0.276 Sum_probs=104.1
Q ss_pred eeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC----------hhhHHHHHHHHHHHhcCC
Q 030931 21 FLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD----------RERIGKAKQEFQAIIKDP 90 (169)
Q Consensus 21 ~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~ 90 (169)
..||+|+....+..+++++++|||+|++.++..|..++++++++|||||+++ .+++.....|+..++...
T Consensus 185 r~~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~ 264 (362)
T 1zcb_A 185 RRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNR 264 (362)
T ss_dssp CCCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCG
T ss_pred cCCccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcch
Confidence 3467788888899999999999999999999999999999999999999998 789999999999998765
Q ss_pred CCCCCeEEEEEeCCCCCC-----------------C-CCHhHHHhhh-----CCCCCC-CceeEEEEeeeccCCCHHHHH
Q 030931 91 FMLNSVILVFANKQDMKG-----------------A-MTPMEVCEGL-----GLFDLK-NRKWHIQGTCALKGDGLYEGL 146 (169)
Q Consensus 91 ~~~~~piivv~nK~Dl~~-----------------~-~~~~~~~~~~-----~~~~~~-~~~~~~~~~Sa~~~~gi~~~~ 146 (169)
...+.|+++++||+|+.. . .+.++..... .+.... .+.+.+++|||++++||.++|
T Consensus 265 ~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF 344 (362)
T 1zcb_A 265 VFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVF 344 (362)
T ss_dssp GGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHH
T ss_pred hhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHH
Confidence 567899999999999852 1 3334433321 111111 356789999999999999999
Q ss_pred HHHHHHHHhhh
Q 030931 147 DWLASTLKEMR 157 (169)
Q Consensus 147 ~~l~~~~~~~~ 157 (169)
+++.+.+.+..
T Consensus 345 ~~v~~~i~~~~ 355 (362)
T 1zcb_A 345 RDVKDTILHDN 355 (362)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887654
No 118
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.89 E-value=4.2e-23 Score=148.57 Aligned_cols=139 Identities=18% Similarity=0.182 Sum_probs=103.5
Q ss_pred ccccCCCCCceeeeeceeee-------eeeeeEEEEEEEECCEEEEEEEcCCCCCchh------hHHhhc--cCCCEEEE
Q 030931 2 LRVKQPYCTSCTLVKFYLLF-------LLLVRFNVEKVQYKNVIFTVWDVGGQEKLRP------LWRHYF--NNTDGLIY 66 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~-------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~--~~~~~ii~ 66 (169)
|++.+++|||||++++.... ..|+......+..++..+.+|||||++.+.. +...++ ..+|++++
T Consensus 10 lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~ 89 (258)
T 3a1s_A 10 LAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVIL 89 (258)
T ss_dssp EECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEE
T ss_pred EECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEE
Confidence 67899999999999873322 2244445556777889999999999988764 335555 58999999
Q ss_pred EEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC----CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCH
Q 030931 67 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA----MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGL 142 (169)
Q Consensus 67 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 142 (169)
|+|+++.++. ..|...+.+ .+.|+++|+||+|+.+. .+..++.+.++ ++++++||++|.|+
T Consensus 90 V~D~t~~~~~---~~~~~~l~~----~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg--------~~vi~~SA~~g~gi 154 (258)
T 3a1s_A 90 VADSVNPEQS---LYLLLEILE----MEKKVILAMTAIDEAKKTGMKIDRYELQKHLG--------IPVVFTSSVTGEGL 154 (258)
T ss_dssp EEETTSCHHH---HHHHHHHHT----TTCCEEEEEECHHHHHHTTCCBCHHHHHHHHC--------SCEEECCTTTCTTH
T ss_pred EeCCCchhhH---HHHHHHHHh----cCCCEEEEEECcCCCCccchHHHHHHHHHHcC--------CCEEEEEeeCCcCH
Confidence 9999886543 345556543 27899999999997432 12344444443 46999999999999
Q ss_pred HHHHHHHHHHHHh
Q 030931 143 YEGLDWLASTLKE 155 (169)
Q Consensus 143 ~~~~~~l~~~~~~ 155 (169)
+++|+++.+.+..
T Consensus 155 ~el~~~i~~~~~~ 167 (258)
T 3a1s_A 155 EELKEKIVEYAQK 167 (258)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhc
Confidence 9999999987653
No 119
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.89 E-value=2.1e-23 Score=153.71 Aligned_cols=149 Identities=17% Similarity=0.075 Sum_probs=109.2
Q ss_pred ccccCCCCCceeeeecee--------eeeeeeeEEEEEEEEC-CEEEEEEEcCCCCCch----------hhHHhhccCCC
Q 030931 2 LRVKQPYCTSCTLVKFYL--------LFLLLVRFNVEKVQYK-NVIFTVWDVGGQEKLR----------PLWRHYFNNTD 62 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~--------~~~~t~~~~~~~~~~~-~~~~~i~D~~G~~~~~----------~~~~~~~~~~~ 62 (169)
+.+.+++|||||+|++.. ....|.......+..+ +..+.+|||||+.... ..+..+++.+|
T Consensus 15 ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD 94 (308)
T 3iev_A 15 IVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEAD 94 (308)
T ss_dssp EECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCS
T ss_pred EECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCC
Confidence 567899999999998732 2233433444556667 9999999999997654 55677889999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC-CCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCC
Q 030931 63 GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK-GAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDG 141 (169)
Q Consensus 63 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 141 (169)
++++|+|+++..++.....|+..+.. .+.|+++|+||+|+. +.....+....+... .....+++++||++|.|
T Consensus 95 ~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~--~~~~~~i~~vSA~~g~g 168 (308)
T 3iev_A 95 VILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKK--HPELTEIVPISALKGAN 168 (308)
T ss_dssp EEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHH--CTTCCCEEECBTTTTBS
T ss_pred EEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccCCCCHHHHHHHHHHHHHh--ccCCCeEEEEeCCCCCC
Confidence 99999999998888887776776643 368999999999986 332222222222110 00124599999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 030931 142 LYEGLDWLASTLKEM 156 (169)
Q Consensus 142 i~~~~~~l~~~~~~~ 156 (169)
++++|+++...+.+.
T Consensus 169 v~~L~~~l~~~l~~~ 183 (308)
T 3iev_A 169 LDELVKTILKYLPEG 183 (308)
T ss_dssp HHHHHHHHHHHSCBC
T ss_pred HHHHHHHHHHhCccC
Confidence 999999999988654
No 120
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.89 E-value=6.6e-23 Score=151.27 Aligned_cols=137 Identities=23% Similarity=0.348 Sum_probs=112.2
Q ss_pred eeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC----------ChhhHHHHHHHHHHHhcCC
Q 030931 21 FLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL----------DRERIGKAKQEFQAIIKDP 90 (169)
Q Consensus 21 ~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~----------~~~~~~~~~~~~~~~~~~~ 90 (169)
..||+|+....+..+++++++|||+||++++..|..++++++++|+|||++ +.+++.....|+..++...
T Consensus 151 r~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~ 230 (327)
T 3ohm_A 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 230 (327)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSG
T ss_pred cCceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhh
Confidence 567889999999999999999999999999999999999999999999664 6788999999999998876
Q ss_pred CCCCCeEEEEEeCCCCCC------------------CCCHhHHHhhh-----CCCCCCCceeEEEEeeeccCCCHHHHHH
Q 030931 91 FMLNSVILVFANKQDMKG------------------AMTPMEVCEGL-----GLFDLKNRKWHIQGTCALKGDGLYEGLD 147 (169)
Q Consensus 91 ~~~~~piivv~nK~Dl~~------------------~~~~~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 147 (169)
...+.|+++++||+|+.+ ..+.++..+.+ .......+++.+++|||+++.||..+|.
T Consensus 231 ~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~ 310 (327)
T 3ohm_A 231 WFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFA 310 (327)
T ss_dssp GGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHH
T ss_pred ccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHH
Confidence 667899999999999743 12333322211 1111244667889999999999999999
Q ss_pred HHHHHHHhhh
Q 030931 148 WLASTLKEMR 157 (169)
Q Consensus 148 ~l~~~~~~~~ 157 (169)
.+.+.+.+..
T Consensus 311 ~v~~~Il~~~ 320 (327)
T 3ohm_A 311 AVKDTILQLN 320 (327)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 9999988764
No 121
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.88 E-value=1.9e-23 Score=143.96 Aligned_cols=146 Identities=17% Similarity=0.243 Sum_probs=111.3
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEECC--EEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
|++..|+|||||++++ ...+.||++..+ ..+...+ +.+++||++|++++...+..+++.++++++|+|.++
T Consensus 34 lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 113 (191)
T 1oix_A 34 LIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAK 113 (191)
T ss_dssp EEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTC
T ss_pred EECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcC
Confidence 5678999999999976 345667777554 4455544 567789999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931 73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 150 (169)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 150 (169)
..+++.+..|+..+.+. ...+.|+++++||+|+.+.. ...+ ...+. ...++.++++||+++.|++++|+++.
T Consensus 114 ~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~-a~~l~----~~~~~~~ld~Sald~~~v~~l~~~l~ 187 (191)
T 1oix_A 114 HLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDE-ARAFA----EKNGLSFIETSALDSTNVEAAFQTIL 187 (191)
T ss_dssp HHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHH-HHHHH----HHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHH-HHHHH----HHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 99998888888766432 12468999999999986422 2222 22221 22345689999999999999999998
Q ss_pred HHH
Q 030931 151 STL 153 (169)
Q Consensus 151 ~~~ 153 (169)
+.+
T Consensus 188 ~~i 190 (191)
T 1oix_A 188 TEI 190 (191)
T ss_dssp HHH
T ss_pred HHh
Confidence 765
No 122
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.87 E-value=5.6e-23 Score=155.30 Aligned_cols=136 Identities=23% Similarity=0.321 Sum_probs=107.5
Q ss_pred eeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC----------hhhHHHHHHHHHHHhcCCC
Q 030931 22 LLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD----------RERIGKAKQEFQAIIKDPF 91 (169)
Q Consensus 22 ~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~~ 91 (169)
.+|+|+....+..+++++++|||+|+++++..|..++++++++|+|||+++ .++|..+..|+..+.....
T Consensus 202 ~~TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~ 281 (402)
T 1azs_C 202 VLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRW 281 (402)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTT
T ss_pred cceeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhccc
Confidence 357778888888899999999999999999999999999999999999999 8999999999999987655
Q ss_pred CCCCeEEEEEeCCCCCCC-----C-C--------------------------HhHHHhh----hC-C---CCCCCceeEE
Q 030931 92 MLNSVILVFANKQDMKGA-----M-T--------------------------PMEVCEG----LG-L---FDLKNRKWHI 131 (169)
Q Consensus 92 ~~~~piivv~nK~Dl~~~-----~-~--------------------------~~~~~~~----~~-~---~~~~~~~~~~ 131 (169)
..+.|+++|+||+|+... . . .++.... +. . .....+.+.+
T Consensus 282 ~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~ 361 (402)
T 1azs_C 282 LRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYP 361 (402)
T ss_dssp CSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEE
T ss_pred CCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEE
Confidence 678999999999997421 1 0 0111100 00 0 0001235678
Q ss_pred EEeeeccCCCHHHHHHHHHHHHHhhh
Q 030931 132 QGTCALKGDGLYEGLDWLASTLKEMR 157 (169)
Q Consensus 132 ~~~Sa~~~~gi~~~~~~l~~~~~~~~ 157 (169)
++|||+++.||.++|.++.+.+.+..
T Consensus 362 ~~TSA~d~~nV~~vF~~v~~~I~~~~ 387 (402)
T 1azs_C 362 HFTCAVDTENIRRVFNDCRDIIQRMH 387 (402)
T ss_dssp EECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeecCcCHHHHHHHHHHHHHHHH
Confidence 89999999999999999998887654
No 123
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.87 E-value=7.4e-23 Score=148.52 Aligned_cols=140 Identities=16% Similarity=0.076 Sum_probs=102.0
Q ss_pred ccccCCCCCceeeeeceeee-------eeeeeEEEEEEEECCEEEEEEEcCCCCCchh----------hHHhhc--cCCC
Q 030931 2 LRVKQPYCTSCTLVKFYLLF-------LLLVRFNVEKVQYKNVIFTVWDVGGQEKLRP----------LWRHYF--NNTD 62 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~-------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~~~--~~~~ 62 (169)
|++.+++|||||+|++.... ..|.......+...+..+.+|||||++.+.. .+..++ +.+|
T Consensus 8 lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d 87 (274)
T 3i8s_A 8 LIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDAD 87 (274)
T ss_dssp EEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCS
T ss_pred EECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCC
Confidence 57899999999999873322 2234445566777788999999999988762 233333 7999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC----CHhHHHhhhCCCCCCCceeEEEEeeecc
Q 030931 63 GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM----TPMEVCEGLGLFDLKNRKWHIQGTCALK 138 (169)
Q Consensus 63 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 138 (169)
++++|+|+++.++......++.+. +.|+++|+||+|+.+.. ..+.+.+.++ ++++++||++
T Consensus 88 ~ii~VvD~~~~~~~~~~~~~l~~~-------~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~~i~~SA~~ 152 (274)
T 3i8s_A 88 LLINVVDASNLERNLYLTLQLLEL-------GIPCIVALNMLDIAEKQNIRIEIDALSARLG--------CPVIPLVSTR 152 (274)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHH-------TCCEEEEEECHHHHHHTTEEECHHHHHHHHT--------SCEEECCCGG
T ss_pred EEEEEecCCChHHHHHHHHHHHhc-------CCCEEEEEECccchhhhhHHHHHHHHHHhcC--------CCEEEEEcCC
Confidence 999999998866555544444443 68999999999985422 2334444443 4699999999
Q ss_pred CCCHHHHHHHHHHHHHhh
Q 030931 139 GDGLYEGLDWLASTLKEM 156 (169)
Q Consensus 139 ~~gi~~~~~~l~~~~~~~ 156 (169)
|.|++++|+++.+.+.+.
T Consensus 153 g~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 153 GRGIEALKLAIDRYKANE 170 (274)
T ss_dssp GHHHHHHHHHHHTCCCCC
T ss_pred CCCHHHHHHHHHHHHhcC
Confidence 999999999998766543
No 124
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.87 E-value=8.2e-23 Score=149.99 Aligned_cols=145 Identities=15% Similarity=0.021 Sum_probs=101.4
Q ss_pred ccccCCCCCceeeeeceee--------eeeeeeEEEEEEEECCEEEEEEEcCCCCC--------chhhHHhhccCCCEEE
Q 030931 2 LRVKQPYCTSCTLVKFYLL--------FLLLVRFNVEKVQYKNVIFTVWDVGGQEK--------LRPLWRHYFNNTDGLI 65 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~--------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~~~~~ii 65 (169)
|++.+++|||||+|++... +.+|.......+..++..+.+|||||+.. +......+++.+|+++
T Consensus 12 ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il 91 (301)
T 1wf3_A 12 IVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVV 91 (301)
T ss_dssp EECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEE
T ss_pred EECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEE
Confidence 5789999999999987322 12232222233556889999999999886 4556667899999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCCCCCceeEEEEeeeccCCCHHH
Q 030931 66 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 144 (169)
Q Consensus 66 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 144 (169)
+|+|+++..+.. ..|+.+.++.. ..+.|+++|+||+|+.+... ..+....+ ....+++++||++|.|+++
T Consensus 92 ~VvD~~~~~~~~--~~~i~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~------~~~~~~~~iSA~~g~gv~~ 162 (301)
T 1wf3_A 92 WVVDLRHPPTPE--DELVARALKPL-VGKVPILLVGNKLDAAKYPEEAMKAYHEL------LPEAEPRMLSALDERQVAE 162 (301)
T ss_dssp EEEETTSCCCHH--HHHHHHHHGGG-TTTSCEEEEEECGGGCSSHHHHHHHHHHT------STTSEEEECCTTCHHHHHH
T ss_pred EEEECCCCCChH--HHHHHHHHHhh-cCCCCEEEEEECcccCCchHHHHHHHHHh------cCcCcEEEEeCCCCCCHHH
Confidence 999998765443 34543333322 14789999999999865422 12222222 1123689999999999999
Q ss_pred HHHHHHHHHHh
Q 030931 145 GLDWLASTLKE 155 (169)
Q Consensus 145 ~~~~l~~~~~~ 155 (169)
+++++...+.+
T Consensus 163 l~~~l~~~l~~ 173 (301)
T 1wf3_A 163 LKADLLALMPE 173 (301)
T ss_dssp HHHHHHTTCCB
T ss_pred HHHHHHHhccc
Confidence 99999887654
No 125
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.87 E-value=1.1e-23 Score=165.58 Aligned_cols=146 Identities=19% Similarity=0.184 Sum_probs=102.4
Q ss_pred ccccCCCCCceeeeec-----eeeeeeeeeEEEEEEE------------ECCEEEEEEEcCCCCCchhhHHhhccCCCEE
Q 030931 2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEKVQ------------YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGL 64 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~~~------------~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~i 64 (169)
|++.+++|||||++++ ...+.||++.++.+.. ...+.+.+|||||++.+...+..+++.++++
T Consensus 46 lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~i 125 (535)
T 3dpu_A 46 LIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVY 125 (535)
T ss_dssp EESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHHHHSSEEE
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHHccCCcEE
Confidence 6789999999999976 3556688887776432 1368999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCH
Q 030931 65 IYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGL 142 (169)
Q Consensus 65 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 142 (169)
|+|+|+++.+ ....|+..+.... ++.|+++|+||+|+.+.. ..++..... ...+.+++++||++|.|+
T Consensus 126 i~V~D~s~~~---~~~~~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~vSA~~g~gi 195 (535)
T 3dpu_A 126 MLLLDSRTDS---NKHYWLRHIEKYG--GKSPVIVVMNKIDENPSYNIEQKKINERF-----PAIENRFHRISCKNGDGV 195 (535)
T ss_dssp EEEECGGGGG---GHHHHHHHHHHHS--SSCCEEEEECCTTTCTTCCCCHHHHHHHC-----GGGTTCEEECCC-----C
T ss_pred EEEEeCCCch---hHHHHHHHHHHhC--CCCCEEEEEECCCcccccccCHHHHHHHH-----HhcCCceEEEecCcccCH
Confidence 9999997654 4455666664432 368999999999996533 233333322 223456999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 030931 143 YEGLDWLASTLKEMR 157 (169)
Q Consensus 143 ~~~~~~l~~~~~~~~ 157 (169)
+++|+++.+.+.+..
T Consensus 196 ~eL~~~l~~~~~~~~ 210 (535)
T 3dpu_A 196 ESIAKSLKSAVLHPD 210 (535)
T ss_dssp TTHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999887754
No 126
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.87 E-value=5.2e-24 Score=149.79 Aligned_cols=152 Identities=16% Similarity=0.086 Sum_probs=97.8
Q ss_pred ccccCCCCCceeeeeceeee---------eeeeeEEEEEEE-ECCEEEEEEEcCCCC----------CchhhHHhhccC-
Q 030931 2 LRVKQPYCTSCTLVKFYLLF---------LLLVRFNVEKVQ-YKNVIFTVWDVGGQE----------KLRPLWRHYFNN- 60 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~---------~~t~~~~~~~~~-~~~~~~~i~D~~G~~----------~~~~~~~~~~~~- 60 (169)
|++..|+|||||++++.... ..|.......+. .++..+.+|||||.. .+..+...+++.
T Consensus 34 v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (223)
T 4dhe_A 34 FAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTR 113 (223)
T ss_dssp EEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHC
T ss_pred EEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcC
Confidence 56789999999999874332 123333444444 357889999999953 335556666666
Q ss_pred --CCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHH----hhhCCC--CCCCceeEEE
Q 030931 61 --TDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVC----EGLGLF--DLKNRKWHIQ 132 (169)
Q Consensus 61 --~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~----~~~~~~--~~~~~~~~~~ 132 (169)
+|++++|+|.++..+.. ...++..+.. .+.|+++|+||+|+.+.....+.. +.+... ......++++
T Consensus 114 ~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 188 (223)
T 4dhe_A 114 PQLCGMILMMDARRPLTEL-DRRMIEWFAP----TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQ 188 (223)
T ss_dssp TTEEEEEEEEETTSCCCHH-HHHHHHHHGG----GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEE
T ss_pred cCcCEEEEEEeCCCCCCHH-HHHHHHHHHh----cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEE
Confidence 67799999998753322 2334444422 468999999999986532211111 111100 0002456899
Q ss_pred EeeeccCCCHHHHHHHHHHHHHhhhc
Q 030931 133 GTCALKGDGLYEGLDWLASTLKEMRA 158 (169)
Q Consensus 133 ~~Sa~~~~gi~~~~~~l~~~~~~~~~ 158 (169)
++||++|.|++++|+++.+.+.....
T Consensus 189 ~~SA~~g~gv~~l~~~l~~~~~~~~~ 214 (223)
T 4dhe_A 189 LFSALKRTGLDDAHALIESWLRPAAA 214 (223)
T ss_dssp EEBTTTTBSHHHHHHHHHHHHC----
T ss_pred EeecCCCcCHHHHHHHHHHhcCccCC
Confidence 99999999999999999998876543
No 127
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.87 E-value=4.3e-23 Score=149.45 Aligned_cols=138 Identities=19% Similarity=0.119 Sum_probs=99.7
Q ss_pred ccccCCCCCceeeeeceeee-----ee--eeeEEEEEEEECCEEEEEEEcCCCCCch------hhHHhhcc--CCCEEEE
Q 030931 2 LRVKQPYCTSCTLVKFYLLF-----LL--LVRFNVEKVQYKNVIFTVWDVGGQEKLR------PLWRHYFN--NTDGLIY 66 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~-----~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~--~~~~ii~ 66 (169)
|++.+++|||||++++.... .| |.......+.. +..+.+|||||++.+. .++..++. .+|++++
T Consensus 8 lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~ 86 (272)
T 3b1v_A 8 LIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILN 86 (272)
T ss_dssp EECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEE
T ss_pred EECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEE
Confidence 57899999999999884321 12 33333333433 6789999999999876 45666775 6999999
Q ss_pred EEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC----CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCH
Q 030931 67 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA----MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGL 142 (169)
Q Consensus 67 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 142 (169)
|+|+++.++. ..|...+.+ .+.|+++|+||+|+... .....+.+.++ ++++++||++|.|+
T Consensus 87 V~D~t~~e~~---~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~vi~~SA~~g~gi 151 (272)
T 3b1v_A 87 VVDATNLERN---LYLTTQLIE----TGIPVTIALNMIDVLDGQGKKINVDKLSYHLG--------VPVVATSALKQTGV 151 (272)
T ss_dssp EEEGGGHHHH---HHHHHHHHH----TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHT--------SCEEECBTTTTBSH
T ss_pred EecCCchHhH---HHHHHHHHh----cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcC--------CCEEEEEccCCCCH
Confidence 9999886544 345555543 37899999999997432 12344444443 46999999999999
Q ss_pred HHHHHHHHHHHHh
Q 030931 143 YEGLDWLASTLKE 155 (169)
Q Consensus 143 ~~~~~~l~~~~~~ 155 (169)
+++|+++.+.+..
T Consensus 152 ~el~~~i~~~~~~ 164 (272)
T 3b1v_A 152 DQVVKKAAHTTTS 164 (272)
T ss_dssp HHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHhh
Confidence 9999999886543
No 128
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.87 E-value=3.4e-22 Score=154.58 Aligned_cols=139 Identities=18% Similarity=0.146 Sum_probs=91.0
Q ss_pred ccccCCCCCceeeeeceeee--------eeeeeEEEEEEEECCEEEEEEEcCCCCCchhhH--------HhhccCCCEEE
Q 030931 2 LRVKQPYCTSCTLVKFYLLF--------LLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLW--------RHYFNNTDGLI 65 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~--------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~~~~~~~ii 65 (169)
|++.+++|||||+|++.... ..|.......+..+++.+.+|||||++.+...+ ..+++.+|+++
T Consensus 238 ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl 317 (476)
T 3gee_A 238 IAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLIL 317 (476)
T ss_dssp EECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCCSSCSEEE
T ss_pred EECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEE
Confidence 56799999999999884331 223334445677789999999999998766443 34688999999
Q ss_pred EEEECCChhhHHH---HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH--HHhhhCCCCCCCceeEEEEeeeccCC
Q 030931 66 YVVDSLDRERIGK---AKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME--VCEGLGLFDLKNRKWHIQGTCALKGD 140 (169)
Q Consensus 66 ~v~d~~~~~~~~~---~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~ 140 (169)
+|+|+++..++.. ...|+..+ .+.|+++|+||+|+.+...... +.+. ...+++++||++|.
T Consensus 318 ~VvD~s~~~s~~~~~~~~~~l~~l------~~~piIvV~NK~Dl~~~~~~~~~~l~~~--------~~~~~i~vSAktg~ 383 (476)
T 3gee_A 318 YLLDLGTERLDDELTEIRELKAAH------PAAKFLTVANKLDRAANADALIRAIADG--------TGTEVIGISALNGD 383 (476)
T ss_dssp EEEETTTCSSGGGHHHHHHHHHHC------TTSEEEEEEECTTSCTTTHHHHHHHHHH--------HTSCEEECBTTTTB
T ss_pred EEEECCCCcchhhhHHHHHHHHhc------CCCCEEEEEECcCCCCccchhHHHHHhc--------CCCceEEEEECCCC
Confidence 9999998877753 33444433 2789999999999976533211 2111 01358999999999
Q ss_pred CHHHHHHHHHHHHH
Q 030931 141 GLYEGLDWLASTLK 154 (169)
Q Consensus 141 gi~~~~~~l~~~~~ 154 (169)
|++++++++.+.+.
T Consensus 384 GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 384 GIDTLKQHMGDLVK 397 (476)
T ss_dssp SHHHHHHHHTHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999999887
No 129
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.87 E-value=8.2e-22 Score=142.82 Aligned_cols=142 Identities=20% Similarity=0.139 Sum_probs=105.0
Q ss_pred ccccCCCCCceeeeeceee-----eee--eeeEEEEEEEECCEEEEEEEcCCCCCchh------hHHhhc--cCCCEEEE
Q 030931 2 LRVKQPYCTSCTLVKFYLL-----FLL--LVRFNVEKVQYKNVIFTVWDVGGQEKLRP------LWRHYF--NNTDGLIY 66 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~-----~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~--~~~~~ii~ 66 (169)
|++.+|+|||||++++... ..| |+......+.+++..+.+|||||++.+.. .+..++ ..+|++++
T Consensus 8 lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 87 (271)
T 3k53_A 8 LVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVD 87 (271)
T ss_dssp EEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEE
T ss_pred EECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEE
Confidence 5779999999999987322 222 33344556777889999999999998766 566666 68999999
Q ss_pred EEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC----CCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCH
Q 030931 67 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG----AMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGL 142 (169)
Q Consensus 67 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 142 (169)
|+|.++.+ ....|+..+.+. ...|+++|+||+|+.+ ......+.+.++ ++++++||++|.|+
T Consensus 88 v~D~~~~~---~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~~~~~Sa~~g~gi 153 (271)
T 3k53_A 88 IVDSTCLM---RNLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKIDIKKMRKELG--------VPVIPTNAKKGEGV 153 (271)
T ss_dssp EEEGGGHH---HHHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHS--------SCEEECBGGGTBTH
T ss_pred EecCCcch---hhHHHHHHHHhc---CCCCEEEEEEChhcCcccccHHHHHHHHHHcC--------CcEEEEEeCCCCCH
Confidence 99998753 334455555432 2389999999999642 123445555554 45999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 030931 143 YEGLDWLASTLKEMR 157 (169)
Q Consensus 143 ~~~~~~l~~~~~~~~ 157 (169)
.++|+++...+.+..
T Consensus 154 ~~l~~~i~~~~~~~~ 168 (271)
T 3k53_A 154 EELKRMIALMAEGKV 168 (271)
T ss_dssp HHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999876543
No 130
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.87 E-value=4.7e-23 Score=158.40 Aligned_cols=150 Identities=13% Similarity=-0.031 Sum_probs=104.3
Q ss_pred ccccCCCCCceeeeeceee--------eeeeeeEEEEEEEECCEEEEEEEcCCC----------CCchhhHH-hhccCCC
Q 030931 2 LRVKQPYCTSCTLVKFYLL--------FLLLVRFNVEKVQYKNVIFTVWDVGGQ----------EKLRPLWR-HYFNNTD 62 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~--------~~~t~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~~-~~~~~~~ 62 (169)
+++.+++|||||++++... ...|.......+..++..+++|||||+ +.|..++. .+++.+|
T Consensus 180 lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad 259 (436)
T 2hjg_A 180 LIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSE 259 (436)
T ss_dssp EECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCS
T ss_pred EEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCC
Confidence 5678999999999987322 122223333456778889999999997 44444443 4788999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCCCCCceeEEEEeeeccCC
Q 030931 63 GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKGD 140 (169)
Q Consensus 63 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 140 (169)
++++|+|+++..++... .|+..+.. .+.|+++|+||+|+.+... .+++.+.+........+.+++++||++|.
T Consensus 260 ~~llv~D~~~~~s~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~ 334 (436)
T 2hjg_A 260 VVAVVLDGEEGIIEQDK-RIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKK 334 (436)
T ss_dssp EEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCT
T ss_pred EEEEEEcCCcCCcHHHH-HHHHHHHH----cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCC
Confidence 99999999988777664 46655543 4789999999999975433 22332222111112234579999999999
Q ss_pred CHHHHHHHHHHHHHhh
Q 030931 141 GLYEGLDWLASTLKEM 156 (169)
Q Consensus 141 gi~~~~~~l~~~~~~~ 156 (169)
|++++|+.+.+.+.+.
T Consensus 335 ~v~~l~~~i~~~~~~~ 350 (436)
T 2hjg_A 335 RIHTLMPAIIKASENH 350 (436)
T ss_dssp TGGGHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999877653
No 131
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.87 E-value=1.3e-22 Score=150.96 Aligned_cols=151 Identities=19% Similarity=0.113 Sum_probs=111.6
Q ss_pred ccccCCCCCceeeeeceee-------eeeeeeEEEEEEEECC-EEEEEEEcCCC----CCchhhHHhhcc---CCCEEEE
Q 030931 2 LRVKQPYCTSCTLVKFYLL-------FLLLVRFNVEKVQYKN-VIFTVWDVGGQ----EKLRPLWRHYFN---NTDGLIY 66 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~-------~~~t~~~~~~~~~~~~-~~~~i~D~~G~----~~~~~~~~~~~~---~~~~ii~ 66 (169)
|++.+++|||||++++... ..+|...+...+...+ ..+.+|||||+ ..+..+...+++ .++++|+
T Consensus 163 lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~ 242 (342)
T 1lnz_A 163 LVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVH 242 (342)
T ss_dssp EESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEE
T ss_pred eeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhccEEEE
Confidence 5678999999999988433 2456666666677764 89999999994 334445555544 5999999
Q ss_pred EEECCC---hhhHHHHHHHHHHHhcCC-CCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCCCCCceeEEEEeeeccCCC
Q 030931 67 VVDSLD---RERIGKAKQEFQAIIKDP-FMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCALKGDG 141 (169)
Q Consensus 67 v~d~~~---~~~~~~~~~~~~~~~~~~-~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 141 (169)
|+|+++ +.+++....|..++.... ...+.|+++|+||+|+.+... .+++.+.+.. .++++++||++++|
T Consensus 243 VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~------~~~v~~iSA~tg~g 316 (342)
T 1lnz_A 243 VIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTD------DYPVFPISAVTREG 316 (342)
T ss_dssp EEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCS------CCCBCCCSSCCSST
T ss_pred EEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhc------CCCEEEEECCCCcC
Confidence 999998 788888888888876532 245899999999999864311 1223333221 14689999999999
Q ss_pred HHHHHHHHHHHHHhhhc
Q 030931 142 LYEGLDWLASTLKEMRA 158 (169)
Q Consensus 142 i~~~~~~l~~~~~~~~~ 158 (169)
++++++++.+.+.+...
T Consensus 317 i~eL~~~l~~~l~~~~~ 333 (342)
T 1lnz_A 317 LRELLFEVANQLENTPE 333 (342)
T ss_dssp THHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHhhCcc
Confidence 99999999999877654
No 132
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.86 E-value=1.9e-22 Score=149.33 Aligned_cols=135 Identities=20% Similarity=0.273 Sum_probs=110.3
Q ss_pred eeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC----------ChhhHHHHHHHHHHHhcCC
Q 030931 21 FLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL----------DRERIGKAKQEFQAIIKDP 90 (169)
Q Consensus 21 ~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~----------~~~~~~~~~~~~~~~~~~~ 90 (169)
+.||+|+....+..+++++++|||+||++++.+|..++++++++|+|||++ +.+++.....|+..++...
T Consensus 145 ~~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~ 224 (340)
T 4fid_A 145 RTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE 224 (340)
T ss_dssp CCCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG
T ss_pred ccceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh
Confidence 567899999999999999999999999999999999999999999999998 7889999999999998876
Q ss_pred CCCCCeEEEEEeCCCCCCC-----------------CCHhHHH----hhh-------CCCCCCC-----------ceeEE
Q 030931 91 FMLNSVILVFANKQDMKGA-----------------MTPMEVC----EGL-------GLFDLKN-----------RKWHI 131 (169)
Q Consensus 91 ~~~~~piivv~nK~Dl~~~-----------------~~~~~~~----~~~-------~~~~~~~-----------~~~~~ 131 (169)
...+.|+++++||+|+.+. .+.++.. ..+ ....... +.+.+
T Consensus 225 ~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~ 304 (340)
T 4fid_A 225 FLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYT 304 (340)
T ss_dssp GGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEE
T ss_pred ccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEE
Confidence 6678999999999997431 1122211 111 1111111 46789
Q ss_pred EEeeeccCCCHHHHHHHHHHHHHh
Q 030931 132 QGTCALKGDGLYEGLDWLASTLKE 155 (169)
Q Consensus 132 ~~~Sa~~~~gi~~~~~~l~~~~~~ 155 (169)
++|||+++.||..+|+.+.+.+.+
T Consensus 305 h~TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 305 NPTNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp EEECTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEEeeCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999998887
No 133
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.86 E-value=4.9e-22 Score=151.53 Aligned_cols=143 Identities=15% Similarity=0.061 Sum_probs=102.6
Q ss_pred ccccCCCCCceeeeeceeee--------eeeeeEEEEEEEECCE-EEEEEEcCCCCCchhh-------HHhhccCCCEEE
Q 030931 2 LRVKQPYCTSCTLVKFYLLF--------LLLVRFNVEKVQYKNV-IFTVWDVGGQEKLRPL-------WRHYFNNTDGLI 65 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~--------~~t~~~~~~~~~~~~~-~~~i~D~~G~~~~~~~-------~~~~~~~~~~ii 65 (169)
+++..++|||||++++.... ..|.......+...+. ++.+|||||++.+..+ ...+++.+|+++
T Consensus 39 IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vl 118 (423)
T 3qq5_A 39 VAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGI 118 (423)
T ss_dssp EECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEE
T ss_pred EECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEE
Confidence 56788999999999884332 2334445566666544 8999999999877654 455788999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHH
Q 030931 66 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG 145 (169)
Q Consensus 66 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 145 (169)
+|+|++..+ ....|+..+.+. +.|+++|+||+|+.+.... +..+.+. ...+++++++||++|.|++++
T Consensus 119 lVvD~~~~~---~~~~~l~~l~~~----~~piIvV~NK~Dl~~~~~~-~~~~~l~----~~~g~~v~~vSAktg~gI~eL 186 (423)
T 3qq5_A 119 LVTDSAPTP---YEDDVVNLFKEM----EIPFVVVVNKIDVLGEKAE-ELKGLYE----SRYEAKVLLVSALQKKGFDDI 186 (423)
T ss_dssp EECSSSCCH---HHHHHHHHHHHT----TCCEEEECCCCTTTTCCCT-HHHHHSS----CCTTCCCCCCSSCCTTSTTTH
T ss_pred EEEeCCChH---HHHHHHHHHHhc----CCCEEEEEeCcCCCCccHH-HHHHHHH----HHcCCCEEEEECCCCCCHHHH
Confidence 999994433 334555555332 7899999999999765443 2333332 334567999999999999999
Q ss_pred HHHHHHHHHhh
Q 030931 146 LDWLASTLKEM 156 (169)
Q Consensus 146 ~~~l~~~~~~~ 156 (169)
|+++.+.+.+.
T Consensus 187 ~~~L~~~l~~~ 197 (423)
T 3qq5_A 187 GKTISEILPGD 197 (423)
T ss_dssp HHHHHHHSCCC
T ss_pred HHHHHHhhhhh
Confidence 99999988654
No 134
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.86 E-value=2e-21 Score=150.40 Aligned_cols=141 Identities=21% Similarity=0.214 Sum_probs=105.1
Q ss_pred ccccCCCCCceeeeecee--------eeeeeeeEEEEEEEECCEEEEEEEcCCCC-Cchh--------hHHhhccCCCEE
Q 030931 2 LRVKQPYCTSCTLVKFYL--------LFLLLVRFNVEKVQYKNVIFTVWDVGGQE-KLRP--------LWRHYFNNTDGL 64 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~--------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~-~~~~--------~~~~~~~~~~~i 64 (169)
|++.+++|||||+|++.. ....|..+....+..++..+.+|||||++ .+.. ....+++.+|++
T Consensus 248 ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~v 327 (482)
T 1xzp_A 248 IVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIV 327 (482)
T ss_dssp EECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEE
T ss_pred EECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEE
Confidence 567899999999998732 22334455566778889999999999987 5432 245678999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHH
Q 030931 65 IYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 144 (169)
Q Consensus 65 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 144 (169)
++|+|++++.+++... +++.+ .+.|+++|+||+|+.+..+.+++.+... ..++++++||++|+|+++
T Consensus 328 l~VvD~s~~~s~~~~~-il~~l------~~~piivV~NK~DL~~~~~~~~~~~~~~------~~~~~i~iSAktg~Gi~e 394 (482)
T 1xzp_A 328 LFVLDASSPLDEEDRK-ILERI------KNKRYLVVINKVDVVEKINEEEIKNKLG------TDRHMVKISALKGEGLEK 394 (482)
T ss_dssp EEEEETTSCCCHHHHH-HHHHH------TTSSEEEEEEECSSCCCCCHHHHHHHHT------CSTTEEEEEGGGTCCHHH
T ss_pred EEEecCCCCCCHHHHH-HHHHh------cCCCEEEEEECcccccccCHHHHHHHhc------CCCcEEEEECCCCCCHHH
Confidence 9999999887776533 33332 3689999999999976545445444322 123589999999999999
Q ss_pred HHHHHHHHHHh
Q 030931 145 GLDWLASTLKE 155 (169)
Q Consensus 145 ~~~~l~~~~~~ 155 (169)
+++++.+.+..
T Consensus 395 L~~~l~~~~~~ 405 (482)
T 1xzp_A 395 LEESIYRETQE 405 (482)
T ss_dssp HHHHHHHHTHH
T ss_pred HHHHHHHHHhh
Confidence 99999997654
No 135
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.86 E-value=1.3e-21 Score=150.44 Aligned_cols=144 Identities=15% Similarity=0.088 Sum_probs=98.8
Q ss_pred ccccCCCCCceeeeeceeee--------eeeeeEEEEEEEECCEEEEEEEcCCCCC---------chhhHHhhccCCCEE
Q 030931 2 LRVKQPYCTSCTLVKFYLLF--------LLLVRFNVEKVQYKNVIFTVWDVGGQEK---------LRPLWRHYFNNTDGL 64 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~--------~~t~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~~~~~~i 64 (169)
|++.+++|||||+|++.... ..|.......+.+++..+++|||||++. +..++..+++.||++
T Consensus 6 ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~i 85 (439)
T 1mky_A 6 IVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLV 85 (439)
T ss_dssp EECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEE
T ss_pred EECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEE
Confidence 67899999999999884332 1222344566778899999999999875 244567789999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCcee-EEEEeeeccCCCHH
Q 030931 65 IYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKW-HIQGTCALKGDGLY 143 (169)
Q Consensus 65 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~ 143 (169)
++|+|+++..+..+ .++..+++. .++|+++|+||+|+.+.. ..+....+. ..++ +++++||++|.|+.
T Consensus 86 l~V~D~~~~~~~~d--~~i~~~l~~---~~~p~ilv~NK~D~~~~~-~~~~~~~~~-----~lg~~~~~~iSA~~g~gv~ 154 (439)
T 1mky_A 86 LFVVDGKRGITKED--ESLADFLRK---STVDTILVANKAENLREF-EREVKPELY-----SLGFGEPIPVSAEHNINLD 154 (439)
T ss_dssp EEEEETTTCCCHHH--HHHHHHHHH---HTCCEEEEEESCCSHHHH-HHHTHHHHG-----GGSSCSCEECBTTTTBSHH
T ss_pred EEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEeCCCCcccc-HHHHHHHHH-----hcCCCCEEEEeccCCCCHH
Confidence 99999977544432 223333321 268999999999974320 111101111 1122 47999999999999
Q ss_pred HHHHHHHHHHHhh
Q 030931 144 EGLDWLASTLKEM 156 (169)
Q Consensus 144 ~~~~~l~~~~~~~ 156 (169)
++++++...+.+.
T Consensus 155 ~L~~~i~~~l~~~ 167 (439)
T 1mky_A 155 TMLETIIKKLEEK 167 (439)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHhcccc
Confidence 9999999988753
No 136
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.86 E-value=1.8e-22 Score=150.75 Aligned_cols=134 Identities=21% Similarity=0.322 Sum_probs=99.6
Q ss_pred eeeEEEEEEEE------CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC----------ChhhHHHHHHHHHHHh
Q 030931 24 LVRFNVEKVQY------KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL----------DRERIGKAKQEFQAII 87 (169)
Q Consensus 24 t~~~~~~~~~~------~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~----------~~~~~~~~~~~~~~~~ 87 (169)
|.|+....+.. +.+++++|||+||++++.+|..++++++++|+|||++ +.++|.....|+..+.
T Consensus 164 T~Gi~e~~f~~~~~~~~~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~ 243 (354)
T 2xtz_A 164 TTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL 243 (354)
T ss_dssp CCSEEEEEECCCCE------EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHH
T ss_pred ccceeeEEEEeccCccccceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHH
Confidence 44555555554 4689999999999999999999999999999999998 7889999999999998
Q ss_pred cCCCCCCCeEEEEEeCCCCCCC----CC-------------------HhHHHhhhCC--------C---CCCCceeEEEE
Q 030931 88 KDPFMLNSVILVFANKQDMKGA----MT-------------------PMEVCEGLGL--------F---DLKNRKWHIQG 133 (169)
Q Consensus 88 ~~~~~~~~piivv~nK~Dl~~~----~~-------------------~~~~~~~~~~--------~---~~~~~~~~~~~ 133 (169)
+....++.|+++|+||+|+.+. .+ .++....... . ....+.+.+++
T Consensus 244 ~~~~~~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~e 323 (354)
T 2xtz_A 244 KQPCFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYR 323 (354)
T ss_dssp TCGGGSSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEE
T ss_pred hccccCCCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEE
Confidence 7655578999999999997421 11 1111111000 0 00023456799
Q ss_pred eeeccCCCHHHHHHHHHHHHHhhh
Q 030931 134 TCALKGDGLYEGLDWLASTLKEMR 157 (169)
Q Consensus 134 ~Sa~~~~gi~~~~~~l~~~~~~~~ 157 (169)
|||++++||.++|+++.+.+.+..
T Consensus 324 TSA~d~~nV~~vF~~v~~~I~~~~ 347 (354)
T 2xtz_A 324 TTALDQKLVKKTFKLVDETLRRRN 347 (354)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred EEeecchhHHHHHHHHHHHHHHHH
Confidence 999999999999999999887654
No 137
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.85 E-value=1.6e-21 Score=146.30 Aligned_cols=148 Identities=16% Similarity=0.099 Sum_probs=107.1
Q ss_pred ccccCCCCCceeeeeceee-------eeeeeeEEEEEEEECCEEEEEEEcCCCCCch---------hhHHhhccCCCEEE
Q 030931 2 LRVKQPYCTSCTLVKFYLL-------FLLLVRFNVEKVQYKNVIFTVWDVGGQEKLR---------PLWRHYFNNTDGLI 65 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~-------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~~~~~~ii 65 (169)
+++.+|+|||||++++... ..+|.+.....+..++..+.+|||||..... .....+...+|+++
T Consensus 172 lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~il 251 (357)
T 2e87_A 172 IAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLII 251 (357)
T ss_dssp EECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEE
T ss_pred EECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEE
Confidence 5678999999999987332 2345556666677788999999999986532 11223445799999
Q ss_pred EEEECCChh--hHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHH
Q 030931 66 YVVDSLDRE--RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLY 143 (169)
Q Consensus 66 ~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 143 (169)
+|+|+++.. ++.....|+..+.... .+.|+++|+||+|+.+....++..... ...+++++++||++|+|++
T Consensus 252 lV~D~s~~~~~~~~~~~~~~~~i~~~~--~~~piilV~NK~Dl~~~~~~~~~~~~~-----~~~~~~~~~iSA~~g~gi~ 324 (357)
T 2e87_A 252 YIFDPSEHCGFPLEEQIHLFEEVHGEF--KDLPFLVVINKIDVADEENIKRLEKFV-----KEKGLNPIKISALKGTGID 324 (357)
T ss_dssp EEECTTCTTSSCHHHHHHHHHHHHHHT--TTSCEEEEECCTTTCCHHHHHHHHHHH-----HHTTCCCEECBTTTTBTHH
T ss_pred EEEeCCccccCCHHHHHHHHHHHHHhc--CCCCEEEEEECcccCChHHHHHHHHHH-----HhcCCCeEEEeCCCCcCHH
Confidence 999998876 6777778888776532 278999999999986432222222211 1223569999999999999
Q ss_pred HHHHHHHHHHHhh
Q 030931 144 EGLDWLASTLKEM 156 (169)
Q Consensus 144 ~~~~~l~~~~~~~ 156 (169)
++++++.+.+...
T Consensus 325 ~l~~~i~~~l~~~ 337 (357)
T 2e87_A 325 LVKEEIIKTLRPL 337 (357)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988664
No 138
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.85 E-value=3.1e-22 Score=154.59 Aligned_cols=151 Identities=13% Similarity=-0.011 Sum_probs=102.5
Q ss_pred ccccCCCCCceeeeeceee------eee--eeeEEEEEEEECCEEEEEEEcCC----------CCCchhhHHh-hccCCC
Q 030931 2 LRVKQPYCTSCTLVKFYLL------FLL--LVRFNVEKVQYKNVIFTVWDVGG----------QEKLRPLWRH-YFNNTD 62 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~------~~~--t~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~~~-~~~~~~ 62 (169)
+++.+++|||||++++... ..| |.......+..++..+++||||| ++++..++.. +++.+|
T Consensus 200 ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad 279 (456)
T 4dcu_A 200 LIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSE 279 (456)
T ss_dssp EECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCS
T ss_pred EecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCC
Confidence 5678999999999987422 111 22222345677888999999999 6777766554 789999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCCCCCceeEEEEeeeccCC
Q 030931 63 GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKGD 140 (169)
Q Consensus 63 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 140 (169)
++++|+|+++..+. ....|...+.+ .+.|+++|+||+|+.+... .++..+...........++++++||++|.
T Consensus 280 ~~llviD~~~~~~~-~~~~~~~~~~~----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 354 (456)
T 4dcu_A 280 VVAVVLDGEEGIIE-QDKRIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKK 354 (456)
T ss_dssp EEEEEEETTTCCCH-HHHHHHHHHHH----TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCT
T ss_pred EEEEEEeCCCCcCH-HHHHHHHHHHH----cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCc
Confidence 99999999874332 22344444432 4689999999999975332 23333222211111223579999999999
Q ss_pred CHHHHHHHHHHHHHhhh
Q 030931 141 GLYEGLDWLASTLKEMR 157 (169)
Q Consensus 141 gi~~~~~~l~~~~~~~~ 157 (169)
|++++|+++.+.+.+..
T Consensus 355 gv~~l~~~i~~~~~~~~ 371 (456)
T 4dcu_A 355 RIHTLMPAIIKASENHS 371 (456)
T ss_dssp TGGGHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 99999999998776543
No 139
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.84 E-value=9.2e-24 Score=148.12 Aligned_cols=135 Identities=21% Similarity=0.203 Sum_probs=91.3
Q ss_pred ccccCCCCCceeeeeceee--------eeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccC----CCEEEEEEE
Q 030931 2 LRVKQPYCTSCTLVKFYLL--------FLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNN----TDGLIYVVD 69 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~--------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~----~~~ii~v~d 69 (169)
+++.+|+|||||++++... +.|+.+.. +....+.+|||||++.++..+..+++. ++++|+|+|
T Consensus 17 ~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D 91 (218)
T 1nrj_B 17 IAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD-----YDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVD 91 (218)
T ss_dssp EECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETT-----GGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEE
T ss_pred EECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEE-----eeCceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEE
Confidence 5678999999999987322 33333322 267789999999999999999998887 899999999
Q ss_pred CC-ChhhHHHHHHHHHHHhcCC---CCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---CCCCCCceeEEEEeeeccCCC
Q 030931 70 SL-DRERIGKAKQEFQAIIKDP---FMLNSVILVFANKQDMKGAMTPMEVCEGLG---LFDLKNRKWHIQGTCALKGDG 141 (169)
Q Consensus 70 ~~-~~~~~~~~~~~~~~~~~~~---~~~~~piivv~nK~Dl~~~~~~~~~~~~~~---~~~~~~~~~~~~~~Sa~~~~g 141 (169)
++ ++.++.....|+..++... ...+.|+++|+||+|+.+.....++.+.+. .......+.+++++||++|.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 92 STVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEE 170 (218)
T ss_dssp TTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred CCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 99 8889999999988886532 225799999999999987655332221111 001122334577777777654
No 140
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.84 E-value=7e-22 Score=151.88 Aligned_cols=141 Identities=16% Similarity=0.153 Sum_probs=94.5
Q ss_pred ccccCCCCCceeeeeceeeee----eeeeE----EEEEEEECCEEEEEEEcCCCC--------CchhhHHhhccCCCEEE
Q 030931 2 LRVKQPYCTSCTLVKFYLLFL----LLVRF----NVEKVQYKNVIFTVWDVGGQE--------KLRPLWRHYFNNTDGLI 65 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~----~t~~~----~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~~~~~~ii 65 (169)
|++.+++|||||+|++..... ++.|. .+..+.+++..+.+|||||++ .+..++..+++.||+++
T Consensus 8 ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il 87 (436)
T 2hjg_A 8 IVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVII 87 (436)
T ss_dssp EECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHCSEEE
T ss_pred EECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEE
Confidence 567999999999999854432 23332 233445567889999999986 56677788999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCcee-EEEEeeeccCCCHHH
Q 030931 66 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKW-HIQGTCALKGDGLYE 144 (169)
Q Consensus 66 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~ 144 (169)
+|+|+++..+... .++..+++. .+.|+++|+||+|+.+.. .+..+. ...++ +++++||++|.|+.+
T Consensus 88 ~vvD~~~~~~~~d--~~~~~~l~~---~~~pvilv~NK~D~~~~~--~~~~~~------~~lg~~~~~~iSA~~g~gv~~ 154 (436)
T 2hjg_A 88 FMVNGREGVTAAD--EEVAKILYR---TKKPVVLAVNKLDNTEMR--ANIYDF------YSLGFGEPYPISGTHGLGLGD 154 (436)
T ss_dssp EEEETTTCSCHHH--HHHHHHHTT---CCSCEEEEEECCCC-------CCCSS------GGGSSCCCEECBTTTTBTHHH
T ss_pred EEEeCCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCccch--hhHHHH------HHcCCCCeEEEeCcCCCChHH
Confidence 9999987666543 445555543 478999999999986431 111111 11122 589999999999999
Q ss_pred HHHHHHHHHHh
Q 030931 145 GLDWLASTLKE 155 (169)
Q Consensus 145 ~~~~l~~~~~~ 155 (169)
+++++.+.+.+
T Consensus 155 L~~~i~~~l~~ 165 (436)
T 2hjg_A 155 LLDAVAEHFKN 165 (436)
T ss_dssp HHHHHHHTGGG
T ss_pred HHHHHHHhcCc
Confidence 99999988864
No 141
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.83 E-value=3.2e-21 Score=146.83 Aligned_cols=151 Identities=12% Similarity=0.002 Sum_probs=105.4
Q ss_pred ccccCCCCCceeeeeceeeeee-eeeEEEEEE--------------------------EECCEEEEEEEcCCCCCchhhH
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLL-LVRFNVEKV--------------------------QYKNVIFTVWDVGGQEKLRPLW 54 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~-t~~~~~~~~--------------------------~~~~~~~~i~D~~G~~~~~~~~ 54 (169)
+++..++|||||++++...... ..++..... ......+.+||||||+.|...+
T Consensus 13 vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~~~~~~~ 92 (403)
T 3sjy_A 13 VVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATM 92 (403)
T ss_dssp EECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCGGGHHHH
T ss_pred EECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcHHHHHHH
Confidence 4678999999999988432111 111111111 1122789999999999999999
Q ss_pred HhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh----HHHhhhCCCCCCCceeE
Q 030931 55 RHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM----EVCEGLGLFDLKNRKWH 130 (169)
Q Consensus 55 ~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~----~~~~~~~~~~~~~~~~~ 130 (169)
...++.+|++++|+|+++..++.....++..+... ...|+++|+||+|+.+..... ++.+.+.. .....++
T Consensus 93 ~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~--~~~~~~~ 167 (403)
T 3sjy_A 93 LSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG--TWAENVP 167 (403)
T ss_dssp HHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT--STTTTCC
T ss_pred HHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHHHHHHHHHHHh--hCCCCCE
Confidence 99999999999999998876677777666554321 235899999999997542221 22222211 1223567
Q ss_pred EEEeeeccCCCHHHHHHHHHHHHHhhh
Q 030931 131 IQGTCALKGDGLYEGLDWLASTLKEMR 157 (169)
Q Consensus 131 ~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 157 (169)
++++||++|.|++++++++.+.+....
T Consensus 168 ii~vSA~~g~gi~~L~~~l~~~l~~~~ 194 (403)
T 3sjy_A 168 IIPVSALHKINIDSLIEGIEEYIKTPY 194 (403)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred EEEEECCCCcChHHHHHHHHHhCCCCC
Confidence 999999999999999999998775543
No 142
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.83 E-value=1.2e-20 Score=142.03 Aligned_cols=145 Identities=7% Similarity=-0.096 Sum_probs=110.0
Q ss_pred ccccCCCCCceeeeeceeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHH
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQ 81 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~ 81 (169)
+++..++|||||++++. ....|++..+..+..++.++.+|||||+++|.......++.+|++|+|+| + ...+....+
T Consensus 26 iiG~~d~GKSTL~~~L~-~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~-~g~~~qt~e 102 (370)
T 2elf_A 26 IIGTEKSGRTSLAANLG-KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-P-QGLDAHTGE 102 (370)
T ss_dssp EEESTTSSHHHHHHTTS-EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-T-TCCCHHHHH
T ss_pred EECCCCCCHHHHHHHHH-hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-C-CCCcHHHHH
Confidence 46688999999999997 66788888888888888999999999999998888888999999999999 4 344555555
Q ss_pred HHHHHhcCCCCCCCeE-EEEEe-CCCCCCCCCH----hHHHhhhCCCCCCCceeEEEE--eeecc---CCCHHHHHHHHH
Q 030931 82 EFQAIIKDPFMLNSVI-LVFAN-KQDMKGAMTP----MEVCEGLGLFDLKNRKWHIQG--TCALK---GDGLYEGLDWLA 150 (169)
Q Consensus 82 ~~~~~~~~~~~~~~pi-ivv~n-K~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~--~Sa~~---~~gi~~~~~~l~ 150 (169)
++..+.. .+.|. ++++| |+|+ +.... +++.+.+... ....+++++ +||++ ++|++++++.+.
T Consensus 103 ~~~~~~~----~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~--~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~ 175 (370)
T 2elf_A 103 CIIALDL----LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGT--VLQDWECISLNTNKSAKNPFEGVDELKARIN 175 (370)
T ss_dssp HHHHHHH----TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTS--TTTTCEEEECCCCTTSSSTTTTHHHHHHHHH
T ss_pred HHHHHHH----cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhc--CCCceEEEecccccccCcCCCCHHHHHHHHH
Confidence 5554422 24666 89999 9998 43211 2222222211 113468999 99999 999999999999
Q ss_pred HHHHhh
Q 030931 151 STLKEM 156 (169)
Q Consensus 151 ~~~~~~ 156 (169)
+.+...
T Consensus 176 ~~~~~~ 181 (370)
T 2elf_A 176 EVAEKI 181 (370)
T ss_dssp HHHHHH
T ss_pred hhcccc
Confidence 887654
No 143
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.83 E-value=1.5e-20 Score=148.65 Aligned_cols=146 Identities=14% Similarity=0.129 Sum_probs=102.0
Q ss_pred ccccCCCCCceeeeeceee----------------------eeeeeeEEEEEEEEC-----CEEEEEEEcCCCCCchhhH
Q 030931 2 LRVKQPYCTSCTLVKFYLL----------------------FLLLVRFNVEKVQYK-----NVIFTVWDVGGQEKLRPLW 54 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~----------------------~~~t~~~~~~~~~~~-----~~~~~i~D~~G~~~~~~~~ 54 (169)
+++..++|||||++++... ...|+......+.+. .+.+++||||||..|...+
T Consensus 9 IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF~~ev 88 (599)
T 3cb4_D 9 IIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEV 88 (599)
T ss_dssp EECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGGGHHHH
T ss_pred EECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchHHHHHH
Confidence 4567899999999987221 111222223344443 4899999999999999999
Q ss_pred HhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhCCCCCCCceeEE
Q 030931 55 RHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP---MEVCEGLGLFDLKNRKWHI 131 (169)
Q Consensus 55 ~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~ 131 (169)
..+++.+|++|+|+|+++..+......|..... .++|+++|+||+|+.+.... +++.+.++.. ..++
T Consensus 89 ~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~-----~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~-----~~~v 158 (599)
T 3cb4_D 89 SRSLAACEGALLVVDAGQGVEAQTLANCYTAME-----MDLEVVPVLNKIDLPAADPERVAEEIEDIVGID-----ATDA 158 (599)
T ss_dssp HHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH-----TTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCC-----CTTC
T ss_pred HHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-----CCCCEEEeeeccCcccccHHHHHHHHHHHhCCC-----cceE
Confidence 999999999999999998777766666665442 36899999999999765321 2333333321 1238
Q ss_pred EEeeeccCCCHHHHHHHHHHHHHhhh
Q 030931 132 QGTCALKGDGLYEGLDWLASTLKEMR 157 (169)
Q Consensus 132 ~~~Sa~~~~gi~~~~~~l~~~~~~~~ 157 (169)
+++||++|.|++++++++.+.+....
T Consensus 159 i~vSAktg~GI~~Ll~~I~~~lp~p~ 184 (599)
T 3cb4_D 159 VRCSAKTGVGVQDVLERLVRDIPPPE 184 (599)
T ss_dssp EEECTTTCTTHHHHHHHHHHHSCCCC
T ss_pred EEeecccCCCchhHHHHHhhcCCCcc
Confidence 99999999999999999999887654
No 144
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.83 E-value=9.8e-21 Score=148.11 Aligned_cols=103 Identities=16% Similarity=0.129 Sum_probs=81.8
Q ss_pred ccccCCCCCceeeeece----------------------e-------eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchh
Q 030931 2 LRVKQPYCTSCTLVKFY----------------------L-------LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRP 52 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~----------------------~-------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 52 (169)
|++..++|||||++++. . ....|+......+.++++.+++|||||++.|..
T Consensus 18 IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~~df~~ 97 (528)
T 3tr5_A 18 IISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGHADFTE 97 (528)
T ss_dssp EEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCSTTCCH
T ss_pred EECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCchhHHH
Confidence 56789999999999872 0 123355556677888999999999999999999
Q ss_pred hHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030931 53 LWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA 109 (169)
Q Consensus 53 ~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~ 109 (169)
.+..+++.+|++|+|+|+++..+......| ..+.. .++|+++|+||+|+...
T Consensus 98 ~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~----~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 98 DTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL----RHTPIMTFINKMDRDTR 149 (528)
T ss_dssp HHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT----TTCCEEEEEECTTSCCS
T ss_pred HHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH----cCCCEEEEEeCCCCccc
Confidence 999999999999999999887666655444 33322 36899999999999654
No 145
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.82 E-value=3.6e-21 Score=148.40 Aligned_cols=142 Identities=12% Similarity=0.050 Sum_probs=93.4
Q ss_pred ccccCCCCCceeeeeceee--------eeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHH--------hhccCCCEEE
Q 030931 2 LRVKQPYCTSCTLVKFYLL--------FLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWR--------HYFNNTDGLI 65 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~--------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~--------~~~~~~~~ii 65 (169)
|.+.+++|||||+|++... ...|..+....+..++..+.+|||||+..+...+. .+++.+|+++
T Consensus 229 ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl 308 (462)
T 3geh_A 229 IVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVL 308 (462)
T ss_dssp EEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCCCSCSEEE
T ss_pred EEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEE
Confidence 5679999999999987322 12222233345677899999999999876544332 3678999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHH
Q 030931 66 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG 145 (169)
Q Consensus 66 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 145 (169)
+|+|.+++.+... ..|+..+ .+.|+++|+||+|+.+..... . . ... ....+++++||++|.|++++
T Consensus 309 ~VvD~s~~~~~~~-~~i~~~l------~~~piivV~NK~Dl~~~~~~~---~-~--~~~-~~~~~~i~iSAktg~Gi~eL 374 (462)
T 3geh_A 309 LTIDAATGWTTGD-QEIYEQV------KHRPLILVMNKIDLVEKQLIT---S-L--EYP-ENITQIVHTAAAQKQGIDSL 374 (462)
T ss_dssp EEEETTTCSCHHH-HHHHHHH------TTSCEEEEEECTTSSCGGGST---T-C--CCC-TTCCCEEEEBTTTTBSHHHH
T ss_pred EEeccCCCCCHHH-HHHHHhc------cCCcEEEEEECCCCCcchhhH---H-H--HHh-ccCCcEEEEECCCCCCHHHH
Confidence 9999988766554 4455554 236999999999986532211 1 1 000 13456999999999999999
Q ss_pred HHHHHHHHHhhh
Q 030931 146 LDWLASTLKEMR 157 (169)
Q Consensus 146 ~~~l~~~~~~~~ 157 (169)
++++.+.+....
T Consensus 375 ~~~i~~~~~~~~ 386 (462)
T 3geh_A 375 ETAILEIVQTGK 386 (462)
T ss_dssp HHHHHHHHTTSS
T ss_pred HHHHHHHHhccC
Confidence 999999887654
No 146
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.82 E-value=1.5e-20 Score=129.19 Aligned_cols=112 Identities=23% Similarity=0.333 Sum_probs=87.2
Q ss_pred cCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHH---HHHhcCC-CCCCCeEEEEEeCC-CCCCCCCHhHHHhh
Q 030931 44 VGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEF---QAIIKDP-FMLNSVILVFANKQ-DMKGAMTPMEVCEG 118 (169)
Q Consensus 44 ~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~---~~~~~~~-~~~~~piivv~nK~-Dl~~~~~~~~~~~~ 118 (169)
.+||++++.+|..||+++|++|||+|++|.+.++ .+..+ ..+++.. ...+.|++|++||. |++++.+..++.+.
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~ 187 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 187 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHH
Confidence 3489999999999999999999999999987665 44444 4455543 24789999999995 89889999999999
Q ss_pred hCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhhh
Q 030931 119 LGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR 157 (169)
Q Consensus 119 ~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 157 (169)
+++..+ .+.|.+..|||++|+|+.+.++|++..+..++
T Consensus 188 L~L~~l-~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k~ 225 (227)
T 3l82_B 188 LHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESKR 225 (227)
T ss_dssp TTGGGG-CSCEEEEEEETTTCTTHHHHHHHHTTTTTTC-
T ss_pred cCCcCC-CCCEEEEEeECCCCcCHHHHHHHHHHHHHhhc
Confidence 998776 47899999999999999999999998776544
No 147
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.82 E-value=6.5e-22 Score=154.46 Aligned_cols=148 Identities=15% Similarity=0.022 Sum_probs=103.9
Q ss_pred ccccCCCCCceeeeece-----eeeee--eeeEEEEEEEE-CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931 2 LRVKQPYCTSCTLVKFY-----LLFLL--LVRFNVEKVQY-KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR 73 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~-----~~~~~--t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 73 (169)
+++..++|||||++++. ..+.+ |..+....+.. .+.++.+||||||+.|..++..+++.+|++++|+|+++.
T Consensus 9 IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg 88 (537)
T 3izy_P 9 IMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDG 88 (537)
T ss_dssp EEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSC
T ss_pred EECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCC
Confidence 56789999999999872 22223 33333344444 466899999999999999999999999999999999885
Q ss_pred hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCCC-CCceeEEEEeeeccCCCHHHHHHHH
Q 030931 74 ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT---PMEVCEGLGLFDL-KNRKWHIQGTCALKGDGLYEGLDWL 149 (169)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~~~~~l 149 (169)
....... ++..+.. .+.|+++++||+|+.+... ..++.. +..... ....++++++||++|.|++++++++
T Consensus 89 ~~~qt~e-~l~~~~~----~~vPiIVViNKiDl~~~~~~~v~~~l~~-~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I 162 (537)
T 3izy_P 89 VMKQTVE-SIQHAKD----AHVPIVLAINKCDKAEADPEKVKKELLA-YDVVCEDYGGDVQAVHVSALTGENMMALAEAT 162 (537)
T ss_dssp CCHHHHH-HHHHHHT----TTCCEEECCBSGGGTTTSCCSSSSHHHH-TTSCCCCSSSSEEECCCCSSSSCSSHHHHHHH
T ss_pred ccHHHHH-HHHHHHH----cCCcEEEEEecccccccchHHHHHHHHh-hhhhHHhcCCCceEEEEECCCCCCchhHHHHH
Confidence 5444333 3333322 3689999999999975321 112221 111111 1124689999999999999999999
Q ss_pred HHHHHh
Q 030931 150 ASTLKE 155 (169)
Q Consensus 150 ~~~~~~ 155 (169)
...+..
T Consensus 163 ~~l~~~ 168 (537)
T 3izy_P 163 IALAEM 168 (537)
T ss_dssp HHHHTT
T ss_pred HHhhhc
Confidence 987653
No 148
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.82 E-value=3.1e-21 Score=141.70 Aligned_cols=127 Identities=19% Similarity=0.049 Sum_probs=97.3
Q ss_pred eeeeec-----e-eeeeeeeeEEEEEEEE-CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChh-hHHHHHHHH
Q 030931 12 CTLVKF-----Y-LLFLLLVRFNVEKVQY-KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE-RIGKAKQEF 83 (169)
Q Consensus 12 sll~~f-----~-~~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~-~~~~~~~~~ 83 (169)
||+++| . +.+.||+|..+. +.. .+-++++||+ ++++..+++.+++++|++|+|||++++. ++..+..|+
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l 108 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFL 108 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHH
Confidence 687765 4 677899996554 322 2227999999 9999999999999999999999999987 788888998
Q ss_pred HHHhcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931 84 QAIIKDPFMLNSVILVFANKQDMKGAMTP---MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS 151 (169)
Q Consensus 84 ~~~~~~~~~~~~piivv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (169)
..+.. .+.|+++|+||+|+.+.... .+..+.+. .. +++++|||++|.|++++|..+..
T Consensus 109 ~~~~~----~~~piilv~NK~DL~~~~~v~~~~~~~~~~~-----~~-~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 109 VLAEK----NELETVMVINKMDLYDEDDLRKVRELEEIYS-----GL-YPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHT-----TT-SCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHH----CCCCEEEEEeHHHcCCchhHHHHHHHHHHHh-----hh-CcEEEEECCCCcCHHHHHHHhcC
Confidence 87643 47899999999999643221 12222222 11 56999999999999999988753
No 149
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.82 E-value=2.5e-20 Score=147.28 Aligned_cols=149 Identities=15% Similarity=0.110 Sum_probs=104.0
Q ss_pred ccccCCCCCceeeeeceee----------------------eeeeeeEEEEEEEEC-----CEEEEEEEcCCCCCchhhH
Q 030931 2 LRVKQPYCTSCTLVKFYLL----------------------FLLLVRFNVEKVQYK-----NVIFTVWDVGGQEKLRPLW 54 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~----------------------~~~t~~~~~~~~~~~-----~~~~~i~D~~G~~~~~~~~ 54 (169)
+++..++|||||++++... ...|+......+.+. .+.+++||||||..|...+
T Consensus 11 IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF~~ev 90 (600)
T 2ywe_A 11 IIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDFSYEV 90 (600)
T ss_dssp EECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGGGHHHH
T ss_pred EECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhHHHHH
Confidence 4567899999999987221 011222122334332 4899999999999999999
Q ss_pred HhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEe
Q 030931 55 RHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGT 134 (169)
Q Consensus 55 ~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (169)
...++.+|++|+|+|+++..+......|..... .++|+++|+||+|+.+.. .+++.+.+... ......+++++
T Consensus 91 ~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~-----~~ipiIvviNKiDl~~a~-~~~v~~el~~~-lg~~~~~vi~v 163 (600)
T 2ywe_A 91 SRALAACEGALLLIDASQGIEAQTVANFWKAVE-----QDLVIIPVINKIDLPSAD-VDRVKKQIEEV-LGLDPEEAILA 163 (600)
T ss_dssp HHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH-----TTCEEEEEEECTTSTTCC-HHHHHHHHHHT-SCCCGGGCEEC
T ss_pred HHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH-----CCCCEEEEEeccCccccC-HHHHHHHHHHh-hCCCcccEEEE
Confidence 999999999999999998877777666655442 378999999999997653 33322222110 01111248999
Q ss_pred eeccCCCHHHHHHHHHHHHHhhh
Q 030931 135 CALKGDGLYEGLDWLASTLKEMR 157 (169)
Q Consensus 135 Sa~~~~gi~~~~~~l~~~~~~~~ 157 (169)
||++|.|++++|+++.+.+....
T Consensus 164 SAktg~GI~~Lle~I~~~lp~p~ 186 (600)
T 2ywe_A 164 SAKEGIGIEEILEAIVNRIPPPK 186 (600)
T ss_dssp BTTTTBSHHHHHHHHHHHSCCCC
T ss_pred EeecCCCchHHHHHHHHhccccc
Confidence 99999999999999999887654
No 150
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.81 E-value=9.3e-21 Score=147.06 Aligned_cols=146 Identities=15% Similarity=0.063 Sum_probs=100.9
Q ss_pred ccccCCCCCceeeeeceeee--------------eeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEE
Q 030931 2 LRVKQPYCTSCTLVKFYLLF--------------LLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYV 67 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~--------------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 67 (169)
+++..++|||||++++.... ..|+...+..+..+++.+.+|||||++.|...+...++.+|++++|
T Consensus 24 iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilV 103 (482)
T 1wb1_A 24 IFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIV 103 (482)
T ss_dssp EEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEE
T ss_pred EECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhhCCEEEEE
Confidence 45688999999999873222 2455555666777889999999999999988888999999999999
Q ss_pred EECCC---hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC--CC-CCceeEEEEeeeccCCC
Q 030931 68 VDSLD---RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF--DL-KNRKWHIQGTCALKGDG 141 (169)
Q Consensus 68 ~d~~~---~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~Sa~~~~g 141 (169)
+|+++ +.+.+.+. .+ +. .++|+++|+||+|+.+....+++.+.+... .. ....++++++||++|+|
T Consensus 104 vda~~g~~~qt~e~l~----~~-~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~g 175 (482)
T 1wb1_A 104 VDAKEGPKTQTGEHML----IL-DH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFG 175 (482)
T ss_dssp EETTTCSCHHHHHHHH----HH-HH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTT
T ss_pred EecCCCccHHHHHHHH----HH-HH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECcCCCC
Confidence 99987 33333322 22 11 267889999999997532122222111100 00 11146799999999999
Q ss_pred HHHHHHHHHHHHHh
Q 030931 142 LYEGLDWLASTLKE 155 (169)
Q Consensus 142 i~~~~~~l~~~~~~ 155 (169)
++++++++...+..
T Consensus 176 I~~L~~~L~~~i~~ 189 (482)
T 1wb1_A 176 VDELKNLIITTLNN 189 (482)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcC
Confidence 99999999998763
No 151
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.81 E-value=3.4e-20 Score=141.39 Aligned_cols=150 Identities=13% Similarity=-0.003 Sum_probs=93.0
Q ss_pred ccccCCCCCceeeeece--------eeeee--eeeEEEEEEEE---------------C--------CEEEEEEEcCCCC
Q 030931 2 LRVKQPYCTSCTLVKFY--------LLFLL--LVRFNVEKVQY---------------K--------NVIFTVWDVGGQE 48 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~--------~~~~~--t~~~~~~~~~~---------------~--------~~~~~i~D~~G~~ 48 (169)
+++..++|||||++++. .+..+ |++..+..... . ...+.+||||||+
T Consensus 13 iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~ 92 (408)
T 1s0u_A 13 MVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHE 92 (408)
T ss_dssp EESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEECSSHH
T ss_pred EEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEECCCHH
Confidence 45688999999999873 22223 66544433222 1 2789999999999
Q ss_pred CchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC----HhHHHhhhCCCCC
Q 030931 49 KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT----PMEVCEGLGLFDL 124 (169)
Q Consensus 49 ~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~----~~~~~~~~~~~~~ 124 (169)
.|.......+..+|++|+|+|+++........+.+..+.. ....|+++++||+|+.+... .+++.+.+...
T Consensus 93 ~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~---l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~~-- 167 (408)
T 1s0u_A 93 TLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEI---LGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKGT-- 167 (408)
T ss_dssp HHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHH---TTCCCEEEEEECTTSSCTTTTTTHHHHHHHHHTTS--
T ss_pred HHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHH---cCCCeEEEEEEccCCCCHHHHHHHHHHHHHHHhhc--
Confidence 9888888888899999999999853211222222222211 12358999999999976432 23333333211
Q ss_pred CCceeEEEEeeeccCCCHHHHHHHHHHHHHhh
Q 030931 125 KNRKWHIQGTCALKGDGLYEGLDWLASTLKEM 156 (169)
Q Consensus 125 ~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (169)
....++++++||++|.|++++++++...+...
T Consensus 168 ~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~ 199 (408)
T 1s0u_A 168 IAENAPIIPISAHHEANIDVLLKAIQDFIPTP 199 (408)
T ss_dssp TTTTCCEEEC------CHHHHHHHHHHHSCCC
T ss_pred CCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 12356799999999999999999999877654
No 152
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.80 E-value=9.1e-20 Score=140.13 Aligned_cols=142 Identities=16% Similarity=0.071 Sum_probs=97.6
Q ss_pred ccccCCCCCceeeeecee--------------------------------------eeeeeeeEEEEEEEECCEEEEEEE
Q 030931 2 LRVKQPYCTSCTLVKFYL--------------------------------------LFLLLVRFNVEKVQYKNVIFTVWD 43 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~--------------------------------------~~~~t~~~~~~~~~~~~~~~~i~D 43 (169)
+++..++|||||++++.. ....|+...+..+..++..+.|||
T Consensus 22 iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~~~~iiD 101 (439)
T 3j2k_7 22 FIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILD 101 (439)
T ss_pred EEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCeEEEEEE
Confidence 456889999999998711 123566677777888899999999
Q ss_pred cCCCCCchhhHHhhccCCCEEEEEEECCChhh---HH---HHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCC----H
Q 030931 44 VGGQEKLRPLWRHYFNNTDGLIYVVDSLDRER---IG---KAKQEFQAIIKDPFMLNSV-ILVFANKQDMKGAMT----P 112 (169)
Q Consensus 44 ~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~---~~---~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~----~ 112 (169)
||||++|...+..+++.+|++|+|+|+++... |+ .....+..... .+.| +++++||+|+.+... .
T Consensus 102 TPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~----~~v~~iIvviNK~Dl~~~~~~~~~~ 177 (439)
T 3j2k_7 102 APGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT----AGVKHLIVLINKMDDPTVNWSNERY 177 (439)
T ss_pred CCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH----cCCCeEEEEeecCCCcccchHHHHH
Confidence 99999999999999999999999999987532 11 22222222211 2455 999999999864211 1
Q ss_pred hHHHhhh----CCCCC-CCceeEEEEeeeccCCCHHHHHH
Q 030931 113 MEVCEGL----GLFDL-KNRKWHIQGTCALKGDGLYEGLD 147 (169)
Q Consensus 113 ~~~~~~~----~~~~~-~~~~~~~~~~Sa~~~~gi~~~~~ 147 (169)
+++.+.+ ..... ....++++++||++|.|+.++++
T Consensus 178 ~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 178 EECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred HHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 1222211 10001 11256899999999999999665
No 153
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.80 E-value=4.1e-20 Score=142.16 Aligned_cols=150 Identities=11% Similarity=-0.045 Sum_probs=96.5
Q ss_pred ccccCCCCCceeeeeceeee--------eeeeeEEEEEEEECCEEEEEEEcCCCCCchhh------------HHhhccCC
Q 030931 2 LRVKQPYCTSCTLVKFYLLF--------LLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPL------------WRHYFNNT 61 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~--------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------------~~~~~~~~ 61 (169)
|++.+|+|||||++++.... ..|.......+.+.+..+.+|||+|+.+.... ...+++.+
T Consensus 185 ivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~a 264 (439)
T 1mky_A 185 IVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKA 264 (439)
T ss_dssp EECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHHHHC
T ss_pred EECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhC
Confidence 57789999999999873321 22222334556778889999999998543322 13467889
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCCCCCceeEEEEeeeccC
Q 030931 62 DGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKG 139 (169)
Q Consensus 62 ~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 139 (169)
+++++|+|+++..+.... ++...+.. .+.|+++|+||+|+.+... .+++.+.+..........+++++||++|
T Consensus 265 d~vllv~d~~~~~~~~~~--~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g 339 (439)
T 1mky_A 265 DVVVIVLDATQGITRQDQ--RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKG 339 (439)
T ss_dssp SEEEEEEETTTCCCHHHH--HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTT
T ss_pred CEEEEEEeCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCC
Confidence 999999999876555442 22233222 3789999999999865321 2223222211111123356999999999
Q ss_pred CCHHHHHHHHHHHHHhh
Q 030931 140 DGLYEGLDWLASTLKEM 156 (169)
Q Consensus 140 ~gi~~~~~~l~~~~~~~ 156 (169)
.|++++|+.+.+.+.+.
T Consensus 340 ~gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 340 WNIDRMIDAMNLAYASY 356 (439)
T ss_dssp BSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999877654
No 154
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.80 E-value=8.3e-20 Score=144.48 Aligned_cols=147 Identities=16% Similarity=0.062 Sum_probs=101.0
Q ss_pred ccccCCCCCceeeeecee---------eeeeeeeEEEEEEE----------------ECCEEEEEEEcCCCCCchhhHHh
Q 030931 2 LRVKQPYCTSCTLVKFYL---------LFLLLVRFNVEKVQ----------------YKNVIFTVWDVGGQEKLRPLWRH 56 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~---------~~~~t~~~~~~~~~----------------~~~~~~~i~D~~G~~~~~~~~~~ 56 (169)
+++..++|||||++++.. ...++++..+.... +....+++||||||+.|..++..
T Consensus 10 IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~~~~~r 89 (594)
T 1g7s_A 10 VLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLRKR 89 (594)
T ss_dssp EECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSBCS
T ss_pred EECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHHHHHHH
Confidence 567889999999998721 12234444443321 11236999999999999999999
Q ss_pred hccCCCEEEEEEECCC---hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH--------------h------
Q 030931 57 YFNNTDGLIYVVDSLD---RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP--------------M------ 113 (169)
Q Consensus 57 ~~~~~~~ii~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--------------~------ 113 (169)
+++.+|++|+|+|+++ +.+++.+.. +.. .+.|+++++||+|+...... .
T Consensus 90 ~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~----~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~ 161 (594)
T 1g7s_A 90 GGALADLAILIVDINEGFKPQTQEALNI----LRM----YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKL 161 (594)
T ss_dssp SSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH----TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHH
T ss_pred HHhhCCEEEEEEECCCCccHhHHHHHHH----HHH----cCCeEEEEecccccccccccccCCchHHHHHHhHHHHHHHH
Confidence 9999999999999998 556554432 211 37899999999998642110 1
Q ss_pred -----HHHhhh---CCCC-----C--CCceeEEEEeeeccCCCHHHHHHHHHHHHHhh
Q 030931 114 -----EVCEGL---GLFD-----L--KNRKWHIQGTCALKGDGLYEGLDWLASTLKEM 156 (169)
Q Consensus 114 -----~~~~~~---~~~~-----~--~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (169)
++...+ ++.. . ....++++++||++|.|+.++++++...+...
T Consensus 162 ~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~ 219 (594)
T 1g7s_A 162 DTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQY 219 (594)
T ss_dssp HHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcccc
Confidence 111111 1100 0 12456899999999999999999999877643
No 155
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.80 E-value=7e-20 Score=137.50 Aligned_cols=150 Identities=17% Similarity=0.082 Sum_probs=100.3
Q ss_pred ccccCCCCCceeeeece-------eeeeeeeeEEEEEEEECCEEEEEEEcCCCCC---------chhhHHhhccCCCEEE
Q 030931 2 LRVKQPYCTSCTLVKFY-------LLFLLLVRFNVEKVQYKNVIFTVWDVGGQEK---------LRPLWRHYFNNTDGLI 65 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~-------~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~~~~~~ii 65 (169)
|.+.+|+|||||++++. +.+.+|.+.....+..++..+.+|||+|... +...+ ..+..+|+++
T Consensus 184 lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl-~~~~~aD~il 262 (364)
T 2qtf_A 184 IVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTL-SEAKYSDALI 262 (364)
T ss_dssp EECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHH-HGGGGSSEEE
T ss_pred EECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHH-HHHHhCCEEE
Confidence 56789999999999873 2345566666677888889999999999632 22332 2578999999
Q ss_pred EEEECCChh--hHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH---HH----hhhCCCCCCCceeEEEEeee
Q 030931 66 YVVDSLDRE--RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME---VC----EGLGLFDLKNRKWHIQGTCA 136 (169)
Q Consensus 66 ~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~Sa 136 (169)
+|+|++++. .......|.. +++.....+.|+++|+||+|+.+.. ..+ .. ..+. ....+++++||
T Consensus 263 ~VvD~s~~~~~~~~~~~~~~~-~L~~l~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~l~~~l~-----~~~~~~~~~SA 335 (364)
T 2qtf_A 263 LVIDSTFSENLLIETLQSSFE-ILREIGVSGKPILVTLNKIDKINGD-LYKKLDLVEKLSKELY-----SPIFDVIPISA 335 (364)
T ss_dssp EEEETTSCHHHHHHHHHHHHH-HHHHHTCCSCCEEEEEECGGGCCSC-HHHHHHHHHHHHHHHC-----SCEEEEEECBT
T ss_pred EEEECCCCcchHHHHHHHHHH-HHHHhCcCCCCEEEEEECCCCCCch-HHHHHHHHHHHHHHhc-----CCCCcEEEEEC
Confidence 999998865 4444433332 2222223578999999999986532 111 11 1110 12346899999
Q ss_pred ccCCCHHHHHHHHHHHHHhhhcc
Q 030931 137 LKGDGLYEGLDWLASTLKEMRAA 159 (169)
Q Consensus 137 ~~~~gi~~~~~~l~~~~~~~~~~ 159 (169)
+++.|++++++++.+.+.....+
T Consensus 336 ~~g~gi~~L~~~I~~~l~~~~~~ 358 (364)
T 2qtf_A 336 LKRTNLELLRDKIYQLATQLSLE 358 (364)
T ss_dssp TTTBSHHHHHHHHHHHHHHHC--
T ss_pred CCCcCHHHHHHHHHHHhcccCCC
Confidence 99999999999999987776543
No 156
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.80 E-value=4.9e-21 Score=131.67 Aligned_cols=118 Identities=22% Similarity=0.237 Sum_probs=86.1
Q ss_pred ccccCCCCCceeeeeceeeeeee-ee--EEEEEEEECCEEEEEEEcCCCCCchhhHHhhccC----CCEEEEEEECC-Ch
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLL-VR--FNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNN----TDGLIYVVDSL-DR 73 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t-~~--~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~----~~~ii~v~d~~-~~ 73 (169)
+++.+|+|||||++++.....+. .. ......++....+.+|||||++.+...+..+++. ++++++|+|++ +.
T Consensus 53 vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 132 (193)
T 2ged_A 53 IAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDP 132 (193)
T ss_dssp EECCTTSSHHHHHHHHHHSSCC------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCH
T ss_pred EECCCCCCHHHHHHHHhcCCCCcccccCCCceeeeecCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCc
Confidence 56789999999999884332211 11 0111123367789999999999998888888776 89999999999 88
Q ss_pred hhHHHHHHHHHHHhcCC---CCCCCeEEEEEeCCCCCCCCCHhHHHhhh
Q 030931 74 ERIGKAKQEFQAIIKDP---FMLNSVILVFANKQDMKGAMTPMEVCEGL 119 (169)
Q Consensus 74 ~~~~~~~~~~~~~~~~~---~~~~~piivv~nK~Dl~~~~~~~~~~~~~ 119 (169)
.++.....|+..++... ...+.|+++|+||+|+.+.....++.+.+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l 181 (193)
T 2ged_A 133 KKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDAL 181 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHH
Confidence 99999988888876532 22479999999999998766655554443
No 157
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.80 E-value=1.1e-20 Score=146.04 Aligned_cols=142 Identities=17% Similarity=0.155 Sum_probs=94.7
Q ss_pred ccccCCCCCceeeeeceeeeee----eeeEE----EEEEEECCEEEEEEEcCC--------CCCchhhHHhhccCCCEEE
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLL----LVRFN----VEKVQYKNVIFTVWDVGG--------QEKLRPLWRHYFNNTDGLI 65 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~----t~~~~----~~~~~~~~~~~~i~D~~G--------~~~~~~~~~~~~~~~~~ii 65 (169)
|++.+|+|||||+|++...... +.|.+ ...+.+.+..+.+||||| ++.+..++..+++.+|+++
T Consensus 28 lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il 107 (456)
T 4dcu_A 28 IVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVII 107 (456)
T ss_dssp EECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEE
T ss_pred EECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEE
Confidence 5679999999999998544332 22322 333444678999999999 6667777888999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHH
Q 030931 66 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG 145 (169)
Q Consensus 66 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 145 (169)
+|+|..+.. .....++.++++. .+.|+++|+||+|+.+.. .+..+.+.+ . .-.++++||++|.|+.++
T Consensus 108 ~VvD~~~~~--~~~d~~l~~~l~~---~~~pvilV~NK~D~~~~~--~~~~e~~~l---g--~~~~~~iSA~~g~gv~~L 175 (456)
T 4dcu_A 108 FMVNGREGV--TAADEEVAKILYR---TKKPVVLAVNKLDNTEMR--ANIYDFYSL---G--FGEPYPISGTHGLGLGDL 175 (456)
T ss_dssp EEEESSSCS--CHHHHHHHHHHTT---CCSCEEEEEECC-----------CCSGGG---S--SSSEEECCTTTCTTHHHH
T ss_pred EEEeCCCCC--ChHHHHHHHHHHH---cCCCEEEEEECccchhhh--hhHHHHHHc---C--CCceEEeecccccchHHH
Confidence 999986533 3334555566553 478999999999986431 111111111 0 012679999999999999
Q ss_pred HHHHHHHHHh
Q 030931 146 LDWLASTLKE 155 (169)
Q Consensus 146 ~~~l~~~~~~ 155 (169)
++++...+..
T Consensus 176 ~~~i~~~l~~ 185 (456)
T 4dcu_A 176 LDAVAEHFKN 185 (456)
T ss_dssp HHHHHTTGGG
T ss_pred HHHHHhhccc
Confidence 9999887654
No 158
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.80 E-value=1.1e-20 Score=145.09 Aligned_cols=142 Identities=14% Similarity=0.110 Sum_probs=93.4
Q ss_pred ccccCCCCCceeeeecee--------------------------------------eeeeeeeEEEEEEEECCEEEEEEE
Q 030931 2 LRVKQPYCTSCTLVKFYL--------------------------------------LFLLLVRFNVEKVQYKNVIFTVWD 43 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~--------------------------------------~~~~t~~~~~~~~~~~~~~~~i~D 43 (169)
+++..++|||||++++.. ....|+...+..++..++.+.+||
T Consensus 11 iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~~~~iiD 90 (435)
T 1jny_A 11 VIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYFFTIID 90 (435)
T ss_dssp EEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCEEEECC
T ss_pred EEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCeEEEEEE
Confidence 456889999999998732 123566666667888899999999
Q ss_pred cCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHH-------HHHHHhcCCCCCCCeEEEEEeCCCCCCCC-C----
Q 030931 44 VGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQ-------EFQAIIKDPFMLNSVILVFANKQDMKGAM-T---- 111 (169)
Q Consensus 44 ~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~piivv~nK~Dl~~~~-~---- 111 (169)
|||+++|...+..+++.+|++|+|+|+++ .+|+.... .+..... ..-.|+++++||+|+.+.. +
T Consensus 91 tpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~---~~~~~iivviNK~Dl~~~~~~~~~~ 166 (435)
T 1jny_A 91 APGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKT---MGLDQLIVAVNKMDLTEPPYDEKRY 166 (435)
T ss_dssp CSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHH---TTCTTCEEEEECGGGSSSTTCHHHH
T ss_pred CCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHH---cCCCeEEEEEEcccCCCccccHHHH
Confidence 99999999999999999999999999988 66664332 2221111 1224699999999997531 1
Q ss_pred ---HhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHH
Q 030931 112 ---PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD 147 (169)
Q Consensus 112 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 147 (169)
.+++.+.+.........++++++||++|.|+.++++
T Consensus 167 ~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 167 KEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp HHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred HHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 112222221111111236899999999999986543
No 159
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.79 E-value=8.7e-21 Score=147.04 Aligned_cols=142 Identities=19% Similarity=0.102 Sum_probs=99.0
Q ss_pred ccccCCCCCceeeeecee-----e--eeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC--
Q 030931 2 LRVKQPYCTSCTLVKFYL-----L--FLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD-- 72 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~-----~--~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~-- 72 (169)
+++..++|||||++++.. . ...|+.+....+..++..+.+||||||+.|..++...++.+|++++|+|+++
T Consensus 9 IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~ 88 (501)
T 1zo1_I 9 IMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGV 88 (501)
T ss_dssp EEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBS
T ss_pred EECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCc
Confidence 566889999999998722 1 1223333334455567789999999999999999999999999999999987
Q ss_pred -hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC--CCCC--ceeEEEEeeeccCCCHHHHHH
Q 030931 73 -RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF--DLKN--RKWHIQGTCALKGDGLYEGLD 147 (169)
Q Consensus 73 -~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~Sa~~~~gi~~~~~ 147 (169)
+.+.+.+ ..... .+.|+++++||+|+.+.. .+.+...+... .... ..++++++||++|.|++++|+
T Consensus 89 ~~qT~e~l----~~~~~----~~vPiIVviNKiDl~~~~-~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle 159 (501)
T 1zo1_I 89 MPQTIEAI----QHAKA----AQVPVVVAVNKIDKPEAD-PDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLD 159 (501)
T ss_dssp CTTTHHHH----HHHHH----TTCCEEEEEECSSSSTTC-CCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHH
T ss_pred cHHHHHHH----HHHHh----cCceEEEEEEeccccccC-HHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhhh
Confidence 3333332 22211 368999999999997532 12222222110 0111 236899999999999999999
Q ss_pred HHHHH
Q 030931 148 WLAST 152 (169)
Q Consensus 148 ~l~~~ 152 (169)
++...
T Consensus 160 ~I~~~ 164 (501)
T 1zo1_I 160 AILLQ 164 (501)
T ss_dssp HTTTT
T ss_pred hhhhh
Confidence 98753
No 160
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.79 E-value=5.5e-20 Score=135.03 Aligned_cols=144 Identities=13% Similarity=0.011 Sum_probs=96.1
Q ss_pred ccccCCCCCceeeeeceeee--------eeeeeEEEEEEEECCEEEEEEEcCCCC-C--------chhhHHhhccCCCEE
Q 030931 2 LRVKQPYCTSCTLVKFYLLF--------LLLVRFNVEKVQYKNVIFTVWDVGGQE-K--------LRPLWRHYFNNTDGL 64 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~--------~~t~~~~~~~~~~~~~~~~i~D~~G~~-~--------~~~~~~~~~~~~~~i 64 (169)
|++.+|+|||||++++.... ..|.......+..++..+.+|||||+. . +......+++.+|++
T Consensus 13 IvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~v 92 (301)
T 1ega_A 13 IVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELV 92 (301)
T ss_dssp EECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEE
T ss_pred EECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEE
Confidence 56789999999999873221 122222233456688999999999997 2 222335567899999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC-CCHhHHHhhhCCCCCCCcee-EEEEeeeccCCCH
Q 030931 65 IYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA-MTPMEVCEGLGLFDLKNRKW-HIQGTCALKGDGL 142 (169)
Q Consensus 65 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi 142 (169)
++|+|.++ +.....++...+.. .+.|+++++||+|+... ....+....+. ...++ .++++||+++.|+
T Consensus 93 l~Vvd~~~---~~~~~~~i~~~l~~---~~~P~ilvlNK~D~~~~~~~~~~~l~~l~----~~~~~~~~i~iSA~~g~~v 162 (301)
T 1ega_A 93 IFVVEGTR---WTPDDEMVLNKLRE---GKAPVILAVNKVDNVQEKADLLPHLQFLA----SQMNFLDIVPISAETGLNV 162 (301)
T ss_dssp EEEEETTC---CCHHHHHHHHHHHS---SSSCEEEEEESTTTCCCHHHHHHHHHHHH----TTSCCSEEEECCTTTTTTH
T ss_pred EEEEeCCC---CCHHHHHHHHHHHh---cCCCEEEEEECcccCccHHHHHHHHHHHH----HhcCcCceEEEECCCCCCH
Confidence 99999976 22333444444432 36899999999998651 11112222221 11223 6899999999999
Q ss_pred HHHHHHHHHHHHh
Q 030931 143 YEGLDWLASTLKE 155 (169)
Q Consensus 143 ~~~~~~l~~~~~~ 155 (169)
+++++++...+.+
T Consensus 163 ~~l~~~i~~~l~~ 175 (301)
T 1ega_A 163 DTIAAIVRKHLPE 175 (301)
T ss_dssp HHHHHHHHTTCCB
T ss_pred HHHHHHHHHhCCc
Confidence 9999999876654
No 161
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.78 E-value=8.6e-20 Score=138.73 Aligned_cols=150 Identities=15% Similarity=0.021 Sum_probs=102.4
Q ss_pred ccccCCCCCceeeeecee-----------------------eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhc
Q 030931 2 LRVKQPYCTSCTLVKFYL-----------------------LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYF 58 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~-----------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 58 (169)
+++..++|||||++++.. ....|++.....+..++..+.+||||||+.|......++
T Consensus 8 iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~ 87 (397)
T 1d2e_A 8 TIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGT 87 (397)
T ss_dssp EESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHHHHHTS
T ss_pred EEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHHHHhhH
Confidence 456889999999998732 123455555556667889999999999999988888899
Q ss_pred cCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCCH-----hHHHhhhCCCCCCCceeEEE
Q 030931 59 NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKGAMTP-----MEVCEGLGLFDLKNRKWHIQ 132 (169)
Q Consensus 59 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 132 (169)
+.+|++|+|+|+++..... ...++..+.. .++| +++++||+|+.+.... .++.+.+.........++++
T Consensus 88 ~~aD~~ilVvda~~g~~~q-t~e~l~~~~~----~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i 162 (397)
T 1d2e_A 88 APLDGCILVVAANDGPMPQ-TREHLLLARQ----IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPII 162 (397)
T ss_dssp SCCSEEEEEEETTTCSCHH-HHHHHHHHHH----TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEE
T ss_pred hhCCEEEEEEECCCCCCHH-HHHHHHHHHH----cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcccCcEE
Confidence 9999999999998754333 2333333321 2677 7899999999742110 12222221111111245799
Q ss_pred EeeeccCCC----------HHHHHHHHHHHHHhh
Q 030931 133 GTCALKGDG----------LYEGLDWLASTLKEM 156 (169)
Q Consensus 133 ~~Sa~~~~g----------i~~~~~~l~~~~~~~ 156 (169)
++||++|.| +.++++.+...+...
T Consensus 163 ~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p 196 (397)
T 1d2e_A 163 VGSALCALEQRDPELGLKSVQKLLDAVDTYIPVP 196 (397)
T ss_dssp ECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCC
T ss_pred EeehhhcccccCCCccCCcHHHHHHHHHHhCCCC
Confidence 999999775 888888888766543
No 162
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.78 E-value=4.6e-20 Score=140.78 Aligned_cols=146 Identities=12% Similarity=0.019 Sum_probs=100.1
Q ss_pred ccccCCCCCceeeeece--------eeeee--eeeEEEEEEEE------------------C-----CEEEEEEEcCCCC
Q 030931 2 LRVKQPYCTSCTLVKFY--------LLFLL--LVRFNVEKVQY------------------K-----NVIFTVWDVGGQE 48 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~--------~~~~~--t~~~~~~~~~~------------------~-----~~~~~i~D~~G~~ 48 (169)
+++..++|||||++++. ++..+ |+...+..+.+ + ...+.+||||||+
T Consensus 15 iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~ 94 (410)
T 1kk1_A 15 MVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHE 94 (410)
T ss_dssp EECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEECSSHH
T ss_pred EECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEECCChH
Confidence 45688999999999873 22223 66554443332 1 2789999999999
Q ss_pred CchhhHHhhccCCCEEEEEEECCCh----hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC----HhHHHhhhC
Q 030931 49 KLRPLWRHYFNNTDGLIYVVDSLDR----ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT----PMEVCEGLG 120 (169)
Q Consensus 49 ~~~~~~~~~~~~~~~ii~v~d~~~~----~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~----~~~~~~~~~ 120 (169)
.|.......+..+|++|+|+|+++. ++.+.+.. +..+ ...|+++++||+|+.+... .+++.+.+.
T Consensus 95 ~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~-~~~~------~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~ 167 (410)
T 1kk1_A 95 ALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA-LQII------GQKNIIIAQNKIELVDKEKALENYRQIKEFIE 167 (410)
T ss_dssp HHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHH-HHHH------TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHH-HHHc------CCCcEEEEEECccCCCHHHHHHHHHHHHHHHH
Confidence 9888888888899999999999853 33333322 2221 2358999999999875321 122222222
Q ss_pred CCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhh
Q 030931 121 LFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM 156 (169)
Q Consensus 121 ~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (169)
.. ....++++++||++|.|++++++++...+...
T Consensus 168 ~~--~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p 201 (410)
T 1kk1_A 168 GT--VAENAPIIPISALHGANIDVLVKAIEDFIPTP 201 (410)
T ss_dssp TS--TTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred hc--CcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 11 12356799999999999999999999876644
No 163
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.78 E-value=8.1e-20 Score=139.22 Aligned_cols=149 Identities=15% Similarity=0.096 Sum_probs=101.4
Q ss_pred ccccCCCCCceeeeeceee------------------------eeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhh
Q 030931 2 LRVKQPYCTSCTLVKFYLL------------------------FLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHY 57 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~------------------------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~ 57 (169)
+++..++|||||++++... ...|+......+..++..+.+||||||+.|......+
T Consensus 16 iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~ 95 (405)
T 2c78_A 16 TIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITG 95 (405)
T ss_dssp EECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHHHHHHHHH
Confidence 4568899999999987431 1123444455566678999999999999999888899
Q ss_pred ccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCC-Hh----HHHhhhCCCCCCCceeEE
Q 030931 58 FNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKGAMT-PM----EVCEGLGLFDLKNRKWHI 131 (169)
Q Consensus 58 ~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~-~~----~~~~~~~~~~~~~~~~~~ 131 (169)
++.+|++|+|+|+++... .....++..+.. .+.| +++++||+|+.+... .+ ++.+.+.........+++
T Consensus 96 ~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~----~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 170 (405)
T 2c78_A 96 AAQMDGAILVVSAADGPM-PQTREHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPV 170 (405)
T ss_dssp HTTCSSEEEEEETTTCCC-HHHHHHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCE
T ss_pred HHHCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcccccCCCE
Confidence 999999999999987543 344555544432 2577 899999999974211 11 121211111111123579
Q ss_pred EEeeeccCCC------------------HHHHHHHHHHHHHh
Q 030931 132 QGTCALKGDG------------------LYEGLDWLASTLKE 155 (169)
Q Consensus 132 ~~~Sa~~~~g------------------i~~~~~~l~~~~~~ 155 (169)
+++||++|.| +.++++.+...+..
T Consensus 171 i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~ 212 (405)
T 2c78_A 171 IRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPT 212 (405)
T ss_dssp EECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCC
T ss_pred EEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCC
Confidence 9999999987 66777777665543
No 164
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.78 E-value=2.5e-19 Score=137.56 Aligned_cols=116 Identities=16% Similarity=0.044 Sum_probs=78.1
Q ss_pred EEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 030931 27 FNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 106 (169)
Q Consensus 27 ~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl 106 (169)
..+..+...+.++.+||||||+.|...+..+++.+|++|+|+|+++... .....++..+... ...|+++|+||+|+
T Consensus 94 ~~~~~~~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~---~~~~iIvviNK~Dl 169 (434)
T 1zun_B 94 VAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL---GIKHIVVAINKMDL 169 (434)
T ss_dssp CEEEEEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT---TCCEEEEEEECTTT
T ss_pred eeeeEeecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEEcCcC
Confidence 3445566788999999999999999888889999999999999987542 2333343333211 23479999999999
Q ss_pred CCCCC--HhHHHhhhCC--CCCC--CceeEEEEeeeccCCCHHHHH
Q 030931 107 KGAMT--PMEVCEGLGL--FDLK--NRKWHIQGTCALKGDGLYEGL 146 (169)
Q Consensus 107 ~~~~~--~~~~~~~~~~--~~~~--~~~~~~~~~Sa~~~~gi~~~~ 146 (169)
.+... .+++...+.. .... ...++++++||++|.|+.+++
T Consensus 170 ~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~ 215 (434)
T 1zun_B 170 NGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKS 215 (434)
T ss_dssp TTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCC
T ss_pred CcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccc
Confidence 75321 1111111110 0011 234789999999999998853
No 165
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.78 E-value=5.7e-20 Score=142.87 Aligned_cols=140 Identities=14% Similarity=0.080 Sum_probs=92.5
Q ss_pred ccccCCCCCceeeeeceee--------------------------------------eeeeeeEEEEEEEECCEEEEEEE
Q 030931 2 LRVKQPYCTSCTLVKFYLL--------------------------------------FLLLVRFNVEKVQYKNVIFTVWD 43 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~--------------------------------------~~~t~~~~~~~~~~~~~~~~i~D 43 (169)
+++..++|||||++++... ...|+......+..+++.+.|||
T Consensus 38 iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiD 117 (483)
T 3p26_A 38 VLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANFTIVD 117 (483)
T ss_dssp EESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSCEEEEEC
T ss_pred EECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCceEEEEE
Confidence 4568899999999987211 12344455666777899999999
Q ss_pred cCCCCCchhhHHhhccCCCEEEEEEECCChhhHHH------HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHH
Q 030931 44 VGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGK------AKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEV 115 (169)
Q Consensus 44 ~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~------~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~ 115 (169)
|||+++|...+..+++.+|++|+|+|+++...+.. ....+. ++.. ....|+++|+||+|+.+... .+++
T Consensus 118 TPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~-~~~~--~~~~~iIvviNK~Dl~~~~~~~~~~i 194 (483)
T 3p26_A 118 APGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHML-LASS--LGIHNLIIAMNKMDNVDWSQQRFEEI 194 (483)
T ss_dssp CCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHH-HHHH--TTCCCEEEEEECGGGGTTCHHHHHHH
T ss_pred CCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHH-HHHH--cCCCcEEEEEECcCcccchHHHHHHH
Confidence 99999999999999999999999999988643321 122221 2221 12357999999999975221 1222
Q ss_pred HhhhC----CCCCCCceeEEEEeeeccCCCHHH
Q 030931 116 CEGLG----LFDLKNRKWHIQGTCALKGDGLYE 144 (169)
Q Consensus 116 ~~~~~----~~~~~~~~~~~~~~Sa~~~~gi~~ 144 (169)
...+. ........++++++||++|.|+.+
T Consensus 195 ~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 195 KSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 22111 001122357899999999999975
No 166
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.77 E-value=3.4e-19 Score=127.91 Aligned_cols=112 Identities=24% Similarity=0.344 Sum_probs=90.5
Q ss_pred cCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHH---HHhcCC-CCCCCeEEEEEeC-CCCCCCCCHhHHHhh
Q 030931 44 VGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQ---AIIKDP-FMLNSVILVFANK-QDMKGAMTPMEVCEG 118 (169)
Q Consensus 44 ~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~---~~~~~~-~~~~~piivv~nK-~Dl~~~~~~~~~~~~ 118 (169)
.+||+.++..|..||+++|++|||+|++|+++++ ....+. .++++. ...+.|++|++|| .|++++.+..++.+.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~ 272 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 272 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence 4789999999999999999999999999988765 333333 444432 2468999999996 699999999999999
Q ss_pred hCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhhh
Q 030931 119 LGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR 157 (169)
Q Consensus 119 ~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 157 (169)
+++..+ .+.|.+..|||.+|+|+.+.++|++..+..++
T Consensus 273 L~L~~l-~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k~ 310 (312)
T 3l2o_B 273 LHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESKR 310 (312)
T ss_dssp TTGGGG-CSCEEEEEEETTTCTTHHHHHHHHHHHSCC--
T ss_pred cCCccC-CCcEEEEecccCCCcCHHHHHHHHHHHHHhhc
Confidence 998766 47899999999999999999999998876544
No 167
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.77 E-value=6.1e-19 Score=126.84 Aligned_cols=150 Identities=15% Similarity=0.076 Sum_probs=96.7
Q ss_pred ccccCCCCCceeeeecee------eee---eeeeEEEEEEEECCEEEEEEEcCCCCCchh-----------hHHhhccCC
Q 030931 2 LRVKQPYCTSCTLVKFYL------LFL---LLVRFNVEKVQYKNVIFTVWDVGGQEKLRP-----------LWRHYFNNT 61 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~------~~~---~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----------~~~~~~~~~ 61 (169)
|++.+|+|||||++++.. ... .|.......+.+.+..+.+|||||+..+.. ....+++.+
T Consensus 27 lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~ 106 (260)
T 2xtp_A 27 LVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGP 106 (260)
T ss_dssp EEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCC
T ss_pred EECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCC
Confidence 567899999999998722 122 244445556777899999999999865432 223367899
Q ss_pred CEEEEEEECCChhhH-HHHHHHHHHHhcCCCCCCCeEEEEEe-CCCCCCCCCHhH------------HHhhhCCCCCCCc
Q 030931 62 DGLIYVVDSLDRERI-GKAKQEFQAIIKDPFMLNSVILVFAN-KQDMKGAMTPME------------VCEGLGLFDLKNR 127 (169)
Q Consensus 62 ~~ii~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~piivv~n-K~Dl~~~~~~~~------------~~~~~~~~~~~~~ 127 (169)
|++++|+|+++.... ..+..++....... ...|+++++| |+|+.+. .... +...++.. ..
T Consensus 107 d~il~V~d~~~~~~~~~~~~~~l~~~~~~~--~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~~---~~ 180 (260)
T 2xtp_A 107 HVLLLVTQLGRYTSQDQQAAQRVKEIFGED--AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAACGGR---IC 180 (260)
T ss_dssp SEEEEEEETTCCCHHHHHHHHHHHHHHCGG--GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHTTTC---EE
T ss_pred cEEEEEEeCCCCCHHHHHHHHHHHHHhCch--hhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHhCCe---EE
Confidence 999999999863322 23334555543311 1345555555 9999743 2222 22222110 00
Q ss_pred eeEEEEeeeccCCCHHHHHHHHHHHHHhhh
Q 030931 128 KWHIQGTCALKGDGLYEGLDWLASTLKEMR 157 (169)
Q Consensus 128 ~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 157 (169)
.+..+++||+++.|++++|+++.+.+....
T Consensus 181 ~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~ 210 (260)
T 2xtp_A 181 AFNNRAEGSNQDDQVKELMDCIEDLLMEKN 210 (260)
T ss_dssp ECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence 011288999999999999999999887654
No 168
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.75 E-value=4.7e-18 Score=136.87 Aligned_cols=103 Identities=19% Similarity=0.122 Sum_probs=80.0
Q ss_pred ccccCCCCCceeeeecee-------------------------eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHh
Q 030931 2 LRVKQPYCTSCTLVKFYL-------------------------LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRH 56 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~-------------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 56 (169)
|++..++|||||++++.. .+.+|+......+.+.++.+++|||||+..|...+..
T Consensus 17 IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~ 96 (691)
T 1dar_A 17 IAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVER 96 (691)
T ss_dssp EEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTCHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccchHHHHHH
Confidence 466889999999998731 3356666667778889999999999999999999999
Q ss_pred hccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030931 57 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA 109 (169)
Q Consensus 57 ~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~ 109 (169)
+++.+|++|+|+|+++..+......|.. +.. .+.|+++|+||+|+...
T Consensus 97 ~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~----~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 97 SMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK----YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp HHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH----TTCCEEEEEECTTSTTC
T ss_pred HHHHCCEEEEEEECCCCcchhhHHHHHH-HHH----cCCCEEEEEECCCcccC
Confidence 9999999999999998777766555543 322 37899999999999754
No 169
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.75 E-value=1.5e-18 Score=135.92 Aligned_cols=103 Identities=16% Similarity=0.205 Sum_probs=75.1
Q ss_pred ccccCCCCCceeeeeceee--e---------------------------eeeeeEEEEEEEECCEEEEEEEcCCCCCchh
Q 030931 2 LRVKQPYCTSCTLVKFYLL--F---------------------------LLLVRFNVEKVQYKNVIFTVWDVGGQEKLRP 52 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~--~---------------------------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 52 (169)
+++..++|||||++++... . ..|+......+.++++.+++|||||++.|..
T Consensus 18 IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~~df~~ 97 (529)
T 2h5e_A 18 IISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSE 97 (529)
T ss_dssp EEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCSTTCCH
T ss_pred EECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCChhHHH
Confidence 4668899999999987321 0 0112222345777899999999999999999
Q ss_pred hHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030931 53 LWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA 109 (169)
Q Consensus 53 ~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~ 109 (169)
.+..+++.+|++|+|+|+++.... ....++..+ . ..++|+++++||+|+...
T Consensus 98 ~~~~~l~~aD~~IlVvDa~~g~~~-~t~~~~~~~-~---~~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 98 DTYRTLTAVDCCLMVIDAAKGVED-RTRKLMEVT-R---LRDTPILTFMNKLDRDIR 149 (529)
T ss_dssp HHHHGGGGCSEEEEEEETTTCSCH-HHHHHHHHH-T---TTTCCEEEEEECTTSCCS
T ss_pred HHHHHHHHCCEEEEEEeCCccchH-HHHHHHHHH-H---HcCCCEEEEEcCcCCccc
Confidence 899999999999999999875332 223333333 2 247899999999999764
No 170
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.75 E-value=8.2e-20 Score=145.15 Aligned_cols=141 Identities=15% Similarity=0.097 Sum_probs=95.3
Q ss_pred ccccCCCCCceeeeeceee--------------------------------------eeeeeeEEEEEEEECCEEEEEEE
Q 030931 2 LRVKQPYCTSCTLVKFYLL--------------------------------------FLLLVRFNVEKVQYKNVIFTVWD 43 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~--------------------------------------~~~t~~~~~~~~~~~~~~~~i~D 43 (169)
+++..++|||||++++... ...|+......+..+++.+.|||
T Consensus 172 ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~~~~~iiD 251 (611)
T 3izq_1 172 VLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANFTIVD 251 (611)
T ss_dssp EECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSSCEEEEEE
T ss_pred EEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCCceEEEEE
Confidence 4678999999999987321 23355566677888899999999
Q ss_pred cCCCCCchhhHHhhccCCCEEEEEEECCChh---hH---HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHH
Q 030931 44 VGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE---RI---GKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEV 115 (169)
Q Consensus 44 ~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~ 115 (169)
|||+++|...+..+++.+|++|+|+|+++.. ++ ......+..+ .. ....|+++|+||+|+.+... .+++
T Consensus 252 TPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~-~~--lgi~~iIVVvNKiDl~~~~~~~~~ei 328 (611)
T 3izq_1 252 APGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLA-SS--LGIHNLIIAMNKMDNVDWSQQRFEEI 328 (611)
T ss_dssp CCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHH-HT--TTCCEEEEEEECTTTTTTCHHHHHHH
T ss_pred CCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHH-HH--cCCCeEEEEEecccccchhHHHHHHH
Confidence 9999999999999999999999999997632 11 1122222222 21 12356999999999975211 1111
Q ss_pred Hhhh----CCCCCCCceeEEEEeeeccCCCHHHH
Q 030931 116 CEGL----GLFDLKNRKWHIQGTCALKGDGLYEG 145 (169)
Q Consensus 116 ~~~~----~~~~~~~~~~~~~~~Sa~~~~gi~~~ 145 (169)
...+ .........++++++||++|.|+.++
T Consensus 329 ~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 329 KSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 1111 10001122468999999999999876
No 171
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.74 E-value=1.7e-19 Score=130.88 Aligned_cols=148 Identities=12% Similarity=0.105 Sum_probs=80.7
Q ss_pred CccccCCCCCceeeeec------eeee-------eeeeeEEEEEEEE--C--CEEEEEEEcCCCC-------CchhhH--
Q 030931 1 MLRVKQPYCTSCTLVKF------YLLF-------LLLVRFNVEKVQY--K--NVIFTVWDVGGQE-------KLRPLW-- 54 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f------~~~~-------~~t~~~~~~~~~~--~--~~~~~i~D~~G~~-------~~~~~~-- 54 (169)
+|.+.+|+|||||+|++ ...+ .+|++........ + .+++.+|||||.. .+..+.
T Consensus 12 ~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~ 91 (274)
T 3t5d_A 12 MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDY 91 (274)
T ss_dssp EEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHHHH
T ss_pred EEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHHHH
Confidence 46789999999999973 2333 6777766655444 2 3699999999973 334433
Q ss_pred -----HhhccC-------------CCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHH
Q 030931 55 -----RHYFNN-------------TDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVC 116 (169)
Q Consensus 55 -----~~~~~~-------------~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~ 116 (169)
..+++. +|+++++++.+.......-..++..+ .. +.|+++|+||+|+..........
T Consensus 92 i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l-~~----~~pvi~V~nK~D~~~~~e~~~~~ 166 (274)
T 3t5d_A 92 IDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRL-HE----KVNIIPLIAKADTLTPEECQQFK 166 (274)
T ss_dssp HHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHH-TT----TSCEEEEESSGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHH-hc----cCCEEEEEeccCCCCHHHHHHHH
Confidence 344443 78999999776532222223444444 21 78999999999985432222111
Q ss_pred hhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHH
Q 030931 117 EGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 154 (169)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 154 (169)
..+. ..+...+++++++||++++|+.++++++.+.+.
T Consensus 167 ~~i~-~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 167 KQIM-KEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp HHHH-HHHHHTTCCCCCC-----------CHHHHHTCS
T ss_pred HHHH-HHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCC
Confidence 1111 111234556899999999999999999887543
No 172
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.74 E-value=3.8e-19 Score=137.33 Aligned_cols=140 Identities=14% Similarity=0.059 Sum_probs=94.8
Q ss_pred ccccCCCCCceeeeeceee--------------------------------------eeeeeeEEEEEEEECCEEEEEEE
Q 030931 2 LRVKQPYCTSCTLVKFYLL--------------------------------------FLLLVRFNVEKVQYKNVIFTVWD 43 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~--------------------------------------~~~t~~~~~~~~~~~~~~~~i~D 43 (169)
+++..++|||||++++... ...|+...+..++..++.+.+||
T Consensus 12 iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~~~iiD 91 (458)
T 1f60_A 12 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQVTVID 91 (458)
T ss_dssp EEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEEEEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCceEEEEE
Confidence 4568899999999987321 23466666677888899999999
Q ss_pred cCCCCCchhhHHhhccCCCEEEEEEECCChh---hHH---HHHHHHHHHhcCCCCCCC-eEEEEEeCCCCCCCCC--HhH
Q 030931 44 VGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE---RIG---KAKQEFQAIIKDPFMLNS-VILVFANKQDMKGAMT--PME 114 (169)
Q Consensus 44 ~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~-piivv~nK~Dl~~~~~--~~~ 114 (169)
||||+.|...+..+++.+|++|+|+|+++.. +|+ ....++..... .+. ++++|+||+|+.+... .++
T Consensus 92 tPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~----~~v~~iivviNK~Dl~~~~~~~~~~ 167 (458)
T 1f60_A 92 APGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT----LGVRQLIVAVNKMDSVKWDESRFQE 167 (458)
T ss_dssp CCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH----TTCCEEEEEEECGGGGTTCHHHHHH
T ss_pred CCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH----cCCCeEEEEEEccccccCCHHHHHH
Confidence 9999999999999999999999999997642 221 22222222211 245 4999999999973211 111
Q ss_pred HHhhh----CCCCCCCceeEEEEeeeccCCCHHHH
Q 030931 115 VCEGL----GLFDLKNRKWHIQGTCALKGDGLYEG 145 (169)
Q Consensus 115 ~~~~~----~~~~~~~~~~~~~~~Sa~~~~gi~~~ 145 (169)
+...+ .........++++++||++|.|+.++
T Consensus 168 i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 168 IVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp HHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred HHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 11111 10001112367999999999999754
No 173
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.74 E-value=2.1e-19 Score=139.03 Aligned_cols=141 Identities=11% Similarity=0.007 Sum_probs=80.7
Q ss_pred ccccCCCCCceeeeecee--------------------------------------eeeeeeeEEEEEEEECCEEEEEEE
Q 030931 2 LRVKQPYCTSCTLVKFYL--------------------------------------LFLLLVRFNVEKVQYKNVIFTVWD 43 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~--------------------------------------~~~~t~~~~~~~~~~~~~~~~i~D 43 (169)
+++..++|||||++++.. ...+|++..+..+..++.++.|||
T Consensus 48 iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~~~~iiD 127 (467)
T 1r5b_A 48 FIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRFSLLD 127 (467)
T ss_dssp EEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEEEEECC
T ss_pred EEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCeEEEEEE
Confidence 456789999999987621 134566666666777899999999
Q ss_pred cCCCCCchhhHHhhccCCCEEEEEEECCChh---hHH---HHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCC-CH---
Q 030931 44 VGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE---RIG---KAKQEFQAIIKDPFMLNSV-ILVFANKQDMKGAM-TP--- 112 (169)
Q Consensus 44 ~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~-~~--- 112 (169)
||||+.|...+...++.+|++|+|+|+++.. +|+ .....+.... ..++| +++++||+|+.+.. +.
T Consensus 128 tPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~----~~~vp~iivviNK~Dl~~~~~~~~~~ 203 (467)
T 1r5b_A 128 APGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLAR----TQGINHLVVVINKMDEPSVQWSEERY 203 (467)
T ss_dssp CCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHH----HTTCSSEEEEEECTTSTTCSSCHHHH
T ss_pred CCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHH----HcCCCEEEEEEECccCCCccccHHHH
Confidence 9999999998888999999999999998752 222 1111122211 12566 99999999996421 11
Q ss_pred h----HHHhhhCCC-CCC-CceeEEEEeeeccCCCHHHHH
Q 030931 113 M----EVCEGLGLF-DLK-NRKWHIQGTCALKGDGLYEGL 146 (169)
Q Consensus 113 ~----~~~~~~~~~-~~~-~~~~~~~~~Sa~~~~gi~~~~ 146 (169)
+ ++...+... ... ...++++++||++|.|+.+++
T Consensus 204 ~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 204 KECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred HHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 1 122211100 001 125789999999999998765
No 174
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.74 E-value=2.5e-18 Score=125.78 Aligned_cols=113 Identities=17% Similarity=0.113 Sum_probs=75.8
Q ss_pred CEEEEEEEcCCCC-------------CchhhHHhhccCCCEEE-EEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 030931 36 NVIFTVWDVGGQE-------------KLRPLWRHYFNNTDGLI-YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFA 101 (169)
Q Consensus 36 ~~~~~i~D~~G~~-------------~~~~~~~~~~~~~~~ii-~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~ 101 (169)
...+.+|||||.. .+..+...+++.+++++ +|+|.++..+......++..+. ..+.|+++|+
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~----~~~~~~i~V~ 199 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD----PQGQRTIGVI 199 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHC----TTCSSEEEEE
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhC----CCCCeEEEEE
Confidence 4789999999964 34456777888998777 7999977544433334554442 1468999999
Q ss_pred eCCCCCCCCC-HhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHH
Q 030931 102 NKQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL 153 (169)
Q Consensus 102 nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~ 153 (169)
||+|+.+... ..+..... .........+++++||++|.|++++++++....
T Consensus 200 NK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~ 251 (299)
T 2aka_B 200 TKLDLMDEGTDARDVLENK-LLPLRRGYIGVVNRSQKDIDGKKDITAALAAER 251 (299)
T ss_dssp ECGGGSCTTCCCHHHHTTC-SSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred EccccCCCCchHHHHHhCC-cCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence 9999865432 12221110 011111234789999999999999999998743
No 175
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.73 E-value=3e-19 Score=134.12 Aligned_cols=148 Identities=16% Similarity=0.080 Sum_probs=77.1
Q ss_pred CccccCCCCCceeeeec------eeee--------eeeeeEEEEEE--EEC--CEEEEEEEcCCC-------CCchhhHH
Q 030931 1 MLRVKQPYCTSCTLVKF------YLLF--------LLLVRFNVEKV--QYK--NVIFTVWDVGGQ-------EKLRPLWR 55 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f------~~~~--------~~t~~~~~~~~--~~~--~~~~~i~D~~G~-------~~~~~~~~ 55 (169)
+|++..|+|||||++++ ...+ .+|+++....+ ... ...+.+|||||+ +.+..++.
T Consensus 41 ~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~~i~~ 120 (361)
T 2qag_A 41 MVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIIS 120 (361)
T ss_dssp EECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------CCTHH
T ss_pred EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHHHHHH
Confidence 36788999999999983 1111 25666554443 223 358999999999 77777765
Q ss_pred -------hhccCCCEE-----------EEEEECCC-hhhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHH
Q 030931 56 -------HYFNNTDGL-----------IYVVDSLD-RERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEV 115 (169)
Q Consensus 56 -------~~~~~~~~i-----------i~v~d~~~-~~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~ 115 (169)
.+++.++++ +++|++++ ..++.... .++..+ . .+.|+++|+||+|+.+. .++
T Consensus 121 ~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l-~----~~~piIlV~NK~Dl~~~---~ev 192 (361)
T 2qag_A 121 YIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI-H----NKVNIVPVIAKADTLTL---KER 192 (361)
T ss_dssp HHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT-C----S-SCEEEEEECCSSSCH---HHH
T ss_pred HHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh-c----cCCCEEEEEECCCCCCH---HHH
Confidence 666554432 24444443 34454444 344433 2 47899999999998643 222
Q ss_pred Hh--hhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhhh
Q 030931 116 CE--GLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR 157 (169)
Q Consensus 116 ~~--~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 157 (169)
.. ......+...+++++++||+++.| ++.|.++...+.+..
T Consensus 193 ~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~i 235 (361)
T 2qag_A 193 ERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASI 235 (361)
T ss_dssp HHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcC
Confidence 21 011112345567899999999999 899999988887654
No 176
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.73 E-value=1.1e-17 Score=119.56 Aligned_cols=154 Identities=11% Similarity=0.021 Sum_probs=95.4
Q ss_pred ccccCCCCCceeeeeceeee---------eeeeeEEEEEEEECCEEEEEEEcCCC--------CCchhhHHhhc----cC
Q 030931 2 LRVKQPYCTSCTLVKFYLLF---------LLLVRFNVEKVQYKNVIFTVWDVGGQ--------EKLRPLWRHYF----NN 60 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~---------~~t~~~~~~~~~~~~~~~~i~D~~G~--------~~~~~~~~~~~----~~ 60 (169)
|++.+|+|||||+|++.... ..|.......+..++..+.+|||||. +.+......++ ++
T Consensus 26 lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~ 105 (247)
T 3lxw_A 26 LVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPG 105 (247)
T ss_dssp EESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTC
T ss_pred EECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCC
Confidence 67899999999999862211 13344455667778999999999996 44433333333 89
Q ss_pred CCEEEEEEECCChhhH-HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC----CCCCCCceeEEEEee
Q 030931 61 TDGLIYVVDSLDRERI-GKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLG----LFDLKNRKWHIQGTC 135 (169)
Q Consensus 61 ~~~ii~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~~~~~S 135 (169)
+|++++|+|+++.... ..+.+++.+... ....+.|+++++||+|+.+. +.++...... ....+.++..++..+
T Consensus 106 ~d~il~V~d~~~~~~~~~~~~~~l~~~~~-~~~~~~~iilv~nK~Dl~~~-~~~~~l~~~~~~~l~~l~~~~g~~~~~~~ 183 (247)
T 3lxw_A 106 PHALLLVTQLGRFTAQDQQAVRQVRDMFG-EDVLKWMVIVFTRKEDLAGG-SLHDYVSNTENRALRELVAECGGRVCAFD 183 (247)
T ss_dssp CSEEEEEEETTBCCHHHHHHHHHHHHHHC-GGGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHTTTCEEECC
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHHhC-hhhhccEEEEEEchHhcCCC-CHHHHHhhcccHHHHHHHHHcCCeEEEEe
Confidence 9999999999753222 223345555433 12236899999999999653 2222111100 000112222355554
Q ss_pred ecc-----CCCHHHHHHHHHHHHHhhh
Q 030931 136 ALK-----GDGLYEGLDWLASTLKEMR 157 (169)
Q Consensus 136 a~~-----~~gi~~~~~~l~~~~~~~~ 157 (169)
+.. +.|+.++++.+.+.+.+..
T Consensus 184 ~~~~~~~~~~~v~~Ll~~i~~~~~~~~ 210 (247)
T 3lxw_A 184 NRATGREQEAQVEQLLGMVEGLVLEHK 210 (247)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCccccHHHHHHHHHHHHHHHHHcC
Confidence 433 6899999999988887643
No 177
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.72 E-value=4e-18 Score=118.58 Aligned_cols=144 Identities=15% Similarity=0.037 Sum_probs=88.3
Q ss_pred ccccCCCCCceeeeeceeee-----eeeeeEEE--EEEEECCEEEEEEEcCCCCC----------chhhHHhhc---cCC
Q 030931 2 LRVKQPYCTSCTLVKFYLLF-----LLLVRFNV--EKVQYKNVIFTVWDVGGQEK----------LRPLWRHYF---NNT 61 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~-----~~t~~~~~--~~~~~~~~~~~i~D~~G~~~----------~~~~~~~~~---~~~ 61 (169)
|++..|+|||||++++.... .|+.|... ..+..++ .+.+|||||+.. +......++ +.+
T Consensus 31 lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (210)
T 1pui_A 31 FAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSL 109 (210)
T ss_dssp EEECTTSSHHHHHTTTCCC-------------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTE
T ss_pred EECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcc
Confidence 56789999999999886544 56666432 2233333 588999999853 222333444 478
Q ss_pred CEEEEEEECCChhhHHH--HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH----hHHHhhhCCCCCCCceeEEEEee
Q 030931 62 DGLIYVVDSLDRERIGK--AKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP----MEVCEGLGLFDLKNRKWHIQGTC 135 (169)
Q Consensus 62 ~~ii~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~S 135 (169)
+++++++|+++..+... +..|+.. .+.|+++++||+|+...... ......+. . ....+.++++|
T Consensus 110 ~~~~~v~d~~~~~~~~~~~~~~~~~~-------~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~-~--~~~~~~~~~~S 179 (210)
T 1pui_A 110 QGLVVLMDIRHPLKDLDQQMIEWAVD-------SNIAVLVLLTKADKLASGARKAQLNMVREAVL-A--FNGDVQVETFS 179 (210)
T ss_dssp EEEEEEEETTSCCCHHHHHHHHHHHH-------TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHG-G--GCSCEEEEECB
T ss_pred cEEEEEEECCCCCchhHHHHHHHHHH-------cCCCeEEEEecccCCCchhHHHHHHHHHHHHH-h--cCCCCceEEEe
Confidence 99999999987655432 2233321 36899999999997532111 11111111 0 11235689999
Q ss_pred eccCCCHHHHHHHHHHHHHhh
Q 030931 136 ALKGDGLYEGLDWLASTLKEM 156 (169)
Q Consensus 136 a~~~~gi~~~~~~l~~~~~~~ 156 (169)
|+++.|++++++++.+.+.+.
T Consensus 180 al~~~~~~~l~~~l~~~~~~~ 200 (210)
T 1pui_A 180 SLKKQGVDKLRQKLDTWFSEM 200 (210)
T ss_dssp TTTTBSHHHHHHHHHHHHC--
T ss_pred ecCCCCHHHHHHHHHHHHhhc
Confidence 999999999999998876553
No 178
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.72 E-value=4.9e-17 Score=131.20 Aligned_cols=103 Identities=13% Similarity=0.075 Sum_probs=78.7
Q ss_pred ccccCCCCCceeeeecee-------------------------eeeeeeeEEEEEEEECC-------EEEEEEEcCCCCC
Q 030931 2 LRVKQPYCTSCTLVKFYL-------------------------LFLLLVRFNVEKVQYKN-------VIFTVWDVGGQEK 49 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~-------------------------~~~~t~~~~~~~~~~~~-------~~~~i~D~~G~~~ 49 (169)
+++..++|||||++++.. ....|+......+.+++ +.++||||||+..
T Consensus 15 IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liDTPG~~d 94 (704)
T 2rdo_7 15 ISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDTPGHVD 94 (704)
T ss_pred EECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEeCCCccc
Confidence 567899999999998721 12345555556666665 9999999999999
Q ss_pred chhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030931 50 LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA 109 (169)
Q Consensus 50 ~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~ 109 (169)
|...+..+++.+|++|+|+|+++.........| ..... .++|+++++||+|+...
T Consensus 95 f~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~----~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 95 FTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQANK----YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred hHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHHH----cCCCEEEEEeCCCcccc
Confidence 999999999999999999999876554443333 33322 36899999999998654
No 179
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.71 E-value=4.6e-17 Score=131.23 Aligned_cols=103 Identities=14% Similarity=0.078 Sum_probs=78.8
Q ss_pred ccccCCCCCceeeeecee-------------------------eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHh
Q 030931 2 LRVKQPYCTSCTLVKFYL-------------------------LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRH 56 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~-------------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 56 (169)
|++..++|||||++++.. ....|+......+.++++.+++|||||+..|...+..
T Consensus 15 IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~ 94 (693)
T 2xex_A 15 IMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDFTVEVER 94 (693)
T ss_dssp EECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSCCHHHHH
T ss_pred EECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcchHHHHHH
Confidence 466899999999998731 1233444455667788999999999999999999999
Q ss_pred hccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030931 57 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA 109 (169)
Q Consensus 57 ~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~ 109 (169)
+++.+|++++|+|+++..+......|. .+.. .+.|+++|+||+|+...
T Consensus 95 ~l~~aD~~llVvDa~~g~~~~~~~~~~-~~~~----~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 95 SLRVLDGAVTVLDAQSGVEPQTETVWR-QATT----YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp HHHHCSEEEEEEETTTBSCHHHHHHHH-HHHH----TTCCEEEEEECTTSTTC
T ss_pred HHHHCCEEEEEECCCCCCcHHHHHHHH-HHHH----cCCCEEEEEECCCcccc
Confidence 999999999999998876666554443 3322 37899999999999764
No 180
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.71 E-value=2.2e-17 Score=132.61 Aligned_cols=101 Identities=14% Similarity=0.107 Sum_probs=76.7
Q ss_pred ccccCCCCCceeeeeceeee-------------------------eeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHh
Q 030931 2 LRVKQPYCTSCTLVKFYLLF-------------------------LLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRH 56 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~-------------------------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 56 (169)
|++..|+|||||++++.... ..|+......+..+.+.+++|||||++.|...+..
T Consensus 14 IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f~~~~~~ 93 (665)
T 2dy1_A 14 LVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRG 93 (665)
T ss_dssp EEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHHHHHH
T ss_pred EECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccchHHHHHH
Confidence 46688999999999873111 12333455567778999999999999999999999
Q ss_pred hccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030931 57 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 107 (169)
Q Consensus 57 ~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 107 (169)
+++.+|++++|+|+++..... ...++..+.. .+.|+++++||+|+.
T Consensus 94 ~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 94 ALEAADAALVAVSAEAGVQVG-TERAWTVAER----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHHCSEEEEEEETTTCSCHH-HHHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred HHhhcCcEEEEEcCCcccchh-HHHHHHHHHH----ccCCEEEEecCCchh
Confidence 999999999999987654333 2344444432 368999999999987
No 181
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.70 E-value=5.5e-19 Score=140.05 Aligned_cols=138 Identities=17% Similarity=0.143 Sum_probs=72.1
Q ss_pred ccccCCCCCceeeeecee--------------------------------------eeeeeeeEEEEEEEECCEEEEEEE
Q 030931 2 LRVKQPYCTSCTLVKFYL--------------------------------------LFLLLVRFNVEKVQYKNVIFTVWD 43 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~--------------------------------------~~~~t~~~~~~~~~~~~~~~~i~D 43 (169)
+++..++|||||++++.. ....|+...+..+..++..+.|||
T Consensus 182 iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~~i~iiD 261 (592)
T 3mca_A 182 VTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKKIYEIGD 261 (592)
T ss_dssp EECCSSSTHHHHHHHHHHHHHCC------------------------------------------------------CCE
T ss_pred EEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCeEEEEEE
Confidence 467889999999998711 122344455556666788999999
Q ss_pred cCCCCCchhhHHhhccCCCEEEEEEECCChh---hH---HHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCC--H--
Q 030931 44 VGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE---RI---GKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKGAMT--P-- 112 (169)
Q Consensus 44 ~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~--~-- 112 (169)
||||+.|.......++.+|++|+|+|+++.. .+ ......+..+.. .++| +++|+||+|+.+... .
T Consensus 262 TPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~----lgip~iIvviNKiDl~~~~~~~~~~ 337 (592)
T 3mca_A 262 APGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA----LGISEIVVSVNKLDLMSWSEDRFQE 337 (592)
T ss_dssp EESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH----SSCCCEEEEEECGGGGTTCHHHHHH
T ss_pred CCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH----cCCCeEEEEEeccccccccHHHHHH
Confidence 9999999888888899999999999997532 11 111111222211 2454 999999999865211 1
Q ss_pred --hHHHhhh-CCCCCCCceeEEEEeeeccCCCHH
Q 030931 113 --MEVCEGL-GLFDLKNRKWHIQGTCALKGDGLY 143 (169)
Q Consensus 113 --~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~ 143 (169)
.++...+ .........++++++||++|.|+.
T Consensus 338 i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 338 IKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp HHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred HHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 2222222 111112235689999999999998
No 182
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.70 E-value=4.1e-18 Score=141.42 Aligned_cols=149 Identities=19% Similarity=0.115 Sum_probs=97.5
Q ss_pred ccccCCCCCceeeeeceeee-------------------eeeeeEE----EEEEEECCEEEEEEEcCCCCCchhhHHhhc
Q 030931 2 LRVKQPYCTSCTLVKFYLLF-------------------LLLVRFN----VEKVQYKNVIFTVWDVGGQEKLRPLWRHYF 58 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~-------------------~~t~~~~----~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 58 (169)
+++..++|||||++++.... ..+.|++ ...++.++..+.+||||||++|......++
T Consensus 301 IIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~~~mi~ga 380 (1289)
T 3avx_A 301 TIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGA 380 (1289)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHHHHHHHTS
T ss_pred EEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHHHHHHHHH
Confidence 46688999999999873310 0122322 234555789999999999999998888899
Q ss_pred cCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCCH-----hHHHhhhCCCCCCCceeEEE
Q 030931 59 NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKGAMTP-----MEVCEGLGLFDLKNRKWHIQ 132 (169)
Q Consensus 59 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 132 (169)
+.+|++|+|+|+++.... ....++..+.. .++| +++++||+|+.+.... .++.+.+.........++++
T Consensus 381 s~AD~aILVVDAtdGv~~-QTrEhL~ll~~----lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~vp~I 455 (1289)
T 3avx_A 381 AQMDGAILVVAATDGPMP-QTREHILLGRQ----VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIV 455 (1289)
T ss_dssp CCCSEEEEEEETTTCSCT-THHHHHHHHHH----HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTTCCEE
T ss_pred hhCCEEEEEEcCCccCcH-HHHHHHHHHHH----cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccccccceeEE
Confidence 999999999999875322 23334433321 2577 8999999999752111 12222221111112246799
Q ss_pred EeeeccC--------CCHHHHHHHHHHHHHh
Q 030931 133 GTCALKG--------DGLYEGLDWLASTLKE 155 (169)
Q Consensus 133 ~~Sa~~~--------~gi~~~~~~l~~~~~~ 155 (169)
++||++| .|+.++++.+...+..
T Consensus 456 pvSAktG~ng~~~w~eGI~eLleaL~~~Ip~ 486 (1289)
T 3avx_A 456 RGSALKALEGDAEWEAKILELAGFLDSYIPE 486 (1289)
T ss_dssp ECCSTTTTTCCHHHHHHHHHHHHHHHHTSCC
T ss_pred EEEeccCCCCCccccccchhhHhHHhhhcCC
Confidence 9999999 4688888888776543
No 183
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.70 E-value=1.2e-17 Score=118.78 Aligned_cols=153 Identities=12% Similarity=-0.060 Sum_probs=88.7
Q ss_pred ccccCCCCCceeeeecee-----ee----eeeeeEEEEEEEECCEEEEEEEcCCCC-----------CchhhHHhhccCC
Q 030931 2 LRVKQPYCTSCTLVKFYL-----LF----LLLVRFNVEKVQYKNVIFTVWDVGGQE-----------KLRPLWRHYFNNT 61 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~-----~~----~~t~~~~~~~~~~~~~~~~i~D~~G~~-----------~~~~~~~~~~~~~ 61 (169)
|++..|+|||||++++.. .. ..|.......+.+.+..+.+|||||.. .+......+++++
T Consensus 34 lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (239)
T 3lxx_A 34 LVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGP 113 (239)
T ss_dssp EECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCC
T ss_pred EECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCC
Confidence 678999999999997622 12 223334555677789999999999954 2334445566788
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHhcCC-CCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---CCCCCCceeEEEEeeec
Q 030931 62 DGLIYVVDSLDRERIGKAKQEFQAIIKDP-FMLNSVILVFANKQDMKGAMTPMEVCEGLG---LFDLKNRKWHIQGTCAL 137 (169)
Q Consensus 62 ~~ii~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~---~~~~~~~~~~~~~~Sa~ 137 (169)
+++++|+|+++.... ...++..+++.. .....|+++|+||+|+.+....++...... ....+..+..|+.+++.
T Consensus 114 ~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~ 191 (239)
T 3lxx_A 114 HALLLVVPLGRYTEE--EHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGDRYCALNNK 191 (239)
T ss_dssp SEEEEEEETTCCSSH--HHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHSSSEEECCTT
T ss_pred cEEEEEeeCCCCCHH--HHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCCEEEEEECC
Confidence 999999998754332 122232222110 002469999999999865432221110000 00011222236666555
Q ss_pred c-----CCCHHHHHHHHHHHHHhh
Q 030931 138 K-----GDGLYEGLDWLASTLKEM 156 (169)
Q Consensus 138 ~-----~~gi~~~~~~l~~~~~~~ 156 (169)
. ..++.++|..+...+.+.
T Consensus 192 ~~~~~~~~~v~~ll~~i~~~~~~~ 215 (239)
T 3lxx_A 192 ATGAEQEAQRAQLLGLIQRVVREN 215 (239)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCccccHHHHHHHHHHHHHHHHHc
Confidence 3 378999999888877653
No 184
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.67 E-value=5.8e-17 Score=123.31 Aligned_cols=151 Identities=19% Similarity=0.134 Sum_probs=101.9
Q ss_pred ccccCCCCCceeeeeceee-------eeeeeeEEEEEEEECC-EEEEEEEcCCCCCch----hh---HHhhccCCCEEEE
Q 030931 2 LRVKQPYCTSCTLVKFYLL-------FLLLVRFNVEKVQYKN-VIFTVWDVGGQEKLR----PL---WRHYFNNTDGLIY 66 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~-------~~~t~~~~~~~~~~~~-~~~~i~D~~G~~~~~----~~---~~~~~~~~~~ii~ 66 (169)
|++.+|+|||||++.+... ...|...+...+.... ..+.+||+||..... .+ .....+.++.+++
T Consensus 162 LVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~ 241 (416)
T 1udx_A 162 LVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLY 241 (416)
T ss_dssp EECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEE
T ss_pred EECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhE
Confidence 5678999999999987433 2233344444555554 789999999974321 11 1223467999999
Q ss_pred EEECCChhhHHHHHHHHHHHhcCC-CCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHH
Q 030931 67 VVDSLDRERIGKAKQEFQAIIKDP-FMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG 145 (169)
Q Consensus 67 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 145 (169)
++|++ ..++..+..+..++.... .+...|.++++||+|+.......++.+.+ ...++.++++||++++|++++
T Consensus 242 vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l-----~~~g~~vi~iSA~~g~gi~eL 315 (416)
T 1udx_A 242 VLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADAL-----AREGLAVLPVSALTGAGLPAL 315 (416)
T ss_dssp EEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHH-----HTTTSCEEECCTTTCTTHHHH
T ss_pred EeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHH-----HhcCCeEEEEECCCccCHHHH
Confidence 99998 566666666665554321 12367999999999986541112222222 123456999999999999999
Q ss_pred HHHHHHHHHhhhc
Q 030931 146 LDWLASTLKEMRA 158 (169)
Q Consensus 146 ~~~l~~~~~~~~~ 158 (169)
++++.+.+.+...
T Consensus 316 ~~~i~~~l~~~~~ 328 (416)
T 1udx_A 316 KEALHALVRSTPP 328 (416)
T ss_dssp HHHHHHHHHTSCC
T ss_pred HHHHHHHHHhccc
Confidence 9999999987553
No 185
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.63 E-value=5.3e-16 Score=114.30 Aligned_cols=116 Identities=19% Similarity=0.170 Sum_probs=72.3
Q ss_pred CEEEEEEEcCCCCC-------------chhhHHhhccCCCEEEEEEECCChhhH-HHHHHHHHHHhcCCCCCCCeEEEEE
Q 030931 36 NVIFTVWDVGGQEK-------------LRPLWRHYFNNTDGLIYVVDSLDRERI-GKAKQEFQAIIKDPFMLNSVILVFA 101 (169)
Q Consensus 36 ~~~~~i~D~~G~~~-------------~~~~~~~~~~~~~~ii~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~piivv~ 101 (169)
...+.+|||||... +......+++.+|++++|+|.++.... .....+...+ .. .+.|+++|+
T Consensus 130 ~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~-~~---~~~~~i~v~ 205 (315)
T 1jwy_B 130 VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV-DP---EGKRTIGVI 205 (315)
T ss_dssp SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH-CS---SCSSEEEEE
T ss_pred CCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh-CC---CCCcEEEEE
Confidence 46799999999764 445667788999999999997433211 1111223333 22 368999999
Q ss_pred eCCCCCCCCC-HhHHHhhhCCCCCCCceeEEEEeeecc---CCCHHHHHHHHHHHHHhh
Q 030931 102 NKQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCALK---GDGLYEGLDWLASTLKEM 156 (169)
Q Consensus 102 nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~gi~~~~~~l~~~~~~~ 156 (169)
||+|+.+... ..+..... ........+++..+|+.+ +.|+.++++.+...+...
T Consensus 206 NK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~ 263 (315)
T 1jwy_B 206 TKLDLMDKGTDAMEVLTGR-VIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKNH 263 (315)
T ss_dssp ECTTSSCSSCCCHHHHTTS-SSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTC
T ss_pred cCcccCCcchHHHHHHhCC-CccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhCC
Confidence 9999865432 12221110 001112223455566777 899999999998888764
No 186
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.61 E-value=5.3e-16 Score=111.72 Aligned_cols=105 Identities=14% Similarity=-0.009 Sum_probs=71.4
Q ss_pred ccccCCCCCceeeeeceeee--------eeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhcc---------CCCEE
Q 030931 2 LRVKQPYCTSCTLVKFYLLF--------LLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFN---------NTDGL 64 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~--------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~---------~~~~i 64 (169)
+++..|+|||||++++.... ..|.......+..++..+.+|||||++.+......+++ +++++
T Consensus 41 lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~i 120 (262)
T 3def_A 41 VLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVL 120 (262)
T ss_dssp EEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEE
T ss_pred EECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEE
Confidence 56799999999999873221 22344555667788999999999999887655444443 78999
Q ss_pred EEEEECCChhhHHHH-HHHHHHHhcCCC-CCCCeEEEEEeCCCCC
Q 030931 65 IYVVDSLDRERIGKA-KQEFQAIIKDPF-MLNSVILVFANKQDMK 107 (169)
Q Consensus 65 i~v~d~~~~~~~~~~-~~~~~~~~~~~~-~~~~piivv~nK~Dl~ 107 (169)
++|+|++... +... ..|+..+.+... ....|+++|+||+|+.
T Consensus 121 l~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 121 LYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS 164 (262)
T ss_dssp EEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred EEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence 9999986543 3322 244444432111 1124999999999985
No 187
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.58 E-value=6.9e-16 Score=124.43 Aligned_cols=115 Identities=17% Similarity=0.175 Sum_probs=78.8
Q ss_pred EEEEEEEcCCCCC---chhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--C
Q 030931 37 VIFTVWDVGGQEK---LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--T 111 (169)
Q Consensus 37 ~~~~i~D~~G~~~---~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~ 111 (169)
..+.+|||||... ....+..+++.+|++++|+|+++..+......|...+ .. .+.|+++|+||+|+.... +
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l-~~---~~~~iiiVlNK~Dl~~~~~~~ 249 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI-KG---RGLTVFFLVNAWDQVRESLID 249 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT-TT---SCCCEEEEEECGGGGGGGCSS
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH-Hh---hCCCEEEEEECcccccccccC
Confidence 4689999999654 3455667889999999999998887777665554433 21 267899999999985321 1
Q ss_pred Hh---H-------HHh----hhCCCCCC-----CceeEEEEeeec--------------cCCCHHHHHHHHHHHHHhh
Q 030931 112 PM---E-------VCE----GLGLFDLK-----NRKWHIQGTCAL--------------KGDGLYEGLDWLASTLKEM 156 (169)
Q Consensus 112 ~~---~-------~~~----~~~~~~~~-----~~~~~~~~~Sa~--------------~~~gi~~~~~~l~~~~~~~ 156 (169)
.+ + +.. .+.. ... ....+++++||+ ++.|+.++++++...+...
T Consensus 250 ~ee~e~l~~~~~~i~~~~~~~l~~-~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~~ 326 (695)
T 2j69_A 250 PDDVEELQASENRLRQVFNANLAE-YCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTRE 326 (695)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHGG-GGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH-hhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHHh
Confidence 11 1 111 1110 001 123458999999 9999999999999877654
No 188
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.58 E-value=3.9e-16 Score=117.23 Aligned_cols=110 Identities=17% Similarity=0.213 Sum_probs=73.1
Q ss_pred CEEEEEEEcCCCCCc-------------hhhHHhhccCCCEEEEEEECCChhhH-HHHHHHHHHHhcCCCCCCCeEEEEE
Q 030931 36 NVIFTVWDVGGQEKL-------------RPLWRHYFNNTDGLIYVVDSLDRERI-GKAKQEFQAIIKDPFMLNSVILVFA 101 (169)
Q Consensus 36 ~~~~~i~D~~G~~~~-------------~~~~~~~~~~~~~ii~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~piivv~ 101 (169)
...+.+|||||..++ ..+...+++.++++|+|+|..+.... .....++..+ ...+.|+++|+
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~----~~~~~~~i~V~ 210 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREV----DPSGDRTFGVL 210 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHS----CTTCTTEEEEE
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHh----cccCCCEEEEE
Confidence 456899999998876 66777899999999999987654322 2222333333 22467999999
Q ss_pred eCCCCCCCCC-HhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHH
Q 030931 102 NKQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL 153 (169)
Q Consensus 102 nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~ 153 (169)
||+|+.+... ..+.... .....+.+|+++|+.++.++++.+.......
T Consensus 211 nK~Dl~~~~~~~~~~~~~----~~~~~~~~~~~v~~~s~~~i~~~~~~~~~~~ 259 (360)
T 3t34_A 211 TKIDLMDKGTDAVEILEG----RSFKLKYPWVGVVNRSQADINKNVDMIAARK 259 (360)
T ss_dssp ECGGGCCTTCCSHHHHTT----SSSCCSSCCEEECCCCHHHHHTTCCHHHHHH
T ss_pred eCCccCCCcccHHHHHcC----ccccccCCeEEEEECChHHhccCCCHHHHHH
Confidence 9999865322 1222221 1233446799999999998887766544433
No 189
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.57 E-value=1.1e-14 Score=114.45 Aligned_cols=78 Identities=15% Similarity=0.222 Sum_probs=63.1
Q ss_pred EEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 030931 27 FNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 106 (169)
Q Consensus 27 ~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl 106 (169)
.....+.+++++++|.|||||..|.......++-+|++|+|+|+...-.-.....| +.+.+ .++|+++++||+|.
T Consensus 90 s~~~~~~~~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~----~~lp~i~fINK~Dr 164 (548)
T 3vqt_A 90 TSVMQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRM----RATPVMTFVNKMDR 164 (548)
T ss_dssp TTEEEEEETTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHH----TTCCEEEEEECTTS
T ss_pred eceEEEEECCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHH----hCCceEEEEecccc
Confidence 34566888999999999999999999999999999999999999775444443334 33333 37999999999998
Q ss_pred CCC
Q 030931 107 KGA 109 (169)
Q Consensus 107 ~~~ 109 (169)
..+
T Consensus 165 ~~a 167 (548)
T 3vqt_A 165 EAL 167 (548)
T ss_dssp CCC
T ss_pred hhc
Confidence 754
No 190
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.53 E-value=2.7e-15 Score=112.41 Aligned_cols=111 Identities=16% Similarity=0.106 Sum_probs=68.3
Q ss_pred CEEEEEEEcCCCC-------------CchhhHHhhccCCCEEEE-EEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 030931 36 NVIFTVWDVGGQE-------------KLRPLWRHYFNNTDGLIY-VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFA 101 (169)
Q Consensus 36 ~~~~~i~D~~G~~-------------~~~~~~~~~~~~~~~ii~-v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~ 101 (169)
...+.+|||||.. .+..+...|++.++.+|+ |.|.+....-.....++..+. ..+.|+++|+
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~----~~~~~~i~V~ 204 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVD----PQGQRTIGVI 204 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHC----TTCTTEEEEE
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhC----cCCCceEEEe
Confidence 4779999999963 234566677777766655 455543221112223444441 2478999999
Q ss_pred eCCCCCCCCC-HhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931 102 NKQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS 151 (169)
Q Consensus 102 nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (169)
||+|+.+... ..++..... ........+++++||+++.|++++++++..
T Consensus 205 NK~Dl~~~~~~~~~~~~~~~-~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 205 TKLDLMDEGTDARDVLENKL-LPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp ECGGGSCTTCCCHHHHTTCS-SCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred ccccccCcchhHHHHHhCCc-ccccCCceEEEeCCcccccccccHHHHHHH
Confidence 9999865422 122222111 111112246889999999999999999876
No 191
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.52 E-value=3.8e-15 Score=107.67 Aligned_cols=106 Identities=14% Similarity=-0.045 Sum_probs=68.7
Q ss_pred ccccCCCCCceeeeeceeee--------eeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHH-------hh--ccCCCEE
Q 030931 2 LRVKQPYCTSCTLVKFYLLF--------LLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWR-------HY--FNNTDGL 64 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~--------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~-------~~--~~~~~~i 64 (169)
+++..|+|||||++++.... ..|.......+...+..+.+|||||++.+..... .+ .+.+|++
T Consensus 44 vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~i 123 (270)
T 1h65_A 44 VMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVL 123 (270)
T ss_dssp EEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEE
T ss_pred EECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEE
Confidence 57799999999999873221 1122233445667899999999999977643221 11 3479999
Q ss_pred EEEEECCChhhHHHH-HHHHHHHhcCCC-CCCCeEEEEEeCCCCCC
Q 030931 65 IYVVDSLDRERIGKA-KQEFQAIIKDPF-MLNSVILVFANKQDMKG 108 (169)
Q Consensus 65 i~v~d~~~~~~~~~~-~~~~~~~~~~~~-~~~~piivv~nK~Dl~~ 108 (169)
++|+|++.. ++... ..|+..+.+... ....|+++|+||+|+..
T Consensus 124 l~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~ 168 (270)
T 1h65_A 124 LYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP 168 (270)
T ss_dssp EEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred EEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence 999998653 33322 345554433211 01269999999999864
No 192
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.52 E-value=6.7e-16 Score=115.72 Aligned_cols=110 Identities=15% Similarity=0.095 Sum_probs=72.5
Q ss_pred CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh-
Q 030931 35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM- 113 (169)
Q Consensus 35 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~- 113 (169)
.++.+.||||||... ......+.+|++++|+|....+.+..+ . ....+.|+++|+||+|+.+.....
T Consensus 170 ~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l--------~-~~~~~~p~ivVlNK~Dl~~~~~~~~ 237 (355)
T 3p32_A 170 AGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGI--------K-KGVLELADIVVVNKADGEHHKEARL 237 (355)
T ss_dssp TTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTC--------C-TTSGGGCSEEEEECCCGGGHHHHHH
T ss_pred CCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHH--------H-HhHhhcCCEEEEECCCCcChhHHHH
Confidence 468899999999543 233456899999999998765433221 1 112357999999999985432211
Q ss_pred ---HHHhhhCCCCCC--CceeEEEEeeeccCCCHHHHHHHHHHHHHhh
Q 030931 114 ---EVCEGLGLFDLK--NRKWHIQGTCALKGDGLYEGLDWLASTLKEM 156 (169)
Q Consensus 114 ---~~~~~~~~~~~~--~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (169)
++...+...... ..+.+++++||++|+|++++++++.+.+...
T Consensus 238 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~~ 285 (355)
T 3p32_A 238 AARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQVL 285 (355)
T ss_dssp HHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 222221100000 1235699999999999999999999887663
No 193
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.51 E-value=6.2e-16 Score=111.05 Aligned_cols=115 Identities=10% Similarity=-0.066 Sum_probs=68.5
Q ss_pred EEEEEEEcCCCCCchhhHH------hhccCCCEEEEEEECCChhhHHHHH---HHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030931 37 VIFTVWDVGGQEKLRPLWR------HYFNNTDGLIYVVDSLDRERIGKAK---QEFQAIIKDPFMLNSVILVFANKQDMK 107 (169)
Q Consensus 37 ~~~~i~D~~G~~~~~~~~~------~~~~~~~~ii~v~d~~~~~~~~~~~---~~~~~~~~~~~~~~~piivv~nK~Dl~ 107 (169)
+.+.+|||||+........ ..+.. +++++++|.....+..... .+...... ..+.|+++|+||+|+.
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~---~~~~p~~iv~NK~D~~ 184 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDL---RLGATTIPALNKVDLL 184 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH---HHTSCEEEEECCGGGC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc---ccCCCeEEEEeccccc
Confidence 5799999999876543221 24566 8999999875433222222 11111111 1267999999999986
Q ss_pred CCCCHhHHHhhhCC-C----C------------------CC--CceeEEEEeeeccCCCHHHHHHHHHHHHHh
Q 030931 108 GAMTPMEVCEGLGL-F----D------------------LK--NRKWHIQGTCALKGDGLYEGLDWLASTLKE 155 (169)
Q Consensus 108 ~~~~~~~~~~~~~~-~----~------------------~~--~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 155 (169)
......++.+.+.. . . .. ....+++++||++++|++++++++.+.+..
T Consensus 185 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 185 SEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp CHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 43211111111000 0 0 00 112358999999999999999999987754
No 194
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.50 E-value=1e-14 Score=119.78 Aligned_cols=101 Identities=15% Similarity=0.076 Sum_probs=77.9
Q ss_pred ccccCCCCCceeeeeceee-----------------------eeeeeeEEEEEEEEC----------------CEEEEEE
Q 030931 2 LRVKQPYCTSCTLVKFYLL-----------------------FLLLVRFNVEKVQYK----------------NVIFTVW 42 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~-----------------------~~~t~~~~~~~~~~~----------------~~~~~i~ 42 (169)
|++..++|||||++++... ...|+......+.+. ++.+++|
T Consensus 24 IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~li 103 (842)
T 1n0u_A 24 VIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLI 103 (842)
T ss_dssp EECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEEEEEE
T ss_pred EECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCceEEEE
Confidence 4567899999999987211 122444444444443 7899999
Q ss_pred EcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030931 43 DVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 107 (169)
Q Consensus 43 D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 107 (169)
||||+.+|...+..+++.+|++|+|+|+++..++.....|.... . .+.|+++++||+|+.
T Consensus 104 DTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 104 DSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G----ERIKPVVVINKVDRA 163 (842)
T ss_dssp CCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H----TTCEEEEEEECHHHH
T ss_pred ECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H----cCCCeEEEEECCCcc
Confidence 99999999999999999999999999999887777765554433 2 368999999999985
No 195
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.47 E-value=1.3e-15 Score=111.66 Aligned_cols=149 Identities=14% Similarity=0.135 Sum_probs=73.5
Q ss_pred CccccCCCCCceeeeeceee-eee-------------eeeEEEEEEEE----CCEEEEEEEcCCC-------CCchhhHH
Q 030931 1 MLRVKQPYCTSCTLVKFYLL-FLL-------------LVRFNVEKVQY----KNVIFTVWDVGGQ-------EKLRPLWR 55 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f~~~-~~~-------------t~~~~~~~~~~----~~~~~~i~D~~G~-------~~~~~~~~ 55 (169)
+|++..|+|||||++++... ..| |.+.....+.. ....+++|||+|. +++..+..
T Consensus 22 ~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~ 101 (301)
T 2qnr_A 22 MVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIIS 101 (301)
T ss_dssp EEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CTTHHH
T ss_pred EEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHHHHHH
Confidence 46789999999999984221 222 22222222222 3578999999998 56665554
Q ss_pred -------hhccC-------------CCEEEEEEECCChhhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH
Q 030931 56 -------HYFNN-------------TDGLIYVVDSLDRERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME 114 (169)
Q Consensus 56 -------~~~~~-------------~~~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~ 114 (169)
.+++. +++++++.+.+. .+++... .++..+ . .+.|+++|+||+|+.+......
T Consensus 102 ~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~l~~l-~----~~~~iilV~~K~Dl~~~~e~~~ 175 (301)
T 2qnr_A 102 YIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAFMKAI-H----NKVNIVPVIAKADTLTLKERER 175 (301)
T ss_dssp HHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHHHHHH-T----TTSCEEEEECCGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHHHHHH-H----hcCCEEEEEEeCCCCCHHHHHH
Confidence 44443 234555554432 1232222 333333 1 3579999999999864211110
Q ss_pred HHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhhh
Q 030931 115 VCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR 157 (169)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 157 (169)
..+ .....+...+++++++||+++ |++++|.++.+.+.+..
T Consensus 176 ~~~-~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~ 216 (301)
T 2qnr_A 176 LKK-RILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASI 216 (301)
T ss_dssp HHH-HHHHHHHHTTCCCCCCC----------CHHHHHHHHTTC
T ss_pred HHH-HHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCC
Confidence 001 111112333567999999999 99999999999887643
No 196
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.47 E-value=1.7e-15 Score=114.95 Aligned_cols=72 Identities=21% Similarity=0.100 Sum_probs=40.8
Q ss_pred ccccCCCCCceeeeeceeee-------eeeeeEEEEEE--E-------------------EC---CEEEEEEEcCCCCC-
Q 030931 2 LRVKQPYCTSCTLVKFYLLF-------LLLVRFNVEKV--Q-------------------YK---NVIFTVWDVGGQEK- 49 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~-------~~t~~~~~~~~--~-------------------~~---~~~~~i~D~~G~~~- 49 (169)
+++.+++|||||+|++.... ..|...+.... . .. .+.+++|||||+..
T Consensus 5 ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG~~~~ 84 (397)
T 1wxq_A 5 VVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGLVPG 84 (397)
T ss_dssp EEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-----
T ss_pred EECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCCcccc
Confidence 56789999999999873322 12332222211 1 11 36899999999854
Q ss_pred ---chhhHH---hhccCCCEEEEEEECCCh
Q 030931 50 ---LRPLWR---HYFNNTDGLIYVVDSLDR 73 (169)
Q Consensus 50 ---~~~~~~---~~~~~~~~ii~v~d~~~~ 73 (169)
...+.. .+++.+|++++|+|+++.
T Consensus 85 a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 85 AHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp ----------CCCSSTTCSEEEEEEETTCC
T ss_pred hhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 222333 346899999999999875
No 197
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.47 E-value=9.4e-15 Score=107.21 Aligned_cols=95 Identities=18% Similarity=0.131 Sum_probs=72.8
Q ss_pred CCCchhhHHhhccCCCEEEEEEECCChh-hHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCC
Q 030931 47 QEKLRPLWRHYFNNTDGLIYVVDSLDRE-RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT---PMEVCEGLGLF 122 (169)
Q Consensus 47 ~~~~~~~~~~~~~~~~~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---~~~~~~~~~~~ 122 (169)
++++..+.+.+++++|++++|+|++++. ++..+..|+..+.. .++|+++|+||+|+.+... .++....+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~--- 138 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWISIY--- 138 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHH---
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHHHH---
Confidence 7778888888999999999999999886 88888888876633 4799999999999864311 11121211
Q ss_pred CCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931 123 DLKNRKWHIQGTCALKGDGLYEGLDWLA 150 (169)
Q Consensus 123 ~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 150 (169)
...+++++++||++|.|+++++..+.
T Consensus 139 --~~~g~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 139 --RDAGYDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp --HHTTCEEEECCTTTCTTHHHHHHHTT
T ss_pred --HHCCCeEEEEECCCCCCHHHHHhhcc
Confidence 12245799999999999999998764
No 198
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.47 E-value=4.4e-15 Score=104.00 Aligned_cols=107 Identities=14% Similarity=0.121 Sum_probs=66.6
Q ss_pred CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHh
Q 030931 36 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPM 113 (169)
Q Consensus 36 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~ 113 (169)
...+.+|||+|+.... ..+...++.+++|+|+++.... ...+... .+.|+++|+||+|+.+. ...+
T Consensus 108 ~~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~~--~~~~~~~-------~~~~~iiv~NK~Dl~~~~~~~~~ 175 (221)
T 2wsm_A 108 DCDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDDV--VEKHPEI-------FRVADLIVINKVALAEAVGADVE 175 (221)
T ss_dssp TCSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTTH--HHHCHHH-------HHTCSEEEEECGGGHHHHTCCHH
T ss_pred CCCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcchh--hhhhhhh-------hhcCCEEEEecccCCcchhhHHH
Confidence 4578899999952111 1111357899999998764321 1111111 14789999999998532 2334
Q ss_pred HHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhhh
Q 030931 114 EVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR 157 (169)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 157 (169)
++...+... ...++++++||++|.|++++++++.+.+....
T Consensus 176 ~~~~~~~~~---~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~ 216 (221)
T 2wsm_A 176 KMKADAKLI---NPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS 216 (221)
T ss_dssp HHHHHHHHH---CTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred HHHHHHHHh---CCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence 443333110 12357999999999999999999998876544
No 199
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.46 E-value=2.4e-14 Score=106.75 Aligned_cols=108 Identities=12% Similarity=0.060 Sum_probs=67.5
Q ss_pred CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh-
Q 030931 35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM- 113 (169)
Q Consensus 35 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~- 113 (169)
+++.+.+|||||...... ...+.+|++++|+|.+....+..+.. .. .+.|.++|+||+|+.+.....
T Consensus 147 ~~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~------~~~p~ivv~NK~Dl~~~~~~~~ 214 (341)
T 2p67_A 147 AGYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL------MEVADLIVINKDDGDNHTNVAI 214 (341)
T ss_dssp TTCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH------HHHCSEEEECCCCTTCHHHHHH
T ss_pred cCCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh------hcccCEEEEECCCCCChHHHHH
Confidence 467899999999765433 34689999999999865432111100 00 146889999999986432222
Q ss_pred ---HHHhhhCCCCC--CCceeEEEEeeeccCCCHHHHHHHHHHHHH
Q 030931 114 ---EVCEGLGLFDL--KNRKWHIQGTCALKGDGLYEGLDWLASTLK 154 (169)
Q Consensus 114 ---~~~~~~~~~~~--~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 154 (169)
++...+..... .....+++++||++|.|++++++++.+.+.
T Consensus 215 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 215 ARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 22221111000 111346899999999999999999998765
No 200
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.43 E-value=1.7e-14 Score=115.34 Aligned_cols=149 Identities=13% Similarity=0.120 Sum_probs=102.4
Q ss_pred ccCCCCCceeeeec-------ee------------------eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhc
Q 030931 4 VKQPYCTSCTLVKF-------YL------------------LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYF 58 (169)
Q Consensus 4 ~~~~~~Ktsll~~f-------~~------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 58 (169)
.--++|||||..++ .. +..-|+......+.++++++++.|||||..|.......+
T Consensus 9 aHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~Ev~raL 88 (638)
T 3j25_A 9 AHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAEVYRSL 88 (638)
T ss_dssp CCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHHHHHHHH
Confidence 34689999999864 00 112233344456788999999999999999999999999
Q ss_pred cCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCCC-----------
Q 030931 59 NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT---PMEVCEGLGLFDL----------- 124 (169)
Q Consensus 59 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---~~~~~~~~~~~~~----------- 124 (169)
+-+|++|+|+|+...-.-.. ...++.+.+ .++|.++++||+|...... .+++.+.++....
T Consensus 89 ~~~DgavlVVDa~~GV~~qT-~~v~~~a~~----~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 163 (638)
T 3j25_A 89 SVLDGAILLISAKDGVQAQT-RILFHALRK----MGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNV 163 (638)
T ss_dssp TTCSEEECCEESSCTTCSHH-HHHHHHHHH----HTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCCCSCGGG
T ss_pred HHhCEEEEEEeCCCCCcHHH-HHHHHHHHH----cCCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccceeEeeccc
Confidence 99999999999976433222 222333322 2689999999999875432 2233332221100
Q ss_pred ---------------------------------------------CCceeEEEEeeeccCCCHHHHHHHHHHHHHhhh
Q 030931 125 ---------------------------------------------KNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR 157 (169)
Q Consensus 125 ---------------------------------------------~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~ 157 (169)
...-.|++..||+++.|+..+++.+...+....
T Consensus 164 ~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~p~p~ 241 (638)
T 3j25_A 164 CVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKFYSST 241 (638)
T ss_dssp CCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHSCCCSG
T ss_pred cccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhccccCcc
Confidence 001246888999999999999999998776654
No 201
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.40 E-value=2.1e-13 Score=101.96 Aligned_cols=109 Identities=16% Similarity=0.100 Sum_probs=65.4
Q ss_pred CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---
Q 030931 35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--- 111 (169)
Q Consensus 35 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--- 111 (169)
+++.+.++||+|.... .......+|.+++|+|+++......+. ..+ -..|.++|+||+|+.+...
T Consensus 165 ~~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~---~~i------l~~~~ivVlNK~Dl~~~~~~~~ 232 (349)
T 2www_A 165 AGYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIK---RGI------IEMADLVAVTKSDGDLIVPARR 232 (349)
T ss_dssp TTCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC---------------------CCSCSEEEECCCSGGGHHHHHH
T ss_pred CCCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhH---HHH------HhcCCEEEEeeecCCCchhHHH
Confidence 4677899999996321 344567899999999997643222111 111 2458899999999853211
Q ss_pred -HhHHHhhhCCCCC--CCceeEEEEeeeccCCCHHHHHHHHHHHHHh
Q 030931 112 -PMEVCEGLGLFDL--KNRKWHIQGTCALKGDGLYEGLDWLASTLKE 155 (169)
Q Consensus 112 -~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 155 (169)
..++...+..... .....+++.+||++|+|++++++++.+.+..
T Consensus 233 ~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 233 IQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp HHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 1122222221110 0113468999999999999999999987643
No 202
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.39 E-value=1e-12 Score=98.23 Aligned_cols=71 Identities=14% Similarity=0.069 Sum_probs=51.9
Q ss_pred ccccCCCCCceeeeeceee-------eeeeeeEEEEEEEECC-----------------EEEEEEEcCCCCCchh----h
Q 030931 2 LRVKQPYCTSCTLVKFYLL-------FLLLVRFNVEKVQYKN-----------------VIFTVWDVGGQEKLRP----L 53 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~-------~~~t~~~~~~~~~~~~-----------------~~~~i~D~~G~~~~~~----~ 53 (169)
|++.+++|||||++++... +.+|++.+...+.+++ ..+++|||||+.++.+ +
T Consensus 7 IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~~~gl 86 (363)
T 1jal_A 7 IVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASKGEGL 86 (363)
T ss_dssp EECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHHHGGG
T ss_pred EECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccccchH
Confidence 5678999999999987432 2346665554555543 6899999999987642 2
Q ss_pred ---HHhhccCCCEEEEEEECCC
Q 030931 54 ---WRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 54 ---~~~~~~~~~~ii~v~d~~~ 72 (169)
...+++.+|++++|+|+++
T Consensus 87 ~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 87 GNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp TCCHHHHHHTCSEEEEEEECSC
T ss_pred HHHHHHHHHhcCeEEEEEecCC
Confidence 2335789999999999986
No 203
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.38 E-value=2.8e-14 Score=108.65 Aligned_cols=146 Identities=13% Similarity=0.062 Sum_probs=66.1
Q ss_pred CccccCCCCCceeeeeceeeee-------------eeeeEEEEEE--EE--CCEEEEEEEcCCCCCch-------hh---
Q 030931 1 MLRVKQPYCTSCTLVKFYLLFL-------------LLVRFNVEKV--QY--KNVIFTVWDVGGQEKLR-------PL--- 53 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f~~~~~-------------~t~~~~~~~~--~~--~~~~~~i~D~~G~~~~~-------~~--- 53 (169)
+|++..|+|||||++.+..... +|.+.....+ .. ....+.+||++|..... .+
T Consensus 35 ~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~ 114 (418)
T 2qag_C 35 MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDY 114 (418)
T ss_dssp EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHHHHHH
T ss_pred EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHHHHHH
Confidence 3678999999999997633222 2333222221 11 23579999999986541 11
Q ss_pred ---------------HHhhccCCCEEEEEEECCCh-hhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHH
Q 030931 54 ---------------WRHYFNNTDGLIYVVDSLDR-ERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVC 116 (169)
Q Consensus 54 ---------------~~~~~~~~~~ii~v~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~ 116 (169)
...+++++++.+++|+.... .++.... .|+..+. .+.|+++|+||+|+... .++.
T Consensus 115 i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~-----~~v~iIlVinK~Dll~~---~ev~ 186 (418)
T 2qag_C 115 IDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH-----EKVNIIPLIAKADTLTP---EECQ 186 (418)
T ss_dssp HHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT-----TTSEEEEEEESTTSSCH---HHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh-----ccCcEEEEEEcccCccH---HHHH
Confidence 11234455554455544332 3444443 5666552 36899999999998542 2322
Q ss_pred hh--hCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHH
Q 030931 117 EG--LGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 154 (169)
Q Consensus 117 ~~--~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 154 (169)
.. .....+...+++++++||+++.++.++|..+...++
T Consensus 187 ~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~iP 226 (418)
T 2qag_C 187 QFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 226 (418)
T ss_dssp HHHHHHHHHHHHHTCCCCCCC-----------------CC
T ss_pred HHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhCC
Confidence 10 001111233566899999999999998887776443
No 204
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.35 E-value=3.8e-12 Score=103.05 Aligned_cols=69 Identities=20% Similarity=0.152 Sum_probs=55.1
Q ss_pred CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030931 36 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA 109 (169)
Q Consensus 36 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~ 109 (169)
++.+++.|||||-.|.......++-+|++|+|+|+...-.......| +...+ .++|.++++||+|....
T Consensus 84 ~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~-~~a~~----~~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 84 NYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVW-RQANK----YGVPRIVYVNKMDRQGA 152 (709)
T ss_dssp CEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHH----HTCCEEEEEECSSSTTC
T ss_pred CEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHH-HHHHH----cCCCeEEEEccccccCc
Confidence 69999999999999999999999999999999999765443333333 33322 37899999999998653
No 205
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.33 E-value=1.9e-13 Score=107.68 Aligned_cols=68 Identities=21% Similarity=0.229 Sum_probs=52.4
Q ss_pred EEEEEEcCCCCC-----------chhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 030931 38 IFTVWDVGGQEK-----------LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 106 (169)
Q Consensus 38 ~~~i~D~~G~~~-----------~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl 106 (169)
.+.+|||||... +...+..+++.+|++++|+|+++.........++..+.. .+.|+++|+||+|+
T Consensus 155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~pvilVlNK~Dl 230 (550)
T 2qpt_A 155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG----HEDKIRVVLNKADM 230 (550)
T ss_dssp HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT----CGGGEEEEEECGGG
T ss_pred CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh----cCCCEEEEEECCCc
Confidence 689999999875 456677788999999999999875444555566655522 36899999999998
Q ss_pred CCC
Q 030931 107 KGA 109 (169)
Q Consensus 107 ~~~ 109 (169)
.+.
T Consensus 231 ~~~ 233 (550)
T 2qpt_A 231 VET 233 (550)
T ss_dssp SCH
T ss_pred cCH
Confidence 653
No 206
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.28 E-value=4.3e-12 Score=102.58 Aligned_cols=110 Identities=16% Similarity=0.120 Sum_probs=69.3
Q ss_pred EEEEEEEcCCCCC-------------chhhHHhhc-cCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 030931 37 VIFTVWDVGGQEK-------------LRPLWRHYF-NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFAN 102 (169)
Q Consensus 37 ~~~~i~D~~G~~~-------------~~~~~~~~~-~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~n 102 (169)
..+.++||||... ...+...++ +.+|++++|+|++....-.+...++..+ . ..+.|+++|+|
T Consensus 150 ~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L-~---~~g~pvIlVlN 225 (772)
T 3zvr_A 150 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEV-D---PQGQRTIGVIT 225 (772)
T ss_dssp CSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHH-C---TTCSSEEEEEE
T ss_pred CceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHH-H---hcCCCEEEEEe
Confidence 3578999999654 122333444 5789999999997643323322334444 2 13689999999
Q ss_pred CCCCCCCCCH-hHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931 103 KQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS 151 (169)
Q Consensus 103 K~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 151 (169)
|+|+.+.... ..+... ..........+++.+||++|.|++++++.+..
T Consensus 226 KiDlv~~~~~~~~il~~-~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 226 KLDLMDEGTDARDVLEN-KLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp CTTSSCTTCCSHHHHTT-CSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred CcccCCcchhhHHHHHH-HhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 9998654221 122211 01111122346889999999999999999886
No 207
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.27 E-value=9.1e-12 Score=93.47 Aligned_cols=71 Identities=11% Similarity=-0.009 Sum_probs=48.3
Q ss_pred ccccCCCCCceeeeeceee-------eeeeeeEEEEEEEE---------------------CCEEEEEEEcCCCCCch--
Q 030931 2 LRVKQPYCTSCTLVKFYLL-------FLLLVRFNVEKVQY---------------------KNVIFTVWDVGGQEKLR-- 51 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~-------~~~t~~~~~~~~~~---------------------~~~~~~i~D~~G~~~~~-- 51 (169)
|.+.+++|||||++++... +..|+..+...... .+..+++|||||+....
T Consensus 6 IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 85 (368)
T 2dby_A 6 IVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVKGAHK 85 (368)
T ss_dssp EECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCCCCCS
T ss_pred EECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccccccc
Confidence 4678999999999976321 12244333333222 24679999999987642
Q ss_pred -----hhHHhhccCCCEEEEEEECCC
Q 030931 52 -----PLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 52 -----~~~~~~~~~~~~ii~v~d~~~ 72 (169)
.....+++.+|++++|+|+++
T Consensus 86 ~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 86 GEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp SSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cchHHHHHHHHHHhCCEEEEEEECCC
Confidence 223346799999999999975
No 208
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.27 E-value=2e-11 Score=91.74 Aligned_cols=103 Identities=11% Similarity=0.002 Sum_probs=71.3
Q ss_pred ccccCCCCCceeeeec-------eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCch-------hhHHhhccCCCEEEEE
Q 030931 2 LRVKQPYCTSCTLVKF-------YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLR-------PLWRHYFNNTDGLIYV 67 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f-------~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~~~ii~v 67 (169)
|.+.|.+|||||+|++ .+.++.|...+...+.+.+.++++.||||.-... ...-..++.||++++|
T Consensus 77 ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~v 156 (376)
T 4a9a_A 77 FVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFII 156 (376)
T ss_dssp EECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEE
T ss_pred EECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccc
Confidence 4678999999999976 4456677778888899999999999999954321 1223456789999999
Q ss_pred EECCChhh-HHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 030931 68 VDSLDRER-IGKAKQEFQAIIKDPFMLNSVILVFANKQDM 106 (169)
Q Consensus 68 ~d~~~~~~-~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl 106 (169)
+|.+++.. ++.+...+..+ .......|.+++.||.|.
T Consensus 157 vD~~~p~~~~~~i~~EL~~~--~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 157 LDVNKPLHHKQIIEKELEGV--GIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp EETTSHHHHHHHHHHHHHHT--TEEETCCCCCEEEEECSS
T ss_pred cccCccHHHHHHHHHHHHHh--hHhhccCChhhhhhHhhh
Confidence 99987632 23333333332 112235677777888875
No 209
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.26 E-value=5.5e-16 Score=109.00 Aligned_cols=59 Identities=17% Similarity=0.162 Sum_probs=41.1
Q ss_pred CCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHh
Q 030931 94 NSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE 155 (169)
Q Consensus 94 ~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 155 (169)
..|.++|+||+|+.+. ...+++...+.. .....+++++||++|.|++++|+++.+.+..
T Consensus 164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 164 KTADLIVINKIDLADAVGADIKKMENDAKR---INPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp TTCSEEEEECGGGHHHHTCCHHHHHHHHHH---HCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hcCCEEEEeccccCchhHHHHHHHHHHHHH---hCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 3577999999998542 233333332210 0123579999999999999999999987754
No 210
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.20 E-value=2.2e-12 Score=96.97 Aligned_cols=115 Identities=17% Similarity=0.147 Sum_probs=74.2
Q ss_pred CCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCCC
Q 030931 46 GQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM-TPMEVCEGLGLFDL 124 (169)
Q Consensus 46 G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~-~~~~~~~~~~~~~~ 124 (169)
.+++|......+.+.++++++|+|++++. ..|...+.+. ..+.|+++|+||+|+.+.. ..+++.+.+.. ..
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~--~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~-~~ 126 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRF--VGNNKVLLVGNKADLIPKSVKHDKVKHWMRY-SA 126 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHH--SSSSCEEEEEECGGGSCTTSCHHHHHHHHHH-HH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHH--hCCCcEEEEEEChhcCCcccCHHHHHHHHHH-HH
Confidence 56788999999999999999999998853 2332222221 1378999999999996432 22222221110 00
Q ss_pred CCcee---EEEEeeeccCCCHHHHHHHHHHHHHhhh--ccccccccccC
Q 030931 125 KNRKW---HIQGTCALKGDGLYEGLDWLASTLKEMR--AAGYSSVGTSS 168 (169)
Q Consensus 125 ~~~~~---~~~~~Sa~~~~gi~~~~~~l~~~~~~~~--~~~~~~~~~~s 168 (169)
...++ +++++||++|.|++++++.+........ ..+.+..|+||
T Consensus 127 ~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~~~~~i~~vG~~nvGKSt 175 (368)
T 3h2y_A 127 KQLGLKPEDVFLISAAKGQGIAELADAIEYYRGGKDVYVVGCTNVGKST 175 (368)
T ss_dssp HHTTCCCSEEEECCTTTCTTHHHHHHHHHHHHTTSCEEEEEBTTSSHHH
T ss_pred HHcCCCcccEEEEeCCCCcCHHHHHhhhhhhcccceEEEecCCCCChhH
Confidence 11222 6899999999999999999977654332 12455566655
No 211
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.20 E-value=9.3e-12 Score=92.58 Aligned_cols=108 Identities=12% Similarity=0.063 Sum_probs=65.0
Q ss_pred CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---
Q 030931 35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--- 111 (169)
Q Consensus 35 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--- 111 (169)
.+..+.++||+|...-. ......+|.+++++|....+....+.... ...|.++++||+|+.....
T Consensus 146 ~~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~i---------~~~~~ivvlNK~Dl~~~~~~s~ 213 (337)
T 2qm8_A 146 AGFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGI---------FELADMIAVNKADDGDGERRAS 213 (337)
T ss_dssp TTCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTH---------HHHCSEEEEECCSTTCCHHHHH
T ss_pred CCCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHHH---------hccccEEEEEchhccCchhHHH
Confidence 57889999999975422 23457899999999986432211111001 1346677889999743211
Q ss_pred --HhHHHhhhCCCCCC--CceeEEEEeeeccCCCHHHHHHHHHHHHH
Q 030931 112 --PMEVCEGLGLFDLK--NRKWHIQGTCALKGDGLYEGLDWLASTLK 154 (169)
Q Consensus 112 --~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~ 154 (169)
.+++...+...... ....+++.+||+++.|++++++.+.+...
T Consensus 214 ~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 214 AAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 12222222211100 11235888999999999999999988765
No 212
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.15 E-value=5.5e-12 Score=94.92 Aligned_cols=116 Identities=14% Similarity=0.113 Sum_probs=74.8
Q ss_pred CCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCC
Q 030931 45 GGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM-TPMEVCEGLGLFD 123 (169)
Q Consensus 45 ~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~-~~~~~~~~~~~~~ 123 (169)
..++.|......+++.++++++|+|+++.++ .....+...+ .+.|+++|+||+|+.+.. ..+.+.+.+.. .
T Consensus 56 ~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~--s~~~~l~~~l-----~~~piilV~NK~DLl~~~~~~~~~~~~l~~-~ 127 (369)
T 3ec1_A 56 LDDDDFLSMLHRIGESKALVVNIVDIFDFNG--SFIPGLPRFA-----ADNPILLVGNKADLLPRSVKYPKLLRWMRR-M 127 (369)
T ss_dssp ---CHHHHHHHHHHHHCCEEEEEEETTCSGG--GCCSSHHHHC-----TTSCEEEEEECGGGSCTTCCHHHHHHHHHH-H
T ss_pred CCHHHHHHHHHHhhccCcEEEEEEECCCCCC--chhhHHHHHh-----CCCCEEEEEEChhcCCCccCHHHHHHHHHH-H
Confidence 3588899999999999999999999998763 1111122222 378999999999996542 22222221110 0
Q ss_pred CCCce---eEEEEeeeccCCCHHHHHHHHHHHHHhhhc--cccccccccC
Q 030931 124 LKNRK---WHIQGTCALKGDGLYEGLDWLASTLKEMRA--AGYSSVGTSS 168 (169)
Q Consensus 124 ~~~~~---~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~--~~~~~~~~~s 168 (169)
....+ .+++.+||++|.|++++++.+......... .+.+..|+||
T Consensus 128 ~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~~~~i~~vG~~nvGKSt 177 (369)
T 3ec1_A 128 AEELGLCPVDVCLVSAAKGIGMAKVMEAINRYREGGDVYVVGCTNVGKST 177 (369)
T ss_dssp HHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHHTTSCEEEECCTTSSHHH
T ss_pred HHHcCCCcccEEEEECCCCCCHHHHHHHHHhhcccCcEEEEcCCCCchHH
Confidence 01122 268999999999999999999876644322 2455666665
No 213
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.08 E-value=4.8e-11 Score=86.64 Aligned_cols=103 Identities=17% Similarity=0.109 Sum_probs=67.6
Q ss_pred EEEcCCCCC-chhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhh
Q 030931 41 VWDVGGQEK-LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL 119 (169)
Q Consensus 41 i~D~~G~~~-~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~ 119 (169)
|-..|||.. ........++.+|+++.|+|+.++.+... ..+..++ .++|.++|+||+|+.+....+...+.+
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~ 75 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHF 75 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCC--HHHHHHH-----CCCCEEEEEECcccCCHHHHHHHHHHH
Confidence 456789873 44556677899999999999988766542 1233332 478999999999996521112222222
Q ss_pred CCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHh
Q 030931 120 GLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE 155 (169)
Q Consensus 120 ~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~ 155 (169)
+..+++++++||+++.|+.++++.+.+.+.+
T Consensus 76 -----~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~ 106 (282)
T 1puj_A 76 -----ENQGIRSLSINSVNGQGLNQIVPASKEILQE 106 (282)
T ss_dssp -----HTTTCCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred -----HhcCCcEEEEECCCcccHHHHHHHHHHHHHH
Confidence 1223468999999999999999988887764
No 214
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.88 E-value=6.2e-10 Score=84.03 Aligned_cols=73 Identities=12% Similarity=0.085 Sum_probs=45.0
Q ss_pred ccccCCCCCceeeeeceee-------eeeeeeEEEEEEEEC-----------------CEEEEEEEcCCCCCchh-----
Q 030931 2 LRVKQPYCTSCTLVKFYLL-------FLLLVRFNVEKVQYK-----------------NVIFTVWDVGGQEKLRP----- 52 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~-------~~~t~~~~~~~~~~~-----------------~~~~~i~D~~G~~~~~~----- 52 (169)
|++.+++|||||++++... +.+|+..+...+... ...+++|||||.....+
T Consensus 27 IVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as~~~gl 106 (396)
T 2ohf_A 27 IVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQGL 106 (396)
T ss_dssp EECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----------
T ss_pred EECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccchhhHH
Confidence 5678999999999987433 344555555555442 34599999999876543
Q ss_pred --hHHhhccCCCEEEEEEECCChh
Q 030931 53 --LWRHYFNNTDGLIYVVDSLDRE 74 (169)
Q Consensus 53 --~~~~~~~~~~~ii~v~d~~~~~ 74 (169)
.+..+++.+|++++|+|+++.+
T Consensus 107 g~~~l~~ir~aD~Il~VvD~~~~~ 130 (396)
T 2ohf_A 107 GNAFLSHISACDGIFHLTRAFEDD 130 (396)
T ss_dssp CCHHHHHHHTSSSEEEEEEC----
T ss_pred HHHHHHHHHhcCeEEEEEecCCCc
Confidence 4567789999999999997543
No 215
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.64 E-value=7.4e-10 Score=79.59 Aligned_cols=94 Identities=10% Similarity=-0.026 Sum_probs=58.6
Q ss_pred cCCCCCc-hhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC
Q 030931 44 VGGQEKL-RPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF 122 (169)
Q Consensus 44 ~~G~~~~-~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~ 122 (169)
.|||... .......++.+|+++.|+|+.++.+..... +. + . ++|.++|+||+|+.+....+...+.+.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l-----l-~k~~iivlNK~DL~~~~~~~~~~~~~~-- 72 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F-----S-RKETIILLNKVDIADEKTTKKWVEFFK-- 72 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C-----T-TSEEEEEEECGGGSCHHHHHHHHHHHH--
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h-----c-CCCcEEEEECccCCCHHHHHHHHHHHH--
Confidence 4777642 345666789999999999998775443210 11 1 2 789999999999965311122222221
Q ss_pred CCCCceeEEEEeeeccCCCHHHHHHHHHHH
Q 030931 123 DLKNRKWHIQGTCALKGDGLYEGLDWLAST 152 (169)
Q Consensus 123 ~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 152 (169)
..++++ .+||+++.|++++++.+...
T Consensus 73 ---~~g~~v-~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 73 ---KQGKRV-ITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp ---HTTCCE-EECCTTSCHHHHHHHHCCCT
T ss_pred ---HcCCeE-EEECCCCcCHHHHHHHHHHh
Confidence 123456 99999999999988876543
No 216
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.43 E-value=2e-07 Score=72.56 Aligned_cols=110 Identities=15% Similarity=0.130 Sum_probs=64.1
Q ss_pred CCEEEEEEEcCCCCCch-hhHHh---h--ccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeE-EEEEeCCCCC
Q 030931 35 KNVIFTVWDVGGQEKLR-PLWRH---Y--FNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVI-LVFANKQDMK 107 (169)
Q Consensus 35 ~~~~~~i~D~~G~~~~~-~~~~~---~--~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi-ivv~nK~Dl~ 107 (169)
.++.+.|+||||..... ..+.. . ...+|.+++|+|......... ....+.+ ..|+ .+|+||+|..
T Consensus 182 ~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~---~a~~~~~-----~~~i~gvVlNK~D~~ 253 (504)
T 2j37_W 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEA---QAKAFKD-----KVDVASVIVTKLDGH 253 (504)
T ss_dssp TTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHH---HHHHHHH-----HHCCCCEEEECTTSC
T ss_pred CCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHH---HHHHHHh-----hcCceEEEEeCCccc
Confidence 56789999999986432 11111 1 227899999999976433211 1222211 2565 8999999986
Q ss_pred CCCC-HhHHHhhhCCCC--------CCC-c-eeEEEEeeeccCCC-HHHHHHHHHHH
Q 030931 108 GAMT-PMEVCEGLGLFD--------LKN-R-KWHIQGTCALKGDG-LYEGLDWLAST 152 (169)
Q Consensus 108 ~~~~-~~~~~~~~~~~~--------~~~-~-~~~~~~~Sa~~~~g-i~~~~~~l~~~ 152 (169)
.... ...+...++... ... . ..+...+|+..|.| +.++++++.+.
T Consensus 254 ~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 254 AKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred cchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 4322 112223332210 000 0 01235689999999 99999988765
No 217
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.24 E-value=5.9e-07 Score=67.89 Aligned_cols=71 Identities=18% Similarity=0.159 Sum_probs=49.9
Q ss_pred ccccCCCCCceeeeeceee--------eeeeeeEEEEEEEECC-----------------EEEEEEEcCCCCC-------
Q 030931 2 LRVKQPYCTSCTLVKFYLL--------FLLLVRFNVEKVQYKN-----------------VIFTVWDVGGQEK------- 49 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~--------~~~t~~~~~~~~~~~~-----------------~~~~i~D~~G~~~------- 49 (169)
|++.+|+|||||++.+... +..|+..+...+...+ ..+.+||+||...
T Consensus 25 iVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~s~~e~ 104 (392)
T 1ni3_A 25 IVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVG 104 (392)
T ss_dssp EEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCCSSSS
T ss_pred EECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCCcHHHH
Confidence 5678999999999987442 1224444444555443 5789999999432
Q ss_pred chhhHHhhccCCCEEEEEEECCC
Q 030931 50 LRPLWRHYFNNTDGLIYVVDSLD 72 (169)
Q Consensus 50 ~~~~~~~~~~~~~~ii~v~d~~~ 72 (169)
+.......++.+|++++|+|+.+
T Consensus 105 L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 105 LGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp SCHHHHHHHTTCSEEEEEEECCC
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 34455667789999999999864
No 218
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.18 E-value=4.6e-07 Score=67.64 Aligned_cols=84 Identities=18% Similarity=0.110 Sum_probs=53.0
Q ss_pred hccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCCCCCceeEEEE
Q 030931 57 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT---PMEVCEGLGLFDLKNRKWHIQG 133 (169)
Q Consensus 57 ~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 133 (169)
...++|.+++|.......+...+..++...-. .++|+++|+||+|+.+... .+++...+ ...+++++.
T Consensus 127 i~anvD~v~iv~a~~P~~~~~~i~r~L~~a~~----~~~~~iivlNK~DL~~~~~~~~~~~~~~~y-----~~~G~~v~~ 197 (358)
T 2rcn_A 127 IAANIDQIVIVSAILPELSLNIIDRYLVGCET----LQVEPLIVLNKIDLLDDEGMDFVNEQMDIY-----RNIGYRVLM 197 (358)
T ss_dssp EEECCCEEEEEEESTTTCCHHHHHHHHHHHHH----HTCEEEEEEECGGGCCHHHHHHHHHHHHHH-----HTTTCCEEE
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHh----cCCCEEEEEECccCCCchhHHHHHHHHHHH-----HhCCCcEEE
Confidence 46789999988765433334444444433211 3678899999999965321 11122222 233456899
Q ss_pred eeeccCCCHHHHHHHH
Q 030931 134 TCALKGDGLYEGLDWL 149 (169)
Q Consensus 134 ~Sa~~~~gi~~~~~~l 149 (169)
+||.++.|++++...+
T Consensus 198 ~Sa~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 198 VSSHTQDGLKPLEEAL 213 (358)
T ss_dssp CBTTTTBTHHHHHHHH
T ss_pred EecCCCcCHHHHHHhc
Confidence 9999999999887653
No 219
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.13 E-value=7.1e-07 Score=65.37 Aligned_cols=87 Identities=14% Similarity=0.106 Sum_probs=57.2
Q ss_pred hHHhhccCCCEEEEEEECCChh-hHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC----HhHHHhhhCCCCCCCc
Q 030931 53 LWRHYFNNTDGLIYVVDSLDRE-RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT----PMEVCEGLGLFDLKNR 127 (169)
Q Consensus 53 ~~~~~~~~~~~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~ 127 (169)
+....+.++|.+++|+|+.++. +...+..++...- ..++|+++|+||+|+.+... .+++.+.+ ...
T Consensus 79 l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~----~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y-----~~~ 149 (307)
T 1t9h_A 79 LIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE----ANDIQPIICITKMDLIEDQDTEDTIQAYAEDY-----RNI 149 (307)
T ss_dssp ETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH----TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHH-----HHH
T ss_pred hhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH----HCCCCEEEEEECCccCchhhhHHHHHHHHHHH-----HhC
Confidence 3445688999999999997543 3444444443331 14789999999999975422 12333332 122
Q ss_pred eeEEEEeeeccCCCHHHHHHH
Q 030931 128 KWHIQGTCALKGDGLYEGLDW 148 (169)
Q Consensus 128 ~~~~~~~Sa~~~~gi~~~~~~ 148 (169)
+++.+.+||.++.|+++++..
T Consensus 150 g~~v~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 150 GYDVYLTSSKDQDSLADIIPH 170 (307)
T ss_dssp TCCEEECCHHHHTTCTTTGGG
T ss_pred CCeEEEEecCCCCCHHHHHhh
Confidence 346899999999998876654
No 220
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.85 E-value=5.1e-06 Score=63.38 Aligned_cols=128 Identities=10% Similarity=0.037 Sum_probs=59.6
Q ss_pred ccccCCCCCceeeeeceee-----e----eeeeeEEEEE--EEECC--EEEEEEEcCCCCCc--------------hhhH
Q 030931 2 LRVKQPYCTSCTLVKFYLL-----F----LLLVRFNVEK--VQYKN--VIFTVWDVGGQEKL--------------RPLW 54 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~-----~----~~t~~~~~~~--~~~~~--~~~~i~D~~G~~~~--------------~~~~ 54 (169)
|++..|+|||||++.+... . .|........ ++... ..+.++|++|-... ...+
T Consensus 47 LvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~ 126 (427)
T 2qag_B 47 CVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQF 126 (427)
T ss_dssp EECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHH
Confidence 6788999999999964211 1 1111111111 12222 36899999985432 1111
Q ss_pred Hhhc-------------cCC--C-EEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhh
Q 030931 55 RHYF-------------NNT--D-GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEG 118 (169)
Q Consensus 55 ~~~~-------------~~~--~-~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~ 118 (169)
..++ ..+ | +++|+.|.....+-.++ ..+. .+. .+.|+++|.||+|.........+...
T Consensus 127 ~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di-eilk-~L~----~~~~vI~Vi~KtD~Lt~~E~~~l~~~ 200 (427)
T 2qag_B 127 EAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL-VTMK-KLD----SKVNIIPIIAKADAISKSELTKFKIK 200 (427)
T ss_dssp HHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH-HHHH-HTC----SCSEEEEEESCGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH-HHHH-HHh----hCCCEEEEEcchhccchHHHHHHHHH
Confidence 1111 112 3 35566666443322221 2222 222 47899999999997543222222221
Q ss_pred hCCCCCCCceeEEEEeee
Q 030931 119 LGLFDLKNRKWHIQGTCA 136 (169)
Q Consensus 119 ~~~~~~~~~~~~~~~~Sa 136 (169)
+.. .+...+++++.+|.
T Consensus 201 I~~-~L~~~gi~I~~is~ 217 (427)
T 2qag_B 201 ITS-ELVSNGVQIYQFPT 217 (427)
T ss_dssp HHH-HHBTTBCCCCCCC-
T ss_pred HHH-HHHHcCCcEEecCC
Confidence 110 12344556666664
No 221
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.83 E-value=6.3e-07 Score=67.35 Aligned_cols=101 Identities=8% Similarity=0.032 Sum_probs=56.9
Q ss_pred ccccCCCCCceeeeeceee-----eeeeee------EEEEEEEECCEEEEEEEcCCCCCchhh--------HHhhc--cC
Q 030931 2 LRVKQPYCTSCTLVKFYLL-----FLLLVR------FNVEKVQYKNVIFTVWDVGGQEKLRPL--------WRHYF--NN 60 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~-----~~~t~~------~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~--~~ 60 (169)
+.+.+++|||||+|++... ...+.+ .....+..+ ..+.++||||......+ ...++ +.
T Consensus 167 ~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~ 245 (369)
T 3ec1_A 167 VVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLE-SGATLYDTPGIINHHQMAHFVDARDLKIITPKRE 245 (369)
T ss_dssp EECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECS-TTCEEEECCSCCCCSSGGGGSCTTTHHHHSCSSC
T ss_pred EEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeC-CCeEEEeCCCcCcHHHHHHHHhHHHHHHHhcccc
Confidence 5679999999999977432 111111 112223332 13799999996532211 12222 67
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030931 61 TDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG 108 (169)
Q Consensus 61 ~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 108 (169)
.++++++++.....-+..... + +++. ..+.|+++++||.|...
T Consensus 246 i~~~~~~l~~~~~~~~g~l~~-l-~~l~---~~~~~~~~v~~k~d~~~ 288 (369)
T 3ec1_A 246 IHPRVYQLNEGQTLFFGGLAR-L-DYIK---GGRRSFVCYMANELTVH 288 (369)
T ss_dssp CCCEEEEECTTEEEEETTTEE-E-EEEE---SSSEEEEEEECTTSCEE
T ss_pred cCceEEEEcCCceEEECCEEE-E-EEcc---CCCceEEEEecCCcccc
Confidence 899999998832211111100 0 1112 23689999999999753
No 222
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.70 E-value=1.9e-05 Score=60.13 Aligned_cols=147 Identities=14% Similarity=0.037 Sum_probs=77.0
Q ss_pred ccccCCCCCceeeeeceeeeeeeee------EEE----EEEEECCE-EEEEEEcCCCCCc----hhh-HHhhccCCCEEE
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR------FNV----EKVQYKNV-IFTVWDVGGQEKL----RPL-WRHYFNNTDGLI 65 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~------~~~----~~~~~~~~-~~~i~D~~G~~~~----~~~-~~~~~~~~~~ii 65 (169)
|++..|+|||||++.+.....|+.| ... ...+.... .+.+||++|...- ... ....+...+..+
T Consensus 74 lvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~ 153 (413)
T 1tq4_A 74 VTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFI 153 (413)
T ss_dssp EEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEE
T ss_pred EECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCccCCeE
Confidence 5679999999999965322211111 110 11122222 4789999984321 111 111234456555
Q ss_pred EEEECC--ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC---------CCCCHhHHHhhhCCCC------CCCce
Q 030931 66 YVVDSL--DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK---------GAMTPMEVCEGLGLFD------LKNRK 128 (169)
Q Consensus 66 ~v~d~~--~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~---------~~~~~~~~~~~~~~~~------~~~~~ 128 (169)
+ ++.. ..... .+...+.. .+.|+++|.||.|+. +.....++.+.+.... .....
T Consensus 154 ~-lS~G~~~kqrv----~la~aL~~----~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~ 224 (413)
T 1tq4_A 154 I-ISATRFKKNDI----DIAKAISM----MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAE 224 (413)
T ss_dssp E-EESSCCCHHHH----HHHHHHHH----TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred E-eCCCCccHHHH----HHHHHHHh----cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 5 7765 22211 12222222 257999999999863 1223333322221100 00011
Q ss_pred eEEEEeee--ccCCCHHHHHHHHHHHHHhhh
Q 030931 129 WHIQGTCA--LKGDGLYEGLDWLASTLKEMR 157 (169)
Q Consensus 129 ~~~~~~Sa--~~~~gi~~~~~~l~~~~~~~~ 157 (169)
...+.+|+ ..+.|++++.+.+.+.+.+..
T Consensus 225 ~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 225 PPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp CCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred CcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 24788999 666779999999988776654
No 223
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.66 E-value=1.7e-06 Score=64.95 Aligned_cols=101 Identities=5% Similarity=0.022 Sum_probs=55.5
Q ss_pred ccccCCCCCceeeeeceeee------eeeee----EE--EEEEEECCEEEEEEEcCCCCCchhh--------HHhh--cc
Q 030931 2 LRVKQPYCTSCTLVKFYLLF------LLLVR----FN--VEKVQYKNVIFTVWDVGGQEKLRPL--------WRHY--FN 59 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~------~~t~~----~~--~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~--~~ 59 (169)
+.+.+++|||||+|++.... .++.+ .+ ...+..+. .+.++||||......+ ...+ .+
T Consensus 165 ~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~ 243 (368)
T 3h2y_A 165 VVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDE-ESSLYDTPGIINHHQMAHYVGKQSLKLITPTK 243 (368)
T ss_dssp EEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSS-SCEEEECCCBCCTTSGGGGSCHHHHHHHSCSS
T ss_pred EecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecC-CeEEEeCCCcCcHHHHHHHhhHHHHHHhcccc
Confidence 56799999999999863321 11111 11 12222221 2899999996432211 1111 35
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030931 60 NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG 108 (169)
Q Consensus 60 ~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 108 (169)
..+..++++|.....-..... .+ +.+. ..+.|+++++||+|...
T Consensus 244 ~i~~~~~~l~~~~~~~~g~l~-~~-d~l~---~~~~~~~~v~nk~d~~~ 287 (368)
T 3h2y_A 244 EIKPMVFQLNEEQTLFFSGLA-RF-DYVS---GGRRAFTCHFSNRLTIH 287 (368)
T ss_dssp CCCCEEEEECTTEEEEETTTE-EE-EEEE---SSSEEEEEEECTTSCEE
T ss_pred ccCceEEEEcCCCEEEEcceE-EE-EEec---CCCceEEEEecCccccc
Confidence 788899999873221111110 00 1112 13689999999999754
No 224
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.48 E-value=2e-05 Score=56.66 Aligned_cols=102 Identities=13% Similarity=0.082 Sum_probs=54.0
Q ss_pred CccccCCCCCceeeeeceeeeeeeeeEE------------EEEEEE----C--CEEEEEEEcCCCCCc-------hhh--
Q 030931 1 MLRVKQPYCTSCTLVKFYLLFLLLVRFN------------VEKVQY----K--NVIFTVWDVGGQEKL-------RPL-- 53 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f~~~~~~t~~~~------------~~~~~~----~--~~~~~i~D~~G~~~~-------~~~-- 53 (169)
+|++..|+|||||++.+.....|+.|-- ...+.+ . ...+.++|++|-... ...
T Consensus 6 ~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~i~~ 85 (270)
T 3sop_A 6 MVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEPIEK 85 (270)
T ss_dssp EEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHHHHH
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHHHHH
Confidence 4678899999999997633333332200 011111 1 236899999873221 011
Q ss_pred -----HH--------------hhccCCCEEEEEEECCC-hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030931 54 -----WR--------------HYFNNTDGLIYVVDSLD-RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG 108 (169)
Q Consensus 54 -----~~--------------~~~~~~~~ii~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 108 (169)
.. ..+..+++.++++|... .-+-.+ ...+..+.+ ..++++|.+|+|...
T Consensus 86 ~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~~-----~~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 86 YINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLSK-----VVNIIPVIAKADTMT 154 (270)
T ss_dssp HHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHHT-----TSEEEEEETTGGGSC
T ss_pred HHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHHh-----cCcEEEEEeccccCC
Confidence 00 01234688899998642 212112 233444422 279999999999754
No 225
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.98 E-value=1.9e-05 Score=56.59 Aligned_cols=48 Identities=8% Similarity=-0.158 Sum_probs=28.1
Q ss_pred CccccCCCCCceeeeeceeee----eeeeeEEE--EEEEECCEEEEEEEcCCCCC
Q 030931 1 MLRVKQPYCTSCTLVKFYLLF----LLLVRFNV--EKVQYKNVIFTVWDVGGQEK 49 (169)
Q Consensus 1 ~~~~~~~~~Ktsll~~f~~~~----~~t~~~~~--~~~~~~~~~~~i~D~~G~~~ 49 (169)
++.+.+|+|||||+|++.... .++.|.+. ..+.. +..+.+|||||...
T Consensus 103 ~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 103 LIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSL-ENGVKILDTPGILY 156 (262)
T ss_dssp EEEESTTSSHHHHHHHHHTTCC----------CCSCEEEC-TTSCEEESSCEECC
T ss_pred EEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEe-CCCEEEEECCCccc
Confidence 356789999999999874322 23333221 11222 34689999999764
No 226
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.94 E-value=0.00065 Score=52.05 Aligned_cols=65 Identities=22% Similarity=0.180 Sum_probs=40.2
Q ss_pred CCEEEEEEEcCCCCCchhh-HH---h--hccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCC-e-EEEEEeCCCC
Q 030931 35 KNVIFTVWDVGGQEKLRPL-WR---H--YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNS-V-ILVFANKQDM 106 (169)
Q Consensus 35 ~~~~~~i~D~~G~~~~~~~-~~---~--~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-p-iivv~nK~Dl 106 (169)
..+.+.|+||||....... .. . .+..++.+++|+|...... .......+ + ... | ..+|.||+|.
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~-~----~~~~~i~gvVlnK~D~ 250 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAF-K----EAVGEIGSIIVTKLDG 250 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHH-H----TTSCSCEEEEEECSSS
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHH-h----hcccCCeEEEEeCCCC
Confidence 4677999999997653221 11 1 1236899999999865432 22222333 1 124 4 8999999997
Q ss_pred C
Q 030931 107 K 107 (169)
Q Consensus 107 ~ 107 (169)
.
T Consensus 251 ~ 251 (432)
T 2v3c_C 251 S 251 (432)
T ss_dssp C
T ss_pred c
Confidence 5
No 227
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.89 E-value=0.00016 Score=57.84 Aligned_cols=68 Identities=18% Similarity=0.130 Sum_probs=35.5
Q ss_pred EEEEEEcCCCCC-------------chhhHHhhccCC-CEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 030931 38 IFTVWDVGGQEK-------------LRPLWRHYFNNT-DGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANK 103 (169)
Q Consensus 38 ~~~i~D~~G~~~-------------~~~~~~~~~~~~-~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK 103 (169)
.+.+.|.||... ...+...+++.. ..++++.+.+....-.....+...+ ...+.+.++|.||
T Consensus 148 ~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v----~~~g~rtI~VlTK 223 (608)
T 3szr_A 148 DLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEV----DPEGDRTIGILTK 223 (608)
T ss_dssp CEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHH----CSSCCSEEEEEEC
T ss_pred ceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHH----hhcCCceEEEecc
Confidence 478899996322 122334445544 4444444432211111233444444 2246789999999
Q ss_pred CCCCCC
Q 030931 104 QDMKGA 109 (169)
Q Consensus 104 ~Dl~~~ 109 (169)
.|+.+.
T Consensus 224 ~Dlv~~ 229 (608)
T 3szr_A 224 PDLVDK 229 (608)
T ss_dssp GGGSSS
T ss_pred hhhcCc
Confidence 998654
No 228
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=96.84 E-value=9.6e-05 Score=53.45 Aligned_cols=46 Identities=9% Similarity=-0.058 Sum_probs=27.4
Q ss_pred ccccCCCCCceeeeeceeeeeeee----eEE--EEEEEECCEEEEEEEcCCCC
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLV----RFN--VEKVQYKNVIFTVWDVGGQE 48 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~----~~~--~~~~~~~~~~~~i~D~~G~~ 48 (169)
+.+.+++|||||+|++........ +.+ ...+.. +..+.+|||||..
T Consensus 125 ~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtpG~~ 176 (282)
T 1puj_A 125 IIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV-GKELELLDTPGIL 176 (282)
T ss_dssp EEESTTSSHHHHHHHHHTSCCC------------CCEEE-TTTEEEEECCCCC
T ss_pred EEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEe-CCCEEEEECcCcC
Confidence 567899999999998743321111 111 111222 2368999999964
No 229
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.63 E-value=0.0015 Score=49.94 Aligned_cols=65 Identities=17% Similarity=0.201 Sum_probs=39.1
Q ss_pred CEEEEEEEcCCCCC--chh-h---HHh--hccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030931 36 NVIFTVWDVGGQEK--LRP-L---WRH--YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 107 (169)
Q Consensus 36 ~~~~~i~D~~G~~~--~~~-~---~~~--~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 107 (169)
.+.+.|.||||... ... . ... .....+.+++|+|.............+.+. -.+..++.||.|..
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~-------~~~~gVIlTKlD~~ 251 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQA-------SPIGSVIITKMDGT 251 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHH-------CSSEEEEEECGGGC
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhcc-------cCCcEEEEeccccc
Confidence 57788999999644 111 1 111 112568999999997543332322333322 23578999999975
No 230
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.28 E-value=6.8e-05 Score=58.02 Aligned_cols=84 Identities=15% Similarity=0.128 Sum_probs=52.0
Q ss_pred ccccCCCCCceeeeeceee----eeeeeeEEEEEEEE---C-CEEEEEEEcCCCCC--chhhH--------HhhccCCCE
Q 030931 2 LRVKQPYCTSCTLVKFYLL----FLLLVRFNVEKVQY---K-NVIFTVWDVGGQEK--LRPLW--------RHYFNNTDG 63 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~----~~~t~~~~~~~~~~---~-~~~~~i~D~~G~~~--~~~~~--------~~~~~~~~~ 63 (169)
|.+-+||||||+.+++... ..+|.+++...+.. + .....+||..|.+. .+..+ ..++..+.+
T Consensus 44 lvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~~l~~~~G 123 (469)
T 1bif_A 44 MVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKFLSEEGG 123 (469)
T ss_dssp EECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred EECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4568999999999987433 23444433211111 1 24567899988733 33333 556667889
Q ss_pred EEEEEECCChhhHHHHHHHHHHH
Q 030931 64 LIYVVDSLDRERIGKAKQEFQAI 86 (169)
Q Consensus 64 ii~v~d~~~~~~~~~~~~~~~~~ 86 (169)
.++|+|.++. +.+....|+..+
T Consensus 124 ~~vV~D~tn~-~~~~R~~~~~~~ 145 (469)
T 1bif_A 124 HVAVFDATNT-TRERRAMIFNFG 145 (469)
T ss_dssp SEEEEESCCC-SHHHHHHHHHHH
T ss_pred CEEEEeCCCC-CHHHHHHHHHHH
Confidence 9999999886 454445555444
No 231
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=95.66 E-value=0.0028 Score=50.41 Aligned_cols=48 Identities=13% Similarity=-0.124 Sum_probs=31.1
Q ss_pred ccccCCCCCceeeeeceeee----------eeeeeEEEEEEE---ECCEEEEEEEcCCCCC
Q 030931 2 LRVKQPYCTSCTLVKFYLLF----------LLLVRFNVEKVQ---YKNVIFTVWDVGGQEK 49 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~----------~~t~~~~~~~~~---~~~~~~~i~D~~G~~~ 49 (169)
+.+.+++|||||+|++.... ..|.++...... ..+..+.++||||...
T Consensus 43 ivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 43 IVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp EEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred EECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 67899999999999763221 122333222221 2567899999999654
No 232
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.04 E-value=0.068 Score=41.02 Aligned_cols=65 Identities=15% Similarity=0.115 Sum_probs=39.3
Q ss_pred CEEEEEEEcCCCCCchhhHH------hhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030931 36 NVIFTVWDVGGQEKLRPLWR------HYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 107 (169)
Q Consensus 36 ~~~~~i~D~~G~~~~~~~~~------~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 107 (169)
++.+.|+||+|......... .....++.+++|+|+.......... ..+.+. -.+..+|.||.|..
T Consensus 182 ~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a---~~f~~~----~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 182 GVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQA---LAFKEA----TPIGSIIVTKLDGS 252 (443)
T ss_dssp TCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH---HHHHHS----CTTEEEEEECCSSC
T ss_pred CCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHH---HHHHhh----CCCeEEEEECCCCc
Confidence 47899999999654322111 1123579999999986543322222 233211 23567899999975
No 233
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=95.01 E-value=0.25 Score=34.13 Aligned_cols=82 Identities=17% Similarity=0.126 Sum_probs=57.1
Q ss_pred CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHH
Q 030931 36 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEV 115 (169)
Q Consensus 36 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~ 115 (169)
.+.+.|+|+|+... ......+..+|.++++... +..+...+...++.+.+ ...+...+-+|.|+.+.......+++
T Consensus 118 ~yD~viiD~p~~~~--~~~~~~l~~ad~viiv~~~-~~~~~~~~~~~~~~l~~-~~~~~~~~~~v~N~~~~~~~~~~~~~ 193 (245)
T 3ea0_A 118 FYDYIIVDFGASID--HVGVWVLEHLDELCIVTTP-SLQSLRRAGQLLKLCKE-FEKPISRIEIILNRADTNSRITSDEI 193 (245)
T ss_dssp HCSEEEEEEESSCC--TTHHHHGGGCSEEEEEECS-SHHHHHHHHHHHHHHHT-CSSCCSCEEEEEESTTSCTTSCHHHH
T ss_pred hCCEEEEeCCCCCc--hHHHHHHHHCCEEEEEecC-cHHHHHHHHHHHHHHHH-hCCCccceEEEEecCCCCCCCCHHHH
Confidence 46789999998653 2445567889999999986 45666666666666533 22234568899999997655566677
Q ss_pred HhhhCC
Q 030931 116 CEGLGL 121 (169)
Q Consensus 116 ~~~~~~ 121 (169)
.+.++.
T Consensus 194 ~~~~~~ 199 (245)
T 3ea0_A 194 EKVIGR 199 (245)
T ss_dssp HHHHTS
T ss_pred HHHhCC
Confidence 666654
No 234
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=94.83 E-value=0.11 Score=34.94 Aligned_cols=69 Identities=10% Similarity=0.009 Sum_probs=47.7
Q ss_pred CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCC-CCCCCeEEEEEeCCCCC
Q 030931 35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDP-FMLNSVILVFANKQDMK 107 (169)
Q Consensus 35 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~piivv~nK~Dl~ 107 (169)
..+.+.|+|+|+.. .......+..+|.++++...+.. + ......++.+.+.. ..++.++.+|.|+.|..
T Consensus 74 ~~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 74 ADYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPL-D-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp TTSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTT-T-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CCCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHH-H-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 35789999999876 34455667789999999987544 3 55555555543321 13467889999999954
No 235
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.22 E-value=0.018 Score=38.39 Aligned_cols=103 Identities=5% Similarity=-0.065 Sum_probs=41.8
Q ss_pred ccccCCCCCceeeeeceeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhh----ccCCCEEEEEEEC--CChhh
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHY----FNNTDGLIYVVDS--LDRER 75 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~----~~~~~~ii~v~d~--~~~~~ 75 (169)
+.+..|+|||||++++..... ..+.....+......+. +|.+|.+.++-....+ ........++.+. ..+..
T Consensus 11 i~G~sGsGKTTl~~~l~~~l~-~~g~~v~~i~~~~~~~~-id~~g~Ds~~~~~~G~~~v~i~~~~~~~~~~~~~~~~~~~ 88 (174)
T 1np6_A 11 FAAWSGTGKTTLLKKLIPALC-ARGIRPGLIKHTHHDMD-VDKPGKDSYELRKAGAAQTIVASQQRWALMTETPDEEELD 88 (174)
T ss_dssp EECCTTSCHHHHHHHHHHHHH-HTTCCEEEEEECCC-------------CHHHHTCSEEEEECSSEEEEEEECSSSCCCC
T ss_pred EEeCCCCCHHHHHHHHHHhcc-ccCCceeEEeeCCCccc-cCCCCCceEEEEeCCcceeecccchhheeeeeccCCchhh
Confidence 345789999999998744321 22323333444333222 3556655332111111 1111222333331 12234
Q ss_pred HHHHHHHHHHH------hcCCCCCCCeEEEEEeCCCC
Q 030931 76 IGKAKQEFQAI------IKDPFMLNSVILVFANKQDM 106 (169)
Q Consensus 76 ~~~~~~~~~~~------~~~~~~~~~piivv~nK~Dl 106 (169)
+..+...+... ++.......|.+++.+|.+-
T Consensus 89 L~~ll~r~~~~~~D~ilIEg~k~~~~pki~v~~~~~~ 125 (174)
T 1np6_A 89 LQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAG 125 (174)
T ss_dssp HHHHHHHSCGGGCSEEEEESCSSCCSEEEEEECTTSS
T ss_pred HHHHHHhcCCCcchHHHHHHHhhcCCCEEEEEecccC
Confidence 44443222110 11123346899999999864
No 236
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.04 E-value=0.021 Score=42.11 Aligned_cols=64 Identities=13% Similarity=0.137 Sum_probs=35.1
Q ss_pred CEEEEEEEcCCCCCchhhHHh------hccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 030931 36 NVIFTVWDVGGQEKLRPLWRH------YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 106 (169)
Q Consensus 36 ~~~~~i~D~~G~~~~~~~~~~------~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl 106 (169)
.+.+.+.|++|.......... ..-..|-.+++.|..... +.......+.+. --.-.++.||.|-
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~----~~it~iilTKlD~ 280 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEA----VKIDGIILTKLDA 280 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHH----SCCCEEEEECGGG
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHh----cCCCEEEEeCcCC
Confidence 345678999997543221111 112478899999975543 222233333211 1234788899996
No 237
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.94 E-value=0.49 Score=34.07 Aligned_cols=81 Identities=14% Similarity=0.142 Sum_probs=51.3
Q ss_pred CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEE-EEEeCCCCCCCCCHhH
Q 030931 36 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVIL-VFANKQDMKGAMTPME 114 (169)
Q Consensus 36 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii-vv~nK~Dl~~~~~~~~ 114 (169)
.+.+.|+|+|+...... ....+..+|.+|+|... +..++..+...+..+.......+.+++ +|.|+.+.. ...++
T Consensus 156 ~yD~ViiD~p~~~~~~~-~~~~l~~aD~viiv~~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~--~~~~~ 231 (307)
T 3end_A 156 DTDVVIFDVLGDVVCGG-FAAPLQHADQAVVVTAN-DFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT--DEVDR 231 (307)
T ss_dssp SCSEEEEEECCSSCCGG-GGGGGGTCSEEEEEECS-SHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC--HHHHH
T ss_pred cCCEEEEeCCCccchHH-HHHHHHHCCEEEEEecC-cHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH--HHHHH
Confidence 57889999987643222 23456789999999976 445666666666655443223456655 999999842 22344
Q ss_pred HHhhhC
Q 030931 115 VCEGLG 120 (169)
Q Consensus 115 ~~~~~~ 120 (169)
+.+.++
T Consensus 232 ~~~~~g 237 (307)
T 3end_A 232 FCKETN 237 (307)
T ss_dssp HHHHHT
T ss_pred HHHHcC
Confidence 554444
No 238
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=93.24 E-value=0.66 Score=32.57 Aligned_cols=66 Identities=11% Similarity=-0.037 Sum_probs=45.5
Q ss_pred CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 030931 35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQD 105 (169)
Q Consensus 35 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~D 105 (169)
+.+.+.|+|+|+.. .......+..+|.+|++...+ ..+...+...++.+.+.. .+.++.+|.|+.+
T Consensus 143 ~~yD~viiD~pp~~--~~~~~~~l~~aD~vivv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~~vv~N~~~ 208 (267)
T 3k9g_A 143 YKYDYIVIDTNPSL--DVTLKNALLCSDYVIIPMTAE-KWAVESLDLFNFFVRKLN--LFLPIFLIITRFK 208 (267)
T ss_dssp TTCSEEEEEECSSC--SHHHHHHHTTCSEEEEEEESC-TTHHHHHHHHHHHHHTTT--CCCCEEEEEEEEC
T ss_pred cCCCEEEEECcCCc--cHHHHHHHHHCCeEEEEeCCC-hHHHHHHHHHHHHHHHHh--ccCCEEEEEeccc
Confidence 35778999999865 334455667799999999874 455565555555543321 3567889999994
No 239
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=92.29 E-value=0.42 Score=32.48 Aligned_cols=68 Identities=12% Similarity=-0.013 Sum_probs=46.6
Q ss_pred CCEEEEEEEcCCC-CCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030931 35 KNVIFTVWDVGGQ-EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG 108 (169)
Q Consensus 35 ~~~~~~i~D~~G~-~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 108 (169)
+.+.+.+.|+|+. ... .....+..+|.+|++... +..+.......++.+.+.. +.++.++.|+.|...
T Consensus 66 ~~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~-~~~~~~~~~~~~~~l~~~~---~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTP-DALALDALMLTIETLQKLG---NNRFRILLTIIPPYP 134 (209)
T ss_dssp GGCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECS-SHHHHHHHHHHHHHHHHTC---SSSEEEEECSBCCTT
T ss_pred hcCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecC-CchhHHHHHHHHHHHHhcc---CCCEEEEEEecCCcc
Confidence 3577899999987 432 344567789999999986 4455555555555543311 466889999998653
No 240
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=91.71 E-value=1.6 Score=29.78 Aligned_cols=79 Identities=8% Similarity=-0.005 Sum_probs=51.4
Q ss_pred CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC-CCHhH
Q 030931 36 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA-MTPME 114 (169)
Q Consensus 36 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~-~~~~~ 114 (169)
.+.+.|+|+|+... ......+..+|.+|+|... +..+...+...++.+.+. ...+.-+|.|+.+.... ...++
T Consensus 111 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~-~~~~~~~~~~~~~~l~~~---~~~~~~vv~N~~~~~~~~~~~~~ 184 (237)
T 1g3q_A 111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNP-EISCLTDTMKVGIVLKKA---GLAILGFVLNRYGRSDRDIPPEA 184 (237)
T ss_dssp GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECS-CHHHHHHHHHHHHHHHHT---TCEEEEEEEEEETSCTTCCCHHH
T ss_pred cCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecC-CcccHHHHHHHHHHHHhC---CCceEEEEEecCCcccchhHHHH
Confidence 46789999988643 3455667889999999976 445566665555554332 23567789999986433 23455
Q ss_pred HHhhhC
Q 030931 115 VCEGLG 120 (169)
Q Consensus 115 ~~~~~~ 120 (169)
+.+.++
T Consensus 185 ~~~~~~ 190 (237)
T 1g3q_A 185 AEDVME 190 (237)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 555554
No 241
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=91.69 E-value=0.85 Score=32.01 Aligned_cols=67 Identities=12% Similarity=0.051 Sum_probs=42.4
Q ss_pred CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEE-EEEeCCCC
Q 030931 35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVIL-VFANKQDM 106 (169)
Q Consensus 35 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii-vv~nK~Dl 106 (169)
+.+.+.|+|+|+...........+..+|.+|+|...+ ..+...+...++.+.+ .+.+++ +|.|+.|.
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~-~~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQ-ELTAVIVEKAINMAEE----TNTSVLGLVENMSYF 194 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSS-SCCHHHHHHHHHHHHT----TTCCEEEEEETTCCE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCc-cchHHHHHHHHHHHHh----CCCCEEEEEECCCcc
Confidence 4577899999986543222222233689999998764 3445555555555432 245666 99999873
No 242
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=90.74 E-value=0.85 Score=32.95 Aligned_cols=65 Identities=15% Similarity=0.100 Sum_probs=40.3
Q ss_pred CCEEEEEEEcCCCCC--chh-hHH-----hhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCC
Q 030931 35 KNVIFTVWDVGGQEK--LRP-LWR-----HYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQD 105 (169)
Q Consensus 35 ~~~~~~i~D~~G~~~--~~~-~~~-----~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D 105 (169)
..+.+.|.||||... ... +.. .....++.+++|+|...... .......+.+ ..| ..+|.||.|
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~-----~~~i~gvVlnk~D 250 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ-----ASKIGTIIITKMD 250 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH-----TCTTEEEEEECGG
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh-----hCCCCEEEEeCCC
Confidence 467899999999876 321 111 12447899999999864321 1222233321 244 778999999
Q ss_pred CC
Q 030931 106 MK 107 (169)
Q Consensus 106 l~ 107 (169)
..
T Consensus 251 ~~ 252 (297)
T 1j8m_F 251 GT 252 (297)
T ss_dssp GC
T ss_pred CC
Confidence 64
No 243
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=90.08 E-value=0.81 Score=31.80 Aligned_cols=82 Identities=10% Similarity=-0.009 Sum_probs=52.9
Q ss_pred CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCC-----CCCCCeEEEEEeCCCCCC--
Q 030931 36 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDP-----FMLNSVILVFANKQDMKG-- 108 (169)
Q Consensus 36 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~-----~~~~~piivv~nK~Dl~~-- 108 (169)
.+.+.|+|+|+... ......+..+|.+|+|.+. +..+.......+..+.... ..+...+-+|.|+.+...
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~~~~ 189 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNP-EVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPGRVS 189 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECS-SHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECHHHHH
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecC-ChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCccccc
Confidence 68899999998543 3556677889999999986 4556666666665553211 012357889999988421
Q ss_pred ---CCCHhHHHhhhC
Q 030931 109 ---AMTPMEVCEGLG 120 (169)
Q Consensus 109 ---~~~~~~~~~~~~ 120 (169)
....+++.+.++
T Consensus 190 ~~~~~~~~~~~~~~~ 204 (260)
T 3q9l_A 190 RGDMLSMEDVLEILR 204 (260)
T ss_dssp TTSSCCHHHHHHHHC
T ss_pred cccccCHHHHHHHhC
Confidence 122355555554
No 244
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=90.06 E-value=0.039 Score=38.66 Aligned_cols=25 Identities=8% Similarity=-0.150 Sum_probs=19.5
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|||||||++-+..-..|+.|
T Consensus 36 i~G~nGsGKSTLl~~l~Gl~~p~~G 60 (237)
T 2cbz_A 36 VVGQVGCGKSSLLSALLAEMDKVEG 60 (237)
T ss_dssp EECSTTSSHHHHHHHHTTCSEEEEE
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCc
Confidence 5678999999999977665666655
No 245
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=89.58 E-value=0.033 Score=38.93 Aligned_cols=25 Identities=12% Similarity=-0.274 Sum_probs=20.2
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|||||||++-+..-..|+.|
T Consensus 36 iiG~nGsGKSTLl~~l~Gl~~p~~G 60 (235)
T 3tif_A 36 IMGPSGSGKSTMLNIIGCLDKPTEG 60 (235)
T ss_dssp EECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred EECCCCCcHHHHHHHHhcCCCCCce
Confidence 5678999999999977666666666
No 246
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=89.44 E-value=0.78 Score=32.08 Aligned_cols=69 Identities=9% Similarity=0.071 Sum_probs=43.4
Q ss_pred CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHH---HHHHHhcCCCCCCCeEE-EEEeCCCCC
Q 030931 35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQ---EFQAIIKDPFMLNSVIL-VFANKQDMK 107 (169)
Q Consensus 35 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~---~~~~~~~~~~~~~~pii-vv~nK~Dl~ 107 (169)
..+.+.|+|+|+.... .....+..+|.+|+++..+. .++..+.. .+..+.+. ..++.+++ +|.|+.|..
T Consensus 110 ~~yD~iiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~-~~~~~~~~gvv~N~~~~~ 182 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSP--LTLNALAAAEGVVVPVQAEY-YALEGVAGLLATLEEVRAG-LNPRLRLLGILVTMYDGR 182 (257)
T ss_dssp TTCSEEEEECCSSCCH--HHHHHHHHCSEEEEEEESST-HHHHHHHHHHHHHHHHHHH-TCTTCEEEEEEEESBCTT
T ss_pred cCCCEEEEeCCCCCCH--HHHHHHHHCCeEEEEecCch-HHHHHHHHHHHHHHHHHHH-hCCCceEEEEEEEeECCC
Confidence 4577999999987532 23445677999999998743 44444433 33333211 12356764 899999864
No 247
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=88.96 E-value=0.038 Score=38.30 Aligned_cols=25 Identities=16% Similarity=-0.177 Sum_probs=19.8
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|+|||||++-+..-..|+.|
T Consensus 35 iiG~nGsGKSTLl~~l~Gl~~p~~G 59 (224)
T 2pcj_A 35 IIGASGSGKSTLLYILGLLDAPTEG 59 (224)
T ss_dssp EEECTTSCHHHHHHHHTTSSCCSEE
T ss_pred EECCCCCCHHHHHHHHhcCCCCCce
Confidence 5678999999999977666666655
No 248
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=88.77 E-value=0.94 Score=31.13 Aligned_cols=66 Identities=18% Similarity=0.062 Sum_probs=43.6
Q ss_pred CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 030931 35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 106 (169)
Q Consensus 35 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl 106 (169)
..+.+.|+|+|+.... .....+..+|.++++.+. +..++..+....+.. +.. .-..+.++.|+.+.
T Consensus 130 ~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~-~~~s~~~~~~~~~~~-~~~--~~~~~~~v~N~~~~ 195 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEP-NLNSIKTGLNIEKLA-GDL--GIKKVRYVINKVRN 195 (254)
T ss_dssp TCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECS-SHHHHHHHHHHHHHH-HHH--TCSCEEEEEEEECC
T ss_pred CCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCC-CHHHHHHHHHHHHHH-HHc--CCccEEEEEeCCCC
Confidence 4678999999986533 344566889999999987 445555554444322 211 12467899999983
No 249
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=88.55 E-value=0.041 Score=38.63 Aligned_cols=25 Identities=12% Similarity=-0.289 Sum_probs=19.7
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|+|||||++-+..-..|+.|
T Consensus 29 liG~nGsGKSTLl~~l~Gl~~p~~G 53 (240)
T 2onk_A 29 LLGPTGAGKSVFLELIAGIVKPDRG 53 (240)
T ss_dssp EECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred EECCCCCCHHHHHHHHhCCCCCCce
Confidence 5778999999999977655556655
No 250
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=88.54 E-value=0.049 Score=35.94 Aligned_cols=16 Identities=19% Similarity=-0.145 Sum_probs=13.7
Q ss_pred ccccCCCCCceeeeec
Q 030931 2 LRVKQPYCTSCTLVKF 17 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f 17 (169)
|++..|||||||++.+
T Consensus 14 l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 14 LIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EECCTTSCHHHHHHHH
T ss_pred EECCCCCCHHHHHHHH
Confidence 5678999999999954
No 251
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=88.54 E-value=0.043 Score=37.84 Aligned_cols=25 Identities=8% Similarity=-0.077 Sum_probs=19.8
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|+|||||++-+..-..|+.|
T Consensus 40 iiG~NGsGKSTLlk~l~Gl~~p~~G 64 (214)
T 1sgw_A 40 FHGPNGIGKTTLLKTISTYLKPLKG 64 (214)
T ss_dssp EECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCe
Confidence 5678999999999987666666655
No 252
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=88.29 E-value=0.049 Score=38.49 Aligned_cols=24 Identities=13% Similarity=-0.187 Sum_probs=19.2
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|+|||||++-+..-..|+ |
T Consensus 31 liG~NGsGKSTLlk~l~Gl~~p~-G 54 (249)
T 2qi9_C 31 LVGPNGAGKSTLLARMAGMTSGK-G 54 (249)
T ss_dssp EECCTTSSHHHHHHHHTTSSCCE-E
T ss_pred EECCCCCcHHHHHHHHhCCCCCC-e
Confidence 56789999999999776666666 6
No 253
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=88.19 E-value=0.048 Score=38.65 Aligned_cols=25 Identities=4% Similarity=-0.269 Sum_probs=18.7
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|+|||||++-+..-..|+.|
T Consensus 38 liG~nGsGKSTLlk~l~Gl~~p~~G 62 (257)
T 1g6h_A 38 IIGPNGSGKSTLINVITGFLKADEG 62 (257)
T ss_dssp EECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCc
Confidence 5678999999999976555555544
No 254
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=88.18 E-value=0.047 Score=37.97 Aligned_cols=25 Identities=4% Similarity=-0.233 Sum_probs=19.6
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|+|||||++-+.....|+.|
T Consensus 39 i~G~nGsGKSTLl~~l~Gl~~p~~G 63 (229)
T 2pze_A 39 VAGSTGAGKTSLLMMIMGELEPSEG 63 (229)
T ss_dssp EECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred EECCCCCCHHHHHHHHhCCCcCCcc
Confidence 5678999999999977666666655
No 255
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.09 E-value=0.049 Score=38.20 Aligned_cols=25 Identities=16% Similarity=-0.133 Sum_probs=19.5
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|+|||||++-+..-..|+.|
T Consensus 37 l~G~nGsGKSTLl~~l~Gl~~p~~G 61 (240)
T 1ji0_A 37 LIGANGAGKTTTLSAIAGLVRAQKG 61 (240)
T ss_dssp EECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCc
Confidence 5678999999999977665556655
No 256
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=88.07 E-value=0.049 Score=38.73 Aligned_cols=25 Identities=12% Similarity=-0.223 Sum_probs=19.2
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|+|||||++-+..-..|+.|
T Consensus 37 liG~nGsGKSTLlk~l~Gl~~p~~G 61 (262)
T 1b0u_A 37 IIGSSGSGKSTFLRCINFLEKPSEG 61 (262)
T ss_dssp EECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCc
Confidence 5678999999999976555555555
No 257
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=88.07 E-value=0.049 Score=38.39 Aligned_cols=25 Identities=4% Similarity=-0.144 Sum_probs=19.2
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|+|||||++-+..-..|+.|
T Consensus 40 i~G~nGsGKSTLl~~l~Gl~~p~~G 64 (247)
T 2ff7_A 40 IVGRSGSGKSTLTKLIQRFYIPENG 64 (247)
T ss_dssp EECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCc
Confidence 5678999999999976555556555
No 258
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.02 E-value=0.05 Score=38.61 Aligned_cols=25 Identities=16% Similarity=-0.125 Sum_probs=19.0
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|+|||||++-+..-..|+.|
T Consensus 46 l~G~NGsGKSTLlk~l~Gl~~p~~G 70 (256)
T 1vpl_A 46 LIGPNGAGKTTTLRIISTLIKPSSG 70 (256)
T ss_dssp EECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred EECCCCCCHHHHHHHHhcCCCCCce
Confidence 5678999999999976555555555
No 259
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=87.68 E-value=0.054 Score=38.61 Aligned_cols=25 Identities=16% Similarity=-0.200 Sum_probs=19.5
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|+|||||++-+..-..|+.|
T Consensus 55 liG~NGsGKSTLlk~l~Gl~~p~~G 79 (263)
T 2olj_A 55 VIGPSGSGKSTFLRCLNLLEDFDEG 79 (263)
T ss_dssp EECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred EEcCCCCcHHHHHHHHHcCCCCCCc
Confidence 5678999999999977655556655
No 260
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=87.64 E-value=0.054 Score=38.33 Aligned_cols=25 Identities=8% Similarity=-0.130 Sum_probs=19.2
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|+|||||++-+..-..|+.|
T Consensus 36 l~G~nGsGKSTLl~~l~Gl~~p~~G 60 (253)
T 2nq2_C 36 VLGQNGCGKSTLLDLLLGIHRPIQG 60 (253)
T ss_dssp EECCSSSSHHHHHHHHTTSSCCSEE
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCc
Confidence 5678999999999977555555555
No 261
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=87.45 E-value=0.056 Score=38.76 Aligned_cols=25 Identities=8% Similarity=-0.110 Sum_probs=18.8
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|||||||++-+..-..|+.|
T Consensus 39 iiGpnGsGKSTLl~~l~Gl~~p~~G 63 (275)
T 3gfo_A 39 ILGGNGVGKSTLFQNFNGILKPSSG 63 (275)
T ss_dssp EECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred EECCCCCCHHHHHHHHHcCCCCCCe
Confidence 5678999999999976555555554
No 262
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=87.43 E-value=0.044 Score=39.76 Aligned_cols=25 Identities=16% Similarity=-0.096 Sum_probs=18.8
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|+|||||++.+.....|+.|
T Consensus 174 l~G~sG~GKSTll~~l~g~~~~~~G 198 (301)
T 1u0l_A 174 MAGLSGVGKSSLLNAINPGLKLRVS 198 (301)
T ss_dssp EECSTTSSHHHHHHHHSTTCCCC--
T ss_pred EECCCCCcHHHHHHHhccccccccc
Confidence 5678999999999988666666655
No 263
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=87.37 E-value=0.048 Score=38.30 Aligned_cols=25 Identities=4% Similarity=-0.153 Sum_probs=18.6
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|||||||++-+..-..|+.|
T Consensus 33 i~G~nGsGKSTLl~~l~Gl~~p~~G 57 (243)
T 1mv5_A 33 FAGPSGGGKSTIFSLLERFYQPTAG 57 (243)
T ss_dssp EECCTTSSHHHHHHHHTTSSCCSBS
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCc
Confidence 5678999999999976555555544
No 264
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=87.36 E-value=0.058 Score=38.58 Aligned_cols=25 Identities=12% Similarity=-0.146 Sum_probs=18.4
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|+|||||++-+..-..|+.|
T Consensus 50 i~G~nGsGKSTLlk~l~Gl~~p~~G 74 (271)
T 2ixe_A 50 LVGPNGSGKSTVAALLQNLYQPTGG 74 (271)
T ss_dssp EECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCC
Confidence 5678999999999966554445544
No 265
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=87.25 E-value=0.066 Score=35.71 Aligned_cols=16 Identities=6% Similarity=-0.004 Sum_probs=13.6
Q ss_pred ccccCCCCCceeeeec
Q 030931 2 LRVKQPYCTSCTLVKF 17 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f 17 (169)
|++..|+|||||++.+
T Consensus 5 l~G~nGsGKTTLl~~l 20 (178)
T 1ye8_A 5 ITGEPGVGKTTLVKKI 20 (178)
T ss_dssp EECCTTSSHHHHHHHH
T ss_pred EECCCCCCHHHHHHHH
Confidence 5679999999999854
No 266
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=87.25 E-value=0.059 Score=38.72 Aligned_cols=25 Identities=8% Similarity=-0.265 Sum_probs=18.7
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|+|||||++-+..-..|+.|
T Consensus 52 liG~NGsGKSTLlk~l~Gl~~p~~G 76 (279)
T 2ihy_A 52 LYGLNGAGKTTLLNILNAYEPATSG 76 (279)
T ss_dssp EECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred EECCCCCcHHHHHHHHhCCCCCCCe
Confidence 5678999999999966555555544
No 267
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=87.10 E-value=0.077 Score=37.40 Aligned_cols=25 Identities=8% Similarity=-0.306 Sum_probs=19.1
Q ss_pred ccccCCCCCceeeeeceee--eeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLL--FLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~--~~~t~~ 26 (169)
|++..|+|||||++-+..- ..|+.|
T Consensus 34 l~G~nGsGKSTLlk~l~Gl~~~~p~~G 60 (250)
T 2d2e_A 34 LMGPNGAGKSTLGKILAGDPEYTVERG 60 (250)
T ss_dssp EECSTTSSHHHHHHHHHTCTTCEEEEE
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCCce
Confidence 5678999999999977554 456655
No 268
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=86.92 E-value=0.051 Score=38.76 Aligned_cols=25 Identities=8% Similarity=-0.263 Sum_probs=19.0
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|||||||++-+..-..|+.|
T Consensus 42 liG~nGsGKSTLl~~l~Gl~~p~~G 66 (266)
T 4g1u_C 42 IIGPNGAGKSTLLRLLTGYLSPSHG 66 (266)
T ss_dssp EECCTTSCHHHHHHHHTSSSCCSSC
T ss_pred EECCCCCcHHHHHHHHhcCCCCCCc
Confidence 5678999999999976555555554
No 269
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=86.91 E-value=0.077 Score=38.36 Aligned_cols=25 Identities=4% Similarity=-0.233 Sum_probs=19.8
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|+|||||++-+..-..|+.|
T Consensus 69 i~G~NGsGKSTLlk~l~Gl~~p~~G 93 (290)
T 2bbs_A 69 VAGSTGAGKTSLLMMIMGELEPSEG 93 (290)
T ss_dssp EEESTTSSHHHHHHHHTTSSCEEEE
T ss_pred EECCCCCcHHHHHHHHhcCCCCCCc
Confidence 5678999999999977666666665
No 270
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=86.81 E-value=0.073 Score=40.92 Aligned_cols=16 Identities=6% Similarity=-0.240 Sum_probs=14.0
Q ss_pred ccccCCCCCceeeeec
Q 030931 2 LRVKQPYCTSCTLVKF 17 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f 17 (169)
+.+.+.+|||+|+|++
T Consensus 72 V~G~~~~GKStLLN~l 87 (447)
T 3q5d_A 72 VAGAFRKGKSFLMDFM 87 (447)
T ss_dssp EEESTTSSHHHHHHHH
T ss_pred EECCCCCcHHHHHHHH
Confidence 4678999999999986
No 271
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=86.75 E-value=1.4 Score=30.63 Aligned_cols=66 Identities=12% Similarity=0.005 Sum_probs=44.0
Q ss_pred CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030931 36 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 107 (169)
Q Consensus 36 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 107 (169)
.+.+.|+|+|+... ......+..+|.+|+|... +..+...+...+..+.+. ...++-+|.|+.+..
T Consensus 110 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~-~~~~~~~~~~~~~~l~~~---~~~~~~vv~N~~~~~ 175 (263)
T 1hyq_A 110 STDILLLDAPAGLE--RSAVIAIAAAQELLLVVNP-EISSITDGLKTKIVAERL---GTKVLGVVVNRITTL 175 (263)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECS-SHHHHHHHHHHHHHHHHH---TCEEEEEEEEEECTT
T ss_pred hCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCC-ChhHHHHHHHHHHHHHhc---CCCeeEEEEccCCcc
Confidence 57789999998644 3445567789999999876 344555555554444322 234667899999854
No 272
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=86.67 E-value=0.066 Score=38.13 Aligned_cols=25 Identities=12% Similarity=-0.207 Sum_probs=18.3
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|+|||||++-+..-..|+.|
T Consensus 38 liG~nGsGKSTLl~~i~Gl~~p~~G 62 (266)
T 2yz2_A 38 VAGNTGSGKSTLLQIVAGLIEPTSG 62 (266)
T ss_dssp EECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred EECCCCCcHHHHHHHHhCCCCCCCc
Confidence 5678999999999966544445544
No 273
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=86.49 E-value=0.049 Score=39.55 Aligned_cols=24 Identities=17% Similarity=-0.070 Sum_probs=19.1
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|+|||||++.+. ...|+.|
T Consensus 170 l~G~sG~GKSTLln~l~-~~~~~~G 193 (302)
T 2yv5_A 170 LAGPSGVGKSSILSRLT-GEELRTQ 193 (302)
T ss_dssp EECSTTSSHHHHHHHHH-SCCCCCS
T ss_pred EECCCCCCHHHHHHHHH-HhhCccc
Confidence 56789999999999887 6656555
No 274
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=86.13 E-value=0.1 Score=35.47 Aligned_cols=22 Identities=9% Similarity=-0.207 Sum_probs=16.7
Q ss_pred ccccCCCCCceeeeeceeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLL 23 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~ 23 (169)
|.+..|||||||++.+.....|
T Consensus 27 I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 27 LSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp EECCTTSCTHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHhh
Confidence 5678999999999976544443
No 275
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=86.03 E-value=0.077 Score=37.78 Aligned_cols=24 Identities=8% Similarity=-0.140 Sum_probs=19.6
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|+|||||++-+.... |+.|
T Consensus 35 i~G~NGsGKSTLlk~l~Gl~-p~~G 58 (263)
T 2pjz_A 35 ILGPNGSGKTTLLRAISGLL-PYSG 58 (263)
T ss_dssp EECCTTSSHHHHHHHHTTSS-CCEE
T ss_pred EECCCCCCHHHHHHHHhCCC-CCCc
Confidence 56789999999999876666 7666
No 276
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=85.89 E-value=0.062 Score=35.69 Aligned_cols=17 Identities=6% Similarity=-0.205 Sum_probs=14.1
Q ss_pred ccccCCCCCceeeeece
Q 030931 2 LRVKQPYCTSCTLVKFY 18 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~ 18 (169)
|.+..|||||||++.+.
T Consensus 10 i~GpsGsGKSTL~~~L~ 26 (180)
T 1kgd_A 10 LLGAHGVGRRHIKNTLI 26 (180)
T ss_dssp EECCTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 55688999999999763
No 277
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=85.80 E-value=0.062 Score=37.57 Aligned_cols=17 Identities=0% Similarity=-0.203 Sum_probs=14.5
Q ss_pred ccccCCCCCceeeeece
Q 030931 2 LRVKQPYCTSCTLVKFY 18 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~ 18 (169)
|.+.+|||||||++.+.
T Consensus 32 l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 32 ILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp EECCTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 56799999999999764
No 278
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=85.64 E-value=0.06 Score=40.17 Aligned_cols=25 Identities=16% Similarity=0.012 Sum_probs=19.2
Q ss_pred ccccCCCCCceeeeeceeeee-eeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFL-LLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~-~t~~ 26 (169)
|++..|+|||||++.+..... ++.|
T Consensus 220 lvG~sG~GKSTLln~L~g~~~~~~~G 245 (358)
T 2rcn_A 220 FAGQSGVGKSSLLNALLGLQNEILTN 245 (358)
T ss_dssp EECCTTSSHHHHHHHHHCCSSCCCCC
T ss_pred EECCCCccHHHHHHHHhccccccccC
Confidence 567899999999998865555 5544
No 279
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=85.10 E-value=0.072 Score=35.85 Aligned_cols=20 Identities=5% Similarity=-0.169 Sum_probs=15.6
Q ss_pred ccccCCCCCceeeeeceeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLF 21 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~ 21 (169)
|.+..||||||+++.+....
T Consensus 11 l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 11 LSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EECSTTSCHHHHHHHHHHCT
T ss_pred EECCCCCCHHHHHHHHHHhh
Confidence 56789999999999764443
No 280
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=84.98 E-value=3.5 Score=29.20 Aligned_cols=66 Identities=20% Similarity=0.219 Sum_probs=42.1
Q ss_pred CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEE-EEEeCCCCC
Q 030931 36 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVIL-VFANKQDMK 107 (169)
Q Consensus 36 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii-vv~nK~Dl~ 107 (169)
.+.+.|+|+|+..... ........+|++|+|+.... .+...+...++.+.+ .+.+++ +|.|+.|..
T Consensus 191 ~yD~VIIDtpp~~~~~-d~~~l~~~aD~vilVv~~~~-~~~~~~~~~~~~l~~----~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 191 NYNFVIIDTPPVNTVT-DAQLFSKFTGNVVYVVNSEN-NNKDEVKKGKELIEA----TGAKLLGVVLNRMPKD 257 (271)
T ss_dssp HCSEEEEECCCTTTCS-HHHHHHHHHCEEEEEEETTS-CCHHHHHHHHHHHHT----TTCEEEEEEEEEECC-
T ss_pred CCCEEEEeCCCCchHH-HHHHHHHHCCEEEEEEeCCC-CcHHHHHHHHHHHHh----CCCCEEEEEEeCCcCC
Confidence 3668999999864332 22334567899999998743 455555555554432 245555 899999864
No 281
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=84.85 E-value=0.12 Score=36.87 Aligned_cols=25 Identities=4% Similarity=-0.227 Sum_probs=18.5
Q ss_pred ccccCCCCCceeeeeceee--eeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLL--FLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~--~~~t~~ 26 (169)
|++..|+|||||++-+..- +.|+.|
T Consensus 51 l~G~NGsGKSTLlk~l~Gl~~~~p~~G 77 (267)
T 2zu0_C 51 IMGPNGSGKSTLSATLAGREDYEVTGG 77 (267)
T ss_dssp EECCTTSSHHHHHHHHHTCTTCEEEEE
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCCCe
Confidence 5678999999999976554 345555
No 282
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=84.55 E-value=0.091 Score=34.93 Aligned_cols=19 Identities=16% Similarity=-0.104 Sum_probs=15.5
Q ss_pred ccccCCCCCceeeeeceee
Q 030931 2 LRVKQPYCTSCTLVKFYLL 20 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~ 20 (169)
|.+.+|||||||++.+...
T Consensus 14 l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 14 LSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEECTTSCHHHHHHHHHTC
T ss_pred EECCCCCCHHHHHHHHHhc
Confidence 5678999999999977543
No 283
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=84.26 E-value=0.03 Score=40.86 Aligned_cols=25 Identities=12% Similarity=-0.113 Sum_probs=15.5
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|+|||||+|.+.....++.|
T Consensus 178 lvG~sG~GKSTLln~L~g~~~~~~G 202 (307)
T 1t9h_A 178 FAGQSGVGKSSLLNAISPELGLRTN 202 (307)
T ss_dssp EEESHHHHHHHHHHHHCC-------
T ss_pred EECCCCCCHHHHHHHhccccccccc
Confidence 5678899999999988655555444
No 284
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=84.05 E-value=0.16 Score=34.82 Aligned_cols=24 Identities=4% Similarity=-0.258 Sum_probs=18.1
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|+|||||++-+... .|+.|
T Consensus 27 liG~nGsGKSTLl~~l~Gl-~p~~G 50 (208)
T 3b85_A 27 GLGPAGSGKTYLAMAKAVQ-ALQSK 50 (208)
T ss_dssp EECCTTSSTTHHHHHHHHH-HHHTT
T ss_pred EECCCCCCHHHHHHHHhcC-CCcCC
Confidence 5678999999999976554 45544
No 285
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=84.01 E-value=3.8 Score=28.54 Aligned_cols=70 Identities=11% Similarity=0.023 Sum_probs=41.1
Q ss_pred CEEEEEEEcCCCCCchhh-HHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCC
Q 030931 36 NVIFTVWDVGGQEKLRPL-WRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDM 106 (169)
Q Consensus 36 ~~~~~i~D~~G~~~~~~~-~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl 106 (169)
.+.+.|+|+||....... .......+|.+|++... +..++..+...++.+.......+.+ .-+|.|+.+.
T Consensus 115 ~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 186 (269)
T 1cp2_A 115 DLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKV 186 (269)
T ss_dssp TCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSS
T ss_pred CCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecC-chhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCc
Confidence 578999999986432222 12223579999999876 4455555544444332211112455 4688999874
No 286
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=83.87 E-value=0.12 Score=34.70 Aligned_cols=18 Identities=0% Similarity=-0.088 Sum_probs=14.7
Q ss_pred ccccCCCCCceeeeecee
Q 030931 2 LRVKQPYCTSCTLVKFYL 19 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~ 19 (169)
|.+..|||||||++.+..
T Consensus 12 l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 12 ISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp EECCTTSCHHHHHHHHHH
T ss_pred EECcCCCCHHHHHHHHHh
Confidence 567899999999997643
No 287
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=83.03 E-value=0.14 Score=34.75 Aligned_cols=16 Identities=13% Similarity=-0.037 Sum_probs=13.8
Q ss_pred ccccCCCCCceeeeec
Q 030931 2 LRVKQPYCTSCTLVKF 17 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f 17 (169)
|++..|+|||||++.+
T Consensus 25 l~GpnGsGKSTLl~~l 40 (207)
T 1znw_A 25 LSGPSAVGKSTVVRCL 40 (207)
T ss_dssp EECSTTSSHHHHHHHH
T ss_pred EECCCCCCHHHHHHHH
Confidence 5678999999999965
No 288
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=82.87 E-value=0.12 Score=38.56 Aligned_cols=25 Identities=4% Similarity=-0.324 Sum_probs=18.8
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|||||||++-+..-..|+.|
T Consensus 35 llGpsGsGKSTLLr~iaGl~~p~~G 59 (359)
T 3fvq_A 35 IIGASGCGKTTLLRCLAGFEQPDSG 59 (359)
T ss_dssp EEESTTSSHHHHHHHHHTSSCCSEE
T ss_pred EECCCCchHHHHHHHHhcCCCCCCc
Confidence 5678999999999976555555554
No 289
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=82.84 E-value=0.078 Score=38.66 Aligned_cols=25 Identities=12% Similarity=0.006 Sum_probs=18.8
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|.+..|||||||++-+..-+.|+.|
T Consensus 85 ivG~sGsGKSTLl~ll~gl~~p~~G 109 (306)
T 3nh6_A 85 LVGPSGAGKSTILRLLFRFYDISSG 109 (306)
T ss_dssp EESSSCHHHHHHHHHHTTSSCCSEE
T ss_pred EECCCCchHHHHHHHHHcCCCCCCc
Confidence 5678999999999966555555555
No 290
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=82.75 E-value=0.12 Score=38.60 Aligned_cols=25 Identities=12% Similarity=-0.227 Sum_probs=19.0
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|+|||||++-+..-..|+.|
T Consensus 59 IiGpnGaGKSTLlr~i~GL~~p~~G 83 (366)
T 3tui_C 59 VIGASGAGKSTLIRCVNLLERPTEG 83 (366)
T ss_dssp EECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred EEcCCCchHHHHHHHHhcCCCCCce
Confidence 5678999999999976555555555
No 291
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=82.75 E-value=0.12 Score=38.44 Aligned_cols=25 Identities=12% Similarity=-0.277 Sum_probs=18.5
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|||||||++-+..-..|+.|
T Consensus 46 llGpnGsGKSTLLr~iaGl~~p~~G 70 (355)
T 1z47_A 46 LLGPSGSGKTTILRLIAGLERPTKG 70 (355)
T ss_dssp EECSTTSSHHHHHHHHHTSSCCSEE
T ss_pred EECCCCCcHHHHHHHHhCCCCCCcc
Confidence 5778999999999966444445544
No 292
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=82.66 E-value=0.15 Score=34.49 Aligned_cols=16 Identities=25% Similarity=0.050 Sum_probs=13.7
Q ss_pred ccccCCCCCceeeeec
Q 030931 2 LRVKQPYCTSCTLVKF 17 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f 17 (169)
|.+..|+|||||++.+
T Consensus 9 lvGpsGaGKSTLl~~L 24 (198)
T 1lvg_A 9 LSGPSGAGKSTLLKKL 24 (198)
T ss_dssp EECCTTSSHHHHHHHH
T ss_pred EECCCCCCHHHHHHHH
Confidence 5678899999999965
No 293
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=82.35 E-value=0.15 Score=34.48 Aligned_cols=19 Identities=0% Similarity=-0.221 Sum_probs=15.0
Q ss_pred ccccCCCCCceeeeeceee
Q 030931 2 LRVKQPYCTSCTLVKFYLL 20 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~ 20 (169)
|.+..|||||||++.+...
T Consensus 11 i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 11 IAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEESTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 4678999999999966443
No 294
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=82.33 E-value=0.13 Score=38.36 Aligned_cols=25 Identities=12% Similarity=-0.029 Sum_probs=18.2
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|||||||++-+..-..|+.|
T Consensus 34 llGpnGsGKSTLLr~iaGl~~p~~G 58 (359)
T 2yyz_A 34 LLGPSGCGKTTTLLMLAGIYKPTSG 58 (359)
T ss_dssp EECSTTSSHHHHHHHHHTSSCCSEE
T ss_pred EEcCCCchHHHHHHHHHCCCCCCcc
Confidence 5778999999999965444444444
No 295
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=82.32 E-value=0.13 Score=38.41 Aligned_cols=25 Identities=12% Similarity=-0.121 Sum_probs=18.5
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|||||||++-+..-..|+.|
T Consensus 34 llGpnGsGKSTLLr~iaGl~~p~~G 58 (362)
T 2it1_A 34 LLGPSGSGKSTLLYTIAGIYKPTSG 58 (362)
T ss_dssp EECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred EECCCCchHHHHHHHHhcCCCCCce
Confidence 5778999999999966444445544
No 296
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=82.25 E-value=0.2 Score=32.23 Aligned_cols=18 Identities=11% Similarity=-0.051 Sum_probs=14.7
Q ss_pred ccccCCCCCceeeeecee
Q 030931 2 LRVKQPYCTSCTLVKFYL 19 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~ 19 (169)
|.+..|+|||+|++.+..
T Consensus 41 l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 41 VWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp EESSSTTTTCHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 467899999999997643
No 297
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=82.11 E-value=0.14 Score=38.47 Aligned_cols=25 Identities=16% Similarity=-0.230 Sum_probs=18.4
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|+|||||++-+..-..|+.|
T Consensus 34 llGpnGsGKSTLLr~iaGl~~p~~G 58 (372)
T 1g29_1 34 LLGPSGCGKTTTLRMIAGLEEPSRG 58 (372)
T ss_dssp EECSTTSSHHHHHHHHHTSSCCSEE
T ss_pred EECCCCcHHHHHHHHHHcCCCCCcc
Confidence 5778999999999966444445544
No 298
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=82.00 E-value=0.13 Score=34.18 Aligned_cols=17 Identities=18% Similarity=0.130 Sum_probs=14.3
Q ss_pred ccccCCCCCceeeeece
Q 030931 2 LRVKQPYCTSCTLVKFY 18 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~ 18 (169)
|.+..|+|||||++.+.
T Consensus 6 l~GpsGaGKsTl~~~L~ 22 (186)
T 3a00_A 6 ISGPSGTGKSTLLKKLF 22 (186)
T ss_dssp EESSSSSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 56789999999999764
No 299
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=81.97 E-value=0.14 Score=38.44 Aligned_cols=25 Identities=16% Similarity=-0.218 Sum_probs=17.2
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|||||||++-+..-..|+.|
T Consensus 42 llGpnGsGKSTLLr~iaGl~~p~~G 66 (372)
T 1v43_A 42 LLGPSGCGKTTTLRMIAGLEEPTEG 66 (372)
T ss_dssp EECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred EECCCCChHHHHHHHHHcCCCCCce
Confidence 5778999999999955333333333
No 300
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=81.84 E-value=0.12 Score=33.65 Aligned_cols=19 Identities=16% Similarity=-0.066 Sum_probs=15.1
Q ss_pred ccccCCCCCceeeeeceee
Q 030931 2 LRVKQPYCTSCTLVKFYLL 20 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~ 20 (169)
|.+.+||||||+.+.+...
T Consensus 6 l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 6 LEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EECSSSSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 4568999999999977443
No 301
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=81.51 E-value=8.4 Score=28.43 Aligned_cols=120 Identities=10% Similarity=-0.032 Sum_probs=54.5
Q ss_pred CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHH---HHHHHhcC------------CCCC-------
Q 030931 36 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQ---EFQAIIKD------------PFML------- 93 (169)
Q Consensus 36 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~---~~~~~~~~------------~~~~------- 93 (169)
.+.+.|+|+|..- .......+..||.+|++...+ ..++..+.. ++..+.+. ...+
T Consensus 153 ~yD~VIID~pP~l--~~~~~~aL~~aD~viip~~~~-~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (361)
T 3pg5_A 153 RYDVIFFDVGPSL--GPFNRTVLLGCDAFVTPTATD-LFSFHAFGNLARWFDAWVTQYAEIHEGNMAEWKKYSADVEAKT 229 (361)
T ss_dssp CCSEEEEECCSCC--SHHHHHHHTTCSEEEEEECCS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSTHHHHT
T ss_pred CCCEEEEECCCCc--CHHHHHHHHHCCEEEEEecCC-hHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCccccccc
Confidence 6889999999764 344555667799999999873 344433332 22222110 0001
Q ss_pred ------------CCeEEEEEeCCCCCCCCC-----------HhHHHhhh--------------------C----CCCCCC
Q 030931 94 ------------NSVILVFANKQDMKGAMT-----------PMEVCEGL--------------------G----LFDLKN 126 (169)
Q Consensus 94 ------------~~piivv~nK~Dl~~~~~-----------~~~~~~~~--------------------~----~~~~~~ 126 (169)
-..+=++.|..|...... .+.+.... . ....+.
T Consensus 230 ~~~~~~g~~~~~l~~lG~v~n~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~i~~~~s~~~~aq~ 309 (361)
T 3pg5_A 230 RPLRLGGFDGEGLRYLGYTTLEYVKRRANGQEQLVGAFERFRGRFAAEAERISNSLSKHSNSTLLGHVPHMHSMPATAQD 309 (361)
T ss_dssp SSSCTTSSSSSCCEEEEEEECC-----------------TTHHHHHHHHHHHHHHSCSSCCCCEEEECC-----------
T ss_pred cccccccccccccceeeEEEEcchhhcCCCchhhhHHHHHHHHHHHHHHHhccccccCCCCccccccCCchhhHHHHHHH
Confidence 123457889988754332 12222222 0 011245
Q ss_pred ceeEEEEeeecc---------CCCHHHHHHHHHHHHHhhhc
Q 030931 127 RKWHIQGTCALK---------GDGLYEGLDWLASTLKEMRA 158 (169)
Q Consensus 127 ~~~~~~~~Sa~~---------~~gi~~~~~~l~~~~~~~~~ 158 (169)
.+.|+|+.++.+ ..+..+.|..++..+.+...
T Consensus 310 ~~~Pi~~l~~~~~~~g~~~~~~~~~~~~~~~la~~i~~~~~ 350 (361)
T 3pg5_A 310 VHAPIMELSSSDRVRGAQINQRNAYAEKINSVAANVYKALF 350 (361)
T ss_dssp -----------------------CCHHHHHHHHHHHHHHHC
T ss_pred HCCCeEECchhcCCccHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 667888888755 55788899999988887653
No 302
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=81.45 E-value=5.1 Score=30.56 Aligned_cols=66 Identities=18% Similarity=0.135 Sum_probs=39.1
Q ss_pred CCEEEEEEEcCCCCCchh-hHH-----hhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCC
Q 030931 35 KNVIFTVWDVGGQEKLRP-LWR-----HYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMK 107 (169)
Q Consensus 35 ~~~~~~i~D~~G~~~~~~-~~~-----~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~ 107 (169)
.++.+.|+||||...... ... .....++.+++|+|.......- .....+.. ..+ .-++.||.|..
T Consensus 182 ~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~---~~~~~f~~-----~l~i~gvVlnK~D~~ 253 (433)
T 2xxa_A 182 KFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAA---NTAKAFNE-----ALPLTGVVLTKVDGD 253 (433)
T ss_dssp TTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHH---HHHHHHHH-----HSCCCCEEEECTTSS
T ss_pred CCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHH---HHHHHHhc-----cCCCeEEEEecCCCC
Confidence 467899999999765422 111 1234789999999986433221 12222211 233 34689999975
Q ss_pred C
Q 030931 108 G 108 (169)
Q Consensus 108 ~ 108 (169)
.
T Consensus 254 ~ 254 (433)
T 2xxa_A 254 A 254 (433)
T ss_dssp S
T ss_pred c
Confidence 3
No 303
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=81.44 E-value=0.15 Score=38.40 Aligned_cols=25 Identities=12% Similarity=-0.184 Sum_probs=18.9
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|||||||++-+..-..|+.|
T Consensus 34 llGpsGsGKSTLLr~iaGl~~p~~G 58 (381)
T 3rlf_A 34 FVGPSGCGKSTLLRMIAGLETITSG 58 (381)
T ss_dssp EECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred EEcCCCchHHHHHHHHHcCCCCCCe
Confidence 5778999999999976555555555
No 304
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=81.43 E-value=7.5 Score=27.76 Aligned_cols=68 Identities=9% Similarity=-0.084 Sum_probs=43.2
Q ss_pred CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030931 36 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG 108 (169)
Q Consensus 36 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~ 108 (169)
.+.+.|+|+|+..... ......+.+|++|+|+.... .+...+...++.+.+. ....+-+|.|+.|...
T Consensus 201 ~yD~VIIDtpp~~~~~-da~~l~~~aD~vllVv~~~~-~~~~~~~~~~~~l~~~---g~~~~GvVlN~v~~~~ 268 (286)
T 3la6_A 201 NYDLVLIDTPPILAVT-DAAIVGRHVGTTLMVARYAV-NTLKEVETSLSRFEQN---GIPVKGVILNSIFRRA 268 (286)
T ss_dssp HCSEEEEECCCTTTCT-HHHHHTTTCSEEEEEEETTT-SBHHHHHHHHHHHHHT---TCCCCEEEEEEECCCC
T ss_pred CCCEEEEcCCCCcchH-HHHHHHHHCCeEEEEEeCCC-CcHHHHHHHHHHHHhC---CCCEEEEEEcCccccc
Confidence 3568999999875432 23445677999999998743 3445554444444322 1345668899998643
No 305
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=81.29 E-value=0.13 Score=37.88 Aligned_cols=25 Identities=4% Similarity=-0.174 Sum_probs=18.5
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|.+..|||||||++.+.....|+.|
T Consensus 176 i~G~~GsGKTTll~~l~g~~~~~~g 200 (330)
T 2pt7_A 176 VCGGTGSGKTTYIKSIMEFIPKEER 200 (330)
T ss_dssp EEESTTSCHHHHHHHGGGGSCTTSC
T ss_pred EECCCCCCHHHHHHHHhCCCcCCCc
Confidence 4568999999999977555555444
No 306
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=81.24 E-value=0.15 Score=33.29 Aligned_cols=19 Identities=11% Similarity=-0.274 Sum_probs=15.1
Q ss_pred ccccCCCCCceeeeeceee
Q 030931 2 LRVKQPYCTSCTLVKFYLL 20 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~ 20 (169)
|.+..||||||+.+.+...
T Consensus 9 l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 9 LVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp EECCTTSCHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 4568999999999976443
No 307
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=81.16 E-value=0.17 Score=32.98 Aligned_cols=24 Identities=4% Similarity=-0.312 Sum_probs=17.1
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|+|||||++-+.... |+.|
T Consensus 38 L~G~nGaGKTTLlr~l~g~l-~~~G 61 (158)
T 1htw_A 38 LNGDLGAGKTTLTRGMLQGI-GHQG 61 (158)
T ss_dssp EECSTTSSHHHHHHHHHHHT-TCCS
T ss_pred EECCCCCCHHHHHHHHHHhC-CCCC
Confidence 56788999999999664443 4433
No 308
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=81.14 E-value=0.13 Score=33.72 Aligned_cols=18 Identities=11% Similarity=-0.258 Sum_probs=14.9
Q ss_pred ccccCCCCCceeeeecee
Q 030931 2 LRVKQPYCTSCTLVKFYL 19 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~ 19 (169)
|.+-+||||||+.+++..
T Consensus 7 i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 7 TIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EecCCCCCHHHHHHHHHh
Confidence 456899999999998754
No 309
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=80.70 E-value=0.69 Score=29.25 Aligned_cols=19 Identities=11% Similarity=-0.228 Sum_probs=15.2
Q ss_pred ccccCCCCCceeeeeceee
Q 030931 2 LRVKQPYCTSCTLVKFYLL 20 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~ 20 (169)
|.+.+|+|||++.+.+...
T Consensus 32 l~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 32 LTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp EEEETTCCHHHHHGGGCCT
T ss_pred EECCCCccHHHHHHHHHHh
Confidence 5579999999999877544
No 310
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=80.70 E-value=0.19 Score=33.12 Aligned_cols=20 Identities=5% Similarity=-0.193 Sum_probs=15.5
Q ss_pred ccccCCCCCceeeeeceeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLF 21 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~ 21 (169)
|.+.+|+|||+|++.+....
T Consensus 43 l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 43 FVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp ECCSSSSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 45789999999999764443
No 311
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=80.68 E-value=0.13 Score=33.28 Aligned_cols=16 Identities=6% Similarity=-0.282 Sum_probs=13.9
Q ss_pred ccccCCCCCceeeeec
Q 030931 2 LRVKQPYCTSCTLVKF 17 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f 17 (169)
|.+-+||||||+.+.+
T Consensus 6 l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 6 ITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EECCTTSCHHHHHHHH
T ss_pred EECCCCCCHHHHHHHH
Confidence 4568999999999987
No 312
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=80.60 E-value=0.21 Score=34.43 Aligned_cols=20 Identities=10% Similarity=-0.094 Sum_probs=10.8
Q ss_pred ccccCCCCCceeeeece-eee
Q 030931 2 LRVKQPYCTSCTLVKFY-LLF 21 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~-~~~ 21 (169)
|.+..|+|||||++.+. ...
T Consensus 32 l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 32 LSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EECSCC----CHHHHHHC---
T ss_pred EECCCCCCHHHHHHHHHhcCC
Confidence 56789999999999876 543
No 313
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=80.51 E-value=0.19 Score=33.34 Aligned_cols=17 Identities=12% Similarity=-0.048 Sum_probs=14.5
Q ss_pred ccccCCCCCceeeeece
Q 030931 2 LRVKQPYCTSCTLVKFY 18 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~ 18 (169)
|.+..|+|||||++.+.
T Consensus 7 l~G~~GaGKSTl~~~L~ 23 (189)
T 2bdt_A 7 ITGPAGVGKSTTCKRLA 23 (189)
T ss_dssp EECSTTSSHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHh
Confidence 56789999999999874
No 314
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=80.34 E-value=0.17 Score=34.99 Aligned_cols=17 Identities=12% Similarity=-0.007 Sum_probs=14.2
Q ss_pred ccccCCCCCceeeeece
Q 030931 2 LRVKQPYCTSCTLVKFY 18 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~ 18 (169)
|++..|+|||||++.+.
T Consensus 35 l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 35 LTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EECCTTSSHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHH
Confidence 56789999999999653
No 315
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=80.22 E-value=0.2 Score=34.35 Aligned_cols=18 Identities=6% Similarity=-0.105 Sum_probs=14.6
Q ss_pred ccccCCCCCceeeeecee
Q 030931 2 LRVKQPYCTSCTLVKFYL 19 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~ 19 (169)
|++..|+|||||++.+..
T Consensus 28 lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 28 ICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHh
Confidence 567899999999997643
No 316
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=79.66 E-value=0.22 Score=35.31 Aligned_cols=18 Identities=17% Similarity=-0.042 Sum_probs=14.5
Q ss_pred ccccCCCCCceeeeecee
Q 030931 2 LRVKQPYCTSCTLVKFYL 19 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~ 19 (169)
|++..|+|||||++-+..
T Consensus 51 i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 51 LVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp EECSTTSSHHHHHHHHTT
T ss_pred EECCCCCCHHHHHHHHhc
Confidence 567899999999996533
No 317
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=79.51 E-value=0.17 Score=37.81 Aligned_cols=16 Identities=19% Similarity=-0.045 Sum_probs=13.8
Q ss_pred ccccCCCCCceeeeec
Q 030931 2 LRVKQPYCTSCTLVKF 17 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f 17 (169)
|++.+|||||||+.++
T Consensus 38 llG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 38 LLGAGESGKSTFLKQM 53 (362)
T ss_dssp EECSTTSSHHHHHHHH
T ss_pred EECCCCCcHHHHHHHH
Confidence 6779999999999864
No 318
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=79.51 E-value=0.22 Score=34.37 Aligned_cols=17 Identities=6% Similarity=-0.007 Sum_probs=14.2
Q ss_pred ccccCCCCCceeeeece
Q 030931 2 LRVKQPYCTSCTLVKFY 18 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~ 18 (169)
|.+..|+|||||++.+.
T Consensus 21 l~GpsGsGKSTLlk~L~ 37 (219)
T 1s96_A 21 VSAPSGAGKSSLIQALL 37 (219)
T ss_dssp EECCTTSCHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHh
Confidence 56788999999999763
No 319
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=79.39 E-value=0.11 Score=38.49 Aligned_cols=25 Identities=4% Similarity=-0.282 Sum_probs=18.4
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|+|||||++-+..-..|+.|
T Consensus 31 llGpnGsGKSTLLr~iaGl~~p~~G 55 (348)
T 3d31_A 31 ILGPTGAGKTLFLELIAGFHVPDSG 55 (348)
T ss_dssp EECCCTHHHHHHHHHHHTSSCCSEE
T ss_pred EECCCCccHHHHHHHHHcCCCCCCc
Confidence 5778999999999966444445544
No 320
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=79.31 E-value=6.1 Score=27.92 Aligned_cols=70 Identities=14% Similarity=0.065 Sum_probs=39.8
Q ss_pred CEEEEEEEcCCCCCchhh-HHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCC
Q 030931 36 NVIFTVWDVGGQEKLRPL-WRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDM 106 (169)
Q Consensus 36 ~~~~~i~D~~G~~~~~~~-~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl 106 (169)
.+.+.|+|+||....... .......+|.++++... +..++..+...++.+.......+.+ .-+|.|+.+.
T Consensus 118 ~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 189 (289)
T 2afh_E 118 DLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSG-EMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNT 189 (289)
T ss_dssp TCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECS-SHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCC
T ss_pred CCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecC-CHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCc
Confidence 578999999986432211 12223579999999876 4445554444333332110112445 4688899863
No 321
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=79.22 E-value=0.19 Score=32.90 Aligned_cols=16 Identities=13% Similarity=-0.124 Sum_probs=13.6
Q ss_pred ccccCCCCCceeeeec
Q 030931 2 LRVKQPYCTSCTLVKF 17 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f 17 (169)
|.+.+||||||+.+.+
T Consensus 13 l~G~~GsGKSTl~~~l 28 (175)
T 1knq_A 13 LMGVSGSGKSAVASEV 28 (175)
T ss_dssp EECSTTSCHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHH
Confidence 5578999999999865
No 322
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=79.12 E-value=0.19 Score=33.80 Aligned_cols=18 Identities=0% Similarity=-0.368 Sum_probs=14.5
Q ss_pred ccccCCCCCceeeeecee
Q 030931 2 LRVKQPYCTSCTLVKFYL 19 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~ 19 (169)
|.+..|||||||++.+..
T Consensus 34 l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 34 VMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp EECCTTSCHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 467899999999997643
No 323
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=79.09 E-value=3.2 Score=29.51 Aligned_cols=69 Identities=7% Similarity=-0.037 Sum_probs=41.9
Q ss_pred CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHH---HHHHHhcCCCCCCCe-EEEEEeCCCCCC
Q 030931 36 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQ---EFQAIIKDPFMLNSV-ILVFANKQDMKG 108 (169)
Q Consensus 36 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~---~~~~~~~~~~~~~~p-iivv~nK~Dl~~ 108 (169)
.+.+.|+|+|+..... ....+..+|.+|+++..+ ..+...+.. ++..+.+.. ..+.+ +-+|.|+.|...
T Consensus 154 ~yD~IiiD~pp~~~~~--~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~-~~~~~~~gvv~n~~~~~~ 226 (298)
T 2oze_A 154 DYDLIIIDTVPTPSVY--TNNAIVASDYVMIPLQAE-EESTNNIQNYISYLIDLQEQF-NPGLDMIGFVPYLVDTDS 226 (298)
T ss_dssp GCSEEEEEECSSCSHH--HHHHHHHCSEEEEEECGG-GCCHHHHHHHHHHHHHHHHHH-CTTCEEEEEEEEESCTTC
T ss_pred CCCEEEEECCCCccHH--HHHHHHHCCeEEEEecCc-HHHHHHHHHHHHHHHHHHHHh-CCCCeEEEEEEEEECCCc
Confidence 4778999999875432 233455699999999763 334444433 333332111 13566 458999999643
No 324
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=79.08 E-value=0.28 Score=39.06 Aligned_cols=25 Identities=16% Similarity=-0.065 Sum_probs=19.0
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|.+..|||||||++-+..-+.|+.|
T Consensus 375 ivG~sGsGKSTLl~~l~g~~~p~~G 399 (595)
T 2yl4_A 375 LVGPSGSGKSTVLSLLLRLYDPASG 399 (595)
T ss_dssp EECCTTSSSTHHHHHHTTSSCCSEE
T ss_pred EECCCCCCHHHHHHHHhcCcCCCCc
Confidence 4678999999999976555556555
No 325
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=78.94 E-value=0.25 Score=39.17 Aligned_cols=25 Identities=4% Similarity=-0.208 Sum_probs=19.6
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|.+..|||||||++-+...+.|+.|
T Consensus 372 ivG~sGsGKSTll~~l~g~~~p~~G 396 (578)
T 4a82_A 372 FVGMSGGGKSTLINLIPRFYDVTSG 396 (578)
T ss_dssp EECSTTSSHHHHHTTTTTSSCCSEE
T ss_pred EECCCCChHHHHHHHHhcCCCCCCc
Confidence 4678999999999977666666655
No 326
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=78.92 E-value=0.24 Score=35.10 Aligned_cols=22 Identities=9% Similarity=-0.106 Sum_probs=16.0
Q ss_pred ccccCCCCCceeeeeceeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLL 23 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~ 23 (169)
|.+..|||||||++.+...+.|
T Consensus 30 i~Gp~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 30 VTGPTGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp EECSTTCSHHHHHHHHHHHHHH
T ss_pred EECCCCccHHHHHHHHHHhCCC
Confidence 4568999999999976443333
No 327
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=78.71 E-value=0.28 Score=39.04 Aligned_cols=25 Identities=4% Similarity=-0.156 Sum_probs=19.2
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|.+..|||||||++-+..-+.|+.|
T Consensus 386 ivG~sGsGKSTll~~l~g~~~p~~G 410 (598)
T 3qf4_B 386 LVGPTGSGKTTIVNLLMRFYDVDRG 410 (598)
T ss_dssp EECCTTSSTTHHHHHHTTSSCCSEE
T ss_pred EECCCCCcHHHHHHHHhcCcCCCCe
Confidence 4678999999999976555666655
No 328
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=78.58 E-value=0.17 Score=34.14 Aligned_cols=18 Identities=6% Similarity=-0.141 Sum_probs=14.4
Q ss_pred ccccCCCCCceeeeecee
Q 030931 2 LRVKQPYCTSCTLVKFYL 19 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~ 19 (169)
|.+-+|||||||.+++..
T Consensus 17 l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 17 VCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp EECCTTSCHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 456899999999997643
No 329
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=78.46 E-value=0.22 Score=36.67 Aligned_cols=16 Identities=13% Similarity=-0.060 Sum_probs=13.3
Q ss_pred ccccCCCCCceeeeec
Q 030931 2 LRVKQPYCTSCTLVKF 17 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f 17 (169)
|++.++|||||++.+.
T Consensus 12 lLG~geSGKSTi~KQm 27 (327)
T 3ohm_A 12 LLGTGESGKSTFIKQM 27 (327)
T ss_dssp EECSTTSSHHHHHHHH
T ss_pred EEcCCCccHHHHHHHH
Confidence 5678889999999853
No 330
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=78.36 E-value=0.18 Score=33.73 Aligned_cols=18 Identities=6% Similarity=-0.247 Sum_probs=14.7
Q ss_pred ccccCCCCCceeeeecee
Q 030931 2 LRVKQPYCTSCTLVKFYL 19 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~ 19 (169)
|.+.+||||||+.+.+..
T Consensus 5 i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 5 IFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EECCTTSCHHHHHHHHHH
T ss_pred EECCCccCHHHHHHHHHH
Confidence 456899999999997644
No 331
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=78.18 E-value=0.21 Score=33.53 Aligned_cols=18 Identities=6% Similarity=-0.339 Sum_probs=14.5
Q ss_pred ccccCCCCCceeeeecee
Q 030931 2 LRVKQPYCTSCTLVKFYL 19 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~ 19 (169)
|.+-+||||||+.+.+..
T Consensus 23 l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 23 VMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp EECSTTSCHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 456899999999997643
No 332
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=78.11 E-value=0.24 Score=36.91 Aligned_cols=25 Identities=4% Similarity=-0.112 Sum_probs=18.2
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|.+..|||||||++.+...+.|+.|
T Consensus 180 ivG~sGsGKSTll~~l~~~~~~~~g 204 (361)
T 2gza_A 180 VAGETGSGKTTLMKALMQEIPFDQR 204 (361)
T ss_dssp EEESSSSCHHHHHHHHHTTSCTTSC
T ss_pred EECCCCCCHHHHHHHHHhcCCCCce
Confidence 4568999999999976555555444
No 333
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=78.02 E-value=0.25 Score=34.11 Aligned_cols=19 Identities=11% Similarity=-0.048 Sum_probs=15.4
Q ss_pred ccccCCCCCceeeeeceee
Q 030931 2 LRVKQPYCTSCTLVKFYLL 20 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~ 20 (169)
|.+..|||||||++.+...
T Consensus 25 i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 25 IEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EECSTTSCHHHHHHTTGGG
T ss_pred EECCCCCCHHHHHHHHHhc
Confidence 4578999999999977544
No 334
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=77.84 E-value=0.25 Score=33.21 Aligned_cols=16 Identities=13% Similarity=-0.070 Sum_probs=13.7
Q ss_pred ccccCCCCCceeeeec
Q 030931 2 LRVKQPYCTSCTLVKF 17 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f 17 (169)
|.+..|+|||||++.+
T Consensus 6 i~G~nG~GKTTll~~l 21 (189)
T 2i3b_A 6 LTGPPGVGKTTLIHKA 21 (189)
T ss_dssp EESCCSSCHHHHHHHH
T ss_pred EECCCCChHHHHHHHH
Confidence 5678999999999854
No 335
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=77.82 E-value=0.23 Score=36.88 Aligned_cols=16 Identities=13% Similarity=-0.058 Sum_probs=13.8
Q ss_pred ccccCCCCCceeeeec
Q 030931 2 LRVKQPYCTSCTLVKF 17 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f 17 (169)
|++.++|||||++.++
T Consensus 37 lLG~geSGKST~~KQm 52 (353)
T 1cip_A 37 LLGAGESGKSTIVKQM 52 (353)
T ss_dssp EECSTTSSHHHHHHHH
T ss_pred EEcCCCCCchhHHHHH
Confidence 6778999999999964
No 336
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=77.78 E-value=0.27 Score=33.54 Aligned_cols=17 Identities=0% Similarity=-0.330 Sum_probs=14.4
Q ss_pred ccccCCCCCceeeeece
Q 030931 2 LRVKQPYCTSCTLVKFY 18 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~ 18 (169)
|.+..|+|||||++.+.
T Consensus 30 l~G~nGsGKSTll~~l~ 46 (231)
T 4a74_A 30 VFGEFGSGKTQLAHTLA 46 (231)
T ss_dssp EEESTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 56789999999999763
No 337
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=77.74 E-value=0.13 Score=38.18 Aligned_cols=24 Identities=13% Similarity=-0.011 Sum_probs=18.4
Q ss_pred ccccCCCCCceeeeeceeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLV 25 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~ 25 (169)
|++..|+|||||++.+...+.|+.
T Consensus 175 IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 175 ILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp EECCTTSHHHHHHHHHHHHTTCEE
T ss_pred EECCCCCCHHHHHHHHHHHhCCCc
Confidence 567899999999997755555554
No 338
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=77.71 E-value=0.23 Score=33.54 Aligned_cols=18 Identities=0% Similarity=-0.202 Sum_probs=14.6
Q ss_pred ccccCCCCCceeeeecee
Q 030931 2 LRVKQPYCTSCTLVKFYL 19 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~ 19 (169)
|.+..|||||||++.+..
T Consensus 27 i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 27 IDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp EEECTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 456899999999997644
No 339
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=77.57 E-value=0.19 Score=33.21 Aligned_cols=18 Identities=17% Similarity=-0.079 Sum_probs=14.6
Q ss_pred ccccCCCCCceeeeecee
Q 030931 2 LRVKQPYCTSCTLVKFYL 19 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~ 19 (169)
|.+-+||||||+.+.+..
T Consensus 6 i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 6 VTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEECTTSCHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 456899999999997744
No 340
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=77.07 E-value=0.22 Score=37.08 Aligned_cols=16 Identities=13% Similarity=-0.066 Sum_probs=13.8
Q ss_pred ccccCCCCCceeeeec
Q 030931 2 LRVKQPYCTSCTLVKF 17 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f 17 (169)
|++.+||||||++.++
T Consensus 14 llG~~~sGKsT~~kq~ 29 (354)
T 2xtz_A 14 LLGAGESGKSTIFKQI 29 (354)
T ss_dssp EECSTTSSHHHHHHHH
T ss_pred EECCCCCcHHHHHHHH
Confidence 6778999999999964
No 341
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=77.03 E-value=0.2 Score=32.74 Aligned_cols=17 Identities=6% Similarity=-0.101 Sum_probs=14.0
Q ss_pred ccccCCCCCceeeeece
Q 030931 2 LRVKQPYCTSCTLVKFY 18 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~ 18 (169)
|.+.+|+|||+|++.+.
T Consensus 48 l~G~~G~GKT~l~~~~~ 64 (195)
T 1jbk_A 48 LIGEPGVGKTAIVEGLA 64 (195)
T ss_dssp EECCTTSCHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 45689999999999763
No 342
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=77.00 E-value=0.29 Score=35.68 Aligned_cols=22 Identities=14% Similarity=-0.076 Sum_probs=16.4
Q ss_pred ccccCCCCCceeeeeceeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLL 23 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~ 23 (169)
|.+..|||||||++.+.....|
T Consensus 95 I~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 95 VAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp EECCTTSCHHHHHHHHHHHHHT
T ss_pred EECCCCchHHHHHHHHHhhccc
Confidence 4578999999999976444434
No 343
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=76.88 E-value=0.26 Score=36.51 Aligned_cols=15 Identities=13% Similarity=-0.152 Sum_probs=13.1
Q ss_pred ccccCCCCCceeeee
Q 030931 2 LRVKQPYCTSCTLVK 16 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~ 16 (169)
||+.++|||||++.+
T Consensus 10 LLG~geSGKSTi~KQ 24 (340)
T 4fid_A 10 LLGSGESGKSTIAKQ 24 (340)
T ss_dssp EEECTTSSHHHHHHH
T ss_pred EECCCCCcHHHHHHH
Confidence 677899999999985
No 344
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=76.80 E-value=0.24 Score=36.77 Aligned_cols=25 Identities=8% Similarity=-0.289 Sum_probs=19.5
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|+|||||++.+.....|+.+
T Consensus 76 IiG~nGaGKTTLl~~I~g~~~~~~g 100 (347)
T 2obl_A 76 IFAGSGVGKSTLLGMICNGASADII 100 (347)
T ss_dssp EEECTTSSHHHHHHHHHHHSCCSEE
T ss_pred EECCCCCCHHHHHHHHhcCCCCCEE
Confidence 5678999999999987666556654
No 345
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=76.77 E-value=0.22 Score=33.97 Aligned_cols=16 Identities=13% Similarity=0.036 Sum_probs=13.7
Q ss_pred ccccCCCCCceeeeec
Q 030931 2 LRVKQPYCTSCTLVKF 17 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f 17 (169)
|.+.+|+|||||+..+
T Consensus 28 i~G~~GsGKTtl~~~l 43 (235)
T 2w0m_A 28 LTGEPGTGKTIFSLHF 43 (235)
T ss_dssp EECSTTSSHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHH
Confidence 4578999999999976
No 346
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=76.64 E-value=0.35 Score=37.86 Aligned_cols=25 Identities=8% Similarity=0.001 Sum_probs=17.8
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|.+..|||||||++.+.....|+.+
T Consensus 265 I~GptGSGKTTlL~aL~~~i~~~~g 289 (511)
T 2oap_1 265 VVGETASGKTTTLNAIMMFIPPDAK 289 (511)
T ss_dssp EEESTTSSHHHHHHHHGGGSCTTCC
T ss_pred EECCCCCCHHHHHHHHHhhCCCCCC
Confidence 4578999999999976444444444
No 347
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=76.62 E-value=0.26 Score=39.14 Aligned_cols=25 Identities=8% Similarity=-0.145 Sum_probs=19.0
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|.+..|||||||++-+..-+.|+.|
T Consensus 374 ivG~sGsGKSTLl~~l~g~~~p~~G 398 (582)
T 3b60_A 374 LVGRSGSGKSTIASLITRFYDIDEG 398 (582)
T ss_dssp EEECTTSSHHHHHHHHTTTTCCSEE
T ss_pred EECCCCCCHHHHHHHHhhccCCCCC
Confidence 4678999999999976555556555
No 348
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=76.54 E-value=0.22 Score=33.15 Aligned_cols=19 Identities=5% Similarity=-0.144 Sum_probs=15.3
Q ss_pred ccccCCCCCceeeeeceee
Q 030931 2 LRVKQPYCTSCTLVKFYLL 20 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~ 20 (169)
|.+.+||||||+.+.+...
T Consensus 5 l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 5 FEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EECSTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 4568999999999987544
No 349
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=76.50 E-value=0.21 Score=32.91 Aligned_cols=17 Identities=0% Similarity=-0.189 Sum_probs=14.1
Q ss_pred ccccCCCCCceeeeece
Q 030931 2 LRVKQPYCTSCTLVKFY 18 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~ 18 (169)
|.+.+||||||+.+.+.
T Consensus 9 l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 9 FLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EECCTTSCHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 45689999999998764
No 350
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=76.45 E-value=0.22 Score=33.78 Aligned_cols=18 Identities=6% Similarity=-0.241 Sum_probs=14.7
Q ss_pred ccccCCCCCceeeeecee
Q 030931 2 LRVKQPYCTSCTLVKFYL 19 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~ 19 (169)
|.+.+||||||+.+.+..
T Consensus 5 l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 5 LMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 467899999999987733
No 351
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=76.43 E-value=0.12 Score=38.52 Aligned_cols=25 Identities=4% Similarity=-0.277 Sum_probs=18.5
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|+|||||++-+..-..|+.|
T Consensus 36 llGpnGsGKSTLLr~iaGl~~p~~G 60 (353)
T 1oxx_K 36 ILGPSGAGKTTFMRIIAGLDVPSTG 60 (353)
T ss_dssp EECSCHHHHHHHHHHHHTSSCCSEE
T ss_pred EECCCCCcHHHHHHHHhCCCCCCce
Confidence 5678999999999966544445544
No 352
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=76.29 E-value=0.26 Score=33.17 Aligned_cols=18 Identities=11% Similarity=-0.217 Sum_probs=14.8
Q ss_pred ccccCCCCCceeeeecee
Q 030931 2 LRVKQPYCTSCTLVKFYL 19 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~ 19 (169)
|.+..||||||+.+.+..
T Consensus 7 l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 7 LTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EECSTTSCHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 556899999999997744
No 353
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=75.76 E-value=0.27 Score=32.35 Aligned_cols=16 Identities=6% Similarity=-0.298 Sum_probs=13.3
Q ss_pred ccccCCCCCceeeeec
Q 030931 2 LRVKQPYCTSCTLVKF 17 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f 17 (169)
|.+..|+|||||+..+
T Consensus 31 i~G~NGsGKStll~ai 46 (182)
T 3kta_A 31 IVGANGSGKSNIGDAI 46 (182)
T ss_dssp EEECTTSSHHHHHHHH
T ss_pred EECCCCCCHHHHHHHH
Confidence 5678999999999854
No 354
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=75.63 E-value=0.24 Score=33.31 Aligned_cols=19 Identities=5% Similarity=-0.230 Sum_probs=15.1
Q ss_pred ccccCCCCCceeeeeceee
Q 030931 2 LRVKQPYCTSCTLVKFYLL 20 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~ 20 (169)
|.+.+||||||+.+.+...
T Consensus 9 i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 9 FEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EECCTTSSHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHH
Confidence 4568999999999977443
No 355
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=75.61 E-value=0.28 Score=38.93 Aligned_cols=25 Identities=12% Similarity=-0.083 Sum_probs=18.6
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|.+..|||||||++-+..-+.|+.|
T Consensus 374 ivG~sGsGKSTll~~l~g~~~p~~G 398 (582)
T 3b5x_A 374 LVGRSGSGKSTIANLFTRFYDVDSG 398 (582)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCC
Confidence 4678999999999966555555555
No 356
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=75.48 E-value=0.24 Score=33.15 Aligned_cols=20 Identities=0% Similarity=-0.125 Sum_probs=16.0
Q ss_pred ccccCCCCCceeeeeceeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLF 21 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~ 21 (169)
|.+.+||||||+.+.+....
T Consensus 9 l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 9 FEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp EECCTTSSHHHHHHHHHHTS
T ss_pred EEcCCCCCHHHHHHHHHHHH
Confidence 45689999999999875543
No 357
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=75.47 E-value=0.24 Score=33.67 Aligned_cols=17 Identities=12% Similarity=-0.177 Sum_probs=14.1
Q ss_pred ccccCCCCCceeeeece
Q 030931 2 LRVKQPYCTSCTLVKFY 18 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~ 18 (169)
|.+..|+|||||++.+.
T Consensus 24 l~GPSGaGKsTL~~~L~ 40 (197)
T 3ney_A 24 LIGASGVGRSHIKNALL 40 (197)
T ss_dssp EECCTTSSHHHHHHHHH
T ss_pred EECcCCCCHHHHHHHHH
Confidence 45689999999999763
No 358
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=75.17 E-value=0.25 Score=32.75 Aligned_cols=18 Identities=0% Similarity=-0.193 Sum_probs=14.5
Q ss_pred ccccCCCCCceeeeecee
Q 030931 2 LRVKQPYCTSCTLVKFYL 19 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~ 19 (169)
|.+-+||||||+.+.+..
T Consensus 10 l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 10 VTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEESTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 456899999999997744
No 359
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=75.05 E-value=0.3 Score=33.03 Aligned_cols=18 Identities=6% Similarity=-0.173 Sum_probs=14.8
Q ss_pred ccccCCCCCceeeeecee
Q 030931 2 LRVKQPYCTSCTLVKFYL 19 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~ 19 (169)
|.+.+|+|||+|+..+..
T Consensus 25 i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 25 VYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 456899999999997743
No 360
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=74.97 E-value=0.25 Score=32.67 Aligned_cols=18 Identities=0% Similarity=-0.226 Sum_probs=14.5
Q ss_pred ccccCCCCCceeeeecee
Q 030931 2 LRVKQPYCTSCTLVKFYL 19 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~ 19 (169)
|.+.+||||||+.+.+..
T Consensus 8 l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 8 VLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 456899999999987643
No 361
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=74.94 E-value=0.3 Score=33.15 Aligned_cols=20 Identities=5% Similarity=-0.227 Sum_probs=15.4
Q ss_pred ccccCCCCCceeeeeceeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLF 21 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~ 21 (169)
|.+-.|+|||||++.+....
T Consensus 13 l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 13 LSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp EECCTTSCHHHHHHHHHHST
T ss_pred EECcCCCCHHHHHHHHHhhC
Confidence 45689999999999764433
No 362
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=74.91 E-value=0.3 Score=33.29 Aligned_cols=16 Identities=0% Similarity=-0.211 Sum_probs=13.6
Q ss_pred ccccCCCCCceeeeec
Q 030931 2 LRVKQPYCTSCTLVKF 17 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f 17 (169)
|.+..||||||+.+.+
T Consensus 10 i~G~~GsGKSTl~~~L 25 (227)
T 1cke_A 10 IDGPSGAGKGTLCKAM 25 (227)
T ss_dssp EECCTTSSHHHHHHHH
T ss_pred EECCCCCCHHHHHHHH
Confidence 4568999999999965
No 363
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=74.84 E-value=0.37 Score=38.31 Aligned_cols=25 Identities=8% Similarity=-0.269 Sum_probs=18.8
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|.+..|||||||++-+..-+.|+.|
T Consensus 374 ivG~sGsGKSTll~~l~g~~~~~~G 398 (587)
T 3qf4_A 374 VLGETGSGKSTLMNLIPRLIDPERG 398 (587)
T ss_dssp EECSSSSSHHHHHHTTTTSSCCSEE
T ss_pred EECCCCCCHHHHHHHHhCCccCCCc
Confidence 4578999999999976555555555
No 364
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=74.70 E-value=0.3 Score=32.75 Aligned_cols=18 Identities=17% Similarity=-0.082 Sum_probs=14.2
Q ss_pred ccccCCCCCceeeeecee
Q 030931 2 LRVKQPYCTSCTLVKFYL 19 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~ 19 (169)
|.+..||||||+.+.+..
T Consensus 6 i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 6 LTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEECTTSSHHHHHHHHHH
T ss_pred EECCCCcCHHHHHHHHHH
Confidence 345899999999987644
No 365
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=74.60 E-value=0.37 Score=33.57 Aligned_cols=18 Identities=11% Similarity=-0.123 Sum_probs=14.6
Q ss_pred ccccCCCCCceeeeecee
Q 030931 2 LRVKQPYCTSCTLVKFYL 19 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~ 19 (169)
|.+..|||||||++.+..
T Consensus 30 I~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 30 VSGGTASGKSTVCEKIME 47 (245)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 457899999999997643
No 366
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=74.40 E-value=0.38 Score=34.89 Aligned_cols=21 Identities=14% Similarity=-0.043 Sum_probs=16.3
Q ss_pred ccccCCCCCceeeeeceeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFL 22 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~ 22 (169)
|.+..|||||||++.+.....
T Consensus 85 I~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 85 IAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEECTTSSHHHHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHHHHh
Confidence 467899999999997755433
No 367
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=74.36 E-value=0.31 Score=32.21 Aligned_cols=18 Identities=11% Similarity=0.017 Sum_probs=14.7
Q ss_pred ccccCCCCCceeeeecee
Q 030931 2 LRVKQPYCTSCTLVKFYL 19 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~ 19 (169)
|.+.+||||||+.+.+..
T Consensus 5 l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 5 FEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EECSTTSCHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 456899999999997754
No 368
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=74.27 E-value=0.33 Score=36.76 Aligned_cols=16 Identities=13% Similarity=-0.058 Sum_probs=14.0
Q ss_pred ccccCCCCCceeeeec
Q 030931 2 LRVKQPYCTSCTLVKF 17 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f 17 (169)
||+.++|||||++.+.
T Consensus 45 LLG~geSGKSTi~KQm 60 (402)
T 1azs_C 45 LLGAGESGKSTIVKQM 60 (402)
T ss_dssp EEESTTSSHHHHHHHH
T ss_pred EecCCCCchhhHHHHH
Confidence 6778999999999975
No 369
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=74.25 E-value=0.27 Score=33.35 Aligned_cols=18 Identities=6% Similarity=-0.285 Sum_probs=14.6
Q ss_pred ccccCCCCCceeeeecee
Q 030931 2 LRVKQPYCTSCTLVKFYL 19 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~ 19 (169)
|.+.+||||||+.+.+..
T Consensus 5 l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 5 LMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 457899999999987633
No 370
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=73.94 E-value=0.33 Score=32.74 Aligned_cols=19 Identities=0% Similarity=-0.228 Sum_probs=14.7
Q ss_pred ccccCCCCCceeeeeceee
Q 030931 2 LRVKQPYCTSCTLVKFYLL 20 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~ 20 (169)
|.+.+||||||+.+.+...
T Consensus 26 i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 26 ISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp EEESTTSSHHHHHHHHHTT
T ss_pred EECCCCCCHHHHHHHHHHh
Confidence 4568899999999976443
No 371
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=73.92 E-value=0.073 Score=35.31 Aligned_cols=23 Identities=0% Similarity=-0.067 Sum_probs=17.4
Q ss_pred ccccCCCCCceeeeeceeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLL 24 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t 24 (169)
|.+..|||||||++.+...+.|+
T Consensus 7 IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 7 IVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp EEESCHHHHHHHHHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHHHhhhc
Confidence 44578999999999876555554
No 372
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=73.80 E-value=0.28 Score=33.64 Aligned_cols=23 Identities=4% Similarity=-0.013 Sum_probs=17.3
Q ss_pred EEEeeeccCCCHHHHHHHHHHHHHhh
Q 030931 131 IQGTCALKGDGLYEGLDWLASTLKEM 156 (169)
Q Consensus 131 ~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (169)
++.+.+. .++++++.+...+.+.
T Consensus 193 ~~~id~~---~~~~v~~~i~~~l~~~ 215 (227)
T 1zd8_A 193 LETFSGT---ETNKIWPYVYAFLQTK 215 (227)
T ss_dssp EEEEECS---SHHHHHHHHHHHHTTT
T ss_pred EEEEeCC---CHHHHHHHHHHHHHhh
Confidence 5666664 6899999998887654
No 373
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=73.76 E-value=0.28 Score=32.37 Aligned_cols=18 Identities=0% Similarity=-0.302 Sum_probs=14.3
Q ss_pred ccccCCCCCceeeeecee
Q 030931 2 LRVKQPYCTSCTLVKFYL 19 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~ 19 (169)
|.+-+||||||+.+.+..
T Consensus 8 i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 8 VTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp EECCTTSCHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 445899999999997643
No 374
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=73.69 E-value=11 Score=27.11 Aligned_cols=66 Identities=6% Similarity=-0.163 Sum_probs=39.5
Q ss_pred CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCC
Q 030931 36 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMK 107 (169)
Q Consensus 36 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~ 107 (169)
.+.+.|+|+|+..... ........+|.+|+|..... .+...+...++.+.+. +.+ .-+|.|+.|..
T Consensus 213 ~yD~VIIDtpp~~~~~-d~~~l~~~ad~vilV~~~~~-~~~~~~~~~~~~l~~~----~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 213 HYDLVIVDTPPMLAVS-DAAVVGRSVGTSLLVARFGL-NTAKEVSLSMQRLEQA----GVNIKGAILNGVIKR 279 (299)
T ss_dssp HCSEEEEECCCTTTCT-HHHHHGGGCSEEEEEEETTT-SCTTHHHHHHHHHHHT----TCCCCCEEEEECCCC
T ss_pred CCCEEEEcCCCCchhH-HHHHHHHHCCEEEEEEcCCC-ChHHHHHHHHHHHHhC----CCCeEEEEEeCCccC
Confidence 3568999999875432 23334567999999998743 2333444434333221 222 44788999864
No 375
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=73.29 E-value=0.27 Score=38.70 Aligned_cols=25 Identities=8% Similarity=-0.170 Sum_probs=18.0
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|+|||||++-+.....|+.|
T Consensus 30 LiGpNGaGKSTLlkiL~Gl~~p~~G 54 (538)
T 3ozx_A 30 VLGKNGVGKTTVLKILAGEIIPNFG 54 (538)
T ss_dssp EECCTTSSHHHHHHHHTTSSCCCTT
T ss_pred EECCCCCcHHHHHHHHhcCCCCCCC
Confidence 5678999999999966444444433
No 376
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=73.26 E-value=0.36 Score=35.08 Aligned_cols=64 Identities=11% Similarity=0.042 Sum_probs=34.1
Q ss_pred EEEEEEEcCCCCCchhhH------------HhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 030931 37 VIFTVWDVGGQEKLRPLW------------RHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQ 104 (169)
Q Consensus 37 ~~~~i~D~~G~~~~~~~~------------~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~ 104 (169)
....+.||+|........ .......+.++++.|.......-. .+..+.+.. + ..+++.||.
T Consensus 185 ~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~~---~~~~~~~~~---~-~t~iivTh~ 257 (304)
T 1rj9_A 185 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLE---QAKKFHEAV---G-LTGVIVTKL 257 (304)
T ss_dssp CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHH---HHHHHHHHH---C-CSEEEEECT
T ss_pred CCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHHH---HHHHHHHHc---C-CcEEEEECC
Confidence 446788999964322111 112335677888999865433222 222221110 2 356778999
Q ss_pred CCC
Q 030931 105 DMK 107 (169)
Q Consensus 105 Dl~ 107 (169)
|-.
T Consensus 258 d~~ 260 (304)
T 1rj9_A 258 DGT 260 (304)
T ss_dssp TSS
T ss_pred ccc
Confidence 853
No 377
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=73.25 E-value=0.29 Score=32.85 Aligned_cols=16 Identities=13% Similarity=-0.166 Sum_probs=13.6
Q ss_pred ccccCCCCCceeeeec
Q 030931 2 LRVKQPYCTSCTLVKF 17 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f 17 (169)
|.+-+||||||+.+.+
T Consensus 30 l~G~~GsGKsTl~~~L 45 (199)
T 3vaa_A 30 LTGYMGAGKTTLGKAF 45 (199)
T ss_dssp EECCTTSCHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHH
Confidence 5678999999999865
No 378
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=73.25 E-value=0.42 Score=34.79 Aligned_cols=17 Identities=6% Similarity=-0.222 Sum_probs=14.0
Q ss_pred ccccCCCCCceeeeece
Q 030931 2 LRVKQPYCTSCTLVKFY 18 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~ 18 (169)
|.+..|+|||||++-+.
T Consensus 131 IvGpsGsGKSTLl~lL~ 147 (305)
T 2v9p_A 131 FIGPPNTGKSMLCNSLI 147 (305)
T ss_dssp EECSSSSSHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHh
Confidence 56789999999999653
No 379
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=73.19 E-value=0.29 Score=32.41 Aligned_cols=17 Identities=6% Similarity=-0.109 Sum_probs=13.6
Q ss_pred cccCCCCCceeeeecee
Q 030931 3 RVKQPYCTSCTLVKFYL 19 (169)
Q Consensus 3 ~~~~~~~Ktsll~~f~~ 19 (169)
.+..|||||||+.++..
T Consensus 10 ~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 10 VGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 45779999999998743
No 380
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=72.78 E-value=0.38 Score=35.30 Aligned_cols=17 Identities=12% Similarity=-0.132 Sum_probs=14.0
Q ss_pred ccccCCCCCceeeeece
Q 030931 2 LRVKQPYCTSCTLVKFY 18 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~ 18 (169)
|.+..|||||||++.+.
T Consensus 97 I~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 97 IAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp EECCTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 45689999999998763
No 381
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=72.36 E-value=0.31 Score=31.82 Aligned_cols=18 Identities=11% Similarity=-0.160 Sum_probs=14.1
Q ss_pred ccccCCCCCceeeeecee
Q 030931 2 LRVKQPYCTSCTLVKFYL 19 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~ 19 (169)
|.+-+||||||+.+.+..
T Consensus 8 l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 8 LNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 345789999999997643
No 382
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=72.33 E-value=0.32 Score=32.19 Aligned_cols=18 Identities=6% Similarity=-0.173 Sum_probs=14.4
Q ss_pred ccccCCCCCceeeeecee
Q 030931 2 LRVKQPYCTSCTLVKFYL 19 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~ 19 (169)
|.+-+||||||+.+.+..
T Consensus 18 l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 18 LTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHH
Confidence 456899999999997643
No 383
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=72.28 E-value=0.38 Score=32.37 Aligned_cols=18 Identities=6% Similarity=-0.236 Sum_probs=14.5
Q ss_pred ccccCCCCCceeeeecee
Q 030931 2 LRVKQPYCTSCTLVKFYL 19 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~ 19 (169)
|.+.+||||||+.+.+..
T Consensus 15 l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 15 FEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp EEESTTSSHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHH
Confidence 456899999999997743
No 384
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=72.20 E-value=0.34 Score=31.75 Aligned_cols=18 Identities=6% Similarity=-0.208 Sum_probs=10.4
Q ss_pred ccccCCCCCceeeeecee
Q 030931 2 LRVKQPYCTSCTLVKFYL 19 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~ 19 (169)
|.+-+||||||+.+.+..
T Consensus 10 l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 10 INGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp EECCC----CHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 446899999999997743
No 385
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=72.05 E-value=0.33 Score=32.98 Aligned_cols=18 Identities=6% Similarity=-0.295 Sum_probs=14.5
Q ss_pred ccccCCCCCceeeeecee
Q 030931 2 LRVKQPYCTSCTLVKFYL 19 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~ 19 (169)
|.+.+||||||+.+.+..
T Consensus 5 l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 5 LLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEESTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 457899999999987633
No 386
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=71.92 E-value=0.33 Score=32.71 Aligned_cols=18 Identities=17% Similarity=-0.104 Sum_probs=14.6
Q ss_pred ccccCCCCCceeeeecee
Q 030931 2 LRVKQPYCTSCTLVKFYL 19 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~ 19 (169)
|.+.+||||||+.+.+..
T Consensus 14 l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 14 LEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp EEESTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 456899999999997743
No 387
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=71.61 E-value=0.34 Score=33.00 Aligned_cols=18 Identities=6% Similarity=-0.237 Sum_probs=14.4
Q ss_pred ccccCCCCCceeeeecee
Q 030931 2 LRVKQPYCTSCTLVKFYL 19 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~ 19 (169)
|.+.+||||||+.+.+..
T Consensus 9 l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 9 LIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 456899999999987643
No 388
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=71.38 E-value=0.3 Score=38.40 Aligned_cols=18 Identities=6% Similarity=-0.221 Sum_probs=14.7
Q ss_pred ccccCCCCCceeeeecee
Q 030931 2 LRVKQPYCTSCTLVKFYL 19 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~ 19 (169)
|++..|+|||||++-+..
T Consensus 52 LvG~NGaGKSTLlk~l~G 69 (538)
T 1yqt_A 52 IVGPNGTGKSTAVKILAG 69 (538)
T ss_dssp EECCTTSSHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 567899999999996533
No 389
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=71.11 E-value=0.16 Score=34.30 Aligned_cols=17 Identities=6% Similarity=-0.103 Sum_probs=13.8
Q ss_pred ccccCCCCCceeeeece
Q 030931 2 LRVKQPYCTSCTLVKFY 18 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~ 18 (169)
+.+.+||||||+++.+.
T Consensus 5 i~G~~GsGKsTl~~~L~ 21 (214)
T 1gtv_A 5 IEGVDGAGKRTLVEKLS 21 (214)
T ss_dssp EEEEEEEEHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHH
Confidence 44689999999999763
No 390
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=71.00 E-value=0.37 Score=36.91 Aligned_cols=25 Identities=16% Similarity=-0.208 Sum_probs=19.3
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|+|||||++.+.....|+.|
T Consensus 162 IvG~sGsGKSTLl~~Iag~~~~~~G 186 (438)
T 2dpy_A 162 LFAGSGVGKSVLLGMMARYTRADVI 186 (438)
T ss_dssp EEECTTSSHHHHHHHHHHHSCCSEE
T ss_pred EECCCCCCHHHHHHHHhcccCCCeE
Confidence 5678999999999977555556555
No 391
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=70.94 E-value=0.44 Score=34.12 Aligned_cols=17 Identities=6% Similarity=-0.154 Sum_probs=14.3
Q ss_pred ccccCCCCCceeeeece
Q 030931 2 LRVKQPYCTSCTLVKFY 18 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~ 18 (169)
|.+.+|+|||||+..+.
T Consensus 40 i~G~~G~GKTTl~~~ia 56 (296)
T 1cr0_A 40 VTSGSGMGKSTFVRQQA 56 (296)
T ss_dssp EEESTTSSHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHH
Confidence 56789999999999763
No 392
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=70.86 E-value=0.36 Score=31.71 Aligned_cols=17 Identities=6% Similarity=-0.185 Sum_probs=14.0
Q ss_pred ccccCCCCCceeeeece
Q 030931 2 LRVKQPYCTSCTLVKFY 18 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~ 18 (169)
|.+-+||||||+.+.+.
T Consensus 16 i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 16 LTGTPGVGKTTLGKELA 32 (180)
T ss_dssp EECSTTSSHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHH
Confidence 45689999999999764
No 393
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=70.80 E-value=0.44 Score=32.74 Aligned_cols=18 Identities=0% Similarity=-0.239 Sum_probs=14.7
Q ss_pred ccccCCCCCceeeeecee
Q 030931 2 LRVKQPYCTSCTLVKFYL 19 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~ 19 (169)
|.+.+|+|||+|+..+..
T Consensus 29 i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 29 MFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHHH
Confidence 566899999999997743
No 394
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=70.75 E-value=0.34 Score=38.75 Aligned_cols=23 Identities=0% Similarity=-0.213 Sum_probs=16.6
Q ss_pred ccccCCCCCceeeeeceeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLL 24 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t 24 (169)
|++..|+|||||++-+.....|+
T Consensus 122 LiG~NGsGKSTLlkiL~Gll~p~ 144 (607)
T 3bk7_A 122 IVGPNGTGKTTAVKILAGQLIPN 144 (607)
T ss_dssp EECCTTSSHHHHHHHHTTSSCCC
T ss_pred EECCCCChHHHHHHHHhCCCCCC
Confidence 56789999999999654333333
No 395
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=70.70 E-value=0.32 Score=34.11 Aligned_cols=16 Identities=6% Similarity=-0.272 Sum_probs=13.5
Q ss_pred ccccCCCCCceeeeec
Q 030931 2 LRVKQPYCTSCTLVKF 17 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f 17 (169)
|.+-+||||||+.+.+
T Consensus 37 l~G~~GsGKSTla~~L 52 (253)
T 2p5t_B 37 LGGQSGAGKTTIHRIK 52 (253)
T ss_dssp EESCGGGTTHHHHHHH
T ss_pred EECCCCCCHHHHHHHH
Confidence 5568999999999865
No 396
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=70.66 E-value=0.53 Score=34.49 Aligned_cols=18 Identities=6% Similarity=-0.239 Sum_probs=14.7
Q ss_pred ccccCCCCCceeeeecee
Q 030931 2 LRVKQPYCTSCTLVKFYL 19 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~ 19 (169)
|.+.+|+|||||++-+..
T Consensus 56 l~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 56 LAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp EESSTTSSHHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHHH
Confidence 457899999999997643
No 397
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=70.58 E-value=0.41 Score=34.90 Aligned_cols=17 Identities=12% Similarity=-0.130 Sum_probs=13.7
Q ss_pred ccccCCCCCceeeeece
Q 030931 2 LRVKQPYCTSCTLVKFY 18 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~ 18 (169)
|.+--|||||||++.+.
T Consensus 9 i~G~~GaGKTTll~~l~ 25 (318)
T 1nij_A 9 LTGFLGAGKTTLLRHIL 25 (318)
T ss_dssp EEESSSSSCHHHHHHHH
T ss_pred EEecCCCCHHHHHHHHH
Confidence 45678999999999763
No 398
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=70.47 E-value=0.38 Score=32.82 Aligned_cols=17 Identities=6% Similarity=-0.216 Sum_probs=14.1
Q ss_pred ccccCCCCCceeeeece
Q 030931 2 LRVKQPYCTSCTLVKFY 18 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~ 18 (169)
|.+.+|+|||+|++.+.
T Consensus 57 l~G~~G~GKT~la~~l~ 73 (242)
T 3bos_A 57 LWGPVKSGRTHLIHAAC 73 (242)
T ss_dssp EECSTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 45689999999999763
No 399
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=70.46 E-value=0.37 Score=33.03 Aligned_cols=18 Identities=0% Similarity=-0.437 Sum_probs=14.5
Q ss_pred ccccCCCCCceeeeecee
Q 030931 2 LRVKQPYCTSCTLVKFYL 19 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~ 19 (169)
|.+.+||||||+.+.+..
T Consensus 5 l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 5 IFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EECCTTSCHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 456899999999987643
No 400
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=70.31 E-value=0.53 Score=32.78 Aligned_cols=17 Identities=6% Similarity=-0.261 Sum_probs=14.3
Q ss_pred ccccCCCCCceeeeece
Q 030931 2 LRVKQPYCTSCTLVKFY 18 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~ 18 (169)
|.+.+|+|||+|++.+.
T Consensus 54 l~G~~G~GKTtl~~~i~ 70 (254)
T 1ixz_A 54 LVGPPGVGKTHLARAVA 70 (254)
T ss_dssp EECCTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 56789999999999764
No 401
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=70.30 E-value=0.47 Score=34.04 Aligned_cols=17 Identities=6% Similarity=-0.029 Sum_probs=13.9
Q ss_pred ccccCCCCCceeeeece
Q 030931 2 LRVKQPYCTSCTLVKFY 18 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~ 18 (169)
|.+-+||||||+..++.
T Consensus 38 l~G~sGsGKSTla~~L~ 54 (287)
T 1gvn_B 38 LGGQPGSGKTSLRSAIF 54 (287)
T ss_dssp EECCTTSCTHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 45689999999998763
No 402
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=70.26 E-value=3.1 Score=30.89 Aligned_cols=18 Identities=17% Similarity=-0.038 Sum_probs=14.4
Q ss_pred ccccCCCCCceeeeecee
Q 030931 2 LRVKQPYCTSCTLVKFYL 19 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~ 19 (169)
+.+..|||||||++.+..
T Consensus 128 I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 128 VTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EECSTTSCHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHh
Confidence 456899999999996633
No 403
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=70.16 E-value=0.25 Score=33.74 Aligned_cols=20 Identities=0% Similarity=-0.308 Sum_probs=15.6
Q ss_pred ccccCCCCCceeeeeceeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLF 21 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~ 21 (169)
|++.|||||+|...++...+
T Consensus 5 l~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 5 FLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EECSTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 56799999999988764433
No 404
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=70.12 E-value=0.38 Score=31.89 Aligned_cols=17 Identities=6% Similarity=-0.205 Sum_probs=13.9
Q ss_pred ccccCCCCCceeeeece
Q 030931 2 LRVKQPYCTSCTLVKFY 18 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~ 18 (169)
|.+.+||||||+.+.+.
T Consensus 14 l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 14 VVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp EEECTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 45689999999998764
No 405
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=70.09 E-value=0.45 Score=31.34 Aligned_cols=18 Identities=0% Similarity=-0.245 Sum_probs=14.4
Q ss_pred ccccCCCCCceeeeecee
Q 030931 2 LRVKQPYCTSCTLVKFYL 19 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~ 19 (169)
|.+.+||||||+.+.+..
T Consensus 11 l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 11 VLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEESTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 456899999999987643
No 406
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=69.85 E-value=0.35 Score=38.71 Aligned_cols=25 Identities=12% Similarity=-0.238 Sum_probs=17.9
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|+|||||++-+.....|+.|
T Consensus 108 LvGpNGaGKSTLLkiL~Gll~P~~G 132 (608)
T 3j16_B 108 LVGTNGIGKSTALKILAGKQKPNLG 132 (608)
T ss_dssp EECCTTSSHHHHHHHHHTSSCCCTT
T ss_pred EECCCCChHHHHHHHHhcCCCCCCc
Confidence 5678999999999966444444443
No 407
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=69.84 E-value=1.2 Score=31.64 Aligned_cols=34 Identities=15% Similarity=0.202 Sum_probs=26.8
Q ss_pred CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931 36 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL 71 (169)
Q Consensus 36 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~ 71 (169)
.+.+.|+|+|+.. .......+..+|.+|++...+
T Consensus 103 ~yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~ 136 (286)
T 2xj4_A 103 ECDFILIDTPGGD--SAITRMAHGRADLVVTPMNDS 136 (286)
T ss_dssp HCSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESS
T ss_pred cCCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCC
Confidence 4678999999875 444566788999999999874
No 408
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=69.78 E-value=0.39 Score=31.91 Aligned_cols=18 Identities=6% Similarity=-0.215 Sum_probs=14.3
Q ss_pred ccccCCCCCceeeeecee
Q 030931 2 LRVKQPYCTSCTLVKFYL 19 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~ 19 (169)
|.+.+||||||+.+.+..
T Consensus 17 l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 17 IIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp EEECTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 456899999999987643
No 409
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=69.74 E-value=0.48 Score=34.38 Aligned_cols=16 Identities=13% Similarity=-0.051 Sum_probs=13.4
Q ss_pred ccccCCCCCceeeeec
Q 030931 2 LRVKQPYCTSCTLVKF 17 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f 17 (169)
|++-.|+||||++..+
T Consensus 105 lvG~nGsGKTTll~~L 120 (302)
T 3b9q_A 105 IVGVNGGGKTTSLGKL 120 (302)
T ss_dssp EECCTTSCHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHH
Confidence 5678999999999943
No 410
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=69.71 E-value=0.57 Score=35.01 Aligned_cols=22 Identities=9% Similarity=-0.106 Sum_probs=15.9
Q ss_pred ccccCCCCCceeeeeceeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLL 23 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~ 23 (169)
|.+..|||||||++.+...+.|
T Consensus 141 ivG~~GsGKTTll~~l~~~~~~ 162 (372)
T 2ewv_A 141 VTGPTGSGKSTTIASMIDYINQ 162 (372)
T ss_dssp EECSSSSSHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHhhcCc
Confidence 4568999999999976443333
No 411
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=69.70 E-value=0.46 Score=31.16 Aligned_cols=19 Identities=5% Similarity=-0.181 Sum_probs=15.2
Q ss_pred ccccCCCCCceeeeeceee
Q 030931 2 LRVKQPYCTSCTLVKFYLL 20 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~ 20 (169)
|.+-.||||||+.+.+...
T Consensus 10 l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 10 LTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp EECCTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 4568999999999977543
No 412
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=69.67 E-value=13 Score=28.38 Aligned_cols=66 Identities=17% Similarity=0.162 Sum_probs=36.9
Q ss_pred CCEEEEEEEcCCCCCchh-hHH-----hhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030931 35 KNVIFTVWDVGGQEKLRP-LWR-----HYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 107 (169)
Q Consensus 35 ~~~~~~i~D~~G~~~~~~-~~~-----~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 107 (169)
..+.+.|.||||...... ... ...-.++.+++|+|..... +.......+... -...-+|.||.|..
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq---~av~~a~~f~~~----l~i~GVIlTKlD~~ 250 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ---EALSVARAFDEK----VGVTGLVLTKLDGD 250 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHH----TCCCEEEEESGGGC
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchH---HHHHHHHHHHhc----CCceEEEEeCcCCc
Confidence 456789999999754321 111 1122589999999985432 222222222111 11356688999864
No 413
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=69.53 E-value=0.4 Score=32.12 Aligned_cols=18 Identities=17% Similarity=-0.103 Sum_probs=14.5
Q ss_pred ccccCCCCCceeeeecee
Q 030931 2 LRVKQPYCTSCTLVKFYL 19 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~ 19 (169)
|.+.+||||||+.+.+..
T Consensus 25 l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 25 LLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 456899999999987644
No 414
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=69.50 E-value=0.62 Score=29.88 Aligned_cols=16 Identities=13% Similarity=-0.068 Sum_probs=13.2
Q ss_pred ccccCCCCCceeeeec
Q 030931 2 LRVKQPYCTSCTLVKF 17 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f 17 (169)
|.+..|+|||+|+..+
T Consensus 28 I~G~NGsGKStil~Ai 43 (149)
T 1f2t_A 28 IIGQNGSGKSSLLDAI 43 (149)
T ss_dssp EECCTTSSHHHHHHHH
T ss_pred EECCCCCCHHHHHHHH
Confidence 4568899999999853
No 415
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=69.49 E-value=0.47 Score=31.39 Aligned_cols=19 Identities=0% Similarity=-0.258 Sum_probs=15.3
Q ss_pred ccccCCCCCceeeeeceee
Q 030931 2 LRVKQPYCTSCTLVKFYLL 20 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~ 20 (169)
|.+.+||||||+.+.+...
T Consensus 15 l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 15 ITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp EECSTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHh
Confidence 4568999999999877554
No 416
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=69.43 E-value=0.41 Score=33.35 Aligned_cols=18 Identities=0% Similarity=-0.206 Sum_probs=14.9
Q ss_pred ccccCCCCCceeeeecee
Q 030931 2 LRVKQPYCTSCTLVKFYL 19 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~ 19 (169)
|.+.+||||||+.+++..
T Consensus 34 l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 34 FLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 567999999999997743
No 417
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=69.42 E-value=0.28 Score=32.01 Aligned_cols=17 Identities=6% Similarity=-0.111 Sum_probs=13.8
Q ss_pred ccccCCCCCceeeeece
Q 030931 2 LRVKQPYCTSCTLVKFY 18 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~ 18 (169)
|.+.+|+|||+|++.+.
T Consensus 48 l~G~~G~GKT~la~~~~ 64 (187)
T 2p65_A 48 LLGDPGVGKTAIVEGLA 64 (187)
T ss_dssp EESCGGGCHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 45688999999998763
No 418
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=69.24 E-value=0.59 Score=35.58 Aligned_cols=17 Identities=18% Similarity=-0.119 Sum_probs=14.0
Q ss_pred ccccCCCCCceeeeece
Q 030931 2 LRVKQPYCTSCTLVKFY 18 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~ 18 (169)
|.+..|||||||++.+.
T Consensus 172 I~GpnGSGKTTlL~all 188 (418)
T 1p9r_A 172 VTGPTGSGKSTTLYAGL 188 (418)
T ss_dssp EECSTTSCHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 45689999999999653
No 419
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=69.03 E-value=0.42 Score=31.48 Aligned_cols=17 Identities=6% Similarity=-0.252 Sum_probs=13.9
Q ss_pred ccccCCCCCceeeeece
Q 030931 2 LRVKQPYCTSCTLVKFY 18 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~ 18 (169)
|.+-+||||||+.+.+.
T Consensus 10 l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 10 LIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp EECSTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 45689999999999763
No 420
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=68.99 E-value=0.42 Score=32.01 Aligned_cols=17 Identities=6% Similarity=-0.195 Sum_probs=13.8
Q ss_pred ccccCCCCCceeeeece
Q 030931 2 LRVKQPYCTSCTLVKFY 18 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~ 18 (169)
|.+.+||||||+.+.+.
T Consensus 20 l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 20 VLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp EECSTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 45689999999998663
No 421
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=68.98 E-value=3.1 Score=28.58 Aligned_cols=14 Identities=21% Similarity=0.316 Sum_probs=12.1
Q ss_pred CCeEEEEEeCCCCC
Q 030931 94 NSVILVFANKQDMK 107 (169)
Q Consensus 94 ~~piivv~nK~Dl~ 107 (169)
++|+++.|-+.|=.
T Consensus 128 ~~~Vi~~Gl~~DF~ 141 (214)
T 2j9r_A 128 GYRVIVAGLDQDFR 141 (214)
T ss_dssp TCEEEEEECSBCTT
T ss_pred CCEEEEEecccccc
Confidence 78999999999953
No 422
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=68.93 E-value=2.1 Score=30.83 Aligned_cols=19 Identities=5% Similarity=-0.160 Sum_probs=14.4
Q ss_pred cccc-CCCCCceeeeeceee
Q 030931 2 LRVK-QPYCTSCTLVKFYLL 20 (169)
Q Consensus 2 ~~~~-~~~~Ktsll~~f~~~ 20 (169)
|+.. +|+|||++++.+...
T Consensus 52 L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 52 LHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp EECSSTTSSHHHHHHHHHHH
T ss_pred EeeCcCCCCHHHHHHHHHHH
Confidence 3445 999999999987443
No 423
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=68.78 E-value=0.61 Score=35.16 Aligned_cols=16 Identities=25% Similarity=0.123 Sum_probs=13.6
Q ss_pred ccccCCCCCceeeeec
Q 030931 2 LRVKQPYCTSCTLVKF 17 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f 17 (169)
|++..|+|||||++-+
T Consensus 52 llGpsGsGKSTLLr~i 67 (390)
T 3gd7_A 52 LLGRTGSGKSTLLSAF 67 (390)
T ss_dssp EEESTTSSHHHHHHHH
T ss_pred EECCCCChHHHHHHHH
Confidence 5678999999999854
No 424
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=68.72 E-value=0.42 Score=31.00 Aligned_cols=17 Identities=0% Similarity=-0.203 Sum_probs=13.6
Q ss_pred ccccCCCCCceeeeece
Q 030931 2 LRVKQPYCTSCTLVKFY 18 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~ 18 (169)
|.+-+||||||+.+.+.
T Consensus 7 l~G~~GsGKsT~a~~La 23 (173)
T 1e6c_A 7 MVGARGCGMTTVGRELA 23 (173)
T ss_dssp EESCTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 34589999999998663
No 425
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=68.69 E-value=0.41 Score=30.89 Aligned_cols=18 Identities=11% Similarity=-0.382 Sum_probs=14.3
Q ss_pred ccccCCCCCceeeeecee
Q 030931 2 LRVKQPYCTSCTLVKFYL 19 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~ 19 (169)
|.+.+||||||+.+.+..
T Consensus 5 l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 5 LIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EESCTTSCHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 446899999999987644
No 426
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=68.65 E-value=0.42 Score=32.08 Aligned_cols=16 Identities=19% Similarity=0.032 Sum_probs=13.2
Q ss_pred ccccCCCCCceeeeec
Q 030931 2 LRVKQPYCTSCTLVKF 17 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f 17 (169)
|.+..|+|||||++++
T Consensus 6 i~GPSG~GK~Tl~~~L 21 (186)
T 1ex7_A 6 ISGPSGTGKSTLLKKL 21 (186)
T ss_dssp EECCTTSSHHHHHHHH
T ss_pred EECCCCCCHHHHHHHH
Confidence 4567899999999965
No 427
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=68.54 E-value=0.44 Score=31.90 Aligned_cols=16 Identities=13% Similarity=-0.026 Sum_probs=13.6
Q ss_pred ccccCCCCCceeeeec
Q 030931 2 LRVKQPYCTSCTLVKF 17 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f 17 (169)
|.+.+|+|||+|+..+
T Consensus 59 l~G~~GtGKT~la~~i 74 (202)
T 2w58_A 59 LHGSFGVGKTYLLAAI 74 (202)
T ss_dssp EECSTTSSHHHHHHHH
T ss_pred EECCCCCCHHHHHHHH
Confidence 4578999999999865
No 428
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=68.36 E-value=0.45 Score=32.27 Aligned_cols=16 Identities=0% Similarity=-0.139 Sum_probs=13.6
Q ss_pred ccccCCCCCceeeeec
Q 030931 2 LRVKQPYCTSCTLVKF 17 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f 17 (169)
|.+.+|+|||+|++.+
T Consensus 50 l~G~~G~GKT~l~~~~ 65 (250)
T 1njg_A 50 FSGTRGVGKTSIARLL 65 (250)
T ss_dssp EECSTTSCHHHHHHHH
T ss_pred EECCCCCCHHHHHHHH
Confidence 4568999999999976
No 429
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=68.33 E-value=0.54 Score=33.89 Aligned_cols=17 Identities=24% Similarity=0.206 Sum_probs=13.7
Q ss_pred ccccCCCCCceeeeece
Q 030931 2 LRVKQPYCTSCTLVKFY 18 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~ 18 (169)
|.+.+|||||||.+.+.
T Consensus 36 I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 36 FSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp EECCTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 34689999999998763
No 430
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=68.29 E-value=0.61 Score=31.26 Aligned_cols=19 Identities=5% Similarity=-0.144 Sum_probs=14.8
Q ss_pred ccccCCCCCceeeeeceee
Q 030931 2 LRVKQPYCTSCTLVKFYLL 20 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~ 20 (169)
|.+-.|||||||.+.+...
T Consensus 30 l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 30 VTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp EECSTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 4568999999999876443
No 431
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=68.21 E-value=0.46 Score=33.47 Aligned_cols=18 Identities=11% Similarity=-0.223 Sum_probs=14.5
Q ss_pred ccccCCCCCceeeeecee
Q 030931 2 LRVKQPYCTSCTLVKFYL 19 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~ 19 (169)
|.|-+||||||+.+.+..
T Consensus 9 l~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 9 LTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHH
Confidence 456899999999997643
No 432
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=68.16 E-value=0.64 Score=34.60 Aligned_cols=15 Identities=7% Similarity=-0.130 Sum_probs=13.0
Q ss_pred ccccCCCCCceeeee
Q 030931 2 LRVKQPYCTSCTLVK 16 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~ 16 (169)
|.+..|+|||||++.
T Consensus 28 i~G~NGaGKTTll~a 42 (365)
T 3qf7_A 28 VEGPNGAGKSSLFEA 42 (365)
T ss_dssp EECCTTSSHHHHHHH
T ss_pred EECCCCCCHHHHHHH
Confidence 567899999999984
No 433
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=68.13 E-value=0.46 Score=33.31 Aligned_cols=17 Identities=0% Similarity=-0.253 Sum_probs=14.0
Q ss_pred ccccCCCCCceeeeece
Q 030931 2 LRVKQPYCTSCTLVKFY 18 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~ 18 (169)
|.+..||||||+++.+.
T Consensus 32 I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 32 VDGPSGAGKGTLCKALA 48 (252)
T ss_dssp EECCTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 45689999999998764
No 434
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=68.04 E-value=0.63 Score=33.13 Aligned_cols=19 Identities=5% Similarity=-0.298 Sum_probs=15.3
Q ss_pred ccccCCCCCceeeeeceee
Q 030931 2 LRVKQPYCTSCTLVKFYLL 20 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~ 20 (169)
|.+.+|+|||+|++.+...
T Consensus 49 L~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 49 LAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EESSTTSCHHHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHHHH
Confidence 5678999999999976443
No 435
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=67.91 E-value=0.55 Score=31.62 Aligned_cols=19 Identities=11% Similarity=-0.256 Sum_probs=15.3
Q ss_pred ccccCCCCCceeeeeceee
Q 030931 2 LRVKQPYCTSCTLVKFYLL 20 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~ 20 (169)
|-+..||||||+.+.+...
T Consensus 17 ltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 17 VTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EECSTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHh
Confidence 4468999999999987554
No 436
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=67.65 E-value=0.58 Score=36.10 Aligned_cols=16 Identities=0% Similarity=-0.186 Sum_probs=13.9
Q ss_pred ccccCCCCCceeeeec
Q 030931 2 LRVKQPYCTSCTLVKF 17 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f 17 (169)
|++..|||||||++-+
T Consensus 143 IvGpnGsGKSTLlr~L 158 (460)
T 2npi_A 143 IVGGSQTGKTSLSRTL 158 (460)
T ss_dssp EEESTTSSHHHHHHHH
T ss_pred EECCCCCCHHHHHHHH
Confidence 6778999999999955
No 437
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=67.51 E-value=0.53 Score=37.08 Aligned_cols=25 Identities=0% Similarity=-0.370 Sum_probs=18.7
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|+|||||++-+.....|+.|
T Consensus 299 i~G~nGsGKSTLl~~l~Gl~~p~~G 323 (538)
T 3ozx_A 299 ILGPNGIGKTTFARILVGEITADEG 323 (538)
T ss_dssp EECCTTSSHHHHHHHHTTSSCCSBC
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCc
Confidence 5678999999999976555555554
No 438
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=67.44 E-value=0.48 Score=31.71 Aligned_cols=17 Identities=6% Similarity=-0.035 Sum_probs=14.0
Q ss_pred ccccCCCCCceeeeece
Q 030931 2 LRVKQPYCTSCTLVKFY 18 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~ 18 (169)
|.+.+|+|||+|++.+.
T Consensus 43 l~G~~G~GKT~l~~~l~ 59 (226)
T 2chg_A 43 FSGPPGTGKTATAIALA 59 (226)
T ss_dssp EECSTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 45689999999999763
No 439
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=67.38 E-value=0.57 Score=33.24 Aligned_cols=16 Identities=13% Similarity=-0.043 Sum_probs=13.7
Q ss_pred ccccCCCCCceeeeec
Q 030931 2 LRVKQPYCTSCTLVKF 17 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f 17 (169)
|.+.+|+|||||+..+
T Consensus 35 i~G~~GsGKTtl~~~l 50 (279)
T 1nlf_A 35 LVSPGGAGKSMLALQL 50 (279)
T ss_dssp EEESTTSSHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHH
Confidence 4568999999999976
No 440
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=67.38 E-value=0.48 Score=32.33 Aligned_cols=24 Identities=8% Similarity=-0.010 Sum_probs=17.1
Q ss_pred EEEeeeccCCCHHHHHHHHHHHHHhh
Q 030931 131 IQGTCALKGDGLYEGLDWLASTLKEM 156 (169)
Q Consensus 131 ~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (169)
++.+.+ ...++++++.+...+...
T Consensus 188 ~~~Id~--~~~~~ev~~~I~~~l~~~ 211 (222)
T 1zak_A 188 IVKVQG--DATVDAVFAKIDELLGSI 211 (222)
T ss_dssp EEEEEC--SSCHHHHHHHHHHHHHHH
T ss_pred EEEEEC--CCCHHHHHHHHHHHHHhh
Confidence 556666 356899999888877653
No 441
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=67.13 E-value=0.49 Score=32.53 Aligned_cols=16 Identities=13% Similarity=-0.062 Sum_probs=13.3
Q ss_pred ccccCCCCCceeeeec
Q 030931 2 LRVKQPYCTSCTLVKF 17 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f 17 (169)
|.+.+|+|||+|+.++
T Consensus 28 i~G~~GsGKTtl~~~~ 43 (247)
T 2dr3_A 28 LSGGPGTGKTIFSQQF 43 (247)
T ss_dssp EEECTTSSHHHHHHHH
T ss_pred EECCCCCCHHHHHHHH
Confidence 4568999999998765
No 442
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=66.93 E-value=0.5 Score=32.58 Aligned_cols=18 Identities=11% Similarity=-0.186 Sum_probs=14.4
Q ss_pred ccccCCCCCceeeeecee
Q 030931 2 LRVKQPYCTSCTLVKFYL 19 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~ 19 (169)
|.+.+||||||+.+.+..
T Consensus 21 l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 21 LLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 456899999999987643
No 443
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=66.90 E-value=0.49 Score=32.22 Aligned_cols=18 Identities=6% Similarity=-0.324 Sum_probs=14.5
Q ss_pred ccccCCCCCceeeeecee
Q 030931 2 LRVKQPYCTSCTLVKFYL 19 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~ 19 (169)
|.+.+||||||+.+.+..
T Consensus 10 l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 10 LIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp EEECTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 456899999999987644
No 444
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=66.52 E-value=0.61 Score=32.79 Aligned_cols=20 Identities=10% Similarity=-0.105 Sum_probs=15.5
Q ss_pred ccccCCCCCceeeeeceeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLF 21 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~ 21 (169)
+-+.+||||||+.+.+.+..
T Consensus 29 ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 29 IEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp EECSTTSSHHHHHTTTGGGC
T ss_pred EECCCCCCHHHHHHHHHHhc
Confidence 34689999999999875543
No 445
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=66.13 E-value=0.52 Score=31.90 Aligned_cols=25 Identities=16% Similarity=-0.064 Sum_probs=18.0
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|.+-+||||||+.+.+.....|..|
T Consensus 30 ~~G~~GsGKsT~~~~l~~~l~~~~g 54 (211)
T 1m7g_A 30 LTGLSASGKSTLAVELEHQLVRDRR 54 (211)
T ss_dssp EECSTTSSHHHHHHHHHHHHHHHHC
T ss_pred EECCCCCCHHHHHHHHHHHhccccC
Confidence 4568999999999987555443444
No 446
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=65.92 E-value=0.55 Score=37.55 Aligned_cols=25 Identities=0% Similarity=-0.331 Sum_probs=17.8
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|+|||||++-+.....|+.|
T Consensus 387 i~G~NGsGKSTLlk~l~Gl~~p~~G 411 (607)
T 3bk7_A 387 IVGPNGIGKTTFVKMLAGVEEPTEG 411 (607)
T ss_dssp EECCTTSSHHHHHHHHHTSSCCSBS
T ss_pred EECCCCCCHHHHHHHHhcCCCCCce
Confidence 5678999999999966444444433
No 447
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=65.90 E-value=0.36 Score=37.48 Aligned_cols=16 Identities=25% Similarity=0.156 Sum_probs=13.4
Q ss_pred ccccCCCCCceeeeec
Q 030931 2 LRVKQPYCTSCTLVKF 17 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f 17 (169)
|++..|+|||||++-+
T Consensus 34 liG~nGsGKSTLl~~l 49 (483)
T 3euj_A 34 LSGGNGAGKSTTMAGF 49 (483)
T ss_dssp EECCTTSSHHHHHHHH
T ss_pred EECCCCCcHHHHHHHH
Confidence 5678999999999843
No 448
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=65.84 E-value=0.53 Score=32.56 Aligned_cols=21 Identities=5% Similarity=0.085 Sum_probs=16.4
Q ss_pred ccccCCCCCceeeeeceeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFL 22 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~ 22 (169)
+.+.+||||||+++++.....
T Consensus 31 i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 31 FEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp EECCTTSCHHHHHHHHHHHHT
T ss_pred EEcCCCCCHHHHHHHHHHHHh
Confidence 456899999999998755443
No 449
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=65.71 E-value=0.57 Score=36.86 Aligned_cols=25 Identities=0% Similarity=-0.331 Sum_probs=17.7
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|+|||||++-+.....|+.|
T Consensus 317 i~G~NGsGKSTLlk~l~Gl~~p~~G 341 (538)
T 1yqt_A 317 IVGPNGIGKTTFVKMLAGVEEPTEG 341 (538)
T ss_dssp EECCTTSSHHHHHHHHHTSSCCSBC
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCe
Confidence 5678999999999966444444433
No 450
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=65.65 E-value=0.55 Score=32.97 Aligned_cols=16 Identities=0% Similarity=-0.158 Sum_probs=13.4
Q ss_pred ccccCCCCCceeeeec
Q 030931 2 LRVKQPYCTSCTLVKF 17 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f 17 (169)
|.+-+|||||||..++
T Consensus 6 I~G~~GSGKSTla~~L 21 (253)
T 2ze6_A 6 IYGPTCSGKTDMAIQI 21 (253)
T ss_dssp EECCTTSSHHHHHHHH
T ss_pred EECCCCcCHHHHHHHH
Confidence 4568999999999876
No 451
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=65.62 E-value=0.36 Score=33.30 Aligned_cols=19 Identities=5% Similarity=-0.233 Sum_probs=15.2
Q ss_pred ccccCCCCCceeeeeceee
Q 030931 2 LRVKQPYCTSCTLVKFYLL 20 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~ 20 (169)
|++.+||||+|...++...
T Consensus 34 llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 34 VLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp EECCTTCCHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 5789999999988876443
No 452
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=65.57 E-value=0.67 Score=36.14 Aligned_cols=63 Identities=10% Similarity=0.119 Sum_probs=33.8
Q ss_pred CEEEEEEEcCCCCCchhhHH-------hhcc-----CCCEEEEEEECCCh-hhHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 030931 36 NVIFTVWDVGGQEKLRPLWR-------HYFN-----NTDGLIYVVDSLDR-ERIGKAKQEFQAIIKDPFMLNSVILVFAN 102 (169)
Q Consensus 36 ~~~~~i~D~~G~~~~~~~~~-------~~~~-----~~~~ii~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~piivv~n 102 (169)
++.+.+.||+|......... ...+ ..+-+++|.|.+.. +.+.. ...+.+.. + .-.+++|
T Consensus 375 ~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~----ak~f~~~~---~-itgvIlT 446 (503)
T 2yhs_A 375 NIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQ----AKLFHEAV---G-LTGITLT 446 (503)
T ss_dssp TCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHH----HHHHHHHT---C-CSEEEEE
T ss_pred CCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHH----HHHHHhhc---C-CCEEEEE
Confidence 45678899999754332111 1111 25678899997543 22322 22221111 2 2346899
Q ss_pred CCCC
Q 030931 103 KQDM 106 (169)
Q Consensus 103 K~Dl 106 (169)
|.|-
T Consensus 447 KLD~ 450 (503)
T 2yhs_A 447 KLDG 450 (503)
T ss_dssp CGGG
T ss_pred cCCC
Confidence 9985
No 453
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=65.40 E-value=0.77 Score=32.50 Aligned_cols=17 Identities=6% Similarity=-0.261 Sum_probs=14.3
Q ss_pred ccccCCCCCceeeeece
Q 030931 2 LRVKQPYCTSCTLVKFY 18 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~ 18 (169)
|.+.+|+|||+|++.+.
T Consensus 78 l~Gp~GtGKTtl~~~i~ 94 (278)
T 1iy2_A 78 LVGPPGVGKTHLARAVA 94 (278)
T ss_dssp EECCTTSSHHHHHHHHH
T ss_pred EECCCcChHHHHHHHHH
Confidence 56789999999999764
No 454
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=65.23 E-value=0.65 Score=31.50 Aligned_cols=18 Identities=17% Similarity=-0.167 Sum_probs=14.3
Q ss_pred ccccCCCCCceeeeecee
Q 030931 2 LRVKQPYCTSCTLVKFYL 19 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~ 19 (169)
|.+..||||||+.+.+..
T Consensus 9 i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 9 LTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EECCTTSCHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 446899999999987743
No 455
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=64.89 E-value=8.2 Score=26.59 Aligned_cols=25 Identities=8% Similarity=0.058 Sum_probs=17.3
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030931 79 AKQEFQAIIKDPFMLNSVILVFANKQDMK 107 (169)
Q Consensus 79 ~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 107 (169)
+...+..+.+ .++|+++.|-..|=.
T Consensus 117 ~v~~l~~la~----~gi~Vi~~GLd~DF~ 141 (219)
T 3e2i_A 117 IVSIVEKLSA----DGHRVIVAGLDMDFR 141 (219)
T ss_dssp HHHHHHHHHH----TTCEEEEEEESBCTT
T ss_pred HHHHHHHHHH----CCCEEEEeecccccc
Confidence 3444555542 489999999999954
No 456
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=64.56 E-value=0.9 Score=29.81 Aligned_cols=17 Identities=12% Similarity=-0.228 Sum_probs=13.7
Q ss_pred ccccCCCCCceeeeece
Q 030931 2 LRVKQPYCTSCTLVKFY 18 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~ 18 (169)
|.+.+||||||+.+.+.
T Consensus 7 l~G~~GsGKsT~a~~La 23 (184)
T 2iyv_A 7 LVGLPGSGKSTIGRRLA 23 (184)
T ss_dssp EECSTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 45689999999988653
No 457
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=64.08 E-value=0.73 Score=34.34 Aligned_cols=16 Identities=13% Similarity=-0.051 Sum_probs=13.4
Q ss_pred ccccCCCCCceeeeec
Q 030931 2 LRVKQPYCTSCTLVKF 17 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f 17 (169)
|.+-.|+||||++..+
T Consensus 162 lvG~nGsGKTTll~~L 177 (359)
T 2og2_A 162 IVGVNGGGKTTSLGKL 177 (359)
T ss_dssp EECCTTSCHHHHHHHH
T ss_pred EEcCCCChHHHHHHHH
Confidence 5678999999999943
No 458
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=64.07 E-value=0.74 Score=34.07 Aligned_cols=17 Identities=0% Similarity=-0.330 Sum_probs=14.3
Q ss_pred ccccCCCCCceeeeece
Q 030931 2 LRVKQPYCTSCTLVKFY 18 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~ 18 (169)
|.+.+|+|||+|++.+.
T Consensus 136 I~G~~GsGKTTL~~~l~ 152 (349)
T 1pzn_A 136 VFGEFGSGKTQLAHTLA 152 (349)
T ss_dssp EEESTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 45789999999999773
No 459
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=63.84 E-value=0.59 Score=31.25 Aligned_cols=18 Identities=6% Similarity=-0.267 Sum_probs=14.9
Q ss_pred ccccCCCCCceeeeecee
Q 030931 2 LRVKQPYCTSCTLVKFYL 19 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~ 19 (169)
+.+..+||||++..++..
T Consensus 4 V~Gg~~SGKS~~A~~la~ 21 (180)
T 1c9k_A 4 VTGGARSGKSRHAEALIG 21 (180)
T ss_dssp EEECTTSSHHHHHHHHHC
T ss_pred EECCCCCcHHHHHHHHHh
Confidence 567999999999988743
No 460
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=63.22 E-value=0.97 Score=29.44 Aligned_cols=17 Identities=6% Similarity=-0.326 Sum_probs=13.8
Q ss_pred ccccCCCCCceeeeece
Q 030931 2 LRVKQPYCTSCTLVKFY 18 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~ 18 (169)
|.+-+||||||+.+.+.
T Consensus 9 i~G~~GsGKsTla~~La 25 (175)
T 1via_A 9 FIGFMGSGKSTLARALA 25 (175)
T ss_dssp EECCTTSCHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHH
Confidence 45689999999998653
No 461
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=63.20 E-value=0.74 Score=29.77 Aligned_cols=17 Identities=12% Similarity=-0.269 Sum_probs=13.8
Q ss_pred ccccCCCCCceeeeece
Q 030931 2 LRVKQPYCTSCTLVKFY 18 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~ 18 (169)
|.+-+||||||+.+.+.
T Consensus 12 l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 12 LIGFMGSGKSSLAQELG 28 (168)
T ss_dssp EESCTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 45689999999998663
No 462
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=63.00 E-value=0.68 Score=33.59 Aligned_cols=17 Identities=6% Similarity=-0.275 Sum_probs=14.1
Q ss_pred ccccCCCCCceeeeece
Q 030931 2 LRVKQPYCTSCTLVKFY 18 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~ 18 (169)
|.+..|+|||+|++++.
T Consensus 35 i~G~~G~GKT~L~~~~~ 51 (357)
T 2fna_A 35 VLGLRRTGKSSIIKIGI 51 (357)
T ss_dssp EEESTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 45689999999999773
No 463
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=62.94 E-value=0.97 Score=31.65 Aligned_cols=17 Identities=6% Similarity=-0.275 Sum_probs=14.1
Q ss_pred ccccCCCCCceeeeece
Q 030931 2 LRVKQPYCTSCTLVKFY 18 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~ 18 (169)
|.+.+|+|||+|++.+.
T Consensus 49 l~G~~GtGKT~la~~la 65 (268)
T 2r62_A 49 LVGPPGTGKTLLAKAVA 65 (268)
T ss_dssp CBCSSCSSHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHH
Confidence 45789999999999763
No 464
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=62.38 E-value=0.9 Score=30.73 Aligned_cols=16 Identities=13% Similarity=-0.068 Sum_probs=13.2
Q ss_pred ccccCCCCCceeeeec
Q 030931 2 LRVKQPYCTSCTLVKF 17 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f 17 (169)
|.+..|+|||||+..+
T Consensus 28 I~G~NgsGKStil~ai 43 (203)
T 3qks_A 28 IIGQNGSGKSSLLDAI 43 (203)
T ss_dssp EECCTTSSHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHH
Confidence 4568899999999953
No 465
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=62.33 E-value=0.78 Score=30.49 Aligned_cols=18 Identities=6% Similarity=-0.193 Sum_probs=14.3
Q ss_pred ccccCCCCCceeeeecee
Q 030931 2 LRVKQPYCTSCTLVKFYL 19 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~ 19 (169)
|.+..||||||+.+.+..
T Consensus 13 i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 13 ITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp EEECTTSCHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 345899999999987644
No 466
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=62.16 E-value=0.72 Score=33.39 Aligned_cols=18 Identities=22% Similarity=0.014 Sum_probs=14.6
Q ss_pred ccccCCCCCceeeeecee
Q 030931 2 LRVKQPYCTSCTLVKFYL 19 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~ 19 (169)
|.+..|+|||+|++++..
T Consensus 36 i~G~~G~GKT~Ll~~~~~ 53 (350)
T 2qen_A 36 LLGIRRVGKSSLLRAFLN 53 (350)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EECCCcCCHHHHHHHHHH
Confidence 456889999999998743
No 467
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=61.93 E-value=18 Score=26.95 Aligned_cols=34 Identities=18% Similarity=0.191 Sum_probs=25.8
Q ss_pred CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931 36 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL 71 (169)
Q Consensus 36 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~ 71 (169)
.+.+.|+|+|+.-. ......+..+|.+|+|...+
T Consensus 247 ~yD~VIID~pP~~~--~~~~~al~~aD~vliv~~p~ 280 (403)
T 3ez9_A 247 DYDFIFIDTGPHLD--PFLLNGLAASDLLLTPTPPA 280 (403)
T ss_dssp GCSEEEEEECSSCS--HHHHHHHHHCSEEEEEECSS
T ss_pred cCCEEEEECCCCcc--HHHHHHHHHCCEEEEEecCc
Confidence 56799999998653 33455667899999999764
No 468
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=61.89 E-value=1.5 Score=31.91 Aligned_cols=16 Identities=6% Similarity=-0.153 Sum_probs=13.6
Q ss_pred ccccCCCCCceeeeec
Q 030931 2 LRVKQPYCTSCTLVKF 17 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f 17 (169)
|.+..|+|||+|+..+
T Consensus 29 i~G~NGsGKS~ll~ai 44 (322)
T 1e69_A 29 IVGPNGSGKSNIIDAI 44 (322)
T ss_dssp EECCTTTCSTHHHHHH
T ss_pred EECCCCCcHHHHHHHH
Confidence 5678999999999964
No 469
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=61.43 E-value=0.75 Score=32.88 Aligned_cols=18 Identities=11% Similarity=-0.258 Sum_probs=14.4
Q ss_pred ccccCCCCCceeeeecee
Q 030931 2 LRVKQPYCTSCTLVKFYL 19 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~ 19 (169)
|.+-+||||||+.+++..
T Consensus 7 l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 7 TIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 456899999999987643
No 470
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=61.39 E-value=0.91 Score=35.50 Aligned_cols=16 Identities=6% Similarity=0.013 Sum_probs=13.9
Q ss_pred ccccCCCCCceeeeec
Q 030931 2 LRVKQPYCTSCTLVKF 17 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f 17 (169)
|++..|+|||||++.|
T Consensus 44 l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 44 VSGTSGTGKTLFSIQF 59 (525)
T ss_dssp EEESTTSSHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHH
Confidence 5678999999999984
No 471
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=61.32 E-value=0.77 Score=33.72 Aligned_cols=18 Identities=0% Similarity=-0.237 Sum_probs=14.6
Q ss_pred ccccCCCCCceeeeecee
Q 030931 2 LRVKQPYCTSCTLVKFYL 19 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~ 19 (169)
|.+.+|+|||+|++.+..
T Consensus 50 i~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 50 IYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp EEECTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 456899999999997743
No 472
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=60.91 E-value=0.79 Score=36.67 Aligned_cols=25 Identities=0% Similarity=-0.291 Sum_probs=18.1
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|+|||||++-+.....|+.|
T Consensus 383 iiG~NGsGKSTLlk~l~Gl~~p~~G 407 (608)
T 3j16_B 383 MMGENGTGKTTLIKLLAGALKPDEG 407 (608)
T ss_dssp EESCTTSSHHHHHHHHHTSSCCSBC
T ss_pred EECCCCCcHHHHHHHHhcCCCCCCC
Confidence 5678999999999976444444444
No 473
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=60.83 E-value=0.78 Score=33.21 Aligned_cols=17 Identities=6% Similarity=-0.279 Sum_probs=14.2
Q ss_pred ccccCCCCCceeeeece
Q 030931 2 LRVKQPYCTSCTLVKFY 18 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~ 18 (169)
|.+.+|+|||+|++.+.
T Consensus 42 l~G~~GtGKT~la~~i~ 58 (324)
T 1l8q_A 42 IYGSVGTGKTHLLQAAG 58 (324)
T ss_dssp EECSSSSSHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHH
Confidence 45789999999999764
No 474
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=60.71 E-value=9.6 Score=27.46 Aligned_cols=17 Identities=0% Similarity=-0.242 Sum_probs=14.2
Q ss_pred ccccCCCCCceeeeece
Q 030931 2 LRVKQPYCTSCTLVKFY 18 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~ 18 (169)
|.+.+|+|||+|++.+.
T Consensus 60 l~G~~GtGKT~la~~ia 76 (338)
T 3pfi_A 60 FSGPAGLGKTTLANIIS 76 (338)
T ss_dssp EECSTTSSHHHHHHHHH
T ss_pred EECcCCCCHHHHHHHHH
Confidence 45789999999999773
No 475
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=60.62 E-value=0.64 Score=39.32 Aligned_cols=25 Identities=8% Similarity=-0.222 Sum_probs=20.6
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|++..|+|||||++-+.....|+.|
T Consensus 704 IiGpNGSGKSTLLklLaGll~P~sG 728 (986)
T 2iw3_A 704 VIGPNGAGKSTLINVLTGELLPTSG 728 (986)
T ss_dssp ECSCCCHHHHHHHHHHTTSSCCSEE
T ss_pred EECCCCCCHHHHHHHHhCCCCCCce
Confidence 5678999999999988777777766
No 476
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=60.08 E-value=1 Score=39.37 Aligned_cols=25 Identities=12% Similarity=-0.000 Sum_probs=19.9
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|.+..|||||||++-+...+.|+.|
T Consensus 449 ivG~sGsGKSTll~ll~~~~~~~~G 473 (1321)
T 4f4c_A 449 LVGSSGCGKSTIISLLLRYYDVLKG 473 (1321)
T ss_dssp EEECSSSCHHHHHHHHTTSSCCSEE
T ss_pred EEecCCCcHHHHHHHhccccccccC
Confidence 4578999999999977666666666
No 477
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=59.64 E-value=0.82 Score=31.63 Aligned_cols=18 Identities=6% Similarity=-0.152 Sum_probs=14.1
Q ss_pred ccccCCCCCceeeeecee
Q 030931 2 LRVKQPYCTSCTLVKFYL 19 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~ 19 (169)
+-+..||||||+.+.+..
T Consensus 7 ~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 7 IEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEECTTSSHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHH
Confidence 345899999999987643
No 478
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=59.41 E-value=0.58 Score=32.48 Aligned_cols=23 Identities=17% Similarity=0.046 Sum_probs=16.1
Q ss_pred ccccCCCCCceeeeeceeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLL 24 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t 24 (169)
|++..|+|||||+..+.....|+
T Consensus 32 i~GpnGsGKSTll~~i~g~~~~~ 54 (227)
T 1qhl_A 32 LSGGNGAGKSTTMAAFVTALIPD 54 (227)
T ss_dssp HHSCCSHHHHHHHHHHHHHHSCC
T ss_pred EECCCCCCHHHHHHHHhcccccC
Confidence 45788999999999653333333
No 479
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=58.86 E-value=1.2 Score=38.86 Aligned_cols=25 Identities=20% Similarity=-0.015 Sum_probs=19.1
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|.+..|||||||++-+...+.|+.|
T Consensus 421 ivG~sGsGKSTl~~ll~g~~~~~~G 445 (1284)
T 3g5u_A 421 LVGNSGCGKSTTVQLMQRLYDPLDG 445 (1284)
T ss_dssp EECCSSSSHHHHHHHTTTSSCCSEE
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCe
Confidence 4678999999999976555556555
No 480
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=58.76 E-value=0.91 Score=33.46 Aligned_cols=18 Identities=22% Similarity=0.152 Sum_probs=14.6
Q ss_pred ccccCCCCCceeeeecee
Q 030931 2 LRVKQPYCTSCTLVKFYL 19 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~ 19 (169)
|.+.+|+|||+|++.+..
T Consensus 49 i~G~~G~GKTtl~~~l~~ 66 (389)
T 1fnn_A 49 LLGRPGTGKTVTLRKLWE 66 (389)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 456899999999997643
No 481
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=58.33 E-value=0.9 Score=32.09 Aligned_cols=18 Identities=6% Similarity=-0.280 Sum_probs=14.6
Q ss_pred ccccCCCCCceeeeecee
Q 030931 2 LRVKQPYCTSCTLVKFYL 19 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~ 19 (169)
|.+.+|+|||+|++.+..
T Consensus 56 l~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 56 LYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp EESSSSSSHHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHHH
Confidence 456899999999997743
No 482
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=58.22 E-value=1.2 Score=30.95 Aligned_cols=18 Identities=0% Similarity=-0.346 Sum_probs=14.6
Q ss_pred ccccCCCCCceeeeecee
Q 030931 2 LRVKQPYCTSCTLVKFYL 19 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~ 19 (169)
|.+.+|+|||+|++.+..
T Consensus 50 l~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 50 MVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp EECCTTSCHHHHHHHHHH
T ss_pred EECcCCCCHHHHHHHHHH
Confidence 456899999999997743
No 483
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=58.05 E-value=1.3 Score=33.25 Aligned_cols=17 Identities=0% Similarity=-0.103 Sum_probs=14.3
Q ss_pred ccccCCCCCceeeeece
Q 030931 2 LRVKQPYCTSCTLVKFY 18 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~ 18 (169)
|.+.+|+|||||++.+.
T Consensus 174 l~G~~GsGKSTl~~~l~ 190 (377)
T 1svm_A 174 FKGPIDSGKTTLAAALL 190 (377)
T ss_dssp EECSTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 46789999999998764
No 484
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=57.92 E-value=1.2 Score=32.10 Aligned_cols=66 Identities=12% Similarity=0.067 Sum_probs=36.3
Q ss_pred CCEEEEEEEcCCCCCchh--hH--Hhhcc--CCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030931 35 KNVIFTVWDVGGQEKLRP--LW--RHYFN--NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK 107 (169)
Q Consensus 35 ~~~~~~i~D~~G~~~~~~--~~--~~~~~--~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~ 107 (169)
.+..+.|.||+|...... +. ...+. ..+..++|+|.+.. ...+.++.+.+ ..-+ ..-++.||.|..
T Consensus 181 ~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~----~~l~-~~giVltk~D~~ 252 (296)
T 2px0_A 181 SEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRF----SSVP-VNQYIFTKIDET 252 (296)
T ss_dssp GGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTT----SSSC-CCEEEEECTTTC
T ss_pred cCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHH----hcCC-CCEEEEeCCCcc
Confidence 356789999999765432 11 12232 35778899987542 23333332222 1112 234566999975
No 485
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=57.87 E-value=1 Score=28.50 Aligned_cols=17 Identities=6% Similarity=-0.308 Sum_probs=14.1
Q ss_pred ccccCCCCCceeeeece
Q 030931 2 LRVKQPYCTSCTLVKFY 18 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~ 18 (169)
|.+.+|+|||++.+.+.
T Consensus 29 l~G~~GtGKt~lA~~i~ 45 (145)
T 3n70_A 29 LYGAPGTGRMTGARYLH 45 (145)
T ss_dssp EESSTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 56789999999998663
No 486
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=57.78 E-value=1 Score=33.10 Aligned_cols=17 Identities=6% Similarity=-0.228 Sum_probs=14.2
Q ss_pred ccccCCCCCceeeeece
Q 030931 2 LRVKQPYCTSCTLVKFY 18 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~ 18 (169)
|.+.+|+|||+|++.+.
T Consensus 49 l~G~~G~GKT~l~~~~~ 65 (387)
T 2v1u_A 49 LYGLTGTGKTAVARLVL 65 (387)
T ss_dssp ECBCTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 45689999999999763
No 487
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=57.58 E-value=1.2 Score=32.51 Aligned_cols=18 Identities=6% Similarity=-0.147 Sum_probs=14.4
Q ss_pred ccccCCCCCceeeeecee
Q 030931 2 LRVKQPYCTSCTLVKFYL 19 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~ 19 (169)
|.+.+|+||||+++.+..
T Consensus 41 l~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 41 LYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EECSTTSSHHHHHHTHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 457899999999997633
No 488
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=57.54 E-value=1.1 Score=30.42 Aligned_cols=24 Identities=13% Similarity=-0.026 Sum_probs=16.4
Q ss_pred EEEeeeccCCCHHHHHHHHHHHHHhh
Q 030931 131 IQGTCALKGDGLYEGLDWLASTLKEM 156 (169)
Q Consensus 131 ~~~~Sa~~~~gi~~~~~~l~~~~~~~ 156 (169)
+..+.|. ..++++.+.+...+.+.
T Consensus 178 ~~~IDa~--~~~e~V~~~i~~~i~~~ 201 (205)
T 4hlc_A 178 FKSVNAD--QPLENVVEDTYQTIIKY 201 (205)
T ss_dssp EEEEETT--SCHHHHHHHHHHHHHHH
T ss_pred EEEEECC--CCHHHHHHHHHHHHHHH
Confidence 5555553 46888888888777654
No 489
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=56.82 E-value=1.1 Score=31.44 Aligned_cols=22 Identities=5% Similarity=-0.283 Sum_probs=16.1
Q ss_pred eccCCCHHHHHHHHHHHHHhhh
Q 030931 136 ALKGDGLYEGLDWLASTLKEMR 157 (169)
Q Consensus 136 a~~~~gi~~~~~~l~~~~~~~~ 157 (169)
-.++..++++.+.+...+....
T Consensus 217 DTs~~s~eev~~~I~~~i~~~~ 238 (250)
T 3nwj_A 217 SVSDLTPAEIAIEAFEQVQSYL 238 (250)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHh
Confidence 3455678999998888776653
No 490
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=56.80 E-value=1.2 Score=31.13 Aligned_cols=18 Identities=11% Similarity=-0.069 Sum_probs=14.1
Q ss_pred ccccCCCCCceeeeecee
Q 030931 2 LRVKQPYCTSCTLVKFYL 19 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~ 19 (169)
|.+.+||||||+.+.+..
T Consensus 27 I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 27 VSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 446899999999986643
No 491
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=56.51 E-value=1.2 Score=33.66 Aligned_cols=16 Identities=13% Similarity=-0.236 Sum_probs=13.7
Q ss_pred ccccCCCCCceeeeec
Q 030931 2 LRVKQPYCTSCTLVKF 17 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f 17 (169)
|.+.+|+|||+|+..+
T Consensus 183 I~G~sGsGKTTLl~~l 198 (400)
T 3lda_A 183 LFGEFRTGKSQLCHTL 198 (400)
T ss_dssp EEESTTSSHHHHHHHH
T ss_pred EEcCCCCChHHHHHHH
Confidence 4568999999999976
No 492
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=56.49 E-value=1 Score=32.09 Aligned_cols=18 Identities=6% Similarity=-0.302 Sum_probs=14.7
Q ss_pred ccccCCCCCceeeeecee
Q 030931 2 LRVKQPYCTSCTLVKFYL 19 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~ 19 (169)
|.+.+|+|||+|++.+..
T Consensus 59 l~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 59 LFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp EESSSSSCHHHHHHHHHH
T ss_pred EECcCCCCHHHHHHHHHH
Confidence 456899999999997744
No 493
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=56.25 E-value=1.4 Score=38.50 Aligned_cols=25 Identities=12% Similarity=-0.072 Sum_probs=17.8
Q ss_pred ccccCCCCCceeeeeceeeeeeeee
Q 030931 2 LRVKQPYCTSCTLVKFYLLFLLLVR 26 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~~~~~t~~ 26 (169)
|.+..|||||||++-+..-+.|+.|
T Consensus 1110 IVG~SGsGKSTL~~lL~rl~~p~~G 1134 (1321)
T 4f4c_A 1110 LVGPSGCGKSTVVALLERFYDTLGG 1134 (1321)
T ss_dssp EECSTTSSTTSHHHHHTTSSCCSSS
T ss_pred EECCCCChHHHHHHHHhcCccCCCC
Confidence 4568899999999965444555544
No 494
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=55.82 E-value=1 Score=31.21 Aligned_cols=18 Identities=6% Similarity=-0.261 Sum_probs=14.5
Q ss_pred ccccCCCCCceeeeecee
Q 030931 2 LRVKQPYCTSCTLVKFYL 19 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~~ 19 (169)
|.+.+|+|||+|.+.+..
T Consensus 44 l~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 44 LLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp EESCTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 456899999999997743
No 495
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=55.78 E-value=1.4 Score=32.73 Aligned_cols=15 Identities=7% Similarity=-0.108 Sum_probs=13.0
Q ss_pred ccccCCCCCceeeee
Q 030931 2 LRVKQPYCTSCTLVK 16 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~ 16 (169)
|.+..|+|||+|+..
T Consensus 30 i~G~NGaGKT~ileA 44 (371)
T 3auy_A 30 IIGENGSGKSSIFEA 44 (371)
T ss_dssp EEECTTSSHHHHHHH
T ss_pred EECCCCCCHHHHHHH
Confidence 567899999999984
No 496
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=55.22 E-value=1.7 Score=31.84 Aligned_cols=15 Identities=13% Similarity=-0.095 Sum_probs=13.0
Q ss_pred ccccCCCCCceeeee
Q 030931 2 LRVKQPYCTSCTLVK 16 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~ 16 (169)
|.+..|+|||+|+..
T Consensus 28 i~G~NGsGKS~lleA 42 (339)
T 3qkt_A 28 IIGQNGSGKSSLLDA 42 (339)
T ss_dssp EECCTTSSHHHHHHH
T ss_pred EECCCCCCHHHHHHH
Confidence 567899999999985
No 497
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=54.56 E-value=1.3 Score=29.51 Aligned_cols=17 Identities=6% Similarity=-0.095 Sum_probs=13.6
Q ss_pred ccccCCCCCceeeeece
Q 030931 2 LRVKQPYCTSCTLVKFY 18 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~ 18 (169)
|.+..||||||+.+.+.
T Consensus 7 i~G~~GsGKst~~~~la 23 (208)
T 3ake_A 7 IDGPSASGKSSVARRVA 23 (208)
T ss_dssp EECSTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 44689999999998663
No 498
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=54.32 E-value=1.2 Score=31.90 Aligned_cols=16 Identities=6% Similarity=0.005 Sum_probs=13.3
Q ss_pred ccccCCCCCceeeeec
Q 030931 2 LRVKQPYCTSCTLVKF 17 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f 17 (169)
|.+.+|+|||+|.+.+
T Consensus 72 l~G~~GtGKT~la~~l 87 (309)
T 3syl_A 72 FTGNPGTGKTTVALKM 87 (309)
T ss_dssp EEECTTSSHHHHHHHH
T ss_pred EECCCCCCHHHHHHHH
Confidence 4568999999999754
No 499
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=54.30 E-value=1.3 Score=31.53 Aligned_cols=17 Identities=12% Similarity=-0.087 Sum_probs=13.9
Q ss_pred ccccCCCCCceeeeece
Q 030931 2 LRVKQPYCTSCTLVKFY 18 (169)
Q Consensus 2 ~~~~~~~~Ktsll~~f~ 18 (169)
|-+..||||||+.+.+.
T Consensus 80 I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 80 LTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEECTTSCHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 34589999999998775
No 500
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=54.12 E-value=1.5 Score=29.16 Aligned_cols=39 Identities=5% Similarity=-0.049 Sum_probs=22.2
Q ss_pred CEEEEEEECCChhhH-HHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 030931 62 DGLIYVVDSLDRERI-GKAKQEFQAIIKDPFMLNSVILVFANKQDM 106 (169)
Q Consensus 62 ~~ii~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~piivv~nK~Dl 106 (169)
+.-++++|= .+.+ .....++..+.+ .+.++++.|...|-
T Consensus 76 ~~dvviIDE--~Q~~~~~~~~~l~~l~~----~~~~Vi~~Gl~~~f 115 (184)
T 2orw_A 76 DTRGVFIDE--VQFFNPSLFEVVKDLLD----RGIDVFCAGLDLTH 115 (184)
T ss_dssp TEEEEEECC--GGGSCTTHHHHHHHHHH----TTCEEEEEEESBCT
T ss_pred CCCEEEEEC--cccCCHHHHHHHHHHHH----CCCCEEEEeecccc
Confidence 345666664 2223 223334444433 27899999998884
Done!